Coupled stochastic soil moisture simulation-optimization model of deficit irrigation

NASA Astrophysics Data System (ADS)

Alizadeh, Hosein; Mousavi, S. Jamshid

2013-07-01

This study presents an explicit stochastic optimization-simulation model of short-term deficit irrigation management for large-scale irrigation districts. The model which is a nonlinear nonconvex program with an economic objective function is built on an agrohydrological simulation component. The simulation component integrates (1) an explicit stochastic model of soil moisture dynamics of the crop-root zone considering interaction of stochastic rainfall and irrigation with shallow water table effects, (2) a conceptual root zone salt balance model, and 3) the FAO crop yield model. Particle Swarm Optimization algorithm, linked to the simulation component, solves the resulting nonconvex program with a significantly better computational performance compared to a Monte Carlo-based implicit stochastic optimization model. The model has been tested first by applying it in single-crop irrigation problems through which the effects of the severity of water deficit on the objective function (net benefit), root-zone water balance, and irrigation water needs have been assessed. Then, the model has been applied in Dasht-e-Abbas and Ein-khosh Fakkeh Irrigation Districts (DAID and EFID) of the Karkheh Basin in southwest of Iran. While the maximum net benefit has been obtained for a stress-avoidance (SA) irrigation policy, the highest water profitability has been resulted when only about 60% of the water used in the SA policy is applied. The DAID with respectively 33% of total cultivated area and 37% of total applied water has produced only 14% of the total net benefit due to low-valued crops and adverse soil and shallow water table conditions.

Global simulation of interactions between groundwater and terrestrial ecosystems

NASA Astrophysics Data System (ADS)

Braakhekke, M. C.; Rebel, K.; Dekker, S. C.; Smith, B.; Van Beek, L. P.; Sutanudjaja, E.; van Kampenhout, L.; Wassen, M. J.

2016-12-01

In many places in the world ecosystems are influenced by the presence of a shallow groundwater table. In these regions upward water flux due to capillary rise increases soil moisture availability in the root zone, which has strong positive effect on evapotranspiration. Additionally it has important consequences for vegetation dynamics and fluxes of carbon and nitrogen. Under water limited conditions shallow groundwater stimulates vegetation productivity, and soil organic matter decomposition while under saturated conditions groundwater may have a negative effect on these processes due to lack of oxygen. Furthermore, since plant species differ with respect to their root distribution, preference for moisture conditions, and resistance to oxygen stress, shallow groundwater also influences vegetation type. Finally, processes such as denitrification and methane production occur under strictly anaerobic conditions and are thus strongly influenced by moisture availability. Most global hydrological models and several land surface models simulate groundwater table dynamics and their effects on land surface processes. However, these models typically have relatively simplistic representation of vegetation and do not consider changes in vegetation type and structure and are therefore less suitable to represent effects of groundwater on biogeochemical fluxes. Dynamic global vegetation models (DGVMs), describe land surface from an ecological perspective, combining detailed description of vegetation dynamics and structure and biogeochemical processes. These models are thus more appropriate to simulate the ecological and biogeochemical effects of groundwater interactions. However, currently virtually all DGVMs ignore these effects, assuming that water tables are too deep to affect soil moisture in the root zone. We have implemented a tight coupling between the dynamic global ecosystem model LPJ-GUESS and the global hydrological model PCR-GLOBWB. Using this coupled model we aim to study the influence of shallow groundwater on terrestrial ecosystem processes. We will present results of global simulations to demonstrate the effects on C, N, and water fluxes.

Groundwater control of mangrove surface elevation: shrink and swell varies with soil depth

USGS Publications Warehouse

Whelan, K.R.T.; Smith, T. J.; Cahoon, D.R.; Lynch, J.C.; Anderson, G.H.

2005-01-01

We measured monthly soil surface elevation change and determined its relationship to groundwater changes at a mangrove forest site along Shark River, Everglades National Park, Florida. We combined the use of an original design, surface elevation table with new rod-surface elevation tables to separately track changes in the mid zone (0?4 m), the shallow root zone (0?0.35 m), and the full sediment profile (0?6 m) in response to site hydrology (daily river stage and groundwater piezometric pressure). We calculated expansion and contraction for each of the four constituent soil zones (surface [accretion and erosion; above 0 m], shallow zone [0?0.35 m], middle zone [0.35?4 m], and bottom zone [4?6 m]) that comprise the entire soil column. Changes in groundwater pressure correlated strongly with changes in soil elevation for the entire profile (Adjusted R2 5 0.90); this relationship was not proportional to the depth of the soil profile sampled. The change in thickness of the bottom soil zone accounted for the majority (R2 5 0.63) of the entire soil profile expansion and contraction. The influence of hydrology on specific soil zones and absolute elevation change must be considered when evaluating the effect of disturbances, sea level rise, and water management decisions on coastal wetland systems.

Phene Synergism between Root Hair Length and Basal Root Growth Angle for Phosphorus Acquisition1[OPEN

PubMed Central

Miguel, Magalhaes Amade

2015-01-01

Shallow basal root growth angle (BRGA) increases phosphorus acquisition efficiency by enhancing topsoil foraging because in most soils, phosphorus is concentrated in the topsoil. Root hair length and density (RHL/D) increase phosphorus acquisition by expanding the soil volume subject to phosphorus depletion through diffusion. We hypothesized that shallow BRGA and large RHL/D are synergetic for phosphorus acquisition, meaning that their combined effect is greater than the sum of their individual effects. To evaluate this hypothesis, phosphorus acquisition in the field in Mozambique was compared among recombinant inbred lines of common bean (Phaseolus vulgaris) having four distinct root phenotypes: long root hairs and shallow basal roots, long root hairs and deep basal roots, short root hairs and shallow basal roots, and short root hairs and deep basal roots. The results revealed substantial synergism between BRGA and RHL/D. Compared with short-haired, deep-rooted phenotypes, long root hairs increased shoot biomass under phosphorus stress by 89%, while shallow roots increased shoot biomass by 58%. Genotypes with both long root hairs and shallow roots had 298% greater biomass accumulation than short-haired, deep-rooted phenotypes. Therefore, the utility of shallow basal roots and long root hairs for phosphorus acquisition in combination is twice as large as their additive effects. We conclude that the anatomical phene of long, dense root hairs and the architectural phene of shallower basal root growth are synergetic for phosphorus acquisition. Phene synergism may be common in plant biology and can have substantial importance for plant fitness, as shown here. PMID:25699587

Tritium Plume Dynamics in the Shallow Unsaturated Zone Adjacent to an Arid Waste Disposal Facility

NASA Astrophysics Data System (ADS)

Maples, S.; Andraski, B. J.; Stonestrom, D. A.; Cooper, C. A.; Michel, R. L.; Pohll, G. M.

2012-12-01

Previous studies at the U.S. Geological Survey's Amargosa Desert Research Site (ADRS) in southern Nevada have documented two plumes of tritiated water-vapor (3HHOg) adjacent to a closed, commercial low-level radioactive waste disposal facility. Wastes were disposed on-site from 1962-92. Tritium has moved long distances (> 400 m) through a shallow (1-2-m depth) dry gravelly layer—orders of magnitude further than anticipated by standard transport models. Geostatistical methods, spatial moment analyses and tritium flux calculations were applied to assess shallow plume dynamics. A grid-based plant-water sampling method was utilized to infer detailed, field-scale 3HHOg concentrations at 5-yr intervals during 2001-11. Results indicate that gravel-layer 3HHOg mass diminished faster than would be expected from radioactive decay (~70% in 10 yr). Both plumes exhibited center-of-mass stability, suggesting that bulk-plume movement is minimal during the period of study. Nonetheless, evidence of localized lateral advancement along some margins, combined with increases in the spatial covariance of concentration distribution, indicates intra-plume mass redistribution is ongoing. Previous studies have recognized that vertical movement of tritiated water from sub-root-zone gravel into the root-zone contributes to atmospheric release via evapotranspiration. Estimates of lateral and vertical tritium fluxes during the study period indicate (1) vertical tritiated water fluxes were dominated by diffusive-vapor fluxes (> 90%), and (2) vertical diffusive-vapor fluxes were roughly an order of magnitude greater than lateral diffusive-vapor fluxes. This behavior highlights the importance of the atmosphere as a tritium sink. Estimates of cumulative vertical diffusive-vapor flux and radioactive decay with time were comparable to observed declines in total shallow plume mass with time. This suggests observed changes in plume mass may (1) be attributed, in considerable part, to these removal mechanisms, and (2) appreciable input from the adjacent disposal facility is not occurring at this time.

Interacting vegetative and thermal contributions to water movement in desert soil

USGS Publications Warehouse

Garcia, C.A.; Andraski, Brian J.; Stonestrom, David A.; Cooper, C.A.; Šimůnek, J.; Wheatcraft, S.W.

2011-01-01

Thermally driven water-vapor flow can be an important component of total water movement in bare soil and in deep unsaturated zones, but this process is often neglected when considering the effects of soil–plant–atmosphere interactions on shallow water movement. The objectives of this study were to evaluate the coupled and separate effects of vegetative and thermal-gradient contributions to soil water movement in desert environments. The evaluation was done by comparing a series of simulations with and without vegetation and thermal forcing during a 4.7-yr period (May 2001–December 2005). For vegetated soil, evapotranspiration alone reduced root-zone (upper 1 m) moisture to a minimum value (25 mm) each year under both isothermal and nonisothermal conditions. Variations in the leaf area index altered the minimum storage values by up to 10 mm. For unvegetated isothermal and nonisothermal simulations, root-zone water storage nearly doubled during the simulation period and created a persistent driving force for downward liquid fluxes below the root zone (total net flux ~1 mm). Total soil water movement during the study period was dominated by thermally driven vapor fluxes. Thermally driven vapor flow and condensation supplemented moisture supplies to plant roots during the driest times of each year. The results show how nonisothermal flow is coupled with plant water uptake, potentially influencing ecohydrologic relations in desert environments.

An Experimental and Modeling Synthesis to Determine Seasonality of Hydraulic Redistribution in Semi-arid Region with Multispecies Vegetation Interaction

NASA Astrophysics Data System (ADS)

Lee, E.; Kumar, P.; Barron-Gafford, G.; Scott, R. L.

2016-12-01

A key challenge in critical zone science is to understand and predict the interaction between aboveground and belowground eco-hydrologic processes. Roots play an important role in linking aboveground plant ecophysiological processes, such as carbon, water and energy exchange with the atmosphere, and the belowground processes associated with soil moisture and carbon, and microbial and nutrient dynamics. This study analyzes aboveground and belowground interaction through hydraulic redistribution (HR), a phenomenon that roots serve as preferential pathways for water movement from wet to dry soil layers. HR process is simulated by multi-layer canopy model and compared with relative measurements from the field to study effect of HR on different plant species where Posopis velutina Woot. (velvet mesquite) and understory co-exist and share resources. The study site is one of Ameriflux sites: Santa Rita Mesquite savanna, Arizona, with a distinct dry season that facilitates occurrence of HR. We analyzed how two vegetation species share and utilize the limited amount of water by HR in both dry and wet seasons. During dry season, water moves from deep layer to shallow layer through roots and hydraulic lift (HL) occurs. During wet season, water moves from shallow layer to deep layer through roots and hydraulic descent (HD) occurs. About 40% of precipitation is transferred to deep soil layer with HD and 15% of that is transported back to shallow soil layer with HL in dry season. Assuming water supplied through HL supports evapotranspiration of plants, HL supports 10% of evapotranspiration. The ratio of mesquite and understory root conductivities is an important factor that determines how two plant species interact and share resources in water-limited environment. The sensitivity analysis of root conductivities suggests that high understory root conductivity facilitates water transported by HR and increases mesquite transpiration and photosynthesis. Understory transpiration and photosynthesis show increase with HR only in dry season when water is supplied to shallow layer through HL. With low understory root conductivity, understory looses the competition for water against mesquite and show decrease in transpiration and photosynthetic fluxes when HR is allowed.

Vegetation induced diel signal and its meaning in recharge and discharge regions

NASA Astrophysics Data System (ADS)

Gribovszki, Zoltán; Tóth, Tibor; Csáfordi, Péter; Szabó, András; Móricz, Norbert; Kalicz, Péter

2017-04-01

Afforestation, promoted by the European Union is planned in Hungary in the next decades. One of the most important region for afforestation is the Hungarian Great Plain where the precipitation is far below potential ET so forests can not survive without significant water uptake from shallow groundwater. Diel fluctuations of hydrological variables (e.g., soil moisture, shallow groundwater level, streamflow rate) are rarely investigated in the hydrologic literature although these short-term fluctuations may incorporate useful information (like groundwater uptake) about hydro-ecological systems in shallow groundwater areas. Vegetation induced diel fluctuations are rarely compared under varying hydrologic conditions (such as recharge and discharge zones). In this study, the data of soil moisture and shallow groundwater monitoring under different surface covers (forest and neighboring agricultural plots) in discharge and recharge regions were analyzed to gain a better understanding of the vegetation hydrological impact or water uptake in changing climate. The pilot areas of the study are located in Hungarian Great Plain and in Western Hungary. The water table under the forest displayed a typical night-time recovery in the discharge region, indicating a significant groundwater supply. Certainly, the root system of the forest was able to tap the groundwater in depths measuring a few metres, while the shallower roots of the herbaceous vegetation generally did not reach the groundwater reservoir at these depths. In the recharge zone the water table under the forest showed step-like diel pattern that refer to a lack of additional groundwater supply from below. The low groundwater evapotranspiration of the forest in the recharge zone was due to the lack of the groundwater supply in the recharge area. Similar patterns can be detected in the soil moisture of recharge and discharge zones as well. Our results suggest that local estimations of groundwater evapotranspiration from water table or soil moisture measurements can only be achieved by understanding the different hydrological characteristics of recharge and discharge zones. In the context of climate change higher temperature and longer dry periods induced higher evapotranspiration constrain will probably reduce the groundwater level and so the spatial extent of shallow groundwater areas (reachable groundwater resources for vegetation). Therefore the better understanding of hydrological impact of different surface covers in shallow groundwater areas in changing climate is crucial, not only from water resources management point of view, but also from the viewpoint of agricultural and forest production or survival of forests with high water demand. This research has been mainly supported by the Agroclimate.2 VKSZ_12-1-2013-0034 project. The research of Zoltán Gribovszki was supported by the European Union and the State of Hungary, co-financed by the European Social Fund in the framework of TÁMOP 4.2.4. A/2-11-1-2012-0001 'National Excellence Program'.

Time-lapse 3D electrical resistivity tomography to monitor soil-plant interactions

NASA Astrophysics Data System (ADS)

Boaga, Jacopo; Rossi, Matteo; Cassiani, Giorgio; Putti, Mario

2013-04-01

In this work we present the application of time-lapse non-invasive 3D micro- electrical tomography (ERT) to monitor soil-plant interactions in the root zone in the framework of the FP7 Project CLIMB (Climate Induced Changes on the Hydrology of Mediterranean Basins). The goal of the study is to gain a better understanding of the soil-vegetation interactions by the use of non-invasive techniques. We designed, built and installed a 3D electrical tomography apparatus for the monitoring of the root zone of a single apple tree in an orchard located in the Trentino region, Northern Italy. The micro-ERT apparatus consists of 48 buried electrodes on 4 instrumented micro boreholes plus 24 mini-electrodes on the surface spaced 0.1 m on a square grid. We collected repeated ERT and TDR soil moisture measurements for one year and performed two different controlled irrigation tests: one during a very dry Summer and one during a very wet and highly dynamic plant growing Spring period. We also ran laboratory analyses on soil specimens, in order to evaluate the electrical response at different saturation steps. The results demonstrate that 3D micro-ERT is capable of characterizing subsoil conditions and monitoring root zone activities, especially in terms of root zone suction regions. In particular, we note that in very dry conditions, 3D micro ERT can image water plumes in the shallow subsoil produced by a drip irrigation system. In the very dynamic growing season, under abundant irrigation, micro 3D ERT can detect the main suction zones caused by the tree root activity. Even though the quantitative use of this technique for moisture content balance suffers from well-known inversion difficulties, even the pure imaging of the active root zone is a valuable contribution. However the integration of the measurements in a fully coupled hydrogeophysical inversion is the way forward for a better understanding of subsoil interactions between biomass, hydrosphere and atmosphere.

Do shallow soil, low water availability, or their combination increase the competition between grasses with different root systems in karst soil?

PubMed

Zhao, Yajie; Li, Zhou; Zhang, Jing; Song, Haiyan; Liang, Qianhui; Tao, Jianping; Cornelissen, Johannes H C; Liu, Jinchun

2017-04-01

Uneven soil depth and low water availability are the key limiting factors to vegetation restoration and reconstruction in limestone soils such as in vulnerable karst regions. Belowground competition will possibly increase under limited soil resources. Here, we investigate whether low resource availability (including shallow soil, low water availability, and shallow soil and low water availability combined) stimulates the competition between grasses with different root systems in karst soil, by assessing their growth response, biomass allocation, and morphological plasticity. In a full three-way factorial blocked design of soil depth by water availability by neighbor identity, we grew Festuca arundinacea (deep-rooted) and Lolium perenne (shallow-rooted) under normal versus shallow soil depth, high versus low water availability, and in monoculture (conspecific neighbor) versus mixture (neighbor of the other species). The key results were as follows: (1) total biomass and aboveground biomass in either of the species decreased with reduction of resources but were not affected by planting patterns (monoculture or mixture) even at low resource levels. (2) For F. arundinacea, root biomass, root mass fraction, total root length, and root volume were higher in mixture than in monoculture at high resource level (consistent with resource use complementarity), but lower in mixture than in monoculture at low resource levels (consistent with interspecific competition). In contrast for L. perenne, either at high or low resource level, these root traits had mostly similar values at both planting patterns. These results suggest that deep-rooted and shallow-rooted plant species can coexist in karst regions under current climatic regimes. Declining resources, due to shallow soil, a decrease in precipitation, or combined shallow soil and karst drought, increased the root competition between plants of deep-rooted and shallow-rooted species. The root systems of deep-rooted plants may be too small to get sufficient water and nutrients from dry, shallow soil, while shallow-rooted plants will maintain a dominant position with their already adaptive strategy in respect of root biomass allocation and root growth.

Characterizing hydrology and the importance of ground-water discharge in natural and constructed wetlands

USGS Publications Warehouse

Hunt, Randall J.; Walker, John F.; Krabbenhoft, David P.

1999-01-01

Although considered the most important component for the establishment and persistence of wetlands, hydrology has been hard to characterize and linkages between hydrology and other environmental conditions are often poorly understood. In this work, methods for characterizing a wetland’s hydrology from hydrographs were developed, and the importance of ground water to the physical and geochemical conditions in the root zone was investigated. Detailed sampling of nearly continuous hydrographs showed that sites with greater ground-water discharge had higher water tables and more stable hydrographs. Subsampling of the continuous hydrograph failed to characterize the sites correctly, even though the wetland complex is located in a strong regional ground-water-discharge area. By comparing soil-moisture-potential measurements to the water-table hydrograph at one site, we noted that the amount of root-zone saturation was not necessarily driven by the water-table hydrograph but can be a result of other soil parameters (i.e., soil texture and associated capillary fringe). Ground-water discharge was not a significant determinant of maximum or average temperatures in the root zone. High ground-water discharge was associated with earliest date of thaw and shortest period of time that the root zone was frozen, however. Finally, the direction and magnitude of shallow ground-water flow was found to affect the migration and importance of a geochemical species. Areas of higher ground-water discharge had less downward penetration of CO2 generated in the root zone. In contrast, biotically derived CO2 was able to penetrate the deeper ground-water system in areas of ground-water recharge. Although ground-water flows are difficult to characterize, understanding these components is critical to the success of wetland restoration and creation efforts.

Untangling the effects of shallow groundwater and deficit irrigation on irrigation water productivity in arid region: New conceptual model.

PubMed

Xue, Jingyuan; Huo, Zailin; Wang, Fengxin; Kang, Shaozhong; Huang, Guanhua

2018-04-01

Water scarcity and salt stress are two main limitations for agricultural production. Groundwater evapotranspiration (ET g ) with upward salt movement plays an important role in crop water use and water productivity in arid regions, and it can compensate the impact of deficit irrigation on crop production. Thus, comprehensive impacts of shallow groundwater and deficit irrigation on crop water use results in an improvement of irrigation water productivity (IWP). However, it is difficult to quantify the effects of groundwater and deficit irrigation on IWP. In this study, we built an IWP evaluation model coupled with a water and salt balance model and a crop yield estimation model. As a valuable tool of IWP simulation, the calibrated model was used to investigate the coupling response of sunflower IWP to irrigation water depths (IWDs), groundwater table depth (GTDs) and groundwater salinities (GSs). A total of 210 scenarios were run in which five irrigation water depths (IWDs) and seven groundwater table depths (GTDs) and six groundwater salinities (GSs) were used. Results indicate that increasing GS clearly increases the negative effect on a crop's actual evapotranspiration (ET a ) as salt accumulation in root zone. When GS is low (0.5-1g/L), increasing GTD produces more positive effect than negative effect. In regard to relatively high GS (2-5g/L), the negative effect of shallow-saline groundwater reaches a maximum at 2m GTD. Additionally, the salt concentration in the root zone maximizes its value at 2.0m GTD. In most cases, increasing GTD and GS reduces the benefits of irrigation water and IWP. The IWP increases with decreasing irrigation water. Overall, in arid regions, capillary rise of shallow groundwater can compensate for the lack of irrigation water and improve IWP. By improving irrigation schedules and taking advantages of shallow saline groundwater, we can obtain higher IWP. Copyright © 2017 Elsevier B.V. All rights reserved.

Relating groundwater to seasonal wetlands in southeastern Wisconsin, USA

USGS Publications Warehouse

Skalbeck, J.D.; Reed, D.M.; Hunt, R.J.; Lambert, J.D.

2009-01-01

Historically, drier types of wetlands have been difficult to characterize and are not well researched. Nonetheless, they are considered to reflect the precipitation history with little, if any, regard for possible relation to groundwater. Two seasonal coastal wetland types (wet prairie, sedge meadow) were investigated during three growing seasons at three sites in the Lake Michigan Basin, Wisconsin, USA. The six seasonal wetlands were characterized using standard soil and vegetation techniques and groundwater measurements from the shallow and deep systems. They all met wetland hydrology criteria (e.g., water within 30 cm of land surface for 5% of the growing season) during the early portion of the growing season despite the lack of appreciable regional groundwater discharge into the wetland root zones. Although root-zone duration analyses did not fit a lognormal distribution previously noted in groundwater-dominated wetlands, they were able to discriminate between the plant communities and showed that wet prairie communities had shorter durations of continuous soil saturation than sedge meadow communities. These results demonstrate that the relative rates of groundwater outflows can be important for wetland hydrology and resulting wetland type. Thus, regional stresses to the shallow groundwater system such as pumping or low Great Lake levels can be expected to affect even drier wetland types. ?? Springer-Verlag 2008.

Layered Plant-Growth Media for Optimizing Gaseous, Liquid and Nutrient Requirements: Modeling, Design and Monitoring

NASA Astrophysics Data System (ADS)

Heinse, R.; Jones, S. B.; Bingham, G.; Bugbee, B.

2006-12-01

Rigorous management of restricted root zones utilizing coarse-textured porous media greatly benefits from optimizing the gas-water balance within plant-growth media. Geophysical techniques can help to quantify root- zone parameters like water content, air-filled porosity, temperature and nutrient concentration to better address the root systems performance. The efficiency of plant growth amid high root densities and limited volumes is critically linked to maintaining a favorable water content/air-filled porosity balance while considering adequate fluxes to replenish water at decreasing hydraulic conductivities during uptake. Volumes adjacent to roots also need to be optimized to provide adequate nutrients throughout the plant's life cycle while avoiding excessive salt concentrations. Our objectives were to (1) design and model an optimized root zone system using optimized porous media layers, (2) verify our design by monitoring the water content distribution and tracking nutrient release and transport, and (3) mimic water and nutrient uptake using plants or wicks to draw water from the root system. We developed a unique root-zone system using layered Ottawa sands promoting vertically uniform water contents and air-filled porosities. Watering was achieved by maintaining a shallow saturated layer at the bottom of the column and allowing capillarity to draw water upward, where coarser particle sizes formed the bottom layers with finer particles sizes forming the layers above. The depth of each layer was designed to optimize water content based on measurements and modeling of the wetting water retention curves. Layer boundaries were chosen to retain saturation between 50 and 85 percent. The saturation distribution was verified by dual-probe heat-pulse water-content sensors. The nutrient experiment involved embedding slow release fertilizer in the porous media in order to detect variations in electrical resistivity versus time during the release, diffusion and uptake of nutrients. The experiment required a specific geometry for the acquisition of ERT data using the heat-pulse water-content sensor's steel needles as electrodes. ERT data were analyzed using the sensed water contents and deriving pore-water resistivities using Archie's law. This design should provide a more optimal root-zone environment by maintaining a more uniform water content and on-demand supply of water than designs with one particle size at all column heights. The monitoring capability offers an effective means to describe the relationship between root-system performance and plant growth.

Methylmercury production in and export from agricultural wetlands in California, USA: the need to account for physical transport processes into and out of the root zone

USGS Publications Warehouse

Bachand, Philip A.M.; Bachand, Sandra M.; Fleck, Jacob A.; Alpers, Charles N.; Stephenson, Mark; Windham-Myers, Lisamarie

2014-01-01

Concentration and mass balance analyses were used to quantify methylmercury (MeHg) loads from conventional (white) rice, wild rice, and fallowed fields in northern California's Yolo Bypass. These analyses were standardized against chloride to distinguish transport pathways and net ecosystem production (NEP). During summer, chloride loads were both exported with surface water and moved into the root zone at a 2:1 ratio. MeHg and dissolved organic carbon (DOC) behaved similarly with surface water and root zone exports at ~ 3:1 ratio. These trends reversed in winter with DOC, MeHg, and chloride moving from the root zone to surface waters at rates opposite and exceeding summertime root zone fluxes. These trends suggest that summer transpiration advectively moves constituents from surface water into the root zone, and winter diffusion, driven by concentration gradients, subsequently releases those constituents into surface waters. The results challenge a number of paradigms regarding MeHg. Specifically, biogeochemical conditions favoring microbial MeHg production do not necessarily translate to synchronous surface water exports; MeHg may be preserved in the soils allowing for release at a later time; and plants play a role in both biogeochemistry and transport. Our calculations show that NEP of MeHg occurred during both summer irrigation and winter flooding. Wild rice wet harvesting and winter flooding of white rice fields were specific practices that increased MeHg export, both presumably related to increased labile organic carbon and disturbance. Outflow management during these times could reduce MeHg exports. Standardizing MeHg outflow:inflow concentration ratios against natural tracers (e.g. chloride, EC) provides a simple tool to identify NEP periods. Summer MeHg exports averaged 0.2 to 1 μg m− 2 for the different agricultural wetland fields, depending upon flood duration. Average winter MeHg exports were estimated at 0.3 μg m− 2. These exports are within the range reported for other shallow aquatic systems.

Methylmercury production in and export from agricultural wetlands in California, USA: the need to account for physical transport processes into and out of the root zone.

PubMed

Bachand, P A M; Bachand, S M; Fleck, J A; Alpers, C N; Stephenson, M; Windham-Myers, L

2014-02-15

Concentration and mass balance analyses were used to quantify methylmercury (MeHg) loads from conventional (white) rice, wild rice, and fallowed fields in northern California's Yolo Bypass. These analyses were standardized against chloride to distinguish transport pathways and net ecosystem production (NEP). During summer, chloride loads were both exported with surface water and moved into the root zone at a 2:1 ratio. MeHg and dissolved organic carbon (DOC) behaved similarly with surface water and root zone exports at ~3:1 ratio. These trends reversed in winter with DOC, MeHg, and chloride moving from the root zone to surface waters at rates opposite and exceeding summertime root zone fluxes. These trends suggest that summer transpiration advectively moves constituents from surface water into the root zone, and winter diffusion, driven by concentration gradients, subsequently releases those constituents into surface waters. The results challenge a number of paradigms regarding MeHg. Specifically, biogeochemical conditions favoring microbial MeHg production do not necessarily translate to synchronous surface water exports; MeHg may be preserved in the soils allowing for release at a later time; and plants play a role in both biogeochemistry and transport. Our calculations show that NEP of MeHg occurred during both summer irrigation and winter flooding. Wild rice wet harvesting and winter flooding of white rice fields were specific practices that increased MeHg export, both presumably related to increased labile organic carbon and disturbance. Outflow management during these times could reduce MeHg exports. Standardizing MeHg outflow:inflow concentration ratios against natural tracers (e.g. chloride, EC) provides a simple tool to identify NEP periods. Summer MeHg exports averaged 0.2 to 1 μg m(-2) for the different agricultural wetland fields, depending upon flood duration. Average winter MeHg exports were estimated at 0.3 μg m(-2). These exports are within the range reported for other shallow aquatic systems. Copyright © 2013 Elsevier B.V. All rights reserved.

Root Transcriptomic Analysis Revealing the Importance of Energy Metabolism to the Development of Deep Roots in Rice (Oryza sativa L.).

PubMed

Lou, Qiaojun; Chen, Liang; Mei, Hanwei; Xu, Kai; Wei, Haibin; Feng, Fangjun; Li, Tiemei; Pang, Xiaomeng; Shi, Caiping; Luo, Lijun; Zhong, Yang

2017-01-01

Drought is the most serious abiotic stress limiting rice production, and deep root is the key contributor to drought avoidance. However, the genetic mechanism regulating the development of deep roots is largely unknown. In this study, the transcriptomes of 74 root samples from 37 rice varieties, representing the extreme genotypes of shallow or deep rooting, were surveyed by RNA-seq. The 13,242 differentially expressed genes (DEGs) between deep rooting and shallow rooting varieties (H vs. L) were enriched in the pathway of genetic information processing and metabolism, while the 1,052 DEGs between the deep roots and shallow roots from each of the plants (D vs. S) were significantly enriched in metabolic pathways especially energy metabolism. Ten quantitative trait transcripts (QTTs) were identified and some were involved in energy metabolism. Forty-nine candidate DEGs were confirmed by qRT-PCR and microarray. Through weighted gene co-expression network analysis (WGCNA), we found 18 hub genes. Surprisingly, all these hub genes expressed higher in deep roots than in shallow roots, furthermore half of them functioned in energy metabolism. We also estimated that the ATP production in the deep roots was faster than shallow roots. Our results provided a lot of reliable candidate genes to improve deep rooting, and firstly highlight the importance of energy metabolism to the development of deep roots.

Root Transcriptomic Analysis Revealing the Importance of Energy Metabolism to the Development of Deep Roots in Rice (Oryza sativa L.)

PubMed Central

Lou, Qiaojun; Chen, Liang; Mei, Hanwei; Xu, Kai; Wei, Haibin; Feng, Fangjun; Li, Tiemei; Pang, Xiaomeng; Shi, Caiping; Luo, Lijun; Zhong, Yang

2017-01-01

Drought is the most serious abiotic stress limiting rice production, and deep root is the key contributor to drought avoidance. However, the genetic mechanism regulating the development of deep roots is largely unknown. In this study, the transcriptomes of 74 root samples from 37 rice varieties, representing the extreme genotypes of shallow or deep rooting, were surveyed by RNA-seq. The 13,242 differentially expressed genes (DEGs) between deep rooting and shallow rooting varieties (H vs. L) were enriched in the pathway of genetic information processing and metabolism, while the 1,052 DEGs between the deep roots and shallow roots from each of the plants (D vs. S) were significantly enriched in metabolic pathways especially energy metabolism. Ten quantitative trait transcripts (QTTs) were identified and some were involved in energy metabolism. Forty-nine candidate DEGs were confirmed by qRT-PCR and microarray. Through weighted gene co-expression network analysis (WGCNA), we found 18 hub genes. Surprisingly, all these hub genes expressed higher in deep roots than in shallow roots, furthermore half of them functioned in energy metabolism. We also estimated that the ATP production in the deep roots was faster than shallow roots. Our results provided a lot of reliable candidate genes to improve deep rooting, and firstly highlight the importance of energy metabolism to the development of deep roots. PMID:28798764

Anchorage failure of young trees in sandy soils is prevented by a rigid central part of the root system with various designs

PubMed Central

Danquechin Dorval, Antoine; Meredieu, Céline; Danjon, Frédéric

2016-01-01

Background and Aims Storms can cause huge damage to European forests. Even pole-stage trees with 80-cm rooting depth can topple. Therefore, good anchorage is needed for trees to survive and grow up from an early age. We hypothesized that root architecture is a predominant factor determining anchorage failure caused by strong winds. Methods We sampled 48 seeded or planted Pinus pinaster trees of similar aerial size from four stands damaged by a major storm 3 years before. The trees were gathered into three classes: undamaged, leaning and heavily toppled. After uprooting and 3D digitizing of their full root architectures, we computed the mechanical characteristics of the main components of the root system from our morphological measurements. Key Results Variability in root architecture was quite large. A large main taproot, either short and thick or long and thin, and guyed by a large volume of deep roots, was the major component that prevented stem leaning. Greater shallow root flexural stiffness mainly at the end of the zone of rapid taper on the windward side also prevented leaning. Toppling in less than 90-cm-deep soil was avoided in trees with a stocky taproots or with a very big leeward shallow root. Toppled trees also had a lower relative root biomass – stump excluded – than straight trees. Conclusions It was mainly the flexural stiffness of the central part of the root system that secured anchorage, preventing a weak displacement of the stump. The distal part of the longest taproot and attached deep roots may be the only parts of the root system contributing to anchorage through their maximum tensile load. Several designs provided good anchorage, depending partly on available soil depth. Pole-stage trees are in-between the juvenile phase when they fail by toppling and the mature phase when they fail by uprooting. PMID:27456136

High-precision measurements of wetland sediment elevation. II The rod surface elevation table

USGS Publications Warehouse

Cahoon, D.R.; Lynch, J.C.; Perez, B.C.; Segura, B.; Holland, R.D.; Stelly, C.; Stephenson, G.; Hensel, P.

2002-01-01

A new high-precision device for measuring sediment elevation in emergent and shallow water wetland systems is described. The rod surface-elevation table (RSET) is a balanced, lightweight mechanical leveling device that attaches to both shallow ( 1 m in order to be stable. The pipe is driven to refusal but typically to a depth shallower than the rod bench mark because of greater surface resistance of the pipe. Thus, the RSET makes it possible to partition change in sediment elevation over shallower (e.g., the root zone) and deeper depths of the sediment profile than is possible with the SET. The confidence intervals for the height of an individual pin measured by two different operators with the RSET under laboratory conditions were A? 1.0 and A? 1.5 mm. Under field conditions, confidence intervals for the measured height of an individual pin ranged from A? 1.3 mm in a mangrove forest up to A? 4.3 mm in a salt marsh.

Holistic irrigation water management approach based on stochastic soil water dynamics

NASA Astrophysics Data System (ADS)

Alizadeh, H.; Mousavi, S. J.

2012-04-01

Appreciating the essential gap between fundamental unsaturated zone transport processes and soil and water management due to low effectiveness of some of monitoring and modeling approaches, this study presents a mathematical programming model for irrigation management optimization based on stochastic soil water dynamics. The model is a nonlinear non-convex program with an economic objective function to address water productivity and profitability aspects in irrigation management through optimizing irrigation policy. Utilizing an optimization-simulation method, the model includes an eco-hydrological integrated simulation model consisting of an explicit stochastic module of soil moisture dynamics in the crop-root zone with shallow water table effects, a conceptual root-zone salt balance module, and the FAO crop yield module. Interdependent hydrology of soil unsaturated and saturated zones is treated in a semi-analytical approach in two steps. At first step analytical expressions are derived for the expected values of crop yield, total water requirement and soil water balance components assuming fixed level for shallow water table, while numerical Newton-Raphson procedure is employed at the second step to modify value of shallow water table level. Particle Swarm Optimization (PSO) algorithm, combined with the eco-hydrological simulation model, has been used to solve the non-convex program. Benefiting from semi-analytical framework of the simulation model, the optimization-simulation method with significantly better computational performance compared to a numerical Mote-Carlo simulation-based technique has led to an effective irrigation management tool that can contribute to bridging the gap between vadose zone theory and water management practice. In addition to precisely assessing the most influential processes at a growing season time scale, one can use the developed model in large scale systems such as irrigation districts and agricultural catchments. Accordingly, the model has been applied in Dasht-e-Abbas and Ein-khosh Fakkeh Irrigation Districts (DAID and EFID) of the Karkheh Basin in southwest of Iran. The area suffers from the water scarcity problem and therefore the trade-off between the level of deficit and economical profit should be assessed. Based on the results, while the maximum net benefit has been obtained for the stress-avoidance (SA) irrigation policy, the highest water profitability, defined by economical net benefit gained from unit irrigation water volume application, has been resulted when only about 60% of water used in the SA policy is applied.

Reliance on shallow soil water in a mixed-hardwood forest in central Pennsylvania.

PubMed

Gaines, Katie P; Stanley, Jane W; Meinzer, Frederick C; McCulloh, Katherine A; Woodruff, David R; Chen, Weile; Adams, Thomas S; Lin, Henry; Eissenstat, David M

2016-04-01

We investigated depth of water uptake of trees on shale-derived soils in order to assess the importance of roots over a meter deep as a driver of water use in a central Pennsylvania catchment. This information is not only needed to improve basic understanding of water use in these forests but also to improve descriptions of root function at depth in hydrologic process models. The study took place at the Susquehanna Shale Hills Critical Zone Observatory in central Pennsylvania. We asked two main questions: (i) Do trees in a mixed-hardwood, humid temperate forest in a central Pennsylvania catchment rely on deep roots for water during dry portions of the growing season? (ii) What is the role of tree genus, size, soil depth and hillslope position on the depth of water extraction by trees? Based on multiple lines of evidence, including stable isotope natural abundance, sap flux and soil moisture depletion patterns with depth, the majority of water uptake during the dry part of the growing season occurred, on average, at less than ∼60 cm soil depth throughout the catchment. While there were some trends in depth of water uptake related to genus, tree size and soil depth, water uptake was more uniformly shallow than we expected. Our results suggest that these types of forests may rely considerably on water sources that are quite shallow, even in the drier parts of the growing season. © The Author 2015. Published by Oxford University Press.

Reliance on shallow soil water in a mixed-hardwood forest in central Pennsylvania

PubMed Central

Gaines, Katie P.; Stanley, Jane W.; Meinzer, Frederick C.; McCulloh, Katherine A.; Woodruff, David R.; Chen, Weile; Adams, Thomas S.; Lin, Henry; Eissenstat, David M.

2016-01-01

We investigated depth of water uptake of trees on shale-derived soils in order to assess the importance of roots over a meter deep as a driver of water use in a central Pennsylvania catchment. This information is not only needed to improve basic understanding of water use in these forests but also to improve descriptions of root function at depth in hydrologic process models. The study took place at the Susquehanna Shale Hills Critical Zone Observatory in central Pennsylvania. We asked two main questions: (i) Do trees in a mixed-hardwood, humid temperate forest in a central Pennsylvania catchment rely on deep roots for water during dry portions of the growing season? (ii) What is the role of tree genus, size, soil depth and hillslope position on the depth of water extraction by trees? Based on multiple lines of evidence, including stable isotope natural abundance, sap flux and soil moisture depletion patterns with depth, the majority of water uptake during the dry part of the growing season occurred, on average, at less than ∼60 cm soil depth throughout the catchment. While there were some trends in depth of water uptake related to genus, tree size and soil depth, water uptake was more uniformly shallow than we expected. Our results suggest that these types of forests may rely considerably on water sources that are quite shallow, even in the drier parts of the growing season. PMID:26546366

Effects of tree roots on shallow landslides distribution and frequency in the European Alps using a new physically-based discrete element model

NASA Astrophysics Data System (ADS)

Cohen, Denis; Schwarz, Massimiliano

2017-04-01

Shallow landslides are hillslope processes that play a key role in shaping landscapes in forested catchments. Shallow landslides are, in some regions, the dominant regulating mechanisms by which soil is delivered from the hillslopes to steep channels and fluvial systems. Several studies have highlighted the importance of roots to better understand mechanisms of root reinforcement and their contributions to the stabilization of hillslopes. In this context, the spatio-temporal distribution of root reinforcement has a major repercussion on the dynamic of sediment transport at the catchment scale and on the availability of productive soils. Here we present a new model for shallow slope stability calculations, SOSlope, that specifically considers the effects of root reinforcement on shallow landslide initiation. The model is a strain-step discrete element model that reproduces the self-organized redistribution of forces on a slope during rainfall-triggered shallow landslides. Tree roots govern tensile and compressive force redistribution and determine the stability of the slope, the timing, location, and dimension of the failure mass. We use SOSlope to quantify the role of protection forest in several localities in the European Alps, making use of detailed field measurements of root densities and root-size distribution, and root tensile and compressive strength for three species common in the Alps (spruce, fir, and beech) to compute landslide distributions and frequency during landslide-triggering rainfall events. We show the mechanisms by which tree roots impart reinforcement to slopes and offer protection against shallow landslides.

Style of extensional tectonism during rifting, Red Sea and Gulf of Aden

USGS Publications Warehouse

Bohannon, R.G.

1989-01-01

Geologic and geophysical studies from the Arabian continental margin in the southern Red Sea and LANDSAT analysis of the northern Somalia margin in the Gulf of Aden suggest that the early continental rifts were long narrow features that formed by extension on closely spaced normal faults above moderate- to shallow-dipping detachments with break-away zones defining one rift flank and root zones under the opposing rift flank. The rift flanks presently form the opposing continental margins across each ocean basin. The detachment on the Arabian margin dips gently to the west, with a breakaway zone now eroded above the deeply dissected terrain of the Arabian escarpment. A model is proposed in which upper crustal breakup occurs on large detachment faults that have a distinct polarity. -from Author

Variable rate application of nematicides on cotton fields: a promising site-specific management strategy.

PubMed

Ortiz, Brenda V; Perry, Calvin; Sullivan, Dana; Lu, Ping; Kemerait, Robert; Davis, Richard F; Smith, Amanda; Vellidis, George; Nichols, Robert

2012-03-01

Field tests were conducted to determine if differences in response to nematicide application (i.e., root-knot nematode (RKN) populations, cotton yield, and profitability) occurred among RKN management zones (MZ). The MZ were delineated using fuzzy clustering of five terrain (TR) and edaphic (ED) field features related to soil texture: apparent soil electrical conductivity shallow (ECa-shallow) and deep (ECa-deep), elevation (EL), slope (SL), and changes in bare soil reflectance. Zones with lowest mean values of ECa- shallow, ECa- deep, NDVI, and SL were designated as at greater risk for high RKN levels. Nematicide-treated plots (4 rows wide and 30 m long) were established in a randomized complete block design within each zone, but the number of replications in each zone varied from four to six depending on the size of the zone.The nematicides aldicarb (Temik 15 G) and 1,3-dichloropropene (1,3-D,Telone II) were applied at two rates (0.51 and 1.0 kg a.i./ha for aldicarb, and 33.1 and 66.2 kg a.i./ha for 1,3-D) to RKN MZ in commercial fields between 2007 and 2009. A consolidated analysis over the entire season showed that regardless of the zone, there were not differences between aldicarb rates and 1,3-D rates. The result across zones showed that 1,3-D provided better RKN control than did aldicarb in zones with low ECa values (high RKN risk zones exhibiting more coarse-textured sandy soils). In contrast, in low risk zones with relatively higher ECa values (heavier textured soil), the effects of 1,3-D and aldicarb were equal and application of any of the treatments provided sufficient control. In low RKN risk zones, a farmer would often have lost money if a high rate of 1,3-D was applied. This study showed that the effect of nematicide type and rate on RKN control and cotton yield varied across management zones (MZ) with the most expensive treatment likely to provide economic benefit only in zones with coarser soil texture. This study demonstrates the value of site specific application of nematicides based on management zones, although this approach might not be economically beneficial in fields with little variability in soil texture.

Estimating evapotranspiration in natural and constructed wetlands

USGS Publications Warehouse

Lott, R. Brandon; Hunt, Randall J.

2001-01-01

Difficulties in accurately calculating evapotranspiration (ET) in wetlands can lead to inaccurate water balances—information important for many compensatory mitigation projects. Simple meteorological methods or off-site ET data often are used to estimate ET, but these approaches do not include potentially important site-specific factors such as plant community, root-zone water levels, and soil properties. The objective of this study was to compare a commonly used meterological estimate of potential evapotranspiration (PET) with direct measurements of ET (lysimeters and water-table fluctuations) and small-scale root-zone geochemistry in a natural and constructed wetland system. Unlike what has been commonly noted, the results of the study demonstrated that the commonly used Penman combination method of estimating PET underestimated the ET that was measured directly in the natural wetland over most of the growing season. This result is likely due to surface heterogeneity and related roughness efffects not included in the simple PET estimate. The meterological method more closely approximated season-long measured ET rates in the constructed wetland but may overestimate the ET rate late in the growing season. ET rates also were temporally variable in wetlands over a range of time scales because they can be influenced by the relation of the water table to the root zone and the timing of plant senescence. Small-scale geochemical sampling of the shallow root zone was able to provide an independent evaluation of ET rates, supporting the identification of higher ET rates in the natural wetlands and differences in temporal ET rates due to the timing of senescence. These discrepancies illustrate potential problems with extrapolating off-site estimates of ET or single measurements of ET from a site over space or time.

Agricultural conservation planning framework: 2. Classification of riparian buffer design types with application to assess and map stream corridors.

PubMed

Tomer, M D; Boomer, K M B; Porter, S A; Gelder, B K; James, D E; McLellan, E

2015-05-01

A watershed's riparian corridor presents opportunities to stabilize streambanks, intercept runoff, and influence shallow groundwater with riparian buffers. This paper presents a system to classify these riparian opportunities and apply them toward riparian management planning in hydrologic unit code 12 watersheds. In two headwater watersheds from each of three landform regions found in Iowa and Illinois, high-resolution (3-m grid) digital elevation models were analyzed to identify spatial distributions of surface runoff contributions and zones with shallow water tables (SWTs) (within 1.5 m of the channel elevation) along the riparian corridors. Results were tabulated, and a cross classification was applied. Classes of buffers include those primarily placed to (i) trap runoff and sediment, (ii) influence shallow groundwater, (iii) address both runoff and shallow groundwater, and (iv) maintain/improve stream bank stability. Riparian buffers occupying about 2.5% of these six watersheds could effectively intercept runoff contributions from 81 to 94% of the watersheds' contributing areas. However, extents of riparian zones where a narrow buffer (<10 m wide) would adequately intercept runoff but where >25 m width of buffer vegetation could root to a SWT varied according to landform region ( < 0.10). Yet, these wide-SWT riparian zones were widespread and occupied 23 to 53% of the lengths of stream banks among the six watersheds. The wide-SWT setting provides opportunities to reduce dissolved nutrients (particularly NO-N) carried via groundwater. This riparian classification and mapping system is part of a ArcGIS toolbox and could provide a consistent basis to identify riparian management opportunities in Midwestern headwater catchments wherever high-resolution elevation data are available. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Multiscale geophysical imaging of the critical zone

USGS Publications Warehouse

Parsekian, Andy; Singha, Kamini; Minsley, Burke J.; Holbrook, W. Steven; Slater, Lee

2015-01-01

Details of Earth's shallow subsurface—a key component of the critical zone (CZ)—are largely obscured because making direct observations with sufficient density to capture natural characteristic spatial variability in physical properties is difficult. Yet this inaccessible region of the CZ is fundamental to processes that support ecosystems, society, and the environment. Geophysical methods provide a means for remotely examining CZ form and function over length scales that span centimeters to kilometers. Here we present a review highlighting the application of geophysical methods to CZ science research questions. In particular, we consider the application of geophysical methods to map the geometry of structural features such as regolith thickness, lithological boundaries, permafrost extent, snow thickness, or shallow root zones. Combined with knowledge of structure, we discuss how geophysical observations are used to understand CZ processes. Fluxes between snow, surface water, and groundwater affect weathering, groundwater resources, and chemical and nutrient exports to rivers. The exchange of gas between soil and the atmosphere have been studied using geophysical methods in wetland areas. Indirect geophysical methods are a natural and necessary complement to direct observations obtained by drilling or field mapping. Direct measurements should be used to calibrate geophysical estimates, which can then be used to extrapolate interpretations over larger areas or to monitor changing processes over time. Advances in geophysical instrumentation and computational approaches for integrating different types of data have great potential to fill gaps in our understanding of the shallow subsurface portion of the CZ and should be integrated where possible in future CZ research.

Organic Compounds Complexify Transport in the Amargosa Desert—The Case for Phytotritiation

NASA Astrophysics Data System (ADS)

Stonestrom, D. A.; Luo, W.; Andraski, B. J.; Baker, R. J.; Maples, S.; Mayers, C. J.; Young, M. B.

2014-12-01

Civilian low-level radioactive waste containing organic compounds was disposed in 2- to 15-m deep unlined trenches in a 110-m deep unsaturated zone at the present-day USGS Amargosa Desert Research Site. Tritium represents the plurality of disposed activity. A plume of gas-phase contaminants surrounds the disposal area, with 60 distinct volatile organic compounds (VOCs) identified to date. The distribution of tritiated water in the unsaturated zone surrounding the disposal area is highly enigmatic, with orders of magnitude separating observed levels from those predicted by multiphase models of mass and energy transport. Peaks of tritium and VOCs are coincidently located in sediments tens of meters below the root zone, suggesting abiotic stratigraphic control on lateral transport at depth. Surprisingly, the highest observed levels of tritium occur at a depth of about 1.5 m, the base of the creosote-bush plant-community root zone, where levels of waste-derived VOCs are low (approaching atmospheric levels). Bulk water-vapor samples from shallow and deep unsaturated-zone profile hot spots were trapped as water ice in cold fingers immersed in dry ice-isopropyl alcohol filled Dewar flasks, then melted and sequentially extracted by purge-and-trap VOC degassing followed by elution through activated carbon solid-phase extraction (SPE) cartridges. Analysis of tritium activities and mass spectrometer results indicate that over 98% of tritium activity at depth is present as water, whereas about 15% of basal root zone tritium activity is present as organic compounds trapped with the water. Of these, the less-volatile compound group removed by SPE accounted for about 85% of the organic tritium activity, with mass spectrometry identifying 2-ethyl-1-hexanol as the principal compound removed. This plant-produced fatty alcohol is ubiquitous in the root zone of creosote-bush communities and represents a family of hydroxyl-containing plant produced compounds that give the plants their pungency. These findings suggest that tritiated hydroxyl groups on plant-produced organic compounds provide an important reservoir and pathway for tritium transport.

Might rock moisture in shallow fractured bedrock underlying hillslopes provide vegetation resilience to future droughts?

NASA Astrophysics Data System (ADS)

Dietrich, W. E.; Dawson, T. E.; Salve, R.; Simonin, K. A.; Oshun, J.; Rempe, D.; Fung, I.

2009-12-01

Hilly and mountainous landscapes are often capped by relatively thin soil that mantles a thicker, but nonetheless relatively shallow fractured bedrock zone. The few studies that have quantitatively explored this near-surface zone have demonstrated that subsurface runoff, saturation overland flow, and pore pressure development are dominated by pathways through the bedrock—not through the soil. Hence, evolution of this weathered fractured zone, and its spatial variation strongly influences hydrologic and geomorphic processes. Here we report findings at a new study site (“Rivendell”) in the South Fork Eel River watershed in the Northern Coastal California area, where periods of essentially no rain can extend 5 to 6 months, yet 60 m tall conifer trees can prosper and continuous baseflow in modest sized drainages can sustain aquatic ecosystems. Dominant vegetation in the region correlates with lithology and we hypothesize that it is the extent of development of the shallow fractured bedrock that controls this relationship. To explore the linkages between climate, vegetation, and hydrology as mediated by bedrock conditions we have instrumented a 4000 m2 steep (32 degree) catchment under old-growth Douglas fir forest with a large number (over 300) of devices including rain gauges, temperature, humidity and soil moisture probes, TDR arrays, sap flow monitors and pressure transducers in wells—all of which report via a wireless solar powered system back to Berkeley for effectively real-time monitoring. Electrical resistivity tomography surveys have been repeatedly performed. Seven deep (up to 30 m) wells along the catchment reveal a ~20 m thick weathered, fractured bedrock zone that tapers downslope to about 7 m. Two years of monitoring show that all water passes through the shallow soil into the bedrock zone where it eventually collects at the base of the fracture zone, forming a dynamic perched groundwater table that generates storm runoff and slowly drops during the summer (controlling river baseflow). Sap flow measurements show strong seasonal response, and flow reversal, i.e. flow returning to the feeding root system at night. Together these data suggest the hypotheses that: 1) in the dry summers trees use “hydraulic lift” to exploit seasonally recharged rock moisture at depth (in the unsaturated zone above the groundwater table) and store this water in the soil in the evening (possibly benefiting lower canopy plants), 2) this process could provide a forest ecosystem resilience to the expanding droughts anticipated for California, and 3) available rock moisture depends on rock type and whether the shallow fractured rock zone develops. Rock moisture is missing from global climate models, and its availability to plants may strongly influence vegetation response and changes in regional climate.

Soil Water and Shallow Groundwater Relations in an Agricultural Hillslope

NASA Astrophysics Data System (ADS)

Logsdon, S. D.; Schilling, K. E.

2007-12-01

Shallow water tables contribute to soil water variations under rolling topography, and soil properties contribute to shallow water table fluctutations. Preferential flow through large soil pores can cause a rise in the water table with little increase in soil water except near the soil surface. Lateral groundwater flow can cause a large rise in water table at toeslope and depressional landscape positions. As plants transpire, water can move up into the root zone from the water table and wet soil below the root zone. Roots can utilize water in the capillary fringe. The purpose of this study was to interface automated measurements of soil water content and water table depth for determining the importance of drainage and upward movement. In 2006 soil water and water table depth were monitored at three positions: shoulder, backslope, and toeslope. Neutron access tubes were manually monitored to 2.3 m depth, and automated soil moisture was measured using CS616 probes installed at 0.3, 0.5, 0.7, and 0.9 m depth. Water table depths were monitored manually and automated, but the automated measurements failed during the season at two sites. In 2007, similar measurements were made at one toeslope position, but the CS616 probes were installed at nine depths and better quality automated well depth equipment was used. The 2006 data revealed little landscape position effect on daytime soil water loss on a wetter date; however, on a dry day just before a rain, daytime water loss was greatest for the toeslope positon and least for the shoulder position. After a period of intense rain, a rapid and significant water table rise occurred at the toeslope position but little water table rise occurred at the other landscape positions. The rapid toeslope water table rise was likely caused by lateral groundwater flow whereas minor water table rise at the other positions was likely due to preferential flow since the soil had not wet up below 0.6 m. Use of automated equipment has improved our understanding of the relations of soil water to water table fluctuations in an agricultural field.

Basaltic Diatreme To Root Zone Volcanic Processes In Tuzo Kimberlite Pipe (Gahcho Kué Kimberlite Field, NWT, Canada)

NASA Astrophysics Data System (ADS)

Seghedi, I.; Kurszlaukis, S.; Maicher, D.

2009-05-01

Tuzo pipe is infilled by a series of coherent and fragmental kimberlite facies types typical for a diatreme to root zone transition level. Coherent or transitional coherent kimberlite facies dominate at depth, but also occur at shallow levels, either as dikes or as individual or agglutinated coherent kimberlite clasts (CKC). Several fragmental kimberlite varieties fill the central and shallow portions of the pipe. The definition, geometry and extent of the geological units are complex and are controlled by vertical elements. Specific for Tuzo is: (1) high abundance of locally derived xenoliths (granitoids and minor diabase) between and within the kimberlite phases, varying in size from sub-millimeter to several tens of meters, frequent in a belt-like domain between 120-200 m depth in the pipe; (2) the general presence of CKC, represented by round-subround, irregular to amoeboid-shaped clasts with a macrocrystic or aphanitic texture, mainly derived from fragmentation of erupting magma and less commonly from previously solidified kimberlite, as well as recycled pyroclasts. In addition, some CKC are interpreted to be intersections of a complex dike network. This diversity attests formation by various volcanic processes, extending from intrusive to explosive; (3) the presence of bedded polymict wall- rock and kimberlite breccia occurring mostly in deep levels of the pipe below 345 m depth. The gradational contact relationships of these deposits with the surrounding kimberlite rocks and their location suggest that they formed in situ. The emplacement of Tuzo pipe involved repetitive volcanic explosions alternating with periods of relative quiescence causing at least partial consolidation of some facies. The volume deficit in the diatreme-root zone after each eruption was compensated by gravitational collapse of overlying diatreme tephra and pre-fragmented wall-rock xenoliths. Highly explosive phases were alternating with weak explosions or intrusive phases, suggesting an external factor to control the explosive behaviour of the magma. The overall constant volatile content of the kimberlite does not explain the observed extreme change in emplacement behaviour. The facies architecture of fragmental facies dominated by vertical elements is similar to that in non- kimberlitic diatremes and indicates deposition from debris jets marking separate and repeated explosive volcanic events. In basaltic pipes, such jets are generated by phreatomagmatic explosions in the explosion chamber(s) of the root zone, causing abundant country rock fragmentation and further efficient mixture of the various particles. Phases of high explosivity formed the finely fragmented kimberlites containing a high percentage of wall-rock xenoliths, while the fluidal-shaped and partly welded texturally variable and wall-rock- poor transitional coherent facies suggest phases of repetitive, hot, and low-energy fragmentation forming kimberlite spatter. Peperite hosted in kimberlite tephra is also typically found in basaltic root zones. Time gaps in between volcanic eruptive periods are indicated by cognate pyroclasts and reworked wall-rock deposits emplaced by sporadic sedimentation events in subterranean cavities under the widening roof of the pipe. The presence of temporary caves in the root zone is proposed also by the occurrence of spherical CKC in deep- seated fragmental kimberlite and by spatter found in transitional coherent rocks. Evidence for caves was mostly preserved at deeper pipe levels advocating continuously recurring processes during the life span of Tuzo.

Anchorage failure of young trees in sandy soils is prevented by a rigid central part of the root system with various designs.

PubMed

Danquechin Dorval, Antoine; Meredieu, Céline; Danjon, Frédéric

2016-07-25

Storms can cause huge damage to European forests. Even pole-stage trees with 80-cm rooting depth can topple. Therefore, good anchorage is needed for trees to survive and grow up from an early age. We hypothesized that root architecture is a predominant factor determining anchorage failure caused by strong winds. We sampled 48 seeded or planted Pinus pinaster trees of similar aerial size from four stands damaged by a major storm 3 years before. The trees were gathered into three classes: undamaged, leaning and heavily toppled. After uprooting and 3D digitizing of their full root architectures, we computed the mechanical characteristics of the main components of the root system from our morphological measurements. Variability in root architecture was quite large. A large main taproot, either short and thick or long and thin, and guyed by a large volume of deep roots, was the major component that prevented stem leaning. Greater shallow root flexural stiffness mainly at the end of the zone of rapid taper on the windward side also prevented leaning. Toppling in less than 90-cm-deep soil was avoided in trees with a stocky taproots or with a very big leeward shallow root. Toppled trees also had a lower relative root biomass - stump excluded - than straight trees. It was mainly the flexural stiffness of the central part of the root system that secured anchorage, preventing a weak displacement of the stump. The distal part of the longest taproot and attached deep roots may be the only parts of the root system contributing to anchorage through their maximum tensile load. Several designs provided good anchorage, depending partly on available soil depth. Pole-stage trees are in-between the juvenile phase when they fail by toppling and the mature phase when they fail by uprooting. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Effects of shallow water table, salinity and frequency of irrigation water on the date palm water use

NASA Astrophysics Data System (ADS)

Askri, Brahim; Ahmed, Abdelkader T.; Abichou, Tarek; Bouhlila, Rachida

2014-05-01

In southern Tunisia oases, waterlogging, salinity, and water shortage represent serious threats to the sustainability of irrigated agriculture. Understanding the interaction between these problems and their effects on root water uptake is fundamental for suggesting possible options of improving land and water productivity. In this study, HYDRUS-1D model was used in a plot of farmland located in the Fatnassa oasis to investigate the effects of waterlogging, salinity, and water shortage on the date palm water use. The model was calibrated and validated using experimental data of sap flow density of a date palm, soil hydraulic properties, water table depth, and amount of irrigation water. The comparison between predicted and observed data for date palm transpiration rates was acceptable indicating that the model could well estimate water consumption of this tree crop. Scenario simulations were performed with different water table depths, and salinities and frequencies of irrigation water. The results show that the impacts of water table depth and irrigation frequency vary according to the season. In summer, high irrigation frequency and shallow groundwater are needed to maintain high water content and low salinity of the root-zone and therefore to increase the date palm transpiration rates. However, these factors have no significant effect in winter. The results also reveal that irrigation water salinity has no significant effect under shallow saline groundwater.

Importance of Mangroves, Seagrass Beds and the Shallow Coral Reef as a Nursery for Important Coral Reef Fishes, Using a Visual Census Technique

NASA Astrophysics Data System (ADS)

Nagelkerken, I.; van der Velde, G.; Gorissen, M. W.; Meijer, G. J.; Van't Hof, T.; den Hartog, C.

2000-07-01

The nursery function of various biotopes for coral reef fishes was investigated on Bonaire, Netherlands Antilles. Length and abundance of 16 commercially important reef fish species were determined by means of visual censuses during the day in six different biotopes: mangrove prop-roots ( Rhizophora mangle) and seagrass beds ( Thalassia testudinum) in Lac Bay, and four depth zones on the coral reef (0 to 3 m, 3 to 5 m, 10 to 15 m and 15 to 20 m). The mangroves, seagrass beds and shallow coral reef (0 to 3 m) appeared to be the main nursery biotopes for the juveniles of the selected species. Mutual comparison between biotopes showed that the seagrass beds were the most important nursery biotope for juvenile Haemulon flavolineatum, H. sciurus, Ocyurus chrysurus, Acanthurus chirurgus and Sparisoma viride, the mangroves for juvenile Lutjanus apodus, L. griseus, Sphyraena barracuda and Chaetodon capistratus, and the shallow coral reef for juvenile H. chrysargyreum, L. mahogoni , A. bahianus and Abudefduf saxatilis. Juvenile Acanthurus coeruleus utilized all six biotopes, while juvenile H. carbonarium and Anisotremus surinamensis were not observed in any of the six biotopes. Although fishes showed a clear preference for a specific nursery biotope, most fish species utilized multiple nursery biotopes simultaneously. The almost complete absence of juveniles on the deeper reef zones indicates the high dependence of juveniles on the shallow water biotopes as a nursery. For most fish species an (partial) ontogenetic shift was observed at a particular life stage from their (shallow) nursery biotopes to the (deeper) coral reef. Cluster analyses showed that closely related species within the families Haemulidae, Lutjanidae and Acanthuridae, and the different size classes within species in most cases had a spatial separation in biotope utilization.

Evidence for direct water absorption by shallow-rooted desert plants in desert-oasis ecotone, Northwest China

NASA Astrophysics Data System (ADS)

Fang, Jing

2014-05-01

Besides the absorption by roots from the soil substrate, it has long been known that plants exhibit alternative water-absorption strategies, particularly in drought-prone environments. For many tropical epiphytic orchids, air moisture can be absorbed directly by aerial roots. Some conifers are also found to utilize air moisture by foliar absorption during the summer fog season. However, few studies have been carried out on the atmospheric water vapor absorption by shallow-rooted desert plants. We conducted experiments in desert-oasis ecotone and investigated the effects of dew absorbed by three kinds of shallow-rooted seedlings on net photosynthesis rate, as well as on other water relations variables. Three kinds of typical shallow-rooted desert species (Bassia dasyphylla, Salsola collina and Corispermum declinatum) have been chosen and potted. Each species were subjected to contrasting watering regimes (normal and deficient) and different air moisture conditions (having dew and having no dew) for 10 weeks. Net photosynthesis rate was measured on six occasions during the study. Other water relations variables (midday shoot water potential, relative water content, stomatal conductance) were also measured. Under the dew conditions, average net photosynthesis rate, shoot water potential, leaf relative water content and stomatal conductance increased, with greater responses observed for plants subjected to a deficient watering regime than for well-watered plants. These results indicated dew occurred in arid region could be utilized through foliar absorption by some shallow-rooted plants, and for the shallow-rooted plants, the presence of dew could significantly relieve the deficit of water in water-stressed regime.

Seasonal plant water uptake patterns in the saline southeast Everglades ecotone.

PubMed

Ewe, Sharon M L; Sternberg, Leonel da S L; Childers, Daniel L

2007-07-01

The purpose of this study was to determine the seasonal water use patterns of dominant macrophytes coexisting in the coastal Everglades ecotone. We measured the stable isotope signatures in plant xylem water of Rhizophora mangle, Cladium jamaicense, and Sesuvium portulacastrum during the dry (DS) and wet (WS) seasons in the estuarine ecotone along Taylor River in Everglades National Park, FL, USA. Shallow soilwater and deeper groundwater salinity was also measured to extrapolate the salinity encountered by plants at their rooting zone. Average soil water oxygen isotope ratios (delta(18)O) was enriched (4.8 +/- 0.2 per thousand) in the DS relative to the WS (0.0 +/- 0.1 per thousand), but groundwater delta(18)O remained constant between seasons (DS: 2.2 +/- 0.4 per thousand; WS: 2.1 +/- 0.1 per thousand). There was an inversion in interstitial salinity patterns across the soil profile between seasons. In the DS, shallow water was euhaline [i.e., 43 practical salinity units (PSU)] while groundwater was less saline (18 PSU). In the WS, however, shallow water was fresh (i.e., 0 PSU) but groundwater remained brackish (14 PSU). All plants utilized 100% (shallow) freshwater during the WS, but in the DS R. mangle switched to a soil-groundwater mix (delta 55% groundwater) while C. jamaicense and S. portulacastrum continued to use euhaline shallow water. In the DS, based on delta(18)O data, the roots of R. mangle roots were exposed to salinities of 25.4 +/- 1.4 PSU, less saline than either C. jamaicense (39.1 +/- 2.2 PSU) or S. portulacastrum (38.6 +/- 2.5 PSU). Although the salinity tolerance of C. jamaicense is not known, it is unlikely that long-term exposure to high salinity is conducive to the persistence of this freshwater marsh sedge. This study increases our ecological understanding of how water uptake patterns of individual plants can contribute to ecosystem levels changes, not only in the southeast saline Everglades, but also in estuaries in general in response to global sea level rise and human-induced changes in freshwater flows.

Effects of partial root-zone irrigation on hydraulic conductivity in the soil–root system of maize plants

PubMed Central

Hu, Tiantian; Kang, Shaozhong; Li, Fusheng; Zhang, Jianhua

2011-01-01

Effects of partial root-zone irrigation (PRI) on the hydraulic conductivity in the soil–root system (Lsr) in different root zones were investigated using a pot experiment. Maize plants were raised in split-root containers and irrigated on both halves of the container (conventional irrigation, CI), on one side only (fixed PRI, FPRI), or alternately on one of two sides (alternate PRI, APRI). Results show that crop water consumption was significantly correlated with Lsr in both the whole and irrigated root zones for all three irrigation methods but not with Lsr in the non-irrigated root zone of FPRI. The total Lsr in the irrigated root zone of two PRIs was increased by 49.0–92.0% compared with that in a half root zone of CI, suggesting that PRI has a significant compensatory effect of root water uptake. For CI, the contribution of Lsr in a half root zone to Lsr in the whole root zone was ∼50%. For FPRI, the Lsr in the irrigated root zone was close to that of the whole root zone. As for APRI, the Lsr in the irrigated root zone was greater than that of the non-irrigated root zone. In comparison, the Lsr in the non-irrigated root zone of APRI was much higher than that in the dried zone of FPRI. The Lsr in both the whole and irrigated root zones was linearly correlated with soil moisture in the irrigated root zone for all three irrigation methods. For the two PRI treatments, total water uptake by plants was largely determined by the soil water in the irrigated root zone. Nevertheless, the non-irrigated root zone under APRI also contributed to part of the total crop water uptake, but the continuously non-irrigated root zone under FPRI gradually ceased to contribute to crop water uptake, suggesting that it is the APRI that can make use of all the root system for water uptake, resulting in higher water use efficiency. PMID:21527627

Comparison of Rooting Strategies to Explore Rock Fractures for Shallow Soil-Adapted Tree Species with Contrasting Aboveground Growth Rates: A Greenhouse Microcosm Experiment.

PubMed

Nie, Yunpeng; Chen, Hongsong; Ding, Yali; Yang, Jing; Wang, Kelin

2017-01-01

For tree species adapted to shallow soil environments, rooting strategies that efficiently explore rock fractures are important because soil water depletion occurs frequently. However, two questions: (a) to what extent shallow soil-adapted species rely on exploring rock fractures and (b) what outcomes result from drought stress, have rarely been tested. Therefore, based on the expectation that early development of roots into deep soil layers is at the cost of aboveground growth, seedlings of three tree species ( Cyclobalanopsis glauca, Delavaya toxocarpa , and Acer cinnamomifolium ) with distinct aboveground growth rates were selected from a typical shallow soil region. In a greenhouse experiment that mimics the basic features of shallow soil environments, 1-year-old seedlings were transplanted into simulated microcosms of shallow soil overlaying fractured bedrock. Root biomass allocation and leaf physiological activities, as well as leaf δ 13 C values were investigated and compared for two treatments: regular irrigation and repeated cycles of drought stress. Our results show that the three species differed in their rooting strategies in the context of encountering rock fractures, however, these strategies were not closely related to the aboveground growth rate. For the slowest-growing seedling, C. glauca , percentages of root mass in the fractures, as well as in the soil layer between soil and bedrock increased significantly under both treatments, indicating a specialized rooting strategy that facilitated the exploration of rock fractures. Early investment in deep root growth was likely critical to the establishment of this drought-vulnerable species. For the intermediate-growing, A. cinnamomifolium , percentages of root mass in the bedrock and interface soil layers were relatively low and exhibited no obvious change under either treatment. This limited need to explore rock fractures was compensated by a conservative water use strategy. For the fast-growing, D. toxocarpa , percentages of root mass in the bedrock and interface layers increased simultaneously under drought conditions, but not under irrigated conditions. This drought-induced rooting plasticity was associated with drought avoidance by this species. Although, root development might have been affected by the simulated microcosm, contrasting results among the three species indicated that efficient use of rock fractures is not a necessary or specialized strategy of shallow-soil adapted species. The establishment and persistence of these species relied on the mutual complementation between their species-specific rooting strategies and drought adaptations.

The Cotoncello Shear Zone (Elba Island, Italy): The deep root of a fossil oceanic detachment fault in the Ligurian ophiolites

NASA Astrophysics Data System (ADS)

Frassi, Chiara; Musumeci, Giovanni; Zucali, Michele; Mazzarini, Francesco; Rebay, Gisella; Langone, Antonio

2017-05-01

The ophiolite sequences in the western Elba Island are classically interpreted as a well-exposed ocean-floor section emplaced during the Apennines orogeny at the top of the tectonic nappe-stack. Stratigraphic, petrological and geochemical features indicate that these ophiolite sequences are remnants of slow-ultraslow spreading oceanic lithosphere analogous to the present-day Mid-Atlantic Ridge and Southwest Indian Ridge. Within the oceanward section of Tethyan lithosphere exposed in the Elba Island, we investigated for the first time a ​10s of meters-thick structure, the Cotoncello Shear Zone (CSZ), that records high-temperature ductile deformation. We used a multidisciplinary approach to document the tectono-metamorphic evolution of the shear zone and its role during spreading of the western Tethys. In addition, we used zircon U-Pb ages to date formation of the gabbroic lower crust in this sector of the Apennines. Our results indicate that the CSZ rooted below the brittle-ductile transition at temperature above 800 °C. A high-temperature ductile fabric was overprinted by fabrics recorded during progressive exhumation up to shallower levers under temperature < 500 °C. We suggest that the CSZ may represent the deep root of a detachment fault that accomplished exhumation of an ancient oceanic core complex (OCC) in between two stages of magmatic accretion. We suggest that the CSZ represents an excellent on-land example enabling to assess relationships between magmatism and deformation when extensional oceanic detachments are at work.

Comparison of sap flux data from two instrumented tree species in a forested catchment with different levels of water stress

NASA Astrophysics Data System (ADS)

Hartsough, P. C.; Roudneva, E.; Malazian, A. I.; Meadows, M. W.; Kelly, A. E.; Bales, R. C.; Goulden, M.; Hopmans, J. W.

2011-12-01

Two trees were instrumented with heat pulse sapflux sensors in the Southern Sierra Critical Zone Observatory (SSCZO) within the Kings River Experimental Watershed (KREW) to better understand transpiration as it relates to water availability from deeper sources. At the first instrumented site, CZT-1, a White Fir (Abies concolor) was instrumented on a flat ridge with access to deep soil moisture. Extensive monitoring of shallow and deep soil regions confirm that there is significant soil water available from 100-400cm as the tree exhausts water from shallower depths. A root excavation of an adjacent tree shows the roots distributed from 30-150cm with limited roots available to access deeper soil water and water stored in the saprolite. At the second instrumented site, CZT-2, a Ponderosa Pine (Pinus Ponderosa) was instrumented with a similar suite of sap flow and soil sensors. The CZT-2 site is on a slight slope and is characterized by shallow soils (<90cm) with extensive cobbles and bedrock outcrops with limited access to deeper soil or saprolite water. The second site also sits in the open while the first site is more protected in a closed forest. The two sites show different responses to changes in rain and snow loading from above as well as soil drainage and water depletion from below. They also have different thresholds for transpiration shut down both due to late season water deficit and also during winter periods where air temperatures are high enough to permit photosynthesis. Sap flux data are supplemented by extensive soil water content and potential measurements around both trees as well as evapotranspiration measurements from a 50m flux tower located between the two instrumented trees.

Depth of the biologically active zone in upland habitats at the Hanford Site, Washington: Implications for remediation and ecological risk management.

PubMed

Sample, Bradley E; Lowe, John; Seeley, Paul; Markin, Melanie; McCarthy, Chris; Hansen, Jim; Aly, Alaa H

2015-01-01

Soil invertebrates, mammals, and plants penetrate and exploit the surface soil layer (i.e., the biologically active zone) to varying depths. As the US Department of Energy remediates radioactive and hazardous wastes in soil at the Hanford Site, a site-specific definition of the biologically active zone is needed to identify the depth to which remedial actions should be taken to protect the environment and avoid excessive cleanup expenditures. This definition may then be considered in developing a point of compliance for remediation in accordance with existing regulations. Under the State of Washington Model Toxic Control Act (MTCA), the standard point of compliance for soil cleanup levels with unrestricted land use is 457 cm (15 ft) below ground surface. When institutional controls are required to control excavations to protect people, MTCA allows a conditional point of compliance to protect biological resources based on the depth of the biologically active zone. This study was undertaken to identify and bound the biologically active zone based on ecological resources present at the Hanford Site. Primary data were identified describing the depths to which ants, mammals, and plants may exploit the surface soil column at the Hanford Site and other comparable locations. The maximum depth observed for harvester ants (Pogonomyrmex spp.) was 270 cm (8.9 ft), with only trivial excavation below 244 cm (8 ft). Badgers (Taxidea taxus) are the deepest burrowing mammal at the Hanford Site, with maximum burrow depths of 230 cm (7.6 ft); all other mammals did not burrow below 122 cm (4 ft). Shrubs are the deepest rooting plants with rooting depths to 300 cm (9.8 ft) for antelope bitterbrush (Purshia tridentata). The 2 most abundant shrub species did not have roots deeper than 250 cm (8.2 ft). The deepest rooted forb had a maximum root depth of 240 cm (7.9 ft). All other forbs and grasses had rooting depths of 200 cm (6.6 ft) or less. These data indicate that the biologically active soil zone in the Hanford Central Plateau does not exceed 300 cm (9.8 ft), the maximum rooting depth for the deepest rooting plant. The maximum depth at which most other plant and animal species occur is substantially shallower. Spatial distribution and density of burrows and roots over depths were also evaluated. Although maximum excavation by harvester ants is 270 cm (8.9 ft), trivial volume of soil is excavated below 150 cm (∼5 ft). Maximum rooting depths for all grasses, forbs, and the most abundant and deepest rooting shrubs are 300 cm (9.8 ft) or less. Most root biomass (>50-80%) is concentrated in the top 100 cm (3.3 ft), whereas at the maximum depth (9.8 ft), only trace root biomass is present. Available data suggest a limited likelihood for significant transport of contaminants to the surface by plants at or below 244 cm (8 ft), and suggest that virtually all plants or animal species occurring on the Central Plateau have a negligible likelihood for transporting soil contaminants to the surface from depths at or below 305 cm (10 ft). © 2014 SETAC.

Hurricane-induced failure of low salinity wetlands

PubMed Central

Howes, Nick C.; FitzGerald, Duncan M.; Hughes, Zoe J.; Georgiou, Ioannis Y.; Kulp, Mark A.; Miner, Michael D.; Smith, Jane M.; Barras, John A.

2010-01-01

During the 2005 hurricane season, the storm surge and wave field associated with Hurricanes Katrina and Rita eroded 527 km2 of wetlands within the Louisiana coastal plain. Low salinity wetlands were preferentially eroded, while higher salinity wetlands remained robust and largely unchanged. Here we highlight geotechnical differences between the soil profiles of high and low salinity regimes, which are controlled by vegetation and result in differential erosion. In low salinity wetlands, a weak zone (shear strength 500–1450 Pa) was observed ∼30 cm below the marsh surface, coinciding with the base of rooting. High salinity wetlands had no such zone (shear strengths > 4500 Pa) and contained deeper rooting. Storm waves during Hurricane Katrina produced shear stresses between 425–3600 Pa, sufficient to cause widespread erosion of the low salinity wetlands. Vegetation in low salinity marshes is subject to shallower rooting and is susceptible to erosion during large magnitude storms; these conditions may be exacerbated by low inorganic sediment content and high nutrient inputs. The dramatic difference in resiliency of fresh versus more saline marshes suggests that the introduction of freshwater to marshes as part of restoration efforts may therefore weaken existing wetlands rendering them vulnerable to hurricanes. PMID:20660777

Comparison of Rooting Strategies to Explore Rock Fractures for Shallow Soil-Adapted Tree Species with Contrasting Aboveground Growth Rates: A Greenhouse Microcosm Experiment

PubMed Central

Nie, Yunpeng; Chen, Hongsong; Ding, Yali; Yang, Jing; Wang, Kelin

2017-01-01

For tree species adapted to shallow soil environments, rooting strategies that efficiently explore rock fractures are important because soil water depletion occurs frequently. However, two questions: (a) to what extent shallow soil-adapted species rely on exploring rock fractures and (b) what outcomes result from drought stress, have rarely been tested. Therefore, based on the expectation that early development of roots into deep soil layers is at the cost of aboveground growth, seedlings of three tree species (Cyclobalanopsis glauca, Delavaya toxocarpa, and Acer cinnamomifolium) with distinct aboveground growth rates were selected from a typical shallow soil region. In a greenhouse experiment that mimics the basic features of shallow soil environments, 1-year-old seedlings were transplanted into simulated microcosms of shallow soil overlaying fractured bedrock. Root biomass allocation and leaf physiological activities, as well as leaf δ13C values were investigated and compared for two treatments: regular irrigation and repeated cycles of drought stress. Our results show that the three species differed in their rooting strategies in the context of encountering rock fractures, however, these strategies were not closely related to the aboveground growth rate. For the slowest-growing seedling, C. glauca, percentages of root mass in the fractures, as well as in the soil layer between soil and bedrock increased significantly under both treatments, indicating a specialized rooting strategy that facilitated the exploration of rock fractures. Early investment in deep root growth was likely critical to the establishment of this drought-vulnerable species. For the intermediate-growing, A. cinnamomifolium, percentages of root mass in the bedrock and interface soil layers were relatively low and exhibited no obvious change under either treatment. This limited need to explore rock fractures was compensated by a conservative water use strategy. For the fast-growing, D. toxocarpa, percentages of root mass in the bedrock and interface layers increased simultaneously under drought conditions, but not under irrigated conditions. This drought-induced rooting plasticity was associated with drought avoidance by this species. Although, root development might have been affected by the simulated microcosm, contrasting results among the three species indicated that efficient use of rock fractures is not a necessary or specialized strategy of shallow-soil adapted species. The establishment and persistence of these species relied on the mutual complementation between their species-specific rooting strategies and drought adaptations. PMID:29018464

Simplified continuous simulation model for investigating effects of controlled drainage on long-term soil moisture dynamics with a shallow groundwater table.

PubMed

Sun, Huaiwei; Tong, Juxiu; Luo, Wenbing; Wang, Xiugui; Yang, Jinzhong

2016-08-01

Accurate modeling of soil water content is required for a reasonable prediction of crop yield and of agrochemical leaching in the field. However, complex mathematical models faced the difficult-to-calibrate parameters and the distinct knowledge between the developers and users. In this study, a deterministic model is presented and is used to investigate the effects of controlled drainage on soil moisture dynamics in a shallow groundwater area. This simplified one-dimensional model is formulated to simulate soil moisture in the field on a daily basis and takes into account only the vertical hydrological processes. A linear assumption is proposed and is used to calculate the capillary rise from the groundwater. The pipe drainage volume is calculated by using a steady-state approximation method and the leakage rate is calculated as a function of soil moisture. The model is successfully calibrated by using field experiment data from four different pipe drainage treatments with several field observations. The model was validated by comparing the simulations with observed soil water content during the experimental seasons. The comparison results demonstrated the robustness and effectiveness of the model in the prediction of average soil moisture values. The input data required to run the model are widely available and can be measured easily in the field. It is observed that controlled drainage results in lower groundwater contribution to the root zone and lower depth of percolation to the groundwater, thus helping in the maintenance of a low level of soil salinity in the root zone.

Compensatory Root Water Uptake of Overlapping Root Systems

NASA Astrophysics Data System (ADS)

Agee, E.; Ivanov, V. Y.; He, L.; Bisht, G.; Shahbaz, P.; Fatichi, S.; Gough, C. M.; Couvreur, V.; Matheny, A. M.; Bohrer, G.

2015-12-01

Land-surface models use simplified representations of root water uptake based on biomass distributions and empirical functions that constrain water uptake during unfavorable soil moisture conditions. These models fail to capture the observed hydraulic plasticity that allows plants to regulate root hydraulic conductivity and zones of active uptake based on local gradients. Recent developments in root water uptake modeling have sought to increase its mechanistic representation by bridging the gap between physically based microscopic models and computationally feasible macroscopic approaches. It remains to be demonstrated whether bulk parameterization of microscale characteristics (e.g., root system morphology and root conductivity) can improve process representation at the ecosystem scale. We employ the Couvreur method of microscopic uptake to yield macroscopic representation in a coupled soil-root model. Using a modified version of the PFLOTRAN model, which represents the 3-D physics of variably saturated soil, we model a one-hectare temperate forest stand under natural and synthetic climatic forcing. Our results show that as shallow soil layers dry, uptake at the tree and stand level shift to deeper soil layers, allowing the transpiration stream demanded by the atmosphere. We assess the potential capacity of the model to capture compensatory root water uptake. Further, the hydraulic plasticity of the root system is demonstrated by the quick response of uptake to rainfall pulses. These initial results indicate a promising direction for land surface models in which significant three-dimensional information from large root systems can be feasibly integrated into the forest scale simulations of root water uptake.

Tritium plume dynamics in the shallow unsaturated zone in an arid environment

USGS Publications Warehouse

Maples, S.R.; Andraski, Brian J.; Stonestrom, David A.; Cooper, C.A.; Pohll, G.; Michel, R.L.

2014-01-01

The spatiotemporal variability of a tritium plume in the shallow unsaturated zone and the mechanisms controlling its transport were evaluated during a 10-yr study. Plume movement was minimal and its mass declined by 68%. Upward-directed diffusive-vapor tritium fluxes and radioactive decay accounted for most of the observed plume-mass declines.Effective isolation of tritium (3H) and other contaminants at waste-burial facilities requires improved understanding of transport processes and pathways. Previous studies documented an anomalously widespread (i.e., theoretically unexpected) distribution of 3H (>400 m from burial trenches) in a dry, sub-root-zone gravelly layer (1–2-m depth) adjacent to a low-level radioactive waste (LLRW) burial facility in the Amargosa Desert, Nevada, that closed in 1992. The objectives of this study were to: (i) characterize long-term, spatiotemporal variability of 3H plumes; and (ii) quantify the processes controlling 3H behavior in the sub-root-zone gravelly layer beneath native vegetation adjacent to the facility. Geostatistical methods, spatial moment analyses, and mass flux calculations were applied to a spatiotemporally comprehensive, 10-yr data set (2001–2011). Results showed minimal bulk-plume advancement during the study period and limited Fickian spreading of mass. Observed spreading rates were generally consistent with theoretical vapor-phase dispersion. The plume mass diminished more rapidly than would be expected from radioactive decay alone, indicating net efflux from the plume. Estimates of upward 3H efflux via diffusive-vapor movement were >10× greater than by dispersive-vapor or total-liquid movement. Total vertical fluxes were >20× greater than lateral diffusive-vapor fluxes, highlighting the importance of upward migration toward the land surface. Mass-balance calculations showed that radioactive decay and upward diffusive-vapor fluxes contributed the majority of plume loss. Results indicate that plume losses substantially exceeded any continuing 3H contribution to the plume from the LLRW facility during 2001 to 2011 and suggest that the widespread 3H distribution resulted from transport before 2001.

Root-zone temperatures affect phenology of bud break, flower cluster development, shoot extension growth and gas exchange of 'Braeburn' (Malus domestica) apple trees.

PubMed

Greer, Dennis H; Wünsche, Jens N; Norling, Cara L; Wiggins, Harry N

2006-01-01

We investigated the effects of root-zone temperature on bud break, flowering, shoot growth and gas exchange of potted mature apple (Malus domestica (Borkh.)) trees with undisturbed roots. Soil respiration was also determined. Potted 'Braeburn' apple trees on M.9 rootstock were grown for 70 days in a constant day/night temperature regime (25/18 degrees C) and one of three constant root-zone temperatures (7, 15 and 25 degrees C). Both the proportion and timing of bud break were significantly enhanced as root-zone temperature increased. Rate of floral cluster opening was also markedly increased with increasing root-zone temperature. Shoot length increased but shoot girth growth declined as root-zone temperatures increased. Soil respiration and leaf photosynthesis generally increased as root-zone temperatures increased. Results indicate that apple trees growing in regions where root zone temperatures are < or = 15 degrees C have delayed bud break and up to 20% fewer clusters than apple trees exposed to root zone temperatures of > or = 15 degrees C. The effect of root-zone temperature on shoot performance may be mediated through the mobilization of root reserves, although the role of phytohormones cannot be discounted. Variation in leaf photosynthesis across the temperature treatments was inadequately explained by stomatal conductance. Given that root growth increases with increasing temperature, changes in sink activity induced by the root-zone temperature treatments provide a possible explanation for the non-stomatal effect on photosynthesis. Irrespective of underlying mechanisms, root-zone temperatures influence bud break and flowering in apple trees.

76 FR 55276 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Vessels...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-09-07

.... 101126522-0640-02] RIN 0648-XA680 Fisheries of the Economic Exclusive Zone Off Alaska; Shallow- Water...; closure. SUMMARY: NMFS is prohibiting directed fishing for species that comprise the shallow-water species... fourth seasonal apportionment of the Pacific halibut bycatch allowance specified for the shallow-water...

77 FR 54837 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Vessels...

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2012-09-06

.... 111207737-2141-02] RIN 0648-XC204 Fisheries of the Economic Exclusive Zone Off Alaska; Shallow- Water...; closure. SUMMARY: NMFS is prohibiting directed fishing for species that comprise the shallow-water species... fourth seasonal apportionment of the Pacific halibut bycatch allowance specified for the shallow-water...

77 FR 33103 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Vessels...

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2012-06-05

.... 111207737-2141-02] RIN 0648-XC056 Fisheries of the Economic Exclusive Zone Off Alaska; Shallow- Water...; closure. SUMMARY: NMFS is prohibiting directed fishing for species that comprise the shallow-water species... second seasonal apportionment of the Pacific halibut bycatch allowance specified for the shallow-water...

77 FR 19146 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Vessels...

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2012-03-30

.... 111207737-2141-02] RIN 0648-XB122 Fisheries of the Economic Exclusive Zone Off Alaska; Shallow- Water...; closure. SUMMARY: NMFS is prohibiting directed fishing for species that comprise the shallow-water species... first seasonal apportionment of the Pacific halibut bycatch allowance specified for the shallow-water...

77 FR 12213 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species by Amendment 80...

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2012-02-29

.... 101126522-0640-02] RIN 0648-XB044 Fisheries of the Economic Exclusive Zone Off Alaska; Shallow- Water...: NMFS is prohibiting directed fishing for species that comprise the shallow-water species fishery by... shallow-water species fishery by Amendment 80 vessels in the GOA has been reached. DATES: Effective 1200...

75 FR 54290 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Vessels...

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2010-09-07

.... 0910131362-0087-02] RIN 0648-XY78 Fisheries of the Economic Exclusive Zone Off Alaska; Shallow- Water Species...: NMFS is prohibiting directed fishing for species that comprise the shallow-water species fishery by... apportionment of the Pacific halibut bycatch allowance specified for the shallow-water species fishery in the...

76 FR 39794 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Catcher...

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2011-07-07

.... 101126522-0640-02] RIN 0648-XA539 Fisheries of the Economic Exclusive Zone Off Alaska; Shallow- Water...; closure. SUMMARY: NMFS is prohibiting directed fishing for species that comprise the shallow-water species... species catch (PSC) sideboard limit specified for the shallow-water species fishery for catcher/processors...

75 FR 38938 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Catcher...

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2010-07-07

.... 0910131362-0087-02] RIN 0648-XX31 Fisheries of the Economic Exclusive Zone Off Alaska; Shallow- Water Species...: NMFS is prohibiting directed fishing for species that comprise the shallow-water species fishery for... (PSC) sideboard limit specified for the shallow-water species fishery for catcher/processors subject to...

77 FR 42193 - Fisheries of the Economic Exclusive Zone Off Alaska; Shallow-Water Species Fishery by Vessels...

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2012-07-18

.... 111207737-2141-02] RIN 0648-0648-XC112 Fisheries of the Economic Exclusive Zone Off Alaska; Shallow- Water...; closure. SUMMARY: NMFS is prohibiting directed fishing for species that comprise the shallow-water species... third seasonal apportionment of the Pacific halibut bycatch allowance specified for the shallow-water...

76 FR 57679 - Fisheries of the Exclusive Economic Zone Off Alaska; Shallow-Water Species by Vessels Using Trawl...

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2011-09-16

.... 101126522-0640-02] RIN 0648-XA704 Fisheries of the Exclusive Economic Zone Off Alaska; Shallow- Water... closure. SUMMARY: NMFS is opening directed fishing for shallow-water species by vessels using trawl gear... apportionment of the 2011 Pacific halibut bycatch allowance specified for the trawl shallow-water species...

75 FR 56017 - Fisheries of the Exclusive Economic Zone Off Alaska; Shallow-Water Species by Vessels Using Trawl...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-09-15

.... 0910131362-0087-02] RIN 0648-XZ06 Fisheries of the Exclusive Economic Zone Off Alaska; Shallow- Water Species... closure. SUMMARY: NMFS is opening directed fishing for shallow-water species by vessels using trawl gear... of the 2010 Pacific halibut bycatch allowance specified for the trawl shallow-water species fishery...

Field tracer investigation of unsaturated zone flow paths and mechanisms in agricultural soils of northwestern Mississippi, USA

USGS Publications Warehouse

Perkins, K.S.; Nimmo, J.R.; Rose, C.E.; Coupe, R.H.

2011-01-01

In many farmed areas, intensive application of agricultural chemicals and withdrawal of groundwater for irrigation have led to water quality and supply issues. Unsaturated-zone processes, including preferential flow, play a major role in these effects but are not well understood. In the Bogue Phalia basin, an intensely agricultural area in the Delta region of northwestern Mississippi, the fine-textured soils often exhibit surface ponding and runoff after irrigation and rainfall as well as extensive surface cracking during prolonged dry periods. Fields are typically land-formed to promote surface flow into drainage ditches and streams that feed into larger river ecosystems. Downward flow of water below the root zone is considered minimal; regional groundwater models predict only 5% or less of precipitation recharges the heavily used alluvial aquifer. In this study transport mechanisms within and below the root zone of a fallow soybean field were assessed by performing a 2-m ring infiltration test with tracers and subsurface monitoring instruments. Seven months after tracer application, 48 continuous cores were collected for tracer extraction to define the extent of water movement and quantify preferential flow using a mass-balance approach. Vertical water movement was rapid below the pond indicating the importance of vertical preferential flow paths in the shallow unsaturated zone, especially to depths where agricultural disturbance occurs. Lateral flow of water at shallow depths was extensive and spatially non-uniform, reaching up to 10. m from the pond within 2. months. Within 1. month, the wetting front reached a textural boundary at 4-5. m between the fine-textured soil and sandy alluvium, now a potential capillary barrier which, prior to extensive irrigation withdrawals, was below the water table. Within 10. weeks, tracer was detectable at the water table which is presently about 12. m below land surface. Results indicate that 43% of percolation may be through preferential flow paths and that any water breaking through the capillary barrier (as potential recharge) likely does so in fingers which are difficult to detect with coring methods. In other areas where water levels have declined and soils have similar properties, the potential for transport of agricultural chemicals to the aquifer may be greater than previously assumed. ?? 2010 .

Water flux through a semi-deciduous forest grove of the Orinoco savannas.

PubMed

San José, José J; Montes, Ruben A; Florentino, Adriana

1995-02-01

Water relations were analysed in a semi-deciduous forest grove occurring in the oxisols of the Orinoco savannas. This grove has a shallow unconsolidated ironstone cuirass, which is overlaid by a sandy loam layer (0.0-0.5 m) that contains more than 90% of the grove forest root phytomass. Evapotranspiration and through drainage were calculated by using data from the soil profile as related to physical characteristics of the site root zone, hydraulic conductivity, volumetric water content and potential hydraulic gradient. Mean annual evapotranspiration was 783 mm year -1 and annual through drainage below the root zone was 14% (162 mm year -1 ) of the gross rainfall. This drainage recharged the 42% of the annual saturation deficit of the water table. Similar mean annual evapotranspiration (770 mm year -1 ) was also calculated by using the water balance components. The mean daily coupling omega factor (Ω) between the grove canopy and the surrounding atmosphere indicated that a high degree of coupling (Ω=0.14±0.16) occurs in the grove and evapotranspiration was mainly controlled by surface conductance. As the dry season proceeded, the soil saturation deficit (δθ) increased rapidly resulting in a threshold surface conductance (0.030-0.005 m s -1 ) for δθ ranging from 0.05 to 0.10. Hypotheses to explain the omnipresence of perennial species in the wide range of physical conditions in neotropical savannas are discussed.

Desirable plant root traits for protecting unstable slopes against landslides

NASA Astrophysics Data System (ADS)

Stokes, A.; Atger, C.; Bengough, G.; Fourcaud, T.; Sidle, R. C.

2009-04-01

A trait is defined as a distinct, quantitative property of organisms, usually measured at the individual level and used comparatively across species. Plant quantitative traits are extremely important for understanding the local ecology of any site. Plant height, architecture, root depth, wood density, leaf size and leaf nitrogen concentration control ecosystem processes and define habitat for other taxa. An engineer conjecturing as to how plant traits may directly influence physical processes occurring on sloping land just needs to consider how e.g. canopy architecture and litter properties influence the partitioning of rainfall among interception loss, infiltration and runoff. Plant traits not only influence abiotic processes occurring at a site, but also the habitat for animals and invertebrates. Depending on the goal of the landslide engineer, the immediate and long-term effects of plant traits in an environment must be considered if a site is to remain viable and ecologically successful. When vegetation is considered in models of slope stability, usually the only root parameters taken into consideration are tensile strength and root area ratio. Root system spatial structure is not considered, although the length, orientation and diameter of roots are recognized as being of importance. Thick roots act like soil nails on slopes, reinforcing soil in the same way that concrete is reinforced with steel rods. The spatial position of these thick roots also has an indirect effect on soil fixation in that the location of thin and fine roots will depend on the arrangement of thick roots. Thin and fine roots act in tension during failure on slopes and if they cross the slip surface, are largely responsible for reinforcing soil on slopes. Therefore, the most important trait to consider initially is rooting depth. To stabilize a slope against a shallow landslide, roots must cross the shear surface. The number and thickness of roots in this zone will therefore largely determine slope stability. Rooting depth is species dependent when soil conditions are not limiting and the number of horizontal lateral roots borne on the vertical roots usually changes with depth. Therefore, the number and orientation of roots that the shear surface intersects will change significantly with rooting depth for the same plant, even for magnitudes of only several cm. Similarly, depending on the geometry of the root system, the angle at which a root crosses the shear surface can also have an influence on its resistance to pullout and breakage. The angle at which a root emerges from the parent root is dependent on root type, depth and species (when soil conditions are not limiting). Due to the physiology of roots, a root branch can be initiated at any point along a parent root, but not necessarily emerge fully from the parent root. These traits, along with others including size, relative growth rate, regeneration strategies, wood structure and strength will be discussed with regard to their influence on slope stability. How each of these traits is influenced by soil conditions and plantation techniques is also of extreme importance to the landslide engineer. The presence of obstacles in the soil, as well as compaction, affects root length and branching pattern. Roots of many species of woody plants on shallow soils also tend to grow along fractures deep into the underlying bedrock which allows roots to locate supplies of nutrient and water rich pockets. Rooting depths of herbaceous species in water-limited environments are highly correlated with infiltration depth, but waterlogged soils can asphyxiate tree roots, resulting in shallow root systems. The need to understand and integrate each of these traits for a species is not easy. Therefore, we suggest a hierarchy whereby traits are considered in order of importance, along with how external factors influence their expression over time.

76 FR 59064 - Fisheries of the Exclusive Economic Zone Off Alaska; Shallow-Water Species by Vessels Using Trawl...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-09-23

.... 101126522-0640-02] RIN 0648-XA722 Fisheries of the Exclusive Economic Zone Off Alaska; Shallow- Water... closure. SUMMARY: NMFS is opening directed fishing for shallow-water species by [[Page 59065

Assessing the temporal stability of spatial patterns of soil apparent electrical conductivity using geophysical methods

NASA Astrophysics Data System (ADS)

De Caires, Sunshine A.; Wuddivira, Mark N.; Bekele, Isaac

2014-10-01

Cocoa remains in the same field for decades, resulting in plantations dominated with aging trees growing on variable and depleted soils. We determined the spatio-temporal variability of key soil properties in a (5.81 ha) field from the International Cocoa Genebank, Trinidad using geophysical methods. Multi-year (2008-2009) measurements of apparent electrical conductivity at 0-0.75 m (shallow) and 0.75-1.5 m (deep) were conducted. Apparent electrical conductivity at deep and shallow gave the strongest linear correlation with clay-silt content (R = 0.67 and R = 0.78, respectively) and soil solution electrical conductivity (R = 0.76 and R = 0.60, respectively). Spearman rank correlation coefficients ranged between 0.89-0.97 and 0.81- 0.95 for apparent electrical conductivity at deep and shallow, respectively, signifying a strong linear dependence between measurement days. Thus, in the humid tropics, cocoa fields with thick organic litter layer and relatively dense understory cover, experience minimal fluctuations in transient properties of soil water and temperature at the topsoil resulting in similarly stable apparent electrical conductivity at shallow and deep. Therefore, apparent electrical conductivity at shallow, which covers the depth where cocoa feeder roots concentrate, can be used as a fertility indicator and to develop soil zones for efficient application of inputs and management of cocoa fields.

[Responses of Cynodon dactylon population in hydro-fluctuation belt of Three Gorges Reservoir area to flooding-drying habitat change].

PubMed

Hong, Ming; Guo, Quan-Shu; Nie, Bi-Hong; Kang, Yi; Pei, Shun-Xiang; Jin, Jiang-Qun; Wang, Xiang-Fu

2011-11-01

This paper studied the population density, morphological characteristics, and biomass and its allocation of Cynodon dactylon at different altitudinal sections of the hydro-fluctuation belt in Three Gorges Reservoir area, based on located observations. At the three altitudinal sections, the population density of C. dactylon was in the order of shallow water section (165-170 m elevation) > non-flooded section (above 172 m elevation) > deep water section (145-150 m elevation), the root diameter and root length were in the order of deep water section > shallow water section > non-flooded section, the total biomass, root biomass, stem biomass, leaf biomass, and stem biomass allocation ratio were in the order of the shallow water section > non-flooded section > deep water section, and the root biomass allocation ratio, leaf biomass allocation ratio, and underground biomass/aboveground biomass were in the order of deep water section > shallow water section > non-flooded section. The unique adaption strategies of C. dactylon to the flooding-drying habitat change in the shallow water section were the accelerated elongation growth and the increased stem biomass allocation, those in the deep water section were the increased node number of primary and secondary branches, increased number of the branches, and increased leaf biomass allocation, whereas the common strategies in the shallow and deep water sections were the accelerated root growth and the increased tillering and underground biomass allocation for preparing nutrition and energy for the rapid growth in terrestrial environment.

Modelling Water Uptake Provides a New Perspective on Grass and Tree Coexistence

PubMed Central

2015-01-01

Root biomass distributions have long been used to infer patterns of resource uptake. These patterns are used to understand plant growth, plant coexistence and water budgets. Root biomass, however, may be a poor indicator of resource uptake because large roots typically do not absorb water, fine roots do not absorb water from dry soils and roots of different species can be difficult to differentiate. In a sub-tropical savanna, Kruger Park, South Africa, we used a hydrologic tracer experiment to describe the abundance of active grass and tree roots across the soil profile. We then used this tracer data to parameterize a water movement model (Hydrus 1D). The model accounted for water availability and estimated grass and tree water uptake by depth over a growing season. Most root biomass was found in shallow soils (0–20 cm) and tracer data revealed that, within these shallow depths, half of active grass roots were in the top 12 cm while half of active tree roots were in the top 21 cm. However, because shallow soils provided roots with less water than deep soils (20–90 cm), the water movement model indicated that grass and tree water uptake was twice as deep as would be predicted from root biomass or tracer data alone: half of grass and tree water uptake occurred in the top 23 and 43 cm, respectively. Niche partitioning was also greater when estimated from water uptake rather than tracer uptake. Contrary to long-standing assumptions, shallow grass root distributions absorbed 32% less water than slightly deeper tree root distributions when grasses and trees were assumed to have equal water demands. Quantifying water uptake revealed deeper soil water uptake, greater niche partitioning and greater benefits of deep roots than would be estimated from root biomass or tracer uptake data alone. PMID:26633177

Plant traits and trait-based vegetation modeling in the Arctic

NASA Astrophysics Data System (ADS)

Xu, C.; Sevanto, S.; Iversen, C. M.; Salmon, V. G.; Rogers, A.; Wullschleger, S.; Wilson, C. J.

2017-12-01

Arctic tundra environments are characterized by extremely cold temperatures, strong winds, short growing season and thin, nutrient-poor soil layer impacted by permafrost. To survive in this environment vascular plants have developed traits that simultaneously promote high productivity under favorable environments, and survival in harsh conditions. To improve representation of Arctic tundra vegetation in Earth System Models we surveyed plant trait data bases for key trait parameters that influence modeled ecosystem carbon balance, and compared the traits within plant families occurring in the boreal, temperate and arctic zones. The parameters include photosynthetic carbon uptake efficiency (Vcmax and Jmax), root:shoot ratio, and root and leaf nitrogen content, and we focused on woody shrubs. Our results suggest that root nitrogen content in non-nitrogen fixing tundra shrubs is lower than in representatives of the same families in the boreal or temperate zone. High tissue nitrogen concentrations have been related to high vulnerability to drought. The low root nitrogen concentrations in tundra shrubs may thus be an indication of acclimation to shallow soils, and frequent freezing that has a similar impact on the plant conductive tissue as drought. With current nitrogen availability, nitrogen limitation reduces the benefits of increased temperatures and longer growing seasons to the tundra ecosystem carbon balance. Thawing of permafrost will increase nitrogen availability, and promote plant growth and carbon uptake, but it could also make the shrubs more vulnerable to freeze-thaw cycles, with the overall result of reduced shrub coverage. The final outcome of warming temperatures and thawing of permafrost on tundra shrubs will thus depend on the relative speed of warming and plant acclimation.

Life cycle stage and water depth affect flooding-induced adventitious root formation in the terrestrial species Solanum dulcamara

PubMed Central

Zhang, Qian; Visser, Eric J. W.; de Kroon, Hans; Huber, Heidrun

2015-01-01

Background and Aims Flooding can occur at any stage of the life cycle of a plant, but often adaptive responses of plants are only studied at a single developmental stage. It may be anticipated that juvenile plants may respond differently from mature plants, as the amount of stored resources may differ and morphological changes can be constrained. Moreover, different water depths may require different strategies to cope with the flooding stress, the expression of which may also depend on developmental stage. This study investigated whether flooding-induced adventitious root formation and plant growth were affected by flooding depth in Solanum dulcamara plants at different developmental stages. Methods Juvenile plants without pre-formed adventitious root primordia and mature plants with primordia were subjected to shallow flooding or deep flooding for 5 weeks. Plant growth and the timing of adventitious root formation were monitored during the flooding treatments. Key Results Adventitious root formation in response to shallow flooding was significantly constrained in juvenile S. dulcamara plants compared with mature plants, and was delayed by deep flooding compared with shallow flooding. Complete submergence suppressed adventitious root formation until up to 2 weeks after shoots restored contact with the atmosphere. Independent of developmental stage, a strong positive correlation was found between adventitious root formation and total biomass accumulation during shallow flooding. Conclusions The potential to deploy an escape strategy (i.e. adventitious root formation) may change throughout a plant’s life cycle, and is largely dependent on flooding depth. Adaptive responses at a given stage of the life cycle thus do not necessarily predict how the plant responds to flooding in another growth stage. As variation in adventitious root formation also correlates with finally attained biomass, this variation may form the basis for variation in resistance to shallow flooding among plants. PMID:26105188

Life cycle stage and water depth affect flooding-induced adventitious root formation in the terrestrial species Solanum dulcamara.

PubMed

Zhang, Qian; Visser, Eric J W; de Kroon, Hans; Huber, Heidrun

2015-08-01

Flooding can occur at any stage of the life cycle of a plant, but often adaptive responses of plants are only studied at a single developmental stage. It may be anticipated that juvenile plants may respond differently from mature plants, as the amount of stored resources may differ and morphological changes can be constrained. Moreover, different water depths may require different strategies to cope with the flooding stress, the expression of which may also depend on developmental stage. This study investigated whether flooding-induced adventitious root formation and plant growth were affected by flooding depth in Solanum dulcamara plants at different developmental stages. Juvenile plants without pre-formed adventitious root primordia and mature plants with primordia were subjected to shallow flooding or deep flooding for 5 weeks. Plant growth and the timing of adventitious root formation were monitored during the flooding treatments. Adventitious root formation in response to shallow flooding was significantly constrained in juvenile S. dulcamara plants compared with mature plants, and was delayed by deep flooding compared with shallow flooding. Complete submergence suppressed adventitious root formation until up to 2 weeks after shoots restored contact with the atmosphere. Independent of developmental stage, a strong positive correlation was found between adventitious root formation and total biomass accumulation during shallow flooding. The potential to deploy an escape strategy (i.e. adventitious root formation) may change throughout a plant's life cycle, and is largely dependent on flooding depth. Adaptive responses at a given stage of the life cycle thus do not necessarily predict how the plant responds to flooding in another growth stage. As variation in adventitious root formation also correlates with finally attained biomass, this variation may form the basis for variation in resistance to shallow flooding among plants. © The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Identifying Developmental Zones in Maize Lateral Root Cell Length Profiles using Multiple Change-Point Models

PubMed Central

Moreno-Ortega, Beatriz; Fort, Guillaume; Muller, Bertrand; Guédon, Yann

2017-01-01

The identification of the limits between the cell division, elongation and mature zones in the root apex is still a matter of controversy when methods based on cellular features, molecular markers or kinematics are compared while methods based on cell length profiles have been comparatively underexplored. Segmentation models were developed to identify developmental zones within a root apex on the basis of epidermal cell length profiles. Heteroscedastic piecewise linear models were estimated for maize lateral roots of various lengths of both wild type and two mutants affected in auxin signaling (rtcs and rum-1). The outputs of these individual root analyses combined with morphological features (first root hair position and root diameter) were then globally analyzed using principal component analysis. Three zones corresponding to the division zone, the elongation zone and the mature zone were identified in most lateral roots while division zone and sometimes elongation zone were missing in arrested roots. Our results are consistent with an auxin-dependent coordination between cell flux, cell elongation and cell differentiation. The proposed segmentation models could extend our knowledge of developmental regulations in longitudinally organized plant organs such as roots, monocot leaves or internodes. PMID:29123533

Root productivity of deciduous and evergreen species identified using a molecular approach

NASA Astrophysics Data System (ADS)

Ellsworth, P.; Sternberg, L. O.

2012-12-01

The linkage between leaf traits and root structure may explain how plants integrate above and belowground traits into whole plant adaptations to environmental stresses. In dry seasonal forests, the lack of dry season precipitation dries out the relatively nutrient-rich shallow soil, leaving shallow soil water and nutrients inaccessible to uptake until the wet season. In tropical or subtropical seasonal dry forests, deciduousness may allow for the survival of shallow fine roots during the dry season. Losing leaves during the dry season reduces aboveground plant water demand, and a greater proportion of water extracted from deep soil can be used to maintain shallow roots until the wet season. Higher shallow root survival through the dry season than evergreen species means that deciduous species can take advantage of the nutrient pulse associated with the onset of the wet season. To test the above hypothesis, fine roots were collected from soil cores in a seasonally dry forest during the dry season, onset of the wet season, and the wet season and were identified to selected evergreen and deciduous study species. The fine roots of two of the selected species (Lyonia ferruginea and Carya floridana) could be identified from visual characteristics. The other three study species, which were all from the genus Quercus (Q. geminata, Q. myrtifolia, and Q. laevis), were impossible to separate visually. We developed a PCR-based restriction fragment length polymorphism (PCR-RFLP) technique, which provided a quick, simple, low-cost way to identify the species of all fine roots of our study species. We extracted DNA from all roots that were not visually identified, amplified the internal transcribed spacer region (ITS), digested the ITS region with the restriction enzyme TaqαI, and used gel electrophoresis to separate DNA fragments. Using a PCR-RFLP based root identification key that we developed for the species at Archbold Biological Station, all species that could not be identified visually were separated based on each species ' unique banding pattern of restriction fragments. Approximately 2,500 roots were identified using PCR-RFLP and approximately 1,500 more roots were identified visually. Identifying fine roots to species allows for species-level analysis of root productivity in this in situ study.

Minimalistic models of the vertical distribution of roots under stochastic hydrological forcing

NASA Astrophysics Data System (ADS)

Laio, Francesco

2014-05-01

The assessment of the vertical root profile can be useful for multiple purposes: the partition of water fluxes between evaporation and transpiration, the evaluation of root soil reinforcement for bioengineering applications, the influence of roots on biogeochemical and microbial processes in the soil, etc. In water-controlled ecosystems the shape of the root profile is mainly determined by the soil moisture availability at different depths. The long term soil water balance in the root zone can be assessed by modeling the stochastic incoming and outgoing water fluxes, influenced by the stochastic rainfall pulses and/or by the water table fluctuations. Through an ecohydrological analysis one obtains that in water-controlled ecosystems the vertical root distribution is a decreasing function with depth, whose parameters depend on pedologic and climatic factors. The model can be extended to suitably account for the influence of the water table fluctuations, when the water table is shallow enough to exert an influence on root development, in which case the vertical root distribution tends to assume a non-monotonic form. In order to evaluate the validity of the ecohydrological estimation of the root profile we have tested it on a case study in the north of Tuscany (Italy). We have analyzed data from 17 landslide-prone sites: in each of these sites we have assessed the pedologic and climatic descriptors necessary to apply the model, and we have measured the mean rooting depth. The results show a quite good matching between observed and modeled mean root depths. The merit of this minimalistic approach to the modeling of the vertical root distribution relies on the fact that it allows a quantitative estimation of the main features of the vertical root distribution without resorting to time- and money-demanding measuring surveys.

The groundwater subsidy to vegetation: groundwater exchanges between landcover patches

NASA Astrophysics Data System (ADS)

Steven, L. I.; Gimenez, R.; Jobbagy, E. G.

2015-12-01

The Gran Chaco is a hot, dry plain, that spans over 60 million hectares across Bolivia, Paraguay, Brazil and Argentina. It supports high biodiversity in its dry forest and savannahs, but is rapidly being converted to agriculture in response to growing soy demand and technology including genetic modification and zero-till, that has made cultivation in drier landscapes more viable. Under natural conditions, the deep-rooted, native vegetation of the Chaco effectively captured all rainfall for evapotranspiration resulting in near zero groundwater recharge under the dry forest. Conversion to shallower rooted soy and corn, combined with the fallow period prior to the growing season, reduces evapotranspiration and allows some water to percolate through the root zone and recharge the groundwater system. When this groundwater recharge occurs, it creates groundwater mounding and a hydraulic gradient that drives flow to adjacent landcover patches where recharge does not occur. As the watertable rises, groundwater becomes available to the deep-rooted, dry forest vegetation. We develop a soil and groundwater flow model to simulate infiltration, percolation, evaporation, rootwater uptake, groundwater recharge and the lateral transfer of water between adjacent landcover patches to quantify this groundwater subsidy from converted agricultural lands to remnant patches of dry forest.

Amino acid production exceeds plant nitrogen demand in Siberian tundra

NASA Astrophysics Data System (ADS)

Wild, Birgit; Eloy Alves, Ricardo J.; Bárta, Jiři; Čapek, Petr; Gentsch, Norman; Guggenberger, Georg; Hugelius, Gustaf; Knoltsch, Anna; Kuhry, Peter; Lashchinskiy, Nikolay; Mikutta, Robert; Palmtag, Juri; Prommer, Judith; Schnecker, Jörg; Shibistova, Olga; Takriti, Mounir; Urich, Tim; Richter, Andreas

2018-03-01

Arctic plant productivity is often limited by low soil N availability. This has been attributed to slow breakdown of N-containing polymers in litter and soil organic matter (SOM) into smaller, available units, and to shallow plant rooting constrained by permafrost and high soil moisture. Using 15N pool dilution assays, we here quantified gross amino acid and ammonium production rates in 97 active layer samples from four sites across the Siberian Arctic. We found that amino acid production in organic layers alone exceeded literature-based estimates of maximum plant N uptake 17-fold and therefore reject the hypothesis that arctic plant N limitation results from slow SOM breakdown. High microbial N use efficiency in organic layers rather suggests strong competition of microorganisms and plants in the dominant rooting zone. Deeper horizons showed lower amino acid production rates per volume, but also lower microbial N use efficiency. Permafrost thaw together with soil drainage might facilitate deeper plant rooting and uptake of previously inaccessible subsoil N, and thereby promote plant productivity in arctic ecosystems. We conclude that changes in microbial decomposer activity, microbial N utilization and plant root density with soil depth interactively control N availability for plants in the Arctic.

Volcanology of Tuzo pipe (Gahcho Kué cluster) — Root-diatreme processes re-interpreted

NASA Astrophysics Data System (ADS)

Seghedi, I.; Maicher, D.; Kurszlaukis, S.

2009-11-01

The Middle Cambrian (~ 540 Ma) Gahcho Kué Kimberlite Field is situated about 275 km ENE of Yellowknife, NWT, Canada. The kimberlites were emplaced into 2.6 Ga Archean granitic rocks of the Yellowknife Supergroup. Four larger kimberlite bodies (5034, Tesla, Tuzo, and Hearne) as well as a number of smaller pipes and associated sheets occur in the field. In plan view, the Tuzo pipe has a circular outline at the surface, and it widens towards deeper levels. The pipe infill consists of several types of coherent and fragmental kimberlite facies. Coherent or apparent coherent (possibly welded) kimberlite facies dominate at depth, but also occur at shallow levels, as dikes intruded late in the eruptive sequence or individual coherent kimberlite clasts. The central and shallower portions of the pipe consist of several fragmental kimberlite varieties that are texturally classified as Tuffisitic Kimberlites. The definition, geometry and extent of the geological units are complex and zones controlled by vertical elements are most significant. The fluidal outlines of some of the coherent kimberlite clasts suggest that at least some are the product of disruption of magma that was in a semi-plastic state or even of welded material. Ragged clasts at low levels are inferred to form part of a complex peperite-like system that intrudes the base of the root zone. A variable, often high abundance of local wall-rock xenoliths between and within the kimberlite phases is observed, varying in size from sub-millimeter to several tens of meters. Wall-rock fragments are common at all locations within the pipe but are especially frequent in a domain with a belt-like geometry between 120 and 200 m depth in the pipe. Steeply outward-dipping bedded deposits made up of wall-rock fragments occur in deep levels of the pipe and are especially common under the downward-widening roof segments. The gradational contact relationships of these deposits with the surrounding kimberlite-bearing rocks as well as their location suggest that they formed more-or-less in situ. Different breccia facies inside the pipe suggest an origin by slumping, grain flows, rock fall or pyroclastic deposition. The shape and facies architecture of the Tuzo pipe suggests that the studied section of the pipe lies at a root zone-diatreme transitional structural level. Composite coherent kimberlite clasts imply that recycling processes were active over time, while reworked wall-rock rich deposits and ductily-deformed clasts of welded kimberlite point to the presence of temporary cavities in the root zone. The emplacement of the Tuzo pipe did not occur in a single, violent explosion, but involved repetitive volcanic explosions alternating with periods of relative quiescence. The observed features are typical of phreatomagmatic processes, which may include phases of less-explosive magmatic activity.

The microstructure and fracture behavior of the dissimilar alloy 690-SUS 304L joint with various Nb addition

NASA Astrophysics Data System (ADS)

Lee, H. T.; Jeng, S. L.; Kuo, T. Y.

2003-05-01

This study investigates the microstructure and fracture behavior of dissimilar weldments of alloy 690 and SUS 304L for various additions of niobium (0.1, 1.03, 2.49, and 3.35 wt pct) in the flux. With identical parameters and procedures, weldments were butt welded by the shielding metal arc welding (SMAW) process using three layers, with each layer being deposited in a single pass. The results indicate that the microstructure of the fusion zone was primarily dendritic and that the contents of Ni, Cr, and Fe within this zone remain relatively constant and resemble alloy 690. With Nb addition, it is noted that the microstructure changes from a cellular to columnar dendrite and equiaxed dendrite. Meanwhile, the dendrite arm spacing reduces and the secondary arms grow longer. Moreover, the composition of the interdendritic phase, whose precipitate volume percentage increases from 5 to 25 pct, changes from Al-Ti-O to Nb rich. The spread of the interdendritic phase is less in the root bead than in the cap bead due to the greater influence of base metal dilution in this region. Mechanical tests indicate that Nb addition increases the average hardness of the weldment and reduces its elongation prior to rupture. However, the tensile strength is essentially unchanged by Nb addition. It is found that the average hardness of the root bead is generally lower than the cap bead, and that the tensile specimens all rupture in the fusion zone, with the fracture surfaces exhibiting ductile features. It is noted that the cap bead tends to rupture interdendritically with increasing Nb addition. Finally, fractography shows that the dimples in the root become larger and shallower with Nb addition and are rich with an interdendritic phase.

Topographic and ecological controls on root reinforcement

Treesearch

T.C. Hales; C.R. Ford; T. Hwang; J.M. Vose; L.E. Band

2009-01-01

Shallow landslides are a significant hazard in steep, soil-mantled landscapes. During intense rainfall events, the distribution of shallow landslides is controlled by variations in landscape gradient, the frictional and cohesive properties of soil and roots, and the subsurface hydrologic response. While gradients can be estimated from digital elevation models,...

Topographic and ecologic controls on root reinforcement

Treesearch

T.C. Hales; C.R. Ford; T. Hwang; J.M. Vose; L.E. Band

2009-01-01

Shallow landslides are a significant hazard in steep, soil-mantled landscapes. During intense rainfall events, the distribution of shallow landslides is controlled by variations in landscape gradient, the frictional and cohesive properties of soil and roots, and the subsurface hydrologic response. While gradients can be estimated from digital elevation models,...

Effects of grapevine root density and reinforcement on slopes prone to shallow slope instability

NASA Astrophysics Data System (ADS)

Meisina, Claudia; Bordoni, Massimiliano; Bischetti, Gianbattista; Vercesi, Alberto; Chiaradia, Enrico; Cislaghi, Alessio; Valentino, Roberto; Bittelli, Marco; Vergani, Chiara; Chersich, Silvia; Giuseppina Persichillo, Maria; Comolli, Roberto

2016-04-01

Slope erosion and shallow slope instabilities are the major factors of soil losses in cultivated steep terrains. These phenomena also cause loss of organic matter and plants nutrients, together with the partial or total destruction of the structures, such as the row tillage pattern of the vineyards, which allow for the plants cultivation. Vegetation has long been used as an effective tool to decrease the susceptibility of a slope to erosion and to shallow landslides. In particular, the scientific research focused on the role played by the plant roots, because the belowground biomass has the major control on the potential development of soil erosion and of shallow failures. Instead, a comprehensive study that analyzes the effects of the roots of agricultural plants on both soil erosion and slope instability has not been carried out yet. This aspect should be fundamental where sloped terrains are cultivated with plants of great economical relevance, as grapevine. To contribute to fill this gap, in this study the features of root density in the soil profile have been analyzed in slopes cultivated with vineyards, located on a sample hilly area of Oltrepò Pavese (northern Italy). In this area, the viticulture is the most important branch of the local economy. Moreover, several events of rainfall-induced slope erosion and shallow landslides have occurred in this area in the last 6 years, causing several economical damages linked to the destruction of the vineyards and the loss of high productivity soils. Grapevine root distribution have been measured in different test-site slopes, representative of the main geological, geomorphological, pedological, landslides distribution, agricultural features, in order to identify particular patterns on root density that can influence the development of slope instabilities. Roots have been sampled in each test-site for characterizing their strength, in terms of the relation between root diameter and root force at rupture. Root density and root strength have been combined in a physical model (Fiber Bundle Model), for the assessment of the trends of the root reinforcement in soil. The results of this study have contributed to identify root distribution behaviours, in different agricultural and environmental conditions, that have not been enough to guarantee slope stability or that can promote an increase of it. This can furnish important indications for a better identification of slopes more susceptible to slope instabilities and for improving land planning.

Nocturnal and daytime stomatal conductance respond to root-zone temperature in ‘Shiraz’ grapevines

PubMed Central

Rogiers, Suzy Y.; Clarke, Simon J.

2013-01-01

Background and Aims Daytime root-zone temperature may be a significant factor regulating water flux through plants. Water flux can also occur during the night but nocturnal stomatal response to environmental drivers such as root-zone temperature remains largely unknown. Methods Here nocturnal and daytime leaf gas exchange was quantified in ‘Shiraz’ grapevines (Vitis vinifera) exposed to three root-zone temperatures from budburst to fruit-set, for a total of 8 weeks in spring. Key Results Despite lower stomatal density, night-time stomatal conductance and transpiration rates were greater for plants grown in warm root-zones. Elevated root-zone temperature resulted in higher daytime stomatal conductance, transpiration and net assimilation rates across a range of leaf-to-air vapour pressure deficits, air temperatures and light levels. Intrinsic water-use efficiency was, however, lowest in those plants with warm root-zones. CO2 response curves of foliar gas exchange indicated that the maximum rate of electron transport and the maximum rate of Rubisco activity did not differ between the root-zone treatments, and therefore it was likely that the lower photosynthesis in cool root-zones was predominantly the result of a stomatal limitation. One week after discontinuation of the temperature treatments, gas exchange was similar between the plants, indicating a reversible physiological response to soil temperature. Conclusions In this anisohydric grapevine variety both night-time and daytime stomatal conductance were responsive to root-zone temperature. Because nocturnal transpiration has implications for overall plant water status, predictive climate change models using stomatal conductance will need to factor in this root-zone variable. PMID:23293018

Nocturnal and daytime stomatal conductance respond to root-zone temperature in 'Shiraz' grapevines.

PubMed

Rogiers, Suzy Y; Clarke, Simon J

2013-03-01

Daytime root-zone temperature may be a significant factor regulating water flux through plants. Water flux can also occur during the night but nocturnal stomatal response to environmental drivers such as root-zone temperature remains largely unknown. Here nocturnal and daytime leaf gas exchange was quantified in 'Shiraz' grapevines (Vitis vinifera) exposed to three root-zone temperatures from budburst to fruit-set, for a total of 8 weeks in spring. Despite lower stomatal density, night-time stomatal conductance and transpiration rates were greater for plants grown in warm root-zones. Elevated root-zone temperature resulted in higher daytime stomatal conductance, transpiration and net assimilation rates across a range of leaf-to-air vapour pressure deficits, air temperatures and light levels. Intrinsic water-use efficiency was, however, lowest in those plants with warm root-zones. CO(2) response curves of foliar gas exchange indicated that the maximum rate of electron transport and the maximum rate of Rubisco activity did not differ between the root-zone treatments, and therefore it was likely that the lower photosynthesis in cool root-zones was predominantly the result of a stomatal limitation. One week after discontinuation of the temperature treatments, gas exchange was similar between the plants, indicating a reversible physiological response to soil temperature. In this anisohydric grapevine variety both night-time and daytime stomatal conductance were responsive to root-zone temperature. Because nocturnal transpiration has implications for overall plant water status, predictive climate change models using stomatal conductance will need to factor in this root-zone variable.

Vegetative growth and cluster development in Shiraz grapevines subjected to partial root-zone cooling

PubMed Central

Rogiers, Suzy Y.; Clarke, Simon J.

2013-01-01

Heterogeneity in root-zone temperature both vertically and horizontally may contribute to the uneven vegetative and reproductive growth often observed across vineyards. An experiment was designed to assess whether the warmed half of a grapevine root zone could compensate for the cooled half in terms of vegetative growth and reproductive development. We divided the root system of potted Shiraz grapevines bilaterally and applied either a cool or a warm treatment to each half from budburst to fruit set. Shoot growth and inflorescence development were monitored over the season. Simultaneous cooling and warming of parts of the root system decreased shoot elongation, leaf emergence and leaf expansion below that of plants with a fully warmed root zone, but not to the same extent as those with a fully cooled root zone. Inflorescence rachis length, flower number and berry number after fertilization were smaller only in those vines exposed to fully cooled root zones. After terminating the treatments, berry enlargement and the onset of veraison were slowed in those vines that had been exposed to complete or partial root-zone cooling. Grapevines exposed to partial root-zone cooling were thus delayed in vegetative and reproductive development, but the inhibition was greater in those plants whose entire root system had been cooled. PMID:24244839

Contrasting hydraulic architecture and function in deep and shallow roots of tree species from a semi-arid habitat

PubMed Central

Johnson, Daniel M.; Brodersen, Craig R.; Reed, Mary; Domec, Jean-Christophe; Jackson, Robert B.

2014-01-01

Background and Aims Despite the importance of vessels in angiosperm roots for plant water transport, there is little research on the microanatomy of woody plant roots. Vessels in roots can be interconnected networks or nearly solitary, with few vessel–vessel connections. Species with few connections are common in arid habitats, presumably to isolate embolisms. In this study, measurements were made of root vessel pit sizes, vessel air-seeding pressures, pit membrane thicknesses and the degree of vessel interconnectedness in deep (approx. 20 m) and shallow (<10 cm) roots of two co-occurring species, Sideroxylon lanuginosum and Quercus fusiformis. Methods Scanning electron microscopy was used to image pit dimensions and to measure the distance between connected vessels. The number of connected vessels in larger samples was determined by using high-resolution computed tomography and three-dimensional (3-D) image analysis. Individual vessel air-seeding pressures were measured using a microcapillary method. The thickness of pit membranes was measured using transmission electron microscopy. Key Results Vessel pit size varied across both species and rooting depths. Deep Q. fusiformis roots had the largest pits overall (>500 µm) and more large pits than either shallow Q. fusiformis roots or S. lanuginosum roots. Vessel air-seeding pressures were approximately four times greater in Q. fusiformis than in S. lanuginosum and 1·3–1·9 times greater in shallow roots than in deep roots. Sideroxylon lanuginosum had 34–44 % of its vessels interconnected, whereas Q. fusiformis only had 1–6 % of its vessels connected. Vessel air-seeding pressures were unrelated to pit membrane thickness but showed a positive relationship with vessel interconnectedness. Conclusions These data support the hypothesis that species with more vessel–vessel integration are often less resistant to embolism than species with isolated vessels. This study also highlights the usefulness of tomography for vessel network analysis and the important role of 3-D xylem organization in plant hydraulic function. PMID:24363350

Exploring rock fissures: does a specialized root morphology explain endemism on granite outcrops?

PubMed Central

Poot, Pieter; Hopper, Stephen D.; van Diggelen, Josepha M.H.

2012-01-01

Background and Aims Worldwide, many plant species are confined to open, shallow-soil, rocky habitats. Although several hypotheses have been proposed to explain this habitat specificity, none has been convincing. We suggest that the high level of endemism on shallow soils is related to the edaphic specialization needed to survive in these often extremely drought-prone habitats. Previous research has shown that species endemic to ironstone communities in SW Australia have a specialized root morphology that enhances their chance to access fissures in the underlying rock. Here we test the generality of these findings for species that are confined to a shallow-soil habitat that is of much greater global significance: granite outcrops. Methods We compared temporal and spatial root growth and allocation of three endemic woody perennials of SW Australian granite outcrop communities with those of congeners occurring on nearby deeper soils. Seedlings of all species were grown in 1·2 m long custom-made containers with a transparent bottom that allowed monitoring of root growth over time. Key Results The granite outcrop endemics mostly differed in a predictable way from their congeners from deeper soils. They generally invested a larger portion of their biomass in roots, distributed their roots faster and more evenly over the container and had a lower specific root length. In different species pairs the outcrop endemics achieved their apparent advantage by a different combination of the aforementioned traits. Conclusions Our results are consistent with earlier work, indicating that species restricted to different types of drought-prone shallow-soil communities have undergone similar selection pressures. Although adaptive in their own habitat in terms of obtaining access to fissures in the underlying rock, these root system traits are likely to be maladaptive in deeper soil habitats. Therefore, our results may provide an explanation for the narrow endemism of many shallow-soil endemics. PMID:22238122

Exploring rock fissures: does a specialized root morphology explain endemism on granite outcrops?

PubMed

Poot, Pieter; Hopper, Stephen D; van Diggelen, Josepha M H

2012-07-01

Worldwide, many plant species are confined to open, shallow-soil, rocky habitats. Although several hypotheses have been proposed to explain this habitat specificity, none has been convincing. We suggest that the high level of endemism on shallow soils is related to the edaphic specialization needed to survive in these often extremely drought-prone habitats. Previous research has shown that species endemic to ironstone communities in SW Australia have a specialized root morphology that enhances their chance to access fissures in the underlying rock. Here we test the generality of these findings for species that are confined to a shallow-soil habitat that is of much greater global significance: granite outcrops. We compared temporal and spatial root growth and allocation of three endemic woody perennials of SW Australian granite outcrop communities with those of congeners occurring on nearby deeper soils. Seedlings of all species were grown in 1·2 m long custom-made containers with a transparent bottom that allowed monitoring of root growth over time. The granite outcrop endemics mostly differed in a predictable way from their congeners from deeper soils. They generally invested a larger portion of their biomass in roots, distributed their roots faster and more evenly over the container and had a lower specific root length. In different species pairs the outcrop endemics achieved their apparent advantage by a different combination of the aforementioned traits. Our results are consistent with earlier work, indicating that species restricted to different types of drought-prone shallow-soil communities have undergone similar selection pressures. Although adaptive in their own habitat in terms of obtaining access to fissures in the underlying rock, these root system traits are likely to be maladaptive in deeper soil habitats. Therefore, our results may provide an explanation for the narrow endemism of many shallow-soil endemics.

Evaluation of diffuse and preferential flow pathways of infiltrated precipitation and irrigation using oxygen and hydrogen isotopes

NASA Astrophysics Data System (ADS)

Ma, Bin; Liang, Xing; Liu, Shaohua; Jin, Menggui; Nimmo, John R.; Li, Jing

2017-05-01

Subsurface-water flow pathways in three different land-use areas (non-irrigated grassland, poplar forest, and irrigated arable land) in the central North China Plain were investigated using oxygen (18O) and hydrogen (2H) isotopes in samples of precipitation, soils, and groundwater. Soil water in the top 10 cm was significantly affected by both evaporation and infiltration. Water at 10-40 cm depth in the grassland and arable land, and 10-60 cm in poplar forest, showed a relatively short residence time, as a substantial proportion of antecedent soil water was mixed with a 92-mm storm infiltration event, whereas below those depths (down to 150 cm), depleted δ18O spikes suggested that some storm water bypassed the shallow soil layers. Significant differences, in soil-water content and δ18O values, within a small area, suggested that the proportion of immobile soil water and water flowing in subsurface pathways varies depending on local vegetation cover, soil characteristics and irrigation applications. Soil-water δ18O values revealed that preferential flow and diffuse flow coexist. Preferential flow was active within the root zone, independent of antecedent soil-water content, in both poplar forest and arable land, whereas diffuse flow was observed in grassland. The depleted δ18O spikes at 20-50 cm depth in the arable land suggested the infiltration of irrigation water during the dry season. Temporal isotopic variations in precipitation were subdued in the shallow groundwater, suggesting more complete mixing of different input waters in the unsaturated zone before reaching the shallow groundwater.

Simulating vegetation controls on hurricane-induced shallow landslides with a distributed ecohydrological model

Treesearch

Taehee Hwang; Lawrence E. Band; T. C. Hales; Chelcy F. Miniat; James M. Vose; Paul V. Bolstad; Brian Miles; Katie Price

2015-01-01

The spatial distribution of shallow landslides in steep forested mountains is strongly controlled by aboveground and belowground biomass, including the distribution of root cohesion. While remote sensing of aboveground canopy properties is relatively advanced, estimating the spatial distribution of root cohesion at the forest landscape scale remains challenging. We...

The evolution of root zone moisture storage capacities after deforestation: a step towards hydrological predictions under change?

NASA Astrophysics Data System (ADS)

Nijzink, Remko C.; Hutton, Christopher; Pechlivanidis, Ilias; Capell, René; Arheimer, Berit; Freer, Jim; Han, Dawei; Wagener, Thorsten; McGuire, Kevin; Savenije, Hubert; Hrachowitz, Markus

2017-04-01

The moisture storage available to vegetation is a key parameter in the hydrological functioning of ecosystems. This parameter, the root zone storage capacity, determines the partitioning between runoff and transpiration, but is impossible to observe at the catchment scale. In this research, data from the experimental forests of HJ Andrews (Oregon, USA) and Hubbard Brook (New Hampshire, USA) was used to test the hypotheses that: (1) the root zone storage capacity significantly changes after deforestation, (2) changes in the root zone storage capacity can to a large extent explain post-treatment changes to the hydrological regimes and that (3) a time-dynamic formulation of the root zone storage can improve the performance of a hydrological model. At first, root zone storage capacities were estimated based on a simple, water-balance based method. Briefly, the maximum difference between cumulative rainfall and estimated transpiration was determined, which could be considered a proxy for root zone storage capacity. These values were compared with root zone storage capacities obtained from four conceptual models (HYPE, HYMOD, FLEX, TUW), calibrated for consecutive 2-year windows. Both methods showed a sharp decline in root zone storage capacity after deforestation, which was followed by a gradual recovery signal. It was found in a trend analysis that these recovery periods took between 5 and 13 years for the different catchments. Eventually, one of the models was adjusted to allow for a time-dynamic formulation of root zone storage capacity. This adjusted model showed improvements in model performance as evaluated by 28 hydrological signatures, such as rising limb density or peak flows. Thus, this research clearly shows the time-dynamic character of a crucial parameter, which is often considered to remain constant in time. Root zone storage capacities are strongly affected by deforestation, leading to changes in hydrological regimes, and time-dynamic formulations of root zone storage are therefore necessary in systems under change.

30 CFR 250.415 - What must my casing and cementing programs include?

Code of Federal Regulations, 2010 CFR

2010-07-01

... included in API RP 65, Recommended Practice for Cementing Shallow Water Flow Zones in Deep Water Wells... and are in either of the following two areas: (1) An “area with an unknown shallow water flow potential” is a zone or geologic formation where neither the presence nor absence of potential for a shallow...

Tracing long-term vadose zone processes at the Nevada Test Site, USA

PubMed Central

Hunt, James R.; Tompson, Andrew F. B.

2010-01-01

The nuclear weapons testing programme of the USA has released radionuclides to the subsurface at the Nevada Test Site. One of these tests has been used to study the hydrological transport of radionuclides for over 25 years in groundwater and the deep unsaturated zone. Ten years after the weapon’s test, a 16 year groundwater pumping experiment was initiated to study the mobility of radionuclides from that test in an alluvial aquifer. The continuously pumped groundwater was released into an unlined ditch where some of the water infiltrated into the 200 m deep vadose zone. The pumped groundwater had well-characterized tritium activities that were utilized to trace water migration in the shallow and deep vadose zones. Within the near-surface vadose zone, tritium levels in the soil water are modelled by a simple one-dimensional, analytical wetting front model. In the case of the near-surface soils at the Cambric Ditch experimental site, water flow and salt accumulation appear to be dominated by rooted vegetation, a mechanism not included within the wetting front model. Simulation results from a two-dimensional vadose groundwater flow model illustrate the dominance of vertical flow in the vadose zone and the recharge of the aquifer with the pumped groundwater. The long-time series of hydrological data provides opportunities to understand contaminant transport processes better in the vadose zone with an appropriate level of modelling. PMID:21785525

Soil moisture controls on phenology and productivity in a semi-arid critical zone.

PubMed

Cleverly, James; Eamus, Derek; Restrepo Coupe, Natalia; Chen, Chao; Maes, Wouter; Li, Longhui; Faux, Ralph; Santini, Nadia S; Rumman, Rizwana; Yu, Qiang; Huete, Alfredo

2016-10-15

The Earth's Critical Zone, where physical, chemical and biological systems interact, extends from the top of the canopy to the underlying bedrock. In this study, we investigated soil moisture controls on phenology and productivity of an Acacia woodland in semi-arid central Australia. Situated on an extensive sand plain with negligible runoff and drainage, the carry-over of soil moisture content (θ) in the rhizosphere enabled the delay of phenology and productivity across seasons, until conditions were favourable for transpiration of that water to prevent overheating in the canopy. Storage of soil moisture near the surface (in the top few metres) was promoted by a siliceous hardpan. Pulsed recharge of θ above the hardpan was rapid and depended upon precipitation amount: 150mm storm(-1) resulted in saturation of θ above the hardpan (i.e., formation of a temporary, discontinuous perched aquifer above the hardpan in unconsolidated soil) and immediate carbon uptake by the vegetation. During dry and inter-storm periods, we inferred the presence of hydraulic lift from soil storage above the hardpan to the surface due to (i) regular daily drawdown of θ in the reservoir that accumulates above the hardpan in the absence of drainage and evapotranspiration; (ii) the dimorphic root distribution wherein most roots were found in dry soil near the surface, but with significant root just above the hardpan; and (iii) synchronisation of phenology amongst trees and grasses in the dry season. We propose that hydraulic redistribution provides a small amount of moisture that maintains functioning of the shallow roots during long periods when the surface soil layer was dry, thereby enabling Mulga to maintain physiological activity without diminishing phenological and physiological responses to precipitation when conditions were favourable to promote canopy cooling. Copyright © 2016 Elsevier B.V. All rights reserved.

A major QTL controlling deep rooting on rice chromosome 4

PubMed Central

Uga, Yusaku; Yamamoto, Eiji; Kanno, Noriko; Kawai, Sawako; Mizubayashi, Tatsumi; Fukuoka, Shuichi

2013-01-01

Drought is the most serious abiotic stress that hinders rice production under rainfed conditions. Breeding for deep rooting is a promising strategy to improve the root system architecture in shallow-rooting rice cultivars to avoid drought stress. We analysed the quantitative trait loci (QTLs) for the ratio of deep rooting (RDR) in three F2 mapping populations derived from crosses between each of three shallow-rooting varieties (‘ARC5955', ‘Pinulupot1', and ‘Tupa729') and a deep-rooting variety, ‘Kinandang Patong'. In total, we detected five RDR QTLs on chromosomes 2, 4, and 6. In all three populations, QTLs on chromosome 4 were found to be located at similar positions; they explained from 32.0% to 56.6% of the total RDR phenotypic variance. This suggests that one or more key genetic factors controlling the root growth angle in rice is located in this region of chromosome 4. PMID:24154623

A major QTL controlling deep rooting on rice chromosome 4.

PubMed

Uga, Yusaku; Yamamoto, Eiji; Kanno, Noriko; Kawai, Sawako; Mizubayashi, Tatsumi; Fukuoka, Shuichi

2013-10-24

Drought is the most serious abiotic stress that hinders rice production under rainfed conditions. Breeding for deep rooting is a promising strategy to improve the root system architecture in shallow-rooting rice cultivars to avoid drought stress. We analysed the quantitative trait loci (QTLs) for the ratio of deep rooting (RDR) in three F₂ mapping populations derived from crosses between each of three shallow-rooting varieties ('ARC5955', 'Pinulupot1', and 'Tupa729') and a deep-rooting variety, 'Kinandang Patong'. In total, we detected five RDR QTLs on chromosomes 2, 4, and 6. In all three populations, QTLs on chromosome 4 were found to be located at similar positions; they explained from 32.0% to 56.6% of the total RDR phenotypic variance. This suggests that one or more key genetic factors controlling the root growth angle in rice is located in this region of chromosome 4.

Vegetation root zone storage and rooting depth, derived from local calibration of a global hydrological model

NASA Astrophysics Data System (ADS)

van der Ent, R.; Van Beek, R.; Sutanudjaja, E.; Wang-Erlandsson, L.; Hessels, T.; Bastiaanssen, W.; Bierkens, M. F.

2017-12-01

The storage and dynamics of water in the root zone control many important hydrological processes such as saturation excess overland flow, interflow, recharge, capillary rise, soil evaporation and transpiration. These processes are parameterized in hydrological models or land-surface schemes and the effect on runoff prediction can be large. Root zone parameters in global hydrological models are very uncertain as they cannot be measured directly at the scale on which these models operate. In this paper we calibrate the global hydrological model PCR-GLOBWB using a state-of-the-art ensemble of evaporation fields derived by solving the energy balance for satellite observations. We focus our calibration on the root zone parameters of PCR-GLOBWB and derive spatial patterns of maximum root zone storage. We find these patterns to correspond well with previous research. The parameterization of our model allows for the conversion of maximum root zone storage to root zone depth and we find that these correspond quite well to the point observations where available. We conclude that climate and soil type should be taken into account when regionalizing measured root depth for a certain vegetation type. We equally find that using evaporation rather than discharge better allows for local adjustment of root zone parameters within a basin and thus provides orthogonal data to diagnose and optimize hydrological models and land surface schemes.

Vegetation root zone storage and rooting depth, derived from local calibration of a global hydrological model

NASA Astrophysics Data System (ADS)

van der Ent, Ruud; van Beek, Rens; Sutanudjaja, Edwin; Wang-Erlandsson, Lan; Hessels, Tim; Bastiaanssen, Wim; Bierkens, Marc

2017-04-01

The storage and dynamics of water in the root zone control many important hydrological processes such as saturation excess overland flow, interflow, recharge, capillary rise, soil evaporation and transpiration. These processes are parameterized in hydrological models or land-surface schemes and the effect on runoff prediction can be large. For root zone parameters in global hydrological models are very uncertain as they cannot be measured directly at the scale on which these models operate. In this paper we calibrate the global hydrological model PCR-GLOBWB using a state-of-the-art ensemble of evaporation fields derived by solving the energy balance for satellite observations. We focus our calibration on the root zone parameters of PCR-GLOBWB and derive spatial patterns of maximum root zone storage. We find these patterns to correspond well with previous research. The parameterization of our model allows for the conversion of maximum root zone storage to root zone depth and we find that these correspond quite well to the point observations where available. We conclude that climate and soil type should be taken into account when regionalizing measured root depth for a certain vegetation type. We equally find that using evaporation rather than discharge better allows for local adjustment of root zone parameters within a basin and thus provides orthogonal data to diagnose and optimize hydrological models and land surface schemes.

Polar transport of 45Ca2+ across the elongation zone of gravistimulated roots

NASA Technical Reports Server (NTRS)

Lee, J. S.; Evans, M. L.

1985-01-01

The movement of calcium across the elongation zone of gravistimulated primary roots of maize (Zea mays L.) was measured using 45Ca2+. Radioactive calcium was applied to one side of the elongation zone about 4 mm back from the root tip and the distribution of radioactivity across the root in the region of application was determined using scintillation spectrometry. The movement of 45Ca2+ across the elongation zone was non-polar in vertically oriented roots. In gravistimulated roots the movement of label was polarized with about twice as much label moving from top to bottom as from bottom to top. A variety of treatments which interfere with gravitropism was found to eliminate the polar movement of 45Ca2+ across the elongation zone. In maize cultivars which require light for gravitropic competency, dark grown roots exhibited neither gravitropism nor polar movement of 45Ca2+ across the elongation zone. Upon illumination the roots developed but gravitropic competency and gravity-induced polar movement of 45Ca2+ across the elongation zone. Similarly, roots of light-grown seedlings lost both gravitropic competency and 45Ca2+ transport polarity upon transfer to the dark. The results indicate a close correlation between calcium movement and gravitropism in primary roots in maize.

Evaluation of geophysical logs, Phase I, at Willow Grove Naval Air Station, Montgomery County, Pennsylvania

USGS Publications Warehouse

Conger, R.W.

1997-01-01

Between April and June 1997, the U.S. Navy contracted Brown and Root Environmental, Inc., to drill 20 monitor wells at the Willow Grove Naval Air Station in Horsham Township, Montgomery County, Pa. The wells were installed to monitor water levels and allow collection of water samples from shallow, intermediate, and deep water-bearing zones. Analysis of the samples will determine the horizontal and vertical distribution of any contaminated ground water migrating from known contaminant sources. Eight wells were drilled near the Fire Training Area (Site 5), five wells near the 9th Street Landfill (Site 3), four wells at the Antenna Field Landfill (Site 2), and three wells near Privet Road Compound (Site 1). Depths range from 73 to 167 feet below land surface. The U.S. Geological Survey conducted borehole-geophysical and borehole-video logging to identify water-bearing zones so that appropriate intervals could be screened in each monitor well. Geophysical logs were run on the 20 monitor wells and 1 existing well. Video logs were run on 16 wells. Caliper and video logs were used to locate fractures, inflections on fluid-temperature and fluid-resistivity logs were used to locate possible water-bearing fractures, and flowmeter measurements verified these locations. Single-point-resistance and natural-gamma logs provided information on stratigraphy. After interpretation of geophysical logs, video logs, and driller's notes, all wells were screened such that water-level fluctuations could be monitored and discrete water samples collected from one or more shallow and intermediate water-bearing zones in each borehole.

Is rhizosphere remediation sufficient for sustainable revegetation of mine tailings?

PubMed

Huang, Longbin; Baumgartl, Thomas; Mulligan, David

2012-07-01

Revegetation of mine tailings (fine-grained waste material) starts with the reconstruction of root zones, consisting of a rhizosphere horizon (mostly topsoil and/or amended tailings) and the support horizon beneath (i.e. equivalent to subsoil - mostly tailings), which must be physically and hydro-geochemically stable. This review aims to discuss key processes involved in the development of functional root zones within the context of direct revegetation of tailings and introduces a conceptual process of rehabilitating structure and function in the root zones based on a state transition model. Field studies on the revegetation of tailings (from processing base metal ore and bauxite residues) are reviewed. Particular focus is given to tailings' properties that limit remediation effectiveness. Aspects of root zone reconstruction and vegetation responses are also discussed. When reconstructing a root zone system, it is critical to restore physical structure and hydraulic functions across the whole root zone system. Only effective and holistically restored systems can control hydro-geochemical mobility of acutely and chronically toxic factors from the underlying horizon and maintain hydro-geochemical stability in the rhizosphere. Thereafter, soil biological capacity and ecological linkages (i.e. carbon and nutrient cycling) may be rehabilitated to integrate the root zones with revegetated plant communities into sustainable plant ecosystems. A conceptual framework of system transitions between the critical states of root zone development has been proposed. This will illustrate the rehabilitation process in root zone reconstruction and development for direct revegetation with sustainable plant communities. Sustainable phytostabilization of tailings requires the systematic consideration of hydro-geochemical interactions between the rhizosphere and the underlying supporting horizon. It further requires effective remediation strategies to develop hydro-geochemically stable and biologically functional root zones, which can facilitate the recovery of the microbial community and ecological linkages with revegetated plant communities.

Transport of tritium contamination to the atmosphere in an arid environment

USGS Publications Warehouse

Garcia, C. Amanda; Andraski, Brian J.; Johnson, Michael J.; Stonestrom, David A.; Michel, Robert L.; Cooper, C.A.; Wheatcraft, S.W.

2009-01-01

Soil–plant–atmosphere interactions strongly influence water movement in desert unsaturated zones, but little is known about how such interactions affect atmospheric release of subsurface water-borne contaminants. This 2-yr study, performed at the U.S. Geological Survey's Amargosa Desert Research Site in southern Nevada, quantified the magnitude and spatiotemporal variability of tritium (3H) transport from the shallow unsaturated zone to the atmosphere adjacent to a low-level radioactive waste (LLRW) facility. Tritium fluxes were calculated as the product of 3H concentrations in water vapor and respective evaporation and transpiration water-vapor fluxes. Quarterly measured 3H concentrations in soil water vapor and in leaf water of the dominant creosote-bush [Larrea tridentata (DC.) Coville] were spatially extrapolated and temporally interpolated to develop daily maps of contamination across the 0.76-km2 study area. Maximum plant and root-zone soil concentrations (4200 and 8700 Bq L−1, respectively) were measured 25 m from the LLRW facility boundary. Continuous evaporation was estimated using a Priestley–Taylor model and transpiration was computed as the difference between measured eddy-covariance evapotranspiration and estimated evaporation. The mean evaporation/transpiration ratio was 3:1. Tritium released from the study area ranged from 0.12 to 12 μg d−1 and totaled 1.5 mg (8.2 × 1010 Bq) over 2 yr. Tritium flux variability was driven spatially by proximity to 3H source areas and temporally by changes in 3H concentrations and in the partitioning between evaporation and transpiration. Evapotranspiration removed and limited penetration of precipitation beneath native vegetation and fostered upward movement and release of 3H from below the root zone.

Sediment transport by fishes in Harrington Sound, Bermuda

NASA Astrophysics Data System (ADS)

Alheit, Jürgen

1983-11-01

Harrington Sound, Bermuda, is a shallow subtropical lagoon with carbonate sediments. The most important fishes in this lagoon, in terms of biomass, are grunts (Haemulon aurolineatum, H. flavolineatum, H. sciurus) and a sea-bream (Diplodus bermudensis). These undertake diel feeding migrations from the shallow rocky zone towards the deeper sand and mud zones. When feeding on zoobenthos they cannot avoid swallowing carbonate sediment particles. These sediment particles pass through the alimentary canal of the fishes and are deposited again, after digestion of the food, as faeces in the shallow zones. Thus, the fishes transport the sediment in an unusual direction, from the deep to the shallow zones, in effect against the force of gravity. By recording the fish stock densities, digestion rates, and calcium carbonate content of fish stomach and guts, it was possible to estimate the amount of sediment transported by the fishes. In Harrington Sound, this amounts annually to 4530 kg calcium carbonate, 40% of which is deposited in the very shallow areas. The pH-values measured in fish stomachs seem to be acidic enough for the dissolution of carbonate sediment particles when transported by fishes.

40 CFR 230.43 - Vegetated shallows.

Code of Federal Regulations, 2011 CFR

2011-07-01

... Special Aquatic Sites § 230.43 Vegetated shallows. (a) Vegetated shallows are permanently inundated areas that under normal circumstances support communities of rooted aquatic vegetation, such as turtle grass...) releasing chemicals that adversely affect plants and animals; (4) increasing turbidity levels, thereby...

Root production, distribution, and turnover in conventional and organic northern highbush blueberry systems

USDA-ARS?s Scientific Manuscript database

Northern highbush blueberry is a shallow-rooted crop with very fine, fibrous roots. Recently, we installed minirhizotrons (root observation tubes) in a conventional and an organic blueberry planting in western Oregon. We wanted to know exactly when and where new roots were being produced and determi...

Root production, distribution, and turnover in conventional and organic northern highbush blueberry systems

USDA-ARS?s Scientific Manuscript database

Northern highbush blueberry (Vaccinium corymbosum L.) is a shallow-rooted crop with very fine, fibrous roots. Recently, we installed minirhizotrons (root observation tubes) in a conventional and an organic blueberry planting in western Oregon. We wanted to know exactly when and where new roots were ...

Hurricane Wilma's impact on overall soil elevation and zones within the soil profile in a mangrove forest

USGS Publications Warehouse

Whelan, K.R.T.; Smith, T. J.; Anderson, G.H.; Ouellette, M.L.

2009-01-01

Soil elevation affects tidal inundation period, inundation frequency, and overall hydroperiod, all of which are important ecological factors affecting species recruitment, composition, and survival in wetlands. Hurricanes can dramatically affect a site's soil elevation. We assessed the impact of Hurricane Wilma (2005) on soil elevation at a mangrove forest location along the Shark River in Everglades National Park, Florida, USA. Using multiple depth surface elevation tables (SETs) and marker horizons we measured soil accretion, erosion, and soil elevation. We partitioned the effect of Hurricane Wilma's storm deposit into four constituent soil zones: surface (accretion) zone, shallow zone (0–0.35 m), middle zone (0.35–4 m), and deep zone (4–6 m). We report expansion and contraction of each soil zone. Hurricane Wilma deposited 37.0 (± 3.0 SE) mm of material; however, the absolute soil elevation change was + 42.8 mm due to expansion in the shallow soil zone. One year post-hurricane, the soil profile had lost 10.0 mm in soil elevation, with 8.5 mm of the loss due to erosion. The remaining soil elevation loss was due to compaction from shallow subsidence. We found prolific growth of new fine rootlets (209 ± 34 SE g m−2) in the storm deposited material suggesting that deposits may become more stable in the near future (i.e., erosion rate will decrease). Surficial erosion and belowground processes both played an important role in determining the overall soil elevation. Expansion and contraction in the shallow soil zone may be due to hydrology, and in the middle and bottom soil zones due to shallow subsidence. Findings thus far indicate that soil elevation has made substantial gains compared to site specific relative sea-level rise, but data trends suggest that belowground processes, which differ by soil zone, may come to dominate the long term ecological impact of storm deposit.

The Evolution of Root Zone Storage Capacity after Land Use Change

NASA Astrophysics Data System (ADS)

Nijzink, Remko C.; Hutton, Christopher; Pechlivanidis, Ilias; Capell, René; Arheimer, Berit; Wagener, Thorsten; Savenije, Hubert H. G.; Hrachowitz, Markus

2016-04-01

Root zone storage capacity forms a crucial parameter in ecosystem functioning as it is the key parameter that determines the partitioning between runoff and transpiration. There is increasing evidence from several case studies for specific plants that vegetation adapts to the critical situation of droughts. For example, trees will, on the long term, try to improve their internal hydraulic conductivity after droughts, for example by allocating more biomass for roots. In spite of this understanding, the water storage capacity in the root zone is often treated as constant in hydrological models. In this study, it was hypothesized that root zone storage capacities are altered by deforestation and the regrowth of the ecosystem. Three deforested sub catchments as well as not affected, nearby control catchments of the experimental forests of HJ Andrews and Hubbard Brook were selected for this purpose. Root zone storage capacities were on the one hand estimated by a climate-based approach similar to Gao et al. (2014), making use of simple water balance considerations to determine the evaporative demand of the system. In this way, the maximum deficit between evaporative demand and precipitation allows a robust estimation of the root zone storage capacity. On the other hand, three conceptual hydrological models (FLEX, HYPE, HYMOD) were calibrated in a moving window approach for all catchments. The obtained model parameter values representing the root zone storage capacities of the individual catchments for each moving window period were then compared to the estimates derived from climate data for the same periods. Model- and climate-derived estimates of root zone storage capacities both showed a similar evolution. In the deforested catchments, considerable reductions of the root zone storage capacities, compared to the pre-treatment situation and control catchments, were observed. In addition, the years after forest clearing were characterized by a gradual recovery of the root zone storage capacities, converging to new equilibrium conditions and linked to forest regrowth. Further trend analysis suggested a relatively quick hydrological recovery between 5 and 15 years in the study catchments. The results lend evidence to the role of both, climate and vegetation dynamics for the development of root zone systems and their controlling influence on hydrological response dynamics.

Modeling of Near-Surface Leakage and Seepage of CO2 for Risk Characterization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Oldenburg, Curtis M.; Unger, Andre A.J.

2004-02-18

The injection of carbon dioxide (CO2) into deep geologic carbon sequestration sites entails risk that CO2 will leak away from the primary storage formation and migrate upwards to the unsaturated zone from which it can seep out of the ground. We have developed a coupled modeling framework called T2CA for simulating CO2 leakage and seepage in the subsurface and in the atmospheric surface layer. The results of model simulations can be used to calculate the two key health, safety, and environmental (HSE) risk drivers, namely CO2 seepage flux and nearsurface CO2 concentrations. Sensitivity studies for a subsurface system with amore » thick unsaturated zone show limited leakage attenuation resulting in correspondingly large CO2 concentrations in the shallow subsurface. Large CO2 concentrations in the shallow subsurface present a risk to plant and tree roots, and to humans and other animals in subsurface structures such as basements or utility vaults. Whereas CO2 concentrations in the subsurface can be high, surfacelayer winds reduce CO2 concentrations to low levels for the fluxes investigated. We recommend more verification and case studies be carried out with T2CA, along with the development of extensions to handle additional scenarios such as calm conditions, topographic effects, and catastrophic surface-layer discharge events.« less

Evaluation of diffuse and preferential flow pathways of infiltratedprecipitation and irrigation using oxygen and hydrogen isotopes

USGS Publications Warehouse

Ma, Bin; Liang, Xing; Liu, Shaohua; Jin, Menggui; Nimmo, John R.; Li, Jingxin

2017-01-01

Subsurface-water flow pathways in three different land-use areas (non-irrigated grassland, poplar forest, and irrigated arable land) in the central North China Plain were investigated using oxygen (18O) and hydrogen (2H) isotopes in samples of precipitation, soils, and groundwater. Soil water in the top 10 cm was significantly affected by both evaporation and infiltration. Water at 10–40 cm depth in the grassland and arable land, and 10–60 cm in poplar forest, showed a relatively short residence time, as a substantial proportion of antecedent soil water was mixed with a 92-mm storm infiltration event, whereas below those depths (down to 150 cm), depleted δ18O spikes suggested that some storm water bypassed the shallow soil layers. Significant differences, in soil-water content and δ18O values, within a small area, suggested that the proportion of immobile soil water and water flowing in subsurface pathways varies depending on local vegetation cover, soil characteristics and irrigation applications. Soil-water δ18O values revealed that preferential flow and diffuse flow coexist. Preferential flow was active within the root zone, independent of antecedent soil-water content, in both poplar forest and arable land, whereas diffuse flow was observed in grassland. The depleted δ18O spikes at 20–50 cm depth in the arable land suggested the infiltration of irrigation water during the dry season. Temporal isotopic variations in precipitation were subdued in the shallow groundwater, suggesting more complete mixing of different input waters in the unsaturated zone before reaching the shallow groundwater.

Simulation of the evolution of root water foraging strategies in dry and shallow soils.

PubMed

Renton, Michael; Poot, Pieter

2014-09-01

The dynamic structural development of plants can be seen as a strategy for exploiting the limited resources available within their environment, and we would expect that evolution would lead to efficient strategies that reduce costs while maximizing resource acquisition. In particular, perennial species endemic to habitats with shallow soils in seasonally dry environments have been shown to have a specialized root system morphology that may enhance access to water resources in the underlying rock. This study aimed to explore these hypotheses by applying evolutionary algorithms to a functional-structural root growth model. A simulation model of a plant's root system was developed, which represents the dynamics of water uptake and structural growth. The model is simple enough for evolutionary optimization to be computationally feasible, yet flexible enough to allow a range of structural development strategies to be explored. The model was combined with an evolutionary algorithm in order to investigate a case study habitat with a highly heterogeneous distribution of resources, both spatially and temporally--the situation of perennial plants occurring on shallow soils in seasonally dry environments. Evolution was simulated under two contrasting fitness criteria: (1) the ability to find wet cracks in underlying rock, and (2) maximizing above-ground biomass. The novel approach successfully resulted in the evolution of more efficient structural development strategies for both fitness criteria. Different rooting strategies evolved when different criteria were applied, and each evolved strategy made ecological sense in terms of the corresponding fitness criterion. Evolution selected for root system morphologies which matched those of real species from corresponding habitats. Specialized root morphology with deeper rather than shallower lateral branching enhances access to water resources in underlying rock. More generally, the approach provides insights into both evolutionary processes and ecological costs and benefits of different plant growth strategies.

Root Apex Transition Zone As Oscillatory Zone

PubMed Central

Baluška, František; Mancuso, Stefano

2013-01-01

Root apex of higher plants shows very high sensitivity to environmental stimuli. The root cap acts as the most prominent plant sensory organ; sensing diverse physical parameters such as gravity, light, humidity, oxygen, and critical inorganic nutrients. However, the motoric responses to these stimuli are accomplished in the elongation region. This spatial discrepancy was solved when we have discovered and characterized the transition zone which is interpolated between the apical meristem and the subapical elongation zone. Cells of this zone are very active in the cytoskeletal rearrangements, endocytosis and endocytic vesicle recycling, as well as in electric activities. Here we discuss the oscillatory nature of the transition zone which, together with several other features of this zone, suggest that it acts as some kind of command center. In accordance with the early proposal of Charles and Francis Darwin, cells of this root zone receive sensory information from the root cap and instruct the motoric responses of cells in the elongation zone. PMID:24106493

Defining the natural fracture network in a shale gas play and its cover succession: The case of the Utica Shale in eastern Canada

NASA Astrophysics Data System (ADS)

Ladevèze, P.; Séjourné, S.; Rivard, C.; Lavoie, D.; Lefebvre, R.; Rouleau, A.

2018-03-01

In the St. Lawrence sedimentary platform (eastern Canada), very little data are available between shallow fresh water aquifers and deep geological hydrocarbon reservoir units (here referred to as the intermediate zone). Characterization of this intermediate zone is crucial, as the latter controls aquifer vulnerability to operations carried out at depth. In this paper, the natural fracture networks in shallow aquifers and in the Utica shale gas reservoir are documented in an attempt to indirectly characterize the intermediate zone. This study used structural data from outcrops, shallow observation well logs and deep shale gas well logs to propose a conceptual model of the natural fracture network. Shallow and deep fractures were categorized into three sets of steeply-dipping fractures and into a set of bedding-parallel fractures. Some lithological and structural controls on fracture distribution were identified. The regional geologic history and similarities between the shallow and deep fracture datasets allowed the extrapolation of the fracture network characterization to the intermediate zone. This study thus highlights the benefits of using both datasets simultaneously, while they are generally interpreted separately. Recommendations are also proposed for future environmental assessment studies in which the existence of preferential flow pathways and potential upward fluid migration toward shallow aquifers need to be identified.

Effect of tree roots on shallow-seated landslides

Treesearch

Kazutoki Abe Abe; Robert R. Ziemer

1991-01-01

Forest vegetation, especially tree roots, helps stabilize hillslopes by reinforcing soil shear strength. To evaluate the effect of tree roots on slope stability, information about the amount of roots and their strength should be known. A simulation model for the root distribution of Cryptomeria japonica was proposed where the number of roots in each 0.5-cm diameter...

Evolution of Root Zone Storage after Land Use Change

NASA Astrophysics Data System (ADS)

Nijzink, R.; Hutton, C.; Capell, R.; Pechlivanidis, I.; Hrachowitz, M.; Savenije, H.

2015-12-01

It has been acknowledged for some time that a coupling exists between vegetation, climate and hydrological processes (e.g. Eagleson, 1982a, Rodriguez-Iturbe,2001 ). Recently, Gao et al.(2014) demonstrated that one of the core parameters of hydrological functioning, the catchment-scale root zone water storage capacity, can be estimated based on climate data alone. It was shown that ecosystems develop root zone storage capacities that allow vegetation to bridge droughts with return periods of about 20 years. As a consequence, assuming that the evaporative demand determines the root zone storage capacity, land use changes, such as deforestation, should have an effect on the development of this capacity . In this study it was tested to which extent deforestation affects root zone storage capacities. To do so, four different hydrological models were calibrated in a moving window approach after deforestation occurred. In this way, model based estimates of the storage capacity in time were obtained. This was compared with short term estimates of root zone storage capacities based on a climate based method similar to Gao et al.(2014). In addition, the equilibrium root zone storage capacity was determined with the total time series of an unaffected control catchment. Preliminary results indicate that models tend to adjust their storage capacity to the values found by the climate based method. This is strong evidence that the root zone storage is determined by the evaporative demand of vegetation. Besides, root zones storage capacities develop towards an equilibrium value where the ecosystem is in balance, further highlighting the evolving, time dynamic character of hydrological systems.

Cell Wall Pectin and its Methyl-esterification in Transition Zone Determine Al Resistance in Cultivars of Pea (Pisum sativum)

PubMed Central

Li, Xuewen; Li, Yalin; Qu, Mei; Xiao, Hongdong; Feng, Yingming; Liu, Jiayou; Wu, Lishu; Yu, Min

2016-01-01

The initial response of plants to aluminum (Al) is the inhibition of root elongation, while the transition zone is the most Al sensitive zone in the root apex, which may sense the presence of Al and regulate the responses of root to Al toxicity. In the present study, the effect of Al treatment (30 μM, 24 h) on root growth, Al accumulation, and properties of cell wall of two pea (Pisum sativum L.) cultivars, cv Onward (Al-resistant) and cv Sima (Al-sensitive), were studied to disclose whether the response of root transition zone to Al toxicity determines Al resistance in pea cultivars. The lower relative root elongation (RRE) and higher Al content were founded in cv Sima compared with cv Onward, which were related to Al-induced the increase of pectin in root segments of both cultivars. The increase of pectin is more prominent in Al-sensitive cultivar than in Al-resistant cultivar. Aluminum toxicity also induced the increase of pectin methylesterases (PME), which is 2.2 times in root transition zone in Al-sensitive cv Sima to that of Al resistant cv Onward, thus led to higher demethylesterified pectin content in root transition zone of Al-sensitive cv Sima. The higher demethylesterified pectin content in root transition zone resulted in more Al accumulation in the cell wall and cytosol in Al-sensitive cv Sima. Our results provide evidence that the increase of pectin content and PME activity under Al toxicity cooperates to determine Al sensitivity in root transition zone that confers Al resistance in cultivars of pea (Pisum sativum). PMID:26870060

The influence of vegetation cover and soil physical properties on deflagration of shallow landslides - Nova Friburgo, RJ / Brazil

NASA Astrophysics Data System (ADS)

de Oliveira Marques, Maria Clara; Silva, Roberta; Fraga, Joana; Luiza Coelho Netto, Ana; Mululo Sato, Anderson

2017-04-01

In 2011, the mountainous region of the State of Rio de Janeiro (Brazil) suffered enormous social and economic losses due to thousands of landslides caused by an extreme rainfall event. The mapping of the scars of these landslides in an area of 421 km2 in the municipality of Nova Friburgo, RJ - Brazil resulted in a total of 3622, and 89% of these scars were located in areas covered by grasses and forests. Despite the unexpected result (64% of scars in forest areas), field evidence has shown that most of the forest fragments in the municipality are in the initial stages of succession and in different states of degradation, evidencing the need for a better understanding of the role of these forests in the detonation and propagation of landslides. Two slope forest areas with different ages (20 and 50 years) were evaluated in relation to the vegetative aspects that influence the stability of the slopes in each area. Hydrological monitoring, including precipitation, interception by manual and automatic method, soil moisture and subsurface flows were performed in two different areas: forest and grass. Soil moisture was monitored by granular matrix sensors and flows by collecting troughs in trenches at depths of 0 cm, 20 cm, 50 cm, 100 cm, 150 cm and 220 cm, which were also analyzed for biomass and length of thick roots (> 2 mm diameter) and thin roots (< 2 mm diameter) and for the soil physical properties (particle size, aggregate stability, porosity and hydraulic conductivity in situ). In the grass area, the lower soil structure in relation to the forest areas makes it difficult to transmit the water through the soil matrix. During the monitoring period, that area preserved the moisture in depths of 100 cm, 150 cm and 220 cm. The fasciculate root system of the grasses increased the infiltration of water at the top of the soil, favouring the formation of more superficial saturation zones in the heavy rains, due to the hydraulic discontinuities. In forest areas, infiltration by preferential paths allows the concentration of water in the depths in which they are terminal increasing the pore water pressure. Soil saturation in this area also occurred in heavy rains, but more deeply due to the rapid movement and redirection of water in depth by tree roots. This process was also responsible for the higher subsurface flows found in the forest, that is, the greater aggregation of the soil, the existence of interconnected macropores, ducts and roots facilitate the transmission of water in depth. Associated with the high rainfall and high relative humidity, these vegetation favoured the formation of saturation zones and increased pore pressures of the water, causing landslides on lands between 0.5 m and 2.0 m. The results of hydraulic conductivity show that the difference (lateritic = 10-4 cm/s; saprolitic = 10-5 cm/s) between the layers of the soil can generate zones of hydraulic discontinuity in extreme rainfall events, which would justify the predominance of shallow translational landslides at these same depths.

Estimating the effect of shallow groundwater on diurnal heat transport in a vadose zone

NASA Astrophysics Data System (ADS)

Jiang, Jianmei; Zhao, Lin; Zhai, Zhe

2016-09-01

The influence of shallow groundwater on the diurnal heat transport of the soil profile was analyzed using a soil sensor automatic monitoring system that continuously measures temperature and water content of soil profiles to simulate heat transport based on the Philip and de Vries (PDV) model. Three experiments were conducted to measure soil properties at depths of 5 cm, 10 cm, 20 cm, and 30 cm when groundwater tables reached 10 cm, 30 cm, and 60 cm (Experiments I, II, and III). Results show that both the soil temperature near shallow groundwater and the soil water content were effectively simulated by the PDV model. The root mean square errors of the temperature at depths of 5 cm, 10 cm, and 20 cm were 1.018°C, 0.909°C, and 0.255°C, respectively. The total heat flux generated the convergent and divergent planes in space-time fields with valley values of-161.5W•m-2 at 7:30 and-234.6W•m-2 at 11:10 in Experiments II and III, respectively. The diurnal heat transport of the saturated soil occurred in five stages, while that of saturated-unsaturated and unsaturated soil profiles occurred in four stages because high moisture content led to high thermal conductivity, which hastened the heat transport.

Contrasting water use pattern of introduced and native plants in an alpine desert ecosystem, Northeast Qinghai-Tibet Plateau, China.

PubMed

Wu, Huawu; Li, Xiao-Yan; Jiang, Zhiyun; Chen, Huiying; Zhang, Cicheng; Xiao, Xiong

2016-01-15

Plant water use patterns reflect the complex interactions between different functional types and environmental conditions in water-limited ecosystems. However, the mechanisms underlying the water use patterns of plants in the alpine desert of the Qinghai-Tibet Plateau remain poorly understood. This study investigated seasonal variations in the water sources of herbs (Carex moorcroftii, Astragalus adsurgens) and shrubs (Artemisia oxycephala, Hippophae rhamnoides) using stable oxygen-18 isotope methods. The results indicated that the native herbs (C. moorcroftii, A. adsurgens) and one of the shrubs (A. oxycephala) mainly relied on water from the shallow layer (0-30 cm) throughout the growing season, while the introduced shrub (H. rhamnoides) showed plasticity in switching between water from shallow and deep soil layers depending on soil water availability. All studied plants primarily depended on water from shallow soil layers early in the season. The differences of water use patterns between the introduced and native plants are closely linked with the range of active root zones when competing for water. Our findings will facilitate the mechanistic understanding of plant-soil-water relations in alpine desert ecosystems and provide information for screening introduced species for sand fixation. Copyright © 2015 Elsevier B.V. All rights reserved.

Paired tree and soil instrumentation: what can we learn from two instrumented sites across various gradients in a forested catchment

NASA Astrophysics Data System (ADS)

Hartsough, P. C.; Roudneva, E.; Malazian, A. I.; Meadows, M. W.; Bales, R. C.; Hopmans, J. W.

2012-12-01

Extensive instrumentation both below and above ground across a forested catchment in the Southern Sierra Critical Zone Observatory (SSCZO) within the Kings River Experimental Watershed (KREW) begins to untangle the complex relationship between precipitation, water storage and transpiration as it relates to water availability from deeper sources. The first instrumented site (CZT-1) includes a White Fir (Abies concolor) situated on a flat ridge with access to deep soil moisture. Monitoring and modeling of shallow and deep soil regions confirm that there is significant soil water available from 100-400cm as the tree exhausts water from shallower depths. A root excavation and limited drilling show roots distributed from 30-150cm with limited roots available to access deeper soil water and water stored in the saprolite. At a second instrumented site, CZT-2, a Ponderosa Pine (Pinus ponderosa) was instrumented with a similar suite of sap flow and soil sensors. The CZT-2 site is on a slight slope and is characterized by shallow soils (<90cm) with extensive cobbles and bedrock outcrops with limited access to deeper soil or saprolite water. The second site also sits in the open while the first site is more protected in a closed forest. The two sites show different responses to changes in rain and snow loading from above as well as soil drainage and water depletion from below across a wet to dry transition. They also have different thresholds for transpiration shut down both due to late season water deficit and also during winter periods where air temperatures are high enough to permit photosynthesis. Sap flux and extensive soil water content and water potential measurements around both trees as well as evapotranspiration measurements from a 50m flux tower located adjacent to the two instrumented trees, show little water limitation during wet years and only moderate water limitation during a drought year. Access to deeper water storage pools is confirmed by modeling results across the soil/tree/atmosphere continuum.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lucash, M.S.; Farnsworth, B.; Winner, W.E.

This study tests the potential for interactions between root-zone temperature and CO{sub 2} for plants which co-occur in a habitat where root-zone temperature fluctuate throughout the day. Controlled environment studies were conducted to expose desert plants to combinations of low or high root zone temperatures and low or high CO{sub 2}. Artemisia tridentata, Sitanion hystrix, and Stipa thurberiana were chosen for study to represent eastern Oregon plants that differ in their life history strategies. Seeds were planted in pots containing native soils and were grown in environmentally controlled growth chambers for three months. Growth treatments were either ambient (380 ppm)more » or high (580 ppm) CO{sub 2} concentration and high (18{degrees}C) or low (13{degrees} C) root-zone temperature. A. tridentata (a perennial shrub) was relatively unresponsive to treatments. Growth of S. hystrix and S. thurberiana (both C{sub 3} grasses) was stimulated by root-zone warming at both ambient and elevated CO{sub 2} levels. CO{sub 2} stimulated growth occurred for both grass species at low root-zone temperatures but only for S. thurberiana at high root-zone temperatures. Biomass increases from elevated CO{sub 2} were enhanced by root-zone warming indicating treatment interactions. Leaf-level photosynthesis measurements were consistent across species, but could not explain growth responses to treatments. These studies indicate that grasses may be more responsive to environmental change than co-occurring shrubs.« less

Higher species richness of octocorals in the upper mesophotic zone in Eilat (Gulf of Aqaba) compared to shallower reef zones

NASA Astrophysics Data System (ADS)

Shoham, Erez; Benayahu, Yehuda

2017-03-01

Mesophotic coral-reef ecosystems (MCEs), which comprise the light-dependent communities of corals and other organisms found at depths between 30 and 150 m, have received very little study to date. However, current technological advances, such as remotely operated vehicles and closed-circuit rebreather diving, now enable their thorough investigation. Following the reef-building stony corals, octocorals are the second most common benthic component on many shallow reefs and a major component on deep reefs, the Red Sea included. This study is the first to examine octocoral community features on upper MCEs based on species-level identification and to compare them with the shallower reef zones. The study was carried out at Eilat (Gulf of Aqaba, northern Red Sea), comparing octocoral communities at two mesophotic reefs (30-45 m) and two shallow reef zones (reef flat and upper fore-reef) by belt transects. A total of 30 octocoral species were identified, with higher species richness on the upper MCEs compared to the shallower reefs. Although the MCEs were found to host a higher number of species than the shallower reefs, both featured a similar diversity. Each reef zone revealed a unique octocoral species composition and distinct community structure, with only 16% of the species shared by both the MCEs and the shallower reefs. This study has revealed an almost exclusive dominance of zooxanthellate species at the studied upper MCE reefs, thus indicating an adequate light regime for photosynthesis there. The findings should encourage similar studies on other reefs, aimed at understanding the spatiotemporal features and ecological role of octocorals in reef ecosystems down to the deepest limit of the MCEs.

Global root zone storage capacity from satellite-based evaporation data

NASA Astrophysics Data System (ADS)

Wang-Erlandsson, Lan; Bastiaanssen, Wim; Gao, Hongkai; Jägermeyr, Jonas; Senay, Gabriel; van Dijk, Albert; Guerschman, Juan; Keys, Patrick; Gordon, Line; Savenije, Hubert

2016-04-01

We present an "earth observation-based" method for estimating root zone storage capacity - a critical, yet uncertain parameter in hydrological and land surface modelling. By assuming that vegetation optimises its root zone storage capacity to bridge critical dry periods, we were able to use state-of-the-art satellite-based evaporation data computed with independent energy balance equations to derive gridded root zone storage capacity at global scale. This approach does not require soil or vegetation information, is model independent, and is in principle scale-independent. In contrast to traditional look-up table approaches, our method captures the variability in root zone storage capacity within land cover type, including in rainforests where direct measurements of root depth otherwise are scarce. Implementing the estimated root zone storage capacity in the global hydrological model STEAM improved evaporation simulation overall, and in particular during the least evaporating months in sub-humid to humid regions with moderate to high seasonality. We find that evergreen forests are able to create a large storage to buffer for extreme droughts (with a return period of up to 60 years), in contrast to short vegetation and crops (which seem to adapt to a drought return period of about 2 years). The presented method to estimate root zone storage capacity eliminates the need for soils and rooting depth information, which could be a game-changer in global land surface modelling.

Is rhizosphere remediation sufficient for sustainable revegetation of mine tailings?

PubMed Central

Huang, Longbin; Baumgartl, Thomas; Mulligan, David

2012-01-01

Background Revegetation of mine tailings (fine-grained waste material) starts with the reconstruction of root zones, consisting of a rhizosphere horizon (mostly topsoil and/or amended tailings) and the support horizon beneath (i.e. equivalent to subsoil – mostly tailings), which must be physically and hydro-geochemically stable. This review aims to discuss key processes involved in the development of functional root zones within the context of direct revegetation of tailings and introduces a conceptual process of rehabilitating structure and function in the root zones based on a state transition model. Scope Field studies on the revegetation of tailings (from processing base metal ore and bauxite residues) are reviewed. Particular focus is given to tailings' properties that limit remediation effectiveness. Aspects of root zone reconstruction and vegetation responses are also discussed. Conclusions When reconstructing a root zone system, it is critical to restore physical structure and hydraulic functions across the whole root zone system. Only effective and holistically restored systems can control hydro-geochemical mobility of acutely and chronically toxic factors from the underlying horizon and maintain hydro-geochemical stability in the rhizosphere. Thereafter, soil biological capacity and ecological linkages (i.e. carbon and nutrient cycling) may be rehabilitated to integrate the root zones with revegetated plant communities into sustainable plant ecosystems. A conceptual framework of system transitions between the critical states of root zone development has been proposed. This will illustrate the rehabilitation process in root zone reconstruction and development for direct revegetation with sustainable plant communities. Sustainable phytostabilization of tailings requires the systematic consideration of hydro-geochemical interactions between the rhizosphere and the underlying supporting horizon. It further requires effective remediation strategies to develop hydro-geochemically stable and biologically functional root zones, which can facilitate the recovery of the microbial community and ecological linkages with revegetated plant communities. PMID:22648878

The evolution of root-zone moisture capacities after deforestation: a step towards hydrological predictions under change?

NASA Astrophysics Data System (ADS)

Nijzink, Remko; Hutton, Christopher; Pechlivanidis, Ilias; Capell, René; Arheimer, Berit; Freer, Jim; Han, Dawei; Wagener, Thorsten; McGuire, Kevin; Savenije, Hubert; Hrachowitz, Markus

2016-12-01

The core component of many hydrological systems, the moisture storage capacity available to vegetation, is impossible to observe directly at the catchment scale and is typically treated as a calibration parameter or obtained from a priori available soil characteristics combined with estimates of rooting depth. Often this parameter is considered to remain constant in time. Using long-term data (30-40 years) from three experimental catchments that underwent significant land cover change, we tested the hypotheses that: (1) the root-zone storage capacity significantly changes after deforestation, (2) changes in the root-zone storage capacity can to a large extent explain post-treatment changes to the hydrological regimes and that (3) a time-dynamic formulation of the root-zone storage can improve the performance of a hydrological model.A recently introduced method to estimate catchment-scale root-zone storage capacities based on climate data (i.e. observed rainfall and an estimate of transpiration) was used to reproduce the temporal evolution of root-zone storage capacity under change. Briefly, the maximum deficit that arises from the difference between cumulative daily precipitation and transpiration can be considered as a proxy for root-zone storage capacity. This value was compared to the value obtained from four different conceptual hydrological models that were calibrated for consecutive 2-year windows.It was found that water-balance-derived root-zone storage capacities were similar to the values obtained from calibration of the hydrological models. A sharp decline in root-zone storage capacity was observed after deforestation, followed by a gradual recovery, for two of the three catchments. Trend analysis suggested hydrological recovery periods between 5 and 13 years after deforestation. In a proof-of-concept analysis, one of the hydrological models was adapted to allow dynamically changing root-zone storage capacities, following the observed changes due to deforestation. Although the overall performance of the modified model did not considerably change, in 51 % of all the evaluated hydrological signatures, considering all three catchments, improvements were observed when adding a time-variant representation of the root-zone storage to the model.In summary, it is shown that root-zone moisture storage capacities can be highly affected by deforestation and climatic influences and that a simple method exclusively based on climate data can not only provide robust, catchment-scale estimates of this critical parameter, but also reflect its time-dynamic behaviour after deforestation.

Shallow landsliding, root reinforcement, and the spatial distribution of trees in the Oregon Coast Range

USGS Publications Warehouse

Roering, J.J.; Schmidt, K.M.; Stock, J.D.; Dietrich, W.E.; Montgomery, D.R.

2003-01-01

The influence of root reinforcement on shallow landsliding has been well established through mechanistic and empirical studies, yet few studies have examined how local vegetative patterns influence slope stability. Because root networks spread outward from trees, the species, size, and spacing of trees should influence the spatial distribution of root strength. We documented the distribution and characteristics of trees adjacent to 32 shallow landslides that occurred during 1996 in the Oregon Coast Range. Although broadly classified as a conifer-dominated forest, we observed sparse coniferous and abundant hardwood trees near landslide scars in an industrial forest (Mapleton) that experienced widespread burning in the 19th century. In industrial forests that were burned, selectively harvested, and not replanted (Elliott State Forest), swordfern was ubiquitous near landslides, and we observed similar numbers of live conifer and hardwood trees proximal to landslide scarps. We demonstrate that root strength quantified in landslide scarps and soil pits correlates with a geometry-based index of root network contribution derived from mapping the size, species, condition, and spacing of local trees, indicating that root strength can be predicted by mapping the distribution and characteristics of trees on potentially unstable slopes. In our study sites, landslides tend to occur in areas of reduced root strength, suggesting that to make site-specific predictions of landslide occurrence slope stability analyses must account for the diversity and distribution of vegetation in potentially unstable terrain.

Joint Local/Teleseismic Tomographic Inversion in Taiwan Using TAIGER and Other Data

NASA Astrophysics Data System (ADS)

Lee, E.; Wu, F. T.; Huang, B.; Liang, W.; Wang, C.; Rawlinson, N.; Okaya, D. A.

2008-12-01

Taiwan, one of the most active orogenic belts, is at the intersection of two subduction zones. In southern Taiwan, the South China Sea Slab (SCSS), part of Eurasian Plate (EP), subducts beneath the Luzon arc along the Manila trench. In northern Taiwan, the Philippine Sea Plate (PSP) subducts beneath the Ryukyu arc along the Ryukyu trench. The thin skinned model and lithospheric deformation model have been proposed to explain the formation of orogeny. To distinguish between these two geodynamically possible processes, imaging of the deep structures below Taiwan is necessary. In this study, explosion data, local/regional earthquakes and teleseisms are used to invert the velocity structures of Taiwan from surface to about 150 km. Temporary passive broadband (on land and at the ocean bottom), active sources array datasets of the TAIGER (TAiwan Integrated GEodynamics Research) project and permanent array datasets of the BATS (Broadband Array in Taiwan for Seismology) and CWB (Central Weather Bureau) are used in this study. FMTOMO (fast marching tomography) of Rawlinson et al. (2006) is employed to invert the 3D P-wavespeed beneath Taiwan. The derived velocity perturbations dVp (dVp= Vfinal-Vinital) are clearly related to geology and tectonics. At shallow depth (< 10km), dVp >0 under the Central Range (Pre-Tertiary metamorphic rocks) and dVp < 0 under the Foothills (Pliocene sedimentary). Below a depth about 20 km, the placement of the high and low anomalies is reversed, i.e., dVp>0 under the Foothills and dVp<0 under the Central Range; the low velocity core of the Central Ranges extend down to about 50 km, forming the mountain root. A steeply dipping high velocity zone lies under the thickening 'mountain root' in central Taiwan. In southern Taiwan, the high velocity zone dips eastward coinciding with the Benioff Zone. The geometry of the high velocity zones in the upper mantle are key to understanding the Taiwan orogeny.

Isotope investigation on groundwater recharge and dynamics in shallow and deep alluvial aquifers of southwest Punjab.

PubMed

Keesari, Tirumalesh; Sharma, Diana A; Rishi, Madhuri S; Pant, Diksha; Mohokar, Hemant V; Jaryal, Ajay Kumar; Sinha, U K

2017-11-01

Groundwater samples collected from the alluvial aquifers of southwest Punjab, both shallow and deep zones were measured for environmental tritium ( 3 H) and stable isotopes ( 2 H and 18 O) to evaluate the source of recharge and aquifer dynamics. The shallow groundwater shows wide variation in isotopic signature (δ 18 O: -11.3 to -5.0‰) reflecting multiple sources of recharge. The average isotopic signature of shallow groundwaters (δ 18 O: -6.73 ± 1.03‰) is similar to that of local precipitation (-6.98 ± 1.66‰) indicating local precipitation contributes to a large extent compared to other sources. Other sources have isotopically distinct signatures due to either high altitude recharge (canal sources) or evaporative enrichment (irrigation return flow). Deep groundwater shows relatively depleted isotopic signature (δ 18 O: -8.6‰) and doesn't show any evaporation effect as compared to shallow zone indicating recharge from precipitation occurring at relatively higher altitudes. Environmental tritium indicates that both shallow ( 3 H: 5 - 10 T.U.) and deeper zone ( 3 H: 1.5 - 2.5 T.U.) groundwaters are modern. In general the inter-aquifer connections seem to be unlikely except a few places. Environmental isotope data suggests that shallow groundwater is dynamic, local and prone to changes in land use patterns while deep zone water is derived from distant sources, less dynamic and not impacted by surface manifestations. A conceptual groundwater flow diagram is presented. Copyright © 2017 Elsevier Ltd. All rights reserved.

A new method of fully three dimensional analysis of stress field in the soil layer of a soil-mantled hillslope

NASA Astrophysics Data System (ADS)

Wu, Y. H.; Nakakita, E.

2017-12-01

Hillslope stability is highly related to stress equilibrium near the top surface of soil-mantled hillslopes. Stress field in a hillslope can also be significantly altered by variable groundwater motion under the rainfall influence as well as by different vegetation above and below the slope. The topographic irregularity, biological effects from vegetation and variable rainfall patterns couple with others to make the prediction of shallow landslide complicated and difficult. In an increasing tendency of extreme rainfall, the mountainous area in Japan has suffered more and more shallow landslides. To better assess shallow landslide hazards, we would like to develop a new mechanically-based method to estimate the fully three-dimensional stress field in hillslopes. The surface soil-layer of hillslope is modelled as a poroelastic medium, and the tree surcharge on the slope surface is considered as a boundary input of stress forcing. The modelling of groundwater motion is involved to alter effective stress state in the soil layer, and the tree root-reinforcement estimated by allometric equations is taken into account for influencing the soil strength. The Mohr-Coulomb failure theory is then used for locating possible yielding surfaces, or says for identifying failure zones. This model is implemented by using the finite element method. Finally, we performed a case study of the real event of massive shallow landslides occurred in Hiroshima in August, 2014. The result shows good agreement with the field condition.

Groundwater controls on vegetation composition and patterning in mountain meadows

NASA Astrophysics Data System (ADS)

Lowry, Christopher S.; Loheide, Steven P., II; Moore, Courtney E.; Lundquist, Jessica D.

2011-10-01

Mountain meadows are groundwater-dependent ecosystems that are hot spots of biodiversity and productivity. In the Sierra Nevada mountains of California, these ecosystems rely on shallow groundwater to support their vegetation communities during the dry summer growing season in the region's Mediterranean montane climate. Vegetation composition in this environment is influenced by both (1) oxygen stress that occurs when portions of the root zone are saturated and anaerobic conditions limit root respiration and (2) water stress that occurs when the water table drops and the root zone becomes water limited. A spatially distributed watershed model that explicitly accounts for snowmelt processes was linked to a fine-resolution groundwater flow model of Tuolumne Meadows in Yosemite National Park, California, to simulate water table dynamics. This linked hydrologic model was calibrated to observations from a well observation network for 2006-2009. A vegetation survey was also conducted at the site in which the three dominant species were identified at more than 200 plots distributed across the meadow. Nonparametric multiplicative regression was performed to create and select the best models for predicting vegetation dominance on the basis of the simulated hydrologic regime. The hydrologic niches of three vegetation types representing wet, moist, and dry meadow vegetation communities were found to be best described using both (1) a sum exceedance value calculated as the integral of water table position above a depth threshold of oxygen stress and (2) a sum exceedance value calculated as the integral of water table position below a depth threshold of water stress. This linked hydrologic and vegetative modeling framework advances our ability to predict the propagation of human-induced climatic and land use or land cover changes through the hydrologic system to the ecosystem. The hydroecologic functioning of meadows provides an example of the extent to which cascading hydrologic processes at watershed, hillslope, and riparian zones and within channels are reflected in the composition and distribution of riparian vegetation.

Nutrient concentrations within and below root zones from applied chicken manure in selected Hawaiian soils.

PubMed

Ahmad, Amjad A; Fares, Ali; Abbas, Farhat; Deenik, Jonathan L

2009-11-01

The objective of this study was to evaluate the effects of chicken manure (CM) application rates on nutrient concentrations within and below the root zone of sweet corn (Zea mays L. subsp. mays) under Hawaiian conditions. The research was conducted in leeward (Poamoho) and windward (Waimanalo) areas of Oahu, Hawaii, where contrasts exist in both climatic and soil conditions. Suction cup were used to collect soil solutions from 30 and 60 cm depths. Soil solutions were collected six times during the growing season at each location and analyzed for different nutrients (N, P, K, Ca, Mg, Na, Fe, Mn, Zn, and Cu), nitrate-nitrogen (NO(3)-N), ammonium-nitrogen (NH(4)-N), electrical conductivity (EC), and pH. Analysis showed that CM rates significantly affected the concentration of macro-nutrients below the root zone at Poamoho and within the root zone at Waimanalo. In general, nutrient concentration increased with the increasing rates of CM application. There was a significant effect of CM on micro-nutrients except below the root zone at Poamoho. CM significantly affected NO(3)-N concentration within the root zone for 15, 60 days after planting (DAP) at Poamoho, and 16, 28 DAP at Waimanalo. The effect was also significant on total nitrogen (N) concentration in the root zone across the two growing seasons at Waimanalo. There was a highly significant correlation between total N and NO(3)-N, and EC within and below the root zone.

Developmental morphology of cover crop species exhibit contrasting behaviour to changes in soil bulk density, revealed by X-ray computed tomography

PubMed Central

Burr-Hersey, Jasmine E.; Mooney, Sacha J.; Bengough, A. Glyn; Mairhofer, Stefan

2017-01-01

Plant roots growing through soil typically encounter considerable structural heterogeneity, and local variations in soil dry bulk density. The way the in situ architecture of root systems of different species respond to such heterogeneity is poorly understood due to challenges in visualising roots growing in soil. The objective of this study was to visualise and quantify the impact of abrupt changes in soil bulk density on the roots of three cover crop species with contrasting inherent root morphologies, viz. tillage radish (Raphanus sativus), vetch (Vicia sativa) and black oat (Avena strigosa). The species were grown in soil columns containing a two-layer compaction treatment featuring a 1.2 g cm-3 (uncompacted) zone overlaying a 1.4 g cm-3 (compacted) zone. Three-dimensional visualisations of the root architecture were generated via X-ray computed tomography, and an automated root-segmentation imaging algorithm. Three classes of behaviour were manifest as a result of roots encountering the compacted interface, directly related to the species. For radish, there was switch from a single tap-root to multiple perpendicular roots which penetrated the compacted zone, whilst for vetch primary roots were diverted more horizontally with limited lateral growth at less acute angles. Black oat roots penetrated the compacted zone with no apparent deviation. Smaller root volume, surface area and lateral growth were consistently observed in the compacted zone in comparison to the uncompacted zone across all species. The rapid transition in soil bulk density had a large effect on root morphology that differed greatly between species, with major implications for how these cover crops will modify and interact with soil structure. PMID:28753645

Developmental morphology of cover crop species exhibit contrasting behaviour to changes in soil bulk density, revealed by X-ray computed tomography.

PubMed

Burr-Hersey, Jasmine E; Mooney, Sacha J; Bengough, A Glyn; Mairhofer, Stefan; Ritz, Karl

2017-01-01

Plant roots growing through soil typically encounter considerable structural heterogeneity, and local variations in soil dry bulk density. The way the in situ architecture of root systems of different species respond to such heterogeneity is poorly understood due to challenges in visualising roots growing in soil. The objective of this study was to visualise and quantify the impact of abrupt changes in soil bulk density on the roots of three cover crop species with contrasting inherent root morphologies, viz. tillage radish (Raphanus sativus), vetch (Vicia sativa) and black oat (Avena strigosa). The species were grown in soil columns containing a two-layer compaction treatment featuring a 1.2 g cm-3 (uncompacted) zone overlaying a 1.4 g cm-3 (compacted) zone. Three-dimensional visualisations of the root architecture were generated via X-ray computed tomography, and an automated root-segmentation imaging algorithm. Three classes of behaviour were manifest as a result of roots encountering the compacted interface, directly related to the species. For radish, there was switch from a single tap-root to multiple perpendicular roots which penetrated the compacted zone, whilst for vetch primary roots were diverted more horizontally with limited lateral growth at less acute angles. Black oat roots penetrated the compacted zone with no apparent deviation. Smaller root volume, surface area and lateral growth were consistently observed in the compacted zone in comparison to the uncompacted zone across all species. The rapid transition in soil bulk density had a large effect on root morphology that differed greatly between species, with major implications for how these cover crops will modify and interact with soil structure.

Long-distance abscisic acid signalling under different vertical soil moisture gradients depends on bulk root water potential and average soil water content in the root zone.

PubMed

Puértolas, Jaime; Alcobendas, Rosalía; Alarcón, Juan J; Dodd, Ian C

2013-08-01

To determine how root-to-shoot abscisic acid (ABA) signalling is regulated by vertical soil moisture gradients, root ABA concentration ([ABA](root)), the fraction of root water uptake from, and root water potential of different parts of the root zone, along with bulk root water potential, were measured to test various predictive models of root xylem ABA concentration [RX-ABA](sap). Beans (Phaseolus vulgaris L. cv. Nassau) were grown in soil columns and received different irrigation treatments (top and basal watering, and withholding water for varying lengths of time) to induce different vertical soil moisture gradients. Root water uptake was measured at four positions within the column by continuously recording volumetric soil water content (θv). Average θv was inversely related to bulk root water potential (Ψ(root)). In turn, Ψ(root) was correlated with both average [ABA](root) and [RX-ABA](sap). Despite large gradients in θv, [ABA](root) and root water potential was homogenous within the root zone. Consequently, unlike some split-root studies, root water uptake fraction from layers with different soil moisture did not influence xylem sap (ABA). This suggests two different patterns of ABA signalling, depending on how soil moisture heterogeneity is distributed within the root zone, which might have implications for implementing water-saving irrigation techniques. © 2013 John Wiley & Sons Ltd.

Identification of runoff formation with two dyes in a mid-latitude mountain headwater

NASA Astrophysics Data System (ADS)

Vlček, Lukáš; Falátková, Kristýna; Schneider, Philipp

2017-06-01

Subsurface flow in peat bog areas and its role in the hydrologic cycle has garnered increased attention as water scarcity and floods have increased due to a changing climate. In order to further probe the mechanisms in peat bog areas and contextualize them at the catchment scale, this experimental study identifies runoff formation at two opposite hillslopes in a peaty mountain headwater; a slope with organic peat soils and a shallow phreatic zone (0.5 m below surface), and a slope with mineral Podzol soils and no detectable groundwater (> 2 m below surface). Similarities and differences in infiltration, percolation and preferential flow paths between both hillslopes could be identified by sprinkling experiments with Brilliant Blue and Fluorescein sodium. To our knowledge, this is the first time these two dyes have been compared in their ability to stain preferential flow paths in soils. Dye-stained soil profiles within and downstream of the sprinkling areas were excavated parallel (lateral profiles) and perpendicular (frontal profiles) to the slopes' gradients. That way preferential flow patterns in the soil could be clearly identified. The results show that biomat flow, shallow subsurface flow in the organic topsoil layer, occurred at both hillslopes; however, at the peat bog hillslope it was significantly more prominent. The dye solutions infiltrated into the soil and continued either as lateral subsurface pipe flow in the case of the peat bog, or percolated vertically towards the bedrock in the case of the Podzol. This study provides evidence that subsurface pipe flow, lateral preferential flow along decomposed tree roots or logs in the unsaturated zone, is a major runoff formation process at the peat bog hillslope and in the adjacent riparian zone.

Global root zone storage capacity from satellite-based evaporation

NASA Astrophysics Data System (ADS)

Wang-Erlandsson, Lan; Bastiaanssen, Wim G. M.; Gao, Hongkai; Jägermeyr, Jonas; Senay, Gabriel B.; van Dijk, Albert I. J. M.; Guerschman, Juan P.; Keys, Patrick W.; Gordon, Line J.; Savenije, Hubert H. G.

2016-04-01

This study presents an "Earth observation-based" method for estimating root zone storage capacity - a critical, yet uncertain parameter in hydrological and land surface modelling. By assuming that vegetation optimises its root zone storage capacity to bridge critical dry periods, we were able to use state-of-the-art satellite-based evaporation data computed with independent energy balance equations to derive gridded root zone storage capacity at global scale. This approach does not require soil or vegetation information, is model independent, and is in principle scale independent. In contrast to a traditional look-up table approach, our method captures the variability in root zone storage capacity within land cover types, including in rainforests where direct measurements of root depths otherwise are scarce. Implementing the estimated root zone storage capacity in the global hydrological model STEAM (Simple Terrestrial Evaporation to Atmosphere Model) improved evaporation simulation overall, and in particular during the least evaporating months in sub-humid to humid regions with moderate to high seasonality. Our results suggest that several forest types are able to create a large storage to buffer for severe droughts (with a very long return period), in contrast to, for example, savannahs and woody savannahs (medium length return period), as well as grasslands, shrublands, and croplands (very short return period). The presented method to estimate root zone storage capacity eliminates the need for poor resolution soil and rooting depth data that form a limitation for achieving progress in the global land surface modelling community.

A Physically-Based and Distributed Tool for Modeling the Hydrological and Mechanical Processes of Shallow Landslides

NASA Astrophysics Data System (ADS)

Arnone, E.; Noto, L. V.; Dialynas, Y. G.; Caracciolo, D.; Bras, R. L.

2015-12-01

This work presents the capabilities of a model, i.e. the tRIBS-VEGGIE-Landslide, in two different versions, i.e. developed within a probabilistic framework and coupled with a root cohesion module. The probabilistic model treats geotechnical and soil retention curve parameters as random variables across the basin and estimates theoretical probability distributions of slope stability and the associated "factor of safety" commonly used to describe the occurrence of shallow landslides. The derived distributions are used to obtain the spatio-temporal dynamics of probability of failure, conditioned on soil moisture dynamics at each watershed location. The framework has been tested in the Luquillo Experimental Forest (Puerto Rico) where shallow landslides are common. In particular, the methodology was used to evaluate how the spatial and temporal patterns of precipitation, whose variability is significant over the basin, affect the distribution of probability of failure. Another version of the model accounts for the additional cohesion exerted by vegetation roots. The approach is to use the Fiber Bundle Model (FBM) framework that allows for the evaluation of the root strength as a function of the stress-strain relationships of bundles of fibers. The model requires the knowledge of the root architecture to evaluate the additional reinforcement from each root diameter class. The root architecture is represented with a branching topology model based on Leonardo's rule. The methodology has been tested on a simple case study to explore the role of both hydrological and mechanical root effects. Results demonstrate that the effects of root water uptake can at times be more significant than the mechanical reinforcement; and that the additional resistance provided by roots depends heavily on the vegetation root structure and length.

Nutrient Enrichment in Estuaries from Discharge of Shallow Ground Water, Mt. Desert Island, Maine

USGS Publications Warehouse

Culbertson, Charles W.; Huntington, Thomas G.; Caldwell, James M.

2007-01-01

Nutrient enrichment from atmospheric deposition, agricultural activities, wildlife, and domestic sources is a concern at Acadia National Park because of the potential problem of water-quality degradation and eutrophication in its estuaries. Water-quality degradation has been observed at the Park?s Bass Harbor Marsh estuary but not in Northeast Creek estuary. Previous studies at Acadia National Park have estimated nutrient inputs to estuaries from atmospheric deposition and surface-water runoff, but the importance of shallow ground water that may contain nutrients derived from domestic or other sources is unknown. Northeast Creek and Bass Harbor Marsh estuaries were studied to (1) identify shallow ground-water seeps, (2) assess the chemistry of the water discharged from selected seeps, and (3) assess the chemistry of ground water in shallow ground-water hyporheic zones. The hyporheic zone is defined here as the region beneath and lateral to a stream bed, where there is mixing of shallow ground water and surface water. This study also provides baseline chemical data for ground water in selected bedrock monitoring wells and domestic wells on Mt. Desert Island. Water samples were analyzed for concentrations of nutrients, wastewater compounds, dissolved organic carbon, pH, dissolved oxygen, temperature and specific conductance. Samples from bedrock monitoring wells also were analyzed for alkalinity, major cations and anions, and trace metals. Shallow ground-water seeps to Northeast Creek and Bass Harbor Marsh estuaries at Acadia National Park were identified and georeferenced using aerial infrared digital imagery. Monitoring included the deployment of continuously recording temperature and specific conductance sensors in the seep discharge zone to access marine or freshwater signatures related to tidal flooding, gradient-driven shallow ground-water flow, or shallow subsurface flow related to precipitation events. Many potential shallow ground-water discharge zones were identified from aerial thermal imagery during flights in May and December 2003 in both estuaries. The occurrence of ground-water seeps was confirmed using continuous and discrete measurements of temperature and specific conductance in selected seeps and in the adjacent estuaries that showed salinity anomalies reflecting the input of freshwater in these complex tidal systems. Analysis of water samples from shallow ground water in the hyporheic zone and from ground-water seeps indicated the presence of elevated concentrations of dissolved nitrogen, compared to concentrations in the adjacent estuaries and surface-water tributaries draining into the estuaries. These findings indicate that shallow ground water is a source of dissolved nitrogen to the estuaries. Orthophosphate levels were low in ground water in the hyporheic zone in Bass Harbor Marsh, but somewhat higher in one hyporheic-zone well in Northeast Creek compared with the concentrations in both estuaries that were at or below detection limits. Household wastewater-related compounds were not detected in ground water in the hyporheic zone. Analysis of water samples from domestic and bedrock monitoring wells developed in fractured bedrock indicated that concentrations of dissolved nitrogen, phosphorus, and household wastewater-related compounds were typically at or below detection, suggesting that the aquifers sampled had not been contaminated from septic sources.

In-situ atrazine biodegradation dynamics in wheat (Triticum) crops under variable hydrologic regime.

PubMed

la Cecilia, Daniele; Maggi, Federico

2017-08-01

A comprehensive biodegradation reaction network of atrazine (ATZ) and its 18 byproducts was coupled to the nitrogen cycle and integrated in a computational solver to assess the in-situ biodegradation effectiveness and leaching along a 5m deep soil cultivated with wheat in West Wyalong, New South Wales, Australia. Biodegradation removed 97.7% of 2kg/ha ATZ yearly applications in the root zone, but removal substantially decreased at increasing depths; dechlorination removed 79% of ATZ in aerobic conditions and 18% in anaerobic conditions, whereas deethylation and oxidation removed only 0.11% and 0.15% of ATZ, respectively. The residual Cl mass fraction in ATZ and 4 byproducts was 2.4% of the applied mass. ATZ half-life ranged from 150 to 247days in the soil surface. ATZ reached 5m soil depth within 200years and its concentration increased from 1×10 -6 to 4×10 -6 mg/kg dry-soil over time. The correlation between ATZ specific biomass degradation affinity Φ 0 and half-life t 1/2 , although relatively uncertain for both hydrolyzing and oxidizing bacteria, suggested that microorganisms with high Φ 0 led to low ATZ t 1/2 . Greater ATZ applications were balanced by small nonlinear increments of ATZ biodegraded fraction within the root zone and therefore less ATZ leached into the shallow aquifer. Copyright © 2017 Elsevier B.V. All rights reserved.

In-situ atrazine biodegradation dynamics in wheat (Triticum) crops under variable hydrologic regime

NASA Astrophysics Data System (ADS)

la Cecilia, Daniele; Maggi, Federico

2017-08-01

A comprehensive biodegradation reaction network of atrazine (ATZ) and its 18 byproducts was coupled to the nitrogen cycle and integrated in a computational solver to assess the in-situ biodegradation effectiveness and leaching along a 5 m deep soil cultivated with wheat in West Wyalong, New South Wales, Australia. Biodegradation removed 97.7% of 2 kg/ha ATZ yearly applications in the root zone, but removal substantially decreased at increasing depths; dechlorination removed 79% of ATZ in aerobic conditions and 18% in anaerobic conditions, whereas deethylation and oxidation removed only 0.11% and 0.15% of ATZ, respectively. The residual Cl mass fraction in ATZ and 4 byproducts was 2.4% of the applied mass. ATZ half-life ranged from 150 to 247 days in the soil surface. ATZ reached 5 m soil depth within 200 years and its concentration increased from 1 ×10-6 to 4 ×10-6 mg/kgdry-soil over time. The correlation between ATZ specific biomass degradation affinity Φ0 and half-life t1/2, although relatively uncertain for both hydrolyzing and oxidizing bacteria, suggested that microorganisms with high Φ0 led to low ATZ t1/2. Greater ATZ applications were balanced by small nonlinear increments of ATZ biodegraded fraction within the root zone and therefore less ATZ leached into the shallow aquifer.

Improved global simulation of groundwater-ecosystem interactions via tight coupling of a dynamic global ecosystem model and a global hydrological model

NASA Astrophysics Data System (ADS)

Braakhekke, Maarten; Rebel, Karin; Dekker, Stefan; Smith, Benjamin; Sutanudjaja, Edwin; van Beek, Rens; van Kampenhout, Leo; Wassen, Martin

2017-04-01

In up to 30% of the global land surface ecosystems are potentially influenced by the presence of a shallow groundwater table. In these regions upward water flux by capillary rise increases soil moisture availability in the root zone, which has a strong effect on evapotranspiration, vegetation dynamics, and fluxes of carbon and nitrogen. Most global hydrological models and several land surface models simulate groundwater table dynamics and their effects on land surface processes. However, these models typically have relatively simplistic representation of vegetation and do not consider changes in vegetation type and structure. Dynamic global vegetation models (DGVMs), describe land surface from an ecological perspective, combining detailed description of vegetation dynamics and structure, and biogeochemical processes and are thus more appropriate to simulate the ecological and biogeochemical effects of groundwater interactions. However, currently virtually all DGVMs ignore these effects, assuming that water tables are too deep to affect soil moisture in the root zone. We have implemented a tight coupling between the dynamic global ecosystem model LPJ-GUESS and the global hydrological model PCR-GLOBWB, which explicitly simulates groundwater dynamics. This coupled model allows us to explicitly account for groundwater effects on terrestrial ecosystem processes at global scale. Results of global simulations indicate that groundwater strongly influences fluxes of water, carbon and nitrogen, in many regions, adding up to a considerable effect at the global scale.

Effect of Sediments on Rupture Dynamics of Shallow Subduction Zone Earthquakes and Tsunami Generation

NASA Astrophysics Data System (ADS)

Ma, S.

2011-12-01

Low-velocity fault zones have long been recognized for crustal earthquakes by using fault-zone trapped waves and geodetic observations on land. However, the most pronounced low-velocity fault zones are probably in the subduction zones where sediments on the seafloor are being continuously subducted. In this study I focus on shallow subduction zone earthquakes; these earthquakes pose a serious threat to human society in their ability in generating large tsunamis. Numerous observations indicate that these earthquakes have unusually long rupture durations, low rupture velocities, and/or small stress drops near the trench. However, the underlying physics is unclear. I will use dynamic rupture simulations with a finite-element method to investigate the dynamic stress evolution on faults induced by both sediments and free surface, and its relations with rupture velocity and slip. I will also explore the effect of off-fault yielding of sediments on the rupture characteristics and seafloor deformation. As shown in Ma and Beroza (2008), the more compliant hanging wall combined with free surface greatly increases the strength drop and slip near the trench. Sediments in the subduction zone likely have a significant role in the rupture dynamics of shallow subduction zone earthquakes and tsunami generation.

Modeling Water Flux at the Base of the Rooting Zone for Soils with Varying Glacial Parent Materials

NASA Astrophysics Data System (ADS)

Naylor, S.; Ellett, K. M.; Ficklin, D. L.; Olyphant, G. A.

2013-12-01

Soils of varying glacial parent materials in the Great Lakes Region (USA) are characterized by thin unsaturated zones and widespread use of agricultural pesticides and nutrients that affect shallow groundwater. To better our understanding of the fate and transport of contaminants, improved models of water fluxes through the vadose zones of various hydrogeologic settings are warranted. Furthermore, calibrated unsaturated zone models can be coupled with watershed models, providing a means for predicting the impact of varying climate scenarios on agriculture in the region. To address these issues, a network of monitoring sites was developed in Indiana that provides continuous measurements of precipitation, potential evapotranspiration (PET), soil volumetric water content (VWC), and soil matric potential to parameterize and calibrate models. Flux at the base of the root zone is simulated using two models of varying complexity: 1) the HYDRUS model, which numerically solves the Richards equation, and 2) the soil-water-balance (SWB) model, which assumes vertical flow under a unit gradient with infiltration and evapotranspiration treated as separate, sequential processes. Soil hydraulic parameters are determined based on laboratory data, a pedo-transfer function (ROSETTA), field measurements (Guelph permeameter), and parameter optimization. Groundwater elevation data are available at three of six sites to establish the base of the unsaturated zone model domain. Initial modeling focused on the groundwater recharge season (Nov-Feb) when PET is limited and much of the annual vertical flux occurs. HYDRUS results indicate that base of root zone fluxes at a site underlain by glacial ice-contact parent materials are 48% of recharge season precipitation (VWC RMSE=8.2%), while SWB results indicate that fluxes are 43% (VWC RMSE=3.7%). Due in part to variations in surface boundary conditions, more variable fluxes were obtained for a site underlain by alluvium with the SWB model (68% of recharge season precipitation, VWC RMSE=7.0%) predicting much greater drainage than HYDRUS (38% of recharge season precipitation, VWC RMSE=6.6%). Results also show that when calculating drainage flux over the recharge period, HYDRUS is highly sensitive to model initialization using observed water content from in-situ instrumentation. Simulated recharge season drainage flux is as much as 3.5 times higher when a one-month spin-up period was performed in the HYDRUS model for the same site. SWB results are less sensitive to water content initialization, but drainage flux is 1.6 times higher at one site using the same spin-up analysis. The long-term goals of this effort are to leverage the robust calibration data set to establish optimal approaches for determining hydraulic parameters such that water fluxes in the lower vadose zone can be modeled for a wider range of geomorphic settings where calibration data are unavailable.

Soil moisture causes dynamic adjustments to root reinforcement that reduce slope stability

Treesearch

Tristram C. Hales; Chelcy F. Miniat

2017-01-01

In steep soil-mantled landscapes, the initiation of shallow landslides is strongly controlled by the distribution of vegetation, whose roots reinforce the soil. The magnitude of root reinforcement depends on the number, diameter distribution, orientation and the mechanical properties of roots that cross potential failure planes. Understanding how these...

How do soil physical conditions for crop growth vary over time under established contrasting tillage regimes?

NASA Astrophysics Data System (ADS)

Hallett, Paul; Stobart, Ron; Valentine, Tracy; George, Timothy; Morris, Nathan; Newton, Adrian; McKenzie, Blair

2014-05-01

When plant breeders develop modern cereal varieties for the sustainable intensification of agriculture, insufficient thought is given to the impact of tillage on soil physical conditions for crop production. In earlier work, we demonstrated that barley varieties that perform best in ploughed soil (the approach traditionally used for breeding trials) were not the same as those performing best under shallow non-inversion or zero-tillage. We also found that the Quantitative Trait Loci (QTL) associated with improved phosphorus uptake, and hence useful for marker assisted breeding, were not robust between different tillage regimes. The impact of the soil environment had greater impact than the genetics in GxE interactions. It is obvious that soil tillage should be considered when breeding the next generation of crops. Tillage may also have important impacts on carbon storage, but we found that despite greater soil carbon at shallow depths under non-inversion tillage, the carbon stored throughout the soil profile was not affected by tillage. Studies on soil tillage impacts to crop productivity and soil quality are often performed in one season, on single sites that have had insufficient time to develop. Our current research explores multiple sites, on different soils, with temporal measurements of soil physical conditions under contrasting tillage regimes. We use the oldest established contemporary tillage experiments in the United Kingdom, with all sites sharing ploughed and shallow (7cm) non-inversion tillage treatments. In eastern Scotland (Mid Pilmore), the site also has zero tillage and deep ploughing (40 cm) treatments, and was established 11 years ago. In east England there are two sites, both also having a deep non-inversion tillage treatment, and they were established 6 (New Farm Systems) and 8 (STAR) years ago. We measure a range of crop and soil properties at sowing, one month after sowing and post-harvest, including rapid lab based assays that allow high-throughput. Samples are taken over the rooting zone in the topsoil, plough pan and subsoil. The first year's dataset from this comprehensive project will be presented. Early data identified plough pans under shallow non-inversion tillage that will limit root growth at all sites. Aggregate stabilities vary as expected, with plough soils at shallow depth being less stable than non-inversion tillage, but greater stability in plough soils at greater depth due to incorporated organic matter. Very rapidly following cultivation, the seedbeds coalesce, resulting in a more challenging physical environment for crop growth. We are exploring the mechanisms in soil structure temporal dynamics in greater detail, including the resilience of seedbeds to structural degradation through natural weathering and the action of plants. These profound differences in soil conditions will impact the root ideotype of crops for these different conditions. This has implications for the way in which breeding and genotype selection is performed in the future. Ultimately, we aim to identify crop varieties suited to local soil conditions and management, possibly with root traits that boost yields and soil physical quality.

Analysis of changes in relative elemental growth rate patterns in the elongation zone of Arabidopsis roots upon gravistimulation

NASA Technical Reports Server (NTRS)

Mullen, J. L.; Ishikawa, H.; Evans, M. L.

1998-01-01

Although Arabidopsis is an important system for studying root physiology, the localized growth patterns of its roots have not been well defined, particularly during tropic responses. In order to characterize growth rate profiles along the apex of primary roots of Arabidopsis thaliana (L.) Heynh (ecotype Columbia) we applied small charcoal particles to the root surface and analyzed their displacement during growth using an automated video digitizer system with custom software for tracking the markers. When growing vertically, the maximum elongation rate occurred 481 +/- 50 microns back from the extreme tip of the root (tip of root cap), and the elongation zone extended back to 912 +/- 137 microns. The distal elongation zone (DEZ) has previously been described as the apical region of the elongation zone in which the relative elemental growth rate (REGR) is < or = 30% of the peak rate in the central elongation zone. By this definition, our data indicate that the basal limit of the DEZ was located 248 +/- 30 microns from the root tip. However, after gravistimulation, the growth patterns of the root changed. Within the first hour of graviresponse, the basal limit of the DEZ and the position of peak REGR shifted apically on the upper flank of the root. This was due to a combination of increased growth in the DEZ and growth inhibition in the central elongation zone. On the lower flank, the basal limit of the DEZ shifted basipetally as the REGR decreased. These factors set up the gradient of growth rate across the root, which drives curvature.

Root-zone temperature and water availability affect early root growth of planted longleaf pine

Treesearch

M.A. Sword

1995-01-01

Longleaf pine seedlings from three seed sources were exposed to three root-zone temperatures and three levels of water availability for 28 days. Root growth declined as temperature and water availability decreased. Root growth differed by seed source. Results suggest that subtle changes in the regeneration environment may influence early root growth of longleaf pine...

Simulation of the evolution of root water foraging strategies in dry and shallow soils

PubMed Central

Renton, Michael; Poot, Pieter

2014-01-01

Background and Aims The dynamic structural development of plants can be seen as a strategy for exploiting the limited resources available within their environment, and we would expect that evolution would lead to efficient strategies that reduce costs while maximizing resource acquisition. In particular, perennial species endemic to habitats with shallow soils in seasonally dry environments have been shown to have a specialized root system morphology that may enhance access to water resources in the underlying rock. This study aimed to explore these hypotheses by applying evolutionary algorithms to a functional–structural root growth model. Methods A simulation model of a plant's root system was developed, which represents the dynamics of water uptake and structural growth. The model is simple enough for evolutionary optimization to be computationally feasible, yet flexible enough to allow a range of structural development strategies to be explored. The model was combined with an evolutionary algorithm in order to investigate a case study habitat with a highly heterogeneous distribution of resources, both spatially and temporally – the situation of perennial plants occurring on shallow soils in seasonally dry environments. Evolution was simulated under two contrasting fitness criteria: (1) the ability to find wet cracks in underlying rock, and (2) maximizing above-ground biomass. Key Results The novel approach successfully resulted in the evolution of more efficient structural development strategies for both fitness criteria. Different rooting strategies evolved when different criteria were applied, and each evolved strategy made ecological sense in terms of the corresponding fitness criterion. Evolution selected for root system morphologies which matched those of real species from corresponding habitats. Conclusions Specialized root morphology with deeper rather than shallower lateral branching enhances access to water resources in underlying rock. More generally, the approach provides insights into both evolutionary processes and ecological costs and benefits of different plant growth strategies. PMID:24651371

Farm water budgets for semiarid irrigated floodplains of northern New Mexico: characterizing the surface water-groundwater interactions

NASA Astrophysics Data System (ADS)

Gutierrez, K. Y.; Fernald, A.; Ochoa, C. G.; Guldan, S. J.

2013-12-01

KEY WORDS - Hydrology, Water budget, Deep percolation, Surface water-Groundwater interactions. With the recent projections for water scarcity, water balances have become an indispensable water management tool. In irrigated floodplains, deep percolation from irrigation can represent one of the main aquifer recharge sources. A better understanding of surface water and groundwater interactions in irrigated valleys is needed for properly assessing the water balances in these systems and estimating potential aquifer recharge. We conducted a study to quantify the parameters and calculate the water budgets in three flood irrigated hay fields with relatively low, intermediate and, high water availability in northern New Mexico. We monitored different hydrologic parameters including total amount of water applied, change in soil moisture, drainage below the effective root zone, and shallow water level fluctuations in response to irrigation. Evapotranspiration was calculated from weather station data collected in-situ using the Samani-Hargreaves. Previous studies in the region have estimated deep percolation as a residual parameter of the water balance equation. In this study, we used both, the water balance method and actual measurements of deep percolation using passive lysimeters. Preliminary analyses for the three fields show a relatively rapid movement of water through the upper 50 cm of the vadose zone and a quick response of the shallow aquifer under flood irrigation. Further results from this study will provide a better understanding of surface water-groundwater interactions in flood irrigated valleys in northern New Mexico.

Statistical characteristics of seismo-ionospheric GPS TEC disturbances prior to global Mw ≥ 5.0 earthquakes (1998-2014)

NASA Astrophysics Data System (ADS)

Shah, Munawar; Jin, Shuanggen

2015-12-01

Pre-earthquake ionospheric anomalies are still challenging and unclear to obtain and understand, particularly for different earthquake magnitudes and focal depths as well as types of fault. In this paper, the seismo-ionospheric disturbances (SID) related to global earthquakes with 1492 Mw ≥ 5.0 from 1998 to 2014 are investigated using the total electron content (TEC) of GPS global ionosphere maps (GIM). Statistical analysis of 10-day TEC data before global Mw ≥ 5.0 earthquakes shows significant enhancement 5 days before an earthquake of Mw ≥ 6.0 at a 95% confidence level. Earthquakes with a focal depth of less than 60 km and Mw ≥ 6.0 are presumably the root of deviation in the ionospheric TEC because earthquake breeding zones have gigantic quantities of energy at shallower focal depths. Increased anomalous TEC is recorded in cumulative percentages beyond Mw = 5.5. Sharpness in cumulative percentages is evident in seismo-ionospheric disturbance prior to Mw ≥ 6.0 earthquakes. Seismo-ionospheric disturbances related to strike slip and thrust earthquakes are noticeable for magnitude Mw6.0-7.0 earthquakes. The relative values reveal high ratios (up to 2) and low ratios (up to -0.5) within 5 days prior to global earthquakes for positive and negative anomalies. The anomalous patterns in TEC related to earthquakes are possibly due to the coupling of high amounts of energy from earthquake breeding zones of higher magnitude and shallower focal depth.

Movement of endogenous calcium in the elongating zone of graviresponding roots of Zea mays

NASA Technical Reports Server (NTRS)

Moore, R.; Cameron, I. L.; Smith, N. K.

1989-01-01

Endogenous calcium (Ca) accumulates along the lower side of the elongating zone of horizontally oriented roots of Zea mays cv. Yellow Dent. This accumulation of Ca correlates positively with the onset of gravicurvature, and occurs in the cytoplasm, cell walls and mucilage of epidermal cells. Corresponding changes in endogenous Ca do not occur in cortical cells of the elongating zone of intact roots. These results indicate that the calcium asymmetries associated with root gravicurvature occur in the outermost layers of the root.

Predicting unsaturated zone nitrogen mass balances in agricultural settings of the United States

USGS Publications Warehouse

Nolan, Bernard T.; Puckett, Larry J.; Ma, Liwang; Green, Christopher T.; Bayless, E. Randall; Malone, Robert W.

2009-01-01

Unsaturated zone N fate and transport were evaluated at four sites to identify the predominant pathways of N cycling: an almond [Prunus dulcis (Mill.) D.A. Webb] orchard and cornfield (Zea mays L.) in the lower Merced River study basin, California; and corn–soybean [Glycine max (L.) Merr.] rotations in study basins at Maple Creek, Nebraska, and at Morgan Creek, Maryland. We used inverse modeling with a new version of the Root Zone Water Quality Model (RZWQM2) to estimate soil hydraulic and nitrogen transformation parameters throughout the unsaturated zone; previous versions were limited to 3-m depth and relied on manual calibration. The overall goal of the modeling was to derive unsaturated zone N mass balances for the four sites. RZWQM2 showed promise for deeper simulation profiles. Relative root mean square error (RRMSE) values for predicted and observed nitrate concentrations in lysimeters were 0.40 and 0.52 for California (6.5 m depth) and Nebraska (10 m), respectively, and index of agreement (d) values were 0.60 and 0.71 (d varies between 0 and 1, with higher values indicating better agreement). For the shallow simulation profile (1 m) in Maryland, RRMSE and d for nitrate were 0.22 and 0.86, respectively. Except for Nebraska, predictions of average nitrate concentration at the bottom of the simulation profile agreed reasonably well with measured concentrations in monitoring wells. The largest additions of N were predicted to come from inorganic fertilizer (153–195 kg N ha−1 yr−1 in California) and N fixation (99 and 131 kg N ha−1 yr−1 in Maryland and Nebraska, respectively). Predicted N losses occurred primarily through plant uptake (144–237 kg N ha−1 yr−1) and deep seepage out of the profile (56–102 kg N ha−1 yr−1). Large reservoirs of organic N (up to 17,500 kg N ha−1 m−1 at Nebraska) were predicted to reside in the unsaturated zone, which has implications for potential future transfer of nitrate to groundwater.

Floodplain ecohydrology: Climatic, anthropogenic, and local physical controls on partitioning of water sources to riparian trees.

PubMed

Singer, Michael Bliss; Sargeant, Christopher I; Piégay, Hervé; Riquier, Jérémie; Wilson, Rob J S; Evans, Cristina M

2014-05-01

Seasonal and annual partitioning of water within river floodplains has important implications for ecohydrologic links between the water cycle and tree growth. Climatic and hydrologic shifts alter water distribution between floodplain storage reservoirs (e.g., vadose, phreatic), affecting water availability to tree roots. Water partitioning is also dependent on the physical conditions that control tree rooting depth (e.g., gravel layers that impede root growth), the sources of contributing water, the rate of water drainage, and water residence times within particular storage reservoirs. We employ instrumental climate records alongside oxygen isotopes within tree rings and regional source waters, as well as topographic data and soil depth measurements, to infer the water sources used over several decades by two co-occurring tree species within a riparian floodplain along the Rhône River in France. We find that water partitioning to riparian trees is influenced by annual (wet versus dry years) and seasonal (spring snowmelt versus spring rainfall) fluctuations in climate. This influence depends strongly on local (tree level) conditions including floodplain surface elevation and subsurface gravel layer elevation. The latter represents the upper limit of the phreatic zone and therefore controls access to shallow groundwater. The difference between them, the thickness of the vadose zone, controls total soil moisture retention capacity. These factors thus modulate the climatic influence on tree ring isotopes. Additionally, we identified growth signatures and tree ring isotope changes associated with recent restoration of minimum streamflows in the Rhône, which made new phreatic water sources available to some trees in otherwise dry years. Water shifts due to climatic fluctuations between floodplain storage reservoirsAnthropogenic changes to hydrology directly impact water available to treesEcohydrologic approaches to integration of hydrology afford new possibilities.

Groundwater Controls on Vegetation Composition and Patterning in Mountain Meadows

NASA Astrophysics Data System (ADS)

Loheide, S. P.; Lowry, C.; Moore, C. E.; Lundquist, J. D.

2010-12-01

Mountain meadows are groundwater dependent ecosystems that are hotspots of biodiversity and productivity in the Sierra Nevada of California. Meadow vegetation relies on shallow groundwater during the region’s dry summer growing season. Vegetation composition in this environment is influenced both by 1) oxygen stress that occurs when portions of the root zone are saturated and anaerobic conditions are created that limit root respiration and 2) water stress that occurs when the water table drops and water-limited conditions are created in the root zone. A watershed model that explicitly accounts for snowmelt processes was linked to a fine resolution groundwater flow model of Tuolumne Meadows in Yosemite National Park, CA to simulated spatially distributed water table dynamics. This linked hydrologic model was calibrated to observations from a well observation network for 2006-2008, and validated using data from 2009. A vegetation survey was also conducted at the site in which the three dominant species were identified at more than 200 plots distributed across the meadow. Nonparametric multiplicative regression was performed to create and select the best models for predicting vegetation dominance based on simulated hydrologic regime. The hydrologic niche of three vegetation types representing wet, moist, and dry meadow vegetation communities was best described using both 1) a sum exceedance value calculated as the integral of water table position above a threshold of oxygen stress and 2) a sum deceedance value calculated as the integral of water table position below a threshold of water stress. This linked hydrologic and vegetative modeling framework advances our ability to predict the propagation of human-induced climatic and land-use/-cover changes through the hydrologic system to the ecosystem.

Floodplain ecohydrology: Climatic, anthropogenic, and local physical controls on partitioning of water sources to riparian trees

PubMed Central

Singer, Michael Bliss; Sargeant, Christopher I; Piégay, Hervé; Riquier, Jérémie; Wilson, Rob J S; Evans, Cristina M

2014-01-01

Seasonal and annual partitioning of water within river floodplains has important implications for ecohydrologic links between the water cycle and tree growth. Climatic and hydrologic shifts alter water distribution between floodplain storage reservoirs (e.g., vadose, phreatic), affecting water availability to tree roots. Water partitioning is also dependent on the physical conditions that control tree rooting depth (e.g., gravel layers that impede root growth), the sources of contributing water, the rate of water drainage, and water residence times within particular storage reservoirs. We employ instrumental climate records alongside oxygen isotopes within tree rings and regional source waters, as well as topographic data and soil depth measurements, to infer the water sources used over several decades by two co-occurring tree species within a riparian floodplain along the Rhône River in France. We find that water partitioning to riparian trees is influenced by annual (wet versus dry years) and seasonal (spring snowmelt versus spring rainfall) fluctuations in climate. This influence depends strongly on local (tree level) conditions including floodplain surface elevation and subsurface gravel layer elevation. The latter represents the upper limit of the phreatic zone and therefore controls access to shallow groundwater. The difference between them, the thickness of the vadose zone, controls total soil moisture retention capacity. These factors thus modulate the climatic influence on tree ring isotopes. Additionally, we identified growth signatures and tree ring isotope changes associated with recent restoration of minimum streamflows in the Rhône, which made new phreatic water sources available to some trees in otherwise dry years. Key Points Water shifts due to climatic fluctuations between floodplain storage reservoirs Anthropogenic changes to hydrology directly impact water available to trees Ecohydrologic approaches to integration of hydrology afford new possibilities PMID:25506099

Organization of cortical microtubules in graviresponding maize roots

NASA Technical Reports Server (NTRS)

Blancaflor, E. B.; Hasenstein, K. H.

1993-01-01

Immunofluorescence labeling of cortical microtubules (MTs) was used to investigate the relationship between MT arrangement and changes in growth rate of the upper and lower sides of horizontally placed roots of maize (Zea mays L. cv. Merit). Cap cells and cells of the elongation zone of roots grown vertically in light or darkness showed MT arrangements that were transverse (perpendicular) to the growth direction. Microtubules of cells basal to the elongation zone typically showed oblique orientation. Two hours after horizontal reorientation, cap cells of gravicompetent, light-grown and curving roots contained MTs parallel to the gravity vector. The MT arrangement on the upper side of the elongation zone remained transverse but the MTs of the outer four to five layers of cortical cells along the lower side of the elongation zone showed reorientation parallel to the axis of the root. The MTs of the lower epidermis retained their transverse orientation. Dark-grown roots did not curve and did not show reorientation of MTs in cells of the root cap or elongation zone. The data indicate that MT depolymerization and reorientation is correlated with reduction in growth rate, and that MT reorientation is one of the steps of growth control of graviresponding roots.

Distribution and mobility of selenium and other trace elements in shallow groundwater of the western San Joaquin Valley, California

USGS Publications Warehouse

Deverel, S.J.; Milliard, S.P.

1988-01-01

Samples of shallow groundwater that underlies much of the irrigated area in the western San Joaquin Valley, CA, were analyzed for various major ions and trace elements, including selenium. Concentrations of the major ions generally were similar for groundwater collected in the two primary geologic zones - the alluvial fan and basin trough. Selenium concentrations are significantly (α = 0.05) higher in the groundwater of the alluvial-fan zone than in that of the basin-trough zone. The concentrations of oxyanion trace elements were significantly correlated (α = 0.05) with groundwater salinity, but the correlations between selenium and salinity and between molybdenum and salinity were significantly different (α = 0.05) in the alluvial-fan geologic zone compared with those in the basin-trough geologic zone. The evidence suggests that the main factors affecting selenium concentrations in the shallow groundwater are the degree of groundwater salinity and the geologic source of the alluvial soil material.

Methyl tert‐butyl ether degradation in the unsaturated zone and the relation between MTBE in the atmosphere and shallow groundwater

USGS Publications Warehouse

Baehr, Arthur L.; Charles, Emmanuel G.; Baker, Ronald J.

2001-01-01

Atmospheric methyl tert‐butyl ether (MTBE) concentrations in southern New Jersey generally exceeded concentrations in samples taken from the unsaturated zone. A simple unsaturated zone transport model indicates that MTBE degradation can explain the attenuation with half‐lives from a few months to a couple of years. Tert‐butyl alcohol (TBA), a possible degradation product of MTBE, was detected in unsaturated‐zone samples at concentrations exceeding atmospheric levels at some sites, suggesting the possible conversion of MTBE to TBA. At sites where MTBE was detected in shallow groundwater, the concentration was typically higher than the overlying unsaturated‐zone concentration. This observation is consistent with outgassing from the aquifer and combined with the unsaturated‐zone attenuation suggests some of the MTBE detections in shallow groundwater are nonatmospheric in origin, coming from leaking tanks, road runoff, or other sources. The identification of sources of MTBE in groundwater and attenuation mechanisms through the hydrologic cycle is critical in developing an understanding of the long‐term effect of MTBE releases.

A shallow fault-zone structure illuminated by trapped waves in the Karadere-Duzce branch of the North Anatolian Fault, western Turkey

USGS Publications Warehouse

Ben-Zion, Y.; Peng, Z.; Okaya, D.; Seeber, L.; Armbruster, J.G.; Ozer, N.; Michael, A.J.; Baris, S.; Aktar, M.

2003-01-01

We discuss the subsurface structure of the Karadere-Duzce branch of the North Anatolian Fault based on analysis of a large seismic data set recorded by a local PASSCAL network in the 6 months following the Mw = 7.4 1999 Izmit earthquake. Seismograms observed at stations located in the immediate vicinity of the rupture zone show motion amplification and long-period oscillations in both P- and S-wave trains that do not exist in nearby off-fault stations. Examination of thousands of waveforms reveals that these characteristics are commonly generated by events that are well outside the fault zone. The anomalous features in fault-zone seismograms produced by events not necessarily in the fault may be referred to generally as fault-zone-related site effects. The oscillatory shear wave trains after the direct S arrival in these seismograms are analysed as trapped waves propagating in a low-velocity fault-zone layer. The time difference between the S arrival and trapped waves group does not grow systematically with increasing source-receiver separation along the fault. These observations imply that the trapping of seismic energy in the Karadere-Duzce rupture zone is generated by a shallow fault-zone layer. Traveltime analysis and synthetic waveform modelling indicate that the depth of the trapping structure is approximately 3-4 km. The synthetic waveform modelling indicates further that the shallow trapping structure has effective waveguide properties consisting of thickness of the order of 100 m, a velocity decrease relative to the surrounding rock of approximately 50 per cent and an S-wave quality factor of 10-15. The results are supported by large 2-D and 3-D parameter space studies and are compatible with recent analyses of trapped waves in a number of other faults and rupture zones. The inferred shallow trapping structure is likely to be a common structural element of fault zones and may correspond to the top part of a flower-type structure. The motion amplification associated with fault-zone-related site effects increases the seismic shaking hazard near fault-zone structures. The effect may be significant since the volume of sources capable of generating motion amplification in shallow trapping structures is large.

Apoplastic Alkalinization Is Instrumental for the Inhibition of Cell Elongation in the Arabidopsis Root by the Ethylene Precursor 1-Aminocyclopropane-1-Carboxylic Acid1[W][OA

PubMed Central

Staal, Marten; De Cnodder, Tinne; Simon, Damien; Vandenbussche, Filip; Van Der Straeten, Dominique; Verbelen, Jean-Pierre; Elzenga, Theo; Vissenberg, Kris

2011-01-01

In Arabidopsis (Arabidopsis thaliana; Columbia-0) roots, the so-called zone of cell elongation comprises two clearly different domains: the transition zone, a postmeristematic region (approximately 200–450 μm proximal of the root tip) with a low rate of elongation, and a fast elongation zone, the adjacent proximal region (450 μm away from the root tip up to the first root hair) with a high rate of elongation. In this study, the surface pH was measured in both zones using the microelectrode ion flux estimation technique. The surface pH is highest in the apical part of the transition zone and is lowest at the basal part of the fast elongation zone. Fast cell elongation is inhibited within minutes by the ethylene precursor 1-aminocyclopropane-1-carboxylic acid; concomitantly, apoplastic alkalinization occurs in the affected root zone. Fusicoccin, an activator of the plasma membrane H+-ATPase, can partially rescue this inhibition of cell elongation, whereas the inhibitor N,N′-dicyclohexylcarbodiimide does not further reduce the maximal cell length. Microelectrode ion flux estimation experiments with auxin mutants lead to the final conclusion that control of the activity state of plasma membrane H+-ATPases is one of the mechanisms by which ethylene, via auxin, affects the final cell length in the root. PMID:21282405

SMERGE: A multi-decadal root-zone soil moisture product for CONUS

NASA Astrophysics Data System (ADS)

Crow, W. T.; Dong, J.; Tobin, K. J.; Torres, R.

2017-12-01

Multi-decadal root-zone soil moisture products are of value for a range of water resource and climate applications. The NASA-funded root-zone soil moisture merging project (SMERGE) seeks to develop such products through the optimal merging of land surface model predictions with surface soil moisture retrievals acquired from multi-sensor remote sensing products. This presentation will describe the creation and validation of a daily, multi-decadal (1979-2015), vertically-integrated (both surface to 40 cm and surface to 100 cm), 0.125-degree root-zone product over the contiguous United States (CONUS). The modeling backbone of the system is based on hourly root-zone soil moisture simulations generated by the Noah model (v3.2) operating within the North American Land Data Assimilation System (NLDAS-2). Remotely-sensed surface soil moisture retrievals are taken from the multi-sensor European Space Agency Climate Change Initiative soil moisture data set (ESA CCI SM). In particular, the talk will detail: 1) the exponential smoothing approach used to convert surface ESA CCI SM retrievals into root-zone soil moisture estimates, 2) the averaging technique applied to merge (temporally-sporadic) remotely-sensed with (continuous) NLDAS-2 land surface model estimates of root-zone soil moisture into the unified SMERGE product, and 3) the validation of the SMERGE product using long-term, ground-based soil moisture datasets available within CONUS.

The role of the distal elongation zone in the response of maize roots to auxin and gravity

NASA Technical Reports Server (NTRS)

Ishikawa, H.; Evans, M. L.

1993-01-01

We used a video digitizer system to (a) measure changes in the pattern of longitudinal surface extension in primary roots of maize (Zea mays L.) upon application and withdrawal of auxin and (b) compare these patterns during gravitropism in control roots and roots pretreated with auxin. Special attention was paid to the distal elongation zone (DEZ), arbitrarily defined as the region between the meristem and the point within the elongation zone at which the rate of elongation reaches 0.3 of the peak rate. For roots in aqueous solution, the basal limit of the DEZ is about 2.5 mm behind the tip of the root cap. Auxin suppressed elongation throughout the elongation zone, but, after 1 to 3 h, elongation resumed, primarily as a result of induction of rapid elongation in the DEZ. Withdrawal of auxin during the period of strong inhibition resulted in exceptionally rapid elongation attributable to the initiation of rapid elongation in the DEZ plus recovery in the main elongation zone. Gravistimulation of auxin-inhibited roots induced rapid elongation in the DEZ along the top of the root. This resulted in rapid gravitropism even though the elongation rate of the root was zero before gravistimulation. The results indicate that cells of the DEZ differ from cells in the bulk of the elongation zone with respect to auxin sensitivity and that DEZ cells play an important role in gravitropism.

PRZM-2, A MODEL FOR PREDICTING PESTICIDE FATE IN THE CROP ROOT AND UNSATURATED SOIL ZONES: USERS MANUAL FOR RELEASE 2.0

EPA Science Inventory

PRZM-2 links two subordinate models--PRZM and VADOFT--in order to predict pesticide transport and transformation down through the crop root and unsaturated zones. RZM is a one-dimensional, finite difference model that accounts for pesticide fate in the crop root zone. his release...

Coalbed methane accumulation and dissipation patterns: A Case study of the Junggar Basin, NW China

NASA Astrophysics Data System (ADS)

Li, Xin; Fu, Xuehai; Yang, Xuesong; Ge, Yanyan; Quan, Fangkai

2018-07-01

The Junggar Basin is a potential replacement area of coalbed methane (CBM) development in China. To improve the efficiency of CBM exploration, we investigated CBM accumulation and dissipation patterns of coal profiles located in the northwestern, southern, eastern, and central Junggar Basin based on the following criteria: burial depth, hydrogeological zone, CBM origin, CBM phase, and CBM migration type. We identified four types of CBM accumulation patterns: (1) a self-sourcing CBM pattern containing adsorbed gas of biogenic origin from shallow-depth coal within a weak runoff zone; (2) an endogenic migration pattern containing adsorbed gas of thermogenic origin from the medium and deep coals within a stagnant zone; (3) an exogenic migration pattern containing adsorbed gas of thermogenic origin from deep coal within a stagnant zone; and (4) an exogenic migration pattern containing adsorbed and free gas of thermogenic origin from ultra-deep coal within a stagnant zone. We also identified two types of CBM dissipation patterns: (1) shallow-depth coal within a runoff zone with mixed origin CBM; and (2) shallow and medium-deep coal seams with mixed origin CBM. CBM migration in low-rank coals was more substantial than that adsorbed in high-rank coal. CBM in shallow coal could easily escape, in the absence of closed structures or hydrogeological seals. CBM reservoirs occurred in deep coal where oversaturated gas may accumulate. Future exploration should focus on gas-water sealing structures in shallow coalbeds. CBM that occurred in adsorbed and free phases and other unconventional natural gas dominated by free gas in the coal stratum should be co-explored and co-developed.

Glyphosate in Runoff Waters and in the Root-Zone: A Review

PubMed Central

Saunders, Lyndsay E.; Pezeshki, Reza

2015-01-01

Glyphosate is the most commonly-used herbicide in the world. The present review summarizes the discovery, prevalence, chemical and physical properties, mode of action and effects in plants, glyphosate resistance and the environmental fate of glyphosate. Numerous studies are reviewed that demonstrate that glyphosate may run off of fields where it is applied, while other studies provide evidence that plant roots can take up glyphosate. Non-target vegetation may be exposed to glyphosate in the root-zone, where it has the potential to remove aqueous glyphosate from the system. Further study on the effects of root-zone glyphosate on non-target vegetation is required to develop best management practices for land managers seeking to ameliorate the effects of root-zone glyphosate exposure. PMID:29051473

Controlled environment crop production - Hydroponic vs. lunar regolith

NASA Technical Reports Server (NTRS)

Bugbee, Bruce G.; Salisbury, Frank B.

1989-01-01

The potential of controlled environment crop production in a lunar colony is discussed. Findings on the effects of optimal root-zone and aerial environments derived as part of the NASA CELSS project at Utah State are presented. The concept of growing wheat in optimal environment is discussed. It is suggested that genetic engineering might produce the ideal wheat cultivar for CELSS (about 100 mm in height with fewer leaves). The Utah State University hydroponic system is outlined and diagrams of the system and plant container construction are provided. Ratio of plant mass to solution mass, minimum root-zone volume, maintenance, and pH control are discussed. A comparison of liquid hydrophonic systems and lunar regoliths as substrates for plant growth is provided. The physiological processes that are affected by the root-zone environment are discussed including carbon partitioning, nutrient availability, nutrient absorption zones, root-zone oxygen, plant water potential, root-produced hormones, and rhizosphere pH control.

The effect of Piriformospora indica on the root development of maize (Zea mays L.) and remediation of petroleum contaminated soil.

PubMed

Zamani, Javad; Hajabbasi, Mohammad Ali; Alaie, Ebrahim; Sepehri, Mozhgan; Leuchtmann, Adrian; Schulin, Rainer

2016-01-01

As the depth of soil petroleum contamination can vary substantially under field conditions, a rhizotron experiment was performed to investigate the influence of endophyte, P. indica, on maize growth and degradation of petroleum components in a shallow and a deep-reaching subsurface layer of a soil. For control, a treatment without soil contamination was also included. The degree in contamination and the depth to which it extended had a strong effect on the growth of the plant roots. Contaminated soil layers severely inhibited root growth thus many roots preferred to bypass the shallow contaminated layer and grow in the uncontaminated soil. While the length and branching pattern of these roots were similar to those of uncontaminated treatment. Inoculation of maize with P. indica could improve root distribution and root and shoot growth in all three contamination treatments. This inoculation also enhanced petroleum degradation in soil, especially in the treatment with deep-reaching contamination, consequently the accumulation of petroleum hydrocarbons (PAHs) in the plant tissues were increased.

Southern hemisphere craton modification by plume-lithosphere interaction

NASA Astrophysics Data System (ADS)

Hu, J.; Liu, L.; Faccenda, M.; Zhou, Q.; Fischer, K. M.; Marshak, S.; Lundstrom, C.

2017-12-01

The longevity of cratons is generally attributed to neutrally-to-positively buoyant and mechanically strong lithosphere that shields the cratonic crust from underlying mantle dynamics. Large portions of the cratonic lithospheres in South America and Africa, however, have experienced significant modification since the Mesozoic, as demonstrated by widespread Cretaceous uplift and volcanism, present-day high topography, thin crust, and the presence of seismically fast but neutrally buoyant upper-mantle anomalies. We show that these observations reflect a permanent increase in lithospheric buoyancy due to plume-triggered lithosphere deformation and deep lithospheric loss during Late Cretaceous to early Tertiary, as further evidenced by positive lithosphere residual topography, negative lithosphere residual gravity and the realignment of seismic anisotropy in the cratonic roots. Lithosphere in these regions has been thermally reestablished since then, as confirmed by its present-day low heat flow and high seismic velocities. We conclude that lowermost cratonic lithospheres is compositionally denser than the asthenospheric mantle and can be episodically removed when perturbed by underlying mantle dynamics, while the shallower buoyant lithosphere helps to stabilize cratonic crust over billions of years. We further propose that zones where lithosphere was lost would take tens of millions of years to recover thermally, but the density of the new thermal root would remain less than that of the intact root.

Comparison of evapotranspiration rates for flatwoods and ridge citrus

USGS Publications Warehouse

Jia, X.; Swancar, A.; Jacobs, J.M.; Dukes, M.D.; Morgan, K.

2007-01-01

Florida citrus groves are typically grown in two regions of the state: flatwoods and ridge. The southern flatwoods citrus area has poorly drained fine textured sands with low organic matter in the shallow root zone. Ridge citrus is located in the northern ridge citrus zone and has fine to coarse textured sands with low water-holding capacity. Two commercial citrus groves, selected from each region, were studied from 15 July 2004 to 14 July 2005. The flatwoods citrus (FC) grove had a grass cover and used drainage ditches to remove excess water from the root zone. The ridge citrus (RC) grove had a bare soil surface with weeds periodically eliminated by tillage. Citrus crop evapotranspiration (ETc) rates at the two citrus groves were measured by the eddy correlation method, and components in the energy balance were also examined and compared. The study period had higher than average rainfall, and as a result, the two locations had similar annual ETc rates (1069 and 1044 mm for RC and FC, respectively). The ETc rates were 59% (RC) and 47% (FC) of the rainfall amounts during the study period. The annual reference crop evapotranspiration (ETo) rates were 1180 mm for RC and 1419 mm for FC, estimated using the standardized reference evapotranspiration equation. The citrus crop coefficients (Kc, ratio of ETc to ET o) were different between the two locations because of differences in latitude, ground cover, and rainfall amounts. The Kc values ranged from 0.70 between December and March to 1.05 between July and November for RC, and from 0.65 between November and May to 0.85 between June and October for FC. The results are consistent with other Kc values reported from field studies on citrus in both Florida and elsewhere using these and alternate methods.

Analysis of mandibular second molars with fused roots and shallow radicular grooves by using micro-computed tomography.

PubMed

Amoroso-Silva, Pablo; De Moraes, Ivaldo Gomes; Marceliano-Alves, Marilia; Bramante, Clovis Monteiro; Zapata, Ronald Ordinola; Hungaro Duarte, Marco Antonio

2018-01-01

This study aimed to describe the morphological and morphometric aspects of fused mandibular second molars with radicular shallow grooves using micro-computed tomography (CT). Eighty-eight mandibular second molars with fused roots were scanned in a micro-CT scanner at a voxel size of 19.6 μm. After reconstruction, only molars without C-shaped roots and presenting shallow radicular grooves were selected. 30 molars were chosen for further analysis. Canal cross-sections were classified according to Fan's modified classification (C1, C2, C3, and C4) and morphometric parameters at the apical region, examination of accessory foramina and tridimensional configuration were evaluated. Three-dimensional reconstructions indicated a higher prevalence of merging type ( n = 22). According to Fan's modified classification, the C4 configuration was predominant in the 3 apical mm. Roundness median values revealed a more round-shaped canals at 3 mm (0.72) than at 2 (0.63) and 1 (0.61) mm from the apex. High values of major and minor diameters were observed in the canals of these evaluated sections. In addition, few accessory apical foramina were observed at 1 and 2 mm from the apex. The average distance between last accessory foramina and the anatomic apex was 1.17 mm. A less complex internal anatomy is found when a mandibular second molar presents fused roots with shallow radicular grooves. The merging type canal was frequently observed. Moreover, the C4 configuration was predominant at a point 3 mm from the apex and presented rounded canals, large apical diameters, and few accessory foramina. The cervical and middle thirds presented C3 and C1 canal configurations most frequently. A minor morphological complexity is found when fused mandibular second molars present shallow radicular grooves.

Neural Network-Based Retrieval of Surface and Root Zone Soil Moisture using Multi-Frequency Remotely-Sensed Observations

NASA Astrophysics Data System (ADS)

Hamed Alemohammad, Seyed; Kolassa, Jana; Prigent, Catherine; Aires, Filipe; Gentine, Pierre

2017-04-01

Knowledge of root zone soil moisture is essential in studying plant's response to different stress conditions since plant photosynthetic activity and transpiration rate are constrained by the water available through their roots. Current global root zone soil moisture estimates are based on either outputs from physical models constrained by observations, or assimilation of remotely-sensed microwave-based surface soil moisture estimates with physical model outputs. However, quality of these estimates are limited by the accuracy of the model representations of physical processes (such as radiative transfer, infiltration, percolation, and evapotranspiration) as well as errors in the estimates of the surface parameters. Additionally, statistical approaches provide an alternative efficient platform to develop root zone soil moisture retrieval algorithms from remotely-sensed observations. In this study, we present a new neural network based retrieval algorithm to estimate surface and root zone soil moisture from passive microwave observations of SMAP satellite (L-band) and AMSR2 instrument (X-band). SMAP early morning observations are ideal for surface soil moisture retrieval. AMSR2 mid-night observations are used here as an indicator of plant hydraulic properties that are related to root zone soil moisture. The combined observations from SMAP and AMSR2 together with other ancillary observations including the Solar-Induced Fluorescence (SIF) estimates from GOME-2 instrument provide necessary information to estimate surface and root zone soil moisture. The algorithm is applied to observations from the first 18 months of SMAP mission and retrievals are validated against in-situ observations and other global datasets.

Stress shadow prohibits low interseismic coupling on shallow megathrusts, even where they are frictionally unlocked

NASA Astrophysics Data System (ADS)

Lindsey, E. O.; Almeida, R. V.; Bradley, K. E.; Hubbard, J.; Sathiakumar, S.; Mallick, R.; Barbot, S.; Hill, E.

2017-12-01

The possibility of large coseismic slip on the shallow part of megathrusts represents a significant hazard, due to both tsunami risk (for subduction zones) and strong seismic shaking hazard (for subaerial megathrusts). Laboratory experiments have long suggested that the shallow part of these faults may be frictionally unlocked. However, evidence for the predicted shallow creep remains scarce, and in the case of more accessible subaerial megathrusts such as the Himalaya, appears to be virtually absent. We propose that the lack of shallow creep can be due to the presence of a stress shadow from the down-dip locked portion of the fault and therefore that interseismic geodetic observations (even at the seafloor) are typically insufficient to constrain the frictional locking on the shallow portion of the fault. We use a boundary element model with rate-strengthening friction up-dip of a locked fault segment and find that a coupling value of zero at the trench is physically unrealistic even if only a small portion of the downdip fault zone is locked. For a typical subduction zone fault geometry which is frictionally unlocked from the surface to half the maximum seismogenic depth (considered an extreme case) we find that a coupling ratio of less than 0.7 at the trench is prohibited under most conditions. For a narrower zone of up-dip unlocking, the coupling ratio should be even higher. This result highlights the difference between frictional locking (a mechanical parameter) and geodetic coupling (a kinematic parameter), and indicates that published models of coupling that assume or predict low coupling at the trench need to be reevaluated. To assess how the up-dip slip deficit is ultimately released in the case of a frictionally unlocked (but geodetically coupled) zone, we conduct a series of earthquake cycle models based on rate- and state-dependent friction in two and three dimensions. The results show that strain in the shallow part of the fault is typically released as coseismic and postseismic slip, except under conditions favoring nucleation of shallow earthquakes or SSEs. During the interseismic period, our results suggest that seafloor geodetic instruments with an uncertainty of cm/yr may not have the resolution to distinguish shallow frictional locking (with zero slip) from unlocking (with slip <30% of plate rate).

Hydraulic redistribution in a Mediterranean wild olive-pasture ecosystem: A key to tree survival and a limit to tree-patch size.

NASA Astrophysics Data System (ADS)

Curreli, Matteo; Montaldo, Nicola; Oren, Ram

2017-04-01

In water-limited environments, such as certain Mediterranean ecosystems, trees may survive prolonged droughts by uptake of water by dimorphic root system: deep roots, growing vertically, and shallower lateral roots, extending beyond the crown projection of tree clumps into zones of seasonal vegetative cover. In such ecosystems, therefore, the balance between soil water under tree canopy versus that in treeless patches plays a crucial role on sustaining tree physiological performance and surface water fluxes during drought periods. The study has been performed at the Orroli site, Sardinia (Italy). The landscape is covered by patchy vegetation: wild olives trees in clumps, herbaceous species, drying to bare soil in late spring. The climate is Mediterranean maritime with long droughts from May to October, and an historical mean yearly rain of about 670 mm concentrated in the autumn and winter months. Soil depth varies from 10 to 50 cm, with underlying fractured rocky layer of basalt. From 2003, a 10 meters micrometeorological tower equipped with eddy-covariance system has been used for measuring water and energy surface fluxes, as well as key state variables (e.g. leaf and soil skin temperature, radiations, air humidity and wind velocity). Soil moisture was measured with five soil water reflectometers (two below the olive canopy and three in patches with pasture vegetation alternating with bare soil in the dry season). Early analyses show that wild olive continue to transpire even as the soil dries and the pasture desiccates. In 2015, to estimate plant water use and in the context of soil water dynamic, 33 Granier-type thermal dissipation probes were installed for estimating sap flow in stems of wild olives trees, 40 cm aboveground, in representative trees over the eddy-covariance foot-print. The combined data of sap flow, soil water content, and eddy covariance, revealed hydraulic redistribution system through the plant and the soil at different layers, allowing to quantify the reliance of the system on different horizontally and vertically differentiated soil compartments. Results shows that during light hours, until transpiration decreases in midday, shallow roots uptake deplete the water content in the upper layer. As transpiration decreases, hydraulically redistributed water provides for both transpiration of wild olives and recharge of shallow soil layers. This buffering, attained by long recharge time of shallow soil, allow woody vegetation to remain physiologically active during very dry conditions. The hydraulically redistributed water is the main source of water for evapotranspiration in the dry summer, and its relevance increases with decreasing water availability. Thus, the spatial coverage and distribution of tree clumps is regulated by the soil water available in the inter-tree clump areas, suggesting that, if Mediterranean areas dry as predicted by IPCC, the proportion of an area occupied by tree clumps will shrink in the future, with predictable consequences to ecosystem services.

Medial meniscus anatomy-from basic science to treatment.

PubMed

Śmigielski, Robert; Becker, Roland; Zdanowicz, Urszula; Ciszek, Bogdan

2015-01-01

This paper focuses on the anatomical attachment of the medial meniscus. Detailed anatomical dissections have been performed and illustrated. Five zones can be distinguished in regard to the meniscus attachments anatomy: zone 1 (of the anterior root), zone 2 (anteromedial zone), zone 3 (the medial zone), zone 4 (the posterior zone) and the zone 5 (of the posterior root). The understanding of the meniscal anatomy is especially crucial for meniscus repair but also for correct fixation of the anterior and posterior horn of the medial meniscus.

Hydrogeology and potential effects of changes in water use, Carson Desert agricultural area, Churchill County, Nevada

USGS Publications Warehouse

Maurer, Douglas K.; Johnson, Ann K.; Welch, Alan H.

1996-01-01

Operating Criteria and Procedures for Newlands Project irrigation and Public Law 101-618 could result in reductions in surface water used for agriculture in the Carson Desert, potentially affecting ground-water supplies from shallow, intermediate, and basalt aquifers. A near-surface zone could exist at the top of the shallow aquifer near the center and eastern parts of the basin where underlying clay beds inhibit vertical flow and could limit the effects of changes in water use. In the basalt aquifer, water levels have declined about 10 feet from pre-pumping levels, and chloride and arsenic concentrations have increased. Conceptual models of the basin suggest that changes in water use in the western part of the basin would probably affect recharge to the shallow, intermediate, and basalt aquifers. Lining canals and removing land from production could cause water-level declines greater than 10 feet in the shallow aquifer up to 2 miles from lined canals. Removing land from production could cause water levels to decline from 4 to 17 feet, depending on the distribution of specific yield in the basin and the amount of water presently applied to irrigated fields. Where wells pump from a near-surface zone of the shallow aquifer, water level declines might not greatly affect pumping wells where the thickness of the zone is greatest, but could cause wells to go dry where the zone is thin.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nobel, P.S.

Soil conditions were evaluated over the rooting depths for Agave deserti and Ferocactus acanthodes from the northwestern Sonoran Desert. These succulents have mean root depths of only 10 cm when adults and even shallower distribution when seedlings, which often occur is association with the nurse plant Hilaria rigida, which also has shallow roots. Maximum soil temperatures in the 2 cm beneath bare ground were predicted to exceed 65 C, which is lethal to the roots of A. deserti and F. acanthodes, whereas H. rigida reduced the maximum surface temperatures by over 10 C, providing a microhabitat suitable for seedling establishment.more » Water Availability was defined as the soil-to-plant drop in water potential, for periods when the plants could take up water, integrated over time. Below 4 cm under bare ground, simulated Water Availability increased slightly with depth (to 35 cm) for a wet year, was fairly constant for an average year, and decreased for a dry year, indicating that the shallow rooting habit is more advantageous in drier years. Water uptake by H. rigida substantially reduced Water Availability for seedlings associated with this nurse plant. On the other hand, a 66-90% higher soil nitrogen level occurred under H. rigida, possibly representing its harvesting of this macronutrient from a wide ground area. Phosphorus was slightly less abundant in the soil under H. rigida compared with under bare ground, the potassium level was substantially higher, and the sodium level was substantially lower. All four elements varied greatly with depth, N and K decreasing and P and Na increasing. Based on the known growth responses of A. deserti and F. acanthodes to these four elements, growth was predicted to be higher for plants in soil from the shallower layers, most of the differences being due to nitrogen.« less

Technical note: Application of geophysical tools for tree root studies in forest ecosystems in complex soils

NASA Astrophysics Data System (ADS)

Rodríguez-Robles, Ulises; Arredondo, Tulio; Huber-Sannwald, Elisabeth; Alfredo Ramos-Leal, José; Yépez, Enrico A.

2017-11-01

While semiarid forests frequently colonize rocky substrates, knowledge is scarce on how roots garner resources in these extreme habitats. The Sierra San Miguelito Volcanic Complex in central Mexico exhibits shallow soils and impermeable rhyolitic-rock outcrops, which impede water movement and root placement beyond the soil matrix. However, rock fractures, exfoliated rocks and soil pockets potentially permit downward water percolation and root growth. With ground-penetrating radar (GPR) and electrical resistivity tomography (ERT), two geophysical methods advocated by Jayawickreme et al. (2014) to advance root ecology, we advanced in the method development studying root and water distribution in shallow rocky soils and rock fractures in a semiarid forest. We calibrated geophysical images with in situ root measurements, and then extrapolated root distribution over larger areas. Using GPR shielded antennas, we identified both fine and coarse pine and oak roots from 0.6 to 7.5 cm diameter at different depths into either soil or rock fractures. We also detected, trees anchoring their trunks using coarse roots underneath rock outcroppings. With ERT, we tracked monthly changes in humidity at the soil-bedrock interface, which clearly explained spatial root distribution of both tree species. Geophysical methods have enormous potential in elucidating root ecology. More interdisciplinary research could advance our understanding in belowground ecological niche functions and their role in forest ecohydrology and productivity.

A simple and cost-effective method for cable root detection and extension measurement in estuary wetland forests

NASA Astrophysics Data System (ADS)

Vovides, Alejandra G.; Marín-Castro, Beatriz; Barradas, Guadalupe; Berger, Uta; López-Portillo, Jorge

2016-12-01

This work presents the development of a low-cost method to measure the length cable roots of black mangrove (Avicennia germinans) trees to define the boundaries of central part of the anchoring root system (CPRS) without the need to fully expose root systems. The method was tested to locate and measure the length shallow woody root systems. An ultrasonic Doppler fetal monitor (UD) and a stock of steel rods (SR) were used to probe root locations without removing sediments from the surface, measure their length and estimate root-soil plate dimensions. The method was validated by comparing measurements with root lengths taken through direct measurement of excavated cable roots and from root-soil plate radii (exposed root-soil material when a tree tips over) of five up-rooted trees with stem diameters (D130) ranging between 10 and 50 cm. The mean CPRS radius estimated with the use of the Doppler was directly correlated with tree stem diameter and was not significantly different from the root-soil plate mean radius measured from up-rooted trees or from CPRS approximated by digging trenches. Our method proved to be effective and reliable in following cable roots for large amounts of trees of both black and white mangrove trees. In a period of 40 days of work, three people were capable of measuring 648 roots belonging to 81 trees, out of which 37% were found grafted to other tree roots. This simple method can be helpful in following shallow root systems with minimal impact and help map root connection networks of grafted trees.

Plant responses to heterogeneous salinity: growth of the halophyte Atriplex nummularia is determined by the root-weighted mean salinity of the root zone

PubMed Central

Bazihizina, Nadia

2012-01-01

Soil salinity is generally spatially heterogeneous, but our understanding of halophyte physiology under such conditions is limited. The growth and physiology of the dicotyledonous halophyte Atriplex nummularia was evaluated in split-root experiments to test whether growth is determined by: (i) the lowest; (ii) the highest; or (iii) the mean salinity of the root zone. In two experiments, plants were grown with uniform salinities or horizontally heterogeneous salinities (10–450mM NaCl in the low-salt side and 670mM in the high-salt side, or 10mM NaCl in the low-salt side and 500–1500mM in the high-salt side). The combined data showed that growth and gas exchange parameters responded most closely to the root-weighted mean salinity rather than to the lowest, mean, or highest salinity in the root zone. In contrast, midday shoot water potentials were determined by the lowest salinity in the root zone, consistent with most water being taken from the least negative water potential source. With uniform salinity, maximum shoot growth was at 120–230mM NaCl; ~90% of maximum growth occurred at 10mM and 450mM NaCl. Exposure of part of the roots to 1500mM NaCl resulted in an enhanced (+40%) root growth on the low-salt side, which lowered root-weighted mean salinity and enabled the maintenance of shoot growth. Atriplex nummularia grew even with extreme salinity in part of the roots, as long as the root-weighted mean salinity of the root zone was within the 10–450mM range. PMID:23125356

Plant responses to heterogeneous salinity: growth of the halophyte Atriplex nummularia is determined by the root-weighted mean salinity of the root zone.

PubMed

Bazihizina, Nadia; Barrett-Lennard, Edward G; Colmer, Timothy D

2012-11-01

Soil salinity is generally spatially heterogeneous, but our understanding of halophyte physiology under such conditions is limited. The growth and physiology of the dicotyledonous halophyte Atriplex nummularia was evaluated in split-root experiments to test whether growth is determined by: (i) the lowest; (ii) the highest; or (iii) the mean salinity of the root zone. In two experiments, plants were grown with uniform salinities or horizontally heterogeneous salinities (10-450 mM NaCl in the low-salt side and 670 mM in the high-salt side, or 10 mM NaCl in the low-salt side and 500-1500 mM in the high-salt side). The combined data showed that growth and gas exchange parameters responded most closely to the root-weighted mean salinity rather than to the lowest, mean, or highest salinity in the root zone. In contrast, midday shoot water potentials were determined by the lowest salinity in the root zone, consistent with most water being taken from the least negative water potential source. With uniform salinity, maximum shoot growth was at 120-230 mM NaCl; ~90% of maximum growth occurred at 10 mM and 450 mM NaCl. Exposure of part of the roots to 1500 mM NaCl resulted in an enhanced (+40%) root growth on the low-salt side, which lowered root-weighted mean salinity and enabled the maintenance of shoot growth. Atriplex nummularia grew even with extreme salinity in part of the roots, as long as the root-weighted mean salinity of the root zone was within the 10-450 mM range.

The Dynamics of Sediment Oxygenation in Marsh Rhizospheres

NASA Astrophysics Data System (ADS)

Koop-Jakobsen, K.

2014-12-01

Many marsh grasses are capable of internal oxygen transport from aboveground sources to belowground roots and rhizomes, where oxygen may leak across the rhizodermis and oxygenate the surrounding sediment. In the field, the extent of sediment oxygenation in marshes was assessed in the rhizosphere of the marsh grass; Spartina anglica, inserting 70 optical fiber oxygen sensors into the rhizosphere. Two locations with S. anglica growing in different sediment types were investigated. No oxygen was detected in the rhizospheres indicating that belowground sediment oxygenation in S. anglica has a limited effect on the bulk anoxic sediment and is restricted to sediment in the immediate vicinity of the roots. In the laboratory, the presence of 1.5mm wide and 16mm long oxic root zones was demonstrated around root tips of S. anglica growing in permeable sandy sediment using planar optodes recording 2D-images of the oxygen distribution. Oxic root zones in S. anglica growing in tidal flat deposits were significantly smaller. The size of oxic roots zones was highly dynamic and affected by tidal inundations as well as light availability. Atmospheric air was the primary oxygen source for belowground sediment oxygenation, whereas photosynthetic oxygen production only played a minor role for the size of the oxic root zones during air-exposure of the aboveground biomass. During tidal inundations (1.5 h) completely submerging the aboveground biomass cutting off access to atmospheric oxygen, the size of oxic root zones were reduced significantly in the light and oxic root zones were completely eliminated in darkness. Sediment oxygenation in the rhizospheres of marsh grasses is of significant importance for marshes ability to retain inorganic nitrogen before it reaches the coastal waters. The presence of oxic roots zones promotes coupled nitrification-denitrification at depth in the sediment, which can account for more than 80% of the total denitrification in marshes.

Simulating the fate of water in field soil crop environment

NASA Astrophysics Data System (ADS)

Cameira, M. R.; Fernando, R. M.; Ahuja, L.; Pereira, L.

2005-12-01

This paper presents an evaluation of the Root Zone Water Quality Model(RZWQM) for assessing the fate of water in the soil-crop environment at the field scale under the particular conditions of a Mediterranean region. The RZWQM model is a one-dimensional dual porosity model that allows flow in macropores. It integrates the physical, biological and chemical processes occurring in the root zone, allowing the simulation of a wide spectrum of agricultural management practices. This study involved the evaluation of the soil, hydrologic and crop development sub-models within the RZWQM for two distinct agricultural systems, one consisting of a grain corn planted in a silty loam soil, irrigated by level basins and the other a forage corn planted in a sandy soil, irrigated by sprinklers. Evaluation was performed at two distinct levels. At the first level the model capability to fit the measured data was analyzed (calibration). At the second level the model's capability to extrapolate and predict the system behavior for conditions different than those used when fitting the model was assessed (validation). In a subsequent paper the same type of evaluation is presented for the nitrogen transformation and transport model. At the first level a change in the crop evapotranspiration (ETc) formulation was introduced, based upon the definition of the effective leaf area, resulting in a 51% decrease in the root mean square error of the ETc simulations. As a result the simulation of the root water uptake was greatly improved. A new bottom boundary condition was implemented to account for the presence of a shallow water table. This improved the simulation of the water table depths and consequently the soil water evolution within the root zone. The soil hydraulic parameters and the crop variety specific parameters were calibrated in order to minimize the simulation errors of soil water and crop development. At the second level crop yield was predicted with an error of 1.1 and 2.8% for grain and forage corn, respectively. Soil water was predicted with an efficiency ranging from 50 to 95% for the silty loam soil and between 56 and 72% for the sandy soil. The purposed calibration procedure allowed the model to predict crop development, yield and the water balance terms, with accuracy that is acceptable in practical applications for complex and spatially variable field conditions. An iterative method was required to account for the strong interaction between the different model components, based upon detailed experimental data on soils and crops.

The locations and amounts of endogenous ions and elements in the cap and elongating zone of horizontally oriented roots of Zea mays L.: an electron-probe EDS study

NASA Technical Reports Server (NTRS)

Moore, R.; Cameron, I. L.; Hunter, K. E.; Olmos, D.; Smith, N. K.

1987-01-01

We used quantitative electron-probe energy-dispersive x-ray microanalysis to localize endogenous Na, Cl, K, P, S, Mg and Ca in cryofixed and freeze-dried cryosections of the cap (i.e. the putative site of graviperception) and elongating zone (i.e. site of gravicurvature) of horizontally oriented roots of Zea mays. Ca, Na, Cl, K and Mg accumulate along the lower side of caps of horizontally oriented roots. The most dramatic asymmetries of these ions occur in the apoplast, especially the mucilage. We could not detect any significant differences in the concentrations of these ions in the central cytoplasm of columella cells along the upper and lower sides of caps of horizontally-oriented roots. However, the increased amounts of Na, Cl, K and Mg in the longitudinal walls of columella cells along the lower side of the cap suggest that these ions may move down through the columella tissue of horizontally-oriented roots. Ca also accumulates (largely in the mucilage) along the lower side of the elongating zone of horizontally-oriented roots, while Na, P, Cl and K tend to accumulate along the upper side of the elongating zone. Of these ions, only K increases in concentration in the cytoplasm and longitudinal walls of cortical cells in the upper vs lower sides of the elongating zone. These results indicate that (1) gravity-induced asymmetries of ions differ significantly in the cap and elongating zone of graviresponding roots, (2) Ca accumulates along the lower side of the cap and elongating zone of graviresponding roots, (3) increased growth of the upper side of the elongating zone of horizontally-oriented roots correlates positively with increased amounts of K in the cytoplasm and longitudinal walls of cortical cells, and (4) the apoplast (especially the mucilage) may be an important component of the pathway via which ions move in graviresponding rots of Zea mays. These results are discussed relative to mechanisms for graviperception and gravicurvature of roots.

Root-zone temperature and nitrogen affect the yield and secondary metabolite concentration of fall- and spring-grown, high-density leaf lettuce.

PubMed

Bumgarner, Natalie R; Scheerens, Joseph C; Mullen, Robert W; Bennett, Mark A; Ling, Peter P; Kleinhenz, Matthew D

2012-01-15

Understanding the effects of temperature and nitrogen levels on key variables, particularly under field conditions during cool seasons of temperate climates, is important. Here, we document the impact of root-zone heating and nitrogen (N) fertility on the accumulation and composition of fall- and spring-grown lettuce biomass. A novel, scalable field system was employed. Direct-seeded plots containing a uniform, semi-solid, and nearly stable rooting medium were established outdoors in 2009 and 2010; each contained one of eight combinations of root-zone heating (-/+) and N fertility (0, 72, 144, and 576 mg day(-1)). Root-zone heating increased but withholding N decreased biomass accumulation in both years. Low N supplies were also associated with greater anthocyanin and total antioxidant power but lower N and phosphorus levels. Tissue chlorophyll a and vitamin C levels tracked root-zone temperature and N fertility more closely in 2009 and 2010, respectively. Experimentally imposed root-zone temperature and N levels influenced the amount and properties of fall- and spring-grown lettuce tissue. Ambient conditions, however, dictated which of these factors exerted the greatest effect on the variables measured. Collectively, the results point to the potential for gains in system sustainability and productivity, including with respect to supplying human nutritional units. Copyright © 2011 Society of Chemical Industry.

Bacterial interactions in the rhizosphere of seagrass communities in shallow coastal lagoons.

PubMed

Donnelly, A P; Herbert, R A

1998-12-01

Rooted phanerogam communities in the shallow intertidal and subtidal coastal zone represent productive and healthy ecosystems. Inorganic nutrients are assimilated into seagrass biomass. Much of the organic matter resulting from moribund seagrass is rapidly mineralized, principally by bacteria. The microbial community of the rhizosphere is also highly active due to the supply of organic matter released during photosynthesis. This active sediment community plays an important role through carbon, nitrogen and phosphorous cycling in maintaining the stability and productivity of seagrass meadows. Over the last two decades, however, seagrass meadows in European coastal areas have declined due to increasing pollution. As eutrophication advances a trasition occurs from rooted phanerogram dominated communities to planktonic algal blooms and/or cyanobacterial blooms. Such changes represent the decline of a stable, high biodiversity habitat to an unstable one dominated by a few species. These changes of community structure can occur rapidly once the internal nutrient and organic matter control cycles are exceeded. A field investigation was undertaken to establish the spatial distribution of bacterial populations of Zostera noltii colonized and uncolonized sediment in the Bassin d'Arcachon, France. Bacteria were enumerated using both plate count and MPN techniques for different functional groups as well as determining the total bacterial populations present. Nitrogen fixation, ammonification, sulphate reduction rates, as well as alkaline phosphatase activity were also determined. Colonization of the Z. noltii roots and rhizomes was studied by light and scanning electron microscopy. Results confirmed that higher bacterial populations were present in the rhizosphere of Z. noltii compared to uncolonized sediments. Furthermore, electron microscopy identified the rhizome as the main site of colonization for a diverse range of morphological groups of bacteria. Sulphate reducing bacteria were identified as the key group of bacteria involved in N-fixation in the rhizosphere of Z. noltii. The data will be discussed in relation to the role played by the rhizosphere microflora in supplying and mobilising nutrients in Z. noltii. 1998 Society of Applied Microbiology.

Leaf water status and root system water flux of shortleaf pine (Pinus echinata Mill.) seedlings in relation to new root growth after transplanting

Treesearch

John C. Brissette; Jim L. Chambers

1992-01-01

Water relations and root growth of shortleaf pine (Pinus echinata Mill.) were studied four weeks after seedlings from a half-sib family had been transplanted to one of three regimes of soil water availability at a root zone temperature of either 15 or 20 °C. About one-third of the variation in new root growth was explained by the root zone...

Comparing methods for inducing root rot of Rhododendron with Phytophthora cinnamomi and P. plurivora

USDA-ARS?s Scientific Manuscript database

Root rot, caused by Phytophthora cinnamomi and P. plurivora in containerized Rhododendron, can cause significant losses in the nursery industry. Studies commonly use a 48 h flooding event to stimulate root infection. While flooding rarely occurs in container nurseries, plants may sit in a shallow pu...

Conventional and technical diving surveys reveal elevated biomass and differing fish community composition from shallow and upper mesophotic zones of a remote United States coral reef.

PubMed

Muñoz, Roldan C; Buckel, Christine A; Whitfield, Paula E; Viehman, Shay; Clark, Randy; Taylor, J Christopher; Degan, Brian P; Hickerson, Emma L

2017-01-01

The world's coral reefs appear to be in a global decline, yet most previous research on coral reefs has taken place at depths shallower than 30 m. Mesophotic coral ecosystem (depths deeper than ~30 m) studies have revealed extensive, productive habitats and rich communities. Despite recent advances, mesophotic coral ecosystems remain understudied due to challenges with sampling at deeper depths. The few previous studies of mesophotic coral ecosystems have shown variation across locations in depth-specific species composition and assemblage shifts, potentially a response to differences in habitat or light availability/water clarity. This study utilized scuba to examine fish and benthic communities from shallow and upper mesophotic (to 45 m) zones of Flower Garden Banks National Marine Sanctuary (FGBNMS, 28°0'N; 93°50'W) from 2010-2012. Dominant planktivores were ubiquitous in shallow and upper mesophotic habitats, and comparisons with previous shallow research suggest this community distribution has persisted for over 30 years. Planktivores were abundant in shallow low-relief habitats on the periphery of the coral reef, and some of these sites that contained habitat transitioning from high to low relief supported high biomass of benthic predators. These peripheral sites at FGBNMS may be important for the trophic transfer of oceanic energy to the benthic coral reef. Distinct differences between upper mesophotic and shallow communities were also observed. These included greater overall fish (as well as apex predator) biomass in the upper mesophotic, differences in apex predator community composition between depth zones, and greater percent cover of algae, rubble, sand, and sponges in the upper mesophotic. Greater fish biomass in the upper mesophotic and similar fish community composition between depth zones provide preliminary support that upper mesophotic habitats at FGBNMS have the capacity to serve as refugia for the shallow-water reefs. Diving surveys of the upper mesophotic and shallow-water coral reef have revealed valuable information concerning the reef fish community in the northern Gulf of Mexico, with implications for the conservation of apex predators, oceanic coral reefs, and the future management of FGBNMS.

Conventional and technical diving surveys reveal elevated biomass and differing fish community composition from shallow and upper mesophotic zones of a remote United States coral reef

PubMed Central

Buckel, Christine A.; Whitfield, Paula E.; Viehman, Shay; Clark, Randy; Taylor, J. Christopher; Degan, Brian P.; Hickerson, Emma L.

2017-01-01

The world’s coral reefs appear to be in a global decline, yet most previous research on coral reefs has taken place at depths shallower than 30 m. Mesophotic coral ecosystem (depths deeper than ~30 m) studies have revealed extensive, productive habitats and rich communities. Despite recent advances, mesophotic coral ecosystems remain understudied due to challenges with sampling at deeper depths. The few previous studies of mesophotic coral ecosystems have shown variation across locations in depth-specific species composition and assemblage shifts, potentially a response to differences in habitat or light availability/water clarity. This study utilized scuba to examine fish and benthic communities from shallow and upper mesophotic (to 45 m) zones of Flower Garden Banks National Marine Sanctuary (FGBNMS, 28°0ʹN; 93°50ʹW) from 2010–2012. Dominant planktivores were ubiquitous in shallow and upper mesophotic habitats, and comparisons with previous shallow research suggest this community distribution has persisted for over 30 years. Planktivores were abundant in shallow low-relief habitats on the periphery of the coral reef, and some of these sites that contained habitat transitioning from high to low relief supported high biomass of benthic predators. These peripheral sites at FGBNMS may be important for the trophic transfer of oceanic energy to the benthic coral reef. Distinct differences between upper mesophotic and shallow communities were also observed. These included greater overall fish (as well as apex predator) biomass in the upper mesophotic, differences in apex predator community composition between depth zones, and greater percent cover of algae, rubble, sand, and sponges in the upper mesophotic. Greater fish biomass in the upper mesophotic and similar fish community composition between depth zones provide preliminary support that upper mesophotic habitats at FGBNMS have the capacity to serve as refugia for the shallow-water reefs. Diving surveys of the upper mesophotic and shallow-water coral reef have revealed valuable information concerning the reef fish community in the northern Gulf of Mexico, with implications for the conservation of apex predators, oceanic coral reefs, and the future management of FGBNMS. PMID:29161314

Prediction of Root Zone Soil Moisture using Remote Sensing Products and In-Situ Observation under Climate Change Scenario

NASA Astrophysics Data System (ADS)

Singh, G.; Panda, R. K.; Mohanty, B.

2015-12-01

Prediction of root zone soil moisture status at field level is vital for developing efficient agricultural water management schemes. In this study, root zone soil moisture was estimated across the Rana watershed in Eastern India, by assimilation of near-surface soil moisture estimate from SMOS satellite into a physically-based Soil-Water-Atmosphere-Plant (SWAP) model. An ensemble Kalman filter (EnKF) technique coupled with SWAP model was used for assimilating the satellite soil moisture observation at different spatial scales. The universal triangle concept and artificial intelligence techniques were applied to disaggregate the SMOS satellite monitored near-surface soil moisture at a 40 km resolution to finer scale (1 km resolution), using higher spatial resolution of MODIS derived vegetation indices (NDVI) and land surface temperature (Ts). The disaggregated surface soil moisture were compared to ground-based measurements in diverse landscape using portable impedance probe and gravimetric samples. Simulated root zone soil moisture were compared with continuous soil moisture profile measurements at three monitoring stations. In addition, the impact of projected climate change on root zone soil moisture were also evaluated. The climate change projections of rainfall were analyzed for the Rana watershed from statistically downscaled Global Circulation Models (GCMs). The long-term root zone soil moisture dynamics were estimated by including a rainfall generator of likely scenarios. The predicted long term root zone soil moisture status at finer scale can help in developing efficient agricultural water management schemes to increase crop production, which lead to enhance the water use efficiency.

Soil water nitrate concentrations in giant cane and forest riparian buffer zones

Treesearch

Jon E. Schoonover; Karl W. J. Williard; James J. Zaczek; Jean C. Mangun; Andrew D. Carver

2003-01-01

Soil water nitrate concentrations in giant cane and forest riparian buffer zones along Cypress Creek in southern Illinois were compared to determine if the riparian zones were sources or sinks for nitrogen in the rooting zone. Suction lysimeters were used to collect soil water samples from the lower rooting zone in each of the two vegetation types. The cane riparian...

Site-specific to local-scale shallow landslides triggering zones assessment using TRIGRS

NASA Astrophysics Data System (ADS)

Bordoni, M.; Meisina, C.; Valentino, R.; Bittelli, M.; Chersich, S.

2015-05-01

Rainfall-induced shallow landslides are common phenomena in many parts of the world, affecting cultivation and infrastructure and sometimes causing human losses. Assessing the triggering zones of shallow landslides is fundamental for land planning at different scales. This work defines a reliable methodology to extend a slope stability analysis from the site-specific to local scale by using a well-established physically based model (TRIGRS-unsaturated). The model is initially applied to a sample slope and then to the surrounding 13.4 km2 area in Oltrepo Pavese (northern Italy). To obtain more reliable input data for the model, long-term hydro-meteorological monitoring has been carried out at the sample slope, which has been assumed to be representative of the study area. Field measurements identified the triggering mechanism of shallow failures and were used to verify the reliability of the model to obtain pore water pressure trends consistent with those measured during the monitoring activity. In this way, more reliable trends have been modelled for past landslide events, such as the April 2009 event that was assumed as a benchmark. The assessment of shallow landslide triggering zones obtained using TRIGRS-unsaturated for the benchmark event appears good for both the monitored slope and the whole study area, with better results when a pedological instead of geological zoning is considered at the regional scale. The sensitivity analyses of the influence of the soil input data show that the mean values of the soil properties give the best results in terms of the ratio between the true positive and false positive rates. The scheme followed in this work allows us to obtain better results in the assessment of shallow landslide triggering areas in terms of the reduction in the overestimation of unstable zones with respect to other distributed models applied in the past.

Glacially-derived overpressure in the northeastern Alaskan subduction zone: combined tomographic and morphometric analysis of shallow sediments on the Yakutat shelf and slope, Gulf of Alaska

NASA Astrophysics Data System (ADS)

Clary, W. A.; Worthington, L. L.; Scuderi, L. A.; Daigle, H.; Swartz, J. M.

2017-12-01

The Pamplona zone fold and thrust belt is the offshore expression of convergence and shallow subduction of the Yakutat microplate beneath North America in the northeastern Alaska subduction zone. The combination of convergent tectonics and glaciomarine sedimentary processes create patterns of deformation and deposition resulting in a shallow sedimentary sequence with varying compaction, fluid pressure, and fault activity. We propose that velocity variations observed in our tomographic analysis represent long-lived fluid overpressure due to loading by ice sheets and sediments. Regions with bathymetric and stratigraphic evidence of recent ice sheets and associated sedimentation should be collocated with evidence of overpressure (seismic low velocity zones) in the shallow sediments. Here, we compare a velocity model with shelf seismic stratigraphic facies and modern seafloor morphology. To document glacially derived morphology we use high resolution bathymetry to identify channel and gully networks on the western Yakutat shelf-slope then analyze cross-channel shape indices across the study area. We use channel shape index measurements as a proxy of recent ice-proximal sedimentation based on previously published results that proposed a close correlation. Profiles taken at many locations were fitted with a power function and assigned a shape - U-shape channels likely formed proximal to recent ice advances. Detailed velocity models were created by a combination of streamer tomography and pre-stack depth migration velocities with seismic data including: a 2008 R/V Langseth dataset from the St. Elias Erosion and Tectonics Project (STEEP); and a 2004 high-resolution R/V Ewing dataset. Velocity-porosity-permeability relationships developed using IODP Expedition 341 drilling data inform interpretation and physical properties analyses of the shallow sediments. Initial results from a 35 km profile extending SE seaward of the Bering glacier and subparallel to the Bering trough suggest a spatial relationship between the extent of U-shaped profiles and low-velocity shallow sediments. Towards the SE end of the model we observe a large overlap of U-shaped indices, and a shallow low-velocity zone in the mapped extent of the last glacial maximum suggestive of overpressure due to loading by ice sheet activity.

Shallow velocity structure of the Alaska Peninsula subduction zone and implications for controls on seismic behavior

NASA Astrophysics Data System (ADS)

Li, J.; Shillington, D. J.; Becel, A.; Nedimovic, M. R.; Kuehn, H.; Webb, S. C.; Abers, G. A.; Keranen, K. M.; Saffer, D. M.

2014-12-01

Downdip and along-strike variations in the seismic behavior of subduction zone megathrust faults are thought to be strongly controlled by changes in the material properties along the plate boundary. Roughness and hydration of the incoming plate, fluid pressure and lithology in the subducting sediment channel are likely to control the distribution of shallower rupture. Here, we focus on the subduction zone offshore of the Alaska Peninsula. In 2011, the ALEUT program acquired deep penetration multichannel seismic (MCS) reflection and ocean bottom seismometer (OBS) data across the apparently freely sliding Shumagin Gap, the locked Semidi segment that last ruptured in 1938 M8.2 earthquake, and the locked western Kodiak asperity, which ruptured in the 1964 M9.2 earthquake. Seismic reflection data from the ALEUT cruise reveal significant variability in the thickness of sediment on the incoming plate and entering the trench, and the roughness and degree of hydration of the incoming plate. Oceanic crust entering the trench in the Shumagin gap is rugged with extensive faults and only a thin layer of sediment (<0.5 km thick). Farther east in the Semidi segment, the subducting plate has a smoother surface with thicker sediments (~1 km thick) and less faulting/hydration. To better constrain the properties of the accretionary prism and shallow part of the plate boundary, we are undertaking travel time tomography using reflection/refraction phases in OBS and MCS data, and constraints on the interface geometry from MCS images to estimate the detailed shallow velocity structure, with particular focus on properties within the shallow subduction channel. We observe refractions and reflections in OBS data from the shallow part of the subduction zone in both the Shumagin Gap and Semidi segment, including reflections off the top and base of what appears to be a layer of subducting sediment, which can be used for this work. We plan to present initial models of the shallow part of the subduction zone from both segments and discuss comparisons between the two.

Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification

PubMed Central

Qu, Lianghuan; Wu, Chunyan; Zhang, Fei; Wu, Yangyang; Fang, Chuanying; Jin, Cheng; Liu, Xianqing; Luo, Jie

2016-01-01

Pectin synthesis and modification are vital for plant development, although the underlying mechanisms are still not well understood. Here, we report the functional characterization of the OsTSD2 gene, which encodes a putative methyltransferase in rice. All three independent T-DNA insertion lines of OsTSD2 displayed dwarf phenotypes and serial alterations in different zones of the root. These alterations included abnormal cellular adhesion and schizogenous aerenchyma formation in the meristematic zone, inhibited root elongation in the elongation zone, and higher lateral root density in the mature zone. Immunofluorescence (with LM19) and Ruthenium Red staining of the roots showed that unesterified homogalacturonan (HG) was increased in Ostsd2 mutants. Biochemical analysis of cell wall pectin polysaccharides revealed that both the monosaccharide composition and the uronic acid content were decreased in Ostsd2 mutants. Increased endogenous ABA content and opposite roles performed by ABA and IAA in regulating cellular adhesion in the Ostsd2 mutants suggested that OsTSD2 is required for root development in rice through a pathway involving pectin synthesis/modification. A hypothesis to explain the relationship among OsTSD2, pectin methylesterification, and root development is proposed, based on pectin’s function in regional cell extension/division in a zone-dependent manner. PMID:27497286

Induction of curvature in maize roots by calcium or by thigmostimulation: role of the postmitotic isodiametric growth zone

NASA Technical Reports Server (NTRS)

Ishikawa, H.; Evans, M. L.

1992-01-01

We examined the response of primary roots of maize (Zea mays L. cv Merit) to unilateral application of calcium with particular attention to the site of application, the dependence on growth rate, and possible contributions of thigmotropic stimulation during application. Unilateral application of agar to the root cap induced negative curvature whether or not the agar contained calcium. This apparent thigmotropic response was enhanced by including calcium in the agar. Curvature away from objects applied unilaterally to the extreme root tip occurred both in intact and detipped roots. When agar containing calcium chloride was applied to one side of the postmitotic isodiametric growth zone ( a region between the apical meristem and the elongation zone), the root curved toward the side of application. This response could not be induced by plain agar. We conclude that curvature away from calcium applied to the root tip results from a thigmotropic response to stimulation during application. In contrast, curvature toward the calcium applied to the postmitotic isodiametric growth zone results from direct calcium-induced inhibition of growth.

Elastic Properties of Subduction Zone Materials in the Large Shallow Slip Environment for the Tohoku 2011 Earthquake: Laboratory data from JFAST Core Samples

NASA Astrophysics Data System (ADS)

Jeppson, T.; Tobin, H. J.

2014-12-01

The 11 March 2011 Tohoku-Oki earthquake (Mw=9.0) produced large displacements of ~50 meters near the Japan Trench. In order to understand earthquake propagation and slip stabilization in this environment, quantitative values of the real elastic properties of fault zones and their surrounding wall rock material is crucial. Because elastic and mechanical properties of faults and wallrocks are controlling factors in fault strength, earthquake generation and propagation, and slip stabilization, an understanding of these properties and their depth dependence is essential to understanding and accurately modeling earthquake rupture. In particular, quantitatively measured S-wave speeds, needed for estimation of elastic properties, are scarce in the literature. We report laboratory ultrasonic velocity measurements performed at elevated pressures, as well as the calculated dynamic elastic moduli, for samples of the rock surrounding the Tohoku earthquake principal fault zone recovered by drilling during IODP Expedition 343, Japan Trench Fast Drilling Project (JFAST). We performed measurements on five samples of gray mudstone from the hanging wall and one sample of underthrust brown mudstone from the footwall. We find P- and S-wave velocities of 2.0 to 2.4 km/s and 0.7 to 1.0 km/s, respectively, at 5 MPa effective pressure. At the same effective pressure, the hanging wall samples have shear moduli ranging from 1.4 to 2.2 GPa and the footwall sample has a shear modulus of 1.0 GPa. While these values are perhaps not surprising for shallow, clay-rich subduction zone sediments, they are substantially lower than the 30 GPa commonly assumed for rigidity in earthquake rupture and propagation models [e.g., Ide et al., 1993; Liu and Rice, 2005; Loveless and Meade, 2011]. In order to better understand the elastic properties of shallow subduction zone sediments, our measurements from the Japan Trench are compared to similar shallow drill core samples from the Nankai Trough, Costa Rica, Cascadia, and Barbados ridge subduction zones. We find that shallow subduction zone sediments in general have similarly low rigidity. These data provide important ground-truth values that can be used to parameterize fault slip models addressing the problem of shallow, tsunamigenic propagation of megathrust earthquakes.

Anomalous Seismic Radiation in the Shallow Subduction Zone Explained by Extensive Poroplastic Deformation in the Overriding Wedge

NASA Astrophysics Data System (ADS)

Hirakawa, E. T.; Ma, S.

2012-12-01

The deficiency of high-frequency seismic radiation from shallow subduction zone earthquakes was first recognized in tsunami earthquakes (Kanamori, 1972), which produce larger tsunamis than expected from short-period (20 s) surface wave excitation. Shallow subduction zone earthquakes were also observed to have unusually low energy-to-moment ratios compared to regular subduction zone earthquakes (e.g., Newman and Okal, 1998; Venkataraman and Kanamori, 2004; Lay et al., 2012). What causes this anomalous radiation and how it relates to large tsunami generation has remained unclear. Here we show that these anomalous observations can be due to extensive poroplastic deformation in the overriding wedge, which provides a unifying interpretation. Ma (2012) showed that the pore pressure increase in the wedge due to up-dip rupture propagation significantly weakens the wedge, leading to widespread Coulomb failure in the wedge. Widespread failure gives rise to slow rupture velocity and large seafloor uplift (landward from the trench) in the case of a shallow fault dip. Here we extend this work and demonstrate that the large seafloor uplift due to the poroplastic deformation significantly dilates the fault behind the rupture front, which reduces the normal stress on the fault and increases the stress drop, slip, and rupture duration. The spectral amplitudes of the moment-rate time function is significantly less at high frequencies than those from elastic simulations. Large tsunami generation and deficiency of high-frequency radiation are thus two consistent manifestations of the same mechanism (poroplastic deformation). Although extensive poroplastic deformation in the wedge represents a significant portion of total seismic moment release, the plastic deformation is shown to act as a large energy sink, leaving less energy to be radiated and leading to low energy-to-moment ratios as observed for shallow subduction zone earthquakes.

Root reinforcement and its implications in shallow landsliding susceptibility on a small alpine catchment

NASA Astrophysics Data System (ADS)

Morandi, M. C.; Farabegoli, E.; Onorevoli, G.

2012-04-01

Roots shear resistance offers a considerable contribution to hill-slope stability on vegetated terrains. Through the pseudo-cohesion of shrubs, trees and turf's roots, the geomechanical properties of soils can be drastically increased, exerting a positive influence on the hillslope stability. We analysed the shallow landsliding susceptibility of a small alpine catchment (Duron valley, Central Dolomites, Italy) that we consider representative of a wide altitude belt of the Dolomites (1800 - 2400 m a.s.l). The catchment is mostly mantled by grass (Nardetum strictae s.l.), with clustered shrubs (Rhododendron hirsutum and Juniperus nana), and trees (Pinus cembra, Larix decidua and Picea abies). The soil depth, investigated with direct and indirect methods, ranges from 0 to 180 cm, with its peak at the hollow axes. Locally, the bedrock, made of Triassic volcanic rocks, is deeply incised by the Holocene drainage network. Intensive grazing of cows and horses pervades the catchment area and cattle-trails occupy ca 20% of the grass cover. We used laboratory and field tests to characterize the geotechnical properties of these alpine soils; moreover we designed and tested an experimental device that measures, in situ, the shear strengths of the grass mantle. In the study area we mapped 18 shallow landslides, mostly related to road cuts and periodically reactivated as retrogressive landslides. The triggering mechanisms of these shallow landslides were qualitatively analysed at large scale and modelled at smaller scale. We used SHALSTAB to model the shallow landsliding susceptibility of the catchment at the basin scale and SLIDE (RocScience) to compute the Safety Factor at the versant scale. Qualitative management solutions are provided, in order to reduce the shallow landsliding susceptibility risk in this alpine context.

Modelling water uptake efficiency of root systems

NASA Astrophysics Data System (ADS)

Leitner, Daniel; Tron, Stefania; Schröder, Natalie; Bodner, Gernot; Javaux, Mathieu; Vanderborght, Jan; Vereecken, Harry; Schnepf, Andrea

2016-04-01

Water uptake is crucial for plant productivity. Trait based breeding for more water efficient crops will enable a sustainable agricultural management under specific pedoclimatic conditions, and can increase drought resistance of plants. Mathematical modelling can be used to find suitable root system traits for better water uptake efficiency defined as amount of water taken up per unit of root biomass. This approach requires large simulation times and large number of simulation runs, since we test different root systems under different pedoclimatic conditions. In this work, we model water movement by the 1-dimensional Richards equation with the soil hydraulic properties described according to the van Genuchten model. Climatic conditions serve as the upper boundary condition. The root system grows during the simulation period and water uptake is calculated via a sink term (after Tron et al. 2015). The goal of this work is to compare different free software tools based on different numerical schemes to solve the model. We compare implementations using DUMUX (based on finite volumes), Hydrus 1D (based on finite elements), and a Matlab implementation of Van Dam, J. C., & Feddes 2000 (based on finite differences). We analyse the methods for accuracy, speed and flexibility. Using this model case study, we can clearly show the impact of various root system traits on water uptake efficiency. Furthermore, we can quantify frequent simplifications that are introduced in the modelling step like considering a static root system instead of a growing one, or considering a sink term based on root density instead of considering the full root hydraulic model (Javaux et al. 2008). References Tron, S., Bodner, G., Laio, F., Ridolfi, L., & Leitner, D. (2015). Can diversity in root architecture explain plant water use efficiency? A modeling study. Ecological modelling, 312, 200-210. Van Dam, J. C., & Feddes, R. A. (2000). Numerical simulation of infiltration, evaporation and shallow groundwater levels with the Richards equation. Journal of Hydrology, 233(1), 72-85. Javaux, M., Schröder, T., Vanderborght, J., & Vereecken, H. (2008). Use of a three-dimensional detailed modeling approach for predicting root water uptake. Vadose Zone Journal, 7(3), 1079-1088.

Ocean Exploration and Drug Discovery in the Twilight Zone

NASA Astrophysics Data System (ADS)

Slattery, M.; Gochfeld, D.; Lesser, M.

2006-12-01

The transition between shallow coral reef communities and aphotic deep-water communities in the tropics (= 50m to 150m) is often called the "twilight zone", and it is characterized by reduced light and consequently photosynthesis. But while reef-building coral diversity decreases with increasing depth, many sponges, soft corals, and even low-light acclimatized primary producers are abundant. Thus, this is a zone of potentially incredible ecological significance, unique biodiversity, and unusual physiological adaptations where one might expect to find important natural products that might be used as pharmaceuticals or other biotechnology products. This is also one of the least studied ecosystems in the marine environment since it exceeds the limits of traditional SCUBA, but is considered too shallow to warrant costly submersible time. We have examined the Twilight Zone off the Exuma Sound Shelf, Bahamas, over the last three years using technical mixed gas diving. Biodiversity data indicate a rich sponge community consisting of 92 species and approximately 15% endemism. Sponge diversity and density increased with depth as picoplankton food abundance increased. Sponges were also larger and faster growing at depth than in shallow-water conspecific populations. This unique biodiversity represents an important biotechnological resource as well; two thirds of the sponges exhibit promising biomedical activity compared to less than one third of the shallow reef sponge species. In addition, 5 of 7 species that co-occur at shallow and deep sites exhibited greater bioactivity due to quantitative and qualitative differences in the natural products produced in each depth range.

Common and distinguishing features of the bacterial and fungal communities in biological soil crusts and shrub root zone soils

USGS Publications Warehouse

Steven, Blaire; Gallegos-Graves, La Verne; Yeager, Chris; Belnap, Jayne; Kuske, Cheryl R.

2013-01-01

Soil microbial communities in dryland ecosystems play important roles as root associates of the widely spaced plants and as the dominant members of biological soil crusts (biocrusts) colonizing the plant interspaces. We employed rRNA gene sequencing (bacterial 16S/fungal large subunit) and shotgun metagenomic sequencing to compare the microbial communities inhabiting the root zones of the dominant shrub, Larrea tridentata (creosote bush), and the interspace biocrusts in a Mojave desert shrubland within the Nevada Free Air CO2 Enrichment (FACE) experiment. Most of the numerically abundant bacteria and fungi were present in both the biocrusts and root zones, although the proportional abundance of those members differed significantly between habitats. Biocrust bacteria were predominantly Cyanobacteria while root zones harbored significantly more Actinobacteria and Proteobacteria. Pezizomycetes fungi dominated the biocrusts while Dothideomycetes were highest in root zones. Functional gene abundances in metagenome sequence datasets reflected the taxonomic differences noted in the 16S rRNA datasets. For example, functional categories related to photosynthesis, circadian clock proteins, and heterocyst-associated genes were enriched in the biocrusts, where populations of Cyanobacteria were larger. Genes related to potassium metabolism were also more abundant in the biocrusts, suggesting differences in nutrient cycling between biocrusts and root zones. Finally, ten years of elevated atmospheric CO2 did not result in large shifts in taxonomic composition of the bacterial or fungal communities or the functional gene inventories in the shotgun metagenomes.

Rooting depth varies differentially in trees and grasses as a function of mean annual rainfall in an African savanna.

PubMed

Holdo, Ricardo M; Nippert, Jesse B; Mack, Michelle C

2018-01-01

A significant fraction of the terrestrial biosphere comprises biomes containing tree-grass mixtures. Forecasting vegetation dynamics in these environments requires a thorough understanding of how trees and grasses use and compete for key belowground resources. There is disagreement about the extent to which tree-grass vertical root separation occurs in these ecosystems, how this overlap varies across large-scale environmental gradients, and what these rooting differences imply for water resource availability and tree-grass competition and coexistence. To assess the extent of tree-grass rooting overlap and how tree and grass rooting patterns vary across resource gradients, we examined landscape-level patterns of tree and grass functional rooting depth along a mean annual precipitation (MAP) gradient extending from ~ 450 to ~ 750 mm year -1 in Kruger National Park, South Africa. We used stable isotopes from soil and stem water to make inferences about relative differences in rooting depth between these two functional groups. We found clear differences in rooting depth between grasses and trees across the MAP gradient, with grasses generally exhibiting shallower rooting profiles than trees. We also found that trees tended to become more shallow-rooted as a function of MAP, to the point that trees and grasses largely overlapped in terms of rooting depth at the wettest sites. Our results reconcile previously conflicting evidence for rooting overlap in this system, and have important implications for understanding tree-grass dynamics under altered precipitation scenarios.

Graviresponsiveness of surgically altered primary roots of Zea mays

NASA Technical Reports Server (NTRS)

Maimon, E.; Moore, R.

1991-01-01

We examined the gravitropic responses of surgically altered primary roots of Zea mays to determine the route by which gravitropic inhibitors move from the root tip to the elongating zone. Horizontally oriented roots, from which a 1-mm-wide girdle of epidermis plus 2-10 layers of cortex were removed from the apex of the elongating zone, curve downward. However, curvature occurred only apical to the girdle. Filling the girdle with mucilage-like material transmits curvature beyond the girdle. Vertically oriented roots with a half-girdle' (i.e. the epidermis and 2-10 layers of the cortex removed from half of the circumference of the apex of the elongating zone) curve away from the girdle. Inserting the half-girdle at the base of the elongating zone induces curvature towards the girdle. Filling the half-circumference girdles with mucilage-like material reduced curvature significantly. Stripping the epidermis and outer 2-5 layers of cortex from the terminal 1.5 cm of one side of a primary root induces curvature towards the cut, irrespective of the root's orientation to gravity. This effect is not due to desiccation since treated roots submerged in water also curved towards their cut surface. Coating a root's cut surface with a mucilage-like substance minimizes curvature. These results suggest that the outer cell-layers of the root, especially the epidermis, play an important role in root gravicurvature, and the gravitropic signals emanating from the root tip can move apoplastically through mucilage.

Chilean megathrust earthquake recurrence linked to frictional contrast at depth

NASA Astrophysics Data System (ADS)

Moreno, M.; Li, S.; Melnick, D.; Bedford, J. R.; Baez, J. C.; Motagh, M.; Metzger, S.; Vajedian, S.; Sippl, C.; Gutknecht, B. D.; Contreras-Reyes, E.; Deng, Z.; Tassara, A.; Oncken, O.

2018-04-01

Fundamental processes of the seismic cycle in subduction zones, including those controlling the recurrence and size of great earthquakes, are still poorly understood. Here, by studying the 2016 earthquake in southern Chile—the first large event within the rupture zone of the 1960 earthquake (moment magnitude (Mw) = 9.5)—we show that the frictional zonation of the plate interface fault at depth mechanically controls the timing of more frequent, moderate-size deep events (Mw < 8) and less frequent, tsunamigenic great shallow earthquakes (Mw > 8.5). We model the evolution of stress build-up for a seismogenic zone with heterogeneous friction to examine the link between the 2016 and 1960 earthquakes. Our results suggest that the deeper segments of the seismogenic megathrust are weaker and interseismically loaded by a more strongly coupled, shallower asperity. Deeper segments fail earlier ( 60 yr recurrence), producing moderate-size events that precede the failure of the shallower region, which fails in a great earthquake (recurrence >110 yr). We interpret the contrasting frictional strength and lag time between deeper and shallower earthquakes to be controlled by variations in pore fluid pressure. Our integrated analysis strengthens understanding of the mechanics and timing of great megathrust earthquakes, and therefore could aid in the seismic hazard assessment of other subduction zones.

Transition zone cells reach G2 phase before initiating elongation in maize root apex

PubMed Central

Alarcón, M. Victoria

2017-01-01

ABSTRACT Root elongation requires cell divisions in the meristematic zone and cell elongation in the elongation zone. The boundary between dividing and elongating cells is called the transition zone. In the meristem zone, initial cells are continuously dividing, but on the basal side of the meristem cells exit the meristem through the transition zone and enter in the elongation zone, where they stop division and rapidly elongate. Throughout this journey cells are accompanied by changes in cell cycle progression. Flow cytometry analysis showed that meristematic cells are in cycle, but exit when they enter the elongation zone. In addition, the percentage of cells in G2 phase (4C) strongly increased from the meristem to the elongation zone. However, we did not observe remarkable changes in the percentage of cells in cell cycle phases along the entire elongation zone. These results suggest that meristematic cells in maize root apex stop the cell cycle in G2 phase after leaving the meristem. PMID:28495964

Modelling of seasonal dynamics of Wetland-Groundwater flow interaction in the Canadian Prairies

NASA Astrophysics Data System (ADS)

Ali, Melkamu; Nussbaumer, Raphaël; Ireson, Andrew; Keim, Dawn

2015-04-01

Wetland-shallow groundwater interaction is studied at the St. Denis National Wildlife Area in Saskatchewan, Canada, located within the northern glaciated prairies of North America. Ponds in the Canadian Prairies are intermittently connected by fill-spill processes in the spring and growing season of some wetter years. The contribution of the ponds and wetlands to groundwater is still a significant research challenge. The objective of this study is to evaluate model's ability to reproduce observed effects of groundwater-wetland interactions including seasonal pattern of shallow groundwater table, intended flow direction and to quantify the depression induced infiltration from the wetland to the surrounding uplands. The integrated surface-wetland-shallow groundwater processes and the changes in land-energy and water balances caused by the flow interaction are simulated using ParFlow-CLM at a small watershed of 1km2 containing both permanent and seasonal wetland complexes. We compare simulated water table depth with piezometers reading monitored by level loggers at the watershed. We also present the strengths and limitations of the model in reproducing observed behaviour of the groundwater table response to the spring snowmelt and summer rainfall. Simulations indicate that the shallow water table at the uphill recovers quickly after major rainfall events in early summer that generates lateral flow to the pond. In late summer, the wetland supplies water to the surrounding upland when the evapotranspiration is higher than the precipitation in which more water from the root zone is up taken by plants. Results also show that Parflow-CLM is able to reasonably simulate the water table patterns response to summer rainfall, while it is insufficient to reproduce the spring snowmelt infiltration which is the most dominant hydrological process in the Prairies.

Role of Subsurface Physics in the Assimilation of Surface Soil Moisture Observations

NASA Technical Reports Server (NTRS)

Reichle, R. H.

2010-01-01

Root zone soil moisture controls the land-atmosphere exchange of water and energy and exhibits memory that may be useful for climate prediction at monthly scales. Assimilation of satellite-based surface soil moisture observations into a land surface model is an effective way to estimate large-scale root zone soil moisture. The propagation of surface information into deeper soil layers depends on the model-specific representation of subsurface physics that is used in the assimilation system. In a suite of experiments we assimilate synthetic surface soil moisture observations into four different models (Catchment, Mosaic, Noah and CLM) using the Ensemble Kalman Filter. We demonstrate that identical twin experiments significantly overestimate the information that can be obtained from the assimilation of surface soil moisture observations. The second key result indicates that the potential of surface soil moisture assimilation to improve root zone information is higher when the surface to root zone coupling is stronger. Our experiments also suggest that (faced with unknown true subsurface physics) overestimating surface to root zone coupling in the assimilation system provides more robust skill improvements in the root zone compared with underestimating the coupling. When CLM is excluded from the analysis, the skill improvements from using models with different vertical coupling strengths are comparable for different subsurface truths. Finally, the skill improvements through assimilation were found to be sensitive to the regional climate and soil types.

The Root Transition Zone: A Hot Spot for Signal Crosstalk.

PubMed

Kong, Xiangpei; Liu, Guangchao; Liu, Jiajia; Ding, Zhaojun

2018-05-01

The root transition zone (TZ), located between the apical meristem and basal elongation region, has a unique role in root growth and development. The root TZ is not only the active site for hormone crosstalk, but also the perception site for various environmental cues, such as aluminum (Al) stress and low phosphate (Pi) stress. We propose that the root TZ is a hot spot for the integration of diverse inputs from endogenous (hormonal) and exogenous (sensorial) stimuli to control root growth. Copyright © 2018 Elsevier Ltd. All rights reserved.

The variability of root cohesion as an influence on shallow landslide susceptibility in the Oregon Coast Range

USGS Publications Warehouse

Schmidt, K.M.; Roering, J.J.; Stock, J.D.; Dietrich, W.E.; Montgomery, D.R.; Schaub, T.

2001-01-01

Decades of quantitative measurement indicate that roots can mechanically reinforce shallow soils in forested landscapes. Forests, however, have variations in vegetation species and age which can dominate the local stability of landslide-initiation sites. To assess the influence of this variability on root cohesion we examined scarps of landslides triggered during large storms in February and November of 1996 in the Oregon Coast Range and hand-dug soil pits on stable ground. At 41 sites we estimated the cohesive reinforcement to soil due to roots by determining the tensile strength, species, depth, orientation, relative health, and the density of roots ???1 mm in diameter within a measured soil area. We found that median lateral root cohesion ranges from 6.8-23.2 kPa in industrial forests with significant understory and deciduous vegetation to 25.6-94.3 kPa in natural forests dominated by coniferous vegetation. Lateral root cohesion in clearcuts is uniformly ???10 kPa. Some 100-year-old industrial forests have species compositions, lateral root cohesion, and root diameters that more closely resemble 10-year-old clearcuts than natural forests. As such, the influence of root cohesion variability on landslide susceptibility cannot be determined solely from broad age classifications or extrapolated from the presence of one species of vegetation. Furthermore, the anthropogenic disturbance legacy modifies root cohesion for at least a century and should be considered when comparing contemporary landslide rates from industrial forests with geologic background rates.

Ground-water levels and direction of ground-water flow in the central part of Bernalillo County, New Mexico, summer 1983

USGS Publications Warehouse

Kues, Georginna E.

1986-01-01

In 1980, toxic chemicals were detected in water samples from wells in and near Albuquerque 's San Jose well field. At the request of the Environmental Improvement Division of the New Mexico Health and Environment Department, the U.S. Geological Survey conducted a study to determine groundwater levels and flow direction. Water levels were measured in 44 wells in a 64 sq mi area along the Rio Grande and adjacent areas during a period of near maximum municipal pumpage. Based on the altitude of screened interval, wells were grouped into shallow (screened internal above an altitude of 4,800 ft) or deep (screened internal below an altitude of 4,800 ft) zones. Groundwater in the shallow zone generally moves from north to south parallel to flow in the Rio Grande. Groundwater in the deep zone generally moves from the northwest to the east and southeast. A poorly developed cone of depression within the deep zone was present in the northeast. Water levels in wells were as much as 18 feet higher in the shallow zone than in the deep zone in the vicinity of the San Jose well field, indicating a downward gradient. (Author 's abstract)

Dynamics of oxygen and carbon dioxide in rhizospheres of Lobelia dortmanna - a planar optode study of belowground gas exchange between plants and sediment.

PubMed

Lenzewski, Nikola; Mueller, Peter; Meier, Robert Johannes; Liebsch, Gregor; Jensen, Kai; Koop-Jakobsen, Ketil

2018-04-01

Root-mediated CO 2 uptake, O 2 release and their effects on O 2 and CO 2 dynamics in the rhizosphere of Lobelia dortmanna were investigated. Novel planar optode technology, imaging CO 2 and O 2 distribution around single roots, provided insights into the spatiotemporal patterns of gas exchange between roots, sediment and microbial community. In light, O 2 release and CO 2 uptake were pronounced, resulting in a distinct oxygenated zone (radius: c. 3 mm) and a CO 2 -depleted zone (radius: c. 2 mm) around roots. Simultaneously, however, microbial CO 2 production was stimulated within a larger zone around the roots (radius: c. 10 mm). This gave rise to a distinct pattern with a CO 2 minimum at the root surface and a CO 2 maximum c. 2 mm away from the root. In darkness, CO 2 uptake ceased, and the CO 2 -depleted zone disappeared within 2 h. By contrast, the oxygenated root zone remained even after 8 h, but diminished markedly over time. A tight coupling between photosynthetic processes and the spatiotemporal dynamics of O 2 and CO 2 in the rhizosphere of Lobelia was demonstrated, and we suggest that O 2 -induced stimulation of the microbial community in the sediment increases the supply of inorganic carbon for photosynthesis by building up a CO 2 reservoir in the rhizosphere. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

Identifying the transition to the maturation zone in three ecotypes of Arabidopsis thaliana roots.

PubMed

Cajero Sánchez, Wendy; García-Ponce, Berenice; Sánchez, María de la Paz; Álvarez-Buylla, Elena R; Garay-Arroyo, Adriana

2018-01-01

The Arabidopsis thaliana (hereafter Arabidopsis) root has become a useful model for studying how organ morphogenesis emerge from the coordination and balance of cell proliferation and differentiation, as both processes may be observed and quantified in the root at different stages of development. Hence, being able to objectively identify and delimit the different stages of root development has been very important. Up to now, three different zones along the longitudinal axis of the primary root of Arabidopsis, have been identified: the root apical meristematic zone (RAM) with two domains [the proliferative (PD) and the transition domain (TD)], the elongation zone (EZ) and the maturation zone (MZ). We previously reported a method to quantify the length of the cells of the meristematic and the elongation zone, as well as the boundaries or transitions between the root domains along the growing part of the Arabidopsis root. In this study, we provide a more accurate criterion to identify the MZ. Traditionally, the transition between the EZ to the MZ has been established by the emergence of the first root-hair bulge in the epidermis, because this emergence coincides with cell maturation in this cell type. But we have found here that after the emergence of the first root-hair bulge some cells continue to elongate and we have confirmed this in three different Arabidopsis ecotypes. We established the limit between the EZ and the MZ by looking for the closest cortical cell with a longer length than the average cell length of 10 cells after the cortical cell closest to the epidermal cell with the first root-hair bulge in these three ecotypes. In Col-0 and Ws this cell is four cells above the one with the root hair bulge and, in the Ler ecotype, this cell is five cells above. To unambiguously identifying the site at which cells stop elongating and attain their final length and fate at the MZ, we propose to calculate the length of completely elongated cortical cells counting 10 cells starting from the sixth cell above the cortical cell closest to the epidermal cell with the first root-hair bulge. We validated this proposal in the three ecotypes analyzed and consider that this proposal may aid at having a more objective way to characterize root phenotypes and compare among them.

Identifying the transition to the maturation zone in three ecotypes of Arabidopsis thaliana roots

PubMed Central

Cajero Sánchez, Wendy; García-Ponce, Berenice; Sánchez, María de la Paz; Álvarez-Buylla, Elena R.; Garay-Arroyo, Adriana

2018-01-01

ABSTRACT The Arabidopsis thaliana (hereafter Arabidopsis) root has become a useful model for studying how organ morphogenesis emerge from the coordination and balance of cell proliferation and differentiation, as both processes may be observed and quantified in the root at different stages of development. Hence, being able to objectively identify and delimit the different stages of root development has been very important. Up to now, three different zones along the longitudinal axis of the primary root of Arabidopsis, have been identified: the root apical meristematic zone (RAM) with two domains [the proliferative (PD) and the transition domain (TD)], the elongation zone (EZ) and the maturation zone (MZ). We previously reported a method to quantify the length of the cells of the meristematic and the elongation zone, as well as the boundaries or transitions between the root domains along the growing part of the Arabidopsis root. In this study, we provide a more accurate criterion to identify the MZ. Traditionally, the transition between the EZ to the MZ has been established by the emergence of the first root-hair bulge in the epidermis, because this emergence coincides with cell maturation in this cell type. But we have found here that after the emergence of the first root-hair bulge some cells continue to elongate and we have confirmed this in three different Arabidopsis ecotypes. We established the limit between the EZ and the MZ by looking for the closest cortical cell with a longer length than the average cell length of 10 cells after the cortical cell closest to the epidermal cell with the first root-hair bulge in these three ecotypes. In Col-0 and Ws this cell is four cells above the one with the root hair bulge and, in the Ler ecotype, this cell is five cells above. To unambiguously identifying the site at which cells stop elongating and attain their final length and fate at the MZ, we propose to calculate the length of completely elongated cortical cells counting 10 cells starting from the sixth cell above the cortical cell closest to the epidermal cell with the first root-hair bulge. We validated this proposal in the three ecotypes analyzed and consider that this proposal may aid at having a more objective way to characterize root phenotypes and compare among them. PMID:29497470

Petrological constraints on the recycling of mafic crystal mushes, magma ascent and intrusion of braided sills in the Torres del Paine mafic complex (Patagonia)

NASA Astrophysics Data System (ADS)

Leuthold, Julien; Müntener, Othmar; Baumgartner, Lukas; Putlitz, Benita

2014-05-01

Cumulate and crystal mush disruption and reactivation are difficult to recognise in coarse grained shallow plutonic rocks. Mafic minerals included in hornblende and zoned plagioclase provide snapshots of early crystallization and cumulate formation, but are difficult to interpret in terms of the dynamics of magma ascent and possible links between silicic and mafic rock emplacement. We will present the field relations, the microtextures and the mineral chemistry of the Miocene mafic sill complex of the Torres del Paine intrusive complex (Patagonia, Chile) and its sub-vertical feeder-zone. The mafic sill complex was built up by a succession of braided sills of shoshonitic and high-K calc-alkaline porphyritic hornblende-gabbro and fine grained monzodioritic sills. The mafic units were over-accreted over 41±11 ka, underplating the overlying granite. Local diapiric structures and felsic magma accumulation between sills indicate limited separation of intercumulus liquid from the mafic sills. Anhedral hornblende cores, with olivine + clinopyroxene ± plagioclase ± apatite inclusions, crystallized at temperatures >900°C and pressures of ~300 to ~500 MPa. The corresponding rims and monzodiorite matrix crystallized at <830°C, ~70 MPa. This abrupt compositional variation suggests stability and instability of hornblende during mafic roots recycling and subsequent decompression. The near lack of intercumulus crystals in the sub-vertical feeder zone layered gabbronorite and pyroxene-hornblende gabbronorite stocks testifies that melt is more efficiently extracted than in sills, resulting in a cumulate signature in the feeding system. The emplacement age of the sill complex topmost granitic unit is identical, within uncertainties, to the feeder zone mafic cumulates. Granitic liquids formed by AFC processes and were extracted at high temperature (T>950°C) from the middle crust reservoir to the emplacement level. We show that hornblende-plagioclase thermobarometry is a useful monitor for the determination of segregation conditions of granitic magmas from gabbroic crystal mushes, and for monitoring the evolution of shallow crustal magmatic crystallization, decompression and cooling.

Measuring and Modeling Root Distribution and Root Reinforcement in Forested Slopes for Slope Stability Calculations

NASA Astrophysics Data System (ADS)

Cohen, D.; Giadrossich, F.; Schwarz, M.; Vergani, C.

2016-12-01

Roots provide mechanical anchorage and reinforcement of soils on slopes. Roots also modify soil hydrological properties (soil moisture content, pore-water pressure, preferential flow paths) via subsurface flow path associated with root architecture, root density, and root-size distribution. Interactions of root-soil mechanical and hydrological processes are an important control of shallow landslide initiation during rainfall events and slope stability. Knowledge of root-distribution and root strength are key components to estimate slope stability in vegetated slopes and for the management of protection forest in steep mountainous area. We present data that show the importance of measuring root strength directly in the field and present methods for these measurements. These data indicate that the tensile force mobilized in roots depends on root elongation (a function of soil displacement), root size, and on whether roots break in tension of slip out of the soil. Measurements indicate that large lateral roots that cross tension cracks at the scarp are important for slope stability calculations owing to their large tensional resistance. These roots are often overlooked and when included, their strength is overestimated because extrapolated from measurements on small roots. We present planned field experiments that will measure directly the force held by roots of different sizes during the triggering of a shallow landslide by rainfall. These field data are then used in a model of root reinforcement based on fiber-bundle concepts that span different spacial scales, from a single root to the stand scale, and different time scales, from timber harvest to root decay. This model computes the strength of root bundles in tension and in compression and their effect on soil strength. Up-scaled to the stand the model yields the distribution of root reinforcement as a function of tree density, distance from tree, tree species and age with the objective of providing quantitative estimates of tree root reinforcement for best management practice of protection forests.

Field-scale study of the influence of differing remediation strategies on trace metal geochemistry in metal mine tailings from the Irish Midlands.

PubMed

Perkins, William T; Bird, Graham; Jacobs, Suzanne R; Devoy, Cora

2016-03-01

Mine tailings represent a globally significant source of potentially harmful elements (PHEs) to the environment. The management of large volumes of mine tailings represents a major challenge to the mining industry and environmental managers. This field-scale study evaluates the impact of two highly contrasting remediation approaches to the management and stabilisation of mine tailings. The geochemistry of the tailings, overlying amendment layers and vegetation are examined in the light of the different management approaches. Pseudo-total As, Cd and Pb concentrations and solid-state partitioning (speciation), determined via sequential extraction, were established for two Tailings Management Facilities (TMFs) in Ireland subjected to the following: (1) a 'walk-away' approach (Silvermines) and (2) application of an amendment layer (Galmoy). PHE concentrations in roots and herbage of grasses growing on the TMFs were also determined. Results identify very different PHE concentration profiles with depth through the TMFs and the impact of remediation approach on concentrations and their potential bioavailability in the rooting zone of grass species. Data also highlight the importance of choice of grass species in remediation approaches and the benefits of relatively shallow-rooting Agrostis capillaris and Festuca rubra varieties. In addition, data from the Galmoy TMF indicate the importance of regional soil geochemistry for interpreting the influence of the PHE geochemistry of capping and amendment layers applied to mine tailings.

Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.

PubMed

Qu, Lianghuan; Wu, Chunyan; Zhang, Fei; Wu, Yangyang; Fang, Chuanying; Jin, Cheng; Liu, Xianqing; Luo, Jie

2016-10-01

Pectin synthesis and modification are vital for plant development, although the underlying mechanisms are still not well understood. Here, we report the functional characterization of the OsTSD2 gene, which encodes a putative methyltransferase in rice. All three independent T-DNA insertion lines of OsTSD2 displayed dwarf phenotypes and serial alterations in different zones of the root. These alterations included abnormal cellular adhesion and schizogenous aerenchyma formation in the meristematic zone, inhibited root elongation in the elongation zone, and higher lateral root density in the mature zone. Immunofluorescence (with LM19) and Ruthenium Red staining of the roots showed that unesterified homogalacturonan (HG) was increased in Ostsd2 mutants. Biochemical analysis of cell wall pectin polysaccharides revealed that both the monosaccharide composition and the uronic acid content were decreased in Ostsd2 mutants. Increased endogenous ABA content and opposite roles performed by ABA and IAA in regulating cellular adhesion in the Ostsd2 mutants suggested that OsTSD2 is required for root development in rice through a pathway involving pectin synthesis/modification. A hypothesis to explain the relationship among OsTSD2, pectin methylesterification, and root development is proposed, based on pectin's function in regional cell extension/division in a zone-dependent manner. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Shallow seismic structure of Kunlun fault zone in northern Tibetan Plateau, China: Implications for the 2001 M s8.1 Kunlun earthquake

USGS Publications Warehouse

Wang, Chun-Yong; Mooney, W.D.; Ding, Z.; Yang, J.; Yao, Z.; Lou, H.

2009-01-01

The shallow seismic velocity structure of the Kunlun fault zone (KLFZ) was jointly deduced from seismic refraction profiling and the records of trapped waves that were excited by five explosions. The data were collected after the 2001 Kunlun M s8.1 earthquake in the northern Tibetan Plateau. Seismic phases for the in-line record sections (26 records up to a distance of 15 km) along the fault zone were analysed, and 1-D P- and S-wave velocity models of shallow crust within the fault zone were determined by using the seismic refraction method. Sixteen seismic stations were deployed along the off-line profile perpendicular to the fault zone. Fault-zone trapped waves appear clearly on the record sections, which were simulated with a 3-D finite difference algorithm. Quantitative analysis of the correlation coefficients of the synthetic and observed trapped waveforms indicates that the Kunlun fault-zone width is 300 m, and S-wave quality factor Q within the fault zone is 15. Significantly, S-wave velocities within the fault zone are reduced by 30-45 per cent from surrounding rocks to a depth of at least 1-2 km, while P-wave velocities are reduced by 7-20 per cent. A fault-zone with such P- and S-low velocities is an indication of high fluid pressure because Vs is affected more than Vp. The low-velocity and low-Q zone in the KLFZ model is the effect of multiple ruptures along the fault trace of the 2001 M s8.1 Kunlun earthquake. ?? 2009 The Authors Journal compilation ?? 2009 RAS.

A new view into the Cascadia subduction zone and volcanic arc: Implications for earthquake hazards along the Washington margin

USGS Publications Warehouse

Parsons, T.; Trehu, A.M.; Luetgert, J.H.; Miller, K.; Kilbride, F.; Wells, R.E.; Fisher, M.A.; Flueh, E.; ten Brink, Uri S.; Christensen, N.I.

1998-01-01

In light of suggestions that the Cascadia subduction margin may pose a significant seismic hazard for the highly populated Pacific Northwest region of the United States, the U.S. Geological Survey (USGS), the Research Center for Marine Geosciences (GEOMAR), and university collaborators collected and interpreted a 530-km-long wide-angle onshore-offshore seismic transect across the subduction zone and volcanic arc to study the major structures that contribute to seismogenic deformation. We observed (1) an increase in the dip of the Juan de Fuca slab from 2°–7° to 12° where it encounters a 20-km-thick block of the Siletz terrane or other accreted oceanic crust, (2) a distinct transition from Siletz crust into Cascade arc crust that coincides with the Mount St. Helens seismic zone, supporting the idea that the mafic Siletz block focuses seismic deformation at its edges, and (3) a crustal root (35–45 km deep) beneath the Cascade Range, with thinner crust (30–35 km) east of the volcanic arc beneath the Columbia Plateau flood basalt province. From the measured crustal structure and subduction geometry, we identify two zones that may concentrate future seismic activity: (1) a broad (because of the shallow dip), possibly locked part of the interplate contact that extends from ∼25 km depth beneath the coastline to perhaps as far west as the deformation front ∼120 km offshore and (2) a crustal zone at the eastern boundary between the Siletz terrane and the Cascade Range.

Mapping Inherited Fractures in the Critical Zone Using Seismic Anisotropy From Circular Surveys

NASA Astrophysics Data System (ADS)

Novitsky, Christopher G.; Holbrook, W. Steven; Carr, Bradley J.; Pasquet, Sylvain; Okaya, David; Flinchum, Brady A.

2018-04-01

Weathering and hydrological processes in Earth's shallow subsurface are influenced by inherited bedrock structures, such as bedding planes, faults, joints, and fractures. However, these structures are difficult to observe in soil-mantled landscapes. Steeply dipping structures with a dominant orientation are detectable by seismic anisotropy, with fast wave speeds along the strike of structures. We measured shallow ( 2-4 m) seismic anisotropy using "circle shots," geophones deployed in a circle around a central shot point, in a weathered granite terrain in the Laramie Range of Wyoming. The inferred remnant fracture orientations agree with brittle fracture orientations measured at tens of meters depth in boreholes, demonstrating that bedrock fractures persist through the weathering process into the shallow critical zone. Seismic anisotropy positively correlates with saprolite thickness, suggesting that inherited bedrock fractures may control saprolite thickness by providing preferential pathways for corrosive meteoric waters to access the deep critical zone.

Monitoring soil moisture patterns in alpine meadows using ground sensor networks and remote sensing techniques

NASA Astrophysics Data System (ADS)

Bertoldi, Giacomo; Brenner, Johannes; Notarnicola, Claudia; Greifeneder, Felix; Nicolini, Irene; Della Chiesa, Stefano; Niedrist, Georg; Tappeiner, Ulrike

2015-04-01

Soil moisture content (SMC) is a key factor for numerous processes, including runoff generation, groundwater recharge, evapotranspiration, soil respiration, and biological productivity. Understanding the controls on the spatial and temporal variability of SMC in mountain catchments is an essential step towards improving quantitative predictions of catchment hydrological processes and related ecosystem services. The interacting influences of precipitation, soil properties, vegetation, and topography on SMC and the influence of SMC patterns on runoff generation processes have been extensively investigated (Vereecken et al., 2014). However, in mountain areas, obtaining reliable SMC estimations is still challenging, because of the high variability in topography, soil and vegetation properties. In the last few years, there has been an increasing interest in the estimation of surface SMC at local scales. On the one hand, low cost wireless sensor networks provide high-resolution SMC time series. On the other hand, active remote sensing microwave techniques, such as Synthetic Aperture Radars (SARs), show promising results (Bertoldi et al. 2014). As these data provide continuous coverage of large spatial extents with high spatial resolution (10-20 m), they are particularly in demand for mountain areas. However, there are still limitations related to the fact that the SAR signal can penetrate only a few centimeters in the soil. Moreover, the signal is strongly influenced by vegetation, surface roughness and topography. In this contribution, we analyse the spatial and temporal dynamics of surface and root-zone SMC (2.5 - 5 - 25 cm depth) of alpine meadows and pastures in the Long Term Ecological Research (LTER) Area Mazia Valley (South Tyrol - Italy) with different techniques: (I) a network of 18 stations; (II) field campaigns with mobile ground sensors; (III) 20-m resolution RADARSAT2 SAR images; (IV) numerical simulations using the GEOtop hydrological model (Rigon et al., 2006; Endrizzi et al., 2014). The objective of this work is to understand the physical controls of the observed SCM patterns. In particular, we want to investigate: • How the SMC signal propagates with depth, to understand the capability of SAR surface SMC observations to predict root-zone SMC. • The role of land management and vegetation properties with respect to soil and bedrock properties in determining SMC spatial variability and temporal patterns. In this context, we use the GEOtop model to understand if a relationship exists between the observed SMC patterns and the underlying runoff generation processes. Results show that meadows and pastures have different behaviours. Meadows are in general wetter because of irrigation and the presence of soils with higher organic content and higher water holding capacity. Moreover, surface and root depth SCM dynamics are correlated. In contrast, pastures are drier, with lower vegetation density and more compact soils due animal trampling. Because of shallow soils and impermeable bedrock, root zone SMC shows a different behaviour with respect to the surface, with occurrence of sub-surface saturation excess, as verified from numerical experiments performed with the hydrological model. Results suggest how SAR retrieved surface SMC can be used to extrapolate root zone SMC, when soil properties are homogenous and differences in vegetation density are properly accounted with a robust retrieval processes (Pasolli et al., in press 2015). However, in situations characterized by shallow subsurface saturation excess flow, a more sophisticated modelling approach is required to estimate root zone SMC using remote sensing observations. Bertoldi, G., Della, S., Notarnicola, C., Pasolli, L., Niedrist, G., & Tappeiner, U. (2014). Estimation of soil moisture patterns in mountain grasslands by means of SAR RADARSAT2 images and hydrological modeling, 516, 245-257. doi:10.1016/j.jhydrol.2014.02.018 Endrizzi, S., Gruber, S., Dall'Amico, M., & Rigon, R. (2014). GEOtop 2.0: simulating the combined energy and water balance at and below the land surface accounting for soil freezing, snow cover and terrain effects. Geoscientific Model Development, 7(6), 2831-2857. doi:10.5194/gmd-7-2831-2014 Pasolli, L., Notarnicola, C., Bertoldi, G., Bruzzone, L., Remegaldo, R., Niedrist, G, Della Chiesa S., Tappeiner, U., Zebisch, M. (2014): Multi-scale assessment of soil moisture variability in mountain areas by using active radar images. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, in press 2015. Rigon, R., Bertoldi, G., & Over, T. M. (2006). GEOtop: A Distributed Hydrological Model with Coupled Water and Energy Budgets. Journal of Hydrometeorology, 7, 371-388. Vereecken, H., Huisman, J. A., Pachepsky, Y., Montzka, C., van der Kruk, J., Bogena, H., … Vanderborght, J. (2014). On the spatio-temporal dynamics of soil moisture at the field scale. Journal of Hydrology. doi:http://dx.doi.org/10.1016/j.jhydrol.2013.11.061

Kinematics and depth-integrated terms in surf zone waves from laboratory measurement

NASA Astrophysics Data System (ADS)

Stansby, Peter K.; Feng, Tong

2005-04-01

Kinematics of nominally periodic surf zone waves have been measured in the laboratory using LDA (laser Doppler anemometry), above trough level as well as below, for weakly plunging breakers transforming into bores in shallower water. The aim was to determine, through phase- or ensemble-averaging, periodic flow structures in a two-dimensional vertical plane, from large-scale down to small-scale vortical structures. Coherent multiple vortical structures were evident at the initiation of breaking, becoming elongated along the surface during bore propagation. The initial region is likely to become more extensive as waves become more strongly plunging and could explain the difference in turbulence characteristics between plunging and spilling breakers observed elsewhere. Comparison of vorticity magnitudes with hydraulic-jump measurements showed some similarities during the initial stages of breaking, but these quickly grew less as breaking progressed into shallower water. Period-averaged kinematics and vorticity were also obtained showing shoreward mass transport above trough level and undertow below, with a thick layer of vorticity at trough level and a thin layer of vorticity of opposite rotation at the bed. There were also concentrated regions of mean vorticity near the end of the plunging region. Residual turbulence of relatively high frequency was presented as Reynolds stresses, showing marked anisotrophy. Dynamic pressure (pressure minus its hydrostatic component) was determined from the kinematics. The magnitudes of different effects were evaluated through the depth-integrated Reynolds-averaged Navier-Stokes (RANS) equations, which may be reduced to nine terms (the standard inviscid terms of the shallow-water equations conserving mass and momentum with hydrostatic pressure, and six additional terms), assuming that the complex, often aerated, free surface is treated as a simple interface. All terms were evaluated, assuming that a space/time transformation was justified with a slowly varying phase speed, and the net balance was always small in relation to the maxima of the larger terms. Terms due to dynamic pressure and vertical dispersion (due to the vertical variation of velocity) were as significant as the three terms in the inviscid shallow-water equations; terms involving residual turbulence were insignificant. The r.m.s. (root mean square) variation of each along the slope is highly irregular, with the inertia term due to (Eulerian) acceleration always greatest. This is consistent with complex, though repetitive, coherent structures. Modelling the flow with the shallow-water equations, using the surface elevation variation at the break point as input, nevertheless gave a good prediction of the wave height variation up the slope.

Tree root intrusion in sewer systems: A review of extent and costs

Treesearch

T.B. Randrup; E.G. McPherson; L.R. Costello

2001-01-01

Interference between trees and sewer systems is likely to occur in old systems and in cracked pipes. Factors that contribute to damage include old pipes with joints, shallow pipes, small-dimension pipes, and fast-growing tree species. Because roots are reported to cause >50% of all sewer blockages, costs associated with root removal from sewers is substantial. In...

Do limited cold tolerance and shallow depth of roots contribute to yellow-cedar decline?

Treesearch

Paul G. Schaberg; David V. D' Amore; Paul E. Hennon; Joshua M. Halman; Gary J. Hawley

2011-01-01

It has been proposed that yellow-cedar (Callitropsis nootkatensis) decline is initiated by the freezing injury of roots when soils freeze during times of limited snowpack. To explain the unique susceptibility of yellow-cedar in contrast to co-occurring species, yellow-cedar roots would need to be less cold tolerant and/or more concentrated in upper...

Tests for Transmission of Prunus Necrotic Ringspot and Two Nepoviruses by Criconemella xenoplax

PubMed Central

Yuan, W-Q.; Barnett, O. W.; Westcott, S. W.; Scott, S. W.

1990-01-01

In two of three trials, detectable color reactions in ELISA for Prunus necrotic ringspot virus (PNRSV) were observed for Criconemella xenoplax handpicked from the root zone of infected peach trees. Criconemella xenoplax (500/pot) handpicked from root zones of peach trees infected with PNRSV failed to transmit the virus to cucumber or peach seedlings. The nematode also failed to transmit tomato ringspot (TomRSV) or tobacco ringspot viruses between cucumbers, although Xiphinema americanum transmitted TomRSV under the same conditions. Plants of peach, cucumber, Chenopodium quinoa, and Catharanthus roseus were not infected by PNRSV when grown in soil containing C. xenoplax collected from root zones of PNRSV-infected trees. Shirofugen cherry scions budded on Mazzard cherry seedling rootstocks remained symptomless when transplanted into root zones of PNRSV-infected trees. Virus transmission was not detected by ELISA when C. xenoplax individuals were observed to feed on cucumber root explants that were infected with PNRSV and subsequently fed on roots of Prunus besseyi in agar cultures. Even if virus transmission by C. xenoplax occurs via contamination rather than by a specific mechanism, it must be rare. PMID:19287748

Tests for Transmission of Prunus Necrotic Ringspot and Two Nepoviruses by Criconemella xenoplax.

PubMed

Yuan, W Q; Barnett, O W; Westcott, S W; Scott, S W

1990-10-01

In two of three trials, detectable color reactions in ELISA for Prunus necrotic ringspot virus (PNRSV) were observed for Criconemella xenoplax handpicked from the root zone of infected peach trees. Criconemella xenoplax (500/pot) handpicked from root zones of peach trees infected with PNRSV failed to transmit the virus to cucumber or peach seedlings. The nematode also failed to transmit tomato ringspot (TomRSV) or tobacco ringspot viruses between cucumbers, although Xiphinema americanum transmitted TomRSV under the same conditions. Plants of peach, cucumber, Chenopodium quinoa, and Catharanthus roseus were not infected by PNRSV when grown in soil containing C. xenoplax collected from root zones of PNRSV-infected trees. Shirofugen cherry scions budded on Mazzard cherry seedling rootstocks remained symptomless when transplanted into root zones of PNRSV-infected trees. Virus transmission was not detected by ELISA when C. xenoplax individuals were observed to feed on cucumber root explants that were infected with PNRSV and subsequently fed on roots of Prunus besseyi in agar cultures. Even if virus transmission by C. xenoplax occurs via contamination rather than by a specific mechanism, it must be rare.

HYDRAULIC REDISTRIBUTION IN THE PACIFIC NORTHWEST: TWEAKING THE SYSTEM

EPA Science Inventory

Hydraulic redistribution (HR) has recently been documented in Pacific Northwest forests, but the controls governing this process and its importance to shallow-rooted species are poorly understood. Our objective in this study was to manipulate the soil-root system to tease apart ...

Evidence of root zone hypoxia in Brassica rapa L. grown in microgravity.

PubMed

Stout, S C; Porterfield, D M; Briarty, L G; Kuang, A; Musgrave, M E

2001-03-01

A series of experiments was conducted aboard the U.S. space shuttle and the Mir space station to evaluate microgravity-induced root zone hypoxia in rapid-cycling Brassica (Brassica rapa L.), using both root and foliar indicators of low-oxygen stress to the root zone. Root systems from two groups of plants 15 and 30 d after planting, grown in a phenolic foam nutrient delivery system on the shuttle (STS-87), were harvested and fixed for microscopy or frozen for enzyme assays immediately postflight or following a ground-based control. Activities of fermentative enzymes were measured as indicators of root zone hypoxia and metabolism. Following 16 d of microgravity, ADH (alcohol dehydrogenase) activity was increased in the spaceflight roots 47% and 475% in the 15-d-old and 30-d-old plants, respectively, relative to the ground control. Cytochemical localization showed ADH activity in only the root tips of the space-grown plants. Shoots from plants that were grown from seed in flight in a particulate medium on the Mir station were harvested at 13 d after planting and quick-frozen and stored in flight in a gaseous nitrogen freezer or chemically fixed in flight for subsequent microscopy. When compared to material from a high-fidelity ground control, concentrations of shoot sucrose and total soluble carbohydrate were significantly greater in the spaceflight treatment according to enzymatic carbohydrate analysis. Stereological analysis of micrographs of sections from leaf and cotyledon tissue fixed in flight and compared with ground controls indicated no changes in the volume of protoplast, cell wall, and intercellular space in parenchyma cells. Within the protoplasm, the volume occupied by starch was threefold higher in the spaceflight than in the ground control, with a concomitant decrease in vacuolar volume in the spaceflight treatment. Both induction of fermentative enzyme activity in roots and accumulation of carbohydrates in foliage have been repeatedly shown to occur in response to root zone oxygen deprivation. These results indicate that root zone hypoxia is a persistent challenge in spaceflight plant growth experiments and may be caused by microgravity-induced changes in fluid and gas distribution.

Evidence of root zone hypoxia in Brassica rapa L. grown in microgravity

NASA Technical Reports Server (NTRS)

Stout, S. C.; Porterfield, D. M.; Briarty, L. G.; Kuang, A.; Musgrave, M. E.

2001-01-01

A series of experiments was conducted aboard the U.S. space shuttle and the Mir space station to evaluate microgravity-induced root zone hypoxia in rapid-cycling Brassica (Brassica rapa L.), using both root and foliar indicators of low-oxygen stress to the root zone. Root systems from two groups of plants 15 and 30 d after planting, grown in a phenolic foam nutrient delivery system on the shuttle (STS-87), were harvested and fixed for microscopy or frozen for enzyme assays immediately postflight or following a ground-based control. Activities of fermentative enzymes were measured as indicators of root zone hypoxia and metabolism. Following 16 d of microgravity, ADH (alcohol dehydrogenase) activity was increased in the spaceflight roots 47% and 475% in the 15-d-old and 30-d-old plants, respectively, relative to the ground control. Cytochemical localization showed ADH activity in only the root tips of the space-grown plants. Shoots from plants that were grown from seed in flight in a particulate medium on the Mir station were harvested at 13 d after planting and quick-frozen and stored in flight in a gaseous nitrogen freezer or chemically fixed in flight for subsequent microscopy. When compared to material from a high-fidelity ground control, concentrations of shoot sucrose and total soluble carbohydrate were significantly greater in the spaceflight treatment according to enzymatic carbohydrate analysis. Stereological analysis of micrographs of sections from leaf and cotyledon tissue fixed in flight and compared with ground controls indicated no changes in the volume of protoplast, cell wall, and intercellular space in parenchyma cells. Within the protoplasm, the volume occupied by starch was threefold higher in the spaceflight than in the ground control, with a concomitant decrease in vacuolar volume in the spaceflight treatment. Both induction of fermentative enzyme activity in roots and accumulation of carbohydrates in foliage have been repeatedly shown to occur in response to root zone oxygen deprivation. These results indicate that root zone hypoxia is a persistent challenge in spaceflight plant growth experiments and may be caused by microgravity-induced changes in fluid and gas distribution.

Quantifying the Variation in Shear Zone Character with Depth: a Case Study from the Simplon Shear Zone, Central Alps

NASA Astrophysics Data System (ADS)

Cawood, T. K.; Platt, J. P.

2017-12-01

A widely-accepted model for the rheology of crustal-scale shear zones states that they comprise distributed strain at depth, in wide, high-temperature shear zones, which narrow to more localized, high-strain zones at lower temperature and shallower crustal levels. We test and quantify this model by investigating how the width, stress, temperature and deformation mechanisms change with depth in the Simplon Shear Zone (SSZ). The SSZ marks a major tectonic boundary in the central Alps, where normal-sense motion and rapid exhumation of the footwall have preserved evidence of older, deeper deformation in rocks progressively further into the currently-exposed footwall. As such, microstructures further from the brittle fault (which represents the most localized, most recently-active part of the SSZ) represent earlier, higher- temperature deformation from deeper crustal levels, while rocks closer to the fault have been overprinted by successively later, cooler deformation at shallower depths. This study uses field mapping and microstructural studies to identify zones representing deformation at various crustal levels, and characterize each in terms of zone width (representing width of the shear zone at that time and depth) and dominant deformation mechanism. In addition, quartz- (by Electron Backscatter Diffraction, EBSD) and feldspar grain size (measured optically) piezometry are used to calculate the flow stress for each zone, while the Ti-in-quartz thermometer (TitaniQ) is used to calculate the corresponding temperature of deformation. We document the presence of a broad zone in which quartz is recrystallized by the Grain Boundary Migration (GBM) mechanism and feldspar by Subgrain Rotation (SGR), which represents the broad, deep zone of deformation occurring at relatively high temperatures and low stresses. In map view, this transitions to successively narrower zones, respectively characterized by quartz SGR and feldspar Bulge Nucleation (BLG); quartz BLG and brittle deformation of feldspar; and finally, a zone of generally brittle deformation. These zones represent deformation in progressively narrower regions at shallower depths, under lower temperatures and higher stresses.

CO2/Brine transport into shallow aquifers along fault zones.

PubMed

Keating, Elizabeth H; Newell, Dennis L; Viswanathan, Hari; Carey, J W; Zyvoloski, G; Pawar, Rajesh

2013-01-02

Unintended release of CO(2) from carbon sequestration reservoirs poses a well-recognized risk to groundwater quality. Research has largely focused on in situ CO(2)-induced pH depression and subsequent trace metal mobilization. In this paper we focus on a second mechanism: upward intrusion of displaced brine or brackish-water into a shallow aquifer as a result of CO(2) injection. Studies of two natural analog sites provide insights into physical and chemical mechanisms controlling both brackish water and CO(2) intrusion into shallow aquifers along fault zones. At the Chimayó, New Mexico site, shallow groundwater near the fault is enriched in CO(2) and, in some places, salinity is significantly elevated. In contrast, at the Springerville, Arizona site CO(2) is leaking upward through brine aquifers but does not appear to be increasing salinity in the shallow aquifer. Using multiphase transport simulations we show conditions under which significant CO(2) can be transported through deep brine aquifers into shallow layers. Only a subset of these conditions favor entrainment of salinity into the shallow aquifer: high aspect-ratio leakage pathways and viscous coupling between the fluid phases. Recognition of the conditions under which salinity is favored to be cotransported with CO(2) into shallow aquifers will be important in environmental risk assessments.

Hydraulic responses to extreme drought conditions in three co-dominant tree species in shallow soil over bedrock.

PubMed

Kukowski, Kelly R; Schwinning, Susanne; Schwartz, Benjamin F

2013-04-01

An important component of the hydrological niche involves the partitioning of water sources, but in landscapes characterized by shallow soils over fractured bedrock, root growth is highly constrained. We conducted a study to determine how physical constraints in the root zone affected the water use of three tree species that commonly coexist on the Edwards Plateau of central Texas; cedar elm (Ulmus crassifolia), live oak (Quercus fusiformis), and Ashe juniper (Juniperus ashei). The year of the study was unusually dry; minimum predawn water potentials measured in August were -8 MPa in juniper, less than -8 MPa in elm, and -5 MPa in oak. All year long, species used nearly identical water sources, based on stable isotope analysis of stem water. Sap flow velocities began to decline simultaneously in May, but the rate of decline was fastest for oak and slowest for juniper. Thus, species partitioned water by time when they could not partition water by source. Juniper lost 15-30 % of its stem hydraulic conductivity, while percent loss for oak was 70-75 %, and 90 % for elm. There was no tree mortality in the year of the study, but 2 years later, after an even more severe drought in 2011, we recorded 34, 14, 6, and 1 % mortality among oak, elm, juniper, and Texas persimmon (Diospyros texana), respectively. Among the study species, mortality rates ranked in the same order as the rate of sap flow decline in 2009. Among the angiosperms, mortality rates correlated with wood density, lending further support to the hypothesis that species with more cavitation-resistant xylem are more susceptible to catastrophic hydraulic failure under acute drought.

Shallow depth of seismogenic coupling in southern Mexico: implications for the maximum size of earthquakes in the subduction zone

NASA Astrophysics Data System (ADS)

Suárez, Gerardo; Sánchez, Osvaldo

1996-01-01

Studies of locally recorded microearthquakes and the centroidal depths of the largest earthquakes analyzed using teleseismic data show that the maximum depth of thrust faulting along the Mexican subduction zone is anomalously shallow. This observed maximum depth of about 25 ± 5 km is about half of that observed in most subduction zones of the world. A leveling line that crosses the rupture zone of the 19 September 1985 Michoacan event was revisited after the earthquake and it shows anomalously low deformation during the earthquake. The comparison between the observed coseismic uplift and dislocation models of the seismogenic interplate contact that extend to depths ranging from 20 to 40 km shows that the maximum depth at which seismic slip took place is about 20 km. This unusually shallow and narrow zone of seismogenic coupling apparently results in the occurrence of thrust events along the Mexican subduction zone that are smaller than would be expected for a trench where a relatively young slab subducts at a rapid rate of relative motion. A comparison with the Chilean subduction zone shows that the plate interface in Mexico is half that in Chile, not only in the down-dip extent of the seismogenic zone of plate contact, but also in the distance of the trench from the coast and in the thickness of the upper continental plate. It appears that the narrow plate contact produced by this particular plate geometry in Mexico is the controlling variable defining the size of the largest characteristic earthquakes in the Mexican subduction zone.

Shallow subsurface structure of the Wasatch fault, Provo segment, Utah, from integrated compressional and shear-wave seismic reflection profiles with implications for fault structure and development

USGS Publications Warehouse

McBride, J.H.; Stephenson, W.J.; Williams, R.A.; Odum, J.K.; Worley, D.M.; South, J.V.; Brinkerhoff, A.R.; Keach, R.W.; Okojie-Ayoro, A. O.

2010-01-01

Integrated vibroseis compressional and experimental hammer-source, shear-wave, seismic reflection profiles across the Provo segment of the Wasatch fault zone in Utah reveal near-surface and shallow bedrock structures caused by geologically recent deformation. Combining information from the seismic surveys, geologic mapping, terrain analysis, and previous seismic first-arrival modeling provides a well-constrained cross section of the upper ~500 m of the subsurface. Faults are mapped from the surface, through shallow, poorly consolidated deltaic sediments, and cutting through a rigid bedrock surface. The new seismic data are used to test hypotheses on changing fault orientation with depth, the number of subsidiary faults within the fault zone and the width of the fault zone, and the utility of integrating separate elastic methods to provide information on a complex structural zone. Although previous surface mapping has indicated only a few faults, the seismic section shows a wider and more complex deformation zone with both synthetic and antithetic normal faults. Our study demonstrates the usefulness of a combined shallow and deeper penetrating geophysical survey, integrated with detailed geologic mapping to constrain subsurface fault structure. Due to the complexity of the fault zone, accurate seismic velocity information is essential and was obtained from a first-break tomography model. The new constraints on fault geometry can be used to refine estimates of vertical versus lateral tectonic movements and to improve seismic hazard assessment along the Wasatch fault through an urban area. We suggest that earthquake-hazard assessments made without seismic reflection imaging may be biased by the previous mapping of too few faults. ?? 2010 Geological Society of America.

Seismic evidence for deep fluid circulation in the overriding plate of subduction zones

NASA Astrophysics Data System (ADS)

Tauzin, B.; Reynard, B.; Bodin, T.; Perrillat, J. P.; Debayle, E.

2015-12-01

In subduction zones, non-volcanic tremors are associated with fluid circulations (Obara, 2002). Their sources are often located on the interplate boundary (Rogers and Dragert, 2003; Shelly et al, 2006; La Rocca, 2009), consistent with fluids released by the dehydration of subducted plates (Hacker et al., 2003). Reports of tremors in the overriding continental crust of several subduction zones in the world (Kao et al., 2005; Payero et al., 2008; Ide, 2012) suggest fluid circulation at shallower depths but potential fluid paths are poorly documented. Here we obtained seismic observations from receiver functions that evidence the close association between the shallow tremor zone, electrical conductivity, and tectonic features of the Cascadia overriding plate. A seismic discontinuity near 15 km depth in the crust of the overriding North American plate is attributed to the Conrad discontinuity. This interface is segmented, and its interruption is spatially correlated with conductive regions and shallow swarms of seismicity and non-volcanic tremors. These observations suggest that shallow fluid circulation, tremors and seismicity are controlled by fault zones limiting blocks of accreted terranes in the overriding plate (Brudzinski and Allen, 2007). These zones constitute fluid "escape" routes that may contribute unloading fluid pressure on the megathrust. Obara, K. (2002). Science, 296, 1679-1681. Rogers, G., & Dragert, H. (2003). Science, 300, 1942-1943. Shelly, D. R., et al. (2006). Nature, 442, 188-191. La Rocca, M., et al. (2009). Science, 323, 620-623. Kao, H., et al. (2005). Nature, 436, 841-844. Payero, J. S., et al. (2008). Geophysical Research Letters, 35. Ide, S. (2012). Journal of Geophysical Research: Solid Earth, 117. Brudzinski, M. R., & Allen, R. M. (2007). Geology, 35, 907-910.

Breakdown of middle lamella pectin by (●) OH during rapid abscission in Azolla.

PubMed

Yamada, Yoshiya; Koibuchi, Mizuki; Miyamoto, Kensuke; Ueda, Junichi; Uheda, Eiji

2015-08-01

Azolla, a small water fern, abscises its roots and branches within 30 min upon treatment with various stresses. This study was conducted to test whether, in the rapid abscission that occurs in Azolla, breakdown of wall components of abscission zone cells by (●) OH is involved. Experimentally generated (●) OH caused the rapid separation of abscission zone cells from detached roots and the rapid shedding of roots from whole plants. Electron microscopic observations revealed that (●) OH rapidly and selectively dissolved a well-developed middle lamella between abscission zone cells and resultantly caused rapid cell separation and shedding. Treatment of abscission zones of Impatiens leaf petiole with (●) OH also accelerated the separation of abscission zone cells. However, compared with that of Azolla roots, accelerative effects in Impatiens were weak. A large amount of (●) OH was cytochemically detected in abscission zone cells both of Azolla roots and of Impatiens leaf petioles. These results suggest that (●) OH is involved in the cell separation process not only in the rapid abscission in Azolla but also in the abscission of Impatiens. However, for rapid abscission to occur, a well-developed middle lamella, a unique structure, which is sensitive to the attack of (●) OH, might be needed. © 2015 John Wiley & Sons Ltd.

A review of the regional geophysics of the Arizona Transition Zone

NASA Technical Reports Server (NTRS)

Hendricks, J. D.; Plescia, J. B.

1991-01-01

A review of existing geophysical information and new data presented in this special section indicate that major changes in crustal properties between the Basin and Range and Colorado Plateau occur in, or directly adjacent to, the region defined as the Arizona Transition Zone. Although this region was designated on a physiographic basis, studies indicate that it is also the geophysical transition between adjoining provinces. The Transition Zone displays anomalous crustal and upper mantle seismic properties, shallow Curie isotherms, high heat flow, and steep down-to-the-plateau Bouguer gravity gradients. Seismic and gravity studies suggest that the change in crustal thickness, from thin crust in the Basin and Range to thick crust in the Colorado Plateau, may occur as a series of steps rather than a planar surface. Anomalous P wave velocities, high heat flow, shallow Curie isotherms, and results of gravity modeling suggest that the upper mantle is heterogeneous in this region. A relatively shallow asthenosphere beneath the Basin and Range and Transition Zone contrasted with a thick lithosphere beneath the Colorado Plateau would be one explanation that would satisfy these geophysical observations.

Selection of root-zone media for higher plant cultivation in space.

PubMed

Guo, Shuang-sheng; Ai, Wei-dang; Zhao, Cheng-jian; Han, Li-jun; Wang, Jian-xiao

2004-04-01

To investigate the cultivating effects of several mineral matters used as root-zone media for higher plant growth in space. Four kinds of artificial and natural mineral matters were used as plant root-zone media based on lots of investigation and analysis. Nutrient liquid was delivered into the media by a long capillary material, and roots of plants obtained nutrition and water from the media. The related parameters such as plant height and photosynthetic efficiency were measured and analyzed. The growing effect in a mixture of coarse and fine ceramic particles with equal quantity proportion was the best, that in fine ceramic particles was the second best, that in clinoptilolite particles was the third and that in diorite particles was the last. The mixture of coarse and fine ceramic particles with equal quantity possesses not only fine capillary action, but also good aerating ability, and therefore is capable of being utilized as an effective root-zone media for higher plants intended to be grown in space.

In what root-zone N concentration does nitrate start to leach significantly? A reasonable answer from modeling Mediterranean field data and closed root-zone experiments

NASA Astrophysics Data System (ADS)

Kurtzman, D.; Kanner, B.; Levy, Y.; Shapira, R. H.; Bar-Tal, A.

2017-12-01

Closed-root-zone experiments (e.g. pots, lyzimeters) reveal in many cases a mineral-nitrogen (N) concentration from which the root-N-uptake efficiency reduces significantly and nitrate leaching below the root-zone increases dramatically. A les-direct way to reveal this threshold concentration in agricultural fields is to calibrate N-transport models of the unsaturated zone to nitrate data of the deep samples (under the root-zone) by fitting the threshold concentration of the nitrate-uptake function. Independent research efforts of these two types in light soils where nitrate problems in underlying aquifers are common reviled: 1) that the threshold exists for most crops (filed, vegetables and orchards); 2) nice agreement on the threshold value between the two very different research methodologies; and 3) the threshold lies within 20-50 mg-N/L. Focusing on being below the threshold is a relatively simple aim in the way to maintain intensive agriculture with limited effects on the nitrate concentration in the underlying water resource. Our experience show that in some crops this threshold coincides with the end-of-rise of the N-yield curve (e.g. corn); in this case, it is relatively easy to convince farmers to fertilize below threshold. In other crops, although significant N is lost to leaching the crop can still use higher N concentration to increase yield (e.g. potato).

Analysis of water application efficiency and emission uniformity of drip irrigation systems based on space-time analysis of soil moisture patterns in soils

NASA Astrophysics Data System (ADS)

Shabeeb, Ahmeed; Taha, Uday; dragonetti, giovanna; Lamaddalena, Nicola; Coppola, Antonio

2016-04-01

In order to evaluate how efficiently and uniformly drip irrigation systems can deliver water to emitters distributed around a field, we need some methods for measuring/calculating water application efficiency (WAE) and emission uniformity (EU). In general, the calculation of the WAE and of other efficiency indices requires the measurement of the water stored in the root zone. Measuring water storage in soils allows directly saying how much water a given location of the field retains having received a given amount of irrigation water. And yet, due to the difficulties of measuring water content variability under an irrigation system at field scale, it is quite common using EU as a proxy indicator of the irrigation performance. This implicitly means assuming that the uniformity of water application is immediately reflected in an uniformity of water stored in the root zone. In other words, that if a site receive more water it will store more water. Nevertheless, due to the heterogeneity of soil hydrological properties the same EU may correspond to very different distributions of water stored in the soil root zone. 1) In the case of isolated drippers, the storages measured in the soil root zone layer shortly after an irrigation event may be or not different from the water height applied at the surface depending on the vertical/horizontal development of the wetted bulbs. Specifically, in the case of dominant horizontal spreading the water storage is expected to reflect the distribution of water applied at the surface. To the contrary, in the case of relatively significant vertical spreading, deep percolation fluxes (fluxes leaving the root zone) may well induce water storages in the root zone significantly different from the water applied at the surface. 2) The drippers and laterals are close enough that the wetted bulbs below adjacent drippers may interact. In this case, lateral fluxes in the soil may well induce water storages in the root zone which may be significantly uncorrelated with the uniformity of the water applied at the surface. In both the cases, the size of lateral fluxes compared to the vertical ones throughout the rooting zone depends, besides the soil hydraulic properties, on the amount of water delivered to the soil. Larger water applications produce greater spreading, but in both the horizontal and vertical directions. Increased vertical spreading may be undesirable because water moving below the active root zone can result in wasted water, loss of nutrients, and groundwater pollution.

Geohydrology, water quality, and nitrogen geochemistry in the saturated and unsaturated zones beneath various land uses, Riverside and San Bernardino counties, California, 1991-93

USGS Publications Warehouse

Rees, Terry F.; Bright, Daniel J.; Fay, Ronald G.; Christensen, Allen H.; Anders, Robert; Baharie, Brian S.; Land, Michael T.

1995-01-01

The U.S. Geological Survey, in cooperation with the Eastern Municipal Water District, the Metropolitan Water District of Southern California, and the Orange County Water District, has completed a detailed study of the Hemet groundwater basin. The quantity of ground water stored in the basin in August 1992 is estimated to be 327,000 acre-feet. Dissolved-solids concentration ranged from 380 to 700 mg/L (milligrams per liter), except in small areas where the concentration exceeded 1,000 mg/L. Nitrate concentrations exceeded the U.S. Environmental Protection Agency Maximum Contaminant Level (MCL) of 10 mg/L nitrate (as nitrogen) in the southeastern part of the basin, in the Domenigoni Valley area, and beneath a dairy in the Diamond Valley area. Seven sites representing selected land uses-- residential, turf grass irrigated with reclaimed water, citrus grove, irrigated farm, poultry farm, and dairy (two sites)--were selected for detailed study of nitrogen geochemistry in the unsaturated zone. For all land uses, nitrate was the dominant nitrogen species in the unsaturated zone.Although nitrate was seasonally present in the shallow unsaturated zone beneath the residential site, it was absent at moderate depths, suggesting negligible migration of nitrate from the surface at this time. Microbial denitrification probably is occurring in the shallow unsaturated zone. High nitrate concentrations in the deep unsaturated zone (greater than 100 ft) suggest either significantly higher nitrate loading at some time in the past, or lateral movement of nitrate at depth. Nitrate also is seasonally present in the shallow unsaturated zone beneath the reclaimed-water site, and (in contrast with the residential site), nitrate is perennially present in the deeper unsaturated zone. Microbial denitrification in the unsaturated zone and in the capillary fringe above the water table decreases the concentrations of nitrate in pore water to below the MCL before reaching the water table.Pore water in the unsaturated zone beneath the citrus grove site contains very high concentrations of nitrate. Even though there are zones of microbial denitrification, nitrate seems to be migrating downward to the water table. The presence of a shallow perched-water zone beneath the irrigated-farm site prevents the vertical movement of nitrate from the surface to the regional water table. Above the perched zone, nitrate concentrations in the unsaturated zone are variable, ranging from below the MCL to four times the MCL. Periodically, nitrate is flushed from the shallow unsaturated zone to the perched-water zone. The unsaturated zone pore-moisture quality could not be adequately addressed because of the very dry conditions in the unsaturated zone beneath the poultry-farm site. Surficial clay deposits prevent water from percolating downward.At the two dairy sites, nitrate loading in pore water at the surface was very high, as great as 7,000 mg/L. Microbial denitrification in the unsaturated zone causes such concentrations to decrease rapidly with depth. At a depth of 20 ft, nitrate concentration was less than 100 mg/L. In areas where the depth to water is less than 20 ft, nitrate loading to ground water can be very high, whereas in areas where depth to water is greater than 100 ft, most of the nitrate is microbially removed before reaching the water table.

50 CFR 85.11 - Definitions.

Code of Federal Regulations, 2011 CFR

2011-10-01

..., their connecting waters, harbors, roadsteads, and estuary-type areas such as bays, shallows, and marshes... sea water, including sounds, bays, lagoons, bayous, ponds, and estuaries. Coastal zone. Coastal zone...

50 CFR 85.11 - Definitions.

Code of Federal Regulations, 2012 CFR

2012-10-01

..., their connecting waters, harbors, roadsteads, and estuary-type areas such as bays, shallows, and marshes... sea water, including sounds, bays, lagoons, bayous, ponds, and estuaries. Coastal zone. Coastal zone...

Trait-based characterisation of soil exploitation strategies of banana, weeds and cover plant species

PubMed Central

Tardy, Florence; Damour, Gaëlle; Dorel, Marc; Moreau, Delphine

2017-01-01

Cover plants can be introduced in cropping systems to provide agroecosystem services, including weed control via competition for resources. There is currently no consensus on how to identify the best cover plant species, while trait-based approaches are promising for screening plant species due to their agroecosystem service provision potential. This study was carried out to characterize soil exploitation strategies of cover plant species in banana agroecosystems using a trait-based approach, and in turn identify cover plant species with a high weed control potential via competition for soil resources in banana cropping systems. A field experiment was conducted on 17 cover plant species, two weed species and two banana cultivars grown individually. Four functional traits were measured. Two of them (i.e., the size of the zone explored by roots and the root impact density) were used to characterize root system soil exploration patterns. Two other traits (i.e., specific root length and root diameter) were used to characterize resource acquisition within the soil zone explored by the roots. All studied traits exhibited marked variations among species. The findings suggested a trade-off between the abilities of species to develop a limited number of large diameter roots exploring a large soil zone versus many thin roots exploring a smaller soil zone. Three soil-resource exploitation strategies were identified among species: (i) with large diameter roots that explore a large soil zone; (ii) with small diameter roots and a high specific length that explore a smaller soil zone; and (iii) with a high total root-impact density and an intermediate specific root length that explore the uppermost soil layers. Interestingly, in our panel of species, no correlations with regard to belowground and aboveground strategies were noted: species with an acquisitive belowground strategy could display an acquisitive or a conservative aboveground strategy. The findings of this study illustrated that a trait-based approach could be used to identify plant species with potential for competing with weeds, while minimising competition with banana. Six of the 17 studied cover crop species were identified as having this potential. The next step will be to assess them for their weed control performances in banana cropping systems with low reliance on herbicides. PMID:28257454

Trait-based characterisation of soil exploitation strategies of banana, weeds and cover plant species.

PubMed

Tardy, Florence; Damour, Gaëlle; Dorel, Marc; Moreau, Delphine

2017-01-01

Cover plants can be introduced in cropping systems to provide agroecosystem services, including weed control via competition for resources. There is currently no consensus on how to identify the best cover plant species, while trait-based approaches are promising for screening plant species due to their agroecosystem service provision potential. This study was carried out to characterize soil exploitation strategies of cover plant species in banana agroecosystems using a trait-based approach, and in turn identify cover plant species with a high weed control potential via competition for soil resources in banana cropping systems. A field experiment was conducted on 17 cover plant species, two weed species and two banana cultivars grown individually. Four functional traits were measured. Two of them (i.e., the size of the zone explored by roots and the root impact density) were used to characterize root system soil exploration patterns. Two other traits (i.e., specific root length and root diameter) were used to characterize resource acquisition within the soil zone explored by the roots. All studied traits exhibited marked variations among species. The findings suggested a trade-off between the abilities of species to develop a limited number of large diameter roots exploring a large soil zone versus many thin roots exploring a smaller soil zone. Three soil-resource exploitation strategies were identified among species: (i) with large diameter roots that explore a large soil zone; (ii) with small diameter roots and a high specific length that explore a smaller soil zone; and (iii) with a high total root-impact density and an intermediate specific root length that explore the uppermost soil layers. Interestingly, in our panel of species, no correlations with regard to belowground and aboveground strategies were noted: species with an acquisitive belowground strategy could display an acquisitive or a conservative aboveground strategy. The findings of this study illustrated that a trait-based approach could be used to identify plant species with potential for competing with weeds, while minimising competition with banana. Six of the 17 studied cover crop species were identified as having this potential. The next step will be to assess them for their weed control performances in banana cropping systems with low reliance on herbicides.

Kinematics of shallow backthrusts in the Seattle fault zone, Washington State

USGS Publications Warehouse

Pratt, Thomas L.; Troost, K.G.; Odum, Jackson K.; Stephenson, William J.

2015-01-01

Near-surface thrust fault splays and antithetic backthrusts at the tips of major thrust fault systems can distribute slip across multiple shallow fault strands, complicating earthquake hazard analyses based on studies of surface faulting. The shallow expression of the fault strands forming the Seattle fault zone of Washington State shows the structural relationships and interactions between such fault strands. Paleoseismic studies document an ∼7000 yr history of earthquakes on multiple faults within the Seattle fault zone, with some backthrusts inferred to rupture in small (M ∼5.5–6.0) earthquakes at times other than during earthquakes on the main thrust faults. We interpret seismic-reflection profiles to show three main thrust faults, one of which is a blind thrust fault directly beneath downtown Seattle, and four small backthrusts within the Seattle fault zone. We then model fault slip, constrained by shallow deformation, to show that the Seattle fault forms a fault propagation fold rather than the alternatively proposed roof thrust system. Fault slip modeling shows that back-thrust ruptures driven by moderate (M ∼6.5–6.7) earthquakes on the main thrust faults are consistent with the paleoseismic data. The results indicate that paleoseismic data from the back-thrust ruptures reveal the times of moderate earthquakes on the main fault system, rather than indicating smaller (M ∼5.5–6.0) earthquakes involving only the backthrusts. Estimates of cumulative shortening during known Seattle fault zone earthquakes support the inference that the Seattle fault has been the major seismic hazard in the northern Cascadia forearc in the late Holocene.

Gravity-induced changes in intracellular potentials in elongating cortical cells of mung bean roots

NASA Technical Reports Server (NTRS)

Ishikawa, H.; Evans, M. L.

1990-01-01

Gravity-induced changes in intracellular potentials in primary roots of 2-day-old mung bean (Vigna mungo L. cv. black matpe) seedlings were investigated using glass microelectrodes held by 3-dimensional hydraulic micro-drives. The electrodes were inserted into outer cortical cells within the elongation zone. Intracellular potentials, angle of root orientation with respect to gravity, and position within the root of the impaled cortical cell were measured simultaneously. Gravistimulation caused intracellular potential changes in cortical cells of the elongation zone. When the roots were oriented vertically, the intracellular potentials of the outer cortical cells (2 mm behind the root apex) were approximately - 115 mV. When the roots were placed horizontally cortical cells on the upper side hyperpolarized to - 154 mV within 30 s while cortical cells on the lower side depolarized to about - 62 mV. This electrical asymmetry did not occur in cells of the maturation zone. Because attempts to insert the electrode into cells of the root cap were unsuccessful, these cells were not measured. The hyperpolarization of cortical cells on the upper side was greatly reduced upon application of N,N'-dicyclohexylcarbodiimide (DCCD), an inhibitor of respiratory energy coupling. When stimulated roots were returned to the vertical, the degree of hyperpolarization of cortical cells on the previous upper side decreased within 30 s and approached that of cortical cells in non-stimulated roots. This cycle of hyperpolarization/loss of hyperpolarization was repeatable at least ten times by alternately turning the root from the vertical to the horizontal and back again. The very short (<30 s) lag period of these electrical changes indicates that they may result from stimulus-perception and transduction within the elongation zone rather than from transmission of a signal from the root cap.

The initiation of lateral roots in the primary roots of maize (Zea mays L.) implies a reactivation of cell proliferation in a group of founder pericycle cells.

PubMed

Alarcón, M Victoria; Lloret, Pedro G; Martín-Partido, Gervasio; Salguero, Julio

2016-03-15

The initiation of lateral roots (LRs) has generally been viewed as a reactivation of proliferative activity in pericycle cells that are committed to initiate primordia. However, it is also possible that pericycle founder cells that initiate LRs never cease proliferative activity but rather are displaced to the most distal root zones while undertaking successive stages of LR initiation. In this study, we tested these two alternative hypotheses by examining the incorporation of 5-bromo-2'-deoxyuridine (BrdU) into the DNA of meristematic root cells of Zea mays. According to the values for the length of the cell cycle and values for cell displacement along the maize root, our results strongly suggest that pericycle cells that initiate LR primordia ceased proliferative activity upon exiting the meristematic zone. This finding is supported by the existence of a root zone between 4 and 20mm from the root cap junction, in which neither mitotic cells nor labelled nuclei were observed in phloem pericycle cells. Copyright © 2016 Elsevier GmbH. All rights reserved.

Frictional behavior of carbonate-rich incoming sediment in the Hikurangi subduction zone

NASA Astrophysics Data System (ADS)

Rabinowitz, H. S.; Savage, H. M.; Carpenter, B.; Ikari, M.; Collettini, C.

2017-12-01

In recent years, the traditional view of the seismogenic zone has been challenged by observations of a range of seismic behaviors both above and below the depths previously considered capable of nucleating earthquakes. The Hikurangi trench is one of the few subduction zones where this transitional seismic behavior has been observed at the shallowest portions of the subduction zone, providing an opportunity to investigate the mechanical controls on seismic behavior through measurements of directly sampled sediment. To this end, an IODP cruise (March-May, 2018; Exp. 375) will recover sample from the faults that participate in this shallow seismic behavior. In order to obtain preliminary frictional characterization of the sedimentary inputs to the Hikurangi Trench, we conducted deformation experiments on samples from an ocean drill core through the incoming sediments (ODP Site 1124). The sedimentary package subducting at Hikurangi contains carbonate-rich lithologies, which have been shown to be more frictionally unstable (velocity-weakening, high healing rates) than the clays that comprise the majority of the sedimentary inputs to global subduction zones. Such frictional properties could promote seismic behavior in the shallower reaches of the subduction zone. We focus on a section of ODP Site 1124 which has a carbonate content of 40 wt% to investigate the effect of this lithology. Samples were saturated with distilled water mixed with 35 g/l sea salt. Velocity-stepping and slide-hold-slide tests were performed in multiple biaxial and triaxial deformation apparatus to investigate a range of pressures, temperatures and velocities relevant to the shallow subduction zone (σeff = 1-150 MPa, sliding velocities of 1.7 nm/s-300 μm/s, hold times of 1-1000 s, and T = 20-100 ºC). We observe transitions from velocity-strengthening to velocity-weakening behavior over these conditions which could contribute to shallow seismic behavior in the Hikurangi trench.

Elemental composition of native wetland plants in constructed mesocosm treatment wetlands.

PubMed

Collins, Beverly S; Sharitz, Rebecca R; Coughlin, Daniel P

2005-05-01

Plants that accumulate a small percentage of metals in constructed treatment wetlands can contribute to remediation of acidic, metal contaminated runoff waters from coal mines or processing areas. We examined root and shoot concentrations of elements in four perennial wetland species over two seasons in mesocosm wetland systems designed to remediate water from a coal pile runoff basin. Deep wetlands in each system contained Myriophyllum aquaticum and Nymphaea odorata; shallow wetlands contained Juncus effusus and Pontederia cordata. Shoot elemental concentrations differed between plants of deep and shallow wetlands, with higher Zn, Al, and Fe concentrations in plants in shallow wetlands and higher Na, Mn, and P concentrations in plants in deep wetlands. Root and shoot concentrations of most elements differed between species in each wetland type. Over two seasons, these four common wetland plants did help remediate acidic, metal-contaminated runoff from a coal storage pile.

Descendant root volume varies as a function of root type: estimation of root biomass lost during uprooting in Pinus pinaster.

PubMed

Danjon, Frédéric; Caplan, Joshua S; Fortin, Mathieu; Meredieu, Céline

2013-01-01

Root systems of woody plants generally display a strong relationship between the cross-sectional area or cross-sectional diameter (CSD) of a root and the dry weight of biomass (DWd) or root volume (Vd) that has grown (i.e., is descendent) from a point. Specification of this relationship allows one to quantify root architectural patterns and estimate the amount of material lost when root systems are extracted from the soil. However, specifications of this relationship generally do not account for the fact that root systems are comprised of multiple types of roots. We assessed whether the relationship between CSD and Vd varies as a function of root type. Additionally, we sought to identify a more accurate and time-efficient method for estimating missing root volume than is currently available. We used a database that described the 3D root architecture of Pinus pinaster root systems (5, 12, or 19 years) from a stand in southwest France. We determined the relationship between CSD and Vd for 10,000 root segments from intact root branches. Models were specified that did and did not account for root type. The relationships were then applied to the diameters of 11,000 broken root ends to estimate the volume of missing roots. CSD was nearly linearly related to the square root of Vd, but the slope of the curve varied greatly as a function of root type. Sinkers and deep roots tapered rapidly, as they were limited by available soil depth. Distal shallow roots tapered gradually, as they were less limited spatially. We estimated that younger trees lost an average of 17% of root volume when excavated, while older trees lost 4%. Missing volumes were smallest in the central parts of root systems and largest in distal shallow roots. The slopes of the curves for each root type are synthetic parameters that account for differentiation due to genetics, soil properties, or mechanical stimuli. Accounting for this differentiation is critical to estimating root loss accurately.

Descendant root volume varies as a function of root type: estimation of root biomass lost during uprooting in Pinus pinaster

PubMed Central

Danjon, Frédéric; Caplan, Joshua S.; Fortin, Mathieu; Meredieu, Céline

2013-01-01

Root systems of woody plants generally display a strong relationship between the cross-sectional area or cross-sectional diameter (CSD) of a root and the dry weight of biomass (DWd) or root volume (Vd) that has grown (i.e., is descendent) from a point. Specification of this relationship allows one to quantify root architectural patterns and estimate the amount of material lost when root systems are extracted from the soil. However, specifications of this relationship generally do not account for the fact that root systems are comprised of multiple types of roots. We assessed whether the relationship between CSD and Vd varies as a function of root type. Additionally, we sought to identify a more accurate and time-efficient method for estimating missing root volume than is currently available. We used a database that described the 3D root architecture of Pinus pinaster root systems (5, 12, or 19 years) from a stand in southwest France. We determined the relationship between CSD and Vd for 10,000 root segments from intact root branches. Models were specified that did and did not account for root type. The relationships were then applied to the diameters of 11,000 broken root ends to estimate the volume of missing roots. CSD was nearly linearly related to the square root of Vd, but the slope of the curve varied greatly as a function of root type. Sinkers and deep roots tapered rapidly, as they were limited by available soil depth. Distal shallow roots tapered gradually, as they were less limited spatially. We estimated that younger trees lost an average of 17% of root volume when excavated, while older trees lost 4%. Missing volumes were smallest in the central parts of root systems and largest in distal shallow roots. The slopes of the curves for each root type are synthetic parameters that account for differentiation due to genetics, soil properties, or mechanical stimuli. Accounting for this differentiation is critical to estimating root loss accurately. PMID:24167506

Magma reservoirs and neutral buoyancy zones on Venus - Implications for the formation and evolution of volcanic landforms

NASA Technical Reports Server (NTRS)

Head, James W.; Wilson, Lionel

1992-01-01

The production of magma reservoirs and neutral buoyancy zones (NBZs) on Venus and the implications of their development for the formation and evolution of volcanic landforms are examined. The high atmospheric pressure on Venus reduces volatile exsolution and generally serves to inhibit the formation of NBZs and shallow magma reservoirs. For a range of common terrestrial magma-volatile contents, magma ascending and erupting near or below mean planetary radius (MPR) should not stall at shallow magma reservoirs; such eruptions are characterized by relatively high total volumes and effusion rates. For the same range of volatile contents at 2 km above MPR, about half of the cases result in the direct ascent of magma to the surface and half in the production of neutral buoyancy zones. NBZs and shallow magma reservoirs begin to appear as gas content increases and are nominally shallower on Venus than on earth. For a fixed volatile content, NBZs become deeper with increasing elevation: over the range of elevations treated in this study (-1 km to +4.4 km) depths differ by a factor of 2-4. Factors that may account for the low height of volcanoes on Venus are discussed.

Effect of water table dynamics on land surface hydrologic memory

NASA Astrophysics Data System (ADS)

Lo, Min-Hui; Famiglietti, James S.

2010-11-01

The representation of groundwater dynamics in land surface models has received considerable attention in recent years. Most studies have found that soil moisture increases after adding a groundwater component because of the additional supply of water to the root zone. However, the effect of groundwater on land surface hydrologic memory (persistence) has not been explored thoroughly. In this study we investigate the effect of water table dynamics on National Center for Atmospheric Research Community Land Model hydrologic simulations in terms of land surface hydrologic memory. Unlike soil water or evapotranspiration, results show that land surface hydrologic memory does not always increase after adding a groundwater component. In regions where the water table level is intermediate, land surface hydrologic memory can even decrease, which occurs when soil moisture and capillary rise from groundwater are not in phase with each other. Further, we explore the hypothesis that in addition to atmospheric forcing, groundwater variations may also play an important role in affecting land surface hydrologic memory. Analyses show that feedbacks of groundwater on land surface hydrologic memory can be positive, negative, or neutral, depending on water table dynamics. In regions where the water table is shallow, the damping process of soil moisture variations by groundwater is not significant, and soil moisture variations are mostly controlled by random noise from atmospheric forcing. In contrast, in regions where the water table is very deep, capillary fluxes from groundwater are small, having limited potential to affect soil moisture variations. Therefore, a positive feedback of groundwater to land surface hydrologic memory is observed in a transition zone between deep and shallow water tables, where capillary fluxes act as a buffer by reducing high-frequency soil moisture variations resulting in longer land surface hydrologic memory.

Geodesy cannot presently detect the up-dip limit of frictional locking on megathrusts

NASA Astrophysics Data System (ADS)

Almeida, R. V.; Lindsey, E. O.; Bradley, K.; Hubbard, J.; Sathiakumar, S.; Malick, R.; Hill, E.

2017-12-01

Most discussions of interseismic behavior on megathrust faults focus on whether they are frictionally locked or creeping. Unfortunately, many geodetic studies of subduction zone megathrusts equate fault coupling with frictional locking. This comparison is not appropriate, as one reflects the physical properties of the fault, and the other reflects the kinematics of the fault. Much of the uncertainty about slip behavior is because in subduction zones, the shallow part of the fault is far from land, and therefore creep is not detectable by land-based GPS. Published coupling maps of subduction zone megathrusts often assume a low coupling ratio near the trench, updip from fully coupled regions. Yet, if the megathrust attains a coupling ratio of 1 anywhere on the fault (i.e., the hanging wall is moving with the same velocity as the footwall), a lower value of coupling updip of this location requires interseismic extension at a rate proportional to the decrease (Wang and Dixon, 2004). We argue that the shallow region of megathrusts lie in updip stress shadows, and do not (except under rare circumstances) experience appropriate driving forces to cause significant creep during the interseismic period. Therefore it may not be possible to determine whether these regions are frictionally locked by examining interseismic geodetic records. We demonstrate this effect using a boundary element model with rate-strengthening friction and a simplified subduction zone geometry. We show that a coupling value of zero at the trench is physically unrealistic even if only a small portion of the downdip fault zone is locked. The maximum creep at the trench depends on the width of the transition of the frictionally locked zone, but should be small (<30% of plate rate) under most circumstances. During the interseismic period, even if the shallow parts of megathrusts are frictionally unlocked, creep is likely smaller than the resolution of current seafloor geodetic techniques (which is currently in the range of cms/yr). These results have important implications for various aspects of subduction studies, including physical limits on geodetic coupling inversions, the hazard posed by slip on shallow decollements (tsunamigenic or otherwise), the seismotectonic interpretation of shallow seismicity, and the utility of seafloor geodetic measurements.

Recipe for Hypoxia: Playing the Dead Zone Game

ERIC Educational Resources Information Center

Kastler, Jessica A.

2009-01-01

Dead zones--areas experiencing low levels of dissolved oxygen--are growing in shallow ocean waters around the world. Research has shown that dead zones form as a result of a specific type of pollution, called nutrient enrichment or eutrophication, and are found in almost every coastal zone where humans have large populations. Concepts related to…

Root growth dynamics linked to above-ground growth in walnut (Juglans regia).

PubMed

Contador, Maria Loreto; Comas, Louise H; Metcalf, Samuel G; Stewart, William L; Porris Gomez, Ignacio; Negron, Claudia; Lampinen, Bruce D

2015-07-01

Examination of plant growth below ground is relatively scant compared with that above ground, and is needed to understand whole-plant responses to the environment. This study examines whether the seasonal timing of fine root growth and the spatial distribution of this growth through the soil profile varies in response to canopy manipulation and soil temperature. Plasticity in the seasonal timing and vertical distribution of root production in response to canopy and soil water manipulation was analysed in field-grown walnut (Juglans regia 'Chandler') using minirhizotron techniques. Root production in walnuts followed a unimodal curve, with one marked flush of root growth starting in mid-May, with a peak in mid-June. Root production declined later in the season, corresponding to increased soil temperature, as well as to the period of major carbohydrate allocation to reproduction. Canopy and soil moisture manipulation did not influence the timing of root production, but did influence the vertical distribution of roots through the soil profile. Water deficit appeared to promote root production in deeper soil layers for mining soil water. Canopy removal appeared to promote shallow root production. The findings of this study add to growing evidence that root growth in many ecosystems follows a unimodal curve with one marked flush of root growth in coordination with the initial leaf flush of the season. Root vertical distribution appeared to have greater plasticity than timing of root production in this system, with temperature and/or carbohydrate competition constraining the timing of root growth. Effects on root distribution can have serious impacts on trees, with shallow rooting having negative impacts in years with limited soil water or positive impacts in years with wet springs, and deep rooting having positive impacts on soil water mining from deeper soil layers but negative impacts in years with wet springs. © The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

76 FR 67379 - Importation of Dracaena Plants From Costa Rica

Federal Register 2010, 2011, 2012, 2013, 2014

2011-11-01

... rooting zone for plants produced by air layering) to the farthest terminal growing point. Paragraph (y)(2... the soil line (or top of the rooting zone for plants produced by air layering) to the farthest...

Geological perspectives of shallow slow earthquakes deduced from deformation in subduction mélanges

NASA Astrophysics Data System (ADS)

Ujiie, K.; Saishu, H.; Kinoshita, T.; Nishiyama, N.; Otsubo, M.; Ohta, K.; Yamashita, Y.; Ito, Y.

2017-12-01

Shallow (< 15 km depth) slow earthquakes are important to understand, as they occur along the subduction thrust where devastating tsunamis are generated. Geophysical studies have revealed that shallow slow earthquakes are not restricted to specific temperature conditions and depths but occur in regions of high fluid pressure. In the Nankai subduction zone, the shallow slow slip appears to trigger tremor and very-low-frequency-earthquake. However, the geologic perspectives for shallow slow earthquakes remain enigmatic. The Makimine mélange in the Late Cretaceous Shimanto accretionary complex of southwest Japan was formed during the subduction of young oceanic plate. Within the mélange, the quartz-filled veins and viscous shear zones are concentrated in the zones of 10 to 60 m-thick. The veins consist of shear veins showing low-angle thrust or normal faulting mechanisms and extension veins parallel or at high angle to mélange foliation. The geometrical relationship between shear and extension veins indicates that shear slip and tensile fracturing occur by small differential stress under elevated fluid pressure. The shear and extension veins typically show crack-seal textures defined by the solid inclusions bands. The time scale of each crack-seal event, which is determined from the quartz kinetics considering inclusion band spacing and vein length, is a few years. The shear slip increments estimated from the spacing of inclusions bands at dilational jogs are 0.1 mm. The viscous shear is accommodated by pressure solution creep and consistently shows low-angle thrust shear sense. These geologic features are suggested to explain seismogenic environment for shallow slow earthquakes. The shear veins and viscous shear zones showing low-angle thrust faulting mechanism could represent episodic tremor and slip, while the shear veins showing low-angle normal faulting mechanism may represent the tremor that occurred after the passage of slow slip front.

Comparison of different assimilation methodologies of groundwater levels to improve predictions of root zone soil moisture with an integrated terrestrial system model

NASA Astrophysics Data System (ADS)

Zhang, Hongjuan; Kurtz, Wolfgang; Kollet, Stefan; Vereecken, Harry; Franssen, Harrie-Jan Hendricks

2018-01-01

The linkage between root zone soil moisture and groundwater is either neglected or simplified in most land surface models. The fully-coupled subsurface-land surface model TerrSysMP including variably saturated groundwater dynamics is used in this work. We test and compare five data assimilation methodologies for assimilating groundwater level data via the ensemble Kalman filter (EnKF) to improve root zone soil moisture estimation with TerrSysMP. Groundwater level data are assimilated in the form of pressure head or soil moisture (set equal to porosity in the saturated zone) to update state vectors. In the five assimilation methodologies, the state vector contains either (i) pressure head, or (ii) log-transformed pressure head, or (iii) soil moisture, or (iv) pressure head for the saturated zone only, or (v) a combination of pressure head and soil moisture, pressure head for the saturated zone and soil moisture for the unsaturated zone. These methodologies are evaluated in synthetic experiments which are performed for different climate conditions, soil types and plant functional types to simulate various root zone soil moisture distributions and groundwater levels. The results demonstrate that EnKF cannot properly handle strongly skewed pressure distributions which are caused by extreme negative pressure heads in the unsaturated zone during dry periods. This problem can only be alleviated by methodology (iii), (iv) and (v). The last approach gives the best results and avoids unphysical updates related to strongly skewed pressure heads in the unsaturated zone. If groundwater level data are assimilated by methodology (iii), EnKF fails to update the state vector containing the soil moisture values if for (almost) all the realizations the observation does not bring significant new information. Synthetic experiments for the joint assimilation of groundwater levels and surface soil moisture support methodology (v) and show great potential for improving the representation of root zone soil moisture.

Quantitative analysis of seismic fault zone waves in the rupture zone of the 1992 Landers, California, earthquake: Evidence for a shallow trapping structure

USGS Publications Warehouse

Peng, Z.; Ben-Zion, Y.; Michael, A.J.; Zhu, L.

2003-01-01

We analyse quantitatively a waveform data set of 238 earthquakes recorded by a dense seismic array across and along the rupture zone of the 1992 Landers earthquake. A grid-search method with station delay corrections is used to locate events that do not have catalogue locations. The quality of fault zone trapped waves generated by each event is determined from the ratios of seismic energy in time windows corresponding to trapped waves and direct S waves at stations close to and off the fault zone. Approximately 70 per cent of the events with S-P times of less than 2 s, including many clearly off the fault, produce considerable trapped wave energy. This distribution is in marked contrast with previous claims that trapped waves are generated only by sources close to or inside the Landers rupture zone. The time difference between the S arrival and trapped waves group does not grow systematically with increasing hypocentral distance and depth. The dispersion measured from the trapped waves is weak. These results imply that the seismic trapping structure at the Landers rupture zone is shallow and does not extend continuously along-strike by more than a few kilometres. Synthetic waveform modelling indicates that the fault zone waveguide has depth of approximately 2-4 km, a width of approximately 200 m, an S-wave velocity reduction relative to the host rock of approximately 30-40 per cent and an S-wave attenuation coefficient of approximately 20-30. The fault zone waveguide north of the array appears to be shallower and weaker than that south of the array. The waveform modelling also indicates that the seismic trapping structure below the array is centred approximately 100 m east of the surface break.

Effects of stratification, organic matter remineralization and bathymetry on summertime oxygen distribution in the Bohai Sea, China

NASA Astrophysics Data System (ADS)

Zhao, Hua-De; Kao, Shuh-Ji; Zhai, Wei-Dong; Zang, Kun-Peng; Zheng, Nan; Xu, Xue-Mei; Huo, Cheng; Wang, Ju-Ying

2017-02-01

The Bohai Sea, a semi-enclosed shallow coastal sea with increasing nutrient loads, is susceptible to seasonal oxygen deficiency in its bottom waters, similar to many other areas of the worlds' coastal oceans. We examined the dissolved oxygen (DO) distribution in the Bohai during August 2014. Two oxygen-deficient zones (DO<92 μmol O2 kg-1) with a minimum DO of 80 μmol O2 kg-1 were documented. The area and volume of bottom oxygen-deficient water were 756 km2 and 7820×106 m3, with a mean thickness of 10 m. Thus, the Bohai is second to the Changjiang estuary in its oxygen-deficient zone size among China's coastal waters. We classified three hydrographic areas that dictated the distribution of DO: 1) the shallow well-mixed zone; 2) the laterally-open stratified zone; and 3) the isolated stratified zone. Vertical mixing dominated the shallow well-mixed zone leading to homogeneous DO in the water column. The laterally-open stratified zone was influenced by high DO and low temperature inflow through the northern Bohai Strait. The isolated stratified zones, i.e., the low DO areas, were found in depressed regions. The stoichiometric relationship between DO consumption and the corresponding enrichment of dissolved inorganic carbon suggested that the aerobic respiration of organic matter contributed to the oxygen-depletion in the isolated stratified zone. Overall, the bottom DO distribution in the Bohai system was controlled largely by lateral DO exchange modified by bathymetric features, while superimposed on that was the build-up of stratification caused by summer heating and the remineralization of organics sourced from spring phytoplankton bloom.

Climate impact on the tree growth, vigor and productivity in Siberia

NASA Astrophysics Data System (ADS)

Kharuk, V.; Im, S.; Petrov, I.; Dvinskaya, M.

2017-12-01

Changing climate has an impact on the Siberian taiga forests. We analyzed GPP and NPP trends, growth index, and stands mortality within the Central Siberia (48°- 75°N/80°-115°E). Considered forests included larch-dominant (Larix sibirica, L. dahurica) and "dark needle conifer" (DNC: Abies sibirica, Pinus sibirica, Picea obovata) stands. GPP and NPP trends calculated based on the Terra/MODIS products. Growth index calculations based on dendrochronology data. Water stress analysis based on the gravimetric and microwave satellite data and MERRA-2 database. Analyzed variables included precipitation, air temperature, VPD, drought index SPEI, and root zone wetness. We found positive GPP trends within majority (>90%) of larch-dominant and DNC ranges, whereas NPP trends are positive on the <40% territory. Negative NPP trends correlated with growth index within key-sites. Siberian pine and fir growth index increase since late 1970th, turning to depression since late 1980th. Within permafrost zone larch growth correlated with sum of positive (t>+10C°) temperatures and vegetation period length. During recent years larch experience water stress in the beginning of vegetation period. Tree decline and mortality observed within DNC stands, and that phenomenon regularly coincided with zones of negative NPP trends. Mortality correlated with VPD, SPEI, and root zone moisture content. Bark beetles (including aggressive species Polygraphus proximus, similar to Dendroctonus ponderosae in American forests) attacked water-stressed trees. Geographically, mortality began on the margins of the DNC range (e.g., within the forest-steppe ecotone) and on terrain features with maximal water stress risk (narrow-shaped hilltops, convex steep south facing slopes, shallow well-drained soils). Currently, Siberian pine and fir decline observed within southern range of these species. In addition, air temperature and aridity increase promotes Siberian silkmoth (Dendrolimus sibiricus) outbreak that occurred about one degree northward of formerly range. Observing and predicting aridity increase will lead to the replacement of Siberian pine and fir within southern range of these species with more tolerant species (e.g., Pinus sylvestris, Larix spp.).

Dro1, a major QTL involved in deep rooting of rice under upland field conditions.

PubMed

Uga, Yusaku; Okuno, Kazutoshi; Yano, Masahiro

2011-05-01

Developing a deep root system is an important strategy for avoiding drought stress in rice. Using the 'basket' method, the ratio of deep rooting (RDR; the proportion of total roots that elongated through the basket bottom) was calculated to evaluate deep rooting. A new major quantitative trait locus (QTL) controlling RDR was detected on chromosome 9 by using 117 recombinant inbred lines (RILs) derived from a cross between the lowland cultivar IR64, with shallow rooting, and the upland cultivar Kinandang Patong (KP), with deep rooting. This QTL explained 66.6% of the total phenotypic variance in RDR in the RILs. A BC(2)F(3) line homozygous for the KP allele of the QTL had an RDR of 40.4%, compared with 2.6% for the homozygous IR64 allele. Fine mapping of this QTL was undertaken using eight BC(2)F(3) recombinant lines. The RDR QTL Dro1 (Deeper rooting 1) was mapped between the markers RM24393 and RM7424, which delimit a 608.4 kb interval in the reference cultivar Nipponbare. To clarify the influence of Dro1 in an upland field, the root distribution in different soil layers was quantified by means of core sampling. A line homozygous for the KP allele of Dro1 (Dro1-KP) and IR64 did not differ in root dry weight in the shallow soil layers (0-25 cm), but root dry weight of Dro1-KP in deep soil layers (25-50 cm) was significantly greater than that of IR64, suggesting that Dro1 plays a crucial role in increased deep rooting under upland field conditions.

Comparing simple root phenotyping methods on a core set of rice genotypes.

PubMed

Shrestha, R; Al-Shugeairy, Z; Al-Ogaidi, F; Munasinghe, M; Radermacher, M; Vandenhirtz, J; Price, A H

2014-05-01

Interest in belowground plant growth is increasing, especially in relation to arguments that shallow-rooted cultivars are efficient at exploiting soil phosphorus while deep-rooted ones will access water at depth. However, methods for assessing roots in large numbers of plants are diverse and direct comparisons of methods are rare. Three methods for measuring root growth traits were evaluated for utility in discriminating rice cultivars: soil-filled rhizotrons, hydroponics and soil-filled pots whose bottom was sealed with a non-woven fabric (a potential method for assessing root penetration ability). A set of 38 rice genotypes including the OryzaSNP set of 20 cultivars, additional parents of mapping populations and products of marker-assisted selection for root QTLs were assessed. A novel method of image analysis for assessing rooting angles from rhizotron photographs was employed. The non-woven fabric was the easiest yet least discriminatory method, while the rhizotron was highly discriminatory and allowed the most traits to be measured but required more than three times the labour of the other methods. The hydroponics was both easy and discriminatory, allowed temporal measurements, but is most likely to suffer from artefacts. Image analysis of rhizotrons compared favourably to manual methods for discriminating between cultivars. Previous observations that cultivars from the indica subpopulation have shallower rooting angles than aus or japonica cultivars were confirmed in the rhizotrons, and indica and temperate japonicas had lower maximum root lengths in rhizotrons and hydroponics. It is concluded that rhizotrons are the preferred method for root screening, particularly since root angles can be assessed. © 2013 German Botanical Society and The Royal Botanical Society of the Netherlands.

Progressive Inhibition by Water Deficit of Cell Wall Extensibility and Growth along the Elongation Zone of Maize Roots Is Related to Increased Lignin Metabolism and Progressive Stelar Accumulation of Wall Phenolics1

PubMed Central

Fan, Ling; Linker, Raphael; Gepstein, Shimon; Tanimoto, Eiichi; Yamamoto, Ryoichi; Neumann, Peter M.

2006-01-01

Water deficit caused by addition of polyethylene glycol 6000 at −0.5 MPa water potential to well-aerated nutrient solution for 48 h inhibited the elongation of maize (Zea mays) seedling primary roots. Segmental growth rates in the root elongation zone were maintained 0 to 3 mm behind the tip, but in comparison with well-watered control roots, progressive growth inhibition was initiated by water deficit as expanding cells crossed the region 3 to 9 mm behind the tip. The mechanical extensibility of the cell walls was also progressively inhibited. We investigated the possible involvement in root growth inhibition by water deficit of alterations in metabolism and accumulation of wall-linked phenolic substances. Water deficit increased expression in the root elongation zone of transcripts of two genes involved in lignin biosynthesis, cinnamoyl-CoA reductase 1 and 2, after only 1 h, i.e. before decreases in wall extensibility. Further increases in transcript expression and increased lignin staining were detected after 48 h. Progressive stress-induced increases in wall-linked phenolics at 3 to 6 and 6 to 9 mm behind the root tip were detected by comparing Fourier transform infrared spectra and UV-fluorescence images of isolated cell walls from water deficit and control roots. Increased UV fluorescence and lignin staining colocated to vascular tissues in the stele. Longitudinal bisection of the elongation zone resulted in inward curvature, suggesting that inner, stelar tissues were also rate limiting for root growth. We suggest that spatially localized changes in wall-phenolic metabolism are involved in the progressive inhibition of wall extensibility and root growth and may facilitate root acclimation to drying environments. PMID:16384904

Field experiment with liquid manure and enhanced biochar

NASA Astrophysics Data System (ADS)

Dunst, Gerald

2017-04-01

Field experiments with low amounts of various liquid manure enhanced biochars. In 2016 a new machine was developed to inject liquid biochar based fertilizer directly into the crop root zone. A large-scale field experiment with corn and oil seed pumpkin was set-up on 42 hectares on 15 different fields in the south East of Austria. Three treatments were compared: (1) surface spreading of liquid manure as control (common practice), (2) 20 cm deep root zone injection with same amount of liquid manure, and (3) 20 cm deep root zone injection with same amount of liquid manure mixed with 1 to 2 tons of various nutrient enhanced biochars. The biochar were quenched with the liquid phase from a separated digestate from a biogas plant (feedstock: cow manure). From May to October nitrate and ammonium content was analyzed monthly from 0-30cm and 30-60cm soil horizons. At the end of the growing season the yield was determined. The root zone injection of the liquid manure reduced the nitrate content during the first two months at 13-16% compared to the control. When the liquid manure was blended with biochar, Nitrate soil content was lowest (reduction 40-47%). On average the root zone injection of manure-biochar increased the yield by 7% compared to the surface applied control and 3% compared to the root zone injected manure without biochar. The results shows, that biochar is able to reduce the Nitrate load in soils and increase the yield of corn at the same time. The nutrient efficiency of organic liquid fertilizers can be increased.

Are mesophotic coral ecosystems distinct communities and can they serve as refugia for shallow reefs?

NASA Astrophysics Data System (ADS)

Semmler, Robert F.; Hoot, Whitney C.; Reaka, Marjorie L.

2017-06-01

We analyzed an extensive dataset of over 9000 benthic and suprabenthic species found throughout the Gulf of Mexico (GoMx) to assess whether mesophotic coral ecosystems represent distinct assemblages and evaluate their potential to serve as refugia for shallow reef communities. We assessed community structure of the overall benthic community from 0 to 300 m via non-metric multidimensional scaling (NMDS) of species presence across depth bands. We used the Jaccard index of similarity to calculate the proportion of shared species between adjacent depth bands, measure species turnover with depth, and assess taxonomic overlap between shallow reefs versus progressively deeper depth bands. NMDS ordinations showed that the traditionally defined mesophotic range (30-150 m) as a whole is not a distinct community. In contrast, taxonomically distinct communities, determined by hierarchical clustering, were found at 0-70, 60-120, 110-200, and 190-300 m. Clustering highlighted an important separation in the benthic community at 60 m, which was especially important for actinopterygian fishes. Species turnover between adjacent depths decreased with depth for all taxa combined and individual taxa, with peaks at 60, 90-120, and 190-200 m. Fishes showed lower turnover from shallow to upper mesophotic depths (0-50 m) than all taxa combined, a substantial peak at 60 m, followed by a precipitous and continued decline in turnover thereafter. Taxonomic overlap between shallow (0-20 m) and progressively deeper zones declined steadily with depth in all taxa and individual taxa, suggesting that mid- and lower mesophotic habitats have less (but not inconsequential) potential to serve as refugia (60-150 m, 15-25% overlap with shallow habitats) than upper mesophotic zones (30-60 m, 30-45% overlap with shallow habitats) for all taxa combined. We conclude that the traditional mesophotic zone is home to three ecological communities in the GoMx, one that is confluent with shallow reefs, a distinct mesophotic assemblage spanning 60-120 m, and a third that extends onto the outer continental shelf.

Documentation of Computer Program INFIL3.0 - A Distributed-Parameter Watershed Model to Estimate Net Infiltration Below the Root Zone

USGS Publications Warehouse

,

2008-01-01

This report documents the computer program INFIL3.0, which is a grid-based, distributed-parameter, deterministic water-balance watershed model that calculates the temporal and spatial distribution of daily net infiltration of water across the lower boundary of the root zone. The bottom of the root zone is the estimated maximum depth below ground surface affected by evapotranspiration. In many field applications, net infiltration below the bottom of the root zone can be assumed to equal net recharge to an underlying water-table aquifer. The daily water balance simulated by INFIL3.0 includes precipitation as either rain or snow; snowfall accumulation, sublimation, and snowmelt; infiltration into the root zone; evapotranspiration from the root zone; drainage and water-content redistribution within the root-zone profile; surface-water runoff from, and run-on to, adjacent grid cells; and net infiltration across the bottom of the root zone. The water-balance model uses daily climate records of precipitation and air temperature and a spatially distributed representation of drainage-basin characteristics defined by topography, geology, soils, and vegetation to simulate daily net infiltration at all locations, including stream channels with intermittent streamflow in response to runoff from rain and snowmelt. The model does not simulate streamflow originating as ground-water discharge. Drainage-basin characteristics are represented in the model by a set of spatially distributed input variables uniquely assigned to each grid cell of a model grid. The report provides a description of the conceptual model of net infiltration on which the INFIL3.0 computer code is based and a detailed discussion of the methods by which INFIL3.0 simulates the net-infiltration process. The report also includes instructions for preparing input files necessary for an INFIL3.0 simulation, a description of the output files that are created as part of an INFIL3.0 simulation, and a sample problem that illustrates application of the code to a field setting. Brief descriptions of the main program routine and of each of the modules and subroutines of the INFIL3.0 code, as well as definitions of the variables used in each subroutine, are provided in an appendix.

Predicting forest dieback in Maine, USA: a simple model based on soil frost and drought

Treesearch

Allan N.D. Auclair; Warren E. Heilman; Blondel Brinkman

2010-01-01

Tree roots of northern hardwoods are shallow rooted, winter active, and minimally frost hardened; dieback is a winter freezing injury to roots incited by frost penetration in the absence of adequate snow cover and exacerbated by drought in summer. High soil water content greatly increases conductivity of frost. We develop a model based on the sum of z-scores of soil...

Woody plant roots fail to penetrate a clay-lined landfill: Managment implications

NASA Astrophysics Data System (ADS)

Robinson, George R.; Handel, Steven N.

1995-01-01

In many locations, regulatory agencies do not permit tree planting above landfills that are sealed with a capping clay, because roots might penetrate the clay barrier and expose landfill contents to leaching. We find, however, no empirical or theoretical basis for this restriction, and instead hypothesize that plant roots of any kind are incapable of penetrating the dense clays used to seal landfills. As a test, we excavated 30 trees and shrubs, of 12 species, growing over a clay-lined municipal sanitary landfill on Staten Island, New York. The landfill had been closed for seven years, and featured a very shallow (10 to 30-cm) soil layer over a 45-cm layer of compacted grey marl (Woodbury series) clay. The test plants had invaded naturally from nearby forests. All plants examined—including trees as tall as 6 m—had extremely shallow root plates, with deformed tap roots that grew entirely above and parallel to the clay layer. Only occasional stubby feeder roots were found in the top 1 cm of clay, and in clay cracks at depths to 6 cm, indicating that the primary impediment to root growth was physical, although both clay and the overlying soil were highly acidic. These results, if confirmed by experimental research should lead to increased options for the end use of many closed sanitary landfills.

Soil moisture dynamics modeling considering multi-layer root zone.

PubMed

Kumar, R; Shankar, V; Jat, M K

2013-01-01

The moisture uptake by plant from soil is a key process for plant growth and movement of water in the soil-plant system. A non-linear root water uptake (RWU) model was developed for a multi-layer crop root zone. The model comprised two parts: (1) model formulation and (2) moisture flow prediction. The developed model was tested for its efficiency in predicting moisture depletion in a non-uniform root zone. A field experiment on wheat (Triticum aestivum) was conducted in the sub-temperate sub-humid agro-climate of Solan, Himachal Pradesh, India. Model-predicted soil moisture parameters, i.e., moisture status at various depths, moisture depletion and soil moisture profile in the root zone, are in good agreement with experiment results. The results of simulation emphasize the utility of the RWU model across different agro-climatic regions. The model can be used for sound irrigation management especially in water-scarce humid, temperate, arid and semi-arid regions and can also be integrated with a water transport equation to predict the solute uptake by plant biomass.

A reinterpretation of the δDH2O of inclusion fluids in contemporaneous quartz and sphalerite, Creede mining district, Colorodo: a generic problem for shallow orebodies?

USGS Publications Warehouse

Foley, Nora K.; Bethke, Philip M.; Rye, Robert O.

1989-01-01

The unusually high contrast between the salinities of the ore-depositing fluids and the ground water overlying the ore zone allowed recognition of this phenomenon at Creede. It is likely, however, that Creede is not unique. Similar phenomena may be common in shallow ore zones where rapid fluctuation of an interface between a deep, high-temperature thermal plume and an overlying, cooler ground water may be expected to occur. Careful study of the origins of fluid inclusions, particularly in quartz, is essential to characterize the primary ore fluids and to assess the role of ground water in the hydrology of shallow ore deposits.

Observations of a two-layer soil moisture influence on surface energy dynamics and planetary boundary layer characteristics in a semiarid shrubland

NASA Astrophysics Data System (ADS)

Sanchez-Mejia, Zulia Mayari; Papuga, Shirley A.

2014-01-01

We present an observational analysis examining soil moisture control on surface energy dynamics and planetary boundary layer characteristics. Understanding soil moisture control on land-atmosphere interactions will become increasingly important as climate change continues to alter water availability. In this study, we analyzed 4 years of data from the Santa Rita Creosote Ameriflux site. We categorized our data independently in two ways: (1) wet or dry seasons and (2) one of the four cases within a two-layer soil moisture framework for the root zone based on the presence or absence of moisture in shallow (0-20 cm) and deep (20-60 cm) soil layers. Using these categorizations, we quantified the soil moisture control on surface energy dynamics and planetary boundary layer characteristics using both average responses and linear regression. Our results highlight the importance of deep soil moisture in land-atmosphere interactions. The presence of deep soil moisture decreased albedo by about 10%, and significant differences were observed in evaporative fraction even in the absence of shallow moisture. The planetary boundary layer height (PBLh) was largest when the whole soil profile was dry, decreasing by about 1 km when the whole profile was wet. Even when shallow moisture was absent but deep moisture was present the PBLh was significantly lower than when the entire profile was dry. The importance of deep moisture is likely site-specific and modulated through vegetation. Therefore, understanding these relationships also provides important insights into feedbacks between vegetation and the hydrologic cycle and their consequent influence on the climate system.

Maps Showing Seismic Landslide Hazards in Anchorage, Alaska

USGS Publications Warehouse

Jibson, Randall W.; Michael, John A.

2009-01-01

The devastating landslides that accompanied the great 1964 Alaska earthquake showed that seismically triggered landslides are one of the greatest geologic hazards in Anchorage. Maps quantifying seismic landslide hazards are therefore important for planning, zoning, and emergency-response preparation. The accompanying maps portray seismic landslide hazards for the following conditions: (1) deep, translational landslides, which occur only during great subduction-zone earthquakes that have return periods of =~300-900 yr; (2) shallow landslides for a peak ground acceleration (PGA) of 0.69 g, which has a return period of 2,475 yr, or a 2 percent probability of exceedance in 50 yr; and (3) shallow landslides for a PGA of 0.43 g, which has a return period of 475 yr, or a 10 percent probability of exceedance in 50 yr. Deep, translational landslide hazard zones were delineated based on previous studies of such landslides, with some modifications based on field observations of locations of deep landslides. Shallow-landslide hazards were delineated using a Newmark-type displacement analysis for the two probabilistic ground motions modeled.

Ecological evaluation of an experimental beneficial use scheme for dredged sediment disposal in shallow tidal waters.

PubMed

van der Wal, Daphne; Forster, Rodney M; Rossi, Francesca; Hummel, Herman; Ysebaert, Tom; Roose, Frederik; Herman, Peter M J

2011-01-01

An experiment was performed to test an alternative dredging strategy for the Westerschelde estuary. Clean sand dredged from the navigation channel was disposed seawards of an eroding intertidal flat in order to modify morphology and hydrodynamics, improving the multi-channel system with ecologically productive shallow water habitat. Five years of intensive monitoring revealed that part of the disposed sediment moved slowly towards the flat, increasing the very shallow subtidal and intertidal area, as planned. The sand in the impact zone became gradually finer after disposal, possibly due to reduced current velocities. Nevertheless, no changes in macrobenthic biomass, density, species richness and composition were detected in the subtidal zone, also demonstrating rapid macrobenthic recovery. In the intertidal zone, no ecological effects could be revealed superimposed on trends associated with long-term sediment fining. Thus, despite morphological success and absence of detected negative ecological impacts of the experiment, new beneficial habitat was not created. Copyright © 2010 Elsevier Ltd. All rights reserved.

Comparing Flow Mechanism Hypothesis with Mobility Data of Natural Tracers

NASA Astrophysics Data System (ADS)

Sanda, M.; Chárová, Z.; Zumr, D.; Císlerová, M.

2009-04-01

Hillslope rainfall-outflow interactions, groundwater fluxes and hydrological balance have been examined in the small mountainous headwater catchment Uhlířská (1.78 km2), Jizera Mountains, Czech Republic. The hillslope soil profile is formed by paleozolic crystalline bedrock overlaid by shallow highly permeable Cambisol, whereas the thick saturated glacial deposits in the valley are overlaid by Histosols. Quick communication of the vadose zone with the granite bedrock via preferential subsurface flowpaths is hypothesized, in agreement with the observation of instant water transformation through the permeable Cambisols, to outflow caused by storms. There is regularly a quick response of high magnitude, although surface runoff occurs very rarely. Standard climatic and hydrological monitoring is supplemented by measurements of the soil moisture, soil pore water suction, hillslope stormflow in the vadose zone and water table fluctuation in the saturated subsurface. Water sampling for analysis of the isotopes 18O and 2H and geochemical tracer silica in the form of SiO2 is performed throughout the catchment. The episode based isotopic data serve for the separation of the particular components of the outflow hydrograph and for the determination of the contribution of event and pre-event water in the hypodermic hillslope outflow and in the catchment outflow as a whole. Variation of silica content in the water cycle components was examined to assess contributions from the soil profile and the aquifer. Significant portion of event catchment runoff was assigned to pre-event water, partly stored in the shallow soil layers on hillslopes and partly in the valley aquifer. Here, a significant mixing (in form of attenuation of the input signal of 18O or 2H measured for precipitation) occurs as proven by sampling and modeling by means of physically based models for vadose and saturated zones. Hydrological balance of the catchment shows only minor discrepancies in averaged value of the either isotope in the whole balanced mass on the input (precipitation) and the output (streamflow). There is a strong mixing of water already in the root zone, where transpiration takes place. Preferential flow in the soil profile proved to be a major transporting mechanism for water in the form of quick subsurface runoff. The hypothesis that the hillslope soil layers controls the distribution of the flow into the groundwater recharge and/or the shallow subsurface flow during the rainfall-runoff episode, was confirmed. Porous structures of the catchment play dominant role in initial mixing of the water. We want to acknowledge projects GACR 205/09/0831 and 205/08/1174 of the Grant Agency of the Czech Republic for support of this contribution.

Steep, cheap and deep: an ideotype to optimize water and N acquisition by maize root systems.

PubMed

Lynch, Jonathan P

2013-07-01

A hypothetical ideotype is presented to optimize water and N acquisition by maize root systems. The overall premise is that soil resource acquisition is optimized by the coincidence of root foraging and resource availability in time and space. Since water and nitrate enter deeper soil strata over time and are initially depleted in surface soil strata, root systems with rapid exploitation of deep soil would optimize water and N capture in most maize production environments. • THE IDEOTYPE: Specific phenes that may contribute to rooting depth in maize include (a) a large diameter primary root with few but long laterals and tolerance of cold soil temperatures, (b) many seminal roots with shallow growth angles, small diameter, many laterals, and long root hairs, or as an alternative, an intermediate number of seminal roots with steep growth angles, large diameter, and few laterals coupled with abundant lateral branching of the initial crown roots, (c) an intermediate number of crown roots with steep growth angles, and few but long laterals, (d) one whorl of brace roots of high occupancy, having a growth angle that is slightly shallower than the growth angle for crown roots, with few but long laterals, (e) low cortical respiratory burden created by abundant cortical aerenchyma, large cortical cell size, an optimal number of cells per cortical file, and accelerated cortical senescence, (f) unresponsiveness of lateral branching to localized resource availability, and (g) low K(m) and high Vmax for nitrate uptake. Some elements of this ideotype have experimental support, others are hypothetical. Despite differences in N distribution between low-input and commercial maize production, this ideotype is applicable to low-input systems because of the importance of deep rooting for water acquisition. Many features of this ideotype are relevant to other cereal root systems and more generally to root systems of dicotyledonous crops.

Convergence of the effect of root hydraulic functioning and root hydraulic redistribution on ecosystem water and carbon balance across divergent forest ecosystems

NASA Astrophysics Data System (ADS)

domec, J.; King, J. S.; Ogée, J.; Noormets, A.; Warren, J.; Meinzer, F. C.; Sun, G.; Jordan-Meille, L.; Martineau, E.; Brooks, R. J.; Laclau, J.; Battie Laclau, P.; McNulty, S.

2012-12-01

INVITED ABSTRACT: Deep root water uptake and hydraulic redistribution (HR) play a major role in forest ecosystems during drought, but little is known about the impact of climate change on root-zone processes influencing HR and its consequences on water and carbon fluxes. Using data from two old growth sites in the western USA, two mature sites in the eastern USA, one site in southern Brazil, and simulations with the process-based model MuSICA, our objectives were to show that HR can 1) mitigate the effects of soil drying on root functioning, and 2) have important implications for carbon uptake and net ecosystem exchange (NEE). In a dry, old-growth ponderosa pine (USA) and a eucalyptus stand (Brazil) both characterized by deep sandy soils, HR limited the decline in root hydraulic conductivity and increased dry season tree transpiration (T) by up to 30%, which impacted NEE through major increases in gross primary productivity (GPP). The presence of deep-rooted trees did not necessarily imply high rates of HR unless soil texture allowed large water potential gradients to occur, as was the case in the wet old-growth Douglas-fir/mixed conifer stand. At the Duke mixed hardwood forest characterized by a shallow clay-loam soil, modeled HR was low but not negligible, representing annually up to 10% of T, and maintaining root conductance high. At this site, in the absence of HR, it was predicted that annual GPP would have been diminished by 7-19%. At the coastal loblolly pine plantation, characterized by deep organic soil, HR limited the decline in shallow root conductivity by more than 50% and increased dry season T by up to 40%, which increased net carbon gain by the ecosystem by about 400 gC m-2 yr-1, demonstrating the significance of HR in maintaining the stomatal conductance and assimilation capacity of the whole ecosystem. Under future climate conditions (elevated atmospheric [CO2] and temperature), HR is predicted to be reduced by up to 50%; reducing the resilience of trees to droughts. Under future conditions, T is predicted to stay the same at the Duke mixed hardwood forest, but to decline slightly at the coastal loblolly pine plantation and slightly increase at the old-growth ponderosa pine stand and the eucalyptus plantation. As a consequence, water use efficiency in all sites was predicted to improve dramatically under future climate conditions. Our simulations also showed that the negative effect of drier nights on HR would be greater under future climate conditions. Assuming no increase in stomatal control with increasing drier nights, increased vapor pressure deficit at night under future conditions was sufficient to drive significant nighttime T at all sites , which reduced HR, because the plant and the atmosphere became a sink for hydraulically redistributed water . We concluded that the predicted reductions in HR under future climate conditions are expected to play an important regulatory role in land-atmosphere interactions by affecting whole ecosystem carbon and water balance. We suggest that root distribution should be treated dynamically in response to climate change and that HR and its interactions with rooting depth and soil texture should be implemented in soil-vegetation-atmosphere transfer models.

Travel Time Tomographic Imaging of Shallow Fore-arc Basin Structure at the Cascadia Subduction Zone Offshore Washington and Oregon

NASA Astrophysics Data System (ADS)

Azarm, R.; Carton, H. D.; Carbotte, S. M.; Han, S.; Canales, J. P.; Nedimovic, M. R.

2016-12-01

We conduct a P-wave tomography study of shallow fore-arc basin structure at the Cascadia subduction zone using first-arrival travel times from two multi-channel seismic (MCS) profiles acquired with an 8-km long streamer in the frame of the 2012 Juan de Fuca Ridge to Trench program. The first profile extends offshore Gray's Harbor in Washington and the second extends offshore Oregon at the latitude of Hydrate ridge, with the fore-arc basin imaged below ˜60 and ˜70-km long shallow water (< 500 m) portions of these profiles, respectively. We use the travel time tomography method of VanAvendonk et al. [2004], which is based on the shortest path method for ray tracing, and iterative inversions driven by gradual reduction of the chi-square misfit (root mean square value of the difference between predicted and observed travel times normalized by pick uncertainty). We construct our starting model by hanging from the seafloor a 1D velocity profile based on interval velocities derived from semblance analysis of MCS data. Resolvability of the final model is assessed using checkerboard pattern tests with different anomaly sizes. We then compare our tomographically-derived velocity models to coincident seismic reflection images post-stack time migrated and converted to depth using our results. On the Washington shelf, where the fore-arc basin is segmented into three sub-basins, ray coverage mostly extends to ˜1.2-1.5 km below seafloor. Velocities in the shallowmost sediments show, at the large scale, a gradual decrease towards the shelf edge (from 2.1 to 1.8 km/s). At depth, regions devoid of clear reflections such as an ˜5 km large anticline core are associated with lower velocities than that obtained within mildly deformed sedimentary layers on either side (2.3 vs 2.7 km/s, measured at 1.2 km depth), suggesting the presence of localized fluid-rich regions within the basin. Analysis of the Oregon line is ongoing and results will be presented at the meeting.

Increased symplasmic permeability in barley root epidermal cells correlates with defects in root hair development

PubMed Central

Marzec, M; Muszynska, A; Melzer, M; Sas-Nowosielska, H; Kurczynska, E U; Wick, S

2014-01-01

It is well known that the process of plant cell differentiation depends on the symplasmic isolation of cells. Before starting the differentiation programme, the individual cell or group of cells should restrict symplasmic communication with neighbouring cells. We tested the symplasmic communication between epidermal cells in the different root zones of parental barley plants Hordeum vulgare L., cv. ‘Karat’ with normal root hair development, and two root hairless mutants (rhl1.a and rhl1.b). The results clearly show that symplasmic communication was limited during root hair differentiation in the parental variety, whereas in both root hairless mutants epidermal cells were still symplasmically connected in the corresponding root zone. This paper is the first report on the role of symplasmic isolation in barley root cell differentiation, and additionally shows that a disturbance in the restriction of symplasmic communication is present in root hairless mutants. PMID:23927737

The composite water and solute transport of barley (Hordeum vulgare) roots: effect of suberized barriers

PubMed Central

Ranathunge, Kosala; Kim, Yangmin X.; Wassmann, Friedrich; Kreszies, Tino; Zeisler, Viktoria

2017-01-01

Abstract Background and Aims Roots have complex anatomical structures, and certain localized cell layers develop suberized apoplastic barriers. The size and tightness of these barriers depend on the growth conditions and on the age of the root. Such complex anatomical structures result in a composite water and solute transport in roots. Methods Development of apoplastic barriers along barley seminal roots was detected using various staining methods, and the suberin amounts in the apical and basal zones were analysed using gas chromatography–mass spectometry (GC-MS). The hydraulic conductivity of roots (Lpr) and of cortical cells (Lpc) was measured using root and cell pressure probes. Key Results When grown in hydroponics, barley roots did not form an exodermis, even at their basal zones. However, they developed an endodermis. Endodermal Casparian bands first appeared as ‘dots’ as early as at 20 mm from the apex, whereas a patchy suberin lamellae appeared at 60 mm. The endodermal suberin accounted for the total suberin of the roots. The absolute amount in the basal zone was significantly higher than in the apical zone, which was inversely proportional to the Lpr. Comparison of Lpr and Lpc suggested that cell to cell pathways dominate for water transport in roots. However, the calculation of Lpr from Lpc showed that at least 26 % of water transport occurs through the apoplast. Roots had different solute permeabilities (Psr) and reflection coefficients (σsr) for the solutes used. The σsr was below unity for the solutes, which have virtually zero permeability for semi-permeable membranes. Conclusions Suberized endodermis significantly reduces Lpr of seminal roots. The water and solute transport across barley roots is composite in nature and they do not behave like ideal osmometers. The composite transport model should be extended by adding components arranged in series (cortex, endodermis) in addition to the currently included components arranged in parallel (apoplastic, cell to cell pathways). PMID:28065927

Using three-dimensional plant root architecture in models of shallow-slope stability.

PubMed

Danjon, Frédéric; Barker, David H; Drexhage, Michael; Stokes, Alexia

2008-05-01

The contribution of vegetation to shallow-slope stability is of major importance in landslide-prone regions. However, existing slope stability models use only limited plant root architectural parameters. This study aims to provide a chain of tools useful for determining the contribution of tree roots to soil reinforcement. Three-dimensional digitizing in situ was used to obtain accurate root system architecture data for mature Quercus alba in two forest stands. These data were used as input to tools developed, which analyse the spatial position of roots, topology and geometry. The contribution of roots to soil reinforcement was determined by calculating additional soil cohesion using the limit equilibrium model, and the factor of safety (FOS) using an existing slope stability model, Slip4Ex. Existing models may incorrectly estimate the additional soil cohesion provided by roots, as the spatial position of roots crossing the potential slip surface is usually not taken into account. However, most soil reinforcement by roots occurs close to the tree stem and is negligible at a distance >1.0 m from the tree, and therefore global values of FOS for a slope do not take into account local slippage along the slope. Within a forest stand on a landslide-prone slope, soil fixation by roots can be minimal between uniform rows of trees, leading to local soil slippage. Therefore, staggered rows of trees would improve overall slope stability, as trees would arrest the downward movement of soil. The chain of tools consisting of both software (free for non-commercial use) and functions available from the first author will enable a more accurate description and use of root architectural parameters in standard slope stability analyses.

Using Three-dimensional Plant Root Architecture in Models of Shallow-slope Stability

PubMed Central

Danjon, Frédéric; Barker, David H.; Drexhage, Michael; Stokes, Alexia

2008-01-01

Background The contribution of vegetation to shallow-slope stability is of major importance in landslide-prone regions. However, existing slope stability models use only limited plant root architectural parameters. This study aims to provide a chain of tools useful for determining the contribution of tree roots to soil reinforcement. Methods Three-dimensional digitizing in situ was used to obtain accurate root system architecture data for mature Quercus alba in two forest stands. These data were used as input to tools developed, which analyse the spatial position of roots, topology and geometry. The contribution of roots to soil reinforcement was determined by calculating additional soil cohesion using the limit equilibrium model, and the factor of safety (FOS) using an existing slope stability model, Slip4Ex. Key Results Existing models may incorrectly estimate the additional soil cohesion provided by roots, as the spatial position of roots crossing the potential slip surface is usually not taken into account. However, most soil reinforcement by roots occurs close to the tree stem and is negligible at a distance >1·0 m from the tree, and therefore global values of FOS for a slope do not take into account local slippage along the slope. Conclusions Within a forest stand on a landslide-prone slope, soil fixation by roots can be minimal between uniform rows of trees, leading to local soil slippage. Therefore, staggered rows of trees would improve overall slope stability, as trees would arrest the downward movement of soil. The chain of tools consisting of both software (free for non-commercial use) and functions available from the first author will enable a more accurate description and use of root architectural parameters in standard slope stability analyses. PMID:17766845

Root depth and morphology in response to soil drought: comparing ecological groups along the secondary succession in a tropical dry forest.

PubMed

Paz, Horacio; Pineda-García, Fernando; Pinzón-Pérez, Luisa F

2015-10-01

Root growth and morphology may play a core role in species-niche partitioning in highly diverse communities, especially along gradients of drought risk, such as that created along the secondary succession of tropical dry forests. We experimentally tested whether root foraging capacity, especially at depth, decreases from early successional species to old-growth forest species. We also tested for a trade-off between two mechanisms for delaying desiccation, the capacity to forage deeper in the soil and the capacity to store water in tissues, and explored whether successional groups separate along such a trade-off. We examined the growth and morphology of roots in response to a controlled-vertical gradient of soil water, among seedlings of 23 woody species dominant along the secondary succession in a tropical dry forest of Mexico. As predicted, successional species developed deeper and longer root systems than old-growth forest species in response to soil drought. In addition, shallow root systems were associated with high plant water storage and high water content per unit of tissue in stems and roots, while deep roots exhibited the opposite traits, suggesting a trade-off between the capacities for vertical foraging and water storage. Our results suggest that an increased capacity of roots to forage deeper for water is a trait that enables successional species to establish under the warm-dry conditions of the secondary succession, while shallow roots, associated with a higher water storage capacity, are restricted to the old-growth forest. Overall, we found evidence that the root depth-water storage trade-off may constrain tree species distribution along secondary succession.

Groundwater monitoring program plan and conceptual site model for the Al-Tuwaitha Nuclear Research Center in Iraq.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Copland, John Robin; Cochran, John Russell

2013-07-01

The Radiation Protection Center of the Iraqi Ministry of Environment is developing a groundwater monitoring program (GMP) for the Al-Tuwaitha Nuclear Research Center located near Baghdad, Iraq. The Al-Tuwaitha Nuclear Research Center was established in about 1960 and is currently being cleaned-up and decommissioned by Iraqs Ministry of Science and Technology. This Groundwater Monitoring Program Plan (GMPP) and Conceptual Site Model (CSM) support the Radiation Protection Center by providing: A CSM describing the hydrogeologic regime and contaminant issues, recommendations for future groundwater characterization activities, and descriptions of the organizational elements of a groundwater monitoring program. The Conceptual Site Model identifiesmore » a number of potential sources of groundwater contamination at Al-Tuwaitha. The model also identifies two water-bearing zones (a shallow groundwater zone and a regional aquifer). The depth to the shallow groundwater zone varies from approximately 7 to 10 meters (m) across the facility. The shallow groundwater zone is composed of a layer of silty sand and fine sand that does not extend laterally across the entire facility. An approximately 4-m thick layer of clay underlies the shallow groundwater zone. The depth to the regional aquifer varies from approximately 14 to 17 m across the facility. The regional aquifer is composed of interfingering layers of silty sand, fine-grained sand, and medium-grained sand. Based on the limited analyses described in this report, there is no severe contamination of the groundwater at Al-Tuwaitha with radioactive constituents. However, significant data gaps exist and this plan recommends the installation of additional groundwater monitoring wells and conducting additional types of radiological and chemical analyses.« less

Modeling the Hydraulics of Root Growth in Three Dimensions with Phloem Water Sources1[C][OA

PubMed Central

Wiegers, Brandy S.; Cheer, Angela Y.; Silk, Wendy K.

2009-01-01

Primary growth is characterized by cell expansion facilitated by water uptake generating hydrostatic (turgor) pressure to inflate the cell, stretching the rigid cell walls. The multiple source theory of root growth hypothesizes that root growth involves transport of water both from the soil surrounding the growth zone and from the mature tissue higher in the root via phloem and protophloem. Here, protophloem water sources are used as boundary conditions in a classical, three-dimensional model of growth-sustaining water potentials in primary roots. The model predicts small radial gradients in water potential, with a significant longitudinal gradient. The results improve the agreement of theory with empirical studies for water potential in the primary growth zone of roots of maize (Zea mays). A sensitivity analysis quantifies the functional importance of apical phloem differentiation in permitting growth and reveals that the presence of phloem water sources makes the growth-sustaining water relations of the root relatively insensitive to changes in root radius and hydraulic conductivity. Adaptation to drought and other environmental stresses is predicted to involve more apical differentiation of phloem and/or higher phloem delivery rates to the growth zone. PMID:19542299

Modeling the hydraulics of root growth in three dimensions with phloem water sources.

PubMed

Wiegers, Brandy S; Cheer, Angela Y; Silk, Wendy K

2009-08-01

Primary growth is characterized by cell expansion facilitated by water uptake generating hydrostatic (turgor) pressure to inflate the cell, stretching the rigid cell walls. The multiple source theory of root growth hypothesizes that root growth involves transport of water both from the soil surrounding the growth zone and from the mature tissue higher in the root via phloem and protophloem. Here, protophloem water sources are used as boundary conditions in a classical, three-dimensional model of growth-sustaining water potentials in primary roots. The model predicts small radial gradients in water potential, with a significant longitudinal gradient. The results improve the agreement of theory with empirical studies for water potential in the primary growth zone of roots of maize (Zea mays). A sensitivity analysis quantifies the functional importance of apical phloem differentiation in permitting growth and reveals that the presence of phloem water sources makes the growth-sustaining water relations of the root relatively insensitive to changes in root radius and hydraulic conductivity. Adaptation to drought and other environmental stresses is predicted to involve more apical differentiation of phloem and/or higher phloem delivery rates to the growth zone.

Contrasting physiological effects of partial root zone drying in field-grown grapevine (Vitis vinifera L. cv. Monastrell) according to total soil water availability

PubMed Central

Romero, Pascual; Dodd, Ian C.; Martinez-Cutillas, Adrian

2012-01-01

Different spatial distributions of soil moisture were imposed on field-grown grapevines by applying the same irrigation volumes to the entire (DI; deficit irrigation) or part of the (PRD; partial root zone drying) root zone. Five treatments were applied: controls irrigated at 60% ETc (crop evapotranspiration) for the whole season (308 mm year−1); DI-1 and PRD-1 that received the same irrigation as controls before fruit set, 30% ETc from fruit set to harvest and 45% ETc post-harvest (192 mm year−1); and DI-2 and PRD-2 that were the same, except that 15% ETc was applied from fruit set to harvest (142 mm year−1). Compared with DI-1, PRD-1 maintained higher leaf area post-veraison and increased root water uptake, whole-plant hydraulic conductance, leaf transpiration, stomatal conductance, and photosynthesis, but decreased intrinsic gas exchange efficiency without causing differences in leaf xylem abscisic acid (ABA) concentration. Compared with DI-2, PRD-2 increased leaf xylem ABA concentration and decreased root water uptake, whole-plant hydraulic conductance, leaf transpiration, stomatal conductance, and photosynthesis, mainly at the beginning of PRD cycles. Distinctive PRD effects (e.g. greater stomatal closure) depended on the volumetric soil water content of the wet root zone, as predicted from a model of root-to-shoot ABA signalling. PMID:22451721

Plant-Sediment Interactions in Salt Marshes - An Optode Imaging Study of O2, pH, and CO 2 Gradients in the Rhizosphere.

PubMed

Koop-Jakobsen, Ketil; Mueller, Peter; Meier, Robert J; Liebsch, Gregor; Jensen, Kai

2018-01-01

In many wetland plants, belowground transport of O 2 via aerenchyma tissue and subsequent O 2 loss across root surfaces generates small oxic root zones at depth in the rhizosphere with important consequences for carbon and nutrient cycling. This study demonstrates how roots of the intertidal salt-marsh plant Spartina anglica affect not only O 2 , but also pH and CO 2 dynamics, resulting in distinct gradients of O 2 , pH, and CO 2 in the rhizosphere. A novel planar optode system (VisiSens TD ® , PreSens GmbH) was used for taking high-resolution 2D-images of the O 2 , pH, and CO 2 distribution around roots during alternating light-dark cycles. Belowground sediment oxygenation was detected in the immediate vicinity of the roots, resulting in oxic root zones with a 1.7 mm radius from the root surface. CO 2 accumulated around the roots, reaching a concentration up to threefold higher than the background concentration, and generally affected a larger area within a radius of 12.6 mm from the root surface. This contributed to a lowering of pH by 0.6 units around the roots. The O 2 , pH, and CO 2 distribution was recorded on the same individual roots over diurnal light cycles in order to investigate the interlinkage between sediment oxygenation and CO 2 and pH patterns. In the rhizosphere, oxic root zones showed higher oxygen concentrations during illumination of the aboveground biomass. In darkness, intraspecific differences were observed, where some plants maintained oxic root zones in darkness, while others did not. However, the temporal variation in sediment oxygenation was not reflected in the temporal variations of pH and CO 2 around the roots, which were unaffected by changing light conditions at all times. This demonstrates that plant-mediated sediment oxygenation fueling microbial decomposition and chemical oxidation has limited impact on the dynamics of pH and CO 2 in S. anglica rhizospheres, which may in turn be controlled by other processes such as root respiration and root exudation.

Bidirectional Response of Runoff to Changes in Snowmelt Rate, Timing, and Amount

NASA Astrophysics Data System (ADS)

Barnhart, T. B.; Molotch, N. P.; Tague, C.

2016-12-01

The mountain snowpack is important for runoff generation across the western United States and for one sixth of Earth's population. Climate change induced near surface warming alters the amount of precipitation that falls as snow causing changes in the amount, rate, and timing of snowmelt. Recent work links snowmelt rate to streamflow production across the western United States. Snowmelt rate has also been linked to snowpack magnitude and snowmelt timing. This work seeks to disentangle the relationships between snowmelt rate, timing, and amount to reveal the dominant streamflow generating factor and the physical mechanism through which snowmelt becomes runoff. We use co-located observations of evapotranspiration and snowmelt from Niwot Ridge, CO (3023 m), the Valles Caldera, NM (3030 m), and Providence Creek, CA (2015 m) as well as the Regional Hydro-Ecologic Simulation System (RHESSys) to assess the linkage between snowmelt rate, amount, timing, and runoff. We conducted 100,000 RHESSys simulations at each site varying the timing, amount, and rate of snowmelt based on the observational record. Analyses of observational data show that years with large peak SWE partition more snowmelt to runoff than to evapotranspiration (r2=0.82, p=0.005). For example water year 2011 with a peak SWE of 0.43 m and a snowmelt rate of 0.62 cm d-1 partitioned 34% of snowmelt to ET. Conversely, water year 2006 with a peak SWE of 0.32 m and a snowmelt rate of 0.1 cm d-1 partitioned 54% of snowmelt to ET. Our simulation results show a bidirectional response between snowmelt rate and timing and runoff efficiency where early, slow snowmelt results in a low runoff efficiency while early, rapid snowmelt results in high runoff efficiency because of a mismatch in water availability and demand (a). Simulation results show a strong relationship between runoff efficiency and snowmelt suggesting that rapid snowmelt is better able to bring the root zone to field capacity and move water to the shallow groundwater system. Indeed, there is strong correspondence between runoff efficiency and root zone drainage showing that rapid snowmelt is better able to generate runoff than slow snowmelt by inducing recharge below the root zone (b). Furthermore, as climate warming decreases the mountain snowpack and causes earlier snowmelt, runoff is likely to decrease.

The Abundance of Pink-Pigmented Facultative Methylotrophs in the Root Zone of Plant Species in Invaded Coastal Sage Scrub Habitat

PubMed Central

Irvine, Irina C.; Brigham, Christy A.; Suding, Katharine N.; Martiny, Jennifer B. H.

2012-01-01

Pink-pigmented facultative methylotrophic bacteria (PPFMs) are associated with the roots, leaves and seeds of most terrestrial plants and utilize volatile C1 compounds such as methanol generated by growing plants during cell division. PPFMs have been well studied in agricultural systems due to their importance in crop seed germination, yield, pathogen resistance and drought stress tolerance. In contrast, little is known about the PPFM abundance and diversity in natural ecosystems, let alone their interactions with non-crop species. Here we surveyed PPFM abundance in the root zone soil of 5 native and 5 invasive plant species along ten invasion gradients in Southern California coastal sage scrub habitat. PPFMs were present in every soil sample and ranged in abundance from 102 to 105 CFU/g dry soil. This abundance varied significantly among plant species. PPFM abundance was 50% higher in the root zones of annual or biennial species (many invasives) than perennial species (all natives). Further, PPFM abundance appears to be influenced by the plant community beyond the root zone; pure stands of either native or invasive species had 50% more PPFMs than mixed species stands. In sum, PPFM abundance in the root zone of coastal sage scrub plants is influenced by both the immediate and surrounding plant communities. The results also suggest that PPFMs are a good target for future work on plant-microorganism feedbacks in natural ecosystems. PMID:22383990

The abundance of pink-pigmented facultative methylotrophs in the root zone of plant species in invaded coastal sage scrub habitat.

PubMed

Irvine, Irina C; Brigham, Christy A; Suding, Katharine N; Martiny, Jennifer B H

2012-01-01

Pink-pigmented facultative methylotrophic bacteria (PPFMs) are associated with the roots, leaves and seeds of most terrestrial plants and utilize volatile C(1) compounds such as methanol generated by growing plants during cell division. PPFMs have been well studied in agricultural systems due to their importance in crop seed germination, yield, pathogen resistance and drought stress tolerance. In contrast, little is known about the PPFM abundance and diversity in natural ecosystems, let alone their interactions with non-crop species. Here we surveyed PPFM abundance in the root zone soil of 5 native and 5 invasive plant species along ten invasion gradients in Southern California coastal sage scrub habitat. PPFMs were present in every soil sample and ranged in abundance from 10(2) to 10(5) CFU/g dry soil. This abundance varied significantly among plant species. PPFM abundance was 50% higher in the root zones of annual or biennial species (many invasives) than perennial species (all natives). Further, PPFM abundance appears to be influenced by the plant community beyond the root zone; pure stands of either native or invasive species had 50% more PPFMs than mixed species stands. In sum, PPFM abundance in the root zone of coastal sage scrub plants is influenced by both the immediate and surrounding plant communities. The results also suggest that PPFMs are a good target for future work on plant-microorganism feedbacks in natural ecosystems.

Process-based modeling of temperature and water profiles in the seedling recruitment zone: Part I. Model validation

USDA-ARS?s Scientific Manuscript database

Process-based modeling provides detailed spatial and temporal information of the soil environment in the shallow seedling recruitment zone across field topography where measurements of soil temperature and water may not sufficiently describe the zone. Hourly temperature and water profiles within the...

Separation of abscission zone cells in detached Azolla roots depends on apoplastic pH.

PubMed

Fukuda, Kazuma; Yamada, Yoshiya; Miyamoto, Kensuke; Ueda, Junichi; Uheda, Eiji

2013-01-01

In studies on the mechanism of cell separation during abscission, little attention has been paid to the apoplastic environment. We found that the apoplastic pH surrounding abscission zone cells in detached roots of the water fern Azolla plays a major role in cell separation. Abscission zone cells of detached Azolla roots were separated rapidly in a buffer at neutral pH and slowly in a buffer at pH below 4.0. However, cell separation rarely occurred at pH 5.0-5.5. Light and electron microscopy revealed that cell separation was caused by a degradation of the middle lamella between abscission zone cells at both pH values, neutral and below 4.0. Low temperature and papain treatment inhibited cell separation. Enzyme(s) in the cell wall of the abscission zone cells might be involved in the degradation of the pectin of the middle lamella and the resultant, pH-dependent cell separation. By contrast, in Phaseolus leaf petioles, unlike Azolla roots, cell separation was slow and increased only at acidic pH. The rapid cell separation, as observed in Azolla roots at neutral pH, did not occur. Indirect immunofluorescence microscopy, using anti-pectin monoclonal antibodies, revealed that the cell wall pectins of the abscission zone cells of Azolla roots and Phaseolus leaf petioles looked similar and changed similarly during cell separation. Thus, the pH-related differences in cell separation mechanisms of Azolla and Phaseolus might not be due to differences in cell wall pectin, but to differences in cell wall-located enzymatic activities responsible for the degradation of pectic substances. A possible enzyme system is discussed. Copyright © 2012 Elsevier GmbH. All rights reserved.

Fluorescence Resonance Energy Transfer-Sensitized Emission of Yellow Cameleon 3.60 Reveals Root Zone-Specific Calcium Signatures in Arabidopsis in Response to Aluminum and Other Trivalent Cations1[W][OA

PubMed Central

Rincón-Zachary, Magaly; Teaster, Neal D.; Sparks, J. Alan; Valster, Aline H.; Motes, Christy M.; Blancaflor, Elison B.

2010-01-01

Fluorescence resonance energy transfer-sensitized emission of the yellow cameleon 3.60 was used to study the dynamics of cytoplasmic calcium ([Ca2+]cyt) in different zones of living Arabidopsis (Arabidopsis thaliana) roots. Transient elevations of [Ca2+]cyt were observed in response to glutamic acid (Glu), ATP, and aluminum (Al3+). Each chemical induced a [Ca2+]cyt signature that differed among the three treatments in regard to the onset, duration, and shape of the response. Glu and ATP triggered patterns of [Ca2+]cyt increases that were similar among the different root zones, whereas Al3+ evoked [Ca2+]cyt transients that had monophasic and biphasic shapes, most notably in the root transition zone. The Al3+-induced [Ca2+]cyt increases generally started in the maturation zone and propagated toward the cap, while the earliest [Ca2+]cyt response after Glu or ATP treatment occurred in an area that encompassed the meristem and elongation zone. The biphasic [Ca2+]cyt signature resulting from Al3+ treatment originated mostly from cortical cells located at 300 to 500 μ m from the root tip, which could be triggered in part through ligand-gated Glu receptors. Lanthanum and gadolinium, cations commonly used as Ca2+ channel blockers, elicited [Ca2+]cyt responses similar to those induced by Al3+. The trivalent ion-induced [Ca2+]cyt signatures in roots of an Al3+-resistant and an Al3+-sensitive mutant were similar to those of wild-type plants, indicating that the early [Ca2+]cyt changes we report here may not be tightly linked to Al3+ toxicity but rather to a general response to trivalent cations. PMID:20053711

Fluorescence resonance energy transfer-sensitized emission of yellow cameleon 3.60 reveals root zone-specific calcium signatures in Arabidopsis in response to aluminum and other trivalent cations.

PubMed

Rincón-Zachary, Magaly; Teaster, Neal D; Sparks, J Alan; Valster, Aline H; Motes, Christy M; Blancaflor, Elison B

2010-03-01

Fluorescence resonance energy transfer-sensitized emission of the yellow cameleon 3.60 was used to study the dynamics of cytoplasmic calcium ([Ca(2+)](cyt)) in different zones of living Arabidopsis (Arabidopsis thaliana) roots. Transient elevations of [Ca(2+)](cyt) were observed in response to glutamic acid (Glu), ATP, and aluminum (Al(3+)). Each chemical induced a [Ca(2+)](cyt) signature that differed among the three treatments in regard to the onset, duration, and shape of the response. Glu and ATP triggered patterns of [Ca(2+)](cyt) increases that were similar among the different root zones, whereas Al(3+) evoked [Ca(2+)](cyt) transients that had monophasic and biphasic shapes, most notably in the root transition zone. The Al(3+)-induced [Ca(2+)](cyt) increases generally started in the maturation zone and propagated toward the cap, while the earliest [Ca(2+)](cyt) response after Glu or ATP treatment occurred in an area that encompassed the meristem and elongation zone. The biphasic [Ca(2+)](cyt) signature resulting from Al(3+) treatment originated mostly from cortical cells located at 300 to 500 mu m from the root tip, which could be triggered in part through ligand-gated Glu receptors. Lanthanum and gadolinium, cations commonly used as Ca(2+) channel blockers, elicited [Ca(2+)](cyt) responses similar to those induced by Al(3+). The trivalent ion-induced [Ca(2+)](cyt) signatures in roots of an Al(3+)-resistant and an Al(3+)-sensitive mutant were similar to those of wild-type plants, indicating that the early [Ca(2+)](cyt) changes we report here may not be tightly linked to Al(3+) toxicity but rather to a general response to trivalent cations.

An in situ approach to detect tree root ecology: linking ground-penetrating radar imaging to isotope-derived water acquisition zones

PubMed Central

Isaac, Marney E; Anglaaere, Luke C N

2013-01-01

Tree root distribution and activity are determinants of belowground competition. However, studying root response to environmental and management conditions remains logistically challenging. Methodologically, nondestructive in situ tree root ecology analysis has lagged. In this study, we tested a nondestructive approach to determine tree coarse root architecture and function of a perennial tree crop, Theobroma cacao L., at two edaphically contrasting sites (sandstone and phyllite–granite derived soils) in Ghana, West Africa. We detected coarse root vertical distribution using ground-penetrating radar and root activity via soil water acquisition using isotopic matching of δ18O plant and soil signatures. Coarse roots were detected to a depth of 50 cm, however, intraspecifc coarse root vertical distribution was modified by edaphic conditions. Soil δ18O isotopic signature declined with depth, providing conditions for plant–soil δ18O isotopic matching. This pattern held only under sandstone conditions where water acquisition zones were identifiably narrow in the 10–20 cm depth but broader under phyllite–granite conditions, presumably due to resource patchiness. Detected coarse root count by depth and measured fine root density were strongly correlated as were detected coarse root count and identified water acquisition zones, thus validating root detection capability of ground-penetrating radar, but exclusively on sandstone soils. This approach was able to characterize trends between intraspecific root architecture and edaphic-dependent resource availability, however, limited by site conditions. This study successfully demonstrates a new approach for in situ root studies that moves beyond invasive point sampling to nondestructive detection of root architecture and function. We discuss the transfer of such an approach to answer root ecology questions in various tree-based landscapes. PMID:23762519

SMAP Level 4 Surface and Root Zone Soil Moisture

NASA Technical Reports Server (NTRS)

Reichle, R.; De Lannoy, G.; Liu, Q.; Ardizzone, J.; Kimball, J.; Koster, R.

2017-01-01

The SMAP Level 4 soil moisture (L4_SM) product provides global estimates of surface and root zone soil moisture, along with other land surface variables and their error estimates. These estimates are obtained through assimilation of SMAP brightness temperature observations into the Goddard Earth Observing System (GEOS-5) land surface model. The L4_SM product is provided at 9 km spatial and 3-hourly temporal resolution and with about 2.5 day latency. The soil moisture and temperature estimates in the L4_SM product are validated against in situ observations. The L4_SM product meets the required target uncertainty of 0.04 m(exp. 3)m(exp. -3), measured in terms of unbiased root-mean-square-error, for both surface and root zone soil moisture.

A multidisciplinary methodological approach for slope stability assessment of an area prone to shallow landslides

NASA Astrophysics Data System (ADS)

Bordoni, Massimiliano; Meisina, Claudia; Valentino, Roberto; Bittelli, Marco; Battista Bischetti, Gian; Vercesi, Alberto; Chersich, Silvia; Giuseppina Persichillo, Maria

2016-04-01

Rainfall-induced shallow landslides are widespread slope instabilities phenomena in several hilly and mountainous contexts all over the world. Due to their high density of diffusion also in small areas, they can provoke important damages to terrains, infrastructures, buildings, and, sometimes, loss of human lives. Shallow landslides affect superficial soils of limited thickness (generally lower than 2 m), located above weathered or not bedrock levels. Their triggering mechanism is strictly linked to the hydrological response of the soils to rainfall events. Thus, it becomes fundamental a comprehensive analysis of the soil properties which can influence the susceptibility of a slope to shallow landslides. In this study, a multidisciplinary approach was followed for the characterization of the soils and the individuation of the triggering conditions in an area particularly prone to shallow failures, for slope stability assessment. This area corresponded to the hilly sector of North-Eastern Oltrepò Pavese (Lombardy Region, Northern Italy), where the density of shallow landslides is really high, reaching more than 36 landslides per km2. The soils of the study area were analyzed through a multidisciplinary characterization, which took into account for the main geotechnical, mechanical and mineralogical parameters and also for the main pedological features of the materials. This approach allowed for identifying the main features and the horizons which could influence the soil behavior in relation to the conditions that are preparatory to shallow landslides development. In a test-site slope, representative of the main geomorphological, geological and landslides distribution characteristics typical of the study area, a continuous in time monitoring of meteorological (rainfall amount, air temperature, air humidity, atmospheric pressure, net solar radiation, wind speed and direction) and hydrological (soil water content, pore water pressure) parameters was implemented. In this way, the triggering mechanism of shallow failures in the study area was identified and the effects of the different hydrological parameters on slope stability assessment through a simplified physically-based model (Lu and Godt's model) was quantified. In several slopes, representative of the main land uses (cultivated vineyards, abandoned vineyards, shrub lands, woodlands) of the study area, soil root reinforcement of the vegetation of the slopes was measured since root density and root tensile strength. This parameter was, then, integrated in the same simplified physically-based model (Lu and Godt's model), in order to improve the assessment of slope instabilities. Moreover, this analysis allowed for a better identification of the land use classes more susceptible to shallow landslides, furnishing an important tool for land planning.

Shifting reef fish assemblages along a depth gradient in Pohnpei, Micronesia

PubMed Central

Copus, Joshua M.; Coffey, Daniel M.; Whitton, Robert K.; Bowen, Brian W.

2018-01-01

Mesophotic coral ecosystems (MCEs) continue to be understudied, especially in island locations spread across the Indo-Pacific Ocean. Pohnpei is the largest island in the Federated States of Micronesia, with a well-developed barrier reef, and steep slopes that descend to more than 1,000 m. Here we conducted visual surveys along a depth gradient of 0 to 60 m in addition to video surveys that extend to 130 m, with 72 belt transects and 12 roving surveys using closed-circuit rebreathers, to test for changes in reef fish composition from shallow to mesophotic depths. We observed 304 fish species across 47 families with the majority confined to shallow habitat. Taxonomic and trophic positions at 30 m showed similar compositions when compared against all other depths. However, assemblages were comprised of a distinct shallow (<30 m) and deep (>30 m) group, suggesting 30 m as a transition zone between these communities. Shallow specialists had a high probability of being herbivores and deep specialists had a higher probability of being planktivores. Acanthuridae (surgeonfishes), Holocentridae (soldierfishes), and Labridae (wrasses) were associated primarily with shallow habitat, while Pomacentridae (damselfishes) and Serranidae (groupers) were associated with deep habitat. Four species may indicate Central Pacific mesophotic habitat: Chromis circumaurea, Luzonichthys seaver, Odontanthias borbonius, and an undescribed slopefish (Symphysanodon sp.). This study supports the 30 m depth profile as a transition zone between shallow and mesophotic ecosystems (consistent with accepted definitions of MCEs), with evidence of multiple transition zones below 30 m. Disturbances restricted to either region are not likely to immediately impact the other and both ecosystems should be considered separately in management of reefs near human population centers. PMID:29707432

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions.

PubMed

Uga, Yusaku; Sugimoto, Kazuhiko; Ogawa, Satoshi; Rane, Jagadish; Ishitani, Manabu; Hara, Naho; Kitomi, Yuka; Inukai, Yoshiaki; Ono, Kazuko; Kanno, Noriko; Inoue, Haruhiko; Takehisa, Hinako; Motoyama, Ritsuko; Nagamura, Yoshiaki; Wu, Jianzhong; Matsumoto, Takashi; Takai, Toshiyuki; Okuno, Kazutoshi; Yano, Masahiro

2013-09-01

The genetic improvement of drought resistance is essential for stable and adequate crop production in drought-prone areas. Here we demonstrate that alteration of root system architecture improves drought avoidance through the cloning and characterization of DEEPER ROOTING 1 (DRO1), a rice quantitative trait locus controlling root growth angle. DRO1 is negatively regulated by auxin and is involved in cell elongation in the root tip that causes asymmetric root growth and downward bending of the root in response to gravity. Higher expression of DRO1 increases the root growth angle, whereby roots grow in a more downward direction. Introducing DRO1 into a shallow-rooting rice cultivar by backcrossing enabled the resulting line to avoid drought by increasing deep rooting, which maintained high yield performance under drought conditions relative to the recipient cultivar. Our experiments suggest that control of root system architecture will contribute to drought avoidance in crops.

Kilauea east rift zone magmatism: An episode 54 perspective

USGS Publications Warehouse

Thornber, C.R.; Heliker, C.; Sherrod, D.R.; Kauahikaua, J.P.; Miklius, Asta; Okubo, P.G.; Trusdell, F.A.; Budahn, J.R.; Ridley, W.I.; Meeker, G.P.

2003-01-01

On January 29 30, 1997, prolonged steady-state effusion of lava from Pu'u'O'o was briefly disrupted by shallow extension beneath Napau Crater, 1 4 km uprift of the active Kilauea vent. A 23-h-long eruption (episode 54) ensued from fissures that were overlapping or en echelon with eruptive fissures formed during episode 1 in 1983 and those of earlier rift zone eruptions in 1963 and 1968. Combined geophysical and petrologic data for the 1994 1999 eruptive interval, including episode 54, reveal a variety of shallow magmatic conditions that persist in association with prolonged rift zone eruption. Near-vent lava samples document a significant range in composition, temperature and crystallinity of pre-eruptive magma. As supported by phenocryst liquid relations and Kilauea mineral thermometers established herein, the rift zone extension that led to episode 54 resulted in mixture of near-cotectic magma with discrete magma bodies cooled to ???1100??C. Mixing models indicate that magmas isolated beneath Napau Crater since 1963 and 1968 constituted 32 65% of the hybrid mixtures erupted during episode 54. Geophysical measurements support passive displacement of open-system magma along the active east rift conduit into closed-system rift-reservoirs along a shallow zone of extension. Geophysical and petrologic data for early episode 55 document the gradual flushing of episode 54 related magma during magmatic recharge of the edifice.

Fate and origin of 1,2 - dichloropropane in an unconfined shallow aquifer

USGS Publications Warehouse

Tesoriero, Anthony J.; Loffler, F.E.; Liebscher, Hugh

2001-01-01

A shallow aquifer with different redox zones overlain by intensive agricultural activity was monitored for the occurrence of 1,2-dichloropropane (DCP) to assess the fate and origin of this pollutant. DCP was detected more frequently in groundwater samples collected in aerobic and nitrate-reducing zones than those collected from iron-reducing zones. Simulated DCP concentrations for groundwater entering an iron-reducing zone were calculated from a fate and transport model that included dispersion, sorption, and hydrolysis but not degradation. Simulated concentrations were well in excess of measured values, suggesting that microbial degradation occurred in the iron-reducing zone. Microcosm experiments were conducted using aquifer samples collected from iron-reducing and aerobic zones to evaluate the potential for microbial degradation of DCP and to explain field observations. Hydrogenolysis of DCP and production of monochlorinated propanes in microcosm experiments occurred only with aquifer materials collected from the iron-reducing zone, and no dechlorination was observed in microcosms established with aquifer materials collected from the aerobic zones. Careful analyses of the DCP/1,2,2-trichloropropane ratios in groundwater indicated that older fumigant formulations were responsible for the high levels of DCP present in this aquifer.

Effects of co-inoculation with arbuscular mycorrhizal fungi and rhizobia on soybean growth as related to root architecture and availability of N and P.

PubMed

Wang, Xiurong; Pan, Qiang; Chen, Fengxian; Yan, Xiaolong; Liao, Hong

2011-04-01

Soybean plants can form tripartite symbiotic associations with rhizobia and arbuscular mycorrhizal (AM) fungi, but little is known about effects of co-inoculation with rhizobia and AM fungi on plant growth, or their relationships to root architecture as well as nitrogen (N) and phosphorus (P) availability. In the present study, two soybean genotypes contrasting in root architecture were grown in a field experiment to evaluate relationships among soybean root architecture, AMF colonization, and nodulation under natural conditions. Additionally, a soil pot experiment in greenhouse was conducted to investigate the effects of co-inoculation with rhizobia and AM fungi on soybean growth, and uptake of N and P. Our results indicated that there was a complementary relationship between root architecture and AMF colonization in the field. The deep root soybean genotype had greater AMF colonization at low P, but better nodulation with high P supply than the shallow root genotype. A synergistic relationship dependent on N and P status exists between rhizobia and AM fungi on soybean growth. Co-inoculation with rhizobia and AM fungi significantly increased soybean growth under low P and/or low N conditions as indicated by increased shoot dry weight, along with plant N and P content. There were no significant effects of inoculation under adequate N and P conditions. Furthermore, the effects of co-inoculation were related to root architecture. The deep root genotype, HN112, benefited more from co-inoculation than the shallow root genotype, HN89. Our results elucidate new insights into the relationship between rhizobia, AM fungi, and plant growth under limitation of multiple nutrients, and thereby provides a theoretical basis for application of co-inoculation in field-grown soybean.

Rhizosphere hydrophobicity: A positive trait in the competition for water.

PubMed

Zeppenfeld, Thorsten; Balkenhol, Niko; Kóvacs, Kristóf; Carminati, Andrea

2017-01-01

The ability to acquire water from the soil is a major driver in interspecific plant competition and it depends on several root functional traits. One of these traits is the excretion of gel-like compounds (mucilage) that modify physical soil properties. Mucilage secreted by roots becomes hydrophobic upon drying, impedes the rewetting of the soil close to the root, the so called rhizosphere, and reduces water availability to plants. The function of rhizosphere hydrophobicity is not easily understandable when looking at a single plant, but it may constitute a competitive advantage at the ecosystem level. We hypothesize that by making the top soil hydrophobic, deep-rooted plants avoid competititon with shallow-rooted plants. To test this hypothesis we used an individual-based model to simulate water uptake and growth of two virtual plant species, one deep-rooted plant capable of making the soil hydrophobic and a shallow-rooted plant. We ran scenarios with different precipitation regimes ranging from dry to wet (350, 700, and 1400 mm total annual precipitation) and from high to low precipitation frequencies (1, 7, and 14 days). Plant species abundance and biomass were chosen as indicators for competitiveness of plant species. At constant precipitation frequency mucilage hydrophobicity lead to a benefit in biomass and abundance of the tap-rooted population. Under wet conditions this effect diminished and tap-rooted plants were less productive. Without this trait both species coexisted. The effect of root exudation trait remained constant under different precipitation frequencies. This study shows that mucilage secretion is a competitive trait for the acquisition of water. This advantage is achieved by the modification of the soil hydraulic properties and specifically by inducing water repellency in soil regions which are shared with other species.

Rhizosphere hydrophobicity: A positive trait in the competition for water

PubMed Central

Balkenhol, Niko; Kóvacs, Kristóf; Carminati, Andrea

2017-01-01

The ability to acquire water from the soil is a major driver in interspecific plant competition and it depends on several root functional traits. One of these traits is the excretion of gel-like compounds (mucilage) that modify physical soil properties. Mucilage secreted by roots becomes hydrophobic upon drying, impedes the rewetting of the soil close to the root, the so called rhizosphere, and reduces water availability to plants. The function of rhizosphere hydrophobicity is not easily understandable when looking at a single plant, but it may constitute a competitive advantage at the ecosystem level. We hypothesize that by making the top soil hydrophobic, deep-rooted plants avoid competititon with shallow-rooted plants. To test this hypothesis we used an individual-based model to simulate water uptake and growth of two virtual plant species, one deep-rooted plant capable of making the soil hydrophobic and a shallow-rooted plant. We ran scenarios with different precipitation regimes ranging from dry to wet (350, 700, and 1400 mm total annual precipitation) and from high to low precipitation frequencies (1, 7, and 14 days). Plant species abundance and biomass were chosen as indicators for competitiveness of plant species. At constant precipitation frequency mucilage hydrophobicity lead to a benefit in biomass and abundance of the tap-rooted population. Under wet conditions this effect diminished and tap-rooted plants were less productive. Without this trait both species coexisted. The effect of root exudation trait remained constant under different precipitation frequencies. This study shows that mucilage secretion is a competitive trait for the acquisition of water. This advantage is achieved by the modification of the soil hydraulic properties and specifically by inducing water repellency in soil regions which are shared with other species. PMID:28753673

The role of nurse functional types in seedling recruitment dynamics of alternative states in rangelands

NASA Astrophysics Data System (ADS)

López, Dardo R.; Cavallero, Laura

2017-02-01

In arid ecosystems, recruitment dynamics are limited by harsh environmental conditions and greatly depend on the net outcome of the balance between facilitation and competition. This outcome can change as a consequence of degradation caused by livestock overgrazing. Also, distinct plant species may show a differential response to a common neighbour under the same environmental conditions. Therefore, ecosystem degradation could affect the net balance of plant-plant interactions, which can also depend on the functional traits of potential nurse species. The aim of this study is to assess the influence of alternative degradation states on (i) the density of seedlings of perennial species emerging in four microsite types, and on (ii) the relative interaction intensity (RII) between seedlings and potential nurses belonging to three functional types (deep- and shallow-rooted shrubs, and tussock grasses). During three years, we recorded seedling density of perennial species in four alternative degradation states in grass-shrubby steppes from northwestern Patagonia. The density of emerged seedlings of perennial species decreased sharply as degradation increased, showing non-linear responses in most microsites. Seedling density underneath deep-rooted shrubs was higher than underneath shallow-rooted shrubs and tussock grasses. Also, deep-rooted shrubs were the only functional type that recorded seedling emergence in highly degraded states. Deep-rooted shrubs had facilitative effects on the seedlings emerging and surviving underneath them, independently of ecosystem degradation. In contrast, RII between shallow-rooted shrubs and recently emerged seedlings, switched from positive effects in the less degraded states, to negative effects in the most degraded state. Tussock grasses recorded the weakest intensity of facilitative interactions with recently emerged seedlings, switching to competitive interactions as degradation increased. Our results suggest that species with key functional traits should be considered in management and restoration plans for rangelands with different degradation levels, since they have a strong influence in the net outcome of plant-plant interactions and in the recruitment dynamics of arid ecosystems.

Shallow Environmentalism: A Preliminary Eco-Critical Discourse Analysis of Secondary School English as a Foreign Language (EFL) Texts in China

ERIC Educational Resources Information Center

Xiong, Tao

2014-01-01

The school textbooks have been a useful site for inquiry into ways environmentalism is communicated. Rooted in the dominant social value of exploiting nature to satisfy human desire, shallow environmentalism treats environmental and ecological destruction by addressing immediate physical symptoms but refuses to reflect critically on the underlying…

A model for microbially induced precipitation of vadose-zone calcites in fractures at LOS Alamos, New Mexico, USA

NASA Astrophysics Data System (ADS)

Newman, Brent D.; Campbell, Andrew R.; Norman, David I.; Ringelberg, David B.

1997-05-01

Fractures are unique environments that can concentrate the flow of water, nutrients, and contaminants. As such, fractures play an important role in controlling the flux of various substances into and through the vadose zone. Calcite fracture fillings are present in the near surface in the Bandelier Tuff Formation at Los Alamos, New Mexico, and provide a record of the geochemical and hydrologic processes that have occurred in fractures. The objective of this study was to examine calcite fracture fills in order to improve understanding of processes within fractures, and in particular those that lead to precipitation of calcite. Samples of calcite fillings were collected from vertical and horizontal fractures exposed in a shallow waste-burial pit. Scanning electron microscopy show morphologies which suggest that plants, fungi, and bacteria were important in the precipitation process. Quadrupole mass spectrometric analyses of fluid inclusion gases show predominantly methane (17-99%) and little to no oxygen (0-8%), suggesting the development of anaerobic conditions in the fractures. Ester-linked phospholipid biomarkers are evidence for a diverse microbial community in the fractures, and the presence of di-ether lipids indicate that the methane was generated by anaerobic bacteria. The calcite fillings apparently resulted from multiple biological and chemical processes in which plant roots in the fractures were converted to calcite. Roots grew into the fractures, eventually died, and were decomposed by bacteria and fungi. Anaerobic gases were generated from encapsulated organic material within the calcite via microbial decomposition, or were generated by microbes simultaneously with calcite precipitation. It is likely that the biological controls on calcite formation that occurred in the Los Alamos fractures also occurs in soils, and may explain the occurrence of other types of pedogenic calcites.

Effects of application methods of metam sodium and plastic covers on horizontal and vertical distributions of methyl isothiocyanate in bedded field plots.

PubMed

Ou, Li-Tse; Thomas, John E; Allen, L Hartwell; Vu, Joseph C; Dickson, Donald W

2006-08-01

This study was conducted to examine the effects of three application methods of metam sodium (broadcast, single irrigation drip tape delivery, and double irrigation drip tape delivery) and two plastic covers (polyethylene film and virtually impermeable film) on volatilization and on horizontal and vertical distributions of the biologically active product of metam sodium, methyl isothiocyanate (MITC), in field plots in a Florida sandy soil. Volatilization of MITC from field beds lasted for about 20 hours after completion of metam sodium application regardless of application methods. Virtually impermeable film (VIF) was a better barrier to reduce volatilization loss than polyethylene film (PE). Since water was not applied during broadcast application, MITC was mainly retained in the shallow soil layer (0- to 20-cm depth) and downward movement of MITC was limited to about 30 cm. Large values of standard deviation indicated that initial spatial distribution of MITC in the root zone (10- and 20-cm depths) of the two broadcast applied beds covered with PE or VIF was variable. Twice more water was delivered through the single drip tape than through individual tapes of double drip tape treatments during drip application of metam sodium. More water from the single drip tape likely facilitated downward movement of MITC to at least 60-cm depth, but MITC did not penetrate to this depth in the double drip tape beds. On the other hand, horizontal distribution of MITC in the root zone (10- and 20-cm depths) in the double drip tape beds was more uniform than in the single drip tape beds. More MITC was retained in the subsurface of the VIF-covered beds regardless of application methods than in the PE-covered beds.

How Has Human-induced Climate Change Affected California Drought Risk?

NASA Astrophysics Data System (ADS)

Cheng, L.; Hoerling, M. P.; Aghakouchak, A.; Livneh, B.; Quan, X. W.; Eischeid, J. K.

2015-12-01

The current California drought has cast a heavy burden on statewide agriculture and water resources, further exacerbated by concurrent extreme high temperatures. Furthermore, industrial-era global radiative forcing brings into question the role of long-term climate change on CA drought. How has human-induced climate change affected California drought risk? Here, observations and model experimentation are applied to characterize this drought employing metrics that synthesize drought duration, cumulative precipitation deficit, and soil moisture depletion. The model simulations show that increases in radiative forcing since the late 19th Century induces both increased annual precipitation and increased surface temperature over California, consistent with prior model studies and with observed long-term change. As a result, there is no material difference in the frequency of droughts defined using bivariate indicators of precipitation and near-surface (10-cm) soil moisture, because shallow soil moisture responds most sensitively to increased evaporation driven by warming, which compensates the increase in the precipitation. However, when using soil moisture within a deep root zone layer (1-m) as co-variate, droughts become less frequent because deep soil moisture responds most sensitively to increased precipitation. The results illustrate the different land surface responses to anthropogenic forcing that are relevant for near-surface moisture exchange and for root zone moisture availability. The latter is especially relevant for agricultural impacts as the deep layer dictates moisture availability for plants, trees, and many crops. The results thus indicate the net effect of climate change has made agricultural drought less likely, and that the current severe impacts of drought on California's agriculture has not been substantially caused by long-term climate changes.

Assessment of quality and geochemical processes occurring in groundwaters near central air conditioning plant site in Trombay, Maharashtra, India.

PubMed

Tirumalesh, K; Shivanna, K; Sriraman, A K; Tyagi, A K

2010-04-01

This paper summarizes the findings obtained in a monitoring study to understand the sources and processes affecting the quality of shallow and deep groundwater near central air conditioning plant site in Trombay region by making use of physicochemical and biological analyses. All the measured parameters of the groundwaters indicate that the groundwater quality is good and within permissible limits set by (Indian Bureau of Standards 1990). Shallow groundwater is dominantly of Na-HCO(3) type whereas deep groundwater is of Ca-Mg-HCO(3) type. The groundwater chemistry is mainly influenced by dissolution of minerals and base exchange processes. High total dissolved solids in shallow groundwater compared to deeper ones indicate faster circulation of groundwater in deep zone preferably through fissures and fractures whereas groundwater flow is sluggish in shallow zone. The characteristic ionic ratio values and absence of bromide point to the fact that seawater has no influence on groundwater system.

The dark side of the hyporheic zone: Depth profiles of nitrogen and its processing in stream sediments

USGS Publications Warehouse

Stelzer, R.S.; Bartsch, L.A.; Richardson, W.B.; Strauss, E.A.

2011-01-01

1.Although it is well known that sediments can be hot spots for nitrogen transformation in streams, many previous studies have confined measurements of denitrification and nitrate retention to shallow sediments (<5cm deep). We determined the extent of nitrate processing in deeper sediments of a sand plains stream (Emmons Creek) by measuring denitrification in core sections to a depth of 25cm and by assessing vertical nitrate profiles, with peepers and piezometers, to a depth of 70cm. 2.Denitrification rates of sediment slurries based on acetylene block were higher in shallower core sections. However, core sections deeper than 5cm accounted for 68% of the mean depth-integrated denitrification rate. 3.Vertical hydraulic gradient and vertical profiles of pore water chloride concentration suggested that deep ground water upwelled through shallow sediments before discharging to the stream channel. The results of a two-source mixing model based on chloride concentrations suggested that the hyporheic zone was very shallow (<5cm) in Emmons Creek. 4.Vertical profiles showed that nitrate concentration in shallow ground water was about 10-60% of the nitrate concentration of deep ground water. The mean nitrate concentrations of deep and shallow ground water were 2.17 and 0.73mgNO3-NL-1, respectively. 5.Deep ground water tended to be oxic (6.9mgO2L-1) but approached anoxia (0.8mgO2L-1) after passing through shallow, organic carbon-rich sediments, which suggests that the decline in the nitrate concentrations of upwelling ground water was because of denitrification. 6.Collectively, our results suggest that there is substantial nitrate removal occurring in deep sediments, below the hyporheic zone, in Emmons Creek. Our findings suggest that not accounting for nitrate removal in deep sediments could lead to underestimates of nitrogen processing in streams and catchments. ?? 2011 Blackwell Publishing Ltd.

Silurian and Devonian in Vietnam—Stratigraphy and facies

NASA Astrophysics Data System (ADS)

Thanh, Tống Duy; Phương, Tạ Hoàng; Janvier, Philippe; Hùng, Nguyễn Hữu; Cúc, Nguyễn Thị Thu; Dương, Nguyễn Thùy

2013-09-01

Silurian and Devonian deposits in Viet Nam are present in several zones and regions, including Quang Ninh, East Bac Bo, and West Bac Bo Zones of the Bac Bo Region, the Dien Bien-Nghe An and Binh Tri Thien Zones of the Viet-Lao Region, and the South Trung Bo, and Western Nam Bo Zones of the South Viet Nam Region (Fig. 1). The main lithological features and faunal composition of the Silurian and Devonian Units in all these zones are briefly described. The Silurian consists of deep-water deposits of the upper parts of the Co To and Tan Mai Formations in the Quang Ninh Zone, the upper parts of the Phu Ngu Formation in the East Bac Bo Zone and the upper parts of the Long Dai and Song Ca Formations in the Viet-Lao Region. Shallow water facies Silurian units containing benthic faunas are more widely distributed, including the upper part of the Sinh Vinh and Bo Hieng Formations in the West Bac Bo Zone, the Kien An Formation in the Quang Ninh Zone, and, in the Viet-Lao Region, the Dai Giang Formation and the upper part of the Tay Trang Formation. No Lower and Middle Devonian deposits indicate deep water facies, but they are characterized by different shallow water facies. Continental to near shore, deltaic facies characterize the Lower Devonian Song Cau Group in the East Bac Bo Zone, the Van Canh Formation in the Quang Ninh Zone, and the A Choc Formation in the Binh Tri Thien Zone. Similar facies also occur in the Givetian Do Son Formation of the Quang Ninh Zone, and the Tan Lap Formation in the East Bac Bo Zone, and consist of coarse terrigenous deposits—cross-bedded conglomerates, sandstone, etc. Most Devonian units are characterized by shallow marine shelf facies. Carbonate and terrigenous-carbonate facies dominate, and terrigenous facies occur in the Lower and Middle Devonian sections in some areas only. The deep-water-like facies is characteriztic for some Upper Devonian formations in the Bac Bo (Bang Ca and Toc Tat Formations) and Viet-Lao Regions (Thien Nhan and Xom Nha Formations). These formations contain cherty shale or siliceous limestone, and fossils consist of conodonts, but there are also brachiopods and other benthos. They were possibly deposited in a deep water environment on the slope of the continental shelf. Most Devonian units distributed in the North and the Central Viet Nam consist of self shallow water sediments, and apparently they were deposited in a passive marginal marine environment. The coarse clastic continental or subcontinental deposits are distributed only in some areas of the East Bac Bo and of the Quang Ninh zones of the Bac Bo Region, and in the south of the Binh Tri Thien Zone. This situation suggests the influence of the Caledonian movement at the end of the Silurian period that called the Guangxi movement in South China.

Evidence of shallow fault zone strengthening after the 1992 M7.5 Landers, California, earthquake

USGS Publications Warehouse

Li, Y.-G.; Vidale, J.E.; Aki, K.; Xu, Fei; Burdette, T.

1998-01-01

Repeated seismic surveys of the Landers, California, fault zone that ruptured in the magnitude (M) 7.5 earthquake of 1992 reveal an increase in seismic velocity with time. P, S, and fault zone trapped waves were excited by near-surface explosions in two locations in 1994 and 1996, and were recorded on two linear, three-component seismic arrays deployed across the Johnson Valley fault trace. The travel times of P and S waves for identical shot-receiver pairs decreased by 0.5 to 1.5 percent from 1994 to 1996, with the larger changes at stations located within the fault zone. These observations indicate that the shallow Johnson Valley fault is strengthening after the main shock, most likely because of closure of cracks that were opened by the 1992 earthquake. The increase in velocity is consistent with the prevalence of dry over wet cracks and with a reduction in the apparent crack density near the fault zone by approximately 1.0 percent from 1994 to 1996.

Assessing sea-level rise impact on saltwater intrusion into the root zone of a geo-typical area in coastal east-central Florida.

PubMed

Xiao, Han; Wang, Dingbao; Medeiros, Stephen C; Hagen, Scott C; Hall, Carlton R

2018-07-15

Saltwater intrusion (SWI) into root zone in low-lying coastal areas can affect the survival and spatial distribution of various vegetation species by altering plant communities and the wildlife habitats they support. In this study, a baseline model was developed based on FEMWATER to simulate the monthly variation of root zone salinity of a geo-typical area located at the Cape Canaveral Barrier Island Complex (CCBIC) of coastal east-central Florida (USA) in 2010. Based on the developed and calibrated baseline model, three diagnostic FEMWATER models were developed to predict the extent of SWI into root zone by modifying the boundary values representing the rising sea level based on various sea-level rise (SLR) scenarios projected for 2080. The simulation results indicated that the extent of SWI would be insignificant if SLR is either low (23.4cm) or intermediate (59.0cm), but would be significant if SLR is high (119.5cm) in that infiltration/diffusion of overtopping seawater in coastal low-lying areas can greatly increase root zone salinity level, since the sand dunes may fail to prevent the landward migration of seawater because the waves of the rising sea level can reach and pass over the crest under high (119.5cm) SLR scenario. Copyright © 2018 Elsevier B.V. All rights reserved.

Inter-Annual Variability of Soil Moisture Stress Function in the Wheat Field

NASA Astrophysics Data System (ADS)

Akuraju, V. R.; Ryu, D.; George, B.; Ryu, Y.; Dassanayake, K. B.

2014-12-01

Root-zone soil moisture content is a key variable that controls the exchange of water and energy fluxes between land and atmosphere. In the soil-vegetation-atmosphere transfer (SVAT) schemes, the influence of root-zone soil moisture on evapotranspiration (ET) is parameterized by the soil moisture stress function (SSF). Dependence of actual ET: potential ET (fPET) or evaporative fraction to the root-zone soil moisture via SSF can also be used inversely to estimate root-zone soil moisture when fPET is estimated by remotely sensed land surface states. In this work we present fPET versus available soil water (ASW) in the root zone observed in the experimental farm sites in Victoria, Australia in 2012-2013. In the wheat field site, fPET vs ASW exhibited distinct features for different soil depth, net radiation, and crop growth stages. Interestingly, SSF in the wheat field presented contrasting shapes for two cropping years of 2012 and 2013. We argue that different temporal patterns of rainfall (and resulting soil moisture) during the growing seasons in 2012 and 2013 are responsible for the distinctive SSFs. SSF of the wheat field was simulated by the Agricultural Production Systems sIMulator (APSIM). The APSIM was able to reproduce the observed fPET vs. ASW. We discuss implications of our findings for existing modeling and (inverse) remote sensing approaches relying on SSF and alternative growth-stage-dependent SSFs.

Estimation of the Potential for Atrazine Transport in a Silt Loam Soil

USGS Publications Warehouse

Eckhardt, D.A.V.; Wagenet, R.J.

1996-01-01

The transport potential of the herbicide atrazine (2-chloro-4-ethyl-6-isopropyl-s-triazine) through a 1-meter-thick root zone of corn (Zea mays L.) in a silty-loam soil in Kansas was estimated for a 22-year period (1972-93) using the one-dimensional water-flow and solute-transport model LEACHM. Results demonstrate that, for this soil, atrazine transport is directly related to the amount and timing of rain that follows spring applications of atrazine. Two other critical transport factors were important in wet years - [1] variability in atrazine application rate, and [2] atrazine degradation rates below the root zone. Results demonstrate that the coincidence of heavy rain soon after atrazine application can cause herbicide to move below the rooting zone into depths at which biodegradation rates are assumed to be low but are often unknown. Atrazine that reaches below the rooting zone and persists in the underlying soil can subsequently be transported into ground water as soil water drains, typically after the growing season. A frequency analysis of atrazine concentrations in subsurface drainage, combined with field data, demonstrates the relative importance of critical transport factors and confirms a need for definitive estimates of atrazine-degradation rates below the root zone. The analysis indicates that periodic leaching of atrazine can be expected for this soil when rainfall that exceeds 20 cm/mo coincides with atrazine presence in soil.

Influence of Topography on Root Processes in the Shale Hills-Susquehanna Critical Zone Observatory

NASA Astrophysics Data System (ADS)

Eissenstat, D. M.; Orr, A. S.; Adams, T. S.; Chen, W.; Gaines, K.

2015-12-01

Topography can strongly influence root and associated mycorrhizal fungal function in the Critical Zone. In the Shale Hills-Susquehanna Critical Zone Observatory (SSCZO), soil depths range from more than 80 cm deep in the valley floor to about 25 cm on the ridge top. Tree height varies from about 28 m tall at the valley floor to about 17 m tall at the ridge top. Yet total absorptive root length to depth of refusal is quite similar across the hillslope. We find root length density to vary as much at locations only 1-2 m apart as at scales of hundreds of meters across the catchment. Tree community composition also varies along the hillslope, including tree species that vary widely in thickness of their absorptive roots and type of mycorrhiza (arbuscular mycorrhizal and ectomycorrhizal). Studies of trees in a common garden of 16 tree species and in forests near SSCZO indicate that both root morphology and mycorrhizal type can strongly influence root foraging. Species that form thick absorptive roots appear more dependent on mycorrhizal fungi and thin-root species forage more by root proliferation. Ectomycorrhizal trees show more variation in foraging precision (proliferation in a nutrient-rich patch relative to that in an unenriched patch) of their mycorrhizal hyphae whereas AM trees show more variation in foraging precision by root proliferation, indicating alternative strategies among trees of different mycorrhizal types. Collectively, the results provide insight into how topography can influence foraging belowground.

Complex physiological and molecular processes underlying root gravitropism

NASA Technical Reports Server (NTRS)

Chen, Rujin; Guan, Changhui; Boonsirichai, Kanokporn; Masson, Patrick H.

2002-01-01

Gravitropism allows plant organs to guide their growth in relation to the gravity vector. For most roots, this response to gravity allows downward growth into soil where water and nutrients are available for plant growth and development. The primary site for gravity sensing in roots includes the root cap and appears to involve the sedimentation of amyloplasts within the columella cells. This process triggers a signal transduction pathway that promotes both an acidification of the wall around the columella cells, an alkalinization of the columella cytoplasm, and the development of a lateral polarity across the root cap that allows for the establishment of a lateral auxin gradient. This gradient is then transmitted to the elongation zones where it triggers a differential cellular elongation on opposite flanks of the central elongation zone, responsible for part of the gravitropic curvature. Recent findings also suggest the involvement of a secondary site/mechanism of gravity sensing for gravitropism in roots, and the possibility that the early phases of graviresponse, which involve differential elongation on opposite flanks of the distal elongation zone, might be independent of this auxin gradient. This review discusses our current understanding of the molecular and physiological mechanisms underlying these various phases of the gravitropic response in roots.

Deposition of ammonium and nitrate in the roots of maize seedlings supplied with different nitrogen salts.

PubMed

Bloom, Arnold J; Randall, Lesley; Taylor, Alison R; Silk, Wendy K

2012-03-01

This study measured total osmolarity and concentrations of NH(4)(+), NO(3)(-), K(+), soluble carbohydrates, and organic acids in maize seminal roots as a function of distance from the apex, and NH(4)(+) and NO(3)(-) in xylem sap for plants receiving NH(4)(+) or NO(3)(-) as a sole N-source, NH(4)(+) plus NO(3)(-), or no nitrogen at all. The disparity between net deposition rates and net exogenous influx of NH(4)(+) indicated that growing cells imported NH(4)(+) from more mature tissue, whereas more mature root tissues assimilated or translocated a portion of the NH(4)(+) absorbed. Net root NO(3)(-) influx under Ca(NO(3))(2) nutrition was adequate to account for pools found in the growth zone and provided twice as much as was deposited locally throughout the non-growing tissue. In contrast, net root NO(3)(-) influx under NH(4)NO(3) was less than the local deposition rate in the growth zone, indicating that additional NO(3)(-) was imported or metabolically produced. The profile of NO(3)(-) deposition rate in the growth zone, however, was similar for the plants receiving Ca(NO(3))(2) or NH(4)NO(3). These results suggest that NO(3)(-) may serve a major role as an osmoticant for supporting root elongation in the basal part of the growth zone and maintaining root function in the young mature tissues.

Deposition of ammonium and nitrate in the roots of maize seedlings supplied with different nitrogen salts

PubMed Central

Bloom, Arnold J.; Randall, Lesley; Taylor, Alison R.; Silk, Wendy K.

2012-01-01

This study measured total osmolarity and concentrations of NH4+, NO3–, K+, soluble carbohydrates, and organic acids in maize seminal roots as a function of distance from the apex, and NH4+ and NO3– in xylem sap for plants receiving NH4+ or NO3– as a sole N-source, NH4+ plus NO3–, or no nitrogen at all. The disparity between net deposition rates and net exogenous influx of NH4+ indicated that growing cells imported NH4+ from more mature tissue, whereas more mature root tissues assimilated or translocated a portion of the NH4+ absorbed. Net root NO3– influx under Ca(NO3)2 nutrition was adequate to account for pools found in the growth zone and provided twice as much as was deposited locally throughout the non-growing tissue. In contrast, net root NO3– influx under NH4NO3 was less than the local deposition rate in the growth zone, indicating that additional NO3– was imported or metabolically produced. The profile of NO3– deposition rate in the growth zone, however, was similar for the plants receiving Ca(NO3)2 or NH4NO3. These results suggest that NO3– may serve a major role as an osmoticant for supporting root elongation in the basal part of the growth zone and maintaining root function in the young mature tissues. PMID:22213811

Process-based modeling of temperature and water profiles in the seedling recruitment zone: Part II. Seedling emergence timing

USDA-ARS?s Scientific Manuscript database

Predictions of seedling emergence timing for spring wheat are facilitated by process-based modeling of the microsite environment in the shallow seedling recruitment zone. Hourly temperature and water profiles within the recruitment zone for 60 days after planting were simulated from the process-base...

Identification of runoff formation with two dyes in a mid-latitude mountain headwater

NASA Astrophysics Data System (ADS)

Vlcek, Lukas; Schneider, Philipp; Falatkova, Kristyna

2017-04-01

There have been numerous studies on subsurface flow in peat bog areas, as both water scarcity and floods have led to increased attention to this specific environment and its role within the hydrological cycle. In contrast, this experimental study identifies runoff formation at two opposite hillslopes in a peaty mountain headwater; a slope with organic soils (Peat / Histosol) and shallow groundwater ( 0.5 m below surface) complemented by a slope with mineral soils (Podzol) and no detectable groundwater within 2 m below surface. Differences in infiltration, percolation, and preferential flowpaths between both hillslopes could be identified by sprinkling experiments with two dyes - Brilliant Blue FCF and Fluorescein. By excavating dye-stained soil profiles parallel ("lateral") and perpendicular ("frontal") to the slopes' gradients - both within and downstream of the sprinkling plots - dye stained flow patterns in the soil could be clearly identified. The results show that biomat flow occurred at both hillslopes. The dye solutions infiltrated into the soil and continued either as lateral subsurface pipeflow (SSF), in the case of the Peat Bog, or percolated vertically towards the bedrock in the case of the Podzol. The study provides evidence that biomat flow (BMF) - shallow, lateral preferential flowpaths along decomposed tree roots or logs - is a major runoff formation process at the Peat Bog hillslope and in the adjacent riparian zone. This lateral flow through the organic soil hillslope (Peat Bog) towards the stream occurred mainly as shallow subsurface flow in organic layers above the groundwater level (BMF and SSF), but water partly percolates to the shallow groundwater via vertical macropores as well . In contrast, the mineral soil hillslope (Podzol) was mostly dominated by vertical percolation. Lateral flow occurred only on short distances in the organic topsoil as biomat flow (BMF). The sorptive tracer Brilliant Blue FCF successfully stained flowpaths in the soil at both hillslopes, whereas the identification of soil staining patterns by the relatively conservative tracer Fluorescein was limited on organic soil profiles.

Mycorrhizal colonization across hydrologic gradients in restored and reference freshwater wetlands

USGS Publications Warehouse

Bauer, C.R.; Kellogg, C.H.; Bridgham, S.D.; Lamberti, G.A.

2003-01-01

Arbuscular mycorrhizae, which are plant root-fungal symbioses, are common associates of vascular plants. Such relationships, however, are thought to be rare in wetland plant roots, although several recent studies suggest that arbuscular mycorrhizae may be important in wetland ecosystems. Our objectives were to determine (1) the level of arbuscular mycorrhizal colonization of plant roots in three freshwater marshes and (2) the effect of restoration status, hydrologic zone, and plant species identity on mycorrhizal colonization. We quantified the percentage of plant roots colonized by mycorrhizal fungi in one reference and two restored freshwater marshes in northern Indiana, USA during summer 1999. Roots were collected from soil cores taken around dominant plant species present in each of three hydrologic zones and then stained for microscopic examination of mycorrhizal colonization. Mycorrhizae were present in each wetland, in all hydrologic zones and in all sampled plants, including Carex and Scirpus species previously thought to be non-mycorrhizal. Both restored and reference wetlands had moderate levels of mycorrhizal colonization, but no clear trends in colonization were seen with hydrologic zone, which has been hypothesized to regulate the formation of mycorrhizae in wetlands. Mycorrhizal colonization levels in the roots of individual species ranged from 3 to 90% and were particularly large in members of the Poaceae (grass) family. Our results suggest that arbuscular mycorrhizae may be widely distributed across plant species and hydrologic zones in both restored and reference freshwater marshes. Thus, future research should examine the functional role of mycorrhizal fungi in freshwater wetlands. ?? 2003, The Society of Wetland Scientists.

Comparative effects of auxin and abscisic acid on growth, hydrogen ion efflux and gravitropism in primary roots of maize

NASA Technical Reports Server (NTRS)

Evans, M. L.; Mulkey, T. J.

1984-01-01

In order to test the idea that auxin action on root growth may be mediated by H(+) movement, the correlation of auxin action on growth and H(+) movement in roots was examined along with changes in H(+) efflux patterns associated with the asymmetric growth which occurs during gravitropism. The effects of indoleacetic acid (IAA) and abscisic acid (AbA) on growth, H(+) secretion, and gravitropism in roots were compared. Results show a close correlation existent between H(+) efflux and growth in maize roots. In intact roots there is strong H(+) efflux from the elongation zone. Growth-promoting concentrations of IAA stimulate H(+) efflux. During gravitropism the H(+) efflux from the elongation zone becomes asymmetric; the evidence indicates that auxin redistribution contributes to the development of acid efflux asymmetry. That AbA stimulates root growth is reflected in its ability to stimulate H(+) efflux from apical root segments.

Corn stover harvest increases herbicide movement to subsurface drains – Root Zone Water Quality Model simulations

USDA-ARS?s Scientific Manuscript database

BACKGROUND: Removal of crop residues for bioenergy production can alter soil hydrologic properties, but there is little information on its impact on transport of herbicides and their degradation products to subsurface drains. The Root Zone Water Quality Model, previously calibrated using measured fl...

Benchmarking LSM root-zone soil mositure predictions using satellite-based vegetation indices

USDA-ARS?s Scientific Manuscript database

The application of modern land surface models (LSMs) to agricultural drought monitoring is based on the premise that anomalies in LSM root-zone soil moisture estimates can accurately anticipate the subsequent impact of drought on vegetation productivity and health. In addition, the water and energy ...

Fate and origin of 1,2-dichloropropane in an unconfined shallow aquifer

USGS Publications Warehouse

Tesoriero, A.J.; Loffler, F.E.; Liebscher, H.

2001-01-01

A shallow aquifer with different redox zones overlain by intensive agricultural activity was monitored for the occurrence of 1,2-dichloropropane (DCP) to assess the fate and origin of this pollutant. DCP was detected more frequently in groundwater samples collected in aerobic and nitrate-reducing zones than those collected from iron-reducing zones. Simulated DCP concentrations for groundwater entering an iron-reducing zone were calculated from a fate and transport model that included dispersion, sorption, and hydrolysis but not degradation. Simulated concentrations were well in excess of measured values, suggesting that microbial degradation occurred in the iron-reducing zone. Microcosm experiments were conducted using aquifer samples collected from iron-reducing and aerobic zones to evaluate the potential for microbial degradation of DCP and to explain field observations. Hydrogenolysis of DCP and production of monochlorinated propanes in microcosm experiments occurred only with aquifer materials collected from the iron-reducing zone, and no dechlorination was observed in microcosms established with aquifer materials collected from the aerobic zones. Careful analyses of the DCP/1,2,2-trichloropropane ratios in groundwater indicated that older fumigant formulations were responsible for the high levels of DCP present in this aquifer.A shallow aquifer with different redox zones overlain by intensive agricultural activity was monitored for the occurrence of 1,2-dichloropropane (DCP) to assess the fate and origin of this pollutant. DCP was detected more frequently in groundwater samples collected in aerobic and nitrate-reducing zones than those collected from iron-reducing zones. Simulated DCP concentrations for groundwater entering an iron-reducing zone were calculated from a fate and transport model that included dispersion, sorption, and hydrolysis but not degradation. Simulated concentrations were well in excess of measured values, suggesting that microbial degradation occurred in the iron-reducing zone. Microcosm experiments were conducted using aquifer samples collected from iron-reducing and aerobic zones to evaluate the potential for microbial degradation of DCP and to explain field observations. Hydrogenolysis of DCP and production of monochlorinated propanes in microcosm experiments occurred only with aquifer materials collected from the iron-reducing zone, and no dechlorination was observed in microcosms established with aquifer materials collected from the aerobic zones. Careful analyses of the DCP/1,2,2-trichloropropane ratios in groundwater indicated that older fumigant formulations were responsible for the high levels of DCP present in this aquifer.

Specialized zones of development in roots

NASA Technical Reports Server (NTRS)

Ishikawa, H.; Evans, M. L.

1995-01-01

The authors propose using the term "distal elongation zone" (DEZ) rather than "postmitotic isodiametric growth zone" to refer to the group of cells between the apical meristem and the elongation zone in plant roots. Reasons presented for the change are that the proposed DEZ includes many cells that are still dividing, most cells in the region are not isodiametric, and the pattern of cell expansion in this region varies with position in the region. Cells in the DEZ respond to gravistimulation, mechanical impedance, electrotropic stimulation, water stress, and auxin. Differences in gene expression patterns between DEZ cells and cells in the main elongation zone are noted.

The Regulation of Growth in the Distal Elongation Zone of Maize Roots

NASA Technical Reports Server (NTRS)

Evans, Michael L.

1998-01-01

The major goals of the proposed research were 1. To develop specialized software for automated whole surface root expansion analysis and to develop technology for controlled placement of surface electrodes for analysis of relationships between root growth and root pH and electrophysiological properties. 2. To measure surface pH patterns and determine the possible role of proton flux in gravitropic sensing or response, and 3. To determine the role of auxin transport in establishment of patterns of proton flux and electrical gradients during the gravitropic response of roots with special emphasis on the role of the distal elongation zone in the early phases of the gravitropic response.

[Ichthyofauna associated to a shallow reef in Morrocoy National Park, Venezuela].

PubMed

López-Ordaz, A; Rodríguez-Quintal, J G

2010-10-01

Ichthyofauna associated to a shallow reef in Morrocoy National Park, Venezuela. Morrocoy National Park is one of the most studied coastal marine environments in Venezuela; however, efforts have been concentrated in south zone. In this study we select a shallow reef located in the north zone, characterized the benthic community and the structure of the fish community was studied using visual censuses. The benthic community was dominated by dead coral covered by algae (31%) and the live coral coverage was 12%. A total of 65 fish species belonging to 24 families were recorded, being Pomacentridae (43%), Scaridae (19%) and Haemulidae (15%) the most abundant families. Significant differences in the fish species abundances were found along the depth gradient, which could be related to the habitat characteristics, nevertheless herbivorous species dominance was evident at all depth strata. There seems to be a trend towards greater richness and density in the south zone reefs, and these differences may be related to the presence of extensive seagrass meadows and mangrove forests in that area or to differences in the recruitment patterns.

Radon concentration distributions in shallow and deep groundwater around the Tachikawa fault zone.

PubMed

Tsunomori, Fumiaki; Shimodate, Tomoya; Ide, Tomoki; Tanaka, Hidemi

2017-06-01

Groundwater radon concentrations around the Tachikawa fault zone were surveyed. The radon concentrations in shallow groundwater samples around the Tachikawa fault segment are comparable to previous studies. The characteristics of the radon concentrations on both sides of the segment are considered to have changed in response to the decrease in groundwater recharge caused by urbanization on the eastern side of the segment. The radon concentrations in deep groundwater samples collected around the Naguri and the Tachikawa fault segments are the same as those of shallow groundwater samples. However, the radon concentrations in deep groundwater samples collected from the bedrock beside the Naguri and Tachikawa fault segments are markedly higher than the radon concentrations expected from the geology on the Kanto plane. This disparity can be explained by the development of fracture zones spreading on both sides of the two segments. The radon concentration distribution for deep groundwater samples from the Naguri and the Tachikawa fault segments suggests that a fault exists even at the southern part of the Tachikawa fault line. Copyright © 2017 Elsevier Ltd. All rights reserved.

An Evaluation of Proposed Mechanisms of Slab Flattening in Central Mexico

NASA Astrophysics Data System (ADS)

Skinner, Steven M.; Clayton, Robert W.

2011-08-01

Central Mexico is the site of an enigmatic zone of flat subduction. The general geometry of the subducting slab has been known for some time and is characterized by a horizontal zone bounded on either side by two moderately dipping sections. We systematically evaluate proposed hypotheses for shallow subduction in Mexico based on the spatial and temporal evidence, and we find no simple or obvious explanation for the shallow subduction in Mexico. We are unable to locate an oceanic lithosphere impactor, or the conjugate of an impactor, that is most often called upon to explain shallow subduction zones as in South America, Japan, and Laramide deformation in the US. The only bathymetric feature that is of the right age and in the correct position on the conjugate plate is a set of unnamed seamounts that are too small to have a significant effect on the buoyancy of the slab. The only candidate that we cannot dismiss is a change in the dynamics of subduction through a change in wedge viscosity, possibly caused by water brought in by the slab.

On the methane paradox: Transport from shallow water zones rather than in situ methanogenesis is the major source of CH4 in the open surface water of lakes

NASA Astrophysics Data System (ADS)

Encinas Fernández, Jorge; Peeters, Frank; Hofmann, Hilmar

2016-10-01

Estimates of global methane (CH4) emissions from lakes and the contributions of different pathways are currently under debate. In situ methanogenesis linked to algae growth was recently suggested to be the major source of CH4 fluxes from aquatic systems. However, based on our very large data set on CH4 distributions within lakes, we demonstrate here that methane-enriched water from shallow water zones is the most likely source of the basin-wide mean CH4 concentrations in the surface water of lakes. Consistently, the mean surface CH4 concentrations are significantly correlated with the ratio between the surface area of the shallow water zone and the entire lake, fA,s/t, but not with the total surface area. The categorization of CH4 fluxes according to fA,s/t may therefore improve global estimates of CH4 emissions from lakes. Furthermore, CH4 concentrations increase substantially with water temperature, indicating that seasonally resolved data are required to accurately estimate annual CH4 emissions.

Origin of dolomite in Miocene Monterey Shale and related formations in the Temblor Range, California

USGS Publications Warehouse

Friedman, I.; Murata, K.J.

1979-01-01

Dolomites in thick sections of Miocene Monterey Shale and related formations in the Temblor Range of California acquired their isotopic compositions as they formed at shallow depth in the original sediment rich in organic matter, and retained the composition against the vicissitudes of burial diagenesis. The oxygen isotopes of dolomites of successive beds record changes in temperature of bottom water while the carbon isotopes of the same samples indicate changes in the kind of microbial activity (sulfate reduction vs carbohydrate fermentation) that prevailed at shallow depths in the sediment. In an auxiliary study, two samples of dolomite from sediments of Cariaco Basin off Venezuela (DSDP site 147) were found to have ??5C13 of -14.1 and -9.8 per ml PDB, although they occur in a heavy-carbon zone containing bicarbonate as heavy as +8.4 per ml. These dolomites probably originated at shallow depth in the light-carbon zone of microbial sulfate reducers and were buried under later sediments down into the heavy-carbon zone of microbial fermenters of carbohydrates without losing their original light-carbon composition. ?? 1979.

Processes of multibathyal aragonite undersaturation in the Arctic Ocean

USGS Publications Warehouse

Wynn, J.G.; Robbins, L.L.; Anderson, L.G.

2016-01-01

During 3 years of study (2010–2012), the western Arctic Ocean was found to have unique aragonite saturation profiles with up to three distinct aragonite undersaturation zones. This complexity is produced as inflow of Atlantic-derived and Pacific-derived water masses mix with Arctic-derived waters, which are further modified by physiochemical and biological processes. The shallowest aragonite undersaturation zone, from the surface to ∼30 m depth is characterized by relatively low alkalinity and other dissolved ions. Besides local influence of biological processes on aragonite undersaturation of shallow coastal waters, the nature of this zone is consistent with dilution by sea-ice melt and invasion of anthropogenic CO2 from the atmosphere. A second undersaturated zone at ∼90–220 m depth (salinity ∼31.8–35.4) occurs within the Arctic Halocline and is characterized by elevated pCO2 and nutrients. The nature of this horizon is consistent with remineralization of organic matter on shallow continental shelves bordering the Canada Basin and the input of the nutrients and CO2 entrained by currents from the Pacific Inlet. Finally, the deepest aragonite undersaturation zone is at greater than 2000 m depth and is controlled by similar processes as deep aragonite saturation horizons in the Atlantic and Pacific Oceans. The comparatively shallow depth of this deepest aragonite saturation horizon in the Arctic is maintained by relatively low temperatures, and stable chemical composition. Understanding the mechanisms controlling the distribution of these aragonite undersaturation zones, and the time scales over which they operate will be crucial to refine predictive models.

The composite water and solute transport of barley (Hordeum vulgare) roots: effect of suberized barriers.

PubMed

Ranathunge, Kosala; Kim, Yangmin X; Wassmann, Friedrich; Kreszies, Tino; Zeisler, Viktoria; Schreiber, Lukas

2017-03-01

Roots have complex anatomical structures, and certain localized cell layers develop suberized apoplastic barriers. The size and tightness of these barriers depend on the growth conditions and on the age of the root. Such complex anatomical structures result in a composite water and solute transport in roots. Development of apoplastic barriers along barley seminal roots was detected using various staining methods, and the suberin amounts in the apical and basal zones were analysed using gas chromatography-mass spectometry (GC-MS). The hydraulic conductivity of roots ( Lp r ) and of cortical cells ( Lp c ) was measured using root and cell pressure probes. When grown in hydroponics, barley roots did not form an exodermis, even at their basal zones. However, they developed an endodermis. Endodermal Casparian bands first appeared as 'dots' as early as at 20 mm from the apex, whereas a patchy suberin lamellae appeared at 60 mm. The endodermal suberin accounted for the total suberin of the roots. The absolute amount in the basal zone was significantly higher than in the apical zone, which was inversely proportional to the Lp r . Comparison of Lp r and Lp c suggested that cell to cell pathways dominate for water transport in roots. However, the calculation of Lp r from Lp c showed that at least 26 % of water transport occurs through the apoplast. Roots had different solute permeabilities ( P sr ) and reflection coefficients ( σ sr ) for the solutes used. The σ sr was below unity for the solutes, which have virtually zero permeability for semi-permeable membranes. Suberized endodermis significantly reduces Lp r of seminal roots. The water and solute transport across barley roots is composite in nature and they do not behave like ideal osmometers. The composite transport model should be extended by adding components arranged in series (cortex, endodermis) in addition to the currently included components arranged in parallel (apoplastic, cell to cell pathways). © The Author 2017. Published by Oxford University Press on behalf of the Annals of Botany Company.

Imaging inhomogeneous seismic velocity structure in and around the fault plane of the 2008 Iwate-Miyagi, Japan, Nairiku Earthquake (M7.2) - spatial variation in depth of seismic-aseismic transition and possible high-T/overpressurized fluid distribution

NASA Astrophysics Data System (ADS)

Okada, T.; Umino, N.; Hasegawa, A.; 2008 Iwate-Miyagi Nairiku Earthquake, G. O.

2008-12-01

A large shallow earthquake (named the 2008 Iwate-Miyagi Nairiku Earthquake) with a JMA magnitude of 7.2 occurred in the central part of NE Japan on June 14, 2008. Focal area of the present earthquake is located in the Tohoku backbone range strain concentration zone (Miura et al., 2004) along the volcanic front. Just after the occurrence of this earthquake, Japanese universities (Hokkaido, Hirosaki, Tohoku, Tokyo, Nagoya, Kyoto, Kochi, Kyusyu, Kagoshima) and NIED deployed a dense aftershock observation network in and around the focal area. Total number of temporal stations is 128. Using data from this dense aftershock observation and other temporary and routinely operated stations, we estimate hypocenter distribution and seismic velocity structure of the crust in and around the focal area of the present earthquake. We determined three-dimensional seismic velocity structure and relocated hypocenters simultaneously using the double- difference tomography method (Zhang and Thurber, 2003). Spatial extent of the aftershock area is about 45 km (NNE-SSW) by 15 km (WNW-ESE). Most of aftershocks are aligned in westward dipping. Shallower extensions of aftershock alignments seem to be located nearly at the coseismic surface deformations, which are along a geological fault, and the surface trace of the active fault (Detana fault). Note that some aftershocks seem to occur off the fault plane of the mainshock. The focal area of the present earthquake is located at a high Vs area. In the lower crust, we found some distinct low-Vs areas. These low velocity zones are located just beneath the strain concentration zones / seismic belts along the backbone range and in the northern Miyagi region. Focal area of the present earthquake is also located just above the low velocity zone in the lower crust. Beneath active volcanoes, these low velocity zones become more distinct and shallower, and aftershocks tend to occur shallower and not occur within such low-velocity zones. These low-velocity zones in the lower crust might be caused by high temperature upwelling flow of fluid originating from the mantle wedge. The present observation supports the hypothesis by Hasegawa et al. (2005) that anelastic deformation of the crust weakened by fluid forms the strain concentration zone and promotes the occurrence of large shallow inland earthquakes. We used data from JMA, Hi-net/NIED, NAO-Mizusawa and TITECH. We also used data from JNES. This work was conducted under the support of Grant-in-Aid for Special Purposes, MEXT, Japan. We thank Prof. Cliff Thurber and Dr. Haijiang Zhang for providing their programs and valuable discussions.

Below-ground attributes on reclaimed surface minelands over a 40-year chronosequence

NASA Astrophysics Data System (ADS)

Limb, Ryan; Bohrer, Stefanie; Volk, Jay

2017-04-01

Reclamation following mining activities often aims to restore stable soils that support productive and diverse native plant communities. The soil re-spread process increases soil compaction, which may alter soil water, plant composition, rooting depths and soil organic matter. This may have a direct impact on vegetation establishment and species recruitment. Seasonal wet/dry and freeze/thaw patterns are thought to alleviate soil compaction over time. However, this has not been formally evaluated on reclaimed landscapes at large scales. Our objectives were to (1) determine soil compaction alleviation, (2) rooting depth and (3) spatial patterns of soil water content over a time-since-reclamation gradient. Soil resistance to penetration varied by depth, with shallow compaction remaining unchanged, but deeper compaction increased over time rather than being alleviated. Root biomass and depth did not increase with time and was consistently less than reference locations. Plant communities initially had a strong native component, but quickly became dominated by invasive species following reclamation and soil water content became increasingly homogeneous over the 40-year chronosequence. Seasonal weather patterns and soil organic matter additions can reduce soil compaction if water infiltration is not limited. Shallow and strongly fibrous-rooted grasses present in reclaimed sites added organic matter to shallow soil layers, but did not penetrate the compacted layers and allow water infiltration. Strong linkages between land management strategies, soil properties and vegetation composition can advance reclamation efforts and promote heterogeneous landscapes. However, current post-reclamation management strategies are not facilitating natural seasonal weather patterns to reducing soil compaction.

Native root xylem embolism and stomatal closure in stands of Douglas-fir and ponderosa pine: mitigation by hydraulic redistribution.

PubMed

Domec, J-C; Warren, J M; Meinzer, F C; Brooks, J R; Coulombe, R

2004-09-01

Hydraulic redistribution (HR), the passive movement of water via roots from moist to drier portions of the soil, occurs in many ecosystems, influencing both plant and ecosystem-water use. We examined the effects of HR on root hydraulic functioning during drought in young and old-growth Douglas-fir [ Pseudotsuga menziesii (Mirb.) Franco] and ponderosa pine ( Pinus ponderosa Dougl. Ex Laws) trees growing in four sites. During the 2002 growing season, in situ xylem embolism, water deficit and xylem vulnerability to embolism were measured on medium roots (2-4-mm diameter) collected at 20-30 cm depth. Soil water content and water potentials were monitored concurrently to determine the extent of HR. Additionally, the water potential and stomatal conductance ( g(s)) of upper canopy leaves were measured throughout the growing season. In the site with young Douglas-fir trees, root embolism increased from 20 to 55 percent loss of conductivity (PLC) as the dry season progressed. In young ponderosa pine, root embolism increased from 45 to 75 PLC. In contrast, roots of old-growth Douglas-fir and ponderosa pine trees never experienced more than 30 and 40 PLC, respectively. HR kept soil water potential at 20-30 cm depth above -0.5 MPa in the old-growth Douglas-fir site and -1.8 MPa in the old-growth ponderosa pine site, which significantly reduced loss of shallow root function. In the young ponderosa pine stand, where little HR occurred, the water potential in the upper soil layers fell to about -2.8 MPa, which severely impaired root functioning and limited recovery when the fall rains returned. In both species, daily maximum g(s) decreased linearly with increasing root PLC, suggesting that root xylem embolism acted in concert with stomata to limit water loss, thereby maintaining minimum leaf water potential above critical values. HR appears to be an important mechanism for maintaining shallow root function during drought and preventing total stomatal closure.

Links Between Earthquake Characteristics and Subducting Plate Heterogeneity in the 2016 Pedernales Ecuador Earthquake Rupture Zone

NASA Astrophysics Data System (ADS)

Bai, L.; Mori, J. J.

2016-12-01

The collision between the Indian and Eurasian plates formed the Himalayas, the largest orogenic belt on the Earth. The entire region accommodates shallow earthquakes, while intermediate-depth earthquakes are concentrated at the eastern and western Himalayan syntaxis. Here we investigate the focal depths, fault plane solutions, and source rupture process for three earthquake sequences, which are located at the western, central and eastern regions of the Himalayan orogenic belt. The Pamir-Hindu Kush region is located at the western Himalayan syntaxis and is characterized by extreme shortening of the upper crust and strong interaction of various layers of the lithosphere. Many shallow earthquakes occur on the Main Pamir Thrust at focal depths shallower than 20 km, while intermediate-deep earthquakes are mostly located below 75 km. Large intermediate-depth earthquakes occur frequently at the western Himalayan syntaxis about every 10 years on average. The 2015 Nepal earthquake is located in the central Himalayas. It is a typical megathrust earthquake that occurred on the shallow portion of the Main Himalayan Thrust (MHT). Many of the aftershocks are located above the MHT and illuminate faulting structures in the hanging wall with dip angles that are steeper than the MHT. These observations provide new constraints on the collision and uplift processes for the Himalaya orogenic belt. The Indo-Burma region is located south of the eastern Himalayan syntaxis, where the strike of the plate boundary suddenly changes from nearly east-west at the Himalayas to nearly north-south at the Burma Arc. The Burma arc subduction zone is a typical oblique plate convergence zone. The eastern boundary is the north-south striking dextral Sagaing fault, which hosts many shallow earthquakes with focal depth less than 25 km. In contrast, intermediate-depth earthquakes along the subduction zone reflect east-west trending reverse faulting.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nugraha, Andri Dian, E-mail: andridn104@gmail.com; Widiyantoro, Sri; Shiddiqi, Hasbi Ash

Indonesian archipelago region is located in active tectonic setting and high seismicity zone. During the last decade, Indonesian was experienced with destructive major earthquakes causing damage and victims. The information of precise earthquake location parameters are very important in partular for earthquake early warning to the society and for advance seismic studies. In this study, we attempted to improve hypocenter location compiled by BMKG for time periods of April, 2009 up to June, 2014 for about 22,000 earthquake events around Indonesian region. For the firts time, we applied teleseismic double-difference relocation algorithm (teletomoDD) to improve hypocenter region in Indonesia regionmore » combining regional and teleseismic stations. Hypocenter relocation was performed utilizing local, regional, and teleseismic P-wave arrival time data. Our relocation result show that travel-time RMS errors were greatly reduced compared to the BMKG catalog. Seismicity at shallower depth (less than 50 km) shows significantly improvement especially in depth, and refined shallow geological structures, e.g. trench and major strike slip faults. Clustered seismicity is also detected beneath volcanic region, and probably related volcano activities and also major faults nearby. In the Sunda arc region, seismicity at shallower depth centered at two major distributions parallel to the trench strike direction, i.e. around fore-arc and in mainland that related to major fault, e.g. the Sumatran fault, and volcanic fronts. Below Central Java region, relocated hypocenter result showed double seismic zone pattern. A seismic gap is detected around the Sunda-Banda transition zone where transition between oceanic subduction to continental crust collision of Australian plate occurs. In Eastern Indonesia region, shallow earthquakes are observed related to major strike slip faults, e.g. Sorong and Palu-Koro fault, volcanism, and shallow part of subduction and collision zones. We also compare our result in the Sunda Arc region with slab1.0 model and our relocated seismicity shows good agreement with the previous slab geometry. Horizontal position shift of relocated events are mostly perpendicular to the trench directions.« less

Growth and development of the root apical meristem.

PubMed

Perilli, Serena; Di Mambro, Riccardo; Sabatini, Sabrina

2012-02-01

A key question in plant developmental biology is how cell division and cell differentiation are balanced to modulate organ growth and shape organ size. In recent years, several advances have been made in understanding how this balance is achieved during root development. In the Arabidopsis root meristem, stem cells in the apical region of the meristem self-renew and produce daughter cells that differentiate in the distal meristem transition zone. Several factors have been implicated in controlling the different functional zones of the root meristem to modulate root growth; among these, plant hormones have been shown to play a main role. In this review, we summarize recent findings regarding the role of hormone signaling and transcriptional networks in regulating root development. Copyright © 2011 Elsevier Ltd. All rights reserved.

Crustal deformation of the Andean foreland at 31° 30‧S (Argentina) constrained by magnetotelluric survey

NASA Astrophysics Data System (ADS)

Orozco, Luz Amparo; Favetto, Alicia; Pomposiello, Cristina; Rossello, Eduardo; Booker, John

2013-01-01

Twenty-five new long-period magnetotelluric sites near 31.5°S were collected in a west-east profile. This profile and the previous one, aligned with and adjacent to the eastern end, have been merged to form a single profile of more than 700 km long, extending from the Precordillera to the Chaco-Pampean Plain. The geotectonic scenario is characterized by a modern flat subduction zone of the Nazca plate located at a depth of around 120 km and clearly defined by the distribution of earthquake hypocenters recorded by local and regional networks. A "bulge" shape at 68.5°W, with an anomalous dip to the west, is observed within this segment. The smooth slab deformation might result from the restriction on eastward motion due to the presence of an electrically resistive zone. The magnetotelluric model shows that this thick zone of increased resistivity is found from shallow crustal levels to upper mantle depths. The bulge geometry allows hot fluids and volatiles to rise from the deeper asthenospheric wedge, and reach the lower crust reducing its viscosity and letting it flow. The zones of low resistivity in the lower crust show spatial correlation with the areas of foreland deformation from Precordillera to the Sierras Pampeanas and may also suggest a ductile regime. Shear zones reactivated by Cenozoic faulting must necessarily have their roots in the levels of the ductile lower crust associated to conductive channels. The zone where the lower crust is closer to the surface coincides with the areas of greatest structural relief and erosion. The interface between the folded ductile lower crust and the brittle upper crust might act as the main level of décollement of the bordering structures between the Precordillera, Sierra de Pie de Palo and the Sierras Pampeanas. In addition, the geometry of the interface might be conditioning the vergence of those structures.

Soil-water content characterisation in a modified Jarvis-Stewart model: A case study of a conifer forest on a shallow unconfined aquifer

NASA Astrophysics Data System (ADS)

Guyot, Adrien; Fan, Junliang; Oestergaard, Kasper T.; Whitley, Rhys; Gibbes, Badin; Arsac, Margaux; Lockington, David A.

2017-01-01

Groundwater-vegetation-atmosphere fluxes were monitored for a subtropical coastal conifer forest in South-East Queensland, Australia. Observations were used to quantify seasonal changes in transpiration rates with respect to temporal fluctuations of the local water table depth. The applicability of a Modified Jarvis-Stewart transpiration model (MJS), which requires soil-water content data, was assessed for this system. The influence of single depth values compared to use of vertically averaged soil-water content data on MJS-modelled transpiration was assessed over both a wet and a dry season, where the water table depth varied from the surface to a depth of 1.4 m below the surface. Data for tree transpiration rates relative to water table depth showed that trees transpire when the water table was above a threshold depth of 0.8 m below the ground surface (water availability is non-limiting). When the water table reached the ground surface (i.e., surface flooding) transpiration was found to be limited. When the water table is below this threshold depth, a linear relationship between water table depth and the transpiration rate was observed. MJS modelling results show that the influence of different choices for soil-water content on transpiration predictions was insignificant in the wet season. However, during the dry season, inclusion of deeper soil-water content data improved the model performance (except for days after isolated rainfall events, here a shallower soil-water representation was better). This study demonstrated that, to improve MJS simulation results, appropriate selection of soil water measurement depths based on the dynamic behaviour of soil water profiles through the root zone was required in a shallow unconfined aquifer system.

[Antimicrobial effect of a new bio-ceramic material iRoot FM on Porphyromonas endodontalis].

PubMed

Bi, Jing; Liu, Yao; Chen, Xu

2017-10-01

To compare the antimicrobial effect of a new bio-ceramic material iRoot FM with traditional intracanal medicaments including calcium hydroxide [Ca(OH) 2 ] and triple antibiotic paste (TAP), on Porphyromonas endodontalis (P. endodontalis), and to evaluate the antimicrobial activity of iRoot FM, providing reference for clinical use of intracanal medicaments. P. endodontalis ATCC 35406 were used in this study. The study was divided into 3 experimental groups including iRoot FM, Ca(OH) 2 and TAP group. Sterile water was used as blank control. Frozen P. endodontalis were seeded and grown overnight in the liquid medium, then P. endodontalis were seeded on BHI-blood agar plates. After the plates were dried, the materials were filled on the plates which were made by a punching machine. Zones of inhibition (mm) were measured after 72 h of anaerobic incubation at 37degrees centigrade. The experimental data were analyzed statistically using SPSS 17.0 software package. The zones of inhibition in the 3 experimental groups: iRoot FM, Ca(OH) 2 and TAP group were (20.74±4.35)mm, (24.89±3.84)mm and (34.51±1.20)mm, respectively. The zones of inhibition of the iRoot FM group and Ca(OH) 2 group were significantly smaller compared with the TAP group (P<0.05), while there was no significant difference between the iRoot FM group and Ca(OH)2 groups (P>0.05). There were no zone of inhibition in the control group. As a new bio-ceramic material, iRoot FM shows a good antimicrobial activity against P. endodontalis and may be a promising intracanal material.

Hunting for shallow slow-slip events at Cascadia

NASA Astrophysics Data System (ADS)

Tan, Y. J.; Bletery, Q.; Fan, W.; Janiszewski, H. A.; Lynch, E.; McCormack, K. A.; Phillips, N. J.; Rousset, B.; Seyler, C.; French, M. E.; Gaherty, J. B.; Regalla, C.

2017-12-01

The discovery of slow earthquakes at subduction zones is one of the major breakthroughs of Earth science in the last two decades. Slow earthquakes involve a wide spectrum of fault slip behaviors and seismic radiation patterns, such as tremor, low-frequency earthquakes, and slow-slip events. The last of these are particularly interesting due to their large moment releases accompanied by minimal ground shaking. Slow-slip events have been reported at various subduction zones ; most of these slow-slip events are located down-dip of the megathrust seismogenic zone, while a few up-dip cases have recently been observed at Nankai and New Zealand. Up-dip slow-slip events illuminate the structure of faulting environments and rupture mechanisms of tsunami earthquakes. Their possible presence and location at a particular subduction zone can help assess earthquake and tsunami hazard for that region. However, their typical location distant from the coast requires the development of techniques using offshore instrumentation. Here, we investigate the absolute pressure gauges (APG) of the Cascadia Initiative, a four year amphibious seismic experiment, to search for possible shallow up-dip slow-slip events in the Cascadia subduction zone. These instruments are collocated with ocean bottom seismometers (OBS) and located close to buoys and onshore GPS stations, offering the opportunity to investigate the utility of multiple datasets. Ultimately, we aim to develop a protocol to analyze APG data for offshore shallow slow-slip event detections and quantify uncertainties, with direct applications to understanding the up-dip subduction interface system in Cascadia.

Calibration of the Root Zone Water Quality Model and Application of Data Assimilation Techniques to Estimate Profile Soil Moisture

USDA-ARS?s Scientific Manuscript database

Estimation of soil moisture has received considerable attention in the areas of hydrology, agriculture, meteorology and environmental studies because of its role in the partitioning water and energy at the land surface. In this study, the USDA, Agricultural Research Service, Root Zone Water Quality ...

Root Zone Water Quality Model (RZWQM2): Model use, calibration, and validation

USDA-ARS?s Scientific Manuscript database

The Root Zone Water Quality Model (RZWQM2) has been used widely for simulating agricultural management effects on crop production and soil and water quality. Although it is a one-dimensional model it has many desirable features for the modeling community. This paper outlines the principles of calibr...

76 FR 10569 - Request for Comments on the Internet Assigned Numbers Authority (IANA) Functions

Federal Register 2010, 2011, 2012, 2013, 2014

2011-02-25

... responsibilities associated with Internet DNS root zone management; (3) the allocation of Internet numbering resources; and (4) other services related to the management of the .ARPA and .INT top- level domains. The... responsibilities associated with Internet DNS root zone management; (3) the allocation of Internet numbering...

Multi-decadal analysis of root-zone soil moisture applying the exponential filter across CONUS

USDA-ARS?s Scientific Manuscript database

his study applied the exponential filter to produce an estimate of root-zone soil moisture (RZSM). Four types of microwave-based, surface satellite soil moisture were used. The core remotely sensed data for this study came from NASA’s long lasting AMSR-E mission. Additionally three other products we...

Persistence and memory timescales in root-zone soil moisture dynamics

Treesearch

Khaled Ghannam; Taro Nakai; Athanasios Paschalis; Andrew C. Oishi; Ayumi Kotani; Yasunori Igarashi; Tomo' omi Kumagai; Gabriel G. Katul

2016-01-01

The memory timescale that characterizes root-zone soil moisture remains the dominant measure in seasonal forecasts of land-climate interactions. This memory is a quasi-deterministic timescale associated with the losses (e.g., evapotranspiration) from the soil column and is often interpreted as persistence in soil moisture states. Persistence, however,...

Osmotic and elastic adjustments in cold desert shrubs differing in rooting depth: coping with drought and subzero temperatures

Treesearch

Fabian G. Scholz; Sandra J. Bucci; Nadia Arias; Frederick C. Meinzer; Guillermo Goldstein

2012-01-01

Physiological adjustments to enhance tolerance or avoidance of summer drought and winter freezing were studied in shallow- to deep-rooted Patagonian cold desert shrubs. We measured leaf water potential, osmotic potential, tissue elasticity, stem hydraulic characteristics, and stomatal conductance across species throughout the year, and assessed tissue damage by subzero...

Groundwater-quality data and regional trends in the Virginia Coastal Plain, 1906-2007

USGS Publications Warehouse

McFarland, Randolph E.

2010-01-01

A newly developed regional perspective of the hydrogeology of the Virginia Coastal Plain incorporates updated information on groundwater quality in the area. Local-scale groundwater-quality information is provided by a comprehensive dataset compiled from multiple Federal and State agency databases. Groundwater-sample chemical-constituent values and related data are presented in tables, summaries, location maps, and discussions of data quality and limitations. Spatial trends in groundwater quality and related processes at the regional scale are determined from interpretive analyses of the sample data. Major ions that dominate the chemical composition of groundwater in the deep Piney Point, Aquia, and Potomac aquifers evolve eastward and with depth from (1) 'hard' water, dominated by calcium and magnesium cations and bicarbonate and carbonate anions, to (2) 'soft' water, dominated by sodium and potassium cations and bicarbonate and carbonate anions, and lastly to (3) 'salty' water, dominated by sodium and potassium cations and chloride anions. Chemical weathering of subsurface sediments is followed by ion exchange by clay and glauconite, and subsequently by mixing with seawater along the saltwater-transition zone. The chemical composition of groundwater in the shallower surficial and Yorktown-Eastover aquifers, and in basement bedrock along the Fall Zone, is more variable as a result of short flow paths between closely located recharge and discharge areas and possibly some solutes originating from human sources. The saltwater-transition zone is generally broad and landward-dipping, based on groundwater chloride concentrations that increase eastward and with depth. The configuration is convoluted across the Chesapeake Bay impact crater, however, where it is warped and mounded along zones having vertically inverted chloride concentrations that decrease with depth. Fresh groundwater has flushed seawater from subsurface sediments preferentially around the impact crater as a result of broad contrasts between sediment permeabilities. Paths of differential flushing are also focused along the inverted zones, which follow stratigraphic and structural trends southeastward into North Carolina and northeastward beneath the chloride mound across the outer impact crater. Brine within the inner impact crater has probably remained unflushed. Regional movement of the saltwater-transition zone takes place over geologic time scales. Localized movement has been induced by groundwater withdrawal, mostly along shallow parts of the saltwater-transition zone. Short-term episodic withdrawals result in repeated cycles of upconing and downconing of saltwater, which are superimposed on longer-term lateral saltwater intrusion. Effective monitoring for saltwater intrusion needs to address multiple and complexly distributed areas of potential intrusion that vary over time. A broad belt of large groundwater fluoride concentrations underlies the city of Suffolk, and thins and tapers northward. Fluoride in groundwater probably originates by desorbtion from phosphatic sedimentary material. The high fluoride belt possibly was formed by initial adsorbtion of fluoride onto sediment oxyhydroxides, followed by desorbtion along the leading edge of the advancing saltwater-transition zone. Large groundwater iron and manganese concentrations are most common to the west along the Fall Zone, across part of the saltwater-transition zone and eastward, and within shallow groundwater far to the east. Iron and manganese initially produced by mineral dissolution along the Fall Zone are adsorbed eastward and with depth by clay and glauconite, and subsequently desorbed along the leading edge of the advancing saltwater-transition zone. Iron and manganese in shallow groundwater far to the east are produced by reaction of sediment organic matter with oxyhydroxides. Large groundwater nitrate and ammonium concentrations are mostly limited to shallow depths. Most nitrate a

Earthworms and tree roots: A model study of the effect of preferential flow paths on runoff generation and groundwater recharge in steep, saprolitic, tropical lowland catchments

NASA Astrophysics Data System (ADS)

Cheng, Yanyan; Ogden, Fred L.; Zhu, Jianting

2017-07-01

Preferential flow paths (PFPs) affect the hydrological response of humid tropical catchments but have not received sufficient attention. We consider PFPs created by tree roots and earthworms in a near-surface soil layer in steep, humid, tropical lowland catchments and hypothesize that observed hydrological behaviors can be better captured by reasonably considering PFPs in this layer. We test this hypothesis by evaluating the performance of four different physically based distributed model structures without and with PFPs in different configurations. Model structures are tested both quantitatively and qualitatively using hydrological, geophysical, and geochemical data both from the Smithsonian Tropical Research Institute Agua Salud Project experimental catchment(s) in Central Panama and other sources in the literature. The performance of different model structures is evaluated using runoff Volume Error and three Nash-Sutcliffe efficiency measures against observed total runoff, stormflows, and base flows along with visual comparison of simulated and observed hydrographs. Two of the four proposed model structures which include both lateral and vertical PFPs are plausible, but the one with explicit simulation of PFPs performs the best. A small number of vertical PFPs that fully extend below the root zone allow the model to reasonably simulate deep groundwater recharge, which plays a crucial role in base flow generation. Results also show that the shallow lateral PFPs are the main contributor to the observed high flow characteristics. Their number and size distribution are found to be more important than the depth distribution. Our model results are corroborated by geochemical and geophysical observations.

Copper regulates primary root elongation through PIN1-mediated auxin redistribution.

PubMed

Yuan, Hong-Mei; Xu, Heng-Hao; Liu, Wen-Cheng; Lu, Ying-Tang

2013-05-01

The heavy metal copper (Cu) is an essential microelement required for normal plant growth and development, but it inhibits primary root growth when in excess. The mechanism underlying how excess Cu functions in this process remains to be further elucidated. Here, we report that a higher concentration of CuSO4 inhibited primary root elongation of Arabidopsis seedlings by affecting both the elongation and meristem zones. In the meristem zone, meristematic cell division potential was reduced by excess Cu. Further experiments showed that Cu can modulate auxin distribution, resulting in higher auxin activities in both the elongation and meristem zones of Cu-treated roots based on DR5::GUS expression patterns. This Cu-mediated auxin redistribution was shown to be responsible for Cu-mediated inhibition of primary root elongation. Additional genetic and physiological data demonstrated that it was PINFORMED1 (PIN1), but not PIN2 or AUXIN1 (AUX1), that regulated this process. However, Cu-induced hydrogen peroxide accumulation did not contribute to Cu-induced auxin redistribution for inhibition of root elongation. When the possible role of ethylene in this process was analyzed, Cu had a similar impact on the root elongation of both the wild type and the ein2-1 mutant, implying that Cu-mediated inhibition of primary root elongation was not due to the ethylene signaling pathway.

Western Shallow Oil Zone, Elk Hills Field, Kern County, California: General Reservoir Study, Executive Summary: Bittium, Wilhelm, Gusher, and Calitroleum Sands

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carey, K.B.

1987-12-22

The general Reservoir Study of the Western Shallow Oil Zone was prepared by Evans, Carey and Crozier as Task Assignment 009 with the United States Department of Energy. The study addresses the Bittium Wilhelm, Gusher, and Calitroleum Sands and their several sub units and pools. A total of twenty-eight (28) separate reservoir units have been identified and analyzed. Areally, these reservoirs are located in 31 separate sections of land including and lying northwest of sections 5G, 8G, and 32S, all in the Elk Hills Oil Fileds, Naval Petroleum Reserve No. 1, Kern County California. Vertically, the reservoirs occur as shallowmore » as 2600 feet and as deep as 4400 feet. Underlying a composite productive area of about 8300 acres, the reservoirs originally contained an estimated 138,022,000 stock tank barrels of oil, and 85,000 MMCF of gas, 6300 MMCF of which occurred as free gas in the Bittium and W-1B Sands. Since original discovery in April 1919, a total of over 500 wells have been drilled into or through the zones, 120 of which were completed as Western Shallow Oil Zone producers. Currently, these wells are producing about 2452 barrels of oil per day, 1135 barrels of water per day and 5119 MCF of gas per day from the collective reservoirs. Basic pressure, production and assorted technical data were provided by the US Department of Energy staff at Elk Hills. These data were accepted as furnished with no attempt being made by Evans, Carey and Crozier for independent vertification. This study has successfully identified the size and location of all commercially productive pools in the Western Shallow Oil Zone. It has identified the petrophysical properties and the past productive performance of the reservoirs. Primary reserves have been determined and general means of enhancing future recovery have been suggested. 11 figs., 8 tabs.« less

Sensitivity analysis of a new dual-porosity hydroloigcal model coupled with the SOSlope model for the numerical simulations of rainfall triggered shallow landslides.

NASA Astrophysics Data System (ADS)

Schwarz, Massimiliano; Cohen, Denis

2017-04-01

Morphology and extent of hydrological pathways, in combination with the spatio-temporal variability of rainfall events and the heterogeneities of hydro-mechanical properties of soils, has a major impact on the hydrological conditions that locally determine the triggering of shallow landslides. The coupling of these processes at different spatial scales is an enormous challenge for slope stability modeling at the catchment scale. In this work we present a sensitivity analysis of a new dual-porosity hydrological model implemented in the hydro-mechanical model SOSlope for the modeling of shallow landslides on vegetated hillslopes. The proposed model links the calculation of the saturation dynamic of preferential flow-paths based on hydrological and topographical characteristics of the landscape to the hydro-mechanical behavior of the soil along a potential failure surface due to the changes of soil matrix saturation. Furthermore, the hydro-mechanical changes of soil conditions are linked to the local stress-strain properties of the (rooted-)soil that ultimately determine the force redistribution and related deformations at the hillslope scale. The model considers forces to be redistributed through three types of solicitations: tension, compression, and shearing. The present analysis shows how the conditions of deformation due to the passive earth pressure mobilized at the toe of the landslide are particularly important in defining the timing and extension of shallow landslides. The model also shows that, in densely rooted hillslopes, lateral force redistribution under tension through the root-network may substantially contribute to stabilizing slopes, avoiding crack formation and large deformations. The results of the sensitivity analysis are discussed in the context of protection forest management and bioengineering techniques.

Root distribution of Nitraria sibirica with seasonally varying water sources in a desert habitat.

PubMed

Zhou, Hai; Zhao, Wenzhi; Zheng, Xinjun; Li, Shoujuan

2015-07-01

In water-limited environments, the water sources used by desert shrubs are critical to understanding hydrological processes. Here we studied the oxygen stable isotope ratios (δ (18)O) of stem water of Nitraria sibirica as well as those of precipitation, groundwater and soil water from different layers to identify the possible water sources for the shrub. The results showed that the shrub used a mixture of soil water, recent precipitation and groundwater, with shallow lateral roots and deeply penetrating tap (sinker) roots, in different seasons. During the wet period (in spring), a large proportion of stem water in N. sibirica was from snow melt and recent precipitation, but use of these sources declined sharply with the decreasing summer rain at the site. At the height of summer, N. sibirica mainly utilized deep soil water from its tap roots, not only supporting the growth of shoots but also keeping the shallow lateral roots well-hydrated. This flexibility allowed the plants to maintain normal metabolic processes during prolonged periods when little precipitation occurs and upper soil layers become extremely dry. With the increase in precipitation that occurs as winter approaches, the percentage of water in the stem base of a plant derived from the tap roots (deep soil water or ground water) decreased again. These results suggested that the shrub's root distribution and morphology were the most important determinants of its ability to utilize different water sources, and that its adjustment to water availability was significant for acclimation to the desert habitat.

Application of carbonate cyclostratigraphy and borehole geophysics to delineate porosity and preferential flow in the karst limestone of the Biscayne aquifer, SE Florida

USGS Publications Warehouse

Cunningham, K.J.; Renken, R.A.; Wacker, M.A.; Zygnerski, M.R.; Robinson, E.; Shapiro, A.M.; Wingard, G.L.

2006-01-01

Combined analyses of cores, borehole geophysical logs, and cyclostratigraphy produced a new conceptual hydrogeologic framework for the triple-porosity (matrix, touching-vug, and conduit porosity) karst limestone of the Biscayne aquifer in a 0.65 km2 study area, SE Florida. Vertical lithofacies successions, which have recurrent stacking patterns, fit within high-frequency cycles. We define three ideal high-frequency cycles as: (1) upward-shallowing subtidal cycles, (2) upward-shallowing paralic cycles, and (3) aggradational subtidal cycles. Digital optical borehole images, tracers, and flow meters indicate that there is a predictable vertical pattern of porosity and permeability within the three ideal cycles, because the distribution of porosity and permeability is related to lithofacies. Stratiform zones of high permeability commonly occur just above flooding surfaces in the lower part of upward-shallowing subtidal and paralic cycles, forming preferential groundwater flow zones. Aggradational subtidal cycles are either mostly high-permeability zones or leaky, low-permeability units. In the study area, groundwater flow within stratiform high-permeability zones is through a secondary pore system of touching-vug porosity principally related to molds of burrows and pelecypods and to interburrow vugs. Movement of a dye-tracer pulse observed using a borehole fluid-temperature tool during a conservative tracer test indicates heterogeneous permeability. Advective movement of the tracer appears to be most concentrated within a thin stratiform flow zone contained within the lower part of a high-frequency cycle, indicating a distinctly high relative permeability for this zone. Borehole flow-meter measurements corroborate the relatively high permeability of the flow zone. Identification and mapping of such high-permeability flow zones is crucial to conceptualization of karst groundwater flow within a cyclostratigraphic framework. Many karst aquifers are included in cyclic platform carbonates. Clearly, a cyclostratigraphic approach that translates carbonate aquifer heterogeneity into a consistent framework of correlative units will improve simulation of karst groundwater flow. ?? 2006 Geological Society of America.

Major Crustal Fault Zone Trends and Their Relation to Mineral Belts in the North-Central Great Basin, Nevada

USGS Publications Warehouse

Rodriguez, Brian D.; Sampson, Jay A.; Williams, Jackie M.

2007-01-01

The Great Basin physiographic province covers a large part of the western United States and contains one of the world's leading gold-producing areas, the Carlin Trend. In the Great Basin, many sedimentary-rock-hosted disseminated gold deposits occur along such linear mineral-occurrence trends. The distribution and genesis of these deposits is not fully understood, but most models indicate that regional tectonic structures play an important role in their spatial distribution. Over 100 magnetotelluric (MT) soundings were acquired between 1994 and 2001 by the U.S. Geological Survey to investigate crustal structures that may underlie the linear trends in north-central Nevada. MT sounding data were used to map changes in electrical resistivity as a function of depth that are related to subsurface lithologic and structural variations. Two-dimensional (2-D) resistivity modeling of the MT data reveals primarily northerly and northeasterly trending narrow 2-D conductors (1 to 30 ohm-m) extending to mid-crustal depths (5-20 km) that are interpreted to be major crustal fault zones. There are also a few westerly and northwesterly trending 2-D conductors. However, the great majority of the inferred crustal fault zones mapped using MT are perpendicular or oblique to the generally accepted trends. The correlation of strike of three crustal fault zones with the strike of the Carlin and Getchell trends and the Alligator Ridge district suggests they may have been the root fluid flow pathways that fed faults and fracture networks at shallower levels where gold precipitated in favorable host rocks. The abundant northeasterly crustal structures that do not correlate with the major trends may be structures that are open to fluid flow at the present time.

Evaluation of Water Quality Renovation by Advanced Soil-Based Wastewater Treatment Systems

NASA Astrophysics Data System (ADS)

Cooper, J.; Loomis, G.; Kalen, D.; Boving, T.; Morales, I.; DeLuca, J.; Amador, J.

2013-12-01

25% of US households utilize onsite wastewater treatment systems (OWTS) for wastewater management. Advanced technologies were designed to overcome the inadequate wastewater treatment by conventional OWTS in critical shallow water table areas, such as coastal zones, in order to protect ground water quality. In addition to the septic tank and soil drainfield that comprise a conventional OWTS, advanced systems claim improved water renovation with the addition of sand filtration, timed dosing controls, and shallow placement of the infiltrative zone. We determined water quality renovation functions under current water table and temperature conditions, in anticipation of an experiment to measure OWTS response to a climate change scenario of 30-cm increase in water table elevation and 4C temperature increase. Replicate (n=3) intact soil mesocosms were used to evaluate the effectiveness of drainfields with a conventional wastewater delivery (pipe-and-stone) compared to two types of pressurized, shallow narrow drainfield. Results under steady state conditions indicate complete removal of fecal coliform bacteria, phosphorus and BOD by all soil-based systems. By contrast, removal of total nitrogen inputs was 16% in conventional and 11% for both advanced drainfields. Effluent waters maintained a steady state pH between 3.2 - 3.7 for all technologies. Average DO readings were 2.9mg/L for conventional drainfield effluent and 4.6mg/L for advanced, showing the expected oxygen uptake with shallow placement of the infiltrative zone. The conventional OWTS is outperforming the advanced with respect to nitrogen removal, but renovating wastewater equivalently for all other contaminants of concern. The results of this study are expected to facilitate development of future OWTS regulation and planning guidelines, particularly in coastal zones and in the face of a changing climate.

Influence of increasing convergence obliquity and shallow slab geometry onto tectonic deformation and seismogenic behavior along the Northern Lesser Antilles zone

NASA Astrophysics Data System (ADS)

Laurencin, M.; Graindorge, D.; Klingelhoefer, F.; Marcaillou, B.; Evain, M.

2018-06-01

In subduction zones, the 3D geometry of the plate interface is one of the key parameters that controls margin tectonic deformation, interplate coupling and seismogenic behavior. The North American plate subducts beneath the convex Northern Lesser Antilles margin. This convergent plate boundary, with a northward increasing convergence obliquity, turns into a sinistral strike-slip limit at the northwestern end of the system. This geodynamic context suggests a complex slab geometry, which has never been imaged before. Moreover, the seismic activity and particularly the number of events with thrust focal mechanism compatible with subduction earthquakes, increases northward from the Barbuda-Anguilla segment to the Anguilla-Virgin Islands segment. One of the major questions in this area is thus to analyze the influence of the increasing convergence obliquity and the slab geometry onto tectonic deformation and seismogenic behavior of the subduction zone. Based on wide-angle and multichannel reflection seismic data acquired during the Antithesis cruises (2013-2016), we decipher the deep structure of this subduction zone. Velocity models derived from wide-angle data acquired across the Anegada Passage are consistent with the presence of a crust of oceanic affinity thickened by hotspot magmatism and probably affected by the Upper Cretaceous-Eocene arc magmatism forming the 'Great Arc of the Caribbean'. The slab is shallower beneath the Anguilla-Virgin Islands margin segment than beneath the Anguilla-Barbuda segment which is likely to be directly related to the convex geometry of the upper plate. This shallower slab is located under the forearc where earthquakes and partitioning deformations increase locally. Thus, the shallowing slab might result in local greater interplate coupling and basal friction favoring seismic activity and tectonic partitioning beneath the Virgin Islands platform.

Magnetotelluric Investigation in the Jiyang Depression and its Adjacent Areas

NASA Astrophysics Data System (ADS)

Zhang, L.; Hao, T.; Duan, Q.

2008-12-01

The Jiyang Depression is a secondary tectonic unit of the Bohai Bay Basin, and is a Mesozoic-Cenozoic continental-facie depositional depression. The Jiyang Depression consists of the Dongying, Zanhua, Chezhen, and Huimin sags, and the Yihezhuang, Chenjiazhuang, Qingcheng, Binxian, Guangrao, Shouguang, and heaves. In order to delineate shallow and deep structures of the depression, we conduct a magnetotelluric (MT) investigation in the Jiyang Depression and its adjacent areas. We use a remote reference setup to reduce noise disturbance, when several magnetotelluric sounding stations are measuring synchronously at different sites. The acquired MT data are to be processed and interpreted. We execute time series processing with the remote reference technique. The surveyed area is seriously interfered by noise. To improve quality of the data, we perform noise identification and manual selection of the time series segments. Identification of polarization modes is an important task for MT data qualitative interpretation. We apply for a PCA (principal component analysis) based method to automatically identify apparent polarized resistivity curves of TE and TM modes. The method recognizes the distortion and major variation of TE and TM curves and distinguishes the two kinds of curves with principal component analysis. From the apparent resistivity-frequency profile result, we can see that the Chenning Uplift and the Chenjiazhuang Heave reveal a 3-layered structure of medium-low-high, from the shallow to the deep. The structure is especially distinct for the Chenning Uplift, where there is a laterally steady-spreading high- resistivity zone corresponding to the frequency band lower than 1 Hz. The Dongying Sag is characteristic of high-low-medium from the shallow to the deep, and has a low-resistivity anomaly zone with obvious and wide lateral extending in the medium frequency band, which reflects that the deposition thickness of the basin is relatively big. The Guangrao Heave and the Shouguang Heave are of a medium-low-high structure from the shallow to the deep. From the impedance phase-frequency profile image, it can be seen that electrical anomalies appear as a large variation in the cross direction, which indicates the complicated features of the research area. We use the 2-D Mackie inversion method to obtain underground electrical distribution of the surveyed area. We select the TE, TM, and joint TE-TM curves to realize inversion processing. The inversion result of the TM mode is used for further interpretation because the fitting conditions of the TM mode is better and the corresponding inversion result coincides well with geologic data. From the inversion result, we can see that the Chenning Uplift and the Changwei Depression to the south of the Guangrao Heave are of high-resistivity. The low-resisitivity range of the Dongying Sag shows that the bottom surface of the basin is about 8-10 km deep, which almost coincides with the published data. Generally speaking, the basement structures of four segments, the Chengning Uplift, the Chenzhen-Chenjiazhuang Heave, the Dongying Sag, and the Changwei Depression, differs greatly, and shows an overall feature that the uplift areas have root while the burial hills in the depression areas are with no root. It may indicate a prospective for pre-Cenozoic oil and gas resources.

Seismogenic structures of the central Apennines and its implication for seismic hazard

NASA Astrophysics Data System (ADS)

Zheng, Y.; Riaz, M. S.; Shan, B.

2017-12-01

The central Apennines belt is formed during the Miocene-to-Pliocene epoch under the environment where the Adriatic Plate collides with and plunges beneath the Eurasian Plate, eventually formed a fold and thrust belt. This active fold and thrust belt has experienced relatively frequent moderate-magnitude earthquakesover, as well as strong destructive earthquakes such as the 1997 Umbira-Marche sequence, the 2009 Mw 6.3 L'Aquila earthquake sequence, and three strong earthquakes occurred in 2016. Such high seismicity makes it one of the most active tectonic zones in the world. Moreover, most of these earthquakes are normal fault events with shallow depths, and most earthquakes occurred in the central Apennines are of lower seismic energy to moment ratio. What seismogenic structure causes such kind of seismic features? and how about the potential seismic hazard in the study region? In order to make in-depth understanding about the seismogenic structures in this reion, we collected seismic data from the INGV, Italy, to model the crustal structure, and to relocate the earthquakes. To improve the spatial resolution of the tomographic images, we collected travel times from 27627 earthquakes with M>1.7 recorded at 387 seismic stations. Double Difference Tomography (hereafter as DDT) is applied to build velocity structures and earthquake locations. Checkerboard test confirms that the spatial resolution between the depths range from 5 20km is better than 10km. The travel time residual is significantly decreased from 1208 ms to 70 ms after the inversion. Horizontal Vp images show that mostly earthquakes occurred in high anomalies zones, especially between 5 10km, whereas at the deeper depths, some of the earthquakes occurred in the low Vp anomalies. For Vs images, shallow earthquakes mainly occurred in low anomalies zone, at depths range of 10 15km, earthquakes are mainly concentrated in normal velocity or relatively lower anomalies zones. Moreover, mostly earthquakes occurred in high Poisson ratio zones, especially at shallower depths. Since high Poisson's ratio anomalies are usually correspondent to weaker zones, and mostly earthquakes are occurred at the shallow depths. Due to this reason, the strength should be lower, so that the seismic energy to moment ratio is also lower.

78 FR 74079 - Fisheries of the Exclusive Economic Zone Off Alaska; Gulf of Alaska; Proposed 2014 and 2015...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-12-10

... trend for pollock, Pacific cod, deep-water flatfish, Pacific ocean perch, northern rockfish, shortraker..., shallow-water flatfish, rex sole, arrowtooth flounder, flathead sole, rougheye rockfish, demersal shelf... include the TACs for shallow-water flatfish in the West Yakutat and Southeast Outside Districts of the GOA...

78 FR 13161 - Fisheries of the Exclusive Economic Zone Off Alaska; Gulf of Alaska; Final 2013 and 2014 Harvest...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-02-26

... halibut PSC trawl limits between the trawl gear deep-water and the shallow-water species fishery... for pollock, sablefish, deep-water flatfish, rex sole, Pacific ocean perch, northern rockfish... less than the ABCs for Pacific cod, shallow-water flatfish, arrowtooth flounder, flathead sole, ``other...

[Effects and mechanisms of plant roots on slope reinforcement and soil erosion resistance: a research review].

PubMed

Xiong, Yan-Mei; Xia, Han-Ping; Li, Zhi-An; Cai, Xi-An

2007-04-01

Plant roots play an important role in resisting the shallow landslip and topsoil erosion of slopes by raising soil shear strength. Among the models in interpreting the mechanisms of slope reinforcement by plant roots, Wu-Waldron model is a widely accepted one. In this model, the reinforced soil strength by plant roots is positively proportional to average root tensile strength and root area ratio, the two most important factors in evaluating slope reinforcement effect of plant roots. It was found that soil erosion resistance increased with the number of plant roots, though no consistent quantitative functional relationship was observed between them. The increase of soil erosion resistance by plant roots was mainly through the actions of fiber roots less than 1 mm in diameter, while fiber roots enhanced the soil stability to resist water dispersion via increasing the number and diameter of soil water-stable aggregates. Fine roots could also improve soil permeability effectively to decrease runoff and weaken soil erosion.

Evolution of the Median Tectonic Line fault zone, SW Japan, during exhumation

NASA Astrophysics Data System (ADS)

Shigematsu, Norio; Kametaka, Masao; Inada, Noriyuki; Miyawaki, Masahiro; Miyakawa, Ayumu; Kameda, Jun; Togo, Tetsuhiro; Fujimoto, Koichiro

2017-01-01

Like many crustal-scale fault zones, the Median Tectonic Line (MTL) fault zone in Japan preserves fault rocks that formed across a broad range of physical conditions. We examined the architecture of the MTL at a large new outcrop in order to understand fault behaviours under different crustal levels. The MTL here strikes almost E-W, dips to the north, and juxtaposes the Sanbagawa metamorphic rocks to the south against the Izumi Group sediments to the north. The fault core consists mainly of Sanbagawa-derived fault gouges. The fault zone can be divided into several structural units, including two slip zones (upper and lower slip zones), where the lower slip zone is more conspicuous. Crosscutting relationships among structures and kinematics indicate that the fault zone records four stages of deformation. Microstructures and powder X-ray diffraction (XRD) analyses indicate that the four stages of deformation occurred under different temperature conditions. The oldest deformation (stage 1) was widely distributed, and had a top-to-the-east (dextral) sense of slip at deep levels of the seismogenic zone. Deformation with the same sense of slip, then became localised in the lower slip zone (stage 2). Subsequently, the slip direction in the lower slip zone changed to top-to-the-west (sinistral-normal) (stage 3). The final stage of deformation (stage 4) involved top-to-the-north normal faulting along the two slip zones within the shallow crust (near the surface). The widely distributed stage 1 damage zone characterises the deeper part of the seismogenic zone, while the sets of localised principal slip zones and branching faults of stage 4 characterise shallow depths. The fault zone architecture described in this paper leads us to suggest that fault zones display different behaviours at different crustal levels.

Topographic Control of Aboveground Carbon Pools Across an Environmental Gradient, Eastern Slope of the Rocky Mountains, Colorado.

NASA Astrophysics Data System (ADS)

Swetnam, T. L.; Brooks, P. D.; Gallo, E. L.; Barnard, H. R.; Harpold, A. A.

2015-12-01

Evaluating at high spatial-resolution the topographical and ecological structures of the critical zone (CZ) are now routine with aerial LiDAR. Here we evaluated the eco-hydrological differences of topographic metrics (the independent variables) versus individual tree and gridded aboveground carbon (AGC) pools (as dependent variables) at multiple length-scales across an elevation modified gradient of precipitation and temperature in the Boulder Creek CZ Observatory Watershed, Colorado USA. We describe the responses in AGC within the context of a three-zone eco-hydrological model, e.g. toe slope and valley bottoms (Zone 1), transitional hillslopes (Zone 2), and upper slopes to ridges (Zone 3). In a GIS we compared three separate zero-order basins: (1) the Betasso Preserve: 1,810-2,024 meters above mean sea level (m aμsl), area = 0.45 km2, n = 17,286 trees; (2) Upper and Lower Gordon Gulch: 2,446-2,737 m aμsl, area = 3.57 km2, n = 178,469 trees; and (3) Como Creek: 2,900m-3,560 m aμsl, area = 6.64 km2, n = 317,274 trees. In each of the three catchments Zone 1 held the greatest mean AGC (μ = 52.88-60.97 Mg C ha-1) and maximum AGC (99% confidence interval (CI, p = 0.01) = 152.95-184.95 Mg C ha-1) relative to Zone 2 (μ = 27.84-44.52 Mg C ha-1, 99% CI = 99.67-122.4 Mg C ha-1) and Zone 3 (μ = 12.63-30.33 Mg C ha-1, 99% CI = 62.16-92.65 Mg C ha-1). Topography with negative general curvatures (i.e. convergent shapes) had greater AGC (μ = 73.7-96.3 Mg C ha-1, 99% CI = 189.0-355.8 Mg C ha-1) than positive general curvatures (i.e. divergent shapes) (μ = 17.4-30.8 Mg C ha-1, 99% CI = 88.2-120.4 Mg C ha-1), but only when evaluated at longer length scales (<10 m). Larger AGC pools are postulated to be related to (1) increased soil depth which provides larger rooting zones and (2) access to groundwater along Zone 1, vs Zones 2 and 3 which have (a) shallower soils and (b) less or zero accessibility to groundwater.

Barents Sea Crustal and Upper Mantle Structure from Deep Seismic and Potential Field Data

NASA Astrophysics Data System (ADS)

Aarseth, I.; Mjelde, R.; Breivik, A. J.; Minakov, A.; Huismans, R. S.; Faleide, J. I.

2016-12-01

The Barents Sea basement comprises at least two different domains; the Caledonian in the west and the Timanian in the east. Contrasting interpretations have been published recently, as the transition between these two domains is not well constrained. Interpretations of new high-quality magnetic data covering most of the SW Barents Sea challenged previous studies of the Late Paleozoic basin configurations in the western and central Barents Sea. Two major directions of Caledonian structures have been proposed by different authors: N-S and SW-NE. Two regional ocean bottom seismic (OBS) profiles, crossing these two major directions, were acquired in 2014.The primary goal in this project is to locate the main Caledonian suture in the western Barents Sea, as well as the possible Barentsia-Baltica suture postulated further eastwards. High velocity anomalies associated with Caledonian eclogites are particularly interesting as they may be related to Caledonian suture zones. The collapse of the Caledonian mountain range predominantly along these suture zones is expected to be closely linked to the deposition of Devonian erosional products, and subsequent rifting is likely to be influenced by inheritance of Caledonian trends. P-wave travel-time modelling is done by use of a combined ray-tracing and inversion scheme, and gravity modelling has been used to support the seismic model. The results indicate high P-wave velocities (mostly over 4 km/s) close to the seafloor as well as high velocity (around 6 km/s) zones at shallow depths which are interpreted as volcanic sills. The crustal transect reveals areas of complex geology and velocity inversions. Strong reflections from within the crystalline crust indicate a heterogeneous basement terrain. Gravity modelling agrees with this, as several blocks with variable densities had to be introduced in order to reproduce the observed gravity anomalies. Refractions from the top of the crystalline basement together with reflections from the Moho gives basement velocities from 6.2 km/s at the top to 6.7 km/s at the base of the crust. In the middle of the profile, a rapid deepening of Moho creates a root structure that may be interpreted in terms of a Caledonian suture zone, with the crustal root representing a remnant of the continental collision.

Flavonols Mediate Root Phototropism and Growth through Regulation of Proliferation-to-Differentiation Transition.

PubMed

Silva-Navas, Javier; Moreno-Risueno, Miguel A; Manzano, Concepción; Téllez-Robledo, Bárbara; Navarro-Neila, Sara; Carrasco, Víctor; Pollmann, Stephan; Gallego, F Javier; Del Pozo, Juan C

2016-06-01

Roots normally grow in darkness, but they may be exposed to light. After perceiving light, roots bend to escape from light (root light avoidance) and reduce their growth. How root light avoidance responses are regulated is not well understood. Here, we show that illumination induces the accumulation of flavonols in Arabidopsis thaliana roots. During root illumination, flavonols rapidly accumulate at the side closer to light in the transition zone. This accumulation promotes asymmetrical cell elongation and causes differential growth between the two sides, leading to root bending. Furthermore, roots illuminated for a long period of time accumulate high levels of flavonols. This high flavonol content decreases both auxin signaling and PLETHORA gradient as well as superoxide radical content, resulting in reduction of cell proliferation. In addition, cytokinin and hydrogen peroxide, which promote root differentiation, induce flavonol accumulation in the root transition zone. As an outcome of prolonged light exposure and flavonol accumulation, root growth is reduced and a different root developmental zonation is established. Finally, we observed that these differentiation-related pathways are required for root light avoidance. We propose that flavonols function as positional signals, integrating hormonal and reactive oxygen species pathways to regulate root growth direction and rate in response to light. © 2016 American Society of Plant Biologists. All rights reserved.

Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote Root Hair Elongation

PubMed Central

Wang, Tao; Li, Chengxiang; Wu, Zhihua; Jia, Yancui; Wang, Hong; Sun, Shiyong; Mao, Chuanzao; Wang, Xuelu

2017-01-01

Abscisic acid (ABA) plays an essential role in root hair elongation in plants, but the regulatory mechanism remains to be elucidated. In this study, we found that exogenous ABA can promote rice root hair elongation. Transgenic rice overexpressing SAPK10 (Stress/ABA-activated protein kinase 10) had longer root hairs; rice plants overexpressing OsABIL2 (OsABI-Like 2) had attenuated ABA signaling and shorter root hairs, suggesting that the effect of ABA on root hair elongation depends on the conserved PYR/PP2C/SnRK2 ABA signaling module. Treatment of the DR5-GUS and OsPIN-GUS lines with ABA and an auxin efflux inhibitor showed that ABA-induced root hair elongation depends on polar auxin transport. To examine the transcriptional response to ABA, we divided rice root tips into three regions: short root hair, long root hair and root tip zones; and conducted RNA-seq analysis with or without ABA treatment. Examination of genes involved in auxin transport, biosynthesis and metabolism indicated that ABA promotes auxin biosynthesis and polar auxin transport in the root tip, which may lead to auxin accumulation in the long root hair zone. Our findings shed light on how ABA regulates root hair elongation through crosstalk with auxin biosynthesis and transport to orchestrate plant development. PMID:28702040

Flavonols Mediate Root Phototropism and Growth through Regulation of Proliferation-to-Differentiation Transition

PubMed Central

Silva-Navas, Javier; Moreno-Risueno, Miguel A.; Manzano, Concepción; Téllez-Robledo, Bárbara; Navarro-Neila, Sara; Carrasco, Víctor; Pollmann, Stephan

2016-01-01

Roots normally grow in darkness, but they may be exposed to light. After perceiving light, roots bend to escape from light (root light avoidance) and reduce their growth. How root light avoidance responses are regulated is not well understood. Here, we show that illumination induces the accumulation of flavonols in Arabidopsis thaliana roots. During root illumination, flavonols rapidly accumulate at the side closer to light in the transition zone. This accumulation promotes asymmetrical cell elongation and causes differential growth between the two sides, leading to root bending. Furthermore, roots illuminated for a long period of time accumulate high levels of flavonols. This high flavonol content decreases both auxin signaling and PLETHORA gradient as well as superoxide radical content, resulting in reduction of cell proliferation. In addition, cytokinin and hydrogen peroxide, which promote root differentiation, induce flavonol accumulation in the root transition zone. As an outcome of prolonged light exposure and flavonol accumulation, root growth is reduced and a different root developmental zonation is established. Finally, we observed that these differentiation-related pathways are required for root light avoidance. We propose that flavonols function as positional signals, integrating hormonal and reactive oxygen species pathways to regulate root growth direction and rate in response to light. PMID:26628743

Miscellaneous chemical basin expedited site characterization report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Riha, B.D.; Pemberton, B.E.; Rossabi, J.

1996-12-01

A total of twenty nine cone penetrometer test (CPT) pushes in three weeks were conducted for vadose zone characterization of the Miscellaneous Chemical Basin (MCB) waste unit at the Savannah River Site. The shallow, unlined basin received liquid chemical wastes over an 18 year period beginning in 1956. This characterization was initiated to determine the vertical and lateral extent of contamination in the vadose zone and to install vadose zone wells for remediation by barometric pumping or active vapor extraction to help prevent further contamination of groundwater. The CPT locations within the waste site were selected based on results frommore » previous shallow soil gas surveys, groundwater contamination data, and the suspected basin center. Geophysical data and soil gas samples were collected at twenty five locations and twenty five vadose zone wells were installed. The wells were screened to target the clay zones and areas of higher soil gas concentrations. The well construction diagrams are provided in Appendix B. Baro-Ball{trademark} valves for enhanced barometric pumping were installed on each well upon completion to immediately begin the remediation treatability study at the site.« less

Partial Root-Zone Drying of Olive (Olea europaea var. 'Chetoui') Induces Reduced Yield under Field Conditions.

PubMed

Dbara, Soumaya; Haworth, Matthew; Emiliani, Giovani; Ben Mimoun, Mehdi; Gómez-Cadenas, Aurelio; Centritto, Mauro

2016-01-01

The productivity of olive trees in arid and semi-arid environments is closely linked to irrigation. It is necessary to improve the efficiency of irrigation techniques to optimise the amount of olive fruit produced in relation to the volume of water used. Partial root-zone drying (PRD) is a water saving irrigation technique that theoretically allows the production of a root-to-shoot signal that modifies the physiology of the above-ground parts of the plant; specifically reducing stomatal conductance (gs) and improving water use efficiency (WUE). Partial root-zone drying has been successfully applied under field conditions to woody and non-woody crops; yet the few previous trials with olive trees have produced contrasting results. Thirty year-old olive trees (Olea europaea 'var. Chetoui') in a Tunisian grove were exposed to four treatments from May to October for three-years: 'control' plants received 100% of the potential evapotranspirative demand (ETc) applied to the whole root-zone; 'PRD100' were supplied with an identical volume of water to the control plants alternated between halves of the root-zone every ten-days; 'PRD50' were given 50% of ETc to half of the root-system, and; 'rain-fed' plants received no supplementary irrigation. Allowing part of the root-zone to dry resulted in reduced vegetative growth and lower yield: PRD100 decreased yield by ~47% during productive years. During the less productive years of the alternate bearing cycle, irrigation had no effect on yield; this suggests that withholding of water during 'off-years' may enhance the effectiveness of irrigation over a two-year cycle. The amount and quality of oil within the olive fruit was unaffected by the irrigation treatment. Photosynthesis declined in the PRD50 and rain-fed trees due to greater diffusive limitations and reduced biochemical uptake of CO2. Stomatal conductance and the foliar concentration of abscisic acid (ABA) were not altered by PRD100 irrigation, which may indicate the absence of a hormonal root-to-shoot signal. Rain-fed and PRD50 treatments induced increased stem water potential and increased foliar concentrations of ABA, proline and soluble sugars. The stomata of the olive trees were relatively insensitive to super-ambient increases in [CO2] and higher [ABA]. These characteristics of 'hydro-passive' stomatal behaviour indicate that the 'Chetoui' variety of olive tree used in this study lacks the physiological responses required for the successful exploitation of PRD techniques to increase yield and water productivity. Alternative irrigation techniques such as partial deficit irrigation may be more suitable for 'Chetoui' olive production.

Earthquake activity along the Himalayan orogenic belt

NASA Astrophysics Data System (ADS)

Bai, L.; Mori, J. J.

2017-12-01

The collision between the Indian and Eurasian plates formed the Himalayas, the largest orogenic belt on the Earth. The entire region accommodates shallow earthquakes, while intermediate-depth earthquakes are concentrated at the eastern and western Himalayan syntaxis. Here we investigate the focal depths, fault plane solutions, and source rupture process for three earthquake sequences, which are located at the western, central and eastern regions of the Himalayan orogenic belt. The Pamir-Hindu Kush region is located at the western Himalayan syntaxis and is characterized by extreme shortening of the upper crust and strong interaction of various layers of the lithosphere. Many shallow earthquakes occur on the Main Pamir Thrust at focal depths shallower than 20 km, while intermediate-deep earthquakes are mostly located below 75 km. Large intermediate-depth earthquakes occur frequently at the western Himalayan syntaxis about every 10 years on average. The 2015 Nepal earthquake is located in the central Himalayas. It is a typical megathrust earthquake that occurred on the shallow portion of the Main Himalayan Thrust (MHT). Many of the aftershocks are located above the MHT and illuminate faulting structures in the hanging wall with dip angles that are steeper than the MHT. These observations provide new constraints on the collision and uplift processes for the Himalaya orogenic belt. The Indo-Burma region is located south of the eastern Himalayan syntaxis, where the strike of the plate boundary suddenly changes from nearly east-west at the Himalayas to nearly north-south at the Burma Arc. The Burma arc subduction zone is a typical oblique plate convergence zone. The eastern boundary is the north-south striking dextral Sagaing fault, which hosts many shallow earthquakes with focal depth less than 25 km. In contrast, intermediate-depth earthquakes along the subduction zone reflect east-west trending reverse faulting.

Controls on subsurface methane fluxes and shallow gas formation in Baltic Sea sediment (Aarhus Bay, Denmark)

NASA Astrophysics Data System (ADS)

Flury, Sabine; Røy, Hans; Dale, Andrew W.; Fossing, Henrik; Tóth, Zsuzsanna; Spiess, Volkhard; Jensen, Jørn Bo; Jørgensen, Bo Barker

2016-09-01

Shallow gas accumulates in coastal marine sediments when the burial rate of reactive organic matter beneath the sulfate zone is sufficiently high and the methanogenic zone is sufficiently deep. We investigated the controls on methane production and free methane gas accumulation along a 400 m seismo-acoustic transect across a sharp transition from gas-free into gas-bearing sediment in Aarhus Bay (Denmark). Twelve gravity cores were taken, in which the pore water was analyzed for inorganic solutes while rates of organic carbon mineralization were measured experimentally by 35SO42- radiotracer method. The thickness of organic-rich Holocene mud increased from 5 to 10 m along the transect concomitant with a shallowing of the depth of the sulfate-methane transition from >4 m to 2.5 m. In spite of drastic differences in the distribution of methane and sulfate in the sediment along the transect, there were only small differences in total mineralization, and methanogenesis was only equivalent to about 1% of sulfate reduction. Shallow gas appeared where the mud thickness exceeded 8-9 m. Rates of methanogenesis increased along the transect as did the upward diffusive flux of methane. Interestingly, the increase in the sedimentation rate and Holocene mud thickness had only a modest direct effect on methanogenesis rates in deep sediments. This increase in methane flux, however, triggered a shallowing of the sulfate-methane transition which resulted in a large increase in methanogenesis at the top of the methanogenic zone. Thus, our results demonstrate a positive feedback mechanism that causes a strong enhancement of methanogenesis and explains the apparently abrupt appearance of gas when a threshold thickness of organic-rich mud is exceeded.

The effect of compliant prisms on subduction zone earthquakes and tsunamis

NASA Astrophysics Data System (ADS)

Lotto, Gabriel C.; Dunham, Eric M.; Jeppson, Tamara N.; Tobin, Harold J.

2017-01-01

Earthquakes generate tsunamis by coseismically deforming the seafloor, and that deformation is largely controlled by the shallow rupture process. Therefore, in order to better understand how earthquakes generate tsunamis, one must consider the material structure and frictional properties of the shallowest part of the subduction zone, where ruptures often encounter compliant sedimentary prisms. Compliant prisms have been associated with enhanced shallow slip, seafloor deformation, and tsunami heights, particularly in the context of tsunami earthquakes. To rigorously quantify the role compliant prisms play in generating tsunamis, we perform a series of numerical simulations that directly couple dynamic rupture on a dipping thrust fault to the elastodynamic response of the Earth and the acoustic response of the ocean. Gravity is included in our simulations in the context of a linearized Eulerian description of the ocean, which allows us to model tsunami generation and propagation, including dispersion and related nonhydrostatic effects. Our simulations span a three-dimensional parameter space of prism size, prism compliance, and sub-prism friction - specifically, the rate-and-state parameter b - a that determines velocity-weakening or velocity-strengthening behavior. We find that compliant prisms generally slow rupture velocity and, for larger prisms, generate tsunamis more efficiently than subduction zones without prisms. In most but not all cases, larger, more compliant prisms cause greater amounts of shallow slip and larger tsunamis. Furthermore, shallow friction is also quite important in determining overall slip; increasing sub-prism b - a enhances slip everywhere along the fault. Counterintuitively, we find that in simulations with large prisms and velocity-strengthening friction at the base of the prism, increasing prism compliance reduces rather than enhances shallow slip and tsunami wave height.

Stress interaction at the Lazufre volcanic region, as constrained by InSAR, seismic tomography and boundary element modelling

NASA Astrophysics Data System (ADS)

Nikkhoo, Mehdi; Walter, Thomas R.; Lundgren, Paul; Spica, Zack; Legrand, Denis

2016-04-01

The Azufre-Lastarria volcanic complex in the central Andes has been recognized as a major region of magma intrusion. Both deep and shallow inflating reservoirs inferred through InSAR time series inversions, are the main sources of a multi-scale deformation accompanied by pronounced fumarolic activity. The possible interactions between these reservoirs, as well as the path of propagating fluids and the development of their pathways, however, have not been investigated. Results from recent seismic noise tomography in the area show localized zones of shear wave velocity anomalies, with a low shear wave velocity region at 1 km depth and another one at 4 km depth beneath Lastarria. Although the inferred shallow zone is in a good agreement with the location of the shallow deformation source, the deep zone does not correspond to any deformation source in the area. Here, using the boundary element method (BEM), we have performed an in-depth continuum mechanical investigation of the available ascending and descending InSAR data. We modelled the deep source, taking into account the effect of topography and complex source geometry on the inversion. After calculating the stress field induced by this source, we apply Paul's criterion (a variation on Mohr-Coulomb failure) to recognize locations that are liable for failure. We show that the locations of tensile and shear failure almost perfectly coincide with the shallow and deep anomalies as identified by shear wave velocity, respectively. Based on the stress-change models we conjecture that the deep reservoir controls the development of shallower hydrothermal fluids; a hypothesis that can be tested and applied to other volcanoes.

Seismic identification and origin of shallow gas in the Baiyun Sag Northern South China Sea

NASA Astrophysics Data System (ADS)

Qin, Q.

2016-12-01

The analytics of three dimensional high resolution seismic data and multi-beam data gotten from Baiyun Sag(BYS), the northern South China Sea(SCS) reveals varieties of shallow gas indicators. Such indicators include gas chimneys, enhanced reflections, bright spots, pipes and acoustic blanking. Among them, the enhanced reflections suggest that the free gas has been presented. And, there are also some very high amplitude reflections and they have occurred in both deep and shallow sedimentary sections. Gas chimneys are dominant and pipes (line zones of big faults) also have been observed in much of the surveyed area if observing at 31 lines. Gas chimneys and pipes in the study area can be associated with some known faults that would act as migration pathways from deep fluids. There are some columnar zones of acoustic blanking in the survey area. This suggests that the observed structures in Baiyun sag sediments allow the emission of gases which might be for a large share of source rocks or deep gas reservoir, and there are abundant shallow gas in the Baiyun Sag. As we all know, the obvious characteristics of shallow gas are high pressure and highly dangerous. So our results are very essential to explore resources (hydrocarbon and gas hydrate) in such a petroliferous basin.

Mitigating Groundwater Depletion in North China Plain with Cropping System that Alternate Deep and Shallow Rooted Crops

PubMed Central

Yang, Xiao-Lin; Chen, Yuan-Quan; Steenhuis, Tammo S.; Pacenka, Steven; Gao, Wang-Sheng; Ma, Li; Zhang, Min; Sui, Peng

2017-01-01

In the North China Plain, groundwater tables have been dropping at unsustainable rates of 1 m per year due to irrigation of a double cropping system of winter wheat and summer maize. To reverse the trend, we examined whether alternative crop rotations could save water. Moisture contents were measured weekly at 20 cm intervals in the top 180 cm of soil as part of a 12-year field experiment with four crop rotations: sweet potato→ cotton→ sweet potato→ winter wheat-summer maize (SpCSpWS, 4-year cycle); peanuts → winter wheat-summer maize (PWS, 2-year cycle); ryegrass–cotton→ peanuts→ winter wheat-summer maize (RCPWS, 3-year cycle); and winter wheat-summer maize (WS, each year). We found that, compared to WS, the SpCSpWS annual evapotranspiration was 28% lower, PWS was 19% lower and RCPWS was 14% lower. The yield per unit of water evaporated improved for wheat within any alternative rotation compared to WS, increasing up to 19%. Average soil moisture contents at the sowing date of wheat in the SpCSpWS, PWS, and RCPWS rotations were 7, 4, and 10% higher than WS, respectively. The advantage of alternative rotations was that a deep rooted crop of winter wheat reaching down to 180 cm followed shallow rooted crops (sweet potato and peanut drawing soil moisture from 0 to 120 cm). They benefited from the sequencing and vertical complementarity of soil moisture extraction. Thus, replacing the traditional crop rotation with cropping system that involves rotating with annual shallow rooted crops is promising for reducing groundwater depletion in the North China Plain. PMID:28642779

Role of aquaporin activity in regulating deep and shallow root hydraulic conductance during extreme drought

Treesearch

Daniel M. Johnson; Mark E. Sherrard; Jean-Christophe Domec; Robert B. Jackson

2014-01-01

Key message Deep root hydraulic conductance is upregulated during severe drought and is associated with upregulation in aquaporin activity. Abstract In 2011, Texas experienced the worst single-year drought in its recorded history and, based on tree-ring data, likely itsworst in the pastmillennium. In the Edwards Plateau of Texas, rainfall was 58 % lower and the mean...

Ligament, nerve, and blood vessel anatomy of the lateral zone of the lumbar intervertebral foramina.

PubMed

Yuan, Shi-Guo; Wen, You-Liang; Zhang, Pei; Li, Yi-Kai

2015-11-01

To provide an anatomical basis for intrusive treatment using an approach through the lateral zones of the lumbar intervertebral foramina (LIF), especially for acupotomology lysis, percutaneous transforaminal endoscopy, and lumbar nerve root block. Blood vessels, ligaments, nerves, and adjacent structures of ten cadavers were exposed through the L1-2 to L5-S1 intervertebral foramina and examined. The lateral zones of the LIF were almost filled by ligaments, nerves, and blood vessels, which were separated into compartments by superior/inferior transforaminal ligaments and corporotransverse superior/inferior ligaments. Two zones relatively lacking in blood vessels and nerves (triangular working zones) were found beside the lamina of the vertebral arch and on the root of the transverse processus. Both the ascending lumbar vein and branches of the intervetebral vein were observed in 12 Kambin's triangles, and in only seven Kambin's triangles were without any veins. Nerves and blood vessels are fixed and protected by transforaminal ligaments and/or corporotransverse ligaments. It is necessary to distinguish the ligaments from nerves using transforaminal endoscopy so that the ligaments can be cut without damaging nerves. Care needs to be taken in intrusive operations because of the veins running through Kambin's triangle. We recommend injecting into the lamina of the vertebral arch and the midpoint between the adjacent roots of the transverse processus when administering nerve root block. Blind percutaneous incision and acupotomology lysis is dangerous in the lateral zones of the LIF, as they are filled with nerves and blood vessels.

Assessment of the denitrification process in alluvial wetlands at floodplain scale using the SWAT model

USDA-ARS?s Scientific Manuscript database

As alluvial plains support intensive agricultural activities, they often suffer from groundwater nitrate pollution. Denitrification is recognized as an important process in nitrate pollution control in riparian zones. In shallow aquifer zones influenced by recharged surface water, denitrification ...

Frictional melting of clayey gouge during seismic fault slip: Experimental observation and implications

NASA Astrophysics Data System (ADS)

Han, Raehee; Hirose, Takehiro; Jeong, Gi Young; Ando, Jun-ichi; Mukoyoshi, Hideki

2014-08-01

Clayey gouges are common in fault slip zones at shallow depths. Thus, the fault zone processes and frictional behaviors of the gouges are critical to understanding seismic slip at these depths. We conducted rotary shear tests on clayey gouge (~41 wt % clay minerals) at a seismic slip rate of 1.3 m/s. Here we report that the gouge was melted at 5 MPa of normal stress and room humidity conditions. The initial local melting was followed by melt layer formation. Clay minerals (e.g., smectite and illite) and plagioclase were melted and quenched to glass with numerous vesicles. Both flash heating and bulk temperature increases appear to be responsible for the melting. This observation of clayey gouge melting is comparable to that of natural faults (e.g., Chelungpu fault, Taiwan). Due to heterogeneous fault zone properties (e.g., permeability), frictional melting may be one of the important processes in clayey slip zones at shallow depths.

Performance analysis of a multispectral system for mine detection in the littoral zone

NASA Astrophysics Data System (ADS)

Hargrove, John T.; Louchard, Eric

2004-09-01

Science & Technology International (STI) has developed, under contract with the Office of Naval Research, a system of multispectral airborne sensors and processing algorithms capable of detecting mine-like objects in the surf zone. STI has used this system to detect mine-like objects in a littoral environment as part of blind tests at Kaneohe Marine Corps Base Hawaii, and Panama City, Florida. The airborne and ground subsystems are described. The detection algorithm is graphically illustrated. We report on the performance of the system configured to operate without a human in the loop. A subsurface (underwater bottom proud mine in the surf zone and moored mine in shallow water) mine detection capability is demonstrated in the surf zone, and in shallow water with wave spillage and foam. Our analysis demonstrates that this STI-developed multispectral airborne mine detection system provides a technical foundation for a viable mine counter-measures system for use prior to an amphibious assault.

Shallow subsurface storm flow in a forested headwater catchment: Observations and modeling using a modified TOPMODEL

USGS Publications Warehouse

Scanlon, Todd M.; Raffensperger, Jeff P.; Hornberger, George M.; Clapp, Roger B.

2000-01-01

Transient, perched water tables in the shallow subsurface are observed at the South Fork Brokenback Run catchment in Shenandoah National Park, Virginia. Crest piezometers installed along a hillslope transect show that the development of saturated conditions in the upper 1.5 m of the subsurface is controlled by total precipitation and antecedent conditions, not precipitation intensity, although soil heterogeneities strongly influence local response. The macroporous subsurface storm flow zone provides a hydrological pathway for rapid runoff generation apart from the underlying groundwater zone, a conceptualization supported by the two‐storage system exhibited by hydrograph recession analysis. A modified version of TOPMODEL is used to simulate the observed catchment dynamics. In this model, generalized topographic index theory is applied to the subsurface storm flow zone to account for logarithmic storm flow recessions, indicative of linearly decreasing transmissivity with depth. Vertical drainage to the groundwater zone is required, and both subsurface reservoirs are considered to contribute to surface saturation.

Seismic evidence for a possible deep crustal hot zone beneath Southwest Washington.

PubMed

Flinders, Ashton F; Shen, Yang

2017-08-07

Crustal pathways connecting deep sources of melt and the active volcanoes they supply are poorly understood. Beneath Mounts St. Helens, Adams, and Rainier these pathways connect subduction-induced ascending melts to shallow magma reservoirs. Petrogenetic modeling predicts that when these melts are emplaced as a succession of sills into the lower crust they generate deep crustal hot zones. While these zones are increasingly recognized as a primary site for silicic differentiation at a range of volcanic settings globally, imaging them remains challenging. Near Mount Rainier, ascending melt has previously been imaged ~28 km northwest of the volcano, while to the south, the volcano lies on the margin of a broad conductive region in the deep crust. Using 3D full-waveform tomography, we reveal an expansive low-velocity zone, which we interpret as a possible hot zone, linking ascending melts and shallow reservoirs. This hot zone may supply evolved magmas to Mounts St. Helens and Adams, and possibly Rainier, and could contain approximately twice the melt volume as the total eruptive products of all three volcanoes combined. Hot zones like this may be the primary reservoirs for arc volcanism, influencing compositional variations and spatial-segmentation along the entire 1100 km-long Cascades Arc.

Audio-frequency magnetotelluric imaging of the Hijima fault, Yamasaki fault system, southwest Japan

NASA Astrophysics Data System (ADS)

Yamaguchi, S.; Ogawa, Y.; Fuji-Ta, K.; Ujihara, N.; Inokuchi, H.; Oshiman, N.

2010-04-01

An audio-frequency magnetotelluric (AMT) survey was undertaken at ten sites along a transect across the Hijima fault, a major segment of the Yamasaki fault system, Japan. The data were subjected to dimensionality analysis, following which two-dimensional inversions for the TE and TM modes were carried out. This model is characterized by (1) a clear resistivity boundary that coincides with the downward projection of the surface trace of the Hijima fault, (2) a resistive zone (>500 Ω m) that corresponds to Mesozoic sediment, and (3) shallow and deep two highly conductive zones (30-40 Ω m) along the fault. The shallow conductive zone is a common feature of the Yamasaki fault system, whereas the deep conductor is a newly discovered feature at depths of 800-1,800 m to the southwest of the fault. The conductor is truncated by the Hijima fault to the northeast, and its upper boundary is the resistive zone. Both conductors are interpreted to represent a combination of clay minerals and a fluid network within a fault-related fracture zone. In terms of the development of the fluid networks, the fault core of the Hijima fault and the highly resistive zone may play important roles as barriers to fluid flow on the northeast and upper sides of the conductive zones, respectively.

Seismic evidence for a possible deep crustal hot zone beneath Southwest Washington

USGS Publications Warehouse

Flinders, Ashton; Shen, Yang

2017-01-01

Crustal pathways connecting deep sources of melt and the active volcanoes they supply are poorly understood. Beneath Mounts St. Helens, Adams, and Rainier these pathways connect subduction-induced ascending melts to shallow magma reservoirs. Petrogenetic modeling predicts that when these melts are emplaced as a succession of sills into the lower crust they generate deep crustal hot zones. While these zones are increasingly recognized as a primary site for silicic differentiation at a range of volcanic settings globally, imaging them remains challenging. Near Mount Rainier, ascending melt has previously been imaged ~28 km northwest of the volcano, while to the south, the volcano lies on the margin of a broad conductive region in the deep crust. Using 3D full-waveform tomography, we reveal an expansive low-velocity zone, which we interpret as a possible hot zone, linking ascending melts and shallow reservoirs. This hot zone may supply evolved magmas to Mounts St. Helens and Adams, and possibly Rainier, and could contain approximately twice the melt volume as the total eruptive products of all three volcanoes combined. Hot zones like this may be the primary reservoirs for arc volcanism, influencing compositional variations and spatial-segmentation along the entire 1100 km-long Cascades Arc.

Identifying Hydrologic Flowpaths on Arctic Hillslopes Using Electrical Resistivity and Self Potential

NASA Astrophysics Data System (ADS)

Voytek, E.; Rushlow, C. R.; Godsey, S.; Singha, K.

2015-12-01

Shallow subsurface flow is a dominant process controlling hillslope runoff generation, soil development, and solute reaction and transport. Despite their importance, the location and geometry of flowpaths are difficult to determine. In arctic environments, shallow subsurface flowpaths are limited to a thin zone of seasonal thaw above continuous permafrost, which is traditionally assumed to mimic to surface topography. Here we use a combined approach of electrical resistivity imaging (ERI) and self-potential measurements (SP) to map shallow subsurface flowpaths in and around water tracks, drainage features common to arctic hillslopes. ERI measurements delineate thawed zones in the subsurface that control flowpaths, while SP is sensitive to groundwater flow. We find that areas of low electrical resistivity in the water tracks are deeper than manual thaw depth estimates and variations from surface topography. This finding suggests that traditional techniques significantly underestimate active layer thaw and the extent of the flowpath network on arctic hillslopes. SP measurements identify complex 3-D flowpaths in the thawed zone. Our results lay the groundwork for investigations into the seasonal dynamics, hydrologic connectivity, and climate sensitivity of spatially distributed flowpath networks on arctic hillslopes.

Root gravitropism in maize and Arabidopsis

NASA Technical Reports Server (NTRS)

Evans, Michael L.

1993-01-01

Research during the period 1 March 1992 to 30 November 1993 focused on improvements in a video digitizer system designed to automate the recording of surface extension in plants responding to gravistimulation. The improvements included modification of software to allow detailed analysis of localized extension patterns in roots of Arabidopsis. We used the system to analyze the role of the postmitotic isodiametric growth zone (a region between the meristem and the elongation zone) in the response of maize roots to auxin, calcium, touch and gravity. We also used the system to analyze short-term auxin and gravitropic responses in mutants of Arabidopsis with reduced auxin sensitivity. In a related project, we studied the relationship between growth rate and surface electrical currents in roots by examining the effects of gravity and thigmostimulation on surface potentials in maize roots.

Quantitative Risk Assessment (QRA) for an Underground Blowout Scenario in the Gulf of Mexico (GoM) Well

NASA Astrophysics Data System (ADS)

Tyagi, M.; Zulqarnain, M.

2017-12-01

Offshore oil and gas exploration and production operations, involve the use of some of the cutting edge and challenging technologies of the modern time. These technological complex operations involves the risk of major accidents as well, which have been demonstrated by disasters such as the explosion and fire on the UK production platform piper alpha, the Canadian semi-submersible drilling rig Ocean Ranger and the explosion and capsizing of Deepwater horizon rig in the Gulf of Mexico. By conducting Quantitative Risk Assessment (QRA), safety of various operations as well as their associated risks and significance during the entire life phase of an offshore project can be quantitatively estimated. In an underground blowout, the uncontrolled formation fluids from higher pressure formation may charge up shallower overlying low pressure formations or may migrate to sea floor. Consequences of such underground blowouts range from no visible damage at the surface to the complete loss of well, loss of drilling rig, seafloor subsidence or hydrocarbons discharged to the environment. These blowouts might go unnoticed until the over pressured sands, which are the result of charging from higher pressure reservoir due to an underground blowout. Further, engineering formulas used to estimate the fault permeability and thickness are very simple in nature and may add to uncertainty in the estimated parameters. In this study the potential of a deepwater underground blowout are assessed during drilling life phase of a well in Popeye-Genesis field reservoir in the Gulf of Mexico to estimate the time taken to charge a shallower zone to its leak-off test (LOT) value. Parametric simulation results for selected field case show that for relatively high permeability (k = 40mD) fault connecting a deep over-pressured zone to a shallower low-pressure zone of similar reservoir volumes, the time to recharge the shallower zone up to its threshold LOT value is about 135 years. If the ratio of the reservoir volumes for shallower to deeper zone is about 0.1, the recharging time significantly decreased to 24 years. Also, the hydrocarbons might possibly migrate through casing-wellbore annulus due to delamination fractures between cement interfaces with rock/casing and any other micro annulus gap not isolated by cement.

An index for plant water deficit based on root-weighted soil water content

NASA Astrophysics Data System (ADS)

Shi, Jianchu; Li, Sen; Zuo, Qiang; Ben-Gal, Alon

2015-03-01

Governed by atmospheric demand, soil water conditions and plant characteristics, plant water status is dynamic, complex, and fundamental to efficient agricultural water management. To explore a centralized signal for the evaluation of plant water status based on soil water status, two greenhouse experiments investigating the effect of the relative distribution between soil water and roots on wheat and rice were conducted. Due to the significant offset between the distributions of soil water and roots, wheat receiving subsurface irrigation suffered more from drought than wheat under surface irrigation, even when the arithmetic averaged soil water content (SWC) in the root zone was higher. A significant relationship was found between the plant water deficit index (PWDI) and the root-weighted (rather than the arithmetic) average SWC over root zone. The traditional soil-based approach for the estimation of PWDI was improved by replacing the arithmetic averaged SWC with the root-weighted SWC to take the effect of the relative distribution between soil water and roots into consideration. These results should be beneficial for scheduling irrigation, as well as for evaluating plant water consumption and root density profile.

Can compliant fault zones be used to measure absolute stresses in the upper crust?

NASA Astrophysics Data System (ADS)

Hearn, E. H.; Fialko, Y.

2009-04-01

Geodetic and seismic observations reveal long-lived zones with reduced elastic moduli along active crustal faults. These fault zones localize strain from nearby earthquakes, consistent with the response of a compliant, elastic layer. Fault zone trapped wave studies documented a small reduction in P and S wave velocities along the Johnson Valley Fault caused by the 1999 Hector Mine earthquake. This reduction presumably perturbed a permanent compliant structure associated with the fault. The inferred changes in the fault zone compliance may produce a measurable deformation in response to background (tectonic) stresses. This deformation should have the same sense as the background stress, rather than the coseismic stress change. Here we investigate how the observed deformation of compliant zones in the Mojave Desert can be used to constrain the fault zone structure and stresses in the upper crust. We find that gravitational contraction of the coseismically softened zones should cause centimeters of coseismic subsidence of both the compliant zones and the surrounding region, unless the compliant fault zones are shallow and narrow, or essentially incompressible. We prefer the latter interpretation because profiles of line of sight displacements across compliant zones cannot be fit by a narrow, shallow compliant zone. Strain of the Camp Rock and Pinto Mountain fault zones during the Hector Mine and Landers earthquakes suggests that background deviatoric stresses are broadly consistent with Mohr-Coulomb theory in the Mojave upper crust (with μ ≥ 0.7). Large uncertainties in Mojave compliant zone properties and geometry preclude more precise estimates of crustal stresses in this region. With improved imaging of the geometry and elastic properties of compliant zones, and with precise measurements of their strain in response to future earthquakes, the modeling approach we describe here may eventually provide robust estimates of absolute crustal stress.

Root hydrotropism is controlled via a cortex-specific growth mechanism.

PubMed

Dietrich, Daniela; Pang, Lei; Kobayashi, Akie; Fozard, John A; Boudolf, Véronique; Bhosale, Rahul; Antoni, Regina; Nguyen, Tuan; Hiratsuka, Sotaro; Fujii, Nobuharu; Miyazawa, Yutaka; Bae, Tae-Woong; Wells, Darren M; Owen, Markus R; Band, Leah R; Dyson, Rosemary J; Jensen, Oliver E; King, John R; Tracy, Saoirse R; Sturrock, Craig J; Mooney, Sacha J; Roberts, Jeremy A; Bhalerao, Rishikesh P; Dinneny, José R; Rodriguez, Pedro L; Nagatani, Akira; Hosokawa, Yoichiroh; Baskin, Tobias I; Pridmore, Tony P; De Veylder, Lieven; Takahashi, Hideyuki; Bennett, Malcolm J

2017-05-08

Plants can acclimate by using tropisms to link the direction of growth to environmental conditions. Hydrotropism allows roots to forage for water, a process known to depend on abscisic acid (ABA) but whose molecular and cellular basis remains unclear. Here we show that hydrotropism still occurs in roots after laser ablation removed the meristem and root cap. Additionally, targeted expression studies reveal that hydrotropism depends on the ABA signalling kinase SnRK2.2 and the hydrotropism-specific MIZ1, both acting specifically in elongation zone cortical cells. Conversely, hydrotropism, but not gravitropism, is inhibited by preventing differential cell-length increases in the cortex, but not in other cell types. We conclude that root tropic responses to gravity and water are driven by distinct tissue-based mechanisms. In addition, unlike its role in root gravitropism, the elongation zone performs a dual function during a hydrotropic response, both sensing a water potential gradient and subsequently undergoing differential growth.

Shallow system rejuvenation and magma discharge trends at Piton de la Fournaise volcano (La Réunion Island)

NASA Astrophysics Data System (ADS)

Coppola, D.; Di Muro, A.; Peltier, A.; Villeneuve, N.; Ferrazzini, V.; Favalli, M.; Bachèlery, P.; Gurioli, L.; Harris, A. J. L.; Moune, S.; Vlastélic, I.; Galle, B.; Arellano, S.; Aiuppa, A.

2017-04-01

Basaltic magma chambers are often characterized by emptying and refilling cycles that influence their evolution in space and time, and the associated eruptive activity. During April 2007, the largest historical eruption of Piton de la Fournaise (Île de La Réunion, France) drained the shallow plumbing system (> 240 ×106 m3) and resulted in collapse of the 1-km-wide summit crater. Following these major events, Piton de la Fournaise entered a seven-year long period of near-continuous deflation interrupted, in June 2014, by a new phase of significant inflation. By integrating multiple datasets (lava discharge rates, deformation, seismicity, gas flux, gas composition, and lava chemistry), we here show that the progressive migration of magma from a deeper (below sea level) storage zone gradually rejuvenated and pressurized the above-sea-level portion of the magmatic system consisting of a vertically-zoned network of relatively small-volume magma pockets. Continuous inflation provoked four small (< 5 ×106 m3) eruptions from vents located close to the summit cone and culminated, during August-October 2015, with a chemically zoned eruption that erupted 45 ± 15 ×106 m3 of lava. This two-month-long eruption evolved through (i) an initial phase of waning discharge, associated to the withdrawal of differentiated magma from the shallow system, into (ii) a month-long phase of increasing lava and SO2 fluxes at the effusive vent, coupled with CO2 enrichment of summit fumaroles, and involving emission of less differentiated lavas, to end with, (iii) three short-lived (∼2 day-long) pulses in lava and gas flux, coupled with arrival of cumulative olivine at the surface and deflation. The activity observed at Piton de la Fournaise in 2014 and 2015 points to a new model of shallow system rejuvenation and discharge, whereby continuous magma supply causes eruptions from increasingly deeper and larger magma storage zones. Downward depressurization continues until unloading of the deepest, least differentiated magma triggers pulses in lava and gas flux, accompanied by rapid contraction of the volcano edifice, that empties the main shallow reservoir and terminates the cycle. Such an unloading process may characterize the evolution of shallow magmatic systems at other persistently active effusive centers.

Structural interpretation of El Hierro (Canary Islands) rifts system from gravity inversion modelling

NASA Astrophysics Data System (ADS)

Sainz-Maza, S.; Montesinos, F. G.; Martí, J.; Arnoso, J.; Calvo, M.; Borreguero, A.

2017-08-01

Recent volcanism in El Hierro Island is mostly concentrated along three elongated and narrow zones which converge at the center of the island. These zones with extensive volcanism have been identified as rift zones. The presence of similar structures is common in many volcanic oceanic islands, so understanding their origin, dynamics and structure is important to conduct hazard assessment in such environments. There is still not consensus on the origin of the El Hierro rift zones, having been associated with mantle uplift or interpreted as resulting from gravitational spreading and flank instability. To further understand the internal structure and origin of the El Hierro rift systems, starting from the previous gravity studies, we developed a new 3D gravity inversion model for its shallower layers, gathering a detailed picture of this part of the island, which has permitted a new interpretation about these rifts. Previous models already identified a main central magma accumulation zone and several shallower high density bodies. The new model allows a better resolution of the pathways that connect both levels and the surface. Our results do not point to any correspondence between the upper parts of these pathways and the rift identified at the surface. Non-clear evidence of progression toward deeper parts into the volcanic system is shown, so we interpret them as very shallow structures, probably originated by local extensional stresses derived from gravitational loading and flank instability, which are used to facilitate the lateral transport of magma when it arrives close to the surface.

PRZM-3, A MODEL FOR PREDICTING PESTICIDE AND NITROGEN FATE IN THE CROP ROOT AND UNSATURATED SOIL ZONES: USER'S MANUAL FOR RELEASE 3.12.2

EPA Science Inventory

This publication contains documentation for the PRZM-3 model. PRZM-3 is the most recent version of a modeling system that links two subordinate models, PRZM and VADOFT, in order to predict pesticide transport and transformation down through the crop root and unsaturated soil zone...

Application of Data Assimilation with the Root Zone Water Quality Model for Soil Moisture Profile Estimation

USDA-ARS?s Scientific Manuscript database

The Ensemble Kalman Filter (EnKF), a popular data assimilation technique for non-linear systems was applied to the Root Zone Water Quality Model. Measured soil moisture data at four different depths (5cm, 20cm, 40cm and 60cm) from two agricultural fields (AS1 and AS2) in northeastern Indiana were us...

Assessment of the SMAP Level-4 Surface and Root-Zone Soil Moisture Product Using In Situ Measurements

USDA-ARS?s Scientific Manuscript database

The Soil Moisture Active Passive (SMAP) mission Level-4 Surface and Root-Zone Soil Moisture (L4_SM) data product is generated by assimilating SMAP L-band brightness temperature observations into the NASA Catchment land surface model. The L4_SM product is available from 31 March 2015 to present (with...

Soil moisture inferences from thermal infrared measurements of vegetation temperatures

NASA Technical Reports Server (NTRS)

Jackson, R. D. (Principal Investigator)

1981-01-01

Thermal infrared measurements of wheat (Triticum durum) canopy temperatures were used in a crop water stress index to infer root zone soil moisture. Results indicated that one time plant temperature measurement cannot produce precise estimates of root zone soil moisture due to complicating plant factors. Plant temperature measurements do yield useful qualitative information concerning soil moisture and plant condition.

Oxidative Stress and NO Signalling in the Root Apex as an Early Response to Changes in Gravity Conditions

PubMed Central

Mugnai, Sergio; Monetti, Emanuela; Voigt, Boris; Volkmann, Dieter; Mancuso, Stefano

2014-01-01

Oxygen influx showed an asymmetry in the transition zone of the root apex when roots were placed horizontally on ground. The influx increased only in the upper side, while no changes were detected in the division and in the elongation zone. Nitric oxide (NO) was also monitored after gravistimulation, revealing a sudden burst only in the transition zone. In order to confirm these results in real microgravity conditions, experiments have been set up by using parabolic flights and drop tower. The production of reactive oxygen species (ROS) was also monitored. Oxygen, NO, and ROS were continuously monitored during normal and hyper- and microgravity conditions in roots of maize seedlings. A distinct signal in oxygen and NO fluxes was clearly detected only in the apex zone during microgravity, with no significant changes in normal and in hypergravity conditions. The same results were obtained by ROS measurement. The detrimental effect of D'orenone, disrupting the polarised auxin transport, on the onset of the oxygen peaks during the microgravity period was also evaluated. Results indicates an active role of NO and ROS as messengers during the gravitropic response, with probable implications in the auxin redistribution. PMID:25197662

Tomato growth as affected by root-zone temperature and the addition of gibberellic acid and kinetin to nutrient solutions

NASA Technical Reports Server (NTRS)

Bugbee, B.; White, J. W.; Salisbury, F. B. (Principal Investigator)

1984-01-01

The effect of root-zone temperature on young tomato plants (Lycopersicon esculentum Mill. cv. Heinz 1350) was evaluated in controlled environments using a recirculating solution culture system. Growth rates were measured at root-zone temperatures of 15 degrees, 20 degrees, 25 degrees, and 30 degrees C in a near optimum foliar environment. Optimum growth occurred at 25 degrees to 30 degrees during the first 4 weeks of growth and 20 degrees to 25 degrees during the 5th and 6th weeks. Growth was severely restricted at 15 degrees. Four concentrations of gibberellic acid (GA3) and kinetin were added to the nutrient solution in a separate trial; root-zone temperature was maintained at 15 degrees and 25 degrees. Addition of 15 micromoles GA3 to solutions increased specific leaf area, total leaf area, and dry weight production of plants in both temperature treatments. GA3-induced growth stimulation was greater at 15 degrees than at 25 degrees. GA3 may promote growth by increasing leaf area, enhancing photosynthesis per unit leaf area, or both. Kinetic was not useful in promoting growth at either temperature.

Exchange of soil moisture between patches of wild-olive and pasture sustains evapotranspiration of a Mediterranean ecosystem in both wet and dry seasons

NASA Astrophysics Data System (ADS)

Curreli, M.; Montaldo, N.; Oren, R.

2017-12-01

Partitioning evapotranspiration in water-limited environments, such as Mediterranean ecosystems, could give information on vegetation and hydraulic dynamics. Indeed, in such ecosystems, trees may survive prolonged droughts by uptake of water by dimorphic root system: deep roots and shallower lateral roots, extending beyond the crown into inter-trees grassy areas. The water exchange between under canopy areas and treeless patches plays a crucial role on sustaining tree and grass physiological performance during droughts. The study has been performed at the Orroli site, Sardinia (Italy). The landscape is covered by patchy vegetation: wild olives trees in clumps and herbaceous species, drying to bare soil in summer. The climate is characterized by long droughts from May to October and rain events concentrated in the autumn and winter, whit a mean yearly rain of about 700 mm. A 10 m micrometeorological tower equipped with eddy-covariance system has been used for measuring water and energy surface fluxes, as well as key state variables (e.g. temperature, radiations, humidity and wind velocity). Soil moisture was measured with five soil water reflectometers (two below the olive canopy and three in the pasture). To estimate plant water use in the context of soil water dynamic, 33 Granier-type thermal dissipation probes were installed 40 cm aboveground, in representative trees over the eddy covariance footprint. Early analyses show that wild olive continue to transpire even as the soil dries and the pasture desiccates. This reveled hydraulic redistribution system through the plant and the soil, and allows to quantify the reliance of the system on horizontally and vertically differentiated soil compartments. Results shows that during light hours, until transpiration decreases in midday, shallow roots uptake deplete the shallow water content. As transpiration decreases, hydraulically redistributed water provides for both transpiration of wild olives and recharge of shallow soil layers in the inter-tree areas. This consents trees to remain physiologically active during very dry conditions and represent a mechanism of facilitation of the coexistence of tree-grass system.

Hydrologic Controls on Shallow Landslide Location, Size, and Shape

NASA Astrophysics Data System (ADS)

Bellugi, D.; Milledge, D.; Perron, T.; McKean, J. A.; Dietrich, W.; Rulli, M.

2012-12-01

Shallow landslides, typically involving just the soil mantle, are principally controlled by topography, soil and root strengths, and soil thickness, and are typically triggered by storm-induced increases in pore water pressure. The response of a landscape to landslide-triggering storms will thus depend on factors such as rainfall totals, storm intensity and duration, and antecedent moisture conditions. The two dominant mechanisms that generate high pore water pressures at a point are topographically-steered lateral subsurface flow (over timescales of days to weeks), and rapid vertical infiltration (over timescales of minutes to hours). We aim to understand the impact of different storm characteristics and hydrologic regimes on shallow landslide location, size, and shape. We have developed a regional-scale model, which applies a low-parameter grid-based multi-dimensional slope stability model within a novel search algorithm, to generate discrete landslide predictions. This model shows that the spatial organization of parameters such as root strength and pore water pressure has a strong control on shallow landslide location, size, and shape. We apply this model to a field site near Coos Bay, OR, where a ten-year landslide inventory has been mapped onto high-resolution topographic data. Our model predicts landslide size generally increases with increasing rainfall intensity, except when root strength is extremely high and pore pressures are topographically steered. The distribution of topographic index values (the ratios of contributing area to slope) of predicted landslides is a clear signature of the pore water pressure generation mechanism: as laterally dominated flow increases, landslides develop in locations with lower slopes and higher contributing areas; in contrast, in the case of vertically-dominated pore pressure rise, landslides are consistently found in locations with higher slopes and lower contributing areas. While in both cases landslides are found in the hollows, where the soils are sufficiently deep to overcome the effects of root strength, in the laterally-dominated case they are predicted to occur further down the hollows (which matches field observations). The size distribution of landslides is better predicted in our model when vertical infiltration dominates, but the observed distribution of topographic index values follows that predicted when lateral flow dominates. This suggests that both mechanisms must be taken into account in order to capture both location and size of shallow landslides (consistent with field observations). These results suggest that this modeling approach could allow us to use observed landslide locations and geometries to infer the dominant hydrologic triggering mechanisms. Furthermore, as the spatial and temporal resolution of precipitation forecasting improves, this model will enable us to more accurately predict both location and size of shallow landslides.

75 FR 76352 - Fisheries of the Exclusive Economic Zone Off Alaska; Gulf of Alaska; Proposed 2011 and 2012...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-12-08

... for 2011 and 2012 that are equal to proposed ABCs for pollock, deep-water flatfish, rex sole... certain species: Pacific cod, flathead sole, shallow-water flatfish, arrowtooth flounder, and other... that the ABC is not exceeded. The flathead sole, shallow-water flatfish, and arrowtooth flounder TACs...

77 FR 15193 - Fisheries of the Exclusive Economic Zone Off Alaska; Gulf of Alaska; Final 2012 and 2013 Harvest...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-03-14

..., sablefish, deep-water flatfish, rex sole, Pacific ocean perch, northern rockfish, shortraker rockfish... cod, shallow-water flatfish, arrowtooth flounder, flathead sole, ``other rockfish'' in the Eastern GOA...) guideline harvest levels (GHLs) for Pacific cod so that the ABC is not exceeded. The shallow-water flatfish...

Biostratigraphy of a Middle Miocene-Pliocene sequence from Cumarebo area, Falcon State, northwestern Venezuela

DOE Office of Scientific and Technical Information (OSTI.GOV)

Giffuni, G.

1991-03-01

The southern Caribbean region offers little in the way of continuous sequences for the late Neogene. An upward facies shallowing trend unfavorable for planktonic foraminifers and erosional truncation seems to be almost a rule for such sediments. A fairly complete sedimentary sequence mainly represented by clays, silts, and carbonate rocks from the Cumarebo region, Falcon State, northwestern Venezuela, was chosen to study the biostratigraphy of the late Neogene using foraminifers. More than one hundred surface samples were analyzed throughout. The study of foraminiferal fossil assemblages and other microfossils was also used to define paleoenvironments of deposition. Four formations are involvedmore » in this work. From base to top they are the Socorro, Caujarao, El Veral, and Tucupido. From the study of planktonic foraminifers, six biostratigraphic zones were recognized: Globorotalia mayeri Zone, Globorotalia menardii Zone, Globorotalia acostaensis Zone, Globorotalia humerosa Zone, Globorotalia margaritae Zone, and Globorotalia miocenica Zone. These zones indicate that the age of the sequence ranks from late middle Miocene to middle Pliocene. Generally speaking, with some variations, the paleoenvironments of the sequence show a shallowing trend from marine upper-middle bathyal to middle neritic. These results make an important contribution to the stratigraphy and geologic history of the Cumarebo area, which is related to the Agua Salada basin, and may help clarify the paleogeography and paleotectonic evolution of this region for petroleum exploration.« less

Organelle sedimentation in gravitropic roots of Limnobium is restricted to the elongation zone

NASA Technical Reports Server (NTRS)

Sack, F. D.; Kim, D.; Stein, B.

1994-01-01

Roots of the aquatic angiosperm Limnobium spongia (Bosc) Steud. were evaluated by light and electron microscopy to determine the distribution of organelle sedimentation towards gravity. Roots of Limnobium are strongly gravitropic. The rootcap consists of only two layers of cells. Although small amyloplasts are present in the central cap cells, no sedimentation of any organelle, including amyloplasts, was found. In contrast, both amyloplasts and nuclei sediment consistently and completely in cells of the elongation zone. Sedimentation occurs in one cell layer of the cortex just outside the endodermis. Sedimentation of both amyloplasts and nuclei begins in cells that are in their initial stages of elongation and persists at least to the level of the root where root hairs emerge. This is the first modern report of the presence of sedimentation away from, but not in, the rootcap. It shows that sedimentation in the rootcap is not necessary for gravitropic sensing in at least one angiosperm. If amyloplast sedimentation is responsible for gravitropic sensing, then the site of sensing in Limnobium roots is the elongation zone and not the rootcap. These data do not necessarily conflict with the hypothesis that sensing occurs in the cap in other roots, since Limnobium roots are exceptional in rootcap origin and structure, as well as in the distribution of organelle sedimentation. Similarly, if nuclear sedimentation is involved in gravitropic sensing, then nuclear mass would function in addition to, not instead of, that of amyloplasts.

Simulations and field observations of root water uptake in plots with different soil water availability.

NASA Astrophysics Data System (ADS)

Cai, Gaochao; Vanderborght, Jan; Couvreur, Valentin; Javaux, Mathieu; Vereecken, Harry

2015-04-01

Root water uptake is a main process in the hydrological cycle and vital for water management in agronomy. In most models of root water uptake, the spatial and temporal soil water status and plant root distributions are required for water flow simulations. However, dynamic root growth and root distributions are not easy and time consuming to measure by normal approaches. Furthermore, root water uptake cannot be measured directly in the field. Therefore, it is necessary to incorporate monitoring data of soil water content and potential and root distributions within a modeling framework to explore the interaction between soil water availability and root water uptake. But, most models are lacking a physically based concept to describe water uptake from soil profiles with vertical variations in soil water availability. In this contribution, we present an experimental setup in which root development, soil water content and soil water potential are monitored non-invasively in two field plots with different soil texture and for three treatments with different soil water availability: natural rain, sheltered and irrigated treatment. Root development is monitored using 7-m long horizontally installed minirhizotubes at six depths with three replicates per treatment. The monitoring data are interpreted using a model that is a one-dimensional upscaled version of root water uptake model that describes flow in the coupled soil-root architecture considering water potential gradients in the system and hydraulic conductances of the soil and root system (Couvreur et al., 2012). This model approach links the total root water uptake to an effective soil water potential in the root zone. The local root water uptake is a function of the difference between the local soil water potential and effective root zone water potential so that compensatory uptake in heterogeneous soil water potential profiles is simulated. The root system conductance is derived from inverse modelling using measurements of soil water potentials, water contents, and root distributions. The results showed that this modelling approach reproduced soil water dynamics well in the different plots and treatments. Root water uptake reduced when the effective soil water potential decreased to around -70 to -100 kPa in the root zone. Couvreur, V., Vanderborght, J., and Javaux, M.: A simple three dimensional macroscopic root water uptake model based on the hydraulic architecture approach, Hydrol. Earth Syst. Sci., 16, 2957-2971, doi:10.5194/hess-16-2957-2012, 2012.

Approaches to characterizing biogeochemistry effects of groundwater and surface water interaction at the riparian interface

EPA Science Inventory

Groundwater-surface water interaction (GSI) in riparian ecosystems strongly influences biological activity that controls nutrient flux and processes. Shallow groundwater in riparian zones is a hot spot for nitrogen removal processes, a storage zone for solutes, and a target for ...

Tracer transport in soils and shallow groundwater: model abstraction with modern tools

USDA-ARS?s Scientific Manuscript database

Vadose zone controls contaminant transport from the surface to groundwater, and modeling transport in vadose zone has become a burgeoning field. Exceedingly complex models of subsurface contaminant transport are often inefficient. Model abstraction is the methodology for reducing the complexity of a...

CZAEM USER'S GUIDE: MODELING CAPTURE ZONES OF GROUND-WATER WELLS USING ANALYTIC ELEMENTS

EPA Science Inventory

The computer program CZAEM is designed for elementary capture zone analysis, and is based on the analytic element method. CZAEM is applicable to confined and/or unconfined low in shallow aquifers; the Dupuit-Forchheimer assumption is adopted. CZAEM supports the following analyt...

Multi-scale streambed topographic and discharge effects on hyporheic at the stream network scale in confined streams

Treesearch

Alessandra Marzadri; Daniele Tonina; James A. McKean; Matthew G. Tiedemann; Rohan M. Benjankar

2014-01-01

The hyporheic zone is the volume of the streambed sediment mostly saturated with stream water. It is the transitional zone between stream and shallow-ground waters and an important ecotone for benthic species, including macro-invertebrates, microorganisms, and some fish species that dwell in the hyporheic zone for parts of their lives. Most hyporheic analyses are...

Use of small scale electrical resistivity tomography to identify soil-root interactions during deficit irrigation

NASA Astrophysics Data System (ADS)

Vanella, D.; Cassiani, G.; Busato, L.; Boaga, J.; Barbagallo, S.; Binley, A.; Consoli, S.

2018-01-01

Plant roots activity affect the exchanges of mass and energy between the soil and atmosphere. However, it is challenging to monitor the activity of the root-zone because roots are not visible from the soil surface, and root systems undergo spatial and temporal variations in response to internal and external conditions. Therefore, measurements of the activity of root systems are interesting to ecohydrologists in general, and are especially important for specific applications, such as irrigation water management. This study demonstrates the use of small scale three-dimensional (3-D) electrical resistivity tomography (ERT) to monitor the root-zone of orange trees irrigated by two different regimes: (i) full rate, in which 100% of the crop evapotranspiration (ETc) is provided; and (ii) partial root-zone drying (PRD), in which 50% of ETc is supplied to alternate sides of the tree. We performed time-lapse 3-D ERT measurements on these trees from 5 June to 24 September 2015, and compared the long-term and short-term changes before, during, and after irrigation events. Given the small changes in soil temperature and pore water electrical conductivity, we interpreted changes of soil electrical resistivity from 3-D ERT data as proxies for changes in soil water content. The ERT results are consistent with measurements of transpiration flux and soil temperature. The changes in electrical resistivity obtained from ERT measurements in this case study indicate that root water uptake (RWU) processes occur at the 0.1 m scale, and highlight the impact of different irrigation schemes.

Effect of water table fluctuations on phreatophytic root distribution.

PubMed

Tron, Stefania; Laio, Francesco; Ridolfi, Luca

2014-11-07

The vertical root distribution of riparian vegetation plays a relevant role in soil water balance, in the partition of water fluxes into evaporation and transpiration, in the biogeochemistry of hyporheic corridors, in river morphodynamics evolution, and in bioengineering applications. The aim of this work is to assess the effect of the stochastic variability of the river level on the root distribution of phreatophytic plants. A function describing the vertical root profile has been analytically obtained by coupling a white shot noise representation of the river level variability to a description of the dynamics of root growth and decay. The root profile depends on easily determined parameters, linked to stream dynamics, vegetation and soil characteristics. The riparian vegetation of a river characterized by a high variability turns out to have a rooting system spread over larger depths, but with shallower mean root depths. In contrast, a lower river variability determines root profiles with higher mean root depths. Copyright © 2014 Elsevier Ltd. All rights reserved.

Mantle transition zone structure beneath the Canadian Shield

NASA Astrophysics Data System (ADS)

Thompson, D. A.; Helffrich, G. R.; Bastow, I. D.; Kendall, J. M.; Wookey, J.; Eaton, D. W.; Snyder, D. B.

2010-12-01

The Canadian Shield is underlain by one of the deepest and most laterally extensive continental roots on the planet. Seismological constraints on the mantle structure beneath the region are presently lacking due to the paucity of stations in this remote area. Presented here is a receiver function study on transition zone structure using data from recently deployed seismic networks from the Hudson Bay region. High resolution images based on high signal-to-noise ratio data show clear arrivals from the 410 km and 660 km discontinuities, revealing remarkably little variation in transition zone structure. Transition zone thickness is close to the global average (averaging 245 km across the study area), and any deviations in Pds arrival time from reference Earth models can be readily explained by upper-mantle velocity structure. The 520 km discontinuity is not a ubiquitous feature, and is only weakly observed in localised areas. These results imply that the Laurentian root is likely confined to the upper-mantle and if any mantle downwelling exists, possibly explaining the existence of Hudson Bay, it is also confined to the upper 400 km. Any thermal perturbations at transition zone depths associated with the existence of the root, whether they be cold downwellings or elevated temperatures due to the insulating effect of the root, are thus either non-existent or below the resolution of the study.

Modelling root reinforcement in shallow forest soils

USGS Publications Warehouse

Skaugset, Arne E.

1997-01-01

A hypothesis used to explain the relationship between timber harvesting and landslides is that tree roots add mechanical support to soil, thus increasing soil strength. Upon harvest, the tree roots decay which reduces soil strength and increases the risk of management -induced landslides. The technical literature does not adequately support this hypothesis. Soil strength values attributed to root reinforcement that are in the technical literature are such that forested sites can't fail and all high risk, harvested sites must fail. Both unstable forested sites and stable harvested sites exist, in abundance, in the real world thus, the literature does not adequately describe the real world. An analytical model was developed to calculate soil strength increase due to root reinforcement. Conceptually, the model is composed of a reinforcing element with high tensile strength, i.e. a conifer root, embedded in a material with little tensile strength, i.e. a soil. As the soil fails and deforms, the reinforcing element also deforms and stretches. The lateral deformation of the reinforcing element is treated analytically as a laterally loaded pile in a flexible foundation and the axial deformation is treated as an axially loaded pile. The governing differential equations are solved using finite-difference approximation techniques. The root reinforcement model was tested by comparing the final shape of steel and aluminum rods, parachute cord, wooden dowels, and pine roots in direct shear with predicted shapes from the output of the root reinforcement model. The comparisons were generally satisfactory, were best for parachute cord and wooden dowels, and were poorest for steel and aluminum rods. A parameter study was performed on the root reinforcement model which showed reinforced soil strength increased with increasing root diameter and soil depth. Output from the root reinforcement model showed a strain incompatibility between large and small diameter roots. The peak increase in soil strength attributed to roots was controlled by the small (<4mm) diameter root fraction. These results were used to calculate the effect of timber harvesting on a small, approximately 7.6 m3 (10 yd3), hypothetical landslide in a shallow, cohesionless, forest soil. The root reinforcement model predicted a post-harvest reduction in soil strength of 14 and 19 percent for a soil with and without 5 kPa (105 lbs/ft2) of cohesion, respectively.

Morphometric analysis of the working zone for endoscopic lumbar discectomy.

PubMed

Min, Jun-Hong; Kang, Shin-Hyuk; Lee, Jang-Bo; Cho, Tai-Hyoung; Suh, Jung-Keun; Rhyu, Im-Joo

2005-04-01

Our study's purpose was to analyze the working zone for the current practice of endoscopic discectomy at the lateral exit zone of the intervertebral foramen (IVF) and to define a safe point for clinical practice. One hundred eighty-six nerve roots of the lumbar IVFs of cadaveric spines were studied. Upon lateral inspection, we measured the distance from the nerve root to the most dorsolateral margin of the disc and to the lateral edge of the superior articular process of the vertebra below at the plane of the superior endplate of the vertebra below. The angle between the root and the plane of the disc was also measured. The results showed that the mean distance from the nerve root to the most dorsolateral margin of the disc was 3.4 +/- 2.7 mm (range 0.0-10.8 mm), the mean distance from the nerve root to the lateral edge of the superior articular process of the vertebra below was 11.6 +/- 4.6 mm (range 4.1-24.3 mm), and the mean angle between the nerve root and the plane of the disc was 79.1 degrees +/- 7.6 degrees (range 56.0-90.0 degrees ). The values of the base of the working zone have a wide distribution. Blind puncture of annulus by the working cannula or obturator may be dangerous. The safer procedure would be the direct viewing of the annulus by endoscopy before annulotomy; the working cannula should be inserted into the foramen as close as possible to the facet joint.

Impact of axial root growth angles on nitrogen acquisition in maize depends on environmental conditions.

PubMed

Dathe, A; Postma, J A; Postma-Blaauw, M B; Lynch, J P

2016-09-01

Crops with reduced requirement for nitrogen (N) fertilizer would have substantial benefits in developed nations, while improving food security in developing nations. This study employs the functional structural plant model SimRoot to test the hypothesis that variation in the growth angles of axial roots of maize (Zea mays L.) is an important determinant of N capture. Six phenotypes contrasting in axial root growth angles were modelled for 42 d at seven soil nitrate levels from 10 to 250 kg ha(-1) in a sand and a silt loam, and five precipitation regimes ranging from 0·5× to 1·5× of an ambient rainfall pattern. Model results were compared with soil N measurements of field sites with silt loam and loamy sand textures. For optimal nitrate uptake, root foraging must coincide with nitrate availability in the soil profile, which depends on soil type and precipitation regime. The benefit of specific root architectures for efficient N uptake increases with decreasing soil N content, while the effect of soil type increases with increasing soil N level. Extreme root architectures are beneficial under extreme environmental conditions. Extremely shallow root systems perform well under reduced precipitation, but perform poorly with ambient and greater precipitation. Dimorphic phenotypes with normal or shallow seminal and very steep nodal roots performed well in all scenarios, and consistently outperformed the steep phenotypes. Nitrate uptake increased under reduced leaching conditions in the silt loam and with low precipitation. Results support the hypothesis that root growth angles are primary determinants of N acquisition in maize. With decreasing soil N status, optimal angles resulted in 15-50 % greater N acquisition over 42 d. Optimal root phenotypes for N capture varied with soil and precipitation regimes, suggesting that genetic selection for root phenotypes could be tailored to specific environments. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Granite emplacement at the termination of a major Variscan transcurrent shear zone: The late collisional Viseu batholith

NASA Astrophysics Data System (ADS)

Valle Aguado, B.; Azevedo, M. R.; Nolan, J.; Medina, J.; Costa, M. M.; Corfu, F.; Martínez Catalán, J. R.

2017-05-01

A major event of plutonic activity occurred all across the Central Iberian Zone of the Iberian Variscan Belt at the end of Late Paleozoic Variscan collisional tectonism. The present study focuses on the western sector of the Viseu late-post-tectonic batholith (central Portugal), a large composite intrusion comprising three main plutonic units: (a) small bodies of mafic to intermediate composition preferentially concentrated along the northern border, (b) a wide ring of coarse porphyritic biotite monzogranite (Cota-Viseu granite) and (c) a more evolved medium porphyritic, biotite-muscovite monzogranite occupying the central part of the intrusion (Alcafache granite). The compositional zonation pattern of the whole batholith and the complex mixing/mingling relationships between the voluminous Cota-Viseu porphyritic granite and the mafic/intermediate rocks suggest that these melts were withdrawn from a lower crustal source region undergoing partial melting, invasion by mantle-derived mafic magmas, mixing and fractional crystallization. New CA-ID-TIMS U-Pb zircon ages indicate that pluton assembly via multipulse injection of successive magma batches took place between 299.4 ± 0.4 Ma and 296.0 ± 0.6 Ma. A detailed anisotropy of magnetic susceptibility (AMS) survey suggests that pluton emplacement occurred at the extensional termination of a regional-scale, ENE-WSW trending, sinistral D3 shear zone - the Juzbado-Penalva Shear Zone (JPSZ). A dilational opening model involving the development of "en-échelon" tensional gashes at the extensional termination of the fault, followed by progressive opening and widening of north-south trending fractures, provided the space into which the successive magma batches arriving from below were emplaced. Vertical inflation was accommodated by depression of the pluton floor. The proposed model is consistent with the asymmetric wedge-shaped geometry of the intrusion (steep root zone on the northern side, discordant subvertical walls and a shallowing pluton floor towards the south).

Reviews and syntheses: on the roles trees play in building and plumbing the critical zone

NASA Astrophysics Data System (ADS)

Brantley, Susan L.; Eissenstat, David M.; Marshall, Jill A.; Godsey, Sarah E.; Balogh-Brunstad, Zsuzsanna; Karwan, Diana L.; Papuga, Shirley A.; Roering, Joshua; Dawson, Todd E.; Evaristo, Jaivime; Chadwick, Oliver; McDonnell, Jeffrey J.; Weathers, Kathleen C.

2017-11-01

Trees, the most successful biological power plants on earth, build and plumb the critical zone (CZ) in ways that we do not yet understand. To encourage exploration of the character and implications of interactions between trees and soil in the CZ, we propose nine hypotheses that can be tested at diverse settings. The hypotheses are roughly divided into those about the architecture (building) and those about the water (plumbing) in the CZ, but the two functions are intertwined. Depending upon one's disciplinary background, many of the nine hypotheses listed below may appear obviously true or obviously false. (1) Tree roots can only physically penetrate and biogeochemically comminute the immobile substrate underlying mobile soil where that underlying substrate is fractured or pre-weathered. (2) In settings where the thickness of weathered material, H, is large, trees primarily shape the CZ through biogeochemical reactions within the rooting zone. (3) In forested uplands, the thickness of mobile soil, h, can evolve toward a steady state because of feedbacks related to root disruption and tree throw. (4) In settings where h ≪ H and the rates of uplift and erosion are low, the uptake of phosphorus into trees is buffered by the fine-grained fraction of the soil, and the ultimate source of this phosphorus is dust. (5) In settings of limited water availability, trees maintain the highest length density of functional roots at depths where water can be extracted over most of the growing season with the least amount of energy expenditure. (6) Trees grow the majority of their roots in the zone where the most growth-limiting resource is abundant, but they also grow roots at other depths to forage for other resources and to hydraulically redistribute those resources to depths where they can be taken up more efficiently. (7) Trees rely on matrix water in the unsaturated zone that at times may have an isotopic composition distinct from the gravity-drained water that transits from the hillslope to groundwater and streamflow. (8) Mycorrhizal fungi can use matrix water directly, but trees can only use this water by accessing it indirectly through the fungi. (9) Even trees growing well above the valley floor of a catchment can directly affect stream chemistry where changes in permeability near the rooting zone promote intermittent zones of water saturation and downslope flow of water to the stream. By testing these nine hypotheses, we will generate important new cross-disciplinary insights that advance CZ science.

Reviews and syntheses: on the roles trees play in building and plumbing the critical zone

DOE PAGES

Brantley, Susan L.; Eissenstat, David M.; Marshall, Jill A.; ...

2017-11-17

Trees, the most successful biological power plants on earth, build and plumb the critical zone (CZ) in ways that we do not yet understand. To encourage exploration of the character and implications of interactions between trees and soil in the CZ, we propose nine hypotheses that can be tested at diverse settings. The hypotheses are roughly divided into those about the architecture (building) and those about the water (plumbing) in the CZ, but the two functions are intertwined. Depending upon one's disciplinary background, many of the nine hypotheses listed below may appear obviously true or obviously false. (1) Tree roots can onlymore » physically penetrate and biogeochemically comminute the immobile substrate underlying mobile soil where that underlying substrate is fractured or pre-weathered. (2) In settings where the thickness of weathered material, H, is large, trees primarily shape the CZ through biogeochemical reactions within the rooting zone. (3) In forested uplands, the thickness of mobile soil, h, can evolve toward a steady state because of feedbacks related to root disruption and tree throw. (4) In settings where h \\11 H and the rates of uplift and erosion are low, the uptake of phosphorus into trees is buffered by the fine-grained fraction of the soil, and the ultimate source of this phosphorus is dust. (5) In settings of limited water availability, trees maintain the highest length density of functional roots at depths where water can be extracted over most of the growing season with the least amount of energy expenditure. (6) Trees grow the majority of their roots in the zone where the most growth-limiting resource is abundant, but they also grow roots at other depths to forage for other resources and to hydraulically redistribute those resources to depths where they can be taken up more efficiently. (7) Trees rely on matrix water in the unsaturated zone that at times may have an isotopic composition distinct from the gravity-drained water that transits from the hillslope to groundwater and streamflow. (8) Mycorrhizal fungi can use matrix water directly, but trees can only use this water by accessing it indirectly through the fungi. (9) Even trees growing well above the valley floor of a catchment can directly affect stream chemistry where changes in permeability near the rooting zone promote intermittent zones of water saturation and downslope flow of water to the stream. By testing these nine hypotheses, we will generate important new cross-disciplinary insights that advance CZ science.« less

Reviews and syntheses: on the roles trees play in building and plumbing the critical zone

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brantley, Susan L.; Eissenstat, David M.; Marshall, Jill A.

Trees, the most successful biological power plants on earth, build and plumb the critical zone (CZ) in ways that we do not yet understand. To encourage exploration of the character and implications of interactions between trees and soil in the CZ, we propose nine hypotheses that can be tested at diverse settings. The hypotheses are roughly divided into those about the architecture (building) and those about the water (plumbing) in the CZ, but the two functions are intertwined. Depending upon one's disciplinary background, many of the nine hypotheses listed below may appear obviously true or obviously false. (1) Tree roots can onlymore » physically penetrate and biogeochemically comminute the immobile substrate underlying mobile soil where that underlying substrate is fractured or pre-weathered. (2) In settings where the thickness of weathered material, H, is large, trees primarily shape the CZ through biogeochemical reactions within the rooting zone. (3) In forested uplands, the thickness of mobile soil, h, can evolve toward a steady state because of feedbacks related to root disruption and tree throw. (4) In settings where h \\11 H and the rates of uplift and erosion are low, the uptake of phosphorus into trees is buffered by the fine-grained fraction of the soil, and the ultimate source of this phosphorus is dust. (5) In settings of limited water availability, trees maintain the highest length density of functional roots at depths where water can be extracted over most of the growing season with the least amount of energy expenditure. (6) Trees grow the majority of their roots in the zone where the most growth-limiting resource is abundant, but they also grow roots at other depths to forage for other resources and to hydraulically redistribute those resources to depths where they can be taken up more efficiently. (7) Trees rely on matrix water in the unsaturated zone that at times may have an isotopic composition distinct from the gravity-drained water that transits from the hillslope to groundwater and streamflow. (8) Mycorrhizal fungi can use matrix water directly, but trees can only use this water by accessing it indirectly through the fungi. (9) Even trees growing well above the valley floor of a catchment can directly affect stream chemistry where changes in permeability near the rooting zone promote intermittent zones of water saturation and downslope flow of water to the stream. By testing these nine hypotheses, we will generate important new cross-disciplinary insights that advance CZ science.« less

Use of CT imaging to examine the coarse roots, rhizomes, and peat associated with creek bank Spartina alterniflora in fertilized and control creeks in Plum Island (MA)

EPA Science Inventory

We used computer-aided tomography (CT) to quantify the wet mass, abundance, and diameter of coarse roots and rhizomes as well as the wet mass and particle density of marsh peat in 7-year fertilized and control creeks in Plum Island (MA). In shallow soils (0 – 10 cm) and at dep...

Reliance on shallow soil water in a mixed-hardwood forest in central Pennsylvania

Treesearch

Katie P. Gaines; Jane W. Stanley; Frederick C. Meinzer; Katherine A. McCulloh; David R. Woodruff; Weile Chen; Thomas S. Adams; Henry Lin; David M. Eissenstat; Nathan Phillips

2015-01-01

We investigated depth of water uptake of trees on shale-derived soils in order to assess the importance of roots over a meter deep as a driver of water use in a central Pennsylvania catchment. This information is not only needed to improve basic understanding of water use in these forests but also to improve descriptions of root function at depth in hydrologic process...

Assessing controls on perched saturated zones beneath the Idaho Nuclear Technology and Engineering Center, Idaho

USGS Publications Warehouse

Mirus, Benjamin B.; Perkins, Kim S.; Nimmo, John R.

2011-01-01

Waste byproducts associated with operations at the Idaho Nuclear Technology and Engineering Center (INTEC) have the potential to contaminate the eastern Snake River Plain (ESRP) aquifer. Recharge to the ESRP aquifer is controlled largely by the alternating stratigraphy of fractured volcanic rocks and sedimentary interbeds within the overlying vadose zone and by the availability of water at the surface. Beneath the INTEC facilities, localized zones of saturation perched on the sedimentary interbeds are of particular concern because they may facilitate accelerated transport of contaminants. The sources and timing of natural and anthropogenic recharge to the perched zones are poorly understood. Simple approaches for quantitative characterization of this complex, variably saturated flow system are needed to assess potential scenarios for contaminant transport under alternative remediation strategies. During 2009-2011, the U.S. Geological Survey (USGS), in cooperation with the U.S. Department of Energy, employed data analysis and numerical simulations with a recently developed model of preferential flow to evaluate the sources and quantity of recharge to the perched zones. Piezometer, tensiometer, temperature, precipitation, and stream-discharge data were analyzed, with particular focus on the possibility of contributions to the perched zones from snowmelt and flow in the neighboring Big Lost River (BLR). Analysis of the timing and magnitude of subsurface dynamics indicate that streamflow provides local recharge to the shallow, intermediate, and deep perched saturated zones within 150 m of the BLR; at greater distances from the BLR the influence of streamflow on recharge is unclear. Perched water-level dynamics in most wells analyzed are consistent with findings from previous geochemical analyses, which suggest that a combination of annual snowmelt and anthropogenic sources (for example, leaky pipes and drainage ditches) contribute to recharge of shallow and intermediate perched zones throughout much of INTEC. The source-responsive fluxes model was parameterized to simulate recharge via preferential flow associated with intermittent episodes of streamflow in the BLR. The simulations correspond reasonably well to the observed hydrologic response within the shallow perched zone. Good model performance indicates that source-responsive flow through a limited number of connected fractures contributes substantially to the perched-zone dynamics. The agreement between simulated and observed perched-zone dynamics suggest that the source-responsive fluxes model can provide a valuable tool for quantifying rapid preferential flow processes that may result from different land management scenarios.

Reductive dechlorination of chlorinated ethenes under oxidation-reduction conditions and potentiometric surfaces in two trichloroethene-contaminated zones at the Double Eagle and Fourth Street Superfund sites in Oklahoma City, Oklahoma

USGS Publications Warehouse

Braun, Christopher L.

2004-01-01

The Double Eagle Refining Superfund site and the Fourth Street Abandoned Refinery Superfund site are in northeast Oklahoma City, Oklahoma, adjacent to one another. The Double Eagle facility became a Superfund site on the basis of contamination from lead and volatile organic compounds; the Fourth Street facility on the basis of volatile organic compounds, pesticides, and acid-base neutral compounds. The study documented in this report was done to investigate whether reductive dechlorination of chlorinated ethenes under oxidation-reduction conditions is occurring in two zones of the Garber-Wellington aquifer (shallow zone 30–60 to 75 feet below land surface, deep zone 75 to 160 feet below land surface) at the sites; and to construct potentiometric surfaces of the two water-yielding zones to determine the directions of groundwater flow at the sites. The presence in some wells of intermediate products of reductive dechlorination, dichloroethene and vinyl chloride, is an indication that reductive dechlorination of trichloroethene is occurring. Dissolved oxygen concentrations (less than 0.5 milligram per liter) indicate that consumption of dissolved oxygen likely had occurred in the oxygen-reducing microbial process associated with reductive dechlorination. Concentrations of nitrate and nitrite nitrogen (generally less than 2.0 and 0.06 milligrams per liter, respectively) indicate that nitrate reduction probably is not a key process in either aquifer zone. Concentrations of ferrous iron greater than 1.00 milligram per liter in the majority of wells sampled indicate that iron reduction is probable. Concentrations of sulfide less than 0.05 milligram per liter in all wells indicate that sulfate reduction probably is not a key process in either zone. The presence of methane in ground water is an indication of strongly reducing conditions that facilitate reductive dechlorination. Methane was detected in all but one well. In the shallow zone in the eastern part of the study area, ground water flowing from the northwest and south coalesces in a potentiometric trough, then moves westward and ultimately northwestward. In the western part of the study area, ground water in the shallow zone flows northwest. In the deep zone in the eastern part of the study area, ground water generally flows northwestward; and in the western part of the study area, ground water in the deep zone generally flows northward.

Farming system context drives the value of deep wheat roots in semi-arid environments

PubMed Central

Lilley, Julianne M.; Kirkegaard, John A.

2016-01-01

The capture of subsoil water by wheat roots can make a valuable contribution to grain yield on deep soils. More extensive root systems can capture more water, but leave the soil in a drier state, potentially limiting water availability to subsequent crops. To evaluate the importance of these legacy effects, a long-term simulation analysis at eight sites in the semi-arid environment of Australia compared the yield of standard wheat cultivars with cultivars that were (i) modified to have root systems which extract more water at depth and/or (ii) sown earlier to increase the duration of the vegetative period and hence rooting depth. We compared simulations with and without annual resetting of soil water to investigate the legacy effects of drier subsoils related to modified root systems. Simulated mean yield benefits from modified root systems declined from 0.1–0.6 t ha−1 when annually reset, to 0–0.2 t ha−1 in the continuous simulation due to a legacy of drier soils (mean 0–32mm) at subsequent crop sowing. For continuous simulations, predicted yield benefits of >0.2 t ha−1 from more extensive root systems were rare (3–10% of years) at sites with shallow soils (<1.0 m), but occurred in 14–44% of years at sites with deeper soils (1.6–2.5 m). Earlier sowing had a larger impact than modified root systems on water uptake (14–31 vs 2–17mm) and mean yield increase (up to 0.7 vs 0–0.2 t ha−1) and the benefits occurred on deep and shallow soils and in more years (9–79 vs 3–44%). Increasing the proportion of crops in the sequence which dry the subsoil extensively has implications for the farming system productivity, and the crop sequence must be managed tactically to optimize overall system benefits. PMID:26976814

Farming system context drives the value of deep wheat roots in semi-arid environments.

PubMed

Lilley, Julianne M; Kirkegaard, John A

2016-06-01

The capture of subsoil water by wheat roots can make a valuable contribution to grain yield on deep soils. More extensive root systems can capture more water, but leave the soil in a drier state, potentially limiting water availability to subsequent crops. To evaluate the importance of these legacy effects, a long-term simulation analysis at eight sites in the semi-arid environment of Australia compared the yield of standard wheat cultivars with cultivars that were (i) modified to have root systems which extract more water at depth and/or (ii) sown earlier to increase the duration of the vegetative period and hence rooting depth. We compared simulations with and without annual resetting of soil water to investigate the legacy effects of drier subsoils related to modified root systems. Simulated mean yield benefits from modified root systems declined from 0.1-0.6 t ha(-1) when annually reset, to 0-0.2 t ha(-1) in the continuous simulation due to a legacy of drier soils (mean 0-32mm) at subsequent crop sowing. For continuous simulations, predicted yield benefits of >0.2 t ha(-1) from more extensive root systems were rare (3-10% of years) at sites with shallow soils (<1.0 m), but occurred in 14-44% of years at sites with deeper soils (1.6-2.5 m). Earlier sowing had a larger impact than modified root systems on water uptake (14-31 vs 2-17mm) and mean yield increase (up to 0.7 vs 0-0.2 t ha(-1)) and the benefits occurred on deep and shallow soils and in more years (9-79 vs 3-44%). Increasing the proportion of crops in the sequence which dry the subsoil extensively has implications for the farming system productivity, and the crop sequence must be managed tactically to optimize overall system benefits. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Groundwater flow path dynamics and nitrogen transport potential in the riparian zone of an agricultural headwater catchment

USDA-ARS?s Scientific Manuscript database

Stream riparian zones are often thought of as areas that provide natural remediation for groundwater contaminants, especially agricultural nitrogen (N). While denitrification and vegetative uptake tend to be efficient N removal processes in slow moving shallow groundwater, these mechanisms decrease ...

Water flow and solute transport in floating fen root mats

NASA Astrophysics Data System (ADS)

Stofberg, Sija F.; EATM van der Zee, Sjoerd

2015-04-01

Floating fens are valuable wetlands, found in North-Western Europe, that are formed by floating root mats when old turf ponds are colonized by plants. These terrestrialization ecosystems are known for their biodiversity and the presence of rare plant species, and the root mats reveal different vegetation zones at a small scale. The vegetation zones are a result of strong gradients in abiotic conditions, including groundwater dynamics, nutrients and pH. To prevent irreversible drought effects such as land subsidence and mineralization of peat, water management involves import of water from elsewhere to maintain constant surface water levels. Imported water may have elevated levels of salinity during dry summers, and salt exposure may threaten the vegetation. To assess the risk of exposure of the rare plant species to salinity, the hydrology of such root mats must be understood. Physical properties of root mats have scarcely been investigated. We have measured soil characteristics, hydraulic conductivity, vertical root mat movement and groundwater dynamics in a floating root mat in the nature reserve Nieuwkoopse Plassen, in the Netherlands. The root mat mostly consists of roots and organic material, in which the soil has a high saturated water content, and strongly varies in its stage of decomposition. We have found a distinct negative correlation between degree of decomposition and hydraulic conductivity, similar to observations for bogs in the literature. Our results show that the relatively young, thin edge of the root mat that colonizes the surface water has a high hydraulic conductivity and floats in the surface water, resulting in very small groundwater fluctuations within the root mat. The older part of the root mat, that is connected to the deeper peat layers is hydrologically more isolated and the material has a lower conductivity. Here, the groundwater fluctuates strongly with atmospheric forcing. The zones of hydraulic properties and vegetation, appear to be very similar and likely functionally related. Our experimental field data were used for modelling water flow and solute transport in floating fens, using HYDRUS 2D. Fluctuations of surface water and root mat, as well as geometry and unsaturated zone parameters can have a major influence on groundwater fluctuations and the exchange between rain and surface water and the water in the root mats. In combination with the duration of salt pulses in surface water, and sensitivity of fen plants to salinity (Stofberg et al. 2014, submitted), risks for rare plants can be anticipated.

The paradoxical distribution of a shallow-rooted keystone species away from surface water, near the water-limited edge of its range in the Sonoran Desert: Seed-seedling conflicts

NASA Astrophysics Data System (ADS)

Drezner, Taly Dawn

2013-02-01

Species distributions reflect limiting factors, particularly near the margins of their range where density and abundance decrease as environmental factors decrease or increase to non-optimal conditions. I test whether the keystone saguaro cactus (Carnegiea gigantea), a shallow-rooted species, is indeed distributed disproportionately in areas of concentrated drainage (runnels) in a water-limited population. Carnegiea and a common nurse were sampled at a marginal site in and out of areas with concentrated surface water and chi-square analysis was used to determine the pattern of distribution. In this study I found that, surprisingly, near the hot, water-limited edge of their range, C. gigantea are found significantly less often in areas where more water would be available to them. For example, while only 20% of nurses were on interfluves, half of Carnegiea protégé were there. One possible explanation is that the subsequent redistribution of seeds by water away from preferred microsites may be important in shaping the final pattern of successful establishment. The shallow-rooted Carnegiea relies entirely on surface water for its moisture; it is thus paradoxical that the surface water so fundamentally essential to its survival throughout its life appears to hinder its establishment in precisely those sites where the greatest surface water would be available, particularly near the water-limited edge of its range.

Measurement carbon dioxide concentration does not affect root respiration of nine tree species in the field

Treesearch

Andrew J. Burton; Kurt S. Pregitzer

2002-01-01

Inhibition of respiration has been reported as a short-term response of tree roots to elevated measurement CO2 concentration ([CO2]), calling into question the validity of root respiration rates determined at CO2 concentrations that differ from the soil [CO2] in the rooting zone...

Implementing Dynamic Root Optimization in Noah-MP for Simulating Phreatophytic Root Water Uptake

NASA Astrophysics Data System (ADS)

Wang, Ping; Niu, Guo-Yue; Fang, Yuan-Hao; Wu, Run-Jian; Yu, Jing-Jie; Yuan, Guo-Fu; Pozdniakov, Sergey P.; Scott, Russell L.

2018-03-01

Widely distributed in arid and semiarid regions, phreatophytic roots extend into the saturated zone and extract water directly from groundwater. In this paper, we implemented a vegetation optimality model of root dynamics (VOM-ROOT) in the Noah land surface model with multiparameterization options (Noah-MP LSM) to model the extraction of groundwater through phreatophytic roots at a riparian site with a hyperarid climate (with precipitation of 35 mm/yr) in northwestern China. VOM-ROOT numerically describes the natural optimization of the root profile in response to changes in subsurface water conditions. The coupled Noah-MP/VOM-ROOT model substantially improves the simulation of surface energy and water fluxes, particularly during the growing season, compared to the prescribed static root profile in the default Noah-MP. In the coupled model, more roots are required to grow into the saturated zone to meet transpiration demand when the groundwater level declines over the growing season. The modeling results indicate that at the study site, the modeled annual transpiration is 472 mm, accounting for 92.3% of the total evapotranspiration. Direct root water uptake from the capillary fringe and groundwater, which is supplied by lateral groundwater flow, accounts for approximately 84% of the total transpiration. This study demonstrates the importance of implementing a dynamic root scheme in a land surface model for adequately simulating phreatophytic root water uptake and the associated latent heat flux.

Long-term tillage and crop rotation effects on residual nitrate in the crop root zone and nitrate accumulation in the intermediate vadose zone

USGS Publications Warehouse

Katupitiya, A.; Eisenhauer, D.E.; Ferguson, R.B.; Spalding, R.F.; Roeth, F.W.; Bobier, M.W.

1997-01-01

Tillage influences the physical and biological environment of soil. Rotation of crops with a legume affects the soil N status. A furrow irrigated site was investigated for long-term tillage and crop rotation effects on leaching of nitrate from the root zone and accumulation in the intermediate vadose zone (IVZ). The investigated tillage systems were disk-plant (DP), ridge-till (RT) and slot-plant (SP). These tillage treatments have been maintained on the Hastings silt loam (Udic Argiustoll) and Crete silt loam (Pachic Argiustoll) soils since 1976. Continuous corn (CC) and corn soybean (CS) rotations were the subtreatments. Since 1984, soybeans have been grown in CS plots in even calendar years. All tillage treatments received the same N rate. The N rate varied annually depending on the root zone residual N. Soybeans were not fertilized with N-fertilizer. Samples for residual nitrate in the root zone were taken in 8 of the 15 year study while the IVZ was only sampled at the end of the study. In seven of eight years, root zone residual soil nitrate-N levels were greater with DP than RT and SP. Residual nitrate-N amounts were similar in RT and SP in all years. Despite high residual nitrate-N with DP and the same N application rate, crop yields were higher in RT and SP except when DP had an extremely high root zone nitrate level. By applying the same N rates on all tillage treatments, DP may have been fertilized in excess of crop need. Higher residual nitrate-N in DP was most likely due to a combination of increased mineralization with tillage and lower yield compared to RT and SP. Because of higher nitrate availability with DP, the potential for nitrate leaching from the root zone was greater with DP as compared to the RT and SP tillage systems. Spring residual nitrate-N contents of DP were larger than RT and SP in both crop rotations. Ridge till and SP systems had greater nitrate-N with CS than CC rotations. Nitrate accumulation in IVZ at the upstream end of the field was twice as high with DP compared to RT and SP. At the downstream end, it was 2.4 and 1.6 times greater with DP than RT and SP, respectively. Nitrate concentration was greater in the IVZ of DP compared to RT and SP tillage systems. Nitrate accumulations in IVZ of RT and SP were not different. Continuous corn had slightly higher nitrate levels in IVZ than CS. The depth of nitrate penetration at the upstream end was greater than that of the downstream end. Estimated rates of nitrate movement ranged from 0.87 to 0.92 m yr-1 at the upstream end and 0.73 to 0.78 m yr-1 at the downstream end.

Rupture mechanism and seismotectonics of the Ms6.5 Ludian earthquake inferred from three-dimensional magnetotelluric imaging

NASA Astrophysics Data System (ADS)

Cai, Juntao; Chen, Xiaobin; Xu, Xiwei; Tang, Ji; Wang, Lifeng; Guo, Chunling; Han, Bing; Dong, Zeyi

2017-02-01

A three-dimensional (3-D) resistivity model around the 2014 Ms6.5 Ludian earthquake was obtained. The model shows that the aftershocks were mainly distributed in a shallow inverse L-shaped conductive angular region surrounded by resistive structures. The presences of this shallow conductive zone may be the key factor leading to the severe damage and surface rupture of the Ludian earthquake. A northwest trending local resistive belt along the Baogunao-Xiaohe fault interrupts the northeast trending conductive zone at the Zhaotong-Lianfeng fault zone in the middle crust, which may be the seismogenic structure of the main shock. Based on the 3-D electrical model, combining with GPS, thermal structure, and seismic survey results, a geodynamic model is proposed to interpret the seismotectonics, deep seismogenic background, and deformation characterized by a sinistral strike slip with a tensile component of the Ludian earthquake.

Shallow geology, seafloor texture, and physiographic zones of the Inner Continental Shelf from Nahant to northern Cape Cod Bay, Massachusetts

USGS Publications Warehouse

Pendleton, Elizabeth A.; Baldwin, Wayne E.; Barnhardt, Walter A.; Ackerman, Seth D.; Foster, David S.; Andrews, Brian D.; Schwab, William C.

2013-01-01

The Massachusetts inner continental shelf between Nahant and northern Cape Cod Bay has been profoundly affected by the occupation and retreat of glacial ice sheets and relative sea-level change during the Quaternary. Marine geologic mapping of this area is a component of a statewide cooperative effort involving the U.S. Geological Survey and the Massachusetts Office of Coastal Zone Management. Interpretation of high-resolution geophysical data (interferometric and multibeam swath bathymetry, lidar, backscatter, and seismic reflection), sediment samples, and bottom photographs was used to produce a series of maps that describe the distribution and texture of seafloor sediments, shallow geologic framework, and physiographic zones of this inner-shelf region. These data and interpretations are intended to aid efforts to inventory and manage coastal and marine resources, and provide baseline information for research focused on coastal evolution and environmental change.

Spatial Regulation of Root Growth: Placing the Plant TOR Pathway in a Developmental Perspective

PubMed Central

Barrada, Adam; Montané, Marie-Hélène; Robaglia, Christophe; Menand, Benoît

2015-01-01

Plant cells contain specialized structures, such as a cell wall and a large vacuole, which play a major role in cell growth. Roots follow an organized pattern of development, making them the organs of choice for studying the spatio-temporal regulation of cell proliferation and growth in plants. During root growth, cells originate from the initials surrounding the quiescent center, proliferate in the division zone of the meristem, and then increase in length in the elongation zone, reaching their final size and differentiation stage in the mature zone. Phytohormones, especially auxins and cytokinins, control the dynamic balance between cell division and differentiation and therefore organ size. Plant growth is also regulated by metabolites and nutrients, such as the sugars produced by photosynthesis or nitrate assimilated from the soil. Recent literature has shown that the conserved eukaryotic TOR (target of rapamycin) kinase pathway plays an important role in orchestrating plant growth. We will summarize how the regulation of cell proliferation and cell expansion by phytohormones are at the heart of root growth and then discuss recent data indicating that the TOR pathway integrates hormonal and nutritive signals to orchestrate root growth. PMID:26295391

Hydrologic Regulation of Plant Rooting Depth and Vice Versa

NASA Astrophysics Data System (ADS)

Fan, Y.; Miguez-Macho, G.

2017-12-01

How deep plant roots go and why may hold the answer to several questions regarding the co-evolution of terrestrial life and its environment. In this talk we explore how plant rooting depth responds to the hydrologic plumbing system in the soil/regolith/bedrocks, and vice versa. Through analyzing 2200 root observations of >1000 species along biotic (life form, genus) and abiotic (precipitation, soil, drainage) gradients, we found strong sensitivities of rooting depth to local soil water profiles determined by precipitation infiltration depth from the top (reflecting climate and soil), and groundwater table depth from below (reflecting topography-driven land drainage). In well-drained uplands, rooting depth follows infiltration depth; in waterlogged lowlands, roots stay shallow avoiding oxygen stress below the water table; in between, high productivity and drought can send roots many meters down to groundwater capillary fringe. We explore the global significance of this framework using an inverse model, and the implications to the coevolution of deep roots and the CZ in the Early-Mid Devonian when plants colonized the upland environments.

Root-zone acidity affects relative uptake of nitrate and ammonium from mixed nitrogen sources

NASA Technical Reports Server (NTRS)

Vessey, J. K.; Henry, L. T.; Chaillou, S.; Raper, C. D. Jr; Raper CD, J. r. (Principal Investigator)

1990-01-01

Soybean plants (Glycine max [L.] Merr. cv Ransom) were grown for 21 days on 4 sources of N (1.0 mM NO3-, 0.67 mM NO3- plus 0.33 mM NH4+, 0.33 mM NO3- plus 0.67 mM NH4+, and 1.0 mM NH4+) in hydroponic culture with the acidity of the nutrient solution controlled at pH 6.0, 5.5, 5.0, and 4.5. Dry matter and total N accumulation of the plants was not significantly affected by N-source at any of the pH levels except for decreases in these parameters in plants supplied solely with NH4+ at pH 4.5. Shoot-to-root ratios increased in plants which had an increased proportion [correction of proporiton] of NH4(+)-N in their nutrient solutions at all levels of root-zone pH. Uptake of NO3- and NH4+ was monitored daily by ion chromatography as depletion of these ions from the replenished hydroponic solutions. At all pH levels the proportion of either ion that was absorbed increased as the ratio of that ion increased in the nutrient solution. In plants which were supplied with sources of NO3- plus NH4+, NH4+ was absorbed at a ratio of 2:1 over NO3- at pH 6.0. As the pH of the root-zone declined, however, NH4+ uptake decreased and NO3- uptake increased. Thus, the NH4+ to NO3- uptake ratio declined with decreases in root-zone pH. The data indicate a negative effect of declining root-zone pH on NH4+ uptake and supports a hypothesis that the inhibition of growth of plants dependent on NH4(+)-N at low pH is due to a decline in NH4+ uptake and a consequential limitation of growth by N stress.

Auxin increases the hydrogen peroxide (H2O2) concentration in tomato (Solanum lycopersicum) root tips while inhibiting root growth

PubMed Central

Ivanchenko, Maria G.; den Os, Désirée; Monshausen, Gabriele B.; Dubrovsky, Joseph G.; Bednářová, Andrea; Krishnan, Natraj

2013-01-01

Background and Aims The hormone auxin and reactive oxygen species (ROS) regulate root elongation, but the interactions between the two pathways are not well understood. The aim of this study was to investigate how auxin interacts with ROS in regulating root elongation in tomato, Solanum lycopersicum. Methods Wild-type and auxin-resistant mutant, diageotropica (dgt), of tomato (S. lycopersicum ‘Ailsa Craig’) were characterized in terms of root apical meristem and elongation zone histology, expression of the cell-cycle marker gene Sl-CycB1;1, accumulation of ROS, response to auxin and hydrogen peroxide (H2O2), and expression of ROS-related mRNAs. Key Results The dgt mutant exhibited histological defects in the root apical meristem and elongation zone and displayed a constitutively increased level of hydrogen peroxide (H2O2) in the root tip, part of which was detected in the apoplast. Treatments of wild-type with auxin increased the H2O2 concentration in the root tip in a dose-dependent manner. Auxin and H2O2 elicited similar inhibition of cell elongation while bringing forth differential responses in terms of meristem length and number of cells in the elongation zone. Auxin treatments affected the expression of mRNAs of ROS-scavenging enzymes and less significantly mRNAs related to antioxidant level. The dgt mutation resulted in resistance to both auxin and H2O2 and affected profoundly the expression of mRNAs related to antioxidant level. Conclusions The results indicate that auxin regulates the level of H2O2 in the root tip, so increasing the auxin level triggers accumulation of H2O2 leading to inhibition of root cell elongation and root growth. The dgt mutation affects this pathway by reducing the auxin responsiveness of tissues and by disrupting the H2O2 homeostasis in the root tip. PMID:23965615

Partial Root-Zone Drying of Olive (Olea europaea var. 'Chetoui') Induces Reduced Yield under Field Conditions

PubMed Central

Dbara, Soumaya; Haworth, Matthew; Emiliani, Giovani; Ben Mimoun, Mehdi; Gómez-Cadenas, Aurelio; Centritto, Mauro

2016-01-01

The productivity of olive trees in arid and semi-arid environments is closely linked to irrigation. It is necessary to improve the efficiency of irrigation techniques to optimise the amount of olive fruit produced in relation to the volume of water used. Partial root-zone drying (PRD) is a water saving irrigation technique that theoretically allows the production of a root-to-shoot signal that modifies the physiology of the above-ground parts of the plant; specifically reducing stomatal conductance (gs) and improving water use efficiency (WUE). Partial root-zone drying has been successfully applied under field conditions to woody and non-woody crops; yet the few previous trials with olive trees have produced contrasting results. Thirty year-old olive trees (Olea europaea ‘var. Chetoui’) in a Tunisian grove were exposed to four treatments from May to October for three-years: ‘control’ plants received 100% of the potential evapotranspirative demand (ETc) applied to the whole root-zone; ‘PRD100’ were supplied with an identical volume of water to the control plants alternated between halves of the root-zone every ten-days; ‘PRD50’ were given 50% of ETc to half of the root-system, and; ‘rain-fed’ plants received no supplementary irrigation. Allowing part of the root-zone to dry resulted in reduced vegetative growth and lower yield: PRD100 decreased yield by ~47% during productive years. During the less productive years of the alternate bearing cycle, irrigation had no effect on yield; this suggests that withholding of water during ‘off-years’ may enhance the effectiveness of irrigation over a two-year cycle. The amount and quality of oil within the olive fruit was unaffected by the irrigation treatment. Photosynthesis declined in the PRD50 and rain-fed trees due to greater diffusive limitations and reduced biochemical uptake of CO2. Stomatal conductance and the foliar concentration of abscisic acid (ABA) were not altered by PRD100 irrigation, which may indicate the absence of a hormonal root-to-shoot signal. Rain-fed and PRD50 treatments induced increased stem water potential and increased foliar concentrations of ABA, proline and soluble sugars. The stomata of the olive trees were relatively insensitive to super-ambient increases in [CO2] and higher [ABA]. These characteristics of ‘hydro-passive’ stomatal behaviour indicate that the ‘Chetoui’ variety of olive tree used in this study lacks the physiological responses required for the successful exploitation of PRD techniques to increase yield and water productivity. Alternative irrigation techniques such as partial deficit irrigation may be more suitable for ‘Chetoui’ olive production. PMID:27315081

76 FR 79620 - Fisheries of the Exclusive Economic Zone Off Alaska; Gulf of Alaska; Proposed 2012 and 2013...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-12-22

.... Apportionment of trawl PSC limits between the deep-water and shallow-water fisheries, limits for non-exempt... limit from the third season deep-water species fishery allowance for the GOA trawl fisheries to Rockfish... specifications. The draft 2011 SAFE reports indicate that the biomass trend for shallow-water flatfish, deep...

Hydrological modelling of the Mara River Basin, Kenya: Application of the Normalised Difference Infrared Index (NDII)

NASA Astrophysics Data System (ADS)

Hulsman, Petra; Savenije, Hubert; Bogaard, Thom

2017-04-01

In hydrology and water resources management, precipitation and discharge are the main time series for hydrological modelling. However, in African river catchments, the quantity and quality of the available precipitation stations and discharge measurements are unfortunately often inadequate for reliable hydrological modelling. To cope with these uncertainties, this study proposes to calibrate on water levels and to constrain the model using the Normalised Difference Infrared Index (NDII) as a proxy for root zone moisture stress. With the NDII, the leaf water content can be monitored. Previous studies related the NDII to the equivalent water thickness (EWT) of leaves, which is used to determine the vegetation water content (VWC). As the water content in the leaves is related to the water content in the root zone, the NDII can also be used as indicator of the soil moisture content in the root zone. In previous studies it was found that the root zone moisture content is exponentially correlated to the NDII during periods of moisture stress. In this study, the semi-distributed rainfall runoff model FLEX-Topo has been applied to the Mara River Basin. In this model seven sub-basins are distinguished and four hydrological response units with each a unique model structure based on the expected dominant flow processes. To calibrate the model, the water levels have been back-calculated from modelled discharges, using cross-section data and the Strickler formula calibrating parameter 'k•s1/2', and compared to measured water levels. In addition, the correlation between the NDII and root zone moisture content has been analysed for this river basin for each sub-catchment and hydrological response unit. Also, the application of the NDII as model constraint or for calibration has been analysed.

Differentiating transpiration from evaporation in seasonal agricultural wetlands and the link to advective fluxes in the root zone

USGS Publications Warehouse

Bachand, P.A.M.; S. Bachand,; Fleck, Jacob A.; Anderson, Frank E.; Windham-Myers, Lisamarie

2014-01-01

The current state of science and engineering related to analyzing wetlands overlooks the importance of transpiration and risks data misinterpretation. In response, we developed hydrologic and mass budgets for agricultural wetlands using electrical conductivity (EC) as a natural conservative tracer. We developed simple differential equations that quantify evaporation and transpiration rates using flowrates and tracer concentrations atwetland inflows and outflows. We used two ideal reactormodel solutions, a continuous flowstirred tank reactor (CFSTR) and a plug flow reactor (PFR), to bracket real non-ideal systems. From those models, estimated transpiration ranged from 55% (CFSTR) to 74% (PFR) of total evapotranspiration (ET) rates, consistent with published values using standard methods and direct measurements. The PFR model more appropriately represents these nonideal agricultural wetlands in which check ponds are in series. Using a fluxmodel, we also developed an equation delineating the root zone depth at which diffusive dominated fluxes transition to advective dominated fluxes. This relationship is similar to the Peclet number that identifies the dominance of advective or diffusive fluxes in surface and groundwater transport. Using diffusion coefficients for inorganic mercury (Hg) and methylmercury (MeHg) we calculated that during high ET periods typical of summer, advective fluxes dominate root zone transport except in the top millimeters below the sediment–water interface. The transition depth has diel and seasonal trends, tracking those of ET. Neglecting this pathway has profound implications: misallocating loads along different hydrologic pathways; misinterpreting seasonal and diel water quality trends; confounding Fick's First Law calculations when determining diffusion fluxes using pore water concentration data; and misinterpreting biogeochemicalmechanisms affecting dissolved constituent cycling in the root zone. In addition,our understanding of internal root zone cycling of Hg and other dissolved constituents, benthic fluxes, and biological irrigation may be greatly affected.

Interaction between shallow groundwater, saline surface water and contaminant discharge at a seasonally and tidally forced estuarine boundary

NASA Astrophysics Data System (ADS)

Westbrook, S. J.; Rayner, J. L.; Davis, G. B.; Clement, T. P.; Bjerg, P. L.; Fisher, S. J.

2005-02-01

This paper presents findings from a 2-year field investigation of a dissolved hydrocarbon groundwater plume flowing towards a tidally and seasonally forced estuarine river system in Perth, Western Australia. Samples collected from transects of multiport wells along the riverbank and into the river, enabled mapping of the fine scale (0.5 m) vertical definition of the hydrocarbon plume and its longitudinal extent. Spear probing beneath the river sediments and water table, and transient monitoring of multiport wells (electrical conductivity) was also carried out to define the zone of mixing between river water and groundwater (the hyporheic zone) and its variability. The results showed that groundwater seepage into the estuarine surface sediments occurred in a zone less than 10 m from the high tide mark, and that this distance and the hyporheic transition zone were influenced by tidal fluctuations and infiltration of river water into the sediments. The dissolved BTEXN (benzene, toluene, ethylbenzene, the xylene isomers and naphthalene) distributions indicated the behaviour of the hydrocarbon plume at the groundwater/surface water transition zone to be strongly influenced by edge-focussed discharge. Monitoring programs and risk assessment studies at similar contaminated sites should therefore focus efforts within the intertidal zone where contaminants are likely to impact the surface water and shallow sediment environments.

Predicting root zone soil moisture with soil properties and satellite near-surface moisture data across the conterminous United States

NASA Astrophysics Data System (ADS)

Baldwin, D.; Manfreda, S.; Keller, K.; Smithwick, E. A. H.

2017-03-01

Satellite-based near-surface (0-2 cm) soil moisture estimates have global coverage, but do not capture variations of soil moisture in the root zone (up to 100 cm depth) and may be biased with respect to ground-based soil moisture measurements. Here, we present an ensemble Kalman filter (EnKF) hydrologic data assimilation system that predicts bias in satellite soil moisture data to support the physically based Soil Moisture Analytical Relationship (SMAR) infiltration model, which estimates root zone soil moisture with satellite soil moisture data. The SMAR-EnKF model estimates a regional-scale bias parameter using available in situ data. The regional bias parameter is added to satellite soil moisture retrievals before their use in the SMAR model, and the bias parameter is updated continuously over time with the EnKF algorithm. In this study, the SMAR-EnKF assimilates in situ soil moisture at 43 Soil Climate Analysis Network (SCAN) monitoring locations across the conterminous U.S. Multivariate regression models are developed to estimate SMAR parameters using soil physical properties and the moderate resolution imaging spectroradiometer (MODIS) evapotranspiration data product as covariates. SMAR-EnKF root zone soil moisture predictions are in relatively close agreement with in situ observations when using optimal model parameters, with root mean square errors averaging 0.051 [cm3 cm-3] (standard error, s.e. = 0.005). The average root mean square error associated with a 20-fold cross-validation analysis with permuted SMAR parameter regression models increases moderately (0.082 [cm3 cm-3], s.e. = 0.004). The expected regional-scale satellite correction bias is negative in four out of six ecoregions studied (mean = -0.12 [-], s.e. = 0.002), excluding the Great Plains and Eastern Temperate Forests (0.053 [-], s.e. = 0.001). With its capability of estimating regional-scale satellite bias, the SMAR-EnKF system can predict root zone soil moisture over broad extents and has applications in drought predictions and other operational hydrologic modeling purposes.

Effect of tree roots on a shear zone: modeling reinforced shear stress.

Treesearch

Kazutoki Abe; Robert R. Ziemer

1991-01-01

Tree roots provide important soil reinforcement that impoves the stability of hillslopes. After trees are cut and roots begin to decay, the frequency of slope failures can increase. To more fully understand the mechanics of how tree roots reinforce soil, fine sandy soil containing pine roots was placed in a large shear box in horizontal layers and sheared across a...

Verification of radiocesium decontamination from farmlands by plants in Fukushima.

PubMed

Kobayashi, Daisuke; Okouchi, Toshiyasu; Yamagami, Mutsumi; Shinano, Takuro

2014-01-01

The purpose of this study was to verify radiocesium decontamination from Fukushima farmland by plants and to screen plants useful for phytoremediation. Thirteen species from three families (Asteraceae, Fabaceae, and Poaceae) of crops were grown in shallow and deeply cultivated fields (0-8 and 0-15 cm plowing, respectively). To change plowing depth was expected to make different contacting zone between root system and radiocesium in soil. The radioactivity values of the plants due to the radiocesium ¹³⁴Cs and ¹³⁷Cs were 22-179 and 29-225 Bq kg dry weight⁻¹, respectively. The ¹³⁴Cs and ¹³⁷Cs transfer factors for plants grown in the shallow field ranged from 0.021 to 0.12 and fro 0.019 to 0.13, respectively, with the geometric means of 0.051 and 0.057, respectively. The ¹³⁴Cs and ¹³⁷Cs transfer factors for plants grown in the deep field ranged from 0.019 to 0.13 and from 0.022 to 0.13, respectively, with the geometric means of 0.045 and 0.063, respectively. Although a reducing ratio was calculated to evaluate the decrease in radiocesium from contaminated soil during cultivation (i.e., phytoremediation ability), no plant species resulted in a remarkable decrease in radiocesium in soil among the tested crops. These results should be followed up for several years and further analyses are required to evaluate whether the phytoremediation technique is applicable to radioactively contaminated farmlands.

Nutrient cycling and Above- and Below-ground Interactions in a Runoff Agroforestry System Applied with Composted Tree Trimmings

NASA Astrophysics Data System (ADS)

Ilani, Talli; Ephrath, Jhonathan; Silberbush, Moshe; Berliner, Pedro

2014-05-01

The primary production in arid zones is limited due to shortage of water and nutrients. Conveying flood water and storing it in plots surrounded by embankments allows their cropping. The efficient exploitation of the stored water can be achieved through an agroforestry system, in which two crops are grown simultaneously: annual crops with a shallow root system and trees with a deeper root system. We posit that the long-term productivity of this system can be maintained by intercropping symbiotic N fixing shrubs with annual crops, and applying the pruned and composted shrub leaves to the soil, thus ensuring an adequate nitrogen level (a limiting factor in drylands) in the soil. To test our hypothesis we carried a two year trial in which fast-growing acacia (A. saligna) trees were the woody component and maize (Zea mays L.) the intercrop. Ten treatments were applied over two maize growth seasons to examine the below- and above-ground effects of tree pruning, compost application and interactions. The addition of compost in the first growth season led to an increase of the soil organic matter reservoir, which was the main N source for the maize during the following growth season. In the second growth season the maize yield was significantly higher in the plots to which compost was applied. Pruning the tree's canopies changed the trees spatial and temporal root development, allowing the annual crop to develop between the trees. The roots of pruned trees intercropped with maize penetrated deeper in the soil. The intercropping of maize within pruned trees and implementing compost resulted in a higher water use efficiency of the water stored in the soil when compared to the not composted and monoculture treatments. The results presented suggest that the approach used in this study can be the basis for achieving sustainable agricultural production under arid conditions.

How rice roots form their surrounding: Distinctive sub-zones of oxides, silicates and organic matter

NASA Astrophysics Data System (ADS)

Koelbl, Angelika; Mueller, Carsten; Hoeschen, Carmen; Lugmeier, Johann; Said-Pullicino, Daniel; Romani, Marco; Koegel-Knabner, Ingrid

2016-04-01

Most of the rice (Oryza sativa) worldwide is grown under flooded conditions in bunded fields (paddies). Inundation during long periods of the year leads to anoxic conditions in the soil. The rice plant is well adapted to these conditions by being able to transport oxygen via aerenchyma from the atmosphere to the roots. This plant mediated O2 transport also influences the adjacent soil. Driven by the O2 leakage into the rhizosphere, reddish ferric oxides and ferric hydroxides precipitate along the root channels. Thus, radial gradients of ferric Fe and with it co-precipitated organic substances form. Detailed investigations of element gradients on a submicron scale within the oxide coatings are still missing. Nano-scale secondary ion mass spectrometry (NanoSIMS) analyses can help to visualize and study the interplay of the various soil components at a submicron scale like, e.g., the attachment of organic material to minerals or the architecture of microstructures. The aim of the present study was to evaluate the composition and size of oxide coatings around rice roots concerning the distribution of organic matter and its spatial relation to oxides and silicates. Samples were taken from the plough pan of a paddy field close to the National Rice Research Centre, Castello d'Agogna (Pavia, Italy). Intact soil aggregates were air-dried, embedded in epoxy resin and then cut and polished in order to obtain a surface with low topography. Reflected-light microscopy was used (mm to μm scale) to visualize the aggregate architecture and to identify root channels in the embedded aggregate. In the next step, scanning electron microscopy (SEM) was applied to obtain images of high resolution and to define distinctive spots for subsequent NanoSIMS analyses. Using the Cameca NanoSIMS 50L at TU München, we simultaneously detected 12C-, 12C14N-, 28Si-, 32S-, 27Al16O- and 56Fe16O- at several areas around root channels in order to distinguish between organic material and different mineral particles (e.g. oxides, clay minerals). Beside single 40 x 40 μm sized spots, mosaics of 20 x 20 μm sized images were combined to investigate the region from the surface of the root channels into the soil matrix. The image data of all detected secondary ions was analysed using line scans and designation of regions of interest (ROI) to evaluate relative occurrences and spatial distributions. The results revealed that the oxic zone around rice roots can be subdivided in distinctive sub-zones. We identified a distinctive zone of approx. 20 μm around the root channels, where exclusively oxide-associated organic matter occurred. This zone can be clearly distinguished from a clay mineral-dominated zone. In addition, oxide-incrusted root cells revealed coexisting regions of Fe (hydr)oxides and Al-organic complexes.

Na+ extrusion from the cytosol and tissue-specific Na+ sequestration in roots confer differential salt stress tolerance between durum and bread wheat.

PubMed

Wu, Honghong; Shabala, Lana; Azzarello, Elisa; Huang, Yuqing; Pandolfi, Camilla; Su, Nana; Wu, Qi; Cai, Shengguan; Bazihizina, Nadia; Wang, Lu; Zhou, Meixue; Mancuso, Stefano; Chen, Zhonghua; Shabala, Sergey

2018-06-11

The progress in plant breeding for salinity stress tolerance is handicapped by the lack of understanding of the specificity of salt stress signalling and adaptation at the cellular and tissue levels. In this study, we used electrophysiological, fluorescence imaging, and real-time quantitative PCR tools to elucidate the essentiality of the cytosolic Na+ extrusion in functionally different root zones (elongation, meristem, and mature) in a large number of bread and durum wheat accessions. We show that the difference in the root's ability for vacuolar Na+ sequestration in the mature zone may explain differential salinity stress tolerance between salt-sensitive durum and salt-tolerant bread wheat species. Bread wheat genotypes also had on average 30% higher capacity for net Na+ efflux from the root elongation zone, providing the first direct evidence for the essentiality of the root salt exclusion trait at the cellular level. At the same time, cytosolic Na+ accumulation in the root meristem was significantly higher in bread wheat, leading to the suggestion that this tissue may harbour a putative salt sensor. This hypothesis was then tested by investigating patterns of Na+ distribution and the relative expression level of several key genes related to Na+ transport in leaves in plants with intact roots and in those in which the root meristems were removed. We show that tampering with this sensing mechanism has resulted in a salt-sensitive phenotype, largely due to compromising the plant's ability to sequester Na+ in mesophyll cell vacuoles. The implications of these findings for plant breeding for salinity stress tolerance are discussed.

Magnetic fabric in granitoid plutons emplaced during Variscan orogeny and timing of their intrusions: Eastern Variscan front

NASA Astrophysics Data System (ADS)

Hrouda, F.; Schulmann, K.; Chlupacova, M.; Aichler, J.; Mixa, P.; Pecina, V.; Zacek, V.; Kroener, A.

2003-04-01

The eastern Variscan front at the Czech and Polish border is characterised by oblique underthrusting of Neo-Proterozoic continental margin below thickened crustal root. The underthrust plate is subsequently imbricated and forms obliquely convergent crustal wedge which was further thrust over the foreland. Several granitic plutons of arc geochemical affinity are intruded during different stages of crustal thickening and exhumation. Analysis of anisotropy of magnetic susceptibility was carried out to study the relationships between host rock deformation and magma emplacement fabrics in different crustal levels and geographical positions with respect to crustal wedge and westerly orogenic root. Deep seated granodiorite sheets (Javornik intrusion 348 Ma, and Stare Mesto sill 340 Ma) are emplaced in the deepest and more internal high grade parts of the orogen along the margin of thickened crustal root. They show AMS fabrics entirely concordant with surrounding high grade gneisses and were emplaced during contractional (transpressive) regime.The Sumperk granodiorite is a more shallow intrusion emplaced in the central part of the crustal wedge. This sheet-like intrusion shows its AMS fabrics conformable to transpressional fabrics of surrounding mylonitised barovian schists and gneisses. The Zulova Pluton 330 Ma, representing the shallowest intrusion, intrudes the most external part of the crustal wedge. It shows the magnetic fabrics virtually perpendicular to compressional structures in the neighbouring areas. In addition, these fabrics are clearly concordant with large-scale detachment zone along which the Devonian meta-sedimentary cover slided to the west. The AMS fabrics of granitoids thus testify the progressive oblique convergence prograding to the east followed by collapse of external part of orogenic wedge. The AMS fabric data allow us to evaluate the mechanical role of arc magmas syntectonically emplaced during oblique convergence and finally during normal shearing perpendicular to the orogen.

Growth, allometry and shade tolerance of understory saplings of four subalpine conifers in central Japan.

PubMed

Takahashi, Koichi; Obata, Yoshiko

2014-03-01

The conifers Abies veitchii, A. mariesii, Picea jezoensis var. hondoensis, Tsuga diversifolia dominate in subalpine forests in central Japan. We expected that species differences in shade tolerance and in aboveground and belowground architecture are important for their coexistence. We examined net production and carbon allocation of understory saplings. Although the four species allocated similar amounts of biomass to roots at a given trunk height, the root-zone area of T. diversifolia was greater than that of the three other species. T. diversifolia often dominates shallow soil sites, such as ridge and rocky slopes, and, therefore, a wide spread of lateral roots would be an adaptation to such edaphic conditions. Crown width and leaf and branch mass were greatest for T. diversifolia and A. mariesii, followed in order by A. veitchii and P. jezoensis var. hondoensis. Although leaf mass of P. jezoensis var. hondoensis was lowest among the four species, species differences were not found in the net production per sapling because net production per leaf mass was greatest for P. jezoensis var. hondoensis. The leaf lifespan was longer in the order A. mariesii, T. diversifolia, P. jezoensis var. hondoensis and A. veitchii. The minimum rate of net production per leaf mass required to maintain the current sapling leaf mass (MRNP(LM)) was lowest in A. mariesii and T. diversifolia, and increased in the order of A. veitchii and P. jezoensis var. hondoensis. A. mariesii and T. diversifolia may survive in shade conditions by a lower MRNP(LM) than the two other species. Therefore, species differences in aboveground and belowground architecture and MRNPLM reflected their shade tolerance and regeneration strategies, which contribute to their coexistence.

Aluminum exclusion from root zone and maintenance of nutrient uptake are principal mechanisms of Al tolerance in Pisum sativum L.

PubMed

Kichigina, Natalia E; Puhalsky, Jan V; Shaposhnikov, Aleksander I; Azarova, Tatiana S; Makarova, Natalia M; Loskutov, Svyatoslav I; Safronova, Vera I; Tikhonovich, Igor A; Vishnyakova, Margarita A; Semenova, Elena V; Kosareva, Irina A; Belimov, Andrey A

2017-10-01

Our study aimed to evaluate intraspecific variability of pea ( Pisum sativum L.) in Al tolerance and to reveal mechanisms underlying genotypic differences in this trait. At the first stage, 106 pea genotypes were screened for Al tolerance using root re-elongation assay based on staining with eriochrome cyanine R. The root re-elongation zone varied from 0.5 mm to 14 mm and relationships between Al tolerance and provenance or phenotypic traits of genotypes were found. Tolerance index (TI), calculated as a biomass ratio of Al-treated and non-treated contrasting genotypes grown in hydroponics for 10 days, varied from 30% to 92% for roots and from 38% to 90% for shoots. TI did not correlate with root or shoot Al content, but correlated positively with increasing pH and negatively with residual Al concentration in nutrient solution in the end of experiments. Root exudation of organic acid anions (mostly acetate, citrate, lactate, pyroglutamate, pyruvate and succinate) significantly increased in several Al-treated genotypes, but did not correlate with TI. Al-treatment decreased Ca, Co, Cu, K, Mg, Mn, Mo, Ni, S and Zn contents in roots and/or shoots, whereas contents of several elements (P, B, Fe and Mo in roots and B and Fe in shoots) increased, suggesting that Al toxicity induced substantial disturbances in uptake and translocation of nutrients. Nutritional disturbances were more pronounced in Al sensitive genotypes. In conclusion, pea has a high intraspecific variability in Al tolerance and this trait is associated with provenance and phenotypic properties of plants. Transformation of Al to unavailable (insoluble) forms in the root zone and the ability to maintain nutrient uptake are considered to be important mechanisms of Al tolerance in this plant species.

Soil Moisture/ Tree Water Status Dynamics in Mid-Latitude Montane Forest, Southern Sierra Critical Zone Observatory, CA

NASA Astrophysics Data System (ADS)

Hartsough, P. C.; Malazian, A.; Meadows, M. W.; Roudneva, K.; Storch, J.; Bales, R. C.; Hopmans, J. W.

2010-12-01

As part of an effort to understand the root-water-nutrient interactions in the multi-dimensional soil/vegetation system surrounding large trees, in August 2008 we instrumented a mature white fir (Abies concolor) and the surrounding soil to better define the water balance in a single tree. In July 2010, we instrumented a second tree, a Ponderosa pine (Pinus ponderosa) in shallower soils on a drier, exposed slope. The trees are located in a mixed-conifer forest at an elevation of 2000m in the Southern Sierra Critical Zone Observatory. The deployment of more than 250 sensors to measure temperature, volumetric water content, matric potential, and snow depth surrounding the two trees complements sap-flow measurements in the trunk and stem-water-potential measurements in the canopy to capture the seasonal cycles of soil wetting and drying. We show here the results of a multi-year deployment of soil moisture sensors as critical integrators of hydrologic/ biotic interaction in a forested catchment. Sensor networks such as deployed here are a valuable tool in closing the water budget in dynamic forested catchments. While the exchange of energy, water and carbon is continuous, the pertinent fluxes are strongly heterogeneous in both space and time. Thus, the prediction of the behavior of the system across multiple scales constitutes a major challenge.

Verifiable metamodels for nitrate losses to drains and groundwater in the Corn Belt, USA

USGS Publications Warehouse

Nolan, Bernard T.; Malone, Robert W.; Gronberg, Jo Ann M.; Thorp, K.R.; Ma, Liwang

2012-01-01

Nitrate leaching in the unsaturated zone poses a risk to groundwater, whereas nitrate in tile drainage is conveyed directly to streams. We developed metamodels (MMs) consisting of artificial neural networks to simplify and upscale mechanistic fate and transport models for prediction of nitrate losses by drains and leaching in the Corn Belt, USA. The two final MMs predicted nitrate concentration and flux, respectively, in the shallow subsurface. Because each MM considered both tile drainage and leaching, they represent an integrated approach to vulnerability assessment. The MMs used readily available data comprising farm fertilizer nitrogen (N), weather data, and soil properties as inputs; therefore, they were well suited for regional extrapolation. The MMs effectively related the outputs of the underlying mechanistic model (Root Zone Water Quality Model) to the inputs (R2 = 0.986 for the nitrate concentration MM). Predicted nitrate concentration was compared with measured nitrate in 38 samples of recently recharged groundwater, yielding a Pearson’s r of 0.466 (p = 0.003). Predicted nitrate generally was higher than that measured in groundwater, possibly as a result of the time-lag for modern recharge to reach well screens, denitrification in groundwater, or interception of recharge by tile drains. In a qualitative comparison, predicted nitrate concentration also compared favorably with results from a previous regression model that predicted total N in streams.

Integrated geophysical application to investigate groundwater potentiality of the shallow Nubian aquifer at northern Kharga, West

NASA Astrophysics Data System (ADS)

Younis, Abdellatif; Soliman, Mamdouh; Moussa, Salah; Massoud, Usama; ElNabi, Sami Abd; Attia, Magdy

2016-06-01

Continuous evaluation of groundwater aquifers in the basin of Kharga Oasis is very important. Groundwater in Kharga Oasis represents the major factor for the development plans of this area as it is the sole source for water supplies required for drinking and irrigation purposes. This study is concerned by analyzing the groundwater potentiality of the shallow aquifer at the northern part of Kharga basin by integrated application of Vertical Electrical Sounding (VES) and Time domain Electromagnetic (TEM) techniques. The VES data were measured at 28 points arranged along a north-south trending line by applying Schlumberger array with a maximum current-electrode spacing (AB) of 1000 m. The TEM data were measured at 167 points arranged along 11 east-west trending lines by using a single square loop with 50 m loop-side length. The VES and TEM data have been individually inverted, where the VES models were used as initial models for TEM data inversion. The final models were used for construction of 17 geoelectrical sections and 5 contour maps describing subsurface water-bearing layers at the investigated area. Correlation of the obtained models with geologic, hydrogeologic and borehole information indicates that the shallow aquifer comprises two zones (A-up) and (B-down) separated by a highly conductive shale layer. The upper zone (A) is composed of fine to medium sand with thin clay intercalations. It exhibits low to moderate resistivities. This zone was detected at depth values ranging from 10 to 70 m below ground surface (bgs) and shows a thickness of 25-90 m. The lower zone (B) exhibits moderate to high resistivity values with expected good water quality. The upper surface of zone B was detected at 60-165 m depth.

Active faults and deformation of the Catania margin (Eastern Sicily): preliminary results from the CRACK marine geophysical survey (Aug./Sep. 2016 R/V Tethys2)

NASA Astrophysics Data System (ADS)

Gutscher, M. A.; Dellong, D.; Graindorge, D.; Le Roy, P., Sr.; Dominguez, S.; Barreca, G.; Cunarro, D.; Petersen, F.; Urlaub, M.; Krastel, S.; Gross, F.; Kopp, H.

2016-12-01

The marine geophysical survey entitled CRACK (Catania margin, Relief, ACtive faults and historical earthquaKes) aims to investigate active faults offshore eastern Sicily. Several faults have been mapped onshore on the SE flank of Mt. Etna and recently a major strike-slip fault system was mapped in the deeper offshore area. The purpose of this study is to perform shallow water bathymetric mapping and a high-resolution sparker seismic survey in the shelf zone between the deep offshore and the onshore areas, a zone less well studied. Aside from the two fault systems mentioned above, there is also the Malta escarpment, the onshore (but buried) blind-thrust of the Gela Nappe and the lateral ramp thrust of the Calabrian accretionary wedge. Somehow all these structures connect offshore Catania, though exactly how is still unknown. The study will take place between 18 Aug. and 4 Sept. 2016 using the 25m long coastal research vessel Tethys2 and will consist of three 5-day legs. The first leg (zone 2) will be purely sparker seismics and legs 2 and 3 will be combined seismics and bathymetry along the shallow submarine SE flank of Mt. Etna (zone 1) and shallow continental shelf SE of Catania (zone 3). Some time during the first leg will also be devoted to submarine geodesy. Five submarine geodetic stations were deployed along the dextral strike-slip "North Alfeo - Etna" fault by the German GEOMAR Helmholtz Centre for Ocean Research Kiel in April 2016 (R/V Poseidon). The long-term monitoring campaign should help indicate in the future if this fault is slowly creeping or not currently moving. The first five months of data will be downloaded during the CRACK cruise.

Pronounced zonation of seismic anisotropy in the Western Hellenic subduction zone and its geodynamic significance

NASA Astrophysics Data System (ADS)

Olive, Jean-Arthur; Pearce, Frederick; Rondenay, Stéphane; Behn, Mark D.

2014-04-01

Many subduction zones exhibit significant retrograde motion of their arc and trench. The observation of fast shear-wave velocities parallel to the trench in such settings has been inferred to represent trench-parallel mantle flow beneath a retreating slab. Here, we investigate this process by measuring seismic anisotropy in the shallow Aegean mantle. We carry out shear-wave splitting analysis on a dense array of seismometers across the Western Hellenic Subduction Zone, and find a pronounced zonation of anisotropy at the scale of the subduction zone. Fast SKS splitting directions subparallel to the trench-retreat direction dominate the region nearest to the trench. Fast splitting directions abruptly transition to trench-parallel above the corner of the mantle wedge, and rotate back to trench-normal over the back-arc. We argue that the trench-normal anisotropy near the trench is explained by entrainment of an asthenospheric layer beneath the shallow-dipping portion of the slab. Toward the volcanic arc this signature is overprinted by trench-parallel anisotropy in the mantle wedge, likely caused by a layer of strained serpentine immediately above the slab. Arcward steepening of the slab and horizontal divergence of mantle flow due to rollback may generate an additional component of sub-slab trench-parallel anisotropy in this region. Poloidal flow above the retreating slab is likely the dominant source of back-arc trench-normal anisotropy. We hypothesize that trench-normal anisotropy associated with significant entrainment of the asthenospheric mantle near the trench may be widespread but only observable at shallow-dipping subduction zones where stations nearest the trench do not overlie the mantle wedge.

Sanitary protection zoning based on time-dependent vulnerability assessment model - case examples at two different type of aquifers

NASA Astrophysics Data System (ADS)

Živanović, Vladimir; Jemcov, Igor; Dragišić, Veselin; Atanacković, Nebojša

2017-04-01

Delineation of sanitary protection zones of groundwater source is a comprehensive and multidisciplinary task. Uniform methodology for protection zoning for various type of aquifers is not established. Currently applied methods mostly rely on horizontal groundwater travel time toward the tapping structure. On the other hand, groundwater vulnerability assessment methods evaluate the protective function of unsaturated zone as an important part of groundwater source protection. In some particular cases surface flow might also be important, because of rapid transfer of contaminants toward the zones with intense infiltration. For delineation of sanitary protection zones three major components should be analysed: vertical travel time through unsaturated zone, horizontal travel time through saturated zone and surface water travel time toward intense infiltration zones. Integrating the aforementioned components into one time-dependent model represents a basis of presented method for delineation of groundwater source protection zones in rocks and sediments of different porosity. The proposed model comprises of travel time components of surface water, as well as groundwater (horizontal and vertical component). The results obtained using the model, represent the groundwater vulnerability as the sum of the surface and groundwater travel time and corresponds to the travel time of potential contaminants from the ground surface to the tapping structure. This vulnerability assessment approach do not consider contaminant properties (intrinsic vulnerability) although it can be easily improved for evaluating the specific groundwater vulnerability. This concept of the sanitary protection zones was applied at two different type of aquifers: karstic aquifer of catchment area of Blederija springs and "Beli Timok" source of intergranular shallow aquifer. The first one represents a typical karst hydrogeological system with part of the catchment with allogenic recharge, and the second one, the groundwater source within shallow intergranular alluvial aquifer, dominantly recharged by river bank filtration. For sanitary protection zones delineation, the applied method has shown the importance of introducing all travel time components equally. In the case of the karstic source, the importance of the surface flow toward ponor zones has been emphasized, as a consequence of rapid travel time of water in relation to diffuse infiltration from autogenic part. When it comes to the shallow intergranular aquifer, the character of the unsaturated zone gets more prominent role in the source protection, as important buffer of the vertical movement downward. The applicability of proposed method has been shown regardless of the type of the aquifer, and at the same time intelligible results of the delineated sanitary protection zones are possible to validate with various methods. Key words: groundwater protection zoning, time dependent model, karst aquifer, intergranular aquifer, groundwater source protection

USGS advances in integrated, high-resolution sea-floor mapping: inner continental shelf to estuaries

USGS Publications Warehouse

Denny, J.F.; Schwab, W.C.; Twichell, D.C.; O'Brien, T.F.; Danforth, W.W.; Foster, D.S.; Bergeron, E.; Worley, C.W.; Irwin, B.J.; Butman, B.; Valentine, P.C.; Baldwin, W.E.; Morton, R.A.; Thieler, E.R.; Nichols, D.R.; Andrews, B.D.

2007-01-01

The U.S. Geological Survey (USGS) has been involved in geological mapping of the sea floor for the past thirty years. Early geophysical and acoustic mapping efforts using GLORIA (Geologic LOng Range Inclined ASDIC) a long-range sidescan-sonar system, provided broad-scale imagery of deep waters within the U.S. Exclusive Economic Zone (EEZ). In the early 1990's, research emphasis shifted from deep- to shallow-water environments to address pertinent coastal research and resource management issues. Use of shallow-water, high-resolution geophysical systems has enhanced our understanding of the processes shaping shallow marine environments. However, research within these shallow-water environments continues to present technological challenges.

Trunk and root sprouting on residual trees after thinning a Quercus chrysolepis stand

Treesearch

Timothy E. Paysen; Marcia G. Narog; Robert G. Tissell; Melody A. Lardner

1991-01-01

Canyon live oak (Quercus chrysolepis Liebm.) showed sprouting patterns on root and trunk zones foUowing forest thinning. Root sprouting was heaviest on north and east (downhill) sides of residual trees; bole sprouts were concentrated on the south and west (uphill). Root and bole sprouting appeared to be responding to different stimuli, or...

Effects of elevated root zone CO2 on xerophytic shrubs in re-vegetated sandy dunes at smaller spatial and temporal scales.

PubMed

Lei, Huang; Zhishan, Zhang

2015-01-01

The below-ground CO2 concentration in some crusted soils or flooded fields is usually ten or hundred times larger than the normal levels. Recently, a large number of studies have focused on elevated CO2 in the atmosphere; however, only few have examined the influence of elevated root zone CO2 on plant growth and vegetation succession. In the present study, a closed-air CO2 enrichment (CACE) system was designed to simulate elevated CO2 concentrations in the root zones. The physio-ecological characteristics of two typical xerophytic shrubs C. korshinskii and A. ordosica in re-vegetated desert areas were investigated at different soil CO2 concentrations from March 2011 to October 2013. Results showed that plant growth, phenophase, photosynthetic rate, stomatal conductance, transpiration rate, and water use efficiency for the two xerophytic shrubs were all increased at first and then decreased with increasing soil CO2 concentrations, and the optimal soil CO2 concentration thresholds for C. korshinskii and A. ordosica were 0.554 and 0.317%, respectively. And A. ordosica was more tolerate to root zone CO2 variation when compared with C. korshinskii, possible reasons and vegetation succession were also discussed.

Discrimination of plant root zone water status in greenhouse production based on phenotyping and machine learning techniques.

PubMed

Guo, Doudou; Juan, Jiaxiang; Chang, Liying; Zhang, Jingjin; Huang, Danfeng

2017-08-15

Plant-based sensing on water stress can provide sensitive and direct reference for precision irrigation system in greenhouse. However, plant information acquisition, interpretation, and systematical application remain insufficient. This study developed a discrimination method for plant root zone water status in greenhouse by integrating phenotyping and machine learning techniques. Pakchoi plants were used and treated by three root zone moisture levels, 40%, 60%, and 80% relative water content. Three classification models, Random Forest (RF), Neural Network (NN), and Support Vector Machine (SVM) were developed and validated in different scenarios with overall accuracy over 90% for all. SVM model had the highest value, but it required the longest training time. All models had accuracy over 85% in all scenarios, and more stable performance was observed in RF model. Simplified SVM model developed by the top five most contributing traits had the largest accuracy reduction as 29.5%, while simplified RF and NN model still maintained approximately 80%. For real case application, factors such as operation cost, precision requirement, and system reaction time should be synthetically considered in model selection. Our work shows it is promising to discriminate plant root zone water status by implementing phenotyping and machine learning techniques for precision irrigation management.

Application of Terrestrial Microwave Remote Sensing to Agricultural Drought Monitoring

NASA Astrophysics Data System (ADS)

Crow, W. T.; Bolten, J. D.

2014-12-01

Root-zone soil moisture information is a valuable diagnostic for detecting the onset and severity of agricultural drought. Current attempts to globally monitor root-zone soil moisture are generally based on the application of soil water balance models driven by observed meteorological variables. Such systems, however, are prone to random error associated with: incorrect process model physics, poor parameter choices and noisy meteorological inputs. The presentation will describe attempts to remediate these sources of error via the assimilation of remotely-sensed surface soil moisture retrievals from satellite-based passive microwave sensors into a global soil water balance model. Results demonstrate the ability of satellite-based soil moisture retrieval products to significantly improve the global characterization of root-zone soil moisture - particularly in data-poor regions lacking adequate ground-based rain gage instrumentation. This success has lead to an on-going effort to implement an operational land data assimilation system at the United States Department of Agriculture's Foreign Agricultural Service (USDA FAS) to globally monitor variations in root-zone soil moisture availability via the integration of satellite-based precipitation and soil moisture information. Prospects for improving the performance of the USDA FAS system via the simultaneous assimilation of both passive and active-based soil moisture retrievals derived from the upcoming NASA Soil Moisture Active/Passive mission will also be discussed.

Occurrence of Agricultural Chemicals in Shallow Ground Water and the Unsaturated Zone, Northeast Nebraska Glacial Till, 2002-04

USGS Publications Warehouse

Stanton, Jennifer S.; Steele, Gregory V.; Vogel, Jason R.

2007-01-01

Agricultural chemicals applied at the land surface in northeast Nebraska can move downward, past the crop root zone, to ground water. Because agricultural chemicals applied at the land surface are more likely to be observed in the shallowest part of an aquifer, an assessment of shallow ground-water and unsaturated zone quality in the northeast Nebraska glacial till was completed between 2002 and 2004. Ground-water samples were collected at the first occurrence of ground water or just below the water table at 32 sites located in areas likely affected by agriculture. Four of the 32 sites were situated along a ground-water flow path with its downgradient end next to Maple Creek. Twenty-eight sites were installed immediately adjacent to agricultural fields throughout the glacial-till area. In addition to those 32 sites, two sites were installed in pastures to represent ground-water conditions in a non-cropland setting. Ground-water samples were analyzed for physical properties and concentrations of nitrogen and phosphorus compounds, selected pesticides and pesticide degradates, dissolved solids, major ions, trace elements, and dissolved organic carbon. Chlorofluorocarbons (CFCs) or sulfur hexafluoride (SF6) concentrations were analyzed at about 70 percent of the monitoring wells to estimate the residence time of ground water. Borehole-core samples were collected from 28 of the well boreholes. Sediment in the unsaturated zone was analyzed for nitrate, chloride, and ammonia concentrations. Analytical results indicated that the agricultural chemicals most often detected during this study were nitrates and herbicides. Nitrate as nitrogen (nitrate-N) concentrations (2003 median 9.53 milligrams per liter) indicated that human activity has affected the water quality of recently recharged ground water in approximately two-thirds of the wells near corn and soybean fields. The principal pesticide compounds that were detected reflect the most-used pesticides in the area and included parent or degradate compounds of acetochlor, alachlor, atrazine, and metolachlor. Overall, pesticide concentrations in ground-water samples collected in 2003 and 2004 were small and did not exceed public drinking-water standards where established. On average, more pesticides were detected in the flow-path wells than in the glacial-till network wells. The presence of a perennial stream within 1,640 feet of a well was correlated to smaller nitrate-N concentrations in the well water, and the presence of a road ditch within 164 feet of the well was correlated to the presence of detectable pesticides in the well water. All other variables tested showed no significant correlations to nitrate-N concentrations or pesticide detections. Unsaturated zone soil cores collected in 2002 from well boreholes indicated that nitrogen in the forms of nitrate-N and ammonia as nitrogen (ammonia-N) was available in the unsaturated zone for transport to ground water. Concentrations of nitrate-N and ammonia-N in these soil cores were inversely correlated to depth, and nitrate-N concentrations were correlated to chloride concentrations.

Maps showing seismic landslide hazards in Anchorage, Alaska

USGS Publications Warehouse

Jibson, Randall W.

2014-01-01

The devastating landslides that accompanied the great 1964 Alaska earthquake showed that seismically triggered landslides are one of the greatest geologic hazards in Anchorage. Maps quantifying seismic landslide hazards are therefore important for planning, zoning, and emergency-response preparation. The accompanying maps portray seismic landslide hazards for the following conditions: (1) deep, translational landslides, which occur only during great subduction-zone earthquakes that have return periods of =300-900 yr; (2) shallow landslides for a peak ground acceleration (PGA) of 0.69 g, which has a return period of 2,475 yr, or a 2 percent probability of exceedance in 50 yr; and (3) shallow landslides for a PGA of 0.43 g, which has a return period of 475 yr, or a 10 percent probability of exceedance in 50 yr. Deep, translational landslide hazards were delineated based on previous studies of such landslides, with some modifications based on field observations of locations of deep landslides. Shallow-landslide hazards were delineated using a Newmark-type displacement analysis for the two probabilistic ground motions modeled.

Toward resolving an earthquake ground motion mystery in west Seattle, Washington State: Shallow seismic focusing may cause anomalous chimney damage

USGS Publications Warehouse

Stephenson, W.J.; Frankel, A.D.; Odum, J.K.; Williams, R.A.; Pratt, T.L.

2006-01-01

A shallow bedrock fold imaged by a 1.3-km long high-resolution shear-wave seismic reflection profile in west Seattle focuses seismic waves arriving from the south. This focusing may cause a pocket of amplified ground shaking and the anomalous chimney damage observed in earthquakes of 1949, 1965 and 2001. The 200-m bedrock fold at ???300-m depth is caused by deformation across an inferred fault within the Seattle fault zone. Ground motion simulations, using the imaged geologic structure and northward-propagating north-dipping plane wave sources, predict a peak horizontal acceleration pattern that matches that observed in strong motion records of the 2001 Nisqually event. Additionally, a pocket of chimney damage reported for both the 1965 and the 2001 earthquakes generally coincides with a zone of simulated amplification caused by focusing. This study further demonstrates the significant impact shallow (<1km) crustal structures can have on earthquake ground-motion variability.

Auxin distribution is differentially affected by nitrate in roots of two rice cultivars differing in responsiveness to nitrogen

PubMed Central

Song, Wenjing; Sun, Huwei; Li, Jiao; Gong, Xianpo; Huang, Shuangjie; Zhu, Xudong; Zhang, Yali; Xu, Guohua

2013-01-01

Background and Aims Although ammonium (NH4+) is the preferred form of nitrogen over nitrate (NO3−) for rice (Oryza sativa), lateral root (LR) growth in roots is enhanced by partial NO3− nutrition (PNN). The roles of auxin distribution and polar transport in LR formation in response to localized NO3− availability are not known. Methods Time-course studies in a split-root experimental system were used to investigate LR development patterns, auxin distribution, polar auxin transport and expression of auxin transporter genes in LR zones in response to localized PNN in ‘Nanguang’ and ‘Elio’ rice cultivars, which show high and low responsiveness to NO3−, respectively. Patterns of auxin distribution and the effects of polar auxin transport inhibitors were also examined in DR5::GUS transgenic plants. Key Results Initiation of LRs was enhanced by PNN after 7 d cultivation in ‘Nanguang’ but not in ‘Elio’. Auxin concentration in the roots of ‘Nanguang’ increased by approx. 24 % after 5 d cultivation with PNN compared with NH4+ as the sole nitrogen source, but no difference was observed in ‘Elio’. More auxin flux into the LR zone in ‘Nanguang’ roots was observed in response to NO3− compared with NH4+ treatment. A greater number of auxin influx and efflux transporter genes showed increased expression in the LR zone in response to PNN in ‘Nanguang’ than in ‘Elio’. Conclusions The results indicate that higher NO3− responsiveness is associated with greater auxin accumulation in the LR zone and is strongly related to a higher rate of LR initiation in the cultivar ‘Nanguang’. PMID:24095838

Particle tracking for selected groundwater wells in the lower Yakima River Basin, Washington

USGS Publications Warehouse

Bachmann, Matthew P.

2015-10-21

Generalized groundwater-flow directions in unconsolidated basin-fill deposits were towards the Yakima River, which acts as a local sink for shallow groundwater, and roughly parallel to topographic gradients. Particles backtracked from more shallow aquifer locations traveled shorter distances before reaching the water table than particles from deeper locations. Flowpaths for particles starting at wells completed in the basalt units underlying the basin-fill deposits sometimes were different than for wells with similar lateral locations but more shallow depths. In cases where backtracking particles reached geologic structures simulated as flow barriers, abrupt changes in direction in some particle pathlines suggest significant changes in simulated hydraulic gradients that may not accurately reflect actual conditions. Most groundwater wells sampled had associated zones of contribution within the Toppenish/Benton subbasin between the well and the nearest subbasin margin, but interpretation of these results for any specific well is likely to be complicated by the assumptions and simplifications inherent in the model construction process. Delineated zones of contribution for individual wells are sensitive to the depths assigned to the screened interval of the well, resulting in simulated areal extents of the zones of contribution to a discharging well that are elongated in the direction of groundwater flow.

Near-surface structure of the Carpathian Foredeep marginal zone in the Roztocze Hills area

NASA Astrophysics Data System (ADS)

Majdański, M.; Grzyb, J.; Owoc, B.; Krogulec, T.; Wysocka, A.

2018-03-01

Shallow seismic survey was made along 1280 m profile in the marginal zone of the Carpathian Foredeep. Measurements performed with standalone wireless stations and especially designed accelerated weight drop system resulted in high fold (up to 60), long offset seismic data. The acquisition has been designed to gather both high-resolution reflection and wide-angle refraction data at long offsets. Seismic processing has been realised separately in two paths with focus on the shallow and deep structures. Data processing for the shallow part combines the travel time tomography and the wide angle reflection imaging. This difficult analysis shows that a careful manual front mute combined with correct statics leads to detailed recognition of structures between 30 and 200 m. For those depths, we recognised several SW dipping tectonic displacements and a main fault zone that probably is the main fault limiting the Roztocze Hills area, and at the same time constitutes the border of the Carpathian Forebulge. The deep interpretation clearly shows a NE dipping evaporate layer at a depth of about 500-700 m. We also show limitations of our survey that leads to unclear recognition of the first 30 m, concluding with the need of joint interpretation with other geophysical methods.

The role of calcium and calmodulin in the response of roots to gravity

NASA Technical Reports Server (NTRS)

Evans, Michael L.

1992-01-01

There is general agreement that, in roots, the primary detection of the gravitropic signal occurs in the columella cells of the cap and that this results in the generation of a signal that moves into the elongation zone causing the asymmetric growth that leads to downward curvature. Recent work has generated considerable evidence that indicates that auxin is the ultimate mediator of differential growth during root (and shoot) gravitropism. Our studies of the time course of curvature, auxin redistribution and/or adaptation, and electrical potential changes in maize roots have led to the following generalizations: (1) downward curvature begins 18 to 32 min following gravistimulation; (2) asymmetric auxin redistribution across the root cap begins at about the same time as curvature or perhaps slight earlier; (3) there is a lag of approx. 15 min in the response of roots to applied auxin; and (4) gravi-induced changes in intracellular potentials of cortical cells within the elongation zone occur within 30 s following stimulation.

Gravity-regulated differential auxin transport from columella to lateral root cap cells

NASA Technical Reports Server (NTRS)

Ottenschlager, Iris; Wolff, Patricia; Wolverton, Chris; Bhalerao, Rishikesh P.; Sandberg, Goran; Ishikawa, Hideo; Evans, Mike; Palme, Klaus

2003-01-01

Gravity-induced root curvature has long been considered to be regulated by differential distribution of the plant hormone auxin. However, the cells establishing these gradients, and the transport mechanisms involved, remain to be identified. Here, we describe a GFP-based auxin biosensor to monitor auxin during Arabidopsis root gravitropism at cellular resolution. We identify elevated auxin levels at the root apex in columella cells, the site of gravity perception, and an asymmetric auxin flux from these cells to the lateral root cap (LRC) and toward the elongation zone after gravistimulation. We differentiate between an efflux-dependent lateral auxin transport from columella to LRC cells, and an efflux- and influx-dependent basipetal transport from the LRC to the elongation zone. We further demonstrate that endogenous gravitropic auxin gradients develop even in the presence of an exogenous source of auxin. Live-cell auxin imaging provides unprecedented insights into gravity-regulated auxin flux at cellular resolution, and strongly suggests that this flux is a prerequisite for root gravitropism.

Measuring and modeling of a three-dimensional tracer transport in a planted soil column

NASA Astrophysics Data System (ADS)

Schroeder, N.; Javaux, M.; Haber-Pohlmeier, S.; Pohlmeier, A. J.; Huber, K.; Vereecken, H.; Vanderborght, J.

2013-12-01

Water flow from soil to root is driven by the plant transpiration and an important component of the hydrological cycle. The model R-SWMS combines three-dimensional (3D) water flow and solute transport in soil with a detailed description of root structure in three dimensions [1,2]. This model offers the possibility to calculate root water and solute uptake and flow within the roots, which enables explicit studies with respect to the distribution of water and solutes around the roots as well as local processes at the root-soil interface. In this study, we compared measured data from a tracer experiment using Magnetic Resonance Imaging (MRI) with simulations in order to assess the distribution and magnitude of the water uptake of a young lupine plant. An aqueous solution of the Gadolinium-complex (Gd-DTPA2-) was chosen as a tracer, as it behaves conservatively and is ideally suited for MRI. Water flow in the soil towards the roots can thus be visualized by following the change in tracer concentrations over time. The data were obtained by MRI, providing high resolution 3D images of the tracer distribution and root architecture structures by using a spin echo pulse sequence, which is strongly T1- weighted to be tracer sensitive [3], and T2 -weighted for root imaging [4]. This experimental setup was simulated using the 3D high-resolution numerical model R-SWMS. The comparison between MRI data and the simulations showed extensive effects of root architecture parameters on solute spreading. Although the results of our study showed the strength of combining non-invasive measurements and 3D modeling of solute and water flow in soil-root systems, where the derivation of plant hydraulic parameters such as axial and radial root conductivities is possible, current limitations were found with respect to MRI measurements and process description. [1] Javaux, M., T. Schröder, J. Vanderborght, and H. Vereecken (2008), Use of a Three-Dimensional Detailed Modeling Approach for Predicting Root Water Uptake, Vadose Zone Journal, 7(3), 1079-1079. [2] Schröder, N., M. Javaux, J. Vanderborght, B. Steffen, and H. Vereecken (2012), Effect of Root Water and Solute Uptake on Apparent Soil Dispersivity: A Simulation Study, Vadose Zone Journal, 11(3). [3 ]Haber-Pohlmeier, S., Bechtold, M., Stapf, S., and Pohlmeier, A. (2010). Water Flow Monitored by Tracer Transport in Natural Porous Media Using Magnetic Resonance Imaging. Vadose Zone Journal (9),835-845. [4] Stingaciu, L. R., Schulz, H., Pohlmeier, A., Behnke, S., Zilken, H., Vereecken, H., and Javaux, M. (2013). In Situ Root System Architecture Extraction from Magnetic Resonance Imaging for Application to Water Uptake Modeling. Vadose Zone Journal.

Synchrotron X-ray microfluorescence measurement of metal distributions in Phragmites australis root system in the Yangtze River intertidal zone

DOE PAGES

Feng, Huan; Zhang, Weiguo; Qian, Yu; ...

2016-06-15

This paper investigates the distributions of Br, Ca, Cl, Cr, Cu, K, Fe, Mn, Pb, Ti, V and Zn in Phragmites australis root system and the function of Fe nanoparticles in scavenging metals in the root epidermis using synchrotron X-ray microfluorescence, synchrotron transmission X-ray microscope measurement and synchrotron X-ray absorption near-edge structure techniques. The purpose of this study is to understand the mobility of metals in wetland plant root systems after their uptake from rhizosphere soils. Phragmites australis samples were collected in the Yangtze River intertidal zone in July 2013. The results indicate that Fe nanoparticles are present in themore » root epidermis and that other metals correlate significantly with Fe, suggesting that Fe nanoparticles play an important role in metal scavenging in the epidermis.« less