Science.gov

Sample records for simulating structural collapse

  1. Formation of a protocluster: A virialized structure from gravoturbulent collapse. I. Simulation of cluster formation in a collapsing molecular cloud

    NASA Astrophysics Data System (ADS)

    Lee, Yueh-Ning; Hennebelle, Patrick

    2016-06-01

    Context. Stars are often observed to form in clusters and it is therefore important to understand how such a region of concentrated mass is assembled out of the diffuse medium. The properties of such a region eventually prescribe the important physical mechanisms and determine the characteristics of the stellar cluster. Aims: We study the formation of a gaseous protocluster inside a molecular cloud and associate its internal properties with those of the parent cloud by varying the level of the initial turbulence of the cloud with a view to better characterize the subsequent stellar cluster formation. Methods: We performed high resolution magnetohydrodynamic (MHD) simulations of gaseous protoclusters forming in molecular clouds collapsing under self-gravity. We determined ellipsoidal cluster regions via gas kinematics and sink particle distribution, permitting us to determine the mass, size, and aspect ratio of the cluster. We studied the cluster properties, such as kinetic and gravitational energy, and made links to the parent cloud. Results: The gaseous protocluster is formed out of global collapse of a molecular cloud and has non-negligible rotation owing to angular momentum conservation during the collapse of the object. Most of the star formation occurs in this region, which occupies only a small volume fraction of the whole cloud. This dense entity is a result of the interplay between turbulence and gravity. We identify such regions in simulations and compare the gas and sink particles to observed star-forming clumps and embedded clusters, respectively. The gaseous protocluster inferred from simulation results presents a mass-size relation that is compatible with observations. We stress that the stellar cluster radius, although clearly correlated with the gas cluster radius, depends sensitively on its definition. Energy analysis is performed to confirm that the gaseous protocluster is a product of gravoturbulent reprocessing and that the support of turbulent

  2. Rigid collapsible dish structure

    NASA Technical Reports Server (NTRS)

    Palmer, William B. (Inventor); Giebler, Martin M. (Inventor)

    1982-01-01

    A collapsible dish structure composed of a plurality of rows of rigid radial petal assemblies concentric with the axis of the dish. The petal assemblies consist of a center petal and two side petals, the center petal hinged on an axis tangent to a circle concentric with the axis of the dish and the side petals hinged to the center petal at their mating edge. The center petal is foldable inwardly and the side petals rotate about their hinges such that the collapsed dish structure occupies a much smaller volume than the deployed dish. Means of controlling the shape of the dish to compensate for differential expansion of the deployed dish are also provided.

  3. Atomistic simulations of langmuir monolayer collapse.

    PubMed

    Lorenz, Christian D; Travesset, Alex

    2006-11-21

    Monolayers at the vapor/water interface collapse by exploring the third dimension at sufficient lateral compression, either by forming three-dimensional structures or by solubilization into the aqueous solution. In this paper, we provide an atomistic description of collapse from molecular dynamics (MD) simulations. More specifically, we investigate monolayers of arachidic acids spread on pure water and in an aqueous solution with Ca2+ ions in the subphase. In both cases, it is found that the collapsed systems generally lead to the formation of multilayer structures, which in the system with Ca2+ ions, proceeds by an intermediate regime where the monolayer exhibits significant roughness (of the order of 4 A). If no roughness is present, the system forms collapsed structures into the aqueous solution. The computational cost of atomic MD limits our simulations to relatively small system sizes, fast compression rates, and temporal scales on the order of a nanosecond. We discuss the issues caused by these limitations and present a detailed discussion of how the collapse regime proceeds at long time scales. We conclude with a summary of the implications of our results for further theoretical and experimental studies. PMID:17106994

  4. Core-collapse supernova explosion simulations

    SciTech Connect

    Cardall, Christian Y

    2011-01-01

    Neutrinos play important roles in the pre-collapse evolution, explosion, and aftermath of core-collapse supernovae. Detected neutrino signals from core-collapse supernovae would provide insight into the explosion mechanism and unknown neutrino mixing parameters. Achieving these goals requires large-scale, multiphysics simulations. For many years, several groups have performed such simulations with increasing realism. Current simulations and plans for future work of the Oak Ridge group are described.

  5. Diverse melting modes and structural collapse of hollow bimetallic core-shell nanoparticles: a perspective from molecular dynamics simulations.

    PubMed

    Huang, Rao; Shao, Gui-Fang; Zeng, Xiang-Ming; Wen, Yu-Hua

    2014-11-14

    Introducing hollow structures into metallic nanoparticles has become a promising route to improve their catalytic performances. A fundamental understanding of thermal stability of these novel nanostructures is of significance for their syntheses and applications. In this article, molecular dynamics simulations have been employed to offer insights into the thermodynamic evolution of hollow bimetallic core-shell nanoparticles. Our investigation reveals that for hollow Pt-core/Au-shell nanoparticle, premelting originates at the exterior surface, and a typical two-stage melting behavior is exhibited, similar to the solid ones. However, since the interior surface provides facilitation for the premelting initiating at the core, the two-stage melting is also observed in hollow Au-core/Pt-shell nanoparticle, remarkably different from the solid one. Furthermore, the collapse of hollow structure is accompanied with the overall melting of the hollow Pt-core/Au-shell nanoparticle while it occurs prior to that of the hollow Au-core/Pt-shell nanoparticle and leads to the formation of a liquid-core/solid-shell structure, although both of them finally transform into a mixing alloy with Au-dominated surface. Additionally, the existence of stacking faults in the hollow Pt-core/Au-shell nanoparticle distinctly lowers its melting point. This study could be of great importance to the design and development of novel nanocatalysts with both high activity and excellent stability.

  6. Diverse Melting Modes and Structural Collapse of Hollow Bimetallic Core-Shell Nanoparticles: A Perspective from Molecular Dynamics Simulations

    PubMed Central

    Huang, Rao; Shao, Gui-Fang; Zeng, Xiang-Ming; Wen, Yu-Hua

    2014-01-01

    Introducing hollow structures into metallic nanoparticles has become a promising route to improve their catalytic performances. A fundamental understanding of thermal stability of these novel nanostructures is of significance for their syntheses and applications. In this article, molecular dynamics simulations have been employed to offer insights into the thermodynamic evolution of hollow bimetallic core-shell nanoparticles. Our investigation reveals that for hollow Pt-core/Au-shell nanoparticle, premelting originates at the exterior surface, and a typical two-stage melting behavior is exhibited, similar to the solid ones. However, since the interior surface provides facilitation for the premelting initiating at the core, the two-stage melting is also observed in hollow Au-core/Pt-shell nanoparticle, remarkably different from the solid one. Furthermore, the collapse of hollow structure is accompanied with the overall melting of the hollow Pt-core/Au-shell nanoparticle while it occurs prior to that of the hollow Au-core/Pt-shell nanoparticle and leads to the formation of a liquid-core/solid-shell structure, although both of them finally transform into a mixing alloy with Au-dominated surface. Additionally, the existence of stacking faults in the hollow Pt-core/Au-shell nanoparticle distinctly lowers its melting point. This study could be of great importance to the design and development of novel nanocatalysts with both high activity and excellent stability. PMID:25394424

  7. Collapse Mechanisms Of Masonry Structures

    NASA Astrophysics Data System (ADS)

    Zuccaro, G.; Rauci, M.

    2008-07-01

    The paper outlines a possible approach to typology recognition, safety check analyses and/or damage measuring taking advantage by a multimedia tool (MEDEA), tracing a guided procedure useful for seismic safety check evaluation and post event macroseismic assessment. A list of the possible collapse mechanisms observed in the post event surveys on masonry structures and a complete abacus of the damages are provided in MEDEA. In this tool a possible combination between a set of damage typologies and each collapse mechanism is supplied in order to improve the homogeneity of the damages interpretation. On the other hand recent researches of one of the author have selected a number of possible typological vulnerability factors of masonry buildings, these are listed in the paper and combined with potential collapse mechanisms to be activated under seismic excitation. The procedure takes place from simple structural behavior models, derived from the Umbria-Marche earthquake observations, and tested after the San Giuliano di Puglia event; it provides the basis either for safety check analyses of the existing buildings or for post-event structural safety assessment and economic damage evaluation. In the paper taking advantage of MEDEA mechanisms analysis, mainly developed for the post event safety check surveyors training, a simple logic path is traced in order to approach the evaluation of the masonry building safety check. The procedure starts from the identification of the typological vulnerability factors to derive the potential collapse mechanisms and their collapse multipliers and finally addresses the simplest and cheapest strengthening techniques to reduce the original vulnerability. The procedure has been introduced in the Guide Lines of the Regione Campania for the professionals in charge of the safety check analyses and the buildings strengthening in application of the national mitigation campaign introduced by the Ordinance of the Central Government n. 3362

  8. Collapse Mechanisms Of Masonry Structures

    SciTech Connect

    Zuccaro, G.; Rauci, M.

    2008-07-08

    The paper outlines a possible approach to typology recognition, safety check analyses and/or damage measuring taking advantage by a multimedia tool (MEDEA), tracing a guided procedure useful for seismic safety check evaluation and post event macroseismic assessment. A list of the possible collapse mechanisms observed in the post event surveys on masonry structures and a complete abacus of the damages are provided in MEDEA. In this tool a possible combination between a set of damage typologies and each collapse mechanism is supplied in order to improve the homogeneity of the damages interpretation. On the other hand recent researches of one of the author have selected a number of possible typological vulnerability factors of masonry buildings, these are listed in the paper and combined with potential collapse mechanisms to be activated under seismic excitation. The procedure takes place from simple structural behavior models, derived from the Umbria-Marche earthquake observations, and tested after the San Giuliano di Puglia event; it provides the basis either for safety check analyses of the existing buildings or for post-event structural safety assessment and economic damage evaluation. In the paper taking advantage of MEDEA mechanisms analysis, mainly developed for the post event safety check surveyors training, a simple logic path is traced in order to approach the evaluation of the masonry building safety check. The procedure starts from the identification of the typological vulnerability factors to derive the potential collapse mechanisms and their collapse multipliers and finally addresses the simplest and cheapest strengthening techniques to reduce the original vulnerability. The procedure has been introduced in the Guide Lines of the Regione Campania for the professionals in charge of the safety check analyses and the buildings strengthening in application of the national mitigation campaign introduced by the Ordinance of the Central Government n. 3362

  9. Simulating the Entropic Collapse of Coarse-Grained Chromosomes

    PubMed Central

    Shendruk, Tyler N.; Bertrand, Martin; de Haan, Hendrick W.; Harden, James L.; Slater, Gary W.

    2015-01-01

    Depletion forces play a role in the compaction and decompaction of chromosomal material in simple cells, but it has remained debatable whether they are sufficient to account for chromosomal collapse. We present coarse-grained molecular dynamics simulations, which reveal that depletion-induced attraction is sufficient to cause the collapse of a flexible chain of large structural monomers immersed in a bath of smaller depletants. These simulations use an explicit coarse-grained computational model that treats both the supercoiled DNA structural monomers and the smaller protein crowding agents as combinatorial, truncated Lennard-Jones spheres. By presenting a simple theoretical model, we quantitatively cast the action of depletants on supercoiled bacterial DNA as an effective solvent quality. The rapid collapse of the simulated flexible chromosome at the predicted volume fraction of depletants is a continuous phase transition. Additional physical effects to such simple chromosome models, such as enthalpic interactions between structural monomers or chain rigidity, are required if the collapse is to be a first-order phase transition. PMID:25692586

  10. Simulating the entropic collapse of coarse-grained chromosomes.

    PubMed

    Shendruk, Tyler N; Bertrand, Martin; de Haan, Hendrick W; Harden, James L; Slater, Gary W

    2015-02-17

    Depletion forces play a role in the compaction and decompaction of chromosomal material in simple cells, but it has remained debatable whether they are sufficient to account for chromosomal collapse. We present coarse-grained molecular dynamics simulations, which reveal that depletion-induced attraction is sufficient to cause the collapse of a flexible chain of large structural monomers immersed in a bath of smaller depletants. These simulations use an explicit coarse-grained computational model that treats both the supercoiled DNA structural monomers and the smaller protein crowding agents as combinatorial, truncated Lennard-Jones spheres. By presenting a simple theoretical model, we quantitatively cast the action of depletants on supercoiled bacterial DNA as an effective solvent quality. The rapid collapse of the simulated flexible chromosome at the predicted volume fraction of depletants is a continuous phase transition. Additional physical effects to such simple chromosome models, such as enthalpic interactions between structural monomers or chain rigidity, are required if the collapse is to be a first-order phase transition. PMID:25692586

  11. Modelling Technique for Demonstrating Gravity Collapse Structures in Jointed Rock.

    ERIC Educational Resources Information Center

    Stimpson, B.

    1979-01-01

    Described is a base-friction modeling technique for studying the development of collapse structures in jointed rocks. A moving belt beneath weak material is designed to simulate gravity. A description is given of the model frame construction. (Author/SA)

  12. Radiation magnetohydrodynamic simulations of protostellar collapse: Low-metallicity environments

    SciTech Connect

    Tomida, Kengo

    2014-05-10

    Among many physical processes involved in star formation, radiation transfer is one of the key processes because it dominantly controls the thermodynamics. Because metallicities control opacities, they are one of the important environmental parameters that affect star formation processes. In this work, I investigate protostellar collapse in solar-metallicity and low-metallicity (Z = 0.1 Z {sub ☉}) environments using three-dimensional radiation hydrodynamic and magnetohydrodynamic simulations. Because radiation cooling in high-density gas is more effective in low-metallicity environments, first cores are colder and have lower entropies. As a result, first cores are smaller, less massive, and have shorter lifetimes in low-metallicity clouds. Therefore, first cores would be less likely to be found in low-metallicity star forming clouds. This also implies that first cores tend to be more gravitationally unstable and susceptible to fragmentation. The evolution and structure of protostellar cores formed after the second collapse weakly depend on metallicities in the spherical and magnetized models, despite the large difference in the metallicities. Because this is due to the change of the heat capacity by dissociation and ionization of hydrogen, it is a general consequence of the second collapse as long as the effects of radiation cooling are not very large during the second collapse. On the other hand, the effects of different metallicities are more significant in the rotating models without magnetic fields, because they evolve slower than other models and therefore are more affected by radiation cooling.

  13. Flux-driven simulations of turbulence collapse

    SciTech Connect

    Park, G. Y.; Kim, S. S.; Jhang, Hogun; Rhee, T.; Diamond, P. H.; Xu, X. Q.

    2015-03-15

    Using three-dimensional nonlinear simulations of tokamak turbulence, we show that an edge transport barrier (ETB) forms naturally once input power exceeds a threshold value. Profiles, turbulence-driven flows, and neoclassical coefficients are evolved self-consistently. A slow power ramp-up simulation shows that ETB transition is triggered by the turbulence-driven flows via an intermediate phase which involves coherent oscillation of turbulence intensity and E×B flow shear. A novel observation of the evolution is that the turbulence collapses and the ETB transition begins when R{sub T} > 1 at t = t{sub R} (R{sub T}: normalized Reynolds power), while the conventional transition criterion (ω{sub E×B}>γ{sub lin} where ω{sub E×B} denotes mean flow shear) is satisfied only after t = t{sub C} ( >t{sub R}), when the mean flow shear grows due to positive feedback.

  14. Structural control on karst collapse sinkhole formation

    NASA Astrophysics Data System (ADS)

    Santo, Antonio; Ascione, Alessandra; Mazzoli, Stefano; Santangelo, Nicoletta

    2013-04-01

    Collapse sinkholes owing their formation to erosion and deformation phenomena caused by subsurface karstification are widespread in the carbonate massifs of peninsular Italy. In contrast with solution dolines, which are densely distributed on the subplanar top surfaces of the carbonate massifs, the collapse sinkholes (hereinafter labelled karst collapse sinkholes) generally occur as isolated landforms and mostly affect the slopes and piedmont areas. In the latter instances, the sinkholes also affect alluvial fan conglomerates, or slope debris, overlying the carbonate rocks. We investigated the karst collapse sinkholes of the southern-central Apennines mountain belt (Italy), which is representative of a young orogenic system, characterised by recent tectonic activity and strong seismicity. The aim of the study is the identification of the causative factors which control the occurrence of such hazardous phenomena. The study was based on a regional scale analysis on sinkhole distribution in relation to the local geological-structural, geomorphological and hydrogeological contexts, and was paralleled with field analysis of some selected areas. The regional scale analysis indicates that the karst collapse sinkholes are not the mere response to the concurrence of the climatic and lithological conditions which commonly favour the development of karst processes, the occurrence of such landforms appearing strongly influenced by distinctive structural and hydrogeological conditions. In particular, a close relationship between the karst collapse sinkholes and the main extensional faults showing evidence of late Quaternary activity may be envisaged. This is inferred from the spatial distribution of the karst collapse sinkholes, which is strikingly uneven, the sinkholes generally occurring in alignments following large late Quaternary fault zones, or being clustered at the terminations of those faults. In addition, areas affected by the occurrence of groups of sinkholes, are

  15. INTERPLAY OF NEUTRINO OPACITIES IN CORE-COLLAPSE SUPERNOVA SIMULATIONS

    SciTech Connect

    Lentz, Eric J.; Mezzacappa, Anthony; Hix, W. Raphael; Messer, O. E. Bronson; Bruenn, Stephen W.

    2012-11-20

    We have conducted a series of numerical experiments using spherically symmetric, general relativistic, neutrino radiation hydrodynamics with the code Agile-BOLTZTRAN to examine the effects of modern neutrino opacities on the development of supernova simulations. We test the effects of opacities by removing opacities or by undoing opacity improvements for individual opacities and groups of opacities. We find that improvements to electron capture (EC) on nuclei, namely EC on an ensemble of nuclei using modern nuclear structure models rather than the simpler independent-particle approximation (IPA) for EC on a mean nucleus, plays the most important role during core collapse of all tested neutrino opacities. Low-energy neutrinos emitted by modern nuclear EC preferentially escape during collapse without the energy downscattering on electrons required to enhance neutrino escape and deleptonization for the models with IPA nuclear EC. During shock breakout the primary influence on the emergent neutrinos arises from non-isoenergetic scattering (NIS) on electrons. For the accretion phase, NIS on free nucleons and pair emission by e {sup +} e {sup -} annihilation have the largest impact on the neutrino emission and shock evolution. Other opacities evaluated, including nucleon-nucleon bremsstrahlung and especially neutrino-positron scattering, have little measurable impact on neutrino emission or shock dynamics. Modern treatments of nuclear EC, e {sup +} e {sup -}-annihilation pair emission, and NIS on electrons and free nucleons are critical elements of core-collapse simulations of all dimensionality.

  16. Parametric initial conditions for core-collapse supernova simulations

    NASA Astrophysics Data System (ADS)

    Suwa, Yudai; Müller, Ewald

    2016-08-01

    We investigate a method to construct parametrized progenitor models for core-collapse supernova simulations. Different from all modern core-collapse supernova studies, which rely on progenitor models from stellar evolution calculations, we follow the methodology of Baron & Cooperstein to construct initial models. Choosing parametrized spatial distributions of entropy and electron fraction as a function of mass coordinate and solving the equation of hydrostatic equilibrium, we obtain the initial density structures of our progenitor models. First, we calculate structures with parameters fitting broadly the evolutionary model s11.2 of Woosley et al. (2002). We then demonstrate the reliability of our method by performing general relativistic hydrodynamic simulations in spherical symmetry with the isotropic diffusion source approximation to solve the neutrino transport. Our comprehensive parameter study shows that initial models with a small central entropy (≲0.4 kB nucleon-1) can explode even in spherically symmetric simulations. Models with a large entropy (≳6 kB nucleon-1) in the Si/O layer have a rather large explosion energy (˜4 × 1050 erg) at the end of the simulations, which is still rapidly increasing.

  17. Numerical simulation of a collapsing bubble subject to gravity

    NASA Astrophysics Data System (ADS)

    Koukouvinis, P.; Gavaises, M.; Supponen, O.; Farhat, M.

    2016-03-01

    The present paper focuses on the simulation of the expansion and aspherical collapse of a laser-generated bubble subjected to an acceleration field and comparison of the results with instances from high-speed videos. The interaction of the liquid and gas is handled with the volume of fluid method. Compressibility effects have been included for each phase to predict the propagation of pressure waves. Initial conditions were estimated through the Rayleigh Plesset equation, based on the maximum bubble size and collapse time. The simulation predictions indicate that during the expansion the bubble shape is very close to spherical. On the other hand, during the collapse the bubble point closest to the bottom of the container develops a slightly higher collapse velocity than the rest of the bubble surface. Over time, this causes momentum focusing and leads to a positive feedback mechanism that amplifies the collapse locally. At the latest collapse stages, a jet is formed at the axis of symmetry, with opposite direction to the acceleration vector, reaching velocities of even 300 m/s. The simulation results agree with the observed bubble evolution and pattern from the experiments, obtained using high speed imaging, showing the collapse mechanism in great detail and clarity.

  18. Simulated Cytoskeletal Collapse via Tau Degradation

    PubMed Central

    Sendek, Austin; Fuller, Henry R.; Hayre, N. Robert; Singh, Rajiv R. P.; Cox, Daniel L.

    2014-01-01

    We present a coarse-grained two dimensional mechanical model for the microtubule-tau bundles in neuronal axons in which we remove taus, as can happen in various neurodegenerative conditions such as Alzheimers disease, tauopathies, and chronic traumatic encephalopathy. Our simplified model includes (i) taus modeled as entropic springs between microtubules, (ii) removal of taus from the bundles due to phosphorylation, and (iii) a possible depletion force between microtubules due to these dissociated phosphorylated taus. We equilibrate upon tau removal using steepest descent relaxation. In the absence of the depletion force, the transverse rigidity to radial compression of the bundles falls to zero at about 60% tau occupancy, in agreement with standard percolation theory results. However, with the attractive depletion force, spring removal leads to a first order collapse of the bundles over a wide range of tau occupancies for physiologically realizable conditions. While our simplest calculations assume a constant concentration of microtubule intercalants to mediate the depletion force, including a dependence that is linear in the detached taus yields the same collapse. Applying percolation theory to removal of taus at microtubule tips, which are likely to be the protective sites against dynamic instability, we argue that the microtubule instability can only obtain at low tau occupancy, from 0.06–0.30 depending upon the tau coordination at the microtubule tips. Hence, the collapse we discover is likely to be more robust over a wide range of tau occupancies than the dynamic instability. We suggest in vitro tests of our predicted collapse. PMID:25162587

  19. Numerical simulations of non-spherical bubble collapse

    PubMed Central

    JOHNSEN, ERIC; COLONIUS, TIM

    2009-01-01

    A high-order accurate shock- and interface-capturing scheme is used to simulate the collapse of a gas bubble in water. In order to better understand the damage caused by collapsing bubbles, the dynamics of the shock-induced and Rayleigh collapse of a bubble near a planar rigid surface and in a free field are analysed. Collapse times, bubble displacements, interfacial velocities and surface pressures are quantified as a function of the pressure ratio driving the collapse and of the initial bubble stand-off distance from the wall; these quantities are compared to the available theory and experiments and show good agreement with the data for both the bubble dynamics and the propagation of the shock emitted upon the collapse. Non-spherical collapse involves the formation of a re-entrant jet directed towards the wall or in the direction of propagation of the incoming shock. In shock-induced collapse, very high jet velocities can be achieved, and the finite time for shock propagation through the bubble may be non-negligible compared to the collapse time for the pressure ratios of interest. Several types of shock waves are generated during the collapse, including precursor and water-hammer shocks that arise from the re-entrant jet formation and its impact upon the distal side of the bubble, respectively. The water-hammer shock can generate very high pressures on the wall, far exceeding those from the incident shock. The potential damage to the neighbouring surface is quantified by measuring the wall pressure. The range of stand-off distances and the surface area for which amplification of the incident shock due to bubble collapse occurs is determined. PMID:19756233

  20. Collapse structures within a hydrogeothermal carbonate aquifer

    NASA Astrophysics Data System (ADS)

    von Hartmann, Hartwig; Buness, Hermann; Musmann, Patrick; Schulz, Rüdiger

    2010-05-01

    In hydrogeothermal projects karst is of special interest. In the vicinity of production and injection wells karst allows for a high hydraulic transmissivity. The solution process increases porosity and in the extreme leads to the formation of caves. There is no direct evidence by seismic methods to detect such processes, without well control. Increased porosity increase the impedance contrast to adjacent layers and leads to higher seismic amplitudes. It is questionable, whether caves still exist at a depth of more than 3000m. However, breccia caused by collapsed caves, also has higher porosities and should show high amplitude anomalies. The Bavarian Molasse basin is one of most prospective hydrogeothermal provinces in Germany. An Upper Jurassic carbonate platform comprises the potential geothermal aquifer. Seismic data shows circular depressions at the top of the carbonate layer. Underneath the depressions high amplitude anomalies can be found. These features are interpreted as collapse structures within the carbonate platform. Pulldown effects at the base of the carbonate platform are caused by decreasing seismic velocity within the disturbed zone. Several of such features line up along prominent fault lineaments. At the beginning of the basin development within Mid-Tertiary times the platform has been covered by relative thin layers of shale and clastic sediments. During this time the platform has been affected by small scale tectonic movements. This has established a topography, which could have induced the formation of karst. Larger caves collapsed during the ongoing basin development and resulted in the circular depressions. The process ceased during Rupelian, as can be deduced from seismic data.

  1. Simulation of the collapse and dissipation of Langmuir wave packets

    NASA Technical Reports Server (NTRS)

    Newman, D. L.; Winglee, R. M.; Robinson, P. A.; Glanz, J.; Goldman, M. V.

    1990-01-01

    Particle-in-cell (PIC) simulations and Zakharov's partial differential equations (PDEs) are used to investigate the collapse of isolated Langmuir wave packets in two dimensions. Collapse thresholds are determined numerically, and the roles of enhanced Langmuir wave damping and nonlinearities not included in the standard Zakharov equations are discussed. The Langmuir wave and ion dynamics in PIC simulations are compared with the predictions of PDE simulations incorporating enhanced Langmuir damping. Electron heating and coherent acceleration in the PIC simulations are discussed and compared with predictions of the transit-time theory.

  2. MHD Simulations of Core Collapse Supernovae with Cosmos++

    NASA Astrophysics Data System (ADS)

    Akiyama, Shizuka; Salmonson, Jay

    2010-10-01

    We performed 2D, axisymmetric, MHD simulations with Cosmos++ in order to examine the growth of the magnetorotational instability (MRI) in core-collapse supernovae. We have initialized a non-rotating 15 Msolar progenitor, infused with differential rotation and poloidal magnetic fields. The collapse of the iron core is simulated with the Shen EOS, and the parametric Ye and entropy evolution. The wavelength of the unstable mode in the post-collapse environment is expected to be only ~200 m. In order to achieve the fine spatial resolution requirement, we employed remapping technique after the iron core has collapsed and bounced. The MRI unstable region appears near the equator and angular momentum and entropy are transported outward. Higher resolution remap run display more vigorous overturns and stronger transport of angular momentum and entropy. Our results are in agreement with the earlier work by Akiyama et al. [1] and Obergaulinger et al. [2].

  3. Plasticity-mediated collapse and recrystallization in hollow copper nanowires: a molecular dynamics simulation.

    PubMed

    Dutta, Amlan; Raychaudhuri, Arup Kumar; Saha-Dasgupta, Tanusri

    2016-01-01

    We study the thermal stability of hollow copper nanowires using molecular dynamics simulation. We find that the plasticity-mediated structural evolution leads to transformation of the initial hollow structure to a solid wire. The process involves three distinct stages, namely, collapse, recrystallization and slow recovery. We calculate the time scales associated with different stages of the evolution process. Our findings suggest a plasticity-mediated mechanism of collapse and recrystallization. This contradicts the prevailing notion of diffusion driven transport of vacancies from the interior to outer surface being responsible for collapse, which would involve much longer time scales as compared to the plasticity-based mechanism.

  4. Plasticity-mediated collapse and recrystallization in hollow copper nanowires: a molecular dynamics simulation

    PubMed Central

    Raychaudhuri, Arup Kumar; Saha-Dasgupta, Tanusri

    2016-01-01

    Summary We study the thermal stability of hollow copper nanowires using molecular dynamics simulation. We find that the plasticity-mediated structural evolution leads to transformation of the initial hollow structure to a solid wire. The process involves three distinct stages, namely, collapse, recrystallization and slow recovery. We calculate the time scales associated with different stages of the evolution process. Our findings suggest a plasticity-mediated mechanism of collapse and recrystallization. This contradicts the prevailing notion of diffusion driven transport of vacancies from the interior to outer surface being responsible for collapse, which would involve much longer time scales as compared to the plasticity-based mechanism. PMID:26977380

  5. 3. View of collapsed structure (type A) next to type ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    3. View of collapsed structure (type A) next to type B structure, facing east-northeast - Nevada Test Site, Japanese Village, Area 4, Yucca Flat, 4-04 Road near Rainier Mesa Road, Mercury, Nye County, NV

  6. Numerical Simulations of Silverpit Crater Collapse

    NASA Technical Reports Server (NTRS)

    Collins, G. S.; Ivanov, B. A.; Turtle, E. P.; Melosh, H. J.

    2003-01-01

    The Silverpit crater is a recently discovered, 60-65 Myr old complex crater, which lies buried beneath the North Sea, about 150 km east of Britain. High-resolution images of Silverpit's subsurface structure, provided by three-dimensional seismic reflection data, reveal an inner-crater morphology similar to that expected for a 5-8 km diameter terrestrial crater. The crater walls show evidence of terrace-style slumping and there is a distinct central uplift, which may have produced a central peak in the pristine crater morphology. However, Silverpit is not a typical 5-km diameter terrestrial crater, because it exhibits multiple, concentric rings outside the main cavity. External concentric rings are normally associated with much larger impact structures, for example Chicxulub on Earth, or Orientale on the Moon. Furthermore, external rings associated with large impacts on the terrestrial planets and moons are widely-spaced, predominantly inwardly-facing, asymmetric scarps. However, the seismic data show that the external rings at Silverpit represent closely-spaced, concentric faultbound graben, with both inwardly and outwardly facing fault-scarps. This type of multi-ring structure directly analogous to the Valhalla-type multi-ring basins found on the icy satellites. Thus, the presence and style of the multiple rings at Silverpit is surprising given both the size of the crater and its planetary setting. A further curiosity of the Silverpit structure is that the external concentric rings appear to be extensional features on the West side of the crater and compressional features on the East side. The crater also lies in a local depression, thought to be created by postimpact movement of a salt layer buried beneath the crater.

  7. Numerical Simulations of Silverpit Crater Collapse

    NASA Technical Reports Server (NTRS)

    Collins, G. S.; Turtle, E. P.; Melosh, H. J.

    2003-01-01

    The Silverpit crater is a recently discovered, 60-65 Myr old complex crater, which lies buried beneath the North Sea, about 150 km east of Britain. High-resolution images of Silverpit's subsurface structure, provided by three-dimensional seismic reflection data, reveal an inner-crater morphology similar to that expected for a 5-8 km diameter terrestrial crater. The crater walls show evidence of terracestyle slumping and there is a distinct central uplift, which may have produced a central peak in the pristine crater morphology. However, Silverpit is not a typical 5-km diameter terrestrial crater, because it exhibits multiple, concentric rings outside the main cavity. External concentric rings are normally associated with much larger impact structures, for example Chicxulub on Earth, or Orientale on the Moon. Furthermore, external rings associated with large impacts on the terrestrial planets and moons are widely-spaced, predominantly inwardly-facing, asymmetric scarps. However, the seismic data show that the external rings at Silverpit represent closely-spaced, concentric fault-bound graben, with both inwardly and outwardly facing faults-carps. This type of multi-ring structure is directly analogous to the Valhalla-type multi-ring basins found on the icy satellites. Thus, the presence and style of the multiple rings at Silverpit is surprising given both the size of the crater and its planetary setting.

  8. Interplay of Neutrino Opacities in Core-collapse Supernova Simulations

    SciTech Connect

    Lentz, Eric J; Mezzacappa, Anthony; Messer, Bronson; Hix, William Raphael; Bruenn, S. W.

    2012-01-01

    We have conducted a series of numerical experiments using spherically symmetric, general relativistic, neutrino radiation hydrodynamics with the code Agile-BOLTZTRAN to examine the effects of including, and improving, the calculation of neutrino opacities on the development of supernova simulations by removing, or replacing, each opacity individually, or removing opacities in groups. We find that during core collapse improvements to electron capture (EC) on nuclei, namely EC on an ensemble of nuclei based on the hybrid model, relative to the simpler independent-particle approximation (IPA) for a mean nucleus, plays the most important role of all tested neutrino opacities. Low-energy neutrinos emitted by nuclear EC preferentially escape during collapse leading to larger deleptonization of the collapsing core, without the energy downscattering via non-isoenergetic scattering (NIS) on electrons required for the models with IPA nuclear EC. During shock breakout the primary influence on the emergent neutrinos arises from NIS on electrons. For the accretion phase NIS on free nucleons and pair emission by $e^+e^-$-annihilation have the largest impact on the neutrino emission and shock evolution. Other opacities evaluated including nucleon-nucleon bremsstrahlung and especially neutrino-positron scattering have little measurable impact on neutrino emission or shock dynamics. Modern treatments of nuclear electron capture, $e^+e^-$-annihilation pair emission, and non-isoenergetic scattering on electrons and free nucleons are critical elements of core-collapse simulations of all dimensionality.

  9. PROBABILISTIC STRUCTURAL RESPONSE OF STRUCTURE UNDER COLLAPSE LOADING

    SciTech Connect

    J. PEPIN; E. RODRIGUEZ; ET AL

    2001-01-05

    Engineers at Los Alamos National Laboratory (LANL) are currently developing the capability to provide a reliability-based structural evaluation technique for performing weapon reliability assessments. To enhance the analyst's confidence with these new methods, an integrated experiment and analysis project has been developed. The uncertainty associated with the collapse response of commercially available spherical marine float is evaluated with the aid of the non-linear explicit dynamics code DYNA3D (Whirley and Engelmann 1988) coupled with the probabilistic code NESSUS (Numerical Evaluation of Stochastic Structures Under Stress) (Thacker et al. 1998). Variations in geometric shape parameters and uncertainties in material parameters are characterized and included in the probabilistic model.

  10. 30. DETAIL OF COLLAPSED BRIDGE NO. 14 SUSPENSION STRUCTURE. LOOKING ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    30. DETAIL OF COLLAPSED BRIDGE NO. 14 SUSPENSION STRUCTURE. LOOKING SOUTHWEST. - Greenville Yard, Transfer Bridge System, Port of New York/New Jersey, Upper New York Bay, Jersey City, Hudson County, NJ

  11. 5. TIP TOP MINE. EAST SIDE OF STRUCTURE WITH COLLAPSED ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    5. TIP TOP MINE. EAST SIDE OF STRUCTURE WITH COLLAPSED ADIT. CAMERA POINTED WEST. - Florida Mountain Mining Sites, Tip Top Mine, West face Florida Mountain, approximately 150 feet below summit, Silver City, Owyhee County, ID

  12. Computational Astrophysics at the Bleeding Edge: Simulating Core Collapse Supernovae

    NASA Astrophysics Data System (ADS)

    Mezzacappa, Anthony

    2013-04-01

    Core collapse supernovae are the single most important source of elements in the Universe, dominating the production of elements between oxygen and iron and likely responsible for half the elements heavier than iron. They result from the death throes of massive stars, beginning with stellar core collapse and the formation of a supernova shock wave that must ultimately disrupt such stars. Past, first-principles models most often led to the frustrating conclusion the shock wave stalls and is not revived, at least given the physics included in the models. However, recent progress in the context of two-dimensional, first-principles supernova models is reversing this trend, giving us hope we are on the right track toward a solution of one of the most important problems in astrophysics. Core collapse supernovae are multi-physics events, involving general relativity, hydrodynamics and magnetohydrodynamics, nuclear burning, and radiation transport in the form of neutrinos, along with a detailed nuclear physics equation of state and neutrino weak interactions. Computationally, simulating these catastrophic stellar events presents an exascale computing challenge. I will discuss past models and milestones in core collapse supernova theory, the state of the art, and future requirements. In this context, I will present the results and plans of the collaboration led by ORNL and the University of Tennessee.

  13. Gravitational wave extraction in simulations of rotating stellar core collapse

    SciTech Connect

    Reisswig, C.; Ott, C. D.; Sperhake, U.; Schnetter, E.

    2011-03-15

    We perform simulations of general relativistic rotating stellar core collapse and compute the gravitational waves (GWs) emitted in the core-bounce phase of three representative models via multiple techniques. The simplest technique, the quadrupole formula (QF), estimates the GW content in the spacetime from the mass-quadrupole tensor only. It is strictly valid only in the weak-field and slow-motion approximation. For the first time, we apply GW extraction methods in core collapse that are fully curvature based and valid for strongly radiating and highly relativistic sources. These techniques are not restricted to weak-field and slow-motion assumptions. We employ three extraction methods computing (i) the Newman-Penrose (NP) scalar {Psi}{sub 4}, (ii) Regge-Wheeler-Zerilli-Moncrief master functions, and (iii) Cauchy-characteristic extraction (CCE) allowing for the extraction of GWs at future null infinity, where the spacetime is asymptotically flat and the GW content is unambiguously defined. The latter technique is the only one not suffering from residual gauge and finite-radius effects. All curvature-based methods suffer from strong nonlinear drifts. We employ the fixed-frequency integration technique as a high-pass waveform filter. Using the CCE results as a benchmark, we find that finite-radius NP extraction yields results that agree nearly perfectly in phase, but differ in amplitude by {approx}1%-7% at core bounce, depending on the model. Regge-Wheeler-Zerilli-Moncrief waveforms, while, in general, agreeing in phase, contain spurious high-frequency noise of comparable amplitudes to those of the relatively weak GWs emitted in core collapse. We also find remarkably good agreement of the waveforms obtained from the QF with those obtained from CCE. The results from QF agree very well in phase and systematically underpredict peak amplitudes by {approx}5%-11%, which is comparable to the NP results and is certainly within the uncertainties associated with core collapse

  14. Relativistic MHD simulations of stellar core collapse and magnetars

    NASA Astrophysics Data System (ADS)

    Font, José A.; Cerdá-Durán, Pablo; Gabler, Michael; Müller, Ewald; Stergioulas, Nikolaos

    2011-02-01

    We present results from simulations of magneto-rotational stellar core collapse along with Alfvén oscillations in magnetars. These simulations are performed with the CoCoA/CoCoNuT code, which is able to handle ideal MHD flows in dynamical spacetimes in general relativity. Our core collapse simulations highlight the importance of genuine magnetic effects, like the magneto-rotational instability, for the dynamics of the flow. For the modelling of magnetars we use the anelastic approximation to general relativistic MHD, which allows for an effective suppression of fluid modes and an accurate description of Alfvén waves. We further compute Alfvén oscillation frequencies along individual magnetic field lines with a semi-analytic approach. Our work confirms previous results based on perturbative approaches regarding the existence of two families of quasi-periodic oscillations (QPOs), with harmonics at integer multiples of the fundamental frequency. Additional material is presented in the accompanying contribution by Gabler et al (2010b) in these proceedings.

  15. Numerical simulations and analytical studies of collapsing spheres

    NASA Astrophysics Data System (ADS)

    Foster, Prudence Nichols

    We investigate the spherical self-gravitating collapse of two scenarios. In the first, used to study star formation, we assume the gas remains isothermal. In the second, used in cooling flow studies, we assume the gas is radiatively cooling. In both cases, we compare numerical hydrodynamic evolutions with analytical solutions. In the star formation problem our simulations begin close to hydrostatic equilibrium. For initial conditions with a central density plateau, supersonic infall velocities develop. At core formation, near the origin, the central density diverges approaching an r-2 profile, and the infall velocity approaches -3.3 times the speed of sound. These are characteristics of the Larson Penston self-similar solution, although in the analytical solution these conditions would apply at all radii. After core formation, these initial conditions lead to a decreasing mass accretion rate. Other initial configurations with larger initial outer cloud radii to core radius ratios, i.e. in excess of 20, will develop constant mass accretion rates after core formation. This agrees with the self-similar solutions developed by Shu. Assuming optical transparency, we calculate line profiles for the computed collapse and find that the supersonic velocities do affect the line profiles near the time of core formation. The second problem we address is radiatively cooling self-gravitating flows. We find a self-similar solution that describes the flow, with characteristics in common with the gravothermal catastrophe studied in the context of globular clusters. Our analysis applies to the early transitional stage of cluster cooling flows, as the gas evolves from a static medium to a steady state inflow. The self-similar solution incorporates a power law cooling term which is inversely proportional to rho2 Tlamda;if lambda is less than 1 the central temperature increases with time. This is confirmed with numerical simulations for lambda less than or equal to -0.5 that have

  16. 26. DETAIL OF STRUCTURAL COLLAPSE OF TOP FLOOR OF MILL, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    26. DETAIL OF STRUCTURAL COLLAPSE OF TOP FLOOR OF MILL, ABOVE ORE BIN, LOOKING WEST FROM TOP OF STAIRWAY IN CA-290-25. THE PIPE AT CENTER WAS USED TO SPREAD CRUSHED ORE COMING FROM THE JAW CRUSHER EVENLY TO ALL AREA OF THE ORE BIN BELOW. - Skidoo Mine, Park Route 38 (Skidoo Road), Death Valley Junction, Inyo County, CA

  17. Collapse of a Liquid Column: Numerical Simulation and Experimental Validation

    NASA Astrophysics Data System (ADS)

    Cruchaga, Marcela A.; Celentano, Diego J.; Tezduyar, Tayfun E.

    2007-03-01

    This paper is focused on the numerical and experimental analyses of the collapse of a liquid column. The measurements of the interface position in a set of experiments carried out with shampoo and water for two different initial column aspect ratios are presented together with the corresponding numerical predictions. The experimental procedure was found to provide acceptable recurrence in the observation of the interface evolution. Basic models describing some of the relevant physical aspects, e.g. wall friction and turbulence, are included in the simulations. Numerical experiments are conducted to evaluate the influence of the parameters involved in the modeling by comparing the results with the data from the measurements. The numerical predictions reasonably describe the physical trends.

  18. Symmetry energy impact in simulations of core-collapse supernovae

    NASA Astrophysics Data System (ADS)

    Fischer, Tobias; Hempel, Matthias; Sagert, Irina; Suwa, Yudai; Schaffner-Bielich, Jürgen

    2014-02-01

    We present a review of a broad selection of nuclear matter equations of state (EOSs) applicable in core-collapse supernova studies. The large variety of nuclear matter properties, such as the symmetry energy, which are covered by these EOSs leads to distinct outcomes in supernova simulations. Many of the currently used EOS models can be ruled out by nuclear experiments, nuclear many-body calculations, and observations of neutron stars. In particular the two classical supernova EOS describe neutron matter poorly. Nevertheless, we explore their impact in supernova simulations since they are commonly used in astrophysics. They serve as extremely soft and stiff representative nuclear models. The corresponding supernova simulations represent two extreme cases, e.g., with respect to the protoneutron star (PNS) compactness and shock evolution. Moreover, in multi-dimensional supernova simulations EOS differences have a strong effect on the explosion dynamics. Because of the extreme behaviors of the classical supernova EOSs we also include DD2, a relativistic mean field EOS with density-dependent couplings, which is in satisfactory agreement with many current nuclear and observational constraints. This is the first time that DD2 is applied to supernova simulations and compared with the classical supernova EOS. We find that the overall behaviour of the latter EOS in supernova simulations lies in between the two extreme classical EOSs. As pointed out in previous studies, we confirm the impact of the symmetry energy on the electron fraction. Furthermore, we find that the symmetry energy becomes less important during the post-bounce evolution, where conversely the symmetric part of the EOS becomes increasingly dominating, which is related to the high temperatures obtained. Moreover, we study the possible impact of quark matter at high densities and light nuclear clusters at low and intermediate densities.

  19. Simulation of bubble expansion and collapse in the vicinity of a free surface

    NASA Astrophysics Data System (ADS)

    Koukouvinis, P.; Gavaises, M.; Supponen, O.; Farhat, M.

    2016-05-01

    The present paper focuses on the numerical simulation of the interaction of laser-generated bubbles with a free surface, including comparison of the results with instances from high-speed videos of the experiment. The Volume Of Fluid method was employed for tracking liquid and gas phases while compressibility effects were introduced with appropriate equations of state for each phase. Initial conditions of the bubble pressure were estimated through the traditional Rayleigh Plesset equation. The simulated bubble expands in a non-spherically symmetric way due to the interference of the free surface, obtaining an oval shape at the maximum size. During collapse, a jet with mushroom cap is formed at the axis of symmetry with the same direction as the gravity vector, which splits the initial bubble to an agglomeration of toroidal structures. Overall, the simulation results are in agreement with the experimental images, both quantitatively and qualitatively, while pressure waves are predicted both during the expansion and the collapse of the bubble. Minor discrepancies in the jet velocity and collapse rate are found and are attributed to the thermodynamic closure of the gas inside the bubble.

  20. Landscape structure and the genetic effects of a population collapse.

    PubMed

    Caplins, Serena A; Gilbert, Kimberly J; Ciotir, Claudia; Roland, Jens; Matter, Stephen F; Keyghobadi, Nusha

    2014-12-01

    Both landscape structure and population size fluctuations influence population genetics. While independent effects of these factors on genetic patterns and processes are well studied, a key challenge is to understand their interaction, as populations are simultaneously exposed to habitat fragmentation and climatic changes that increase variability in population size. In a population network of an alpine butterfly, abundance declined 60-100% in 2003 because of low over-winter survival. Across the network, mean microsatellite genetic diversity did not change. However, patch connectivity and local severity of the collapse interacted to determine allelic richness change within populations, indicating that patch connectivity can mediate genetic response to a demographic collapse. The collapse strongly affected spatial genetic structure, leading to a breakdown of isolation-by-distance and loss of landscape genetic pattern. Our study reveals important interactions between landscape structure and temporal demographic variability on the genetic diversity and genetic differentiation of populations. Projected future changes to both landscape and climate may lead to loss of genetic variability from the studied populations, and selection acting on adaptive variation will likely occur within the context of an increasing influence of genetic drift.

  1. Investigation of structural collapse in unidirectionally freeze cast collagen scaffolds.

    PubMed

    Clearfield, Drew; Wei, Mei

    2016-01-01

    Though unidirectional freeze casting is a facile method for the production of structurally anisotropic biomedical scaffolds, challenges exist in optimizing the drying process that are often overlooked. In particular, structural collapse may occur if the material's frozen-state glass transition temperature (Tg') is exceeded. It was discovered that unidirectionally freeze cast collagen matrices were highly deformed following lyophilization, rendering them incapable of further use. In this study, modulated differential scanning calorimetry was performed to identify Tg's of unidirectionally freeze cast collagen scaffolds, and product temperatures during sublimation were recorded. It was observed that cast matrices from 0.5 to 0.05 M acetic acid (HAc) sublimed at a lyophilizer shelf temperature of -25 °C underwent structural collapse and exceeded their Tg's for the majority of the drying cycle. The use of a low pH suspension (0.5 M HAc) promoted the formation of a non-porous surface, which in turn contributed to the increase of the product temperature above its Tg' during drying. This study has revealed that use of a low shelf temperature (-40 °C) and a low HAc concentration (0.05 M) is effective in maintaining product temperatures under Tg' thereby preventing collapse in unidirectionally freeze cast collagen scaffolds.

  2. Investigation of structural collapse in unidirectionally freeze cast collagen scaffolds.

    PubMed

    Clearfield, Drew; Wei, Mei

    2016-01-01

    Though unidirectional freeze casting is a facile method for the production of structurally anisotropic biomedical scaffolds, challenges exist in optimizing the drying process that are often overlooked. In particular, structural collapse may occur if the material's frozen-state glass transition temperature (Tg') is exceeded. It was discovered that unidirectionally freeze cast collagen matrices were highly deformed following lyophilization, rendering them incapable of further use. In this study, modulated differential scanning calorimetry was performed to identify Tg's of unidirectionally freeze cast collagen scaffolds, and product temperatures during sublimation were recorded. It was observed that cast matrices from 0.5 to 0.05 M acetic acid (HAc) sublimed at a lyophilizer shelf temperature of -25 °C underwent structural collapse and exceeded their Tg's for the majority of the drying cycle. The use of a low pH suspension (0.5 M HAc) promoted the formation of a non-porous surface, which in turn contributed to the increase of the product temperature above its Tg' during drying. This study has revealed that use of a low shelf temperature (-40 °C) and a low HAc concentration (0.05 M) is effective in maintaining product temperatures under Tg' thereby preventing collapse in unidirectionally freeze cast collagen scaffolds. PMID:26676861

  3. Landscape structure and the genetic effects of a population collapse

    PubMed Central

    Caplins, Serena A.; Gilbert, Kimberly J.; Ciotir, Claudia; Roland, Jens; Matter, Stephen F.; Keyghobadi, Nusha

    2014-01-01

    Both landscape structure and population size fluctuations influence population genetics. While independent effects of these factors on genetic patterns and processes are well studied, a key challenge is to understand their interaction, as populations are simultaneously exposed to habitat fragmentation and climatic changes that increase variability in population size. In a population network of an alpine butterfly, abundance declined 60–100% in 2003 because of low over-winter survival. Across the network, mean microsatellite genetic diversity did not change. However, patch connectivity and local severity of the collapse interacted to determine allelic richness change within populations, indicating that patch connectivity can mediate genetic response to a demographic collapse. The collapse strongly affected spatial genetic structure, leading to a breakdown of isolation-by-distance and loss of landscape genetic pattern. Our study reveals important interactions between landscape structure and temporal demographic variability on the genetic diversity and genetic differentiation of populations. Projected future changes to both landscape and climate may lead to loss of genetic variability from the studied populations, and selection acting on adaptive variation will likely occur within the context of an increasing influence of genetic drift. PMID:25320176

  4. Simulation of thick-walled submarine pipeline collapse under bending and hydrostatic pressure

    SciTech Connect

    Al-Sharif, A.M.; Preston, R.

    1996-12-31

    The problem of submarine pipeline buckling or collapse as a result of bending and external pressure is investigated by numerical modeling using finite element analysis. The model takes into account the initial variability of material properties, the effect of cold-work on the pipe material properties and initial geometric imperfections. It is capable of simulating the nonlinear behavior, and structural instability due to the combined effects of bending and pressure. The solution algorithm and verification against experimental results are presented. In addition, a deterministic model for collapse under combined pressure and bending based on measured stress-strain behavior and pipe geometry is derived. Results from both finite element and deterministic models for different parameter sensitivities are examined.

  5. Relativistic structure, stability, and gravitational collapse of charged neutron stars

    SciTech Connect

    Ghezzi, Cristian R.

    2005-11-15

    Charged stars have the potential of becoming charged black holes or even naked singularities. We present a set of numerical solutions of the Tolman-Oppenheimer-Volkov equations that represents spherical charged compact stars in hydrostatic equilibrium. The stellar models obtained are evolved forward in time integrating the Einstein-Maxwell field equations. We assume an equation of state of a neutron gas at zero temperature. The charge distribution is taken as being proportional to the rest mass density distribution. The set of solutions present an unstable branch, even with charge-to-mass ratios arbitrarily close to the extremum case. We perform a direct check of the stability of the solutions under strong perturbations and for different values of the charge-to-mass ratio. The stars that are in the stable branch oscillate and do not collapse, while models in the unstable branch collapse directly to form black holes. Stars with a charge greater than or equal to the extreme value explode. When a charged star is suddenly discharged, it does not necessarily collapse to form a black hole. A nonlinear effect that gives rise to the formation of a shell of matter (in supermassive stars), is negligible in the present simulations. The results are in agreement with the third law of black hole thermodynamics and with the cosmic censorship conjecture.

  6. Collapse of Insect Gut Symbiosis under Simulated Climate Change

    PubMed Central

    Kikuchi, Yoshitomo; Tada, Akiyo; Musolin, Dmitry L.; Hari, Nobuhiro; Hosokawa, Takahiro; Fujisaki, Kenji

    2016-01-01

    ABSTRACT Global warming impacts diverse organisms not only directly but also indirectly via other organisms with which they interact. Recently, the possibility that elevated temperatures resulting from global warming may substantially affect biodiversity through disrupting mutualistic/parasitic associations has been highlighted. Here we report an experimental demonstration that global warming can affect a pest insect via suppression of its obligate bacterial symbiont. The southern green stinkbug Nezara viridula depends on a specific gut bacterium for its normal growth and survival. When the insects were reared inside or outside a simulated warming incubator wherein temperature was controlled at 2.5°C higher than outside, the insects reared in the incubator exhibited severe fitness defects (i.e., retarded growth, reduced size, yellowish body color, etc.) and significant reduction of symbiont population, particularly in the midsummer season, whereas the insects reared outside did not. Rearing at 30°C or 32.5°C resulted in similar defective phenotypes of the insects, whereas no adult insects emerged at 35°C. Notably, experimental symbiont suppression by an antibiotic treatment also induced similar defective phenotypes of the insects, indicating that the host’s defective phenotypes are attributable not to the heat stress itself but to the suppression of the symbiont population induced by elevated temperature. These results strongly suggest that high temperature in the midsummer season negatively affects the insects not directly but indirectly via the heat-vulnerable obligate bacterial symbiont, which highlights the practical relevance of mutualism collapse in this warming world. PMID:27703075

  7. Search and rescue in collapsed structures: engineering and social science aspects.

    PubMed

    El-Tawil, Sherif; Aguirre, Benigno

    2010-10-01

    This paper discusses the social science and engineering dimensions of search and rescue (SAR) in collapsed buildings. First, existing information is presented on factors that influence the behaviour of trapped victims, particularly human, physical, socioeconomic and circumstantial factors. Trapped victims are most often discussed in the context of structural collapse and injuries sustained. Most studies in this area focus on earthquakes as the type of disaster that produces the most extensive structural damage. Second, information is set out on the engineering aspects of urban search and rescue (USAR) in the United States, including the role of structural engineers in USAR operations, training and certification of structural specialists, and safety and general procedures. The use of computational simulation to link the engineering and social science aspects of USAR is discussed. This could supplement training of local SAR groups and USAR teams, allowing them to understand better the collapse process and how voids form in a rubble pile. A preliminary simulation tool developed for this purpose is described.

  8. Ultimate collapse of offshore structures exposed to fire

    SciTech Connect

    Amdahl, J.; Eberg, E.; Holmaas, T.; Landroe, H.; Ulfsnes, M.

    1995-12-31

    A systematic validation of the computer program for analysis of mechanical response USFOS is presented. It is based upon a nonlinear finite element formulation and is capable of predicting total collapse, taking systems effects including force redistribution caused by failing members into account. For acceptance of the method it is vital that component behavior is predicted reliably. For this purpose the element formulation used is calibrated such that buckling curves for fire exposed columns and beam-column behavior are reproduced accurately. As a part of the verification of the program a laboratory test with a three dimensional frame representative of the upper part of a four-legged jacket is carried out. The structure is exposed to a gas pool fire at sea level close to one leg until total collapse takes place. A description of the test is given along with numerically predicted structural response. Some preliminary results from the experiment are also presented. Finally, the use of the integrated fire analysis system is illustrated by application to an actual offshore structure.

  9. Numerical simulations of the translation of collapsing bubbles

    NASA Astrophysics Data System (ADS)

    Igualada-Villodre, Elena; Fuster, Daniel; Rodriguez-Rodriguez, Javier

    2015-11-01

    In this work we present a numerical method developed to solve the collapse of single non-spherical bubbles in an incompressible liquid. The Gerris software is used to solve for the 3D conservation equations in both phases in a system where the total volume changes in the gas are imposed. The numerical results are used to discriminate various bubble collapse regimes as a function of the collapse intensity and the strength of a non-symmetrical force (e.g. gravity). At low Weber numbers and non-zero Froude numbers, the bubble remains approximately spherical. In this regime the solution numerically obtained is shown to converge in the inviscid case to the theoretical solution. For large Weber numbers, a fast jet breaks the bubble dissipating an important part of energy during the collapse. Interestingly, it is possible to identify regimes for moderate Weber numbers where the initiation of jet formation influences its translational motion without breaking the bubble. In accordance with numerical results, experiments with bubbles generated by water electrolysis subjected to shock waves show that bubbles suffer non-spherical interface deformations. The results of this study may help to further develop medical applications using bubbles as drug-carriers.

  10. Molecular dynamics simulation of hollow thick-walled cylinder collapse

    SciTech Connect

    Nikonov, A. Yu.

    2015-10-27

    The generation and evolution of plastic deformation in a hollow single-crystal cylinder under high-rate axisymmetric loading were studied. An advantage of the proposed loading scheme is that all loading modes are applied simultaneously within the chosen crystallographic plane of the cylinder base and different strain degrees are achieved along the specimen cross section. Molecular dynamics simulation was performed to show that the achievement of a certain strain causes the formation of structural defects on the inner surface of the specimen. The obtained results can be used to explain the main plastic deformation mechanisms of crystalline solids.

  11. Unfolding of collapsed polymers in shear flow: effects of colloid banding structures in confining channels.

    PubMed

    Chen, Hsieh; Alexander-Katz, Alfredo

    2014-03-01

    Using hydrodynamic simulations, we demonstrate that confined colloidal suspensions can greatly enhance the unfolding of collapsed single polymers in flow. When colloids come in direct contact with the polymers due to the flow, the collapsed chains become flattened or elongated on the surface of the colloids, increasing the probability of forming large chain protrusions that the flow can pull out to unfold the polymers. This phenomenon may be suppressed if the colloid size is commensurate with the confining channels, where the colloids form well-defined banding structures. Here, we analyze the colloid banding structures in detail and their relation to the chain unfolding. We find that for colloid volume fractions up to 30%, the confined colloids form simple cubic (sc), hexagonal (hex), or a mixture of sc + hex structures. By directly changing the heights of the confining channels, we show that the collapsed polymers unfold the most in the mixed sc + hex structures. The diffuse (not well-defined) bands in the mixed sc + hex structures provide the highest collision probability for the colloids and the polymers, thus enhancing unfolding the most. Without colloidal suspensions, we show that the confining channels alone do not have an observable effect on the unfolding of collapsed polymers. The well-defined colloid bands also suppress the unfolding of noncollapsed polymers. In fact, the average size for noncollapsed chains is even smaller in the well-defined bands than in a channel without any colloids. The appearance of well-defined bands in this case also indicates that lift forces experienced by the polymers in confinement are negligible compared to those exerted by the colloidal band structures. Our results may be important for understanding the dynamics of mixed colloid polymer solutions.

  12. Simulating Society Transitions: Standstill, Collapse and Growth in an Evolving Network Model

    PubMed Central

    Xu, Guanghua; Yang, Junjie; Li, Guoqing

    2013-01-01

    We developed a model society composed of various occupations that interact with each other and the environment, with the capability of simulating three widely recognized societal transition patterns: standstill, collapse and growth, which are important compositions of society evolving dynamics. Each occupation is equipped with a number of inhabitants that may randomly flow to other occupations, during which process new occupations may be created and then interact with existing ones. Total population of society is associated with productivity, which is determined by the structure and volume of the society. We ran the model under scenarios such as parasitism, environment fluctuation and invasion, which correspond to different driving forces of societal transition, and obtained reasonable simulation results. This work adds to our understanding of societal evolving dynamics as well as provides theoretical clues to sustainable development. PMID:24086530

  13. Multidimensional, multiphysics simulations of core-collapse supernovae

    SciTech Connect

    Messer, Bronson; Mezzacappa, Anthony; Blondin, J. M.; Bruenn, S. W.; Hix, William Raphael

    2008-01-01

    CHIMERA is a multi-dimensional radiation hydrodynamics code designed to study core-collapse supernovae. The code is made up of three essentially independent parts: a hydrodynamics module, a nuclear burning module, and a neutrino transport solver combined within an operator-split approach. We review the code s architecture and some recently improved implementations used in the code. We also briefly discuss preliminary results obtained with the code in three spatial dimensions.

  14. Multidimensional, multiphysics simulations of core-collapse supernovae

    SciTech Connect

    Messer, Bronson; Mezzacappa, Anthony; Blondin, J. M.; Bruenn, S. W.; Hix, William Raphael

    2008-01-01

    CHIMERA is a multi-dimensional radiation hydrodynamics code designed to study core-collapse supernovae. The code is made up of three essentially independent parts: a hydrodynamics module, a nuclear burning module, and a neutrino transport solver combined within an operator-split approach. We review the code's architecture and some recently improved implementations used in the code. We also briefly discuss preliminary results obtained with the code in three spatial dimensions.

  15. Confrontation of top-hat spherical collapse against dark halos from cosmological N-body simulations

    NASA Astrophysics Data System (ADS)

    Suto, Daichi; Kitayama, Tetsu; Osato, Ken; Sasaki, Shin; Suto, Yasushi

    2016-02-01

    The top-hat spherical collapse model (TSC) is one of the most fundamental analytical frameworks to describe the non-linear growth of cosmic structure. TSC has motivated, and been widely applied in, various investigations even in the current era of precision cosmology. While numerous studies exist to examine its validity against numerical simulations in a statistical fashion, there are few analyses which compare the TSC dynamics in an individual object-wise basis, which is what we attempt in the present paper. We extract 100 halos at z = 0 from a cosmological N-body simulation according to the conventional TSC criterion for the spherical over-density. Then we trace back their spherical counterparts at earlier epochs. Just prior to the turn-around epoch of the halos, their dynamics are well approximated by TSC, but their turn-around epochs are systematically delayed and the virial radii are larger by ˜20% on average relative to the TSC predictions. We find that this systematic deviation can mainly be ascribed to the non-uniformity/inhomogeneity of dark matter density profiles and the non-zero velocity dispersions, both of which are neglected in TSC. In particular, the inside-out collapse and shell-crossing of dark matter halos play an important role in generating the significant velocity dispersion. The implications of the present result are briefly discussed.

  16. Structure and Dynamics of Shock-Induced Nanobubble Collapse in Water

    NASA Astrophysics Data System (ADS)

    Vedadi, Mohammad; Choubey, Amit; Nomura, Ken-Ichi; Kalia, Rajiv; Nakano, Aiichiro; Vashishta, Priya; van Duin, Adri

    2011-03-01

    Structure of water under shock and shock-induced collapse of nanobubbles in water are investigated with molecular dynamics simulations based on a reactive force field. Shock induces dramatic structural changes, including an ice-VII-like structural motif at a particle velocity of 1 km/s. The incipient ice VII formation and the calculated Hugoniot curve are in good agreement with experimental results. In the presence of a nanobubble, we observe a focused nanojet at the onset of nanobubble shrinkage and a secondary shock wave upon nanobubble collapse. The secondary shock wave propagates spherically backwards and induces high pressure as it propagates. Both the propagation velocity and the induced pressure are larger than those of the primary shock. We explored effects of nanobubble radius and shock amplitude on nanojet formation. The nanojet size increases by increasing particle velocity but the effect of increasing radius is more significant. The jet length scales linearly with the nanobubble radius, as observed in experiments on micron-to-millimeter size bubbles. Shock-induced collapse of a nanobubble in the vicinity of a cell membrane creates a transient nanopore when the nanojet impacts the membrane. Transient cell poration has potential applications in drug delivery.

  17. Platinum-induced structural collapse in layered oxide polycrystalline films

    SciTech Connect

    Wang, Jianlin; Liu, Changhui; Huang, Haoliang; Fu, Zhengping; Peng, Ranran E-mail: yllu@ustc.edu.cn; Zhai, Xiaofang; Lu, Yalin E-mail: yllu@ustc.edu.cn

    2015-03-30

    Effect of a platinum bottom electrode on the SrBi{sub 5}Fe{sub 1−x}Co{sub x}Ti{sub 4}O{sub 18} layered oxide polycrystalline films was systematically studied. The doped cobalt ions react with the platinum to form a secondary phase of PtCoO{sub 2}, which has a typical Delafossite structure with a weak antiferromagnetism and an exceptionally high in-plane electrical conductivity. Formation of PtCoO{sub 2} at the interface partially consumes the cobalt dopant and leads to the structural collapsing from 5 to 4 layers, which was confirmed by X-ray diffraction and high resolution transmission electron microscopy measurements. Considering the weak magnetic contribution from PtCoO{sub 2}, the observed ferromagnetism should be intrinsic of the Aurivillius compounds. Ferroelectric properties were also indicated by the piezoresponse force microscopy. In this work, the platinum induced secondary phase at the interface was observed, which has a strong impact on Aurivillius structural configuration and thus the ferromagnetic and ferroelectric properties.

  18. THREE-DIMENSIONAL MAGNETOHYDRODYNAMICAL SIMULATIONS OF GRAVITATIONAL COLLAPSE OF A 15 M {sub sun} STAR

    SciTech Connect

    Kuroda, Takami; Umeda, Hideyuki E-mail: umeda@astron.s.u-tokyo.ac.j

    2010-12-15

    We introduce our two different newly developed, three-dimensional magnetohydrodynamical codes in detail. One of them is written in the Newtonian limit (NMHD) and the other is a fully general relativistic code (GRMHD). Both codes employ adaptive mesh refinement and, in GRMHD, the metric is evolved with the 'Baumgarte-Shapiro-Shibata-Nakamura' formalism known as the most stable method at present. We conducted several test problems and as for the first practical test, we calculated the gravitational collapse of a 15 M {sub sun} star. The main features found from our calculations are: (1) high-velocity bipolar outflow is driven from the proto-neutron star and moves along the rotational axis in strongly magnetized models, (2) a one-armed spiral structure appears, which originates from the low-|T/W| instability, and (3) by comparing the GRMHD and NMHD models, the maximum density increases about {approx}30% in GRMHD models due to the stronger gravitational effect. These features agree very well with previous studies and our codes are thus reliable for numerical simulation of gravitational collapse of massive stars.

  19. Multi-Hazard Risk Assessment of Structures Subjected to Seismic Excitation and Blast for the Limit State of Collapse

    SciTech Connect

    Asprone, D.; Jalayer, F.; Prota, A.; Manfredi, G.

    2008-07-08

    Multi-hazard approach represents a convenient way to address structural reliability of a critical infrastructure. Objective of the present paper is to present a multi-hazard methodology for evaluation of the risk associated with the limit state of collapse for a reinforced concrete (RC) structure subject to both seismic and blast threats. Blast fragility can be defined as the probability of progressive collapse given a blast event has taken place and its evaluation is here suggested via a Monte Carlo procedure, generating different possible blast configurations. For each blast scenario, the consequent damages occurring to the investigated structure are identified and an updating of the structure is then performed. The structural stability under gravity loading is then verified by employing a kinematic plastic limit analysis. The conditional probability of collapse or the blast fragility is then calculated as the mean value of the collapse indicator variable over the number of cases generated by the simulation procedure. Therefore, the seismic fragility is also determined via classical methods described elsewhere and the total risk of collapse is evaluated as the sum of blast and seismic contributions.

  20. Multi-Hazard Risk Assessment of Structures Subjected to Seismic Excitation and Blast for the Limit State of Collapse

    NASA Astrophysics Data System (ADS)

    Asprone, D.; Jalayer, F.; Prota, A.; Manfredi, G.

    2008-07-01

    Multi-hazard approach represents a convenient way to address structural reliability of a critical infrastructure. Objective of the present paper is to present a multi-hazard methodology for evaluation of the risk associated with the limit state of collapse for a reinforced concrete (RC) structure subject to both seismic and blast threats. Blast fragility can be defined as the probability of progressive collapse given a blast event has taken place and its evaluation is here suggested via a Monte Carlo procedure, generating different possible blast configurations. For each blast scenario, the consequent damages occurring to the investigated structure are identified and an updating of the structure is then performed. The structural stability under gravity loading is then verified by employing a kinematic plastic limit analysis. The conditional probability of collapse or the blast fragility is then calculated as the mean value of the collapse indicator variable over the number of cases generated by the simulation procedure. Therefore, the seismic fragility is also determined via classical methods described elsewhere and the total risk of collapse is evaluated as the sum of blast and seismic contributions.

  1. GENERAL RELATIVISTIC SIMULATIONS OF ACCRETION INDUCED COLLAPSE OF NEUTRON STARS TO BLACK HOLES

    SciTech Connect

    Giacomazzo, Bruno; Perna, Rosalba

    2012-10-10

    Neutron stars (NSs) in the astrophysical universe are often surrounded by accretion disks. Accretion of matter onto an NS may increase its mass above the maximum value allowed by its equation of state, inducing its collapse to a black hole (BH). Here we study this process for the first time, in three-dimensions, and in full general relativity. By considering three initial NS configurations, each with and without a surrounding disk (of mass {approx}7% M{sub NS}), we investigate the effect of the accretion disk on the dynamics of the collapse and its imprint on both the gravitational wave (GW) and electromagnetic (EM) signals that can be emitted by these sources. We show in particular that, even if the GW signal is similar for the accretion induced collapse (AIC) and the collapse of an NS in vacuum (and detectable only for Galactic sources), the EM counterpart could allow us to discriminate between these two types of events. In fact, our simulations show that, while the collapse of an NS in vacuum leaves no appreciable baryonic matter outside the event horizon, an AIC is followed by a phase of rapid accretion of the surviving disk onto the newly formed BH. The post-collapse accretion rates, on the order of {approx}10{sup -2} M{sub Sun} s{sup -1}, make these events tantalizing candidates as engines of short gamma-ray bursts.

  2. Recruitment collapse and population structure of the European eel shaped by local ocean current dynamics.

    PubMed

    Baltazar-Soares, Miguel; Biastoch, Arne; Harrod, Chris; Hanel, Reinhold; Marohn, Lasse; Prigge, Enno; Evans, Derek; Bodles, Kenneth; Behrens, Erik; Böning, Claus W; Eizaguirre, Christophe

    2014-01-01

    Worldwide, exploited marine fish stocks are under threat of collapse [1]. Although the drivers behind such collapses are diverse, it is becoming evident that failure to consider evolutionary processes in fisheries management can have drastic consequences on a species' long-term viability [2]. The European eel (Anguilla anguilla; Linnaeus, 1758) is no exception: not only does the steep decline in recruitment observed in the 1980s [3, 4] remain largely unexplained, the punctual detection of genetic structure also raises questions regarding the existence of a single panmictic population [5-7]. With its extended Transatlantic dispersal, pinpointing the role of ocean dynamics is crucial to understand both the population structure and the widespread decline of this species. Hence, we combined dispersal simulations using a half century of high-resolution ocean model data with population genetics tools. We show that regional atmospherically driven ocean current variations in the Sargasso Sea were the major driver of the onset of the sharp decline in eel recruitment in the beginning of the 1980s. The simulations combined with genotyping of natural coastal eel populations furthermore suggest that unexpected evidence of coastal genetic differentiation is consistent with cryptic female philopatric behavior within the Sargasso Sea. Such results demonstrate the key constraint of the variable oceanic environment on the European eel population.

  3. Recruitment collapse and population structure of the European eel shaped by local ocean current dynamics.

    PubMed

    Baltazar-Soares, Miguel; Biastoch, Arne; Harrod, Chris; Hanel, Reinhold; Marohn, Lasse; Prigge, Enno; Evans, Derek; Bodles, Kenneth; Behrens, Erik; Böning, Claus W; Eizaguirre, Christophe

    2014-01-01

    Worldwide, exploited marine fish stocks are under threat of collapse [1]. Although the drivers behind such collapses are diverse, it is becoming evident that failure to consider evolutionary processes in fisheries management can have drastic consequences on a species' long-term viability [2]. The European eel (Anguilla anguilla; Linnaeus, 1758) is no exception: not only does the steep decline in recruitment observed in the 1980s [3, 4] remain largely unexplained, the punctual detection of genetic structure also raises questions regarding the existence of a single panmictic population [5-7]. With its extended Transatlantic dispersal, pinpointing the role of ocean dynamics is crucial to understand both the population structure and the widespread decline of this species. Hence, we combined dispersal simulations using a half century of high-resolution ocean model data with population genetics tools. We show that regional atmospherically driven ocean current variations in the Sargasso Sea were the major driver of the onset of the sharp decline in eel recruitment in the beginning of the 1980s. The simulations combined with genotyping of natural coastal eel populations furthermore suggest that unexpected evidence of coastal genetic differentiation is consistent with cryptic female philopatric behavior within the Sargasso Sea. Such results demonstrate the key constraint of the variable oceanic environment on the European eel population. PMID:24374306

  4. Numerical simulations of the aspherical collapse of laser and acoustically generated bubbles.

    PubMed

    Tsiglifis, Kostas; Pelekasis, Nikos A

    2007-04-01

    The details of nonlinear axisymmetric oscillations and collapse of bubbles subject to large internal or external pressure disturbances, are studied via a boundary integral method. Weak viscous effects on the liquid side are accounted for by integrating the equations of motion across the boundary layer that is formed adjacent to the interface. Simulations of single-cavitation bubble luminescence (SCBL) and single-bubble sonoluminescence (SBSL) are performed under conditions similar to reported experimental observations, aiming at capturing the details of bubble collapse. It is shown that any small initial deviation from sphericity, modeled through a small initial elongation along the axis of symmetry, may result in the formation and impact of two counter-propagating jets during collapse of the bubble, provided the amplitude of the initial disturbance is large enough and the viscosity of the surrounding fluid is small enough. Comparison between simulations and experimental observations show that this is the case for bubbles induced via a nano-second laser pulse (SCBL) during a luminescence event. In a similar fashion, simulations show that loss of sphericity accompanied with jet formation and impact during collapse is also possible with acoustically trapped bubbles in a standing pressure wave (SBSL), due to the many afterbounces of the bubble during its collapse phase. In both cases jet impact occurs as a result of P(2) growth in the form of an afterbounce instability. When the sound amplitude is decreased or liquid viscosity is increased the intensity of the afterbounce is decreased and jet impact is suppressed. When the sound amplitude is increased jet formation is superceded by Rayleigh-Taylor instability. In the same context stable luminescence is quenched in experimental observations. In both SCBL and SBSL simulations the severity of jet impact during collapse is quite large, and its local nature quite distinct. This attests to the fact that it is an energy

  5. Field structure of collapsing wave packets in 3D strong Langmuir turbulence

    NASA Technical Reports Server (NTRS)

    Newman, D. L.; Robinson, P. A.; Goldman, M. V.

    1989-01-01

    A simple model is constructed for the electric fields in the collapsing wave packets found in 3D simulations of driven and damped isotropic strong Langmuir turbulence. This model, based on a spherical-harmonic decomposition of the electrostatic potential, accounts for the distribution of wave-packet shapes observed in the simulations, particularly the predominance of oblate wave packets. In contrast with predictions for undamped and undriven subsonic collapse of scalar fields, oblate vector-field wave packets do not flatten during collapse but, instead, remain approximately self-similar and rigid.

  6. KL4 Peptide Induces Reversible Collapse Structures on Multiple Length Scales in Model Lung Surfactant

    PubMed Central

    Holten-Andersen, Niels; Michael Henderson, J.; Walther, Frans J.; Waring, Alan J.; Ruchala, Piotr; Notter, Robert H.; Lee, Ka Yee C.

    2011-01-01

    We investigated the effects of KL4, a 21-residue amphipathic peptide approximating the overall ratio of positively charged to hydrophobic amino acids in surfactant protein B (SP-B), on the structure and collapse of dipalmitoylphosphatidylcholine and palmitoyl-oleoyl-phosphatidylglycerol monolayers. As reported in prior work on model lung surfactant phospholipid films containing SP-B and SP-B peptides, our experiments show that KL4 improves surfactant film reversibility during repetitive interfacial cycling in association with the formation of reversible collapse structures on multiple length scales. Emphasis is on exploring a general mechanistic connection between peptide-induced nano- and microscale reversible collapse structures (silos and folds). PMID:22208194

  7. Two Dimensional Simulations of Core-Collapse Supernovae with Neutrino Transport in FLASH

    NASA Astrophysics Data System (ADS)

    O'Connor, Evan; Couch, Sean

    2016-03-01

    Core-collapse supernovae are the end stage of massive star evolution and are central to many aspects of astrophysics. They are the birth site of both neutron stars and black holes and their shocks are responsible for spreading the products of stellar evolution throughout the Galaxy and regulating star formation. Despite their importance and decades of research, the precise mechanism that converts the initial implosion of the collapsing iron core to an explosion that unbinds the majority of the star is unknown. However, we know that the majority of the energy released is ultimately radiated in neutrinos and that the physics of neutrino transport and neutrino heating-among many other aspects-must be treated carefully when modelling the core-collapse supernova central engine. In this talk, I will present recent simulations of core-collapse supernovae from the FLASH hydrodynamics code. We perform two dimensional, neutrino transport simulations using several progenitors. We test the influence of general relativity by using a pseudorelativistic potential that effectively models GR. We show that the more compact protoneutron star predicted from GR increases the neutrino heating and can lead to explosions where the corresponding Newtonian simulations fail.

  8. BEAM: A finite element program for the collapse analysis of vehicle structures

    NASA Astrophysics Data System (ADS)

    Cimpoeru, S. J.

    1994-06-01

    BEAM (Beam Element Analysis with Mechanisms) is a finite element program for the analysis of the collapse of vehicle structures. BEAM can quickly estimate the collapse load and plastic hinge locations in three-dimensional thin-walled frames that would collapse in bending. Such information can be combined with separate rigid-plastic modelling to enable the large-deflection design of vehicle frameworks so that their collapse in roll-over accidents, for instance, can be prevented. One advantage of BEAM is that it allows a user to define his own experimentally or analytically determined loads and moments as failure criteria. The theory and operation of BEAM are presented and its application to the modelling of a collapsing two-dimensional frame is described.

  9. Two- and three-dimensional simulations of core-collapse supernovae with CHIMERA

    SciTech Connect

    Lentz, Eric J; Bruenn, S. W.; Harris, James A; Chertkow, Merek A; Hix, William Raphael; Mezzacappa, Anthony; Messer, Bronson; Blondin, J. M.; Marronetti, Pedro; Mauney, Christopher M; Yakunin, Konstantin

    2012-01-01

    Ascertaining the core-collapse supernova mechanism is a complex, and yet unsolved, problem dependent on the interaction of general relativity, hydrodynamics, neutrino transport, neutrino-matter interactions, and nuclear equations of state and reaction kinetics. Ab initio modeling of core-collapse supernovae and their nucleosynthetic outcomes requires care in the coupling and approximations of the physical components. We have built our multi-physics CHIMERA code for supernova modeling in 1-, 2-, and 3-D, using ray-by-ray neutrino transport, approximate general relativity, and detailed neutrino and nuclear physics. We discuss some early results from our current series of exploding 2D simulations and our work to perform computationally tractable simulations in 3D using the ``Yin--Yang'' grid.

  10. Numerical simulation of cavitation erosion on a NACA0015 hydrofoil based on bubble collapse strength

    NASA Astrophysics Data System (ADS)

    Hidalgo, V.; Luo, X.; Escaler, X.; Huang, R.; Valencia, E.

    2015-12-01

    The prediction of erosion under unsteady cavitation is crucial to prevent damage in hydraulic machinery. The present investigation deals with the numerical simulation of erosive partial cavitation around a NACA0015 hydrofoil. The study presents the calculation of the bubble collapse strength, Sb, based on the bubble potential energy to identify the surface areas with highest risk of damage. The results are obtained with a numerical scheme assuming homogeneous mixture flow, implicit LES and Zwart cavitation model. The 3D unsteady flow simulation has been solved using OpenFOAM. Python language and OpenFOAM calculator (foamCalcEx) have been used to obtain and represent Sb. The obtained results clearly show the instants of erosive bubble collapse and the affected surface areas.

  11. Three-Dimensional Magnetic Fields in Realistic Simulations of Stellar Core Collapse and Bounce

    NASA Astrophysics Data System (ADS)

    Liebendoerfer, Matthias

    2005-08-01

    The evolution of massive stars ends with an inner iron core that is unstable to gravitational collapse. Its dynamics is determined by electron capture on nuclei in the condensing matter. When the energydependent neutrino mean free path becomes short, emitted neutrinos escape in a competition between thermalization and diffusion. This process is accurately captured in spherically symmetric simulations with Boltzmann neutrino transport (e.g. Liebendoerfer et al. 2005, ApJ, 620, 840). Here, I present a simple parameterization of the comprehensive treatment of neutrino physics so that multi-dimensional simulations {of the collapse phase} can include the results of stateof- the-art neutrino transport in an efficient and accurate way (Liebendoerfer, astro-ph/0504072). With the application to the 3-D MHD simulations of Liebendoerfer, Pen, & Thompson (2005, to be published in Nucl. Phys. A), realistic three-dimensional simulations of slowly rotating collapse with magnetic fields become feasible to narrow the configuration space at bounce, i.e. at the onset of the not fully understood supernova explosion. The evolution of the magnetic field is followed for different choices of the uncertain initial values at the onset of collapse. Until a few milliseconds after bounce, a mainly compression-induced field amplification of about two orders of magnitude is found in the hot material layered around the protoneutron star. Larger magnetic fields are trapped within the protoneutron star. After bounce, the magnetic field lines entangle in the layers where convection is driven by entropy gradients. Cross-view stereograms are shown to visualize their evolution in 3-D.

  12. Numerical simulations of stellar collapse in scalar-tensor theories of gravity

    NASA Astrophysics Data System (ADS)

    Gerosa, Davide; Sperhake, Ulrich; Ott, Christian D.

    2016-07-01

    We present numerical-relativity simulations of spherically symmetric core collapse and compact-object formation in scalar-tensor theories of gravity. The additional scalar degree of freedom introduces a propagating monopole gravitational-wave mode. Detection of monopole scalar waves with current and future gravitational-wave experiments may constitute smoking gun evidence for strong-field modifications of general relativity. We collapse both polytropic and more realistic pre-supernova profiles using a high-resolution shock-capturing scheme and an approximate prescription for the nuclear equation of state. The most promising sources of scalar radiation are protoneutron stars collapsing to black holes. In case of a galactic core collapse event forming a black hole, Advanced LIGO may be able to place independent constraints on the parameters of the theory at a level comparable to current solar-system and binary-pulsar measurements. In the region of the parameter space admitting spontaneously scalarised stars, transition to configurations with prominent scalar hair before black-hole formation further enhances the emitted signal. Although a more realistic treatment of the microphysics is necessary to fully investigate the occurrence of spontaneous scalarisation of neutron star remnants, we speculate that formation of such objects could constrain the parameters of the theory beyond the current bounds obtained with solar-system and binary-pulsar experiments.

  13. Bayesian reconstruction of gravitational wave burst signals from simulations of rotating stellar core collapse and bounce

    SciTech Connect

    Roever, Christian; Bizouard, Marie-Anne; Christensen, Nelson; Dimmelmeier, Harald; Heng, Ik Siong; Meyer, Renate

    2009-11-15

    Presented in this paper is a technique that we propose for extracting the physical parameters of a rotating stellar core collapse from the observation of the associated gravitational wave signal from the collapse and core bounce. Data from interferometric gravitational wave detectors can be used to provide information on the mass of the progenitor model, precollapse rotation, and the nuclear equation of state. We use waveform libraries provided by the latest numerical simulations of rotating stellar core collapse models in general relativity, and from them create an orthogonal set of eigenvectors using principal component analysis. Bayesian inference techniques are then used to reconstruct the associated gravitational wave signal that is assumed to be detected by an interferometric detector. Posterior probability distribution functions are derived for the amplitudes of the principal component analysis eigenvectors, and the pulse arrival time. We show how the reconstructed signal and the principal component analysis eigenvector amplitude estimates may provide information on the physical parameters associated with the core collapse event.

  14. Structure of Langmuir and electromagnetic collapsing wave packets in two-dimensional strong plasma turbulence

    NASA Astrophysics Data System (ADS)

    Alinejad, H.; Robinson, P. A.; Cairns, I. H.; Skjaeraasen, O.; Sobhanian, S.

    2007-07-01

    Nucleating and collapsing wave packets relevant to electromagnetic strong plasma turbulence are studied theoretically in two dimensions. Model collapsing Langmuir and transverse potentials are constructed as superpositions of approximate eigenstates of a spherically symmetric density well. Electrostatic and electromagnetic potentials containing only components with azimuthal quantum numbers m =0, 1, 2 are found to give a good representation of the electric fields of nucleating collapsing wave packets in turbulence simulations. The length scales of these trapped states are related to the electron thermal speed ve and the length scale of the density well. It is shown analytically that the electromagnetic trapped states change with ve and that for ve≲0.17c they are delocalized, in accord with recent simulations. In this case, the Langmuir mode collapses independently, as in electrostatic plasma turbulence. For ve≳0.17c, the Langmuir and transverse modes remain coupled during collapse, with autocorrelation lengths in a constant ratio. An investigation of energy transfer to packets localized in density wells shows that the strongest power transfer to the nucleating state occurs for Langmuir waves. Energy transitions between different trapped and free states for collapsing wave packets are studied, and the transition rate from trapped Langmuir to free plane electromagnetic waves is calculated and related to the emission of electromagnetic waves at the plasma frequency.

  15. 1-D DSMC simulation of Io's atmospheric collapse and reformation during and after eclipse

    NASA Astrophysics Data System (ADS)

    Moore, C. H.; Goldstein, D. B.; Varghese, P. L.; Trafton, L. M.; Stewart, B.

    2009-06-01

    A one-dimensional Direct Simulation Monte Carlo (DSMC) model is used to examine the effects of a non-condensable species on Io's sulfur dioxide sublimation atmosphere during eclipse and just after egress. Since the vapor pressure of SO 2 is extremely sensitive to temperature, the frost-supported dayside sublimation atmosphere had generally been expected to collapse during eclipse as the surface temperature dropped. For a pure SO 2 atmosphere, however, it was found that during the first 10 min of eclipse, essentially no change in the atmospheric properties occurs at altitudes above ˜100 km due to the finite ballistic/acoustic time. Hence immediately after ingress the auroral emission morphology above 100 km should resemble that of the immediate pre-eclipse state. Furthermore, the collapse dynamics are found to be greatly altered by the presence of even a small amount of a non-condensable species which forms a diffusion layer near the surface that prevents rapid collapse. It is found that after 10 min essentially no collapse has occurred at altitudes above ˜20 km when a nominal mole fraction of non-condensable gas is present. Collapse near the surface occurs relatively quickly until a static diffusion layer many mean free paths thick of the non-condensable gas builds up which then retards further collapse of the SO 2 atmosphere. For example, for an initial surface temperature of 110 K and 35% non-condensable mole-fraction, the ratio of the SO 2 column density to the initial column density was found to be 0.73 after 10 min, 0.50 after 30 min, and 0.18 at the end of eclipse. However, real gas species (SO, O 2) may not be perfectly non-condensable at Io's surface temperatures. If the gas species was even weakly condensable (non-zero sticking/reaction coefficient) then the effect of the diffusion layer on the dynamics was dramatically reduced. In fact, if the sticking coefficient of the non-condensable exceeds ˜0.25, the collapse dynamics are effectively the same as

  16. Thermal-Structural Analysis of the MacArthur Maze Freeway Collapse

    SciTech Connect

    Noble, C R; Wemhoff, A P; McMichael, L D

    2008-02-26

    At approximately 3:41 AM on the morning of April 29, 2007, a tractor-trailer rig carrying 8,600 gallons (32.6 m{sup 3}) of fuel overturned on Interstate 880 in Oakland, CA. The resultant fire weakened the surrounding steel superstructure and caused a 50-yard (45.7 m) long section of the above connecting ramp from Interstate 80 to Interstate 580 to fail in approximately 18 minutes. In this study, we performed a loosely-coupled thermal-structural finite element analysis of the freeway using the LLNL Engineering codes NIKE3D, DYNA3D and TOPAZ3D. First, we applied an implicit structural code to statically initialize the stresses and displacements in the roadway at ambient conditions due to gravity loading. Next, we performed a thermal analysis by approximating the tanker fire as a moving box region of uniform temperature. This approach allowed for feasible calculation of the fire-to-structure radiative view factors and convective heat transport. We used a mass scaling methodology in the thermal analysis to reduce the overall simulation time so an explicit structural analysis could be used, which provided a more computationally efficient simulation of structural failure. Our approach showed structural failure of both spans due to thermal softening under gravity loading at approximately 20 minutes for a fixed fire temperature of 1200 C and fixed thermal properties. When temperature-dependent thermal properties were applied, the south and north spans collapsed at approximately 10 minutes and 16 minutes, respectively. Finally, we performed a preliminary fully-coupled analysis of the system using the new LLNL implicit multi-mechanics code Diablo. Our investigation shows that our approach provides a reasonable first-order analysis of the system, but improved modeling of the transport properties and the girder-box beam connections is required for more accurate predictions.

  17. The influence of inelastic neutrino interactions with light clusters on core-collapse supernova simulations

    NASA Astrophysics Data System (ADS)

    Furusawa, Shun; Nagakura, Hiroki; Sumiyoshi, Kohsuke; Yamada, Shoichi

    2014-12-01

    We perform numerical experiments to investigate the influence of inelastic neutrino reactions with light clusters in hot nuclear matter on core-collapse supernova simulations. These interactions have been neglected in most hydrodynamical supernova simulations. The neutrino absorptions and inelastic interactions with deuterons, tritons, helions and alpha particles are taken into account in the hydrodynamical simulations in addition to the ordinary charged- current interactions with nucleons. Axial symmetry is assumed but no equatorial symmetry is imposed. The time evolutions of shock waves are calculated with a simple light-bulb approximation for the neutrino transport and a multi-nuclei equation of state. We show that the heating rates of deuterons reach as high as ~ 10% of those of nucleons around the bottom of the gain region. On the other hand, alpha particles heat the matter near the shock wave, which is important when the shock wave expands and density and temperature of matter become low. It is also found that the models with heating by light clusters have different evolutions from those without it in non-linear evolution phase. The matter in the gain region has various densities and temperatures and there appear regions that are locally rich in deuterons and alpha particles. These results indicate that the inelastic reactions of light clusters, especially deuterons, should be incorporated in the simulations of core-collapse supernovae.

  18. Quantum collapse as a source of the seeds of cosmic structure during the radiation era

    NASA Astrophysics Data System (ADS)

    León, Gabriel; Landau, Susana J.; Piccirilli, María Pía

    2014-10-01

    The emergence of the seeds of cosmic structure, from a perfect isotropic and homogeneous Universe, has not been clearly explained by the standard version of inflationary models as the dynamics involved preserve the homogeneity and isotropy at all times. A proposal that attempts to deal with this problem, by introducing "the self-induced collapse hypothesis," has been introduced by D. Sudarsky and collaborators in previous papers. In all these works, the collapse of the wave function of the inflaton mode is restricted to occur during the inflationary period. In this paper, we analyze the possibility that the collapse happens during the radiation era. A viable model can be constructed under the condition that the inflaton field variable must be affected by the collapse while the momentum variable can or cannot be affected. Another condition to be fulfilled is that the time of collapse must be independent of k . However, when comparing with recent observational data, the predictions of the model cannot be distinguished from the ones provided by the standard inflationary scenario. The main reason for this arises from the requirement that primordial power spectrum obtained for the radiation era matches the amplitude of scalar fluctuations consistent with the latest cosmic microwave background observations. This latter constraint results in a limit on the possible times of collapse and ensures that the contribution of the inflaton field to the energy-momentum tensor is negligible compared to the contribution of the radiation fields.

  19. Relationship between chain collapse and secondary structure formation in a partially folded protein.

    PubMed

    Nakagawa, Kanako; Yamada, Yoshiteru; Matsumura, Yoshitaka; Tsukamoto, Seiichi; Yamamoto-Ohtomo, Mio; Ohtomo, Hideaki; Okabe, Takahiro; Fujiwara, Kazuo; Ikeguchi, Masamichi

    2014-06-01

    Chain collapse and secondary structure formation are frequently observed during the early stages of protein folding. Is the chain collapse brought about by interactions between secondary structure units or is it due to polymer behavior in a poor solvent (coil-globule transition)? To answer this question, we measured small-angle X-ray scattering for a series of β-lactoglobulin mutants under conditions in which they assume a partially folded state analogous to the folding intermediates. Mutants that were designed to disrupt the secondary structure units showed the gyration radii similar to that of the wild type protein, indicating that chain collapse is due to coil-globule transitions. PMID:25100622

  20. RADIATION MAGNETOHYDRODYNAMIC SIMULATIONS OF PROTOSTELLAR COLLAPSE: NONIDEAL MAGNETOHYDRODYNAMIC EFFECTS AND EARLY FORMATION OF CIRCUMSTELLAR DISKS

    SciTech Connect

    Tomida, Kengo; Okuzumi, Satoshi; Machida, Masahiro N. E-mail: okuzumi@geo.titech.ac.jp

    2015-03-10

    The transport of angular momentum by magnetic fields is a crucial physical process in the formation and evolution of stars and disks. Because the ionization degree in star-forming clouds is extremely low, nonideal magnetohydrodynamic (MHD) effects such as ambipolar diffusion and ohmic dissipation work strongly during protostellar collapse. These effects have significant impacts in the early phase of star formation as they redistribute magnetic flux and suppress angular momentum transport by magnetic fields. We perform three-dimensional nested-grid radiation magnetohydrodynamic simulations including ohmic dissipation and ambipolar diffusion. Without these effects, magnetic fields transport angular momentum so efficiently that no rotationally supported disk is formed even after the second collapse. Ohmic dissipation works only in a relatively high density region within the first core and suppresses angular momentum transport, enabling formation of a very small rotationally supported disk after the second collapse. With both ohmic dissipation and ambipolar diffusion, these effects work effectively in almost the entire region within the first core and significant magnetic flux loss occurs. As a result, a rotationally supported disk is formed even before a protostellar core forms. The size of the disk is still small, about 5 AU at the end of the first core phase, but this disk will grow later as gas accretion continues. Thus, the nonideal MHD effects can resolve the so-called magnetic braking catastrophe while keeping the disk size small in the early phase, which is implied from recent interferometric observations.

  1. Simulation of shock-induced bubble collapse with application to vascular injury in shockwave lithotripsy

    NASA Astrophysics Data System (ADS)

    Coralic, Vedran

    Shockwave lithotripsy is a noninvasive medical procedure wherein shockwaves are repeatedly focused at the location of kidney stones in order to pulverize them. Stone comminution is thought to be the product of two mechanisms: the propagation of stress waves within the stone and cavitation erosion. However, the latter mechanism has also been implicated in vascular injury. In the present work, shock-induced bubble collapse is studied in order to understand the role that it might play in inducing vascular injury. A high-order accurate, shock- and interface-capturing numerical scheme is developed to simulate the three-dimensional collapse of the bubble in both the free-field and inside a vessel phantom. The primary contributions of the numerical study are the characterization of the shock-bubble and shock-bubble-vessel interactions across a large parameter space that includes clinical shockwave lithotripsy pressure amplitudes, problem geometry and tissue viscoelasticity, and the subsequent correlation of these interactions to vascular injury. Specifically, measurements of the vessel wall pressures and displacements, as well as the finite strains in the fluid surrounding the bubble, are utilized with available experiments in tissue to evaluate damage potential. Estimates are made of the smallest injurious bubbles in the microvasculature during both the collapse and jetting phases of the bubble's life cycle. The present results suggest that bubbles larger than one micrometer in diameter could rupture blood vessels under clinical SWL conditions.

  2. NEW EQUATIONS OF STATE IN SIMULATIONS OF CORE-COLLAPSE SUPERNOVAE

    SciTech Connect

    Hempel, M.; Liebendoerfer, M.; Fischer, T.; Schaffner-Bielich, J.

    2012-03-20

    We discuss three new equations of state (EOS) in core-collapse supernova simulations. The new EOS are based on the nuclear statistical equilibrium model of Hempel and Schaffner-Bielich (HS), which includes excluded volume effects and relativistic mean-field (RMF) interactions. We consider the RMF parameterizations TM1, TMA, and FSUgold. These EOS are implemented into our spherically symmetric core-collapse supernova model, which is based on general relativistic radiation hydrodynamics and three-flavor Boltzmann neutrino transport. The results obtained for the new EOS are compared with the widely used EOS of H. Shen et al. and Lattimer and Swesty. The systematic comparison shows that the model description of inhomogeneous nuclear matter is as important as the parameterization of the nuclear interactions for the supernova dynamics and the neutrino signal. Furthermore, several new aspects of nuclear physics are investigated: the HS EOS contains distributions of nuclei, including nuclear shell effects. The appearance of light nuclei, e.g., deuterium and tritium, is also explored, which can become as abundant as alphas and free protons. In addition, we investigate the black hole formation in failed core-collapse supernovae, which is mainly determined by the high-density EOS. We find that temperature effects lead to a systematically faster collapse for the non-relativistic LS EOS in comparison with the RMF EOS. We deduce a new correlation for the time until black hole formation, which allows the determination of the maximum mass of proto-neutron stars, if the neutrino signal from such a failed supernova would be measured in the future. This would give a constraint for the nuclear EOS at finite entropy, complementary to observations of cold neutron stars.

  3. Structures and characterizations of bundles of collapsed double-walled carbon nanotubes.

    PubMed

    Zhong, X H; Wang, R; Liu, L B; Kang, M; Wen, Y Y; Hou, F; Feng, J M; Li, Y L

    2012-12-21

    The performance of carbon nanotube fibers (CNTFs) significantly depends on the packing styles of carbon nanotube (CNT) bundles. Revealing the structures and characterizations of CNT bundles is contributive to understanding the structures, properties and even the formation of CNTFs during chemical vapor deposition (CVD) processing. In this paper, bundles consisting of collapsed double-walled carbon nanotubes (CDWNT) in continuous CNTFs fabricated from CVD processing were characterized and analyzed by transmission electronic microscopy (TEM) and x-ray diffraction (XRD). TEM observations show that the continuous CNTFs are composed of CDWNT-bundle units. CDWNT-bundle units of 10-20 nm in thickness contain near numbers of collapsed tubes. The degree of collapse of the CDWNTs varies with their location in the bundle and their own diameter. CDWNT-bundle units pack side by side or face to face, assembling into super-bundles with diameters of 200-300 nm. XRD patterns show that three novel and strong peaks appear at 10°-15°, 21.3° and 23.7°, respectively, corresponding to CDWNT two side pores (10°-15°) and CDWNT layers (21.3° and 23.7°), which indicates the collapsed tube structures in CNTFs are common characterizations. Finally, a collapse mechanism is discussed from the observation and analysis. PMID:23196759

  4. Octupolar out-of-plane magnetic field structure generation during collisionless magnetic reconnection in a stressed X-point collapse

    SciTech Connect

    Graf von der Pahlen, J.; Tsiklauri, D.

    2014-06-15

    The out-of-plane magnetic field, generated by fast magnetic reconnection, during collisionless, stressed X-point collapse, was studied with a kinetic, 2.5D, fully electromagnetic, relativistic particle-in-cell numerical code, using both closed (flux conserving) and open boundary conditions on a square grid. It was discovered that the well known quadrupolar structure in the out-of-plane magnetic field gains four additional regions of opposite magnetic polarity, emerging near the corners of the simulation box, moving towards the X-point. The emerging, outer, magnetic field structure has opposite polarity to the inner quadrupolar structure, leading to an overall octupolar structure. Using Ampere's law and integrating electron and ion currents, defined at grid cells, over the simulation domain, contributions to the out-of-plane magnetic field from electron and ion currents were determined. The emerging regions of opposite magnetic polarity were shown to be the result of ion currents. Magnetic octupolar structure is found to be a signature of X-point collapse, rather than tearing mode, and factors relating to potential discoveries in experimental scenarios or space-craft observations are discussed.

  5. Magnetic Reconnection during Collisionless, Stressed, X-point Collapse using Particle-in-cell Simulation

    NASA Astrophysics Data System (ADS)

    Tsiklauri, D.; Haruki, T.

    2008-09-01

    Dungey's (1953) work on X-point collapse is the earliest analysis done on magnetic reconnection and predates the tearing mode, Sweet-Parker and Petcheck reconnection models. X-point collapse soon fell out of favour because in the collisional (MHD) regime, for the plausible space plasma parameters, it was found to be inefficient. We however show [Tsiklauri D. and T. Haruki, Phys. of Plasmas, 14, 112905, (2007)] that in the collisionless regime, which is indeed more applicable to space plasmas, the reconnection is efficient. We study magnetic reconnection during collisionless, stressed, X-point collapse using kinetic, 2.5D, fully electromagnetic, relativistic Particle-in-Cell numerical code. Two cases of weakly and strongly stressed X-point collapse were considered. Here descriptors weakly and strongly refer to 20% and 124% unidirectional spatial compression of the X-point, respectively. We found that within about one Alfven time, 2% and 20% of the initial magnetic energy is converted into heat and accelerated particle energy in the case of weak and strong stress, respectively. In the both cases, during the peak of the reconnection, the quadruple out-of-plane magnetic field is generated. These results strongly suggest the importance of the collisionless, stressed X-point collapse as an efficient mechanism of converting magnetic energy into heat and super-thermal particle energy. In the weakly stressed case, the reconnection rate, defined as the out-of-plane electric field in the X-point normalized by the product of external magnetic field and Alfven speeds, peaks at 0.11, with its average over 1.25 Alfven times being 0.04. Electron energy distribution in the current sheet, at the high-energy end of the spectrum, shows a power-law distribution with the index varying in time, attaining a maximal value of -4.1 at the final simulation time step (1.25 Alfven times). In the strongly stressed case, magnetic reconnection peak occurs 3.4 times faster and is more efficient

  6. Fully Relativistic Simulations of the Merger and Collapse of Neutron Star Binaries

    NASA Astrophysics Data System (ADS)

    Motl, Patrick M.; Anderson, M.; Hirschman, E. W.; Lehner, L.; Liebling, S. L.; Neilsen, D.; Palenzuela, C.; Tohline, J. E.

    2007-12-01

    We present simulations of the inspiral, merger and eventual collapse of neutron star binaries calculated in full general relativity. The Einstein equations are solved in a first order reduction of the general harmonic formulation while the matter is evolved with a relativistic MHD code though magnetic fields are absent in the simulations presented here. We use the adaptive mesh refinement package HAD to resolve the disparate length scales in the problem ranging from the radiation zone down to the internal dynamics of the neutron stars. We will briefly highlight our results for the gravitational radiation waveform as well as the evolution of angular momentum in the rotationally-supported, merged object that eventually collapses. This work has been supported in part by NSF grants AST 04-07070 and PHY 03-26311, and in part through NASA's ATP program grants NAG5-8497, NAG5-13430 and NNX07AG84G. The computations were performed on Pelican which is supported by LSU's High Performance Computing group, Marylou4 at BYU and with Teragrid resources.

  7. Pressure-induced volume collapse and structural phase transitions in SrRuO{sub 3}

    SciTech Connect

    Zhernenkov, Mikhail; Fabbris, Gilberto; Chmaissem, Omar; Mitchell, J.F.; Zheng, H.; Haskel, Daniel

    2013-09-15

    We report on the low temperature (6 K) structural properties of SrRuO{sub 3} under quasi-hydrostatic pressure studied by synchrotron X-ray powder diffraction in a diamond anvil cell. First principle calculations predict a first-order perovskite (Pv) to post-perovskite (pPv) phase transition at ∼40 GPa accompanied by a 1.9% volume collapse. Our results rule out the occurrence of a pPv phase to 54 GPa. Instead, we find a Pv to monoclinic to triclinic sequence of phase transitions. The monoclinic to triclinic phase transition at ∼38 GPa is accompanied by a 3.5% volume collapse. X-ray absorption spectroscopy indicates that this volume collapse is not accompanied by a change in Ru valence state. Our results should help guide improvements to theoretical treatments of this and other correlated d-electron systems based on density functional theory. - Graphical abstract: Unit cell volume as a function of pressure (T=6 K). Black squares and red circles correspond to Ne and He pressure media, respectively. Blue dashed lines are fit to the data before the volume collapse using a second-order Birch–Murnaghan equation of state excluding (lower curve) and including (upper curve) neutron diffraction data for the low temperature, ambient pressure volume. Dashed lines denote structural phase boundaries. Display Omitted - Highlights: • Crystal structure of SrRuO3 was studied under high pressure up to 54 GPa. • Pv to monoclinic to triclinic sequence of phase transitions was observed. • Transition to triclinic phase at ∼38 GPa is accompanied by a 3.5% volume collapse. • Volume collapse in SrRuO3 is not driven by a change in Ru valence state. • Pv-to-pPv phase transition predicted by DFT at 40 Gpa is not observed up to 54 GPa.

  8. On the Requirements for Realistic Modeling of Neutrino Transport in Simulations of Core-collapse Supernovae

    SciTech Connect

    Lentz, Eric J; Mezzacappa, Anthony; Messer, Bronson; Liebendoerfer, Matthias; Hix, William Raphael; Bruenn, S. W.

    2012-01-01

    We have conducted a series of numerical experiments with the spherically-symmetric, general-relativistic neutrino radiation hydrodynamics code Agile-BOLTZTRAN to examine the effects of several approximations used in multidimensional core-collapse supernova simulations. Our code permits us to examine the effects of these approximations quantitatively by removing, or substituting for, the pieces of supernova physics of interest. These approximations include: (1) using Newtonian versus general-relativistic gravity, hydrodynamics, and transport; (2) using older weak interactions, including the omission of non-isoenergetic neutrino scattering, versus up-to-date weak interactions; and (3) omitting the velocity-dependent terms, or observer corrections, from the neutrino Boltzmann kinetic equation. We demonstrate that each of these changes has non-negligible effects on the outcomes of our simulations. Finally, we discuss the impact these results have for current, and future, multidimensional models.

  9. Geophysical signatures of collapsed paleokarst structures in the Upper Miocene reefal complex of Mallorca (Balearic Islands)

    NASA Astrophysics Data System (ADS)

    Casas, Albert; Himi, Mahjoub; Lovera, Raúl; Fornòs, Joan; Montes-Egito, Lucila; Evangelista-Teixeira, Washington; de Medeiro-Souza, Anderson; Casado, Ismael; Pinheiro-Lima Filho, Francisco

    2015-04-01

    Collapsed paleokarst structures of Mallorca Island represent one of the best examples of collapsed paleocaves because of the good outcrops existing along sea cliffs. These structures have been produced by roof collapse of caverns developed in the underlying reefal complex. Coalesced systems of collapsed paleocaves form an important class of carbonate reservoirs that have arisen from shallow karst processes, followed by collapse, burial and diagenesis. These paleokarts structures are characterised by highly irregular subsurface conditions and for better defining their structure different geophysical methods have been tested over well-defined models exposed in a coastal cliff. Electrical resistivity tomography (ERT) profiles were acquired using a Wenner-Schlumberger array and electrodes 2m apart. Inverted resistivity sections show high contrasted electrical properties between different sedimentary facies, ranging from low resistivity values (< 40 ohm•m) for clayey infill sediments to high resistivity values (> 1000 ohm•m) for high porosity breccias. Ground probing radar (GPR) profiles were recorded along the same lines using a constant-offset a station spacing of 0.2 m, with an antenna of 50 MHz of dominant frequency. The total recording time window was 500 ns at a sample interval of 1600 ps. These parameters were determined by a series of tests prior to the main acquisition. Different GPR facies have been recognized. Finally, seismic refraction profiles were recorded in order to define the geometry and distribution of seismic velocities of the models along the same profiles. This geophysical investigation demonstrates that the combination of detailed geological (sedimentology, geomorphology, structural geology…) with high resolution geophysical techniques yields the best results for characterizing such geologically complex structures.

  10. Implicit large eddy simulations of anisotropic weakly compressible turbulence with application to core-collapse supernovae

    NASA Astrophysics Data System (ADS)

    Radice, David; Couch, Sean M.; Ott, Christian D.

    2015-08-01

    In the implicit large eddy simulation (ILES) paradigm, the dissipative nature of high-resolution shock-capturing schemes is exploited to provide an implicit model of turbulence. The ILES approach has been applied to different contexts, with varying degrees of success. It is the de-facto standard in many astrophysical simulations and in particular in studies of core-collapse supernovae (CCSN). Recent 3D simulations suggest that turbulence might play a crucial role in core-collapse supernova explosions, however the fidelity with which turbulence is simulated in these studies is unclear. Especially considering that the accuracy of ILES for the regime of interest in CCSN, weakly compressible and strongly anisotropic, has not been systematically assessed before. Anisotropy, in particular, could impact the dissipative properties of the flow and enhance the turbulent pressure in the radial direction, favouring the explosion. In this paper we assess the accuracy of ILES using numerical methods most commonly employed in computational astrophysics by means of a number of local simulations of driven, weakly compressible, anisotropic turbulence. Our simulations employ several different methods and span a wide range of resolutions. We report a detailed analysis of the way in which the turbulent cascade is influenced by the numerics. Our results suggest that anisotropy and compressibility in CCSN turbulence have little effect on the turbulent kinetic energy spectrum and a Kolmogorov scaling is obtained in the inertial range. We find that, on the one hand, the kinetic energy dissipation rate at large scales is correctly captured even at low resolutions, suggesting that very high "effective Reynolds number" can be achieved at the largest scales of the simulation. On the other hand, the dynamics at intermediate scales appears to be completely dominated by the so-called bottleneck effect, i.e., the pile up of kinetic energy close to the dissipation range due to the partial

  11. Extensional tectonics and collapse structures in the Suez Rift (Egypt)

    NASA Technical Reports Server (NTRS)

    Chenet, P. Y.; Colletta, B.; Desforges, G.; Ousset, E.; Zaghloul, E. A.

    1985-01-01

    The Suez Rift is a 300 km long and 50 to 80 km wide basin which cuts a granitic and metamorphic shield of Precambrian age, covered by sediments of Paleozoic to Paleogene age. The rift structure is dominated by tilted blocks bounded by NW-SE normal faults. The reconstruction of the paleostresses indicates a N 050 extension during the whole stage of rifting. Rifting began 24 My ago with dikes intrusions; main faulting and subsidence occurred during Early Miocene producing a 80 km wide basin (Clysmic Gulf). During Pliocene and Quaternary times, faulting is still active but subsidence is restricted to a narrower area (Present Gulf). On the Eastern margin of the gulf, two sets of fault trends are predominant: (1) N 140 to 150 E faults parallel to the gulf trend with pure dip-slip displacement; and (2) cross faults, oriented NOO to N 30 E that have a strike-slip component consistent with the N 050 E distensive stress regime. The mean dip cross fault is steeper (70 to 80 deg) than the dip of the faults parallel to the Gulf (30 to 70 deg). These two sets of fault define diamond shaped tilted block. The difference of mechanical behavior between the basement rocks and the overlying sedimentary cover caused structural disharmony and distinct fault geometries.

  12. Three-dimensional simulations of core-collapse supernovae: from shock revival to shock breakout

    NASA Astrophysics Data System (ADS)

    Wongwathanarat, A.; Müller, E.; Janka, H.-Th.

    2015-05-01

    We present three-dimensional hydrodynamic simulations of the evolution of core-collapse supernovae (SN) from blast-wave initiation by the neutrino-driven mechanism to shock breakout from the stellar surface, using an axis-free Yin-Yang grid and considering two 15 M⊙ red supergiants (RSG) and two blue supergiants (BSG) of 15 M⊙ and 20 M⊙. We demonstrate that the metal-rich ejecta in homologous expansion still carry fingerprints of asymmetries at the beginning of the explosion, but the final metal distribution is massively affected by the detailed progenitor structure. The most extended and fastest metal fingers and clumps are correlated with the biggest and fastest-rising plumes of neutrino-heated matter, because these plumes most effectively seed the growth of Rayleigh-Taylor (RT) instabilities at the C+O/He and He/H composition-shell interfaces after the passage of the SN shock. The extent of radial mixing, global asymmetry of the metal-rich ejecta, RT-induced fragmentation of initial plumes to smaller-scale fingers, and maximum Ni and minimum H velocities depend not only on the initial asphericity and explosion energy (which determine the shock and initial Ni velocities), but also on the density profiles and widths of C+O core and He shell and on the density gradient at the He/H transition, which leads to unsteady shock propagation and the formation of reverse shocks. Both RSG explosions retain a large global metal asymmetry with pronounced clumpiness and substructure, deep penetration of Ni fingers into the H-envelope (with maximum velocities of 4000-5000 km s-1 for an explosion energy around 1.5 bethe) and efficient inward H-mixing. While the 15 M⊙ BSG shares these properties (maximum Ni speeds up to ~3500 km s-1), the 20 M⊙ BSG develops a much more roundish geometry without pronounced metal fingers (maximum Ni velocities only ~2200 km s-1) because of reverse-shock deceleration and insufficient time for strong RT growth and fragmentation at the He

  13. Structural mechanics simulations

    NASA Astrophysics Data System (ADS)

    Biffle, Johnny H.

    1992-05-01

    Sandia National Laboratory has a very broad structural capability. Work has been performed in support of reentry vehicles, nuclear reactor safety, weapons systems and components, nuclear waste transport, strategic petroleum reserve, nuclear waste storage, wind and solar energy, drilling technology, and submarine programs. The analysis environment contains both commercial and internally developed software. Included are mesh generation capabilities, structural simulation codes, and visual codes for examining simulation results. To effectively simulate a wide variety of physical phenomena, a large number of constitutive models have been developed.

  14. Structural mechanics simulations

    NASA Technical Reports Server (NTRS)

    Biffle, Johnny H.

    1992-01-01

    Sandia National Laboratory has a very broad structural capability. Work has been performed in support of reentry vehicles, nuclear reactor safety, weapons systems and components, nuclear waste transport, strategic petroleum reserve, nuclear waste storage, wind and solar energy, drilling technology, and submarine programs. The analysis environment contains both commercial and internally developed software. Included are mesh generation capabilities, structural simulation codes, and visual codes for examining simulation results. To effectively simulate a wide variety of physical phenomena, a large number of constitutive models have been developed.

  15. Mathematical simulation of one-dimensional dam-collapse flow over wetted bed

    NASA Astrophysics Data System (ADS)

    Medkour, D.; Kadja, M.

    2003-05-01

    A mathematical model is described and applied to simulate sudden total one-dimensional dam-break flow over wetted bed. The dam collapse takes place in a rough sloping non-prismatic channel of various cross-sections. The water parameters to be instantaneously calculated are the height h, the discharge Q, the mean velocity u and the pressure force P. The mentioned flow is governed by the Saint-Venant shallow water equations and the computation process, on the basis of rectangular grid of points, consists of two complementary solutions: (a) at the first instant after the collapse, an analytical procedure is considered. The calculated parameters are taken as initial values in the water stream embraced by the flood wave. Outside this zone, initial conditions are those which preexist before the rupture. (b) Beyond this time, a numerical computation is carried out by using an iterative explicit method of characteristics. (c) Every time stage of calculation starts by determining the discontinuity (wave front) parameters namely its abscissa x_δ, height h_δ, celerity c_δ and alert delay t_δ. The former is the discontinuity arrival time at considered station. Typical results are obtained and compared with similar ones already published by others in the literature.

  16. Axisymmetric general relativistic simulations of the accretion-induced collapse of white dwarfs

    SciTech Connect

    Abdikamalov, E. B.; Ott, C. D.; Rezzolla, L.; Dessart, L.; Dimmelmeier, H.; Marek, A.; Janka, H.-T.

    2010-02-15

    The accretion-induced collapse (AIC) of a white dwarf may lead to the formation of a protoneutron star and a collapse-driven supernova explosion. This process represents a path alternative to thermonuclear disruption of accreting white dwarfs in type Ia supernovae. In the AIC scenario, the supernova explosion energy is expected to be small and the resulting transient short-lived, making it hard to detect by electromagnetic means alone. Neutrino and gravitational-wave (GW) observations may provide crucial information necessary to reveal a potential AIC. Motivated by the need for systematic predictions of the GW signature of AIC, we present results from an extensive set of general-relativistic AIC simulations using a microphysical finite-temperature equation of state and an approximate treatment of deleptonization during collapse. Investigating a set of 114 progenitor models in axisymmetric rotational equilibrium, with a wide range of rotational configurations, temperatures and central densities, and resulting white dwarf masses, we extend previous Newtonian studies and find that the GW signal has a generic shape akin to what is known as a 'type III' signal in the literature. Despite this reduction to a single type of waveform, we show that the emitted GWs carry information that can be used to constrain the progenitor and the postbounce rotation. We discuss the detectability of the emitted GWs, showing that the signal-to-noise ratio for current or next-generation interferometer detectors could be high enough to detect such events in our Galaxy. Furthermore, we contrast the GW signals of AIC and rotating massive star iron core collapse and find that they can be distinguished, but only if the distance to the source is known and a detailed reconstruction of the GW time series from detector data is possible. Some of our AIC models form massive quasi-Keplerian accretion disks after bounce. The disk mass is very sensitive to progenitor mass and angular momentum

  17. Estimating the collapse of aggregated fine soil structure in a mountainous forested catchment.

    PubMed

    Mouri, Goro; Shinoda, Seirou; Golosov, Valentin; Chalov, Sergey; Shiiba, Michiharu; Hori, Tomoharu; Oki, Taikan

    2014-06-01

    This paper describes the relationship of forest soil dryness and antecedent rainfall with suspended sediment (SS) yield due to extreme rainfall events and how this relationship affects the survival of forest plants. Several phenomena contribute to this relationship: increasing evaporation (amount of water vapour discharged from soil) due to increasing air temperature, decreasing moisture content in the soil, the collapse of aggregates of fine soil particles, and the resulting effects on forest plants. To clarify the relationships among climate variation, the collapse of soil particle aggregates, and rainfall-runoff processes, a numerical model was developed to reproduce such aggregate collapse in detail. The validity of the numerical model was confirmed by its application to the granitic mountainous catchment of the Nagara River basin in Japan and by comparison with observational data. The simulation suggests that important problems, such as the collapse of forest plants in response to decreases in soil moisture content and antecedent rainfall, will arise if air temperature continues to increase. PMID:24055411

  18. Probabilistic Modeling of Landfill Subsidence Introduced by Buried Structure Collapse - 13229

    SciTech Connect

    Foye, Kevin; Soong, Te-Yang

    2013-07-01

    The long-term reliability of land disposal facility final cover systems - and therefore the overall waste containment - depends on the distortions imposed on these systems by differential settlement/subsidence. The evaluation of differential settlement is challenging because of the heterogeneity of the waste mass and buried structure placement. Deterministic approaches to long-term final cover settlement prediction are not able to capture the spatial variability in the waste mass and sub-grade properties, especially discontinuous inclusions, which control differential settlement. An alternative is to use a probabilistic model to capture the non-uniform collapse of cover soils and buried structures and the subsequent effect of that collapse on the final cover system. Both techniques are applied to the problem of two side-by-side waste trenches with collapsible voids. The results show how this analytical technique can be used to connect a metric of final cover performance (inundation area) to the susceptibility of the sub-grade to collapse and the effective thickness of the cover soils. This approach allows designers to specify cover thickness, reinforcement, and slope to meet the demands imposed by the settlement of the underlying waste trenches. (authors)

  19. A study on collapse behavior and energy absorption capability of Al/CFRP hybrid structural member

    NASA Astrophysics Data System (ADS)

    Hwang, Woo-Chae; Lee, Kil-Sung; Yang, Yong-Jun; Choi, Ju-Ho; Jung, Jong-An; Cha, Cheon-Seok; Yang, In-Young

    2012-04-01

    In vehicle industry, the design of vehicle should be inclined towards the safety performance aspect, at the same time; it also should have weight loss of a vehicles structural member. In this study, experimental investigations are performed for Al/CFRP Hybrid structural members. They are cured by heating to the appropriate curing temperature (130°C) by means of a heater at the vacuum bag of the autoclave. Because the CFRP is an anisotropic material whose mechanical properties, such as strength and elasticity, change with its stacking condition, special attention was given to the effects of the stacking condition on the collapse behavior evaluation of the Al/CFRP Hybrid structural members. The collapse mode and energy absorption capability of the Al/CFRP Hybrid structural members was analyzed with change of the fiber orientation. The stacking condition were selected to investigate the effect of the fiber orientation angle (+/-15°, +/-45°, 90°, 0°/90°and 90°/0° where 0°direction coincides with axis of the member)on the energy absorption of the Al/CFRP Hybrid structural members. The collapse mode and energy absorption capability of Al/CFRP Hybrid structural members was analyzed with change of the fiber orientation of CFRP.

  20. A study on collapse behavior and energy absorption capability of Al/CFRP hybrid structural member

    NASA Astrophysics Data System (ADS)

    Hwang, Woo-Chae; Lee, Kil-Sung; Yang, Yong-Jun; Choi, Ju-Ho; Jung, Jong-An; Cha, Cheon-Seok; Yang, In-Young

    2011-11-01

    In vehicle industry, the design of vehicle should be inclined towards the safety performance aspect, at the same time; it also should have weight loss of a vehicles structural member. In this study, experimental investigations are performed for Al/CFRP Hybrid structural members. They are cured by heating to the appropriate curing temperature (130°C) by means of a heater at the vacuum bag of the autoclave. Because the CFRP is an anisotropic material whose mechanical properties, such as strength and elasticity, change with its stacking condition, special attention was given to the effects of the stacking condition on the collapse behavior evaluation of the Al/CFRP Hybrid structural members. The collapse mode and energy absorption capability of the Al/CFRP Hybrid structural members was analyzed with change of the fiber orientation. The stacking condition were selected to investigate the effect of the fiber orientation angle (+/-15°, +/-45°, 90°, 0°/90°and 90°/0° where 0°direction coincides with axis of the member)on the energy absorption of the Al/CFRP Hybrid structural members. The collapse mode and energy absorption capability of Al/CFRP Hybrid structural members was analyzed with change of the fiber orientation of CFRP.

  1. THREE-DIMENSIONAL CORE-COLLAPSE SUPERNOVA SIMULATED USING A 15 M{sub ⊙} PROGENITOR

    SciTech Connect

    Lentz, Eric J.; Mezzacappa, Anthony; Harris, J. Austin; Yakunin, Konstantin N.; Bruenn, Stephen W.; Hix, W. Raphael; Messer, O. E. Bronson; Endeve, Eirik; Blondin, John M.; Marronetti, Pedro

    2015-07-10

    We have performed ab initio neutrino radiation hydrodynamics simulations in three and two spatial dimensions (3D and 2D) of core-collapse supernovae from the same 15 M{sub ☉} progenitor through 440 ms after core bounce. Both 3D and 2D models achieve explosions; however, the onset of explosion (shock revival) is delayed by ∼100 ms in 3D relative to the 2D counterpart and the growth of the diagnostic explosion energy is slower. This is consistent with previously reported 3D simulations utilizing iron-core progenitors with dense mantles. In the ∼100 ms before the onset of explosion, diagnostics of neutrino heating and turbulent kinetic energy favor earlier explosion in 2D. During the delay, the angular scale of convective plumes reaching the shock surface grows and explosion in 3D is ultimately lead by a single, large-angle plume, giving the expanding shock a directional orientation not dissimilar from those imposed by axial symmetry in 2D simulations. We posit that shock revival and explosion in the 3D simulation may be delayed until sufficiently large plumes form, whereas such plumes form more rapidly in 2D, permitting earlier explosions.

  2. Three dimensional core-collapse supernova simulated using a 15 M⊙ progenitor

    DOE PAGES

    Lentz, Eric J.; Bruenn, Stephen W.; Hix, W. Raphael; Mezzacappa, Anthony; Messer, O. E. Bronson; Endeve, Eirik; Blondin, John M.; Harris, J. Austin; Marronetti, Pedro; Yakunin, Konstantin N.

    2015-07-10

    We have performed ab initio neutrino radiation hydrodynamics simulations in three and two spatial dimensions (3D and 2D) of core-collapse supernovae from the same 15 M⊙ progenitor through 440 ms after core bounce. Both 3D and 2D models achieve explosions; however, the onset of explosion (shock revival) is delayed by ~100 ms in 3D relative to the 2D counterpart and the growth of the diagnostic explosion energy is slower. This is consistent with previously reported 3D simulations utilizing iron-core progenitors with dense mantles. In the ~100 ms before the onset of explosion, diagnostics of neutrino heating and turbulent kinetic energymore » favor earlier explosion in 2D. During the delay, the angular scale of convective plumes reaching the shock surface grows and explosion in 3D is ultimately lead by a single, large-angle plume, giving the expanding shock a directional orientation not dissimilar from those imposed by axial symmetry in 2D simulations. Finally, we posit that shock revival and explosion in the 3D simulation may be delayed until sufficiently large plumes form, whereas such plumes form more rapidly in 2D, permitting earlier explosions.« less

  3. Near Real-time Data Analysis of Core-Collapse Supernova Simulations With Bellerophon

    SciTech Connect

    Lingerfelt, Eric J; Messer, Bronson; Desai, Sharvari S; Holt, Chastity A; Lentz, Eric J

    2014-01-01

    We present an overview of a software system, Bellerophon, built to support a production-level HPC application called CHIMERA, which simulates core-collapse supernova events at the petascale. Developed over the last four years, Bellerophon enables CHIMERA s geographically dispersed team of collaborators to perform data analysis in near real-time. Its n-tier architecture provides an encapsulated, end-to-end software solution that enables the CHIMERA team to quickly and easily access highly customizable animated and static views of results from anywhere in the world via a web-deliverable, cross-platform desktop application. In addition, Bellerophon addresses software engineering tasks for the CHIMERA team by providing an automated mechanism for performing regression testing on a variety of supercomputing platforms. Elements of the team s workflow management needs are met with software tools that dynamically generate code repository statistics, access important online resources, and monitor the current status of several supercomputing resources.

  4. Inner Structure of Protostellar Collapse Candidate B335 Derived from Millimeter-Wave Interferometry

    NASA Astrophysics Data System (ADS)

    Harvey, Daniel W. A.; Wilner, David J.; Myers, Philip C.; Tafalla, Mario; Mardones, Diego

    2003-02-01

    We present a study of the density structure of the protostellar collapse candidate B335 using continuum observations from the IRAM Plateau de Bure Interferometer made at wavelengths of 1.2 and 3.0 mm. We analyze these data, which probe spatial scales from 5000 to 500 AU, directly in the visibility domain by comparison with synthetic observations constructed from models that assume different physical conditions. This approach allows for much more stringent constraints to be derived from the data than from analysis of images. A single radial power law in density provides a good description of the data, with a best-fit power-law density index p=1.65+/-0.05. Through simulations, we quantify the sensitivity of this result to various model uncertainties, including assumptions of temperature distribution, outer boundary, dust opacity spectral index, and an unresolved central component. The largest uncertainty comes from the unknown presence of a centralized point source. The maximal point source, with 1.2 mm flux of F=12+/-7 mJy, reduces the power-law density index to p=1.47+/-0.07. The remaining sources of systematic uncertainty, of which the most important is the radial dependence of the temperature distribution, likely contribute a total uncertainty at the level of δp<~0.2. Taking into account the uncertainties, we find strong evidence that the power-law index of the density distribution within 5000 AU is significantly less than the value at larger radii, close to 2.0, from previous studies of dust emission and extinction. Images made from the data show clear departures from spherical symmetry, with the globule being slightly extended perpendicular to the outflow axis. The inclusion of a crude model of the outflow as a hollow bipolar cone of constant opening angle improves the fit and leaves the resulting density power-law index unchanged. These results conform well to the generic paradigm of isolated, low-mass star formation, which predicts a power-law density index

  5. Campaign 2 Level 2 Milestone Review 2009: Milestone # 3131 Grain Scale Simulation of Pore Collapse

    SciTech Connect

    Schwartz, A J

    2009-09-28

    The milestone reviewed on Sept. 16, 2009 was 'High-fidelity simulation of shock initiation of high explosives at the grain scale using coupled hydrodynamics, thermal transport and chemistry'. It is the opinion of the committee that the team has satisfied the milestone. A detailed description of how the goals were met is provided. The milestone leveraged capabilities from ASC Physics and Engineering Materials program combined with experimental input from Campaign 2. A combined experimental-multiscale simulation approach was used to create and validate the various TATB model components. At the lowest length scale, quantum chemical calculations were used to determine equations of state, thermal transport properties and reaction rates for TATB as it is decomposing. High-pressure experiments conducted in diamond anvil cells, gas guns and the Z machine were used to validate the EOS, thermal conductivity, specific heat and predictions of water formation. The predicted reaction networks and chemical kinetic equations were implemented in Cheetah and validated against the lower length scale data. Cheetah was then used within the ASC code ALE3D for high-resolution, thermo-mechanically coupled simulations of pore collapse at the micron size scale to predict conditions for detonation initiation.

  6. High-resolution three-dimensional simulations of core-collapse supernovae in multiple progenitors

    SciTech Connect

    Couch, Sean M.; O'Connor, Evan P.

    2014-04-20

    Three-dimensional (3D) simulations of core-collapse supernovae (CCSNe) are granting new insight into the as-yet-uncertain mechanism that drives successful explosions. While there is still debate about whether explosions are obtained more easily in 3D than in 2D, it is undeniable that there exist qualitative and quantitative differences between the results of 3D and 2D simulations. We present an extensive set of high-resolution 1D, 2D, and 3D CCSN simulations with multispecies neutrino leakage carried out in two different progenitors. Our simulations confirm the results of Couch indicating that 2D explodes more readily than 3D. We argue that this is due to the inadequacies of 2D to accurately capture important aspects of the 3D dynamics. We find that without artificially enhancing the neutrino heating rate, we do not obtain explosions in 3D. We examine the development of neutrino-driven convection and the standing accretion shock instability (SASI) and find that, in separate regimes, either instability can dominate. We find evidence for growth of the SASI for both 15 M {sub ☉} and 27 M {sub ☉} progenitors; however, it is weaker in 3D exploding models. The growth rate of both instabilities is artificially enhanced along the symmetry axis in 2D as compared with our axis-free 3D Cartesian simulations. Our work highlights the growing consensus that CCSNe must be studied in 3D if we hope to solve the mystery of how the explosions are powered.

  7. LOCAL SIMULATIONS OF THE MAGNETOROTATIONAL INSTABILITY IN CORE-COLLAPSE SUPERNOVAE

    SciTech Connect

    Masada, Youhei; Takiwaki, Tomoya; Kotake, Kei; Sano, Takayoshi E-mail: kkotake@th.nao.ac.jp

    2012-11-10

    Bearing in mind the application of core-collapse supernovae, we study the nonlinear properties of the magnetorotational instability (MRI) by means of three-dimensional simulations in the framework of a local shearing box approximation. By systematically changing the shear rates that symbolize the degree of differential rotation in nascent proto-neutron stars (PNSs), we derive a scaling relation between the turbulent stress sustained by the MRI and the shear-vorticity ratio. Our parametric survey shows a power-law scaling between the turbulent stress (((w {sub tot}))) and the shear-vorticity ratio (g{sub q} ) as ((w {sub tot})){proportional_to}g {sup {delta}} {sub q} with an index of {delta} {approx} 0.5. The MRI-amplified magnetic energy has a similar scaling relative to the turbulent stress, while the Maxwell stress has a slightly smaller power-law index ({approx}0.36). By modeling the effect of viscous heating rates from MRI turbulence, we show that the stronger magnetic fields, or the larger shear rates initially imposed, lead to higher dissipation rates. For a rapidly rotating PNS with a spin period in milliseconds and with strong magnetic fields of 10{sup 15} G, the energy dissipation rate is estimated to exceed 10{sup 51} erg s{sup -1}. Our results suggest that the conventional magnetohydrodynamic (MHD) mechanism of core-collapse supernovae is likely to be affected by MRI-driven turbulence, which we speculate, on the one hand, could harm the MHD-driven explosions due to the dissipation of the shear rotational energy at the PNS surface; or, on the other hand, its energy deposition might be potentially favorable for the working of the neutrino-heating mechanism.

  8. Discrete particle simulations and experiments on the collapse of wet granular columns

    NASA Astrophysics Data System (ADS)

    Gabrieli, Fabio; Artoni, Riccardo; Santomaso, Andrea; Cola, Simonetta

    2013-10-01

    Small quantities of liquid in a granular material control the flow dynamics as well as the triggering and jamming phases. In order to study this problem, some experimental collapse tests conducted in a rectangular box were reproduced with a 1:1 scale numerical model using the Discrete Element Method. In simulations the effect of the capillary bridges has been investigated implementing a mid-range attractive force between particles based on the minimum energy approach. Also a bonding-debonding mechanism was incorporated in the algorithm and the volume of each sessile drop on the particle surface was considered during its motion. The influence of some variables was investigated with respect to the final slope profiles and the runout lengths: the initial liquid content, the particle size, the solid density, the liquid surface tension, and the liquid-solid contact angle. Also the crucial effect of the confinement walls on the collapse phenomenon was investigated: wet particles adhere to the lateral walls providing a higher flow resistance in comparison to the same material in dry conditions. It was observed that particles with largest path-lengths are localized near the movable wall at a middle-height of the initial column sample. Other particles at the surface moves in a rigid way especially if they were wet and with a low solid density. The "fidelity" of each particle with respect to the nearest neighbours was evaluated allowing to recognize the emergence of clusters of particles and rigid parts, to extract the failure surface and to localize where debonding mechanisms concentrate in the wet case.

  9. Local Simulations of the Magnetorotational Instability in Core-collapse Supernovae

    NASA Astrophysics Data System (ADS)

    Masada, Youhei; Takiwaki, Tomoya; Kotake, Kei; Sano, Takayoshi

    2012-11-01

    Bearing in mind the application of core-collapse supernovae, we study the nonlinear properties of the magnetorotational instability (MRI) by means of three-dimensional simulations in the framework of a local shearing box approximation. By systematically changing the shear rates that symbolize the degree of differential rotation in nascent proto-neutron stars (PNSs), we derive a scaling relation between the turbulent stress sustained by the MRI and the shear-vorticity ratio. Our parametric survey shows a power-law scaling between the turbulent stress (langlangw totrangrang) and the shear-vorticity ratio (gq ) as langlangw totrangrangvpropg δ q with an index of δ ~ 0.5. The MRI-amplified magnetic energy has a similar scaling relative to the turbulent stress, while the Maxwell stress has a slightly smaller power-law index (~0.36). By modeling the effect of viscous heating rates from MRI turbulence, we show that the stronger magnetic fields, or the larger shear rates initially imposed, lead to higher dissipation rates. For a rapidly rotating PNS with a spin period in milliseconds and with strong magnetic fields of 1015 G, the energy dissipation rate is estimated to exceed 1051 erg s-1. Our results suggest that the conventional magnetohydrodynamic (MHD) mechanism of core-collapse supernovae is likely to be affected by MRI-driven turbulence, which we speculate, on the one hand, could harm the MHD-driven explosions due to the dissipation of the shear rotational energy at the PNS surface; or, on the other hand, its energy deposition might be potentially favorable for the working of the neutrino-heating mechanism.

  10. Simulation of phase structures

    SciTech Connect

    Lawson, J.

    1995-04-20

    This memo outlines a procedure developed by the author to extract information from phase measurements and produce a simulated phase structure for use in modeling optical systems, including characteristic optics for the Beamlet and NIF laser systems. The report includes an IDL program listing.

  11. Multimessenger signals of long-term core-collapse supernova simulations: synergetic observation strategies

    NASA Astrophysics Data System (ADS)

    Nakamura, Ko; Horiuchi, Shunsaku; Tanaka, Masaomi; Hayama, Kazuhiro; Takiwaki, Tomoya; Kotake, Kei

    2016-09-01

    The next Galactic supernova is expected to bring great opportunities for the direct detection of gravitational waves (GW), full flavour neutrinos, and multiwavelength photons. To maximize the science return from such a rare event, it is essential to have established classes of possible situations and preparations for appropriate observations. To this end, we use a long-term numerical simulation of the core-collapse supernova (CCSN) of a 17 M⊙ red supergiant progenitor to self-consistently model the multimessenger signals expected in GW, neutrino, and electromagnetic messengers. This supernova model takes into account the formation and evolution of a protoneutron star, neutrino-matter interaction, and neutrino transport, all within a two-dimensional shock hydrodynamics simulation. With this, we separately discuss three situations: (i) a CCSN at the Galactic Center, (ii) an extremely nearby CCSN within hundreds of parsecs, and (iii) a CCSN in nearby galaxies within several Mpc. These distance regimes necessitate different strategies for synergistic observations. In a Galactic CCSN, neutrinos provide strategic timing and pointing information. We explore how these in turn deliver an improvement in the sensitivity of GW analyses and help to guarantee observations of early electromagnetic signals. To facilitate the detection of multimessenger signals of CCSNe in extremely nearby and extragalactic distances, we compile a list of nearby red supergiant candidates and a list of nearby galaxies with their expected CCSN rates. By exploring the sequential multimessenger signals of a nearby CCSN, we discuss preparations for maximizing successful studies of such an unprecedented stirring event.

  12. Should One Use the Ray-by-Ray Approximation in Core-collapse Supernova Simulations?

    NASA Astrophysics Data System (ADS)

    Skinner, M. Aaron; Burrows, Adam; Dolence, Joshua C.

    2016-11-01

    We perform the first self-consistent, time-dependent, multi-group calculations in two dimensions (2D) to address the consequences of using the ray-by-ray+ transport simplification in core-collapse supernova simulations. Such a dimensional reduction is employed by many researchers to facilitate their resource-intensive calculations. Our new code (Fornax) implements multi-D transport, and can, by zeroing out transverse flux terms, emulate the ray-by-ray+ scheme. Using the same microphysics, initial models, resolution, and code, we compare the results of simulating 12, 15, 20, and 25 M ⊙ progenitor models using these two transport methods. Our findings call into question the wisdom of the pervasive use of the ray-by-ray+ approach. Employing it leads to maximum post-bounce/pre-explosion shock radii that are almost universally larger by tens of kilometers than those derived using the more accurate scheme, typically leaving the post-bounce matter less bound and artificially more “explodable.” In fact, for our 25 M ⊙ progenitor, the ray-by-ray+ model explodes, while the corresponding multi-D transport model does not. Therefore, in two dimensions, the combination of ray-by-ray+ with the axial sloshing hydrodynamics that is a feature of 2D supernova dynamics can result in quantitatively, and perhaps qualitatively, incorrect results.

  13. Micron-scale Reactive Atomistic Simulation of Void Collapse and Hotspot Growth in PETN

    NASA Astrophysics Data System (ADS)

    Thompson, Aidan; Shan, Tzu-Ray; Wixom, Ryan

    2015-06-01

    Material defects and other heterogeneities such as dislocations, micro-porosity, and grain boundaries play key roles in the shock-induced initiation of detonation in energetic materials. We performed non-equilibrium molecular dynamics simulations to explore the effect of nanoscale voids on hotspot growth and initiation in micron-scale pentaerythritol tetranitrate (PETN) crystals under weak shock loading (Up = 1.25 km/s; Us = 4.5 km/s). We used the ReaxFF potential implemented in LAMMPS. We built a pseudo-2D PETN crystal with dimensions 0.3 μm × 0.22 μm × 1.3 nm containing a 20 nm cylindrical void. Once the initial shockwave traversed the entire sample, the shock-front absorbing boundary condition was applied, allowing the simulation to continue beyond 1 nanosecond. Results show an exponentially increasing hotspot growth rate. The hotspot morphology is initially symmetric about the void axis, but strong asymmetry develops at later times, due to strong coupling between exothermic chemistry, temperature, and divergent secondary shockwaves emanating from the collapsing void. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. DOE National Nuclear Security Administration under Contract DE-AC04-94AL85000.

  14. ON THE REQUIREMENTS FOR REALISTIC MODELING OF NEUTRINO TRANSPORT IN SIMULATIONS OF CORE-COLLAPSE SUPERNOVAE

    SciTech Connect

    Lentz, Eric J.; Mezzacappa, Anthony; Hix, W. Raphael; Messer, O. E. Bronson; Liebendoerfer, Matthias; Bruenn, Stephen W. E-mail: mezzacappaa@ornl.gov

    2012-03-01

    We have conducted a series of numerical experiments with the spherically symmetric, general relativistic, neutrino radiation hydrodynamics code AGILE-BOLTZTRAN to examine the effects of several approximations used in multidimensional core-collapse supernova simulations. Our code permits us to examine the effects of these approximations quantitatively by removing, or substituting for, the pieces of supernova physics of interest. These approximations include: (1) using Newtonian versus general relativistic gravity, hydrodynamics, and transport; (2) using a reduced set of weak interactions, including the omission of non-isoenergetic neutrino scattering, versus the current state-of-the-art; and (3) omitting the velocity-dependent terms, or observer corrections, from the neutrino Boltzmann kinetic equation. We demonstrate that each of these changes has noticeable effects on the outcomes of our simulations. Of these, we find that the omission of observer corrections is particularly detrimental to the potential for neutrino-driven explosions and exhibits a failure to conserve lepton number. Finally, we discuss the impact of these results on our understanding of current, and the requirements for future, multidimensional models.

  15. Ion acoustic wave collapse via two-ion wave decay: 2D Vlasov simulation and theory

    NASA Astrophysics Data System (ADS)

    Chapman, Thomas; Berger, Richard; Banks, Jeffrey; Brunner, Stephan

    2015-11-01

    The decay of ion acoustic waves (IAWs) via two-ion wave decay may transfer energy from the electric field of the IAWs to the particles, resulting in a significant heating of resonant particles. This process has previously been shown in numerical simulations to decrease the plasma reflectivity due to stimulated Brillouin scattering. Two-ion wave decay is a fundamental property of ion acoustic waves that occurs over most if not all of the parameter space of relevance to inertial confinement fusion experiments, and can lead to a sudden collapse of IAWs. The treatment of all species kinetically, and in particular the electrons, is required to describe the decay process correctly. We present fully kinetic 2D+2V Vlasov simulations of IAWs undergoing decay to a highly nonlinear turbulent state using the code LOKI. The scaling of the decay rate with characteristic plasma parameters and wave amplitude is shown. A new theory describing two-ion wave decay in 2D, that incorporates key kinetic properties of the electrons, is presented and used to explain quantitatively for the first time the observed decay of IAWs. Work performed under auspices of U.S. DoE by LLNL, Contract DE-AC52-07NA2734. Funded by LDRD 15-ERD-038 and supported by LLNL Grand Challenge allocation.

  16. GENERAL-RELATIVISTIC SIMULATIONS OF THREE-DIMENSIONAL CORE-COLLAPSE SUPERNOVAE

    SciTech Connect

    Ott, Christian D.; Abdikamalov, Ernazar; Moesta, Philipp; Haas, Roland; Drasco, Steve; O'Connor, Evan P.; Reisswig, Christian; Meakin, Casey A.; Schnetter, Erik

    2013-05-10

    We study the three-dimensional (3D) hydrodynamics of the post-core-bounce phase of the collapse of a 27 M{sub Sun} star and pay special attention to the development of the standing accretion shock instability (SASI) and neutrino-driven convection. To this end, we perform 3D general-relativistic simulations with a three-species neutrino leakage scheme. The leakage scheme captures the essential aspects of neutrino cooling, heating, and lepton number exchange as predicted by radiation-hydrodynamics simulations. The 27 M{sub Sun} progenitor was studied in 2D by Mueller et al., who observed strong growth of the SASI while neutrino-driven convection was suppressed. In our 3D simulations, neutrino-driven convection grows from numerical perturbations imposed by our Cartesian grid. It becomes the dominant instability and leads to large-scale non-oscillatory deformations of the shock front. These will result in strongly aspherical explosions without the need for large-scale SASI shock oscillations. Low-l-mode SASI oscillations are present in our models, but saturate at small amplitudes that decrease with increasing neutrino heating and vigor of convection. Our results, in agreement with simpler 3D Newtonian simulations, suggest that once neutrino-driven convection is started, it is likely to become the dominant instability in 3D. Whether it is the primary instability after bounce will ultimately depend on the physical seed perturbations present in the cores of massive stars. The gravitational wave signal, which we extract and analyze for the first time from 3D general-relativistic models, will serve as an observational probe of the postbounce dynamics and, in combination with neutrinos, may allow us to determine the primary hydrodynamic instability.

  17. Nuclear structure and the fate of core collapse (Type II) supernova

    NASA Astrophysics Data System (ADS)

    Gai, Moshe

    2014-08-01

    For a long time Gerry Brown and his collaborator Hans Bethe considered the question of the final fate of a core collapse (Type II) supernova. Recalling ideas from nuclear structure on Kaon condensate and a soft equation of state of the dense nuclear matter they concluded that progenitor stars with mass as low as 17-18M⊙ (including supernova 1987A) could collapse to a small mass black hole with a mass just beyond 1.5M⊙, the upper bound they derive for a neutron star. We discuss another nuclear structure effect that determines the carbon to oxygen ratio (C/O) at the end of helium burning. This ratio also determines the fate of a Type II supernova with a carbon rich progenitor star producing a neutron star and oxygen rich collapsing to a black hole. While the C/O ratio is one of the most important nuclear inputs to stellar evolution it is still not known with sufficient accuracy. We discuss future efforts to measure with gamma-beam and TPC detector of the C12(α,γ)O16 reaction that determines the C/O ratio in stellar helium burning.

  18. Estimating structural collapse fragility of generic building typologies using expert judgment

    USGS Publications Warehouse

    Jaiswal, Kishor; Wald, David J.; Perkins, David M.; Aspinall, Willy P.; Kiremidjian, Anne S.

    2014-01-01

    The structured expert elicitation process proposed by Cooke (1991), hereafter referred to as Cooke's approach, is applied for the first time in the realm of structural collapse-fragility assessment for selected generic construction types. Cooke's approach works on the principle of objective calibration scoring of judgments couple with hypothesis testing used in classical statistics. The performance-based scoring system reflects the combined measure of an expert's informativeness about variables in the problem are under consideration, and their ability to enumerate, in a statistically accurate way through expressing their true beliefs, the quantitative uncertainties associated with their assessments. We summarize the findings of an expert elicitation workshop in which a dozen earthquake-engineering professionals from around the world were engaged to estimate seismic collapse fragility for generic construction types. Development of seismic collapse fragility-functions was accomplished by combining their judgments using weights derived from Cooke's method. Although substantial effort was needed to elicit the inputs of these experts successfully, we anticipate that the elicitation strategy described here will gain momentum in a wide variety of earthquake seismology and engineering hazard and risk analyses where physical model and data limitations are inherent and objective professional judgment can fill gaps.

  19. Structure of tracheae and the functional implications for collapse in the American cockroach.

    PubMed

    Webster, Matthew R; Socha, John J; Teresi, Luciano; Nardinocchi, Paola; De Vita, Raffaella

    2015-12-01

    The tracheal tubes of insects are complex and heterogeneous composites with a microstructural organization that affects their function as pumps, valves, or static conduits within the respiratory system. In this study, we examined the microstructure of the primary thoracic tracheae of the American cockroach (Periplaneta americana) using a combination of scanning electron microscopy and light microscopy. The organization of the taenidia, which represents the primary source of structural reinforcement of the tracheae, was analyzed. We found that the taenidia were more disorganized in the regions of highest curvature of the tracheal tube. We also used a simple finite element model to explore the effect of cross-sectional shape and distribution of taenidia on the collapsibility of the tracheae. The eccentricity of the tracheal cross-section had a stronger effect on the collapse properties than did the distribution of taenidia. The combination of the macro-scale geometry, meso-scale heterogeneity, and microscale organization likely enables rhythmic tracheal compression during respiration, ultimately driving oxygen-rich air to cells and tissues throughout the insect body. The material design principles of these natural composites could potentially aid in the development of new bio-inspired microfluidic systems based on the differential collapse of tracheae-like networks.

  20. Structure of tracheae and the functional implications for collapse in the American cockroach.

    PubMed

    Webster, Matthew R; Socha, John J; Teresi, Luciano; Nardinocchi, Paola; De Vita, Raffaella

    2015-12-01

    The tracheal tubes of insects are complex and heterogeneous composites with a microstructural organization that affects their function as pumps, valves, or static conduits within the respiratory system. In this study, we examined the microstructure of the primary thoracic tracheae of the American cockroach (Periplaneta americana) using a combination of scanning electron microscopy and light microscopy. The organization of the taenidia, which represents the primary source of structural reinforcement of the tracheae, was analyzed. We found that the taenidia were more disorganized in the regions of highest curvature of the tracheal tube. We also used a simple finite element model to explore the effect of cross-sectional shape and distribution of taenidia on the collapsibility of the tracheae. The eccentricity of the tracheal cross-section had a stronger effect on the collapse properties than did the distribution of taenidia. The combination of the macro-scale geometry, meso-scale heterogeneity, and microscale organization likely enables rhythmic tracheal compression during respiration, ultimately driving oxygen-rich air to cells and tissues throughout the insect body. The material design principles of these natural composites could potentially aid in the development of new bio-inspired microfluidic systems based on the differential collapse of tracheae-like networks. PMID:26584154

  1. Black hole collapse simulated by vacuum fluctuations with a moving semitransparent mirror

    SciTech Connect

    Haro, Jaume; Elizalde, Emilio

    2008-02-15

    Creation of scalar massless particles in two-dimensional Minkowski space-time--as predicted by the dynamical Casimir effect--is studied for the case of a semitransparent mirror initially at rest, then accelerating for some finite time, along a trajectory that simulates a black hole collapse (defined by Walker and Carlitz and Willey), and finally moving with constant velocity. When the reflection and transmission coefficients are those in the model proposed by Barton, Calogeracos, and Nicolaevici [r({omega})=-i{alpha}/({omega}+i{alpha}) and s({omega})={omega}/({omega}+i{alpha}), with {alpha}{>=}0], the Bogoliubov coefficients on the backside of the mirror can be computed exactly. This allows us to prove that, when {alpha} is very large (as in the case of an ideal, perfectly reflecting mirror) a thermal emission of scalar massless particles obeying Bose-Einstein statistics is radiated from the mirror (a blackbody radiation), in accordance with results previously obtained in the literature. However, when {alpha} is finite (semitransparent mirror, a physically realistic situation) the striking result is obtained that the thermal emission of scalar massless particles obeys Fermi-Dirac statistics. We also show here that the reverse change of statistics takes place in a bidimensional fermionic model for massless particles, namely, that the Fermi-Dirac statistics for the completely reflecting situation will turn into the Bose-Einstein statistics for a partially reflecting, physical mirror.

  2. INDUCED ROTATION IN THREE-DIMENSIONAL SIMULATIONS OF CORE-COLLAPSE SUPERNOVAE: IMPLICATIONS FOR PULSAR SPINS

    SciTech Connect

    Rantsiou, Emmanouela; Burrows, Adam; Nordhaus, Jason; Almgren, Ann E-mail: burrows@astro.princeton.edu E-mail: asalmgren@lbl.gov

    2011-05-01

    It has been suggested that the observed rotation periods of radio pulsars might be induced by a non-axisymmetric spiral-mode instability in the turbulent region behind the stalled supernova bounce shock, even if the progenitor core was not initially rotating. In this paper, using the three-dimensional Adaptive Mesh Refinement code CASTRO with a realistic progenitor and equation of state and a simple neutrino heating and cooling scheme, we present a numerical study of the evolution in three dimensions of the rotational profile of a supernova core from collapse, through bounce and shock stagnation, to delayed explosion. By the end of our simulation ({approx}420 ms after core bounce), we do not witness significant spin-up of the proto-neutron star core left behind. However, we do see the development before the explosion of strong differential rotation in the turbulent gain region between the core and stalled shock. Shells in this region acquire high spin rates that reach {approx}150 Hz, but this region contains too little mass and angular momentum to translate, even if left behind, into rapid rotation for the full neutron star. We also find that much of the induced angular momentum is likely to be ejected in the explosion, and moreover that even if the optimal amount of induced angular momentum is retained in the core, the resulting spin period is likely to be quite modest. Nevertheless, induced periods of seconds are possible.

  3. Three-dimensional simulations of SASI- and convection-dominated core-collapse supernovae

    NASA Astrophysics Data System (ADS)

    Fernández, Rodrigo

    2015-09-01

    We investigate the effect of dimensionality on the transition to explosion in neutrino-driven core-collapse supernovae. Using parametrized hydrodynamic simulations of the stalled supernova shock in one, two (2D), and three spatial dimensions (3D), we systematically probe the extent to which hydrodynamic instabilities alone can tip the balance in favour of explosion. In particular, we focus on systems that are well into the regimes where the standing accretion shock instability (SASI) or neutrino-driven convection dominates the dynamics. We find that SASI-dominated models can explode with up to ˜20 per cent lower neutrino luminosity in 3D than in 2D, with the magnitude of this difference decreasing with increasing resolution. This improvement in explosion conditions is related to the ability of spiral modes to generate more non-radial kinetic energy than a single sloshing mode, increasing the size of the average shock radius, and hence generating better conditions for the formation of large-scale, high-entropy bubbles. In contrast, convection-dominated explosions show a smaller difference in their critical heating rate between 2D and 3D (<8 per cent), in agreement with previous studies. The ability of our numerical implementation to maintain arbitrary symmetries is quantified with a set of SASI-based tests. We discuss implications for the diversity of explosion paths in a realistic supernova environment.

  4. Triplex structures induce DNA double strand breaks via replication fork collapse in NER deficient cells

    PubMed Central

    Kaushik Tiwari, Meetu; Adaku, Nneoma; Peart, Natoya; Rogers, Faye A.

    2016-01-01

    Structural alterations in DNA can serve as natural impediments to replication fork stability and progression, resulting in DNA damage and genomic instability. Naturally occurring polypurine mirror repeat sequences in the human genome can create endogenous triplex structures evoking a robust DNA damage response. Failures to recognize or adequately process these genomic lesions can result in loss of genomic integrity. Nucleotide excision repair (NER) proteins have been found to play a prominent role in the recognition and repair of triplex structures. We demonstrate using triplex-forming oligonucleotides that chromosomal triplexes perturb DNA replication fork progression, eventually resulting in fork collapse and the induction of double strand breaks (DSBs). We find that cells deficient in the NER damage recognition proteins, XPA and XPC, accumulate more DSBs in response to chromosomal triplex formation than NER-proficient cells. Furthermore, we demonstrate that XPC-deficient cells are particularly prone to replication-associated DSBs in the presence of triplexes. In the absence of XPA or XPC, deleterious consequences of triplex-induced genomic instability may be averted by activating apoptosis via dual phosphorylation of the H2AX protein. Our results reveal that damage recognition by XPC and XPA is critical to maintaining replication fork integrity and preventing replication fork collapse in the presence of triplex structures. PMID:27298253

  5. Subsurface architecture of a strike-slip collapse structure: insights from Ilopango caldera, El Salvador

    NASA Astrophysics Data System (ADS)

    Saxby, Jennifer; Gottsmann, Joachim; Cashman, Katherine; Gutierrez, Eduardo

    2016-04-01

    While most calderas are created by roof collapse along ring-like faults into an emptying magma reservoir during a large and violent explosive eruption, an additional condition for caldera formation may be tectonically induced extensional stresses. Here we provide geophysical insights into the shallow sub-volcanic plumbing system of a collapse caldera in a major strike-slip tectonic setting by inverting Bouguer gravity data from the Ilopango caldera in El Salvador. Despite a long history of catastrophic eruptions with the most recent in 500 A.D., the internal architecture of the caldera has not been investigated, although studies of the most recent eruption have not identified the ring faults commonly associated with caldera collapse. The gravity data show that low-density material aligned along the principal stress orientations of the El Salvador Fault Zone (ESFZ) forms a pronounced gravity low beneath the caldera. Extending to around 6 km depth, the low density structure likely maps a complex stacked shallow plumbing system composed of magmatic and fractured hydrothermal reservoirs. A substantial volume of the plumbing system must be composed of a vapour phase to explain the modeled negative density contrasts. We use these constraints to map the possible multi-phase parameter space contributing to the subsurface architecture of the caldera and propose that the local extension along the complex ESFZ controls accumulation, ascent and eruption of magma at Ilopango. The data further suggest that future eruptions at Ilopango could be facilitated by rapid rise of magma along conjugate fault damage zones through a mechanically weak crust under tension. This may explain the absence of clear ring fault structures at the caldera.

  6. Infilled masonry walls contribution in mitigating progressive collapse of multistory reinforced concrete structures according to UFC guidelines

    NASA Astrophysics Data System (ADS)

    Helmy, Huda; Hadhoud, Hamed; Mourad, Sherif

    2015-09-01

    A structure is subjected to progressive collapse when an element fails, resulting in failure of adjoining structural elements which, in their turn, cause further structural failure leading eventually to partial or total collapse. The failure of a primary vertical support might occur due to extreme loadings such as bomb explosion in a terrorist attack, gas explosion and huge impact of a car in the parking area. Different guidelines such as the General Services Administration (GSA 2003) and the Unified Facilities Criteria (UFC 2009) addressed the structural progressive collapse due to the sudden loss of a main vertical support. In the current study, a progressive collapse assessment according to the UFC guidelines is carried out for a typical ten-story reinforced concrete framed structure designed according to codes [(ACI 318-08) and (ASCE 7-10)] for minimum design loads for buildings and other structures. Fully nonlinear dynamic analysis for the structure was carried out using Applied Element Method (AEM). The investigated cases included the removal of a corner column, an edge column, an edge shear wall, internal columns and internal shear wall. The numerical analysis showed that simplification of the problem into 3D bare frames would lead to uneconomical design. It was found for the studied case that, the infilled masonry walls have a valuable contribution in mitigating progressive collapse of the reinforced concrete framed structures. Neglecting these walls would lead to uneconomical design.

  7. Relativistic MHD simulations of core-collapse GRB jets: 3D instabilities and magnetic dissipation

    NASA Astrophysics Data System (ADS)

    Bromberg, Omer; Tchekhovskoy, Alexander

    2016-02-01

    Relativistic jets are associated with extreme astrophysical phenomena, like the core collapse of massive stars in gamma-ray bursts (GRBs) and the accretion on to supermassive black holes in active galactic nuclei. It is generally accepted that these jets are powered electromagnetically, by the magnetized rotation of a central compact object (black hole or neutron star). However, how the jets produce the observed emission and survive the propagation for many orders of magnitude in distance without being disrupted by current-driven instabilities is the subject of active debate. We carry out time-dependent 3D relativistic magnetohydrodynamic (MHD) simulations of relativistic, Poynting-flux-dominated jets. The jets are launched self-consistently by the rotation of a strongly magnetized central object. This determines the natural degree of azimuthal magnetic field winding, a crucial factor that controls jet stability. We find that the jets are susceptible to two types of instability: (i) a global, external kink mode that grows on long time-scales. It bodily twists the jet, reducing its propagation velocity. We show analytically that in flat density profiles, like the ones associated with galactic cores, the external mode grows and may stall the jet. In the steep profiles of stellar envelopes the external kink weakens as the jet propagates outward. (ii) a local, internal kink mode that grows over short time-scales and causes small-angle magnetic reconnection and conversion of about half of the jet electromagnetic energy flux into heat. We suggest that internal kink instability is the main dissipation mechanism responsible for powering GRB prompt emission.

  8. Axisymmetric Ab Initio Core-Collapse Supernova Simulations of 12--25 Solar Mass Stars

    SciTech Connect

    Bruenn, S. W.; Mezzacappa, Anthony; Hix, William Raphael; Lentz, E. J.; Messer, Bronson; Lingerfelt, Eric J; Blondin, J. M.; Endeve, Eirik; Marronetti, Pedro; Yakunin, Konstantin

    2013-01-01

    We present an overview of four ab initio axisymmetric core-collapse supernova simulations employing detailed spectral neutrino transport computed with our CHIMERA code and initiated from Woosley & Heger (2007) progenitors of mass 12, 15, 20, and 25 M_sun. All four models exhibit shock revival over ~ 200 ms (leading to the possibility of explosion), driven by neutrino energy deposition. Hydrodynamic instabilities that impart substantial asymmetries to the shock aid these revivals, with convection appearing first in the 12 solar mass model and the standing accretion shock instability (SASI) appearing first in the 25 solar mass model. Three of the models have developed pronounced prolate morphologies (the 20 solar mass model has remained approximately spherical). By 500 ms after bounce the mean shock radii in all four models exceed 3,000 km and the diagnostic explosion energies are 0.33, 0.66, 0.65, and 0.70 Bethe (B=10^{51} ergs) for the 12, 15, 20, and 25 solar mass models, respectively, and are increasing. The three least massive of our models are already sufficiently energetic to completely unbind the envelopes of their progenitors (i.e., to explode), as evidenced by our best estimate of their explosion energies, which first become positive at 320, 380, and 440 ms after bounce. By 850 ms the 12 solar mass diagnostic explosion energy has saturated at 0.38 B, and our estimate for the final kinetic energy of the ejecta is ~ 0.3 B, which is comparable to observations for lower-mass progenitors.

  9. Charge-controlled nano-structuring in partially collapsed star-shaped macromolecules.

    PubMed

    Uhlík, Filip; Košovan, Peter; Zhulina, Ekaterina B; Borisov, Oleg V

    2016-05-25

    Hydrophobic polyelectrolytes exhibit intra-molecular nano-scale self-organization instead of macroscopic phase separation because of the interplay between short-range hydrophobic attraction and long-range electrostatic repulsion. We aim to unravel how the morphology of the intra-molecular nanostructures can be controlled through the topology of the macromolecule on one hand and by adjustable ionization on the other hand. Specifically, we focus on hydrophobic star-branched polyelectrolytes, composed of either strong or weak acidic monomers. While both collapse in a globule when uncharged, and expand to full stretching of arms at high ionization, they exhibit quite different intermediate scenarios. For the strong ones, we observe the formation of bundles of arms as the main structural motif, and for the weak ones the intramolecular micelle-like structure is found at the same overall charge of the macromolecule. Here intramolecular disproportionation leaves some arms in a collapsed virtually neutral core, while others are substantially ionized and stretched in the corona.

  10. Charge-controlled nano-structuring in partially collapsed star-shaped macromolecules.

    PubMed

    Uhlík, Filip; Košovan, Peter; Zhulina, Ekaterina B; Borisov, Oleg V

    2016-05-25

    Hydrophobic polyelectrolytes exhibit intra-molecular nano-scale self-organization instead of macroscopic phase separation because of the interplay between short-range hydrophobic attraction and long-range electrostatic repulsion. We aim to unravel how the morphology of the intra-molecular nanostructures can be controlled through the topology of the macromolecule on one hand and by adjustable ionization on the other hand. Specifically, we focus on hydrophobic star-branched polyelectrolytes, composed of either strong or weak acidic monomers. While both collapse in a globule when uncharged, and expand to full stretching of arms at high ionization, they exhibit quite different intermediate scenarios. For the strong ones, we observe the formation of bundles of arms as the main structural motif, and for the weak ones the intramolecular micelle-like structure is found at the same overall charge of the macromolecule. Here intramolecular disproportionation leaves some arms in a collapsed virtually neutral core, while others are substantially ionized and stretched in the corona. PMID:27140226

  11. Continuum viscoplastic simulation of a granular column collapse on large slopes : μ(I) rheology and lateral wall effects

    NASA Astrophysics Data System (ADS)

    Martin, Nathan; Mangeney, Anne; Ionescu, Ioan; Bouchut, Francois

    2016-04-01

    The description of the mechanical behaviour of granular flows and in particular of the static/flowing transition is still an open and challenging issue with strong implication for hazard assessment [{Delannay et al.}, 2016]. In particular, {detailed quantitative} comparison between numerical models and observations is necessary to go further in this direction. We simulate here dry granular flows resulting from the collapse of granular columns on an inclined channel (from horizontal to 22^o) and compare precisely the results with laboratory experiments performed by {Mangeney et al.} [2010] and {Farin et al.} [2014]. Incompressibility is assumed despite the dilatancy observed in the experiments (up to 10%). The 2-D model is based on the so-called μ(I) rheology that induces a Drucker-Prager yield stress and a variable viscosity. A nonlinear Coulomb friction term, representing the friction on the lateral walls of the channel is added to the model. We demonstrate that this term is crucial to accurately reproduce granular collapses on slopes higher than 10o whereas it remains of little effect on horizontal slope [{Martin et al.}, 2016]. We show that the use of a variable or a constant viscosity does not change significantly the results provided that these viscosities are of the same order [{Ionescu et al.}, 2015]. However, only a fine tuning of the constant viscosity (η = 1 Pa.s) makes it possible to predict the slow propagation phase observed experimentally on large slopes. This was not possible when using, without tuning, the variable viscosity calculated from the μ(I) rheology with the parameters estimated from experiments. Finally, we discuss the well-posedness of the model with variable and constant viscosity based in particular on the development of shear bands observed in the numerical simulations. References Delannay, R., Valance, A., Mangeney, A., Roche, O., and Richard, P., 2016. Granular and particle-laden flows: from laboratory experiments to field

  12. I35W collapse, rebuild, and structural health monitoring - challenges associated with structural health monitoring of bridge systems

    SciTech Connect

    French, C. E.; Hedegaard, B.; Shield, C. K.; Stolarski, H.

    2011-06-23

    During evening rush hour traffic on August 1, 2007, the major interstate highway bridge carrying I35W over the Mississippi River in Minneapolis catastrophically failed, tragically taking the lives of thirteen people and injuring many more. The steel truss bridge, constructed in 1967, was undergoing deck reconstruction during the collapse, and was estimated to carry more than 140,000 vehicles daily. This tragedy generated great interest in employment of structural health monitoring systems. The I35W St. Anthony Falls Bridge, a post-tensioned concrete box bridge constructed to replace the collapsed steel truss bridge, contains over 500 instruments to monitor the structural behavior. Numerical models of the bridge are being developed and calibrated to the collected data obtained from truck load tests and thermal effects. The data obtained over the first few years of monitoring are being correlated with the calibrated models and used to develop the baseline bridge behavior. This information is being used to develop a system to monitor and interpret the long-term behavior of the bridge. This paper describes the instrumentation, preliminary results from the data and model calibration, the plan for developing long-term monitoring capabilities, and the challenges associated with structural health monitoring of bridge systems. In addition, opportunities and directions for future research required to fully realize the objectives of structural health monitoring are described.

  13. High Structural Stability of Textile Implants Prevents Pore Collapse and Preserves Effective Porosity at Strain

    PubMed Central

    Klinge, Uwe; Otto, Jens; Mühl, Thomas

    2015-01-01

    Reinforcement of tissues by use of textiles is encouraged by the reduced rate of recurrent tissue dehiscence but for the price of an inflammatory and fibrotic tissue reaction to the implant. The latter mainly is affected by the size of the pores, whereas only sufficiently large pores are effective in preventing a complete scar entrapment. Comparing two different sling implants (TVT and SIS), which are used for the treatment of urinary incontinence, we can demonstrate that the measurement of the effective porosity reveals considerable differences in the textile construction. Furthermore the changes of porosity after application of a tensile load can indicate a structural instability, favouring pore collapse at stress and questioning the use for purposes that are not “tension-free.” PMID:25973427

  14. Progenitor-dependent Explosion Dynamics in Self-consistent, Axisymmetric Simulations of Neutrino-driven Core-collapse Supernovae

    NASA Astrophysics Data System (ADS)

    Summa, Alexander; Hanke, Florian; Janka, Hans-Thomas; Melson, Tobias; Marek, Andreas; Müller, Bernhard

    2016-07-01

    We present self-consistent, axisymmetric core-collapse supernova simulations performed with the Prometheus-Vertex code for 18 pre-supernova models in the range of 11–28 M ⊙, including progenitors recently investigated by other groups. All models develop explosions, but depending on the progenitor structure, they can be divided into two classes. With a steep density decline at the Si/Si–O interface, the arrival of this interface at the shock front leads to a sudden drop of the mass-accretion rate, triggering a rapid approach to explosion. With a more gradually decreasing accretion rate, it takes longer for the neutrino heating to overcome the accretion ram pressure and explosions set in later. Early explosions are facilitated by high mass-accretion rates after bounce and correspondingly high neutrino luminosities combined with a pronounced drop of the accretion rate and ram pressure at the Si/Si–O interface. Because of rapidly shrinking neutron star radii and receding shock fronts after the passage through their maxima, our models exhibit short advection timescales, which favor the efficient growth of the standing accretion-shock instability. The latter plays a supportive role at least for the initiation of the re-expansion of the stalled shock before runaway. Taking into account the effects of turbulent pressure in the gain layer, we derive a generalized condition for the critical neutrino luminosity that captures the explosion behavior of all models very well. We validate the robustness of our findings by testing the influence of stochasticity, numerical resolution, and approximations in some aspects of the microphysics.

  15. Progenitor-dependent Explosion Dynamics in Self-consistent, Axisymmetric Simulations of Neutrino-driven Core-collapse Supernovae

    NASA Astrophysics Data System (ADS)

    Summa, Alexander; Hanke, Florian; Janka, Hans-Thomas; Melson, Tobias; Marek, Andreas; Müller, Bernhard

    2016-07-01

    We present self-consistent, axisymmetric core-collapse supernova simulations performed with the Prometheus-Vertex code for 18 pre-supernova models in the range of 11-28 M ⊙, including progenitors recently investigated by other groups. All models develop explosions, but depending on the progenitor structure, they can be divided into two classes. With a steep density decline at the Si/Si-O interface, the arrival of this interface at the shock front leads to a sudden drop of the mass-accretion rate, triggering a rapid approach to explosion. With a more gradually decreasing accretion rate, it takes longer for the neutrino heating to overcome the accretion ram pressure and explosions set in later. Early explosions are facilitated by high mass-accretion rates after bounce and correspondingly high neutrino luminosities combined with a pronounced drop of the accretion rate and ram pressure at the Si/Si-O interface. Because of rapidly shrinking neutron star radii and receding shock fronts after the passage through their maxima, our models exhibit short advection timescales, which favor the efficient growth of the standing accretion-shock instability. The latter plays a supportive role at least for the initiation of the re-expansion of the stalled shock before runaway. Taking into account the effects of turbulent pressure in the gain layer, we derive a generalized condition for the critical neutrino luminosity that captures the explosion behavior of all models very well. We validate the robustness of our findings by testing the influence of stochasticity, numerical resolution, and approximations in some aspects of the microphysics.

  16. Sowing Black Hole Seeds: Forming Direct Collapse Black Holes With Realistic Lyman-Werner Radiation Fields in Cosmological Simulations

    NASA Astrophysics Data System (ADS)

    Holley-Bockelmann, Kelly; Dunn, Glenna; Bellovary, Jillian M.; Christensen, Charlotte

    2016-01-01

    Luminous quasars detected at redshifts z > 6 require that the first black holes form early and grow to ~109 solar masses within one Gyr. Our work uses cosmological simulations to study the formation and early growth of direct collapse black holes. In the pre-reionization epoch, molecular hydrogen (H2) causes gas to fragment and form Population III stars, but Lyman-Werner radiation can suppress H2 formation and allow gas to collapse directly into a massive black hole. The critical flux required to inhibit H2 formation, Jcrit, is hotly debated, largely due to the uncertainties in the source radiation spectrum, H2 self-shielding, and collisional dissociation rates. Here, we test the power of the direct collapse model in a non-uniform Lyman-Werner radiation field, using an updated version of the SPH+N-body tree code Gasoline with H2 non-equilibrium abundance tracking, H2 cooling, and a modern SPH implementation. We vary Jcrit from 30 to 104 J21 to study the effect on seed black holes, focusing on black hole formation as a function of environment, halo mass, metallicity, and proximity of the Lyman-Werner source. We discuss the constraints on massive black hole occupation fraction in the quasar epoch, and implications for reionization, high-redshift X-ray background radiation, and gravitational waves.

  17. An improved multipole approximation for self-gravity and its importance for core-collapse supernova simulations

    SciTech Connect

    Couch, Sean M.; Graziani, Carlo; Flocke, Norbert

    2013-12-01

    Self-gravity computation by multipole expansion is a common approach in problems such as core-collapse and Type Ia supernovae, where single large condensations of mass must be treated. The standard formulation of multipole self-gravity in arbitrary coordinate systems suffers from two significant sources of error, which we correct in the formulation presented in this article. The first source of error is due to the numerical approximation that effectively places grid cell mass at the central point of the cell, then computes the gravitational potential at that point, resulting in a convergence failure of the multipole expansion. We describe a new scheme that avoids this problem by computing gravitational potential at cell faces. The second source of error is due to sub-optimal choice of location for the expansion center, which results in angular power at high multipole l values in the gravitational field, requiring a high—and expensive—value of multipole cutoff l {sub max}. By introducing a global measure of angular power in the gravitational field, we show that the optimal coordinate for the expansion is the square-density-weighted mean location. We subject our new multipole self-gravity algorithm, implemented in the FLASH simulation framework, to two rigorous test problems: MacLaurin spheroids for which exact analytic solutions are known, and core-collapse supernovae. We show that key observables of the core-collapse simulations, particularly shock expansion, proto-neutron star motion, and momentum conservation, are extremely sensitive to the accuracy of the multipole gravity, and the accuracy of their computation is greatly improved by our reformulated solver.

  18. An Improved Multipole Approximation for Self-gravity and Its Importance for Core-collapse Supernova Simulations

    NASA Astrophysics Data System (ADS)

    Couch, Sean M.; Graziani, Carlo; Flocke, Norbert

    2013-12-01

    Self-gravity computation by multipole expansion is a common approach in problems such as core-collapse and Type Ia supernovae, where single large condensations of mass must be treated. The standard formulation of multipole self-gravity in arbitrary coordinate systems suffers from two significant sources of error, which we correct in the formulation presented in this article. The first source of error is due to the numerical approximation that effectively places grid cell mass at the central point of the cell, then computes the gravitational potential at that point, resulting in a convergence failure of the multipole expansion. We describe a new scheme that avoids this problem by computing gravitational potential at cell faces. The second source of error is due to sub-optimal choice of location for the expansion center, which results in angular power at high multipole l values in the gravitational field, requiring a high—and expensive—value of multipole cutoff l max. By introducing a global measure of angular power in the gravitational field, we show that the optimal coordinate for the expansion is the square-density-weighted mean location. We subject our new multipole self-gravity algorithm, implemented in the FLASH simulation framework, to two rigorous test problems: MacLaurin spheroids for which exact analytic solutions are known, and core-collapse supernovae. We show that key observables of the core-collapse simulations, particularly shock expansion, proto-neutron star motion, and momentum conservation, are extremely sensitive to the accuracy of the multipole gravity, and the accuracy of their computation is greatly improved by our reformulated solver.

  19. Convection, nucleosynthesis, and core collapse

    NASA Technical Reports Server (NTRS)

    Bazan, Grant; Arnett, David

    1994-01-01

    We use a piecewise parabolic method hydrodynamics code (PROMETHEUS) to study convective burning in two dimensions in an oxygen shell prior to core collapse. Significant mixing beyond convective boundaries determined by mixing-length theory brings fuel (C-12) into the convective regon, causing hot spots of nuclear burning. Plumes dominate the velocity structure. Finite perturbations arise in a region in which O-16 will be explosively burned to Ni-56 when the star explodes; the resulting instabilities and mixing are likely to distribute Ni-56 throughout the supernova envelope. Inhomogeneities in Y(sub e) may be large enough to affect core collapse and will affect explosive nucleosynthesis. The nature of convective burning is dramatically different from that assumed in one-dimensional simulations; quantitative estimates of nucleosynthetic yields, core masses, and the approach to core collapse will be affected.

  20. Voltage collapse in complex power grids

    PubMed Central

    Simpson-Porco, John W.; Dörfler, Florian; Bullo, Francesco

    2016-01-01

    A large-scale power grid's ability to transfer energy from producers to consumers is constrained by both the network structure and the nonlinear physics of power flow. Violations of these constraints have been observed to result in voltage collapse blackouts, where nodal voltages slowly decline before precipitously falling. However, methods to test for voltage collapse are dominantly simulation-based, offering little theoretical insight into how grid structure influences stability margins. For a simplified power flow model, here we derive a closed-form condition under which a power network is safe from voltage collapse. The condition combines the complex structure of the network with the reactive power demands of loads to produce a node-by-node measure of grid stress, a prediction of the largest nodal voltage deviation, and an estimate of the distance to collapse. We extensively test our predictions on large-scale systems, highlighting how our condition can be leveraged to increase grid stability margins. PMID:26887284

  1. Hydrothermal Vents in Yellowstone Lake: Chemical Fluxes, Siliceous Deposits, and Collapse Structures

    NASA Astrophysics Data System (ADS)

    Shanks, W. P.; Morgan, L. A.; Balistrieri, L.; Alt, J.; Meeker, G.

    2002-12-01

    The geochemistry of Yellowstone Lake is strongly influenced by sublacustrine hydrothermal vent activity. The hydrothermal source fluid is identified using Cl and dD data on water column and sublacustrine hydrothermal vent fluid samples. Silica-rich hydrothermal deposits occur on the lake bottom near active and presently inactive hydrothermal vents. Pipe- and flange-like deposits contain cemented and recrystallized diatoms and represent pathways for hydrothermal fluid migration. Another major type of hydrothermal deposit comprises hard, porous siliceous spires up to 7 m tall that occur in 15 m of water in Bridge Bay. Bridge Bay spires are hydrothermal silica deposits formed in place by growth of chimney-like features from lake-bottom hydrothermal vents. The Cl concentrations indicate that Yellowstone Lake water is about 1 percent hydrothermal source fluid and 99 percent inflowing stream water and that the flux is about 10 percent of the total hydrothermal water flux in Yellowstone National Park. With recent swath-sonar mapping studies that show numerous new hydrothermal features, Yellowstone Lake should now be considered one of the most significant hydrothermal basins in the Park. Many lake-bottom hydrothermal vents occur in small depressions that are clearly imaged on multibeam sonar, some of which are interpreted as collapse structures based on seismic reflection data. Sediments collected from such vents show chemical evidence of leaching of 60-70 wt. percent SiO2, which may result in volume reductions up to 80 percent and provides a mechanism for vent structure formation.

  2. Fluid-Structure Analysis of Opening Phenomena in a Collapsible Airway

    NASA Astrophysics Data System (ADS)

    Ghadiali, Samir N.; Banks, Julie; Swarts, J. Douglas

    2003-11-01

    Several physiological functions require the opening of collapsed respiratory airways. For example, the Eustachian tube (ET), which connects the nasopharynx with the middle ear (ME), must be periodically opened to maintain ambient ME pressures. These openings normally occur during swallowing when muscle contraction deforms the surrounding soft tissue. The inability to open the ET results in the most common and costly ear disease in children, Otitis Media. Although tissue-based treatments have been purposed, the influence of the various tissue mechanical properties on flow phenomena has not been investigated. A computational model of ET opening was developed using in-vivo structural data to investigate these fluid-structure interactions. This model accounts for both tissue deformation and the resulting airflow in a non-circular conduit. Results indicate that ET opening is more sensitive to the applied muscle forces than elastic tissue properties. These models have therefore identified how different tissue elements alter ET opening phenomena, which elements should be targeted for treatment and the optimal mechanical properties of these tissue constructs. Research supported by NIH grant DC005345.

  3. Simulations of Non-spherical Bubble Collapse Dynamics in Viscous and Viscoelastic Media Near a Compliant Object

    NASA Astrophysics Data System (ADS)

    Rodriguez, Mauro; Johnsen, Eric

    2015-11-01

    Understanding the dynamics of cavitation bubbles and the shock waves emitted by their collapse in and near viscoelastic media is important for various naval and medical applications, particularly in the context of cavitation damage. Two examples are histotripsy, which utilizes this phenomenon for the ablation of pathogenic tissue, and erosion to elastomeric coatings on propellers. Although not fully understood, the damage mechanism combines the effect of the incoming pulses and cavitation produced by the high tension. Additionally, the influence of the shock on the material and the response of the material to the shock are not well known. A novel numerical approach for simulating shock and acoustic wave propagation in Zener-like viscoelastic media is proposed. This Eulerian method is based on a high-order accurate weighted essentially non-oscillatory scheme for shock capturing and introduces evolution equations for the components of the shear stress tensor. Validation studies between high-fidelity two-dimensional simulations of the bubble collapse dynamics for various experimental configurations (i.e. the viscous or viscoelastic material surrounding the bubble and the nearby compliant object are varied) will be presented. This work is supported by ONR grant N00014-12-1-0751.

  4. Three-dimensional simulations of dynamics of void collapse in energetic materials

    NASA Astrophysics Data System (ADS)

    Kapahi, A.; Udaykumar, H. S.

    2015-03-01

    This work presents the response of a porous heterogeneous energetic material subjected to severe loading conditions. Spherical voids are embedded in an otherwise homogeneous material with the mechanical properties of condensed phase explosives. The effect of imposed shocks on spherical (three-dimensional) voids is compared with the cylindrical (two-dimensional) voids studied in an earlier work, in terms of energy deposition and the maximum temperature reached in the material as the void collapses. It is observed that there is a significant rise in maximum temperature of the energetic material in the presence of spherical voids compared to cylindrical voids. In addition to increasing the maximum temperature, the three-dimensional effects also influence the energy distribution as the void collapses. This study also compares mutual void-void interactions by analyzing different relative positions between two voids for both cylindrical and spherical shapes. Apart from the comparison, this study reinforces the importance of micro-scale dynamics in understanding and quantifying the response of an energetic material to shock loading.

  5. From forced collapse to H ii region expansion in Mon R2: Envelope density structure and age determination with Herschel⋆

    NASA Astrophysics Data System (ADS)

    Didelon, P.; Motte, F.; Tremblin, P.; Hill, T.; Hony, S.; Hennemann, M.; Hennebelle, P.; Anderson, L. D.; Galliano, F.; Schneider, N.; Rayner, T.; Rygl, K.; Louvet, F.; Zavagno, A.; Könyves, V.; Sauvage, M.; André, Ph.; Bontemps, S.; Peretto, N.; Griffin, M.; González, M.; Lebouteiller, V.; Arzoumanian, D.; Bernard, J.-P.; Benedettini, M.; Di Francesco, J.; Men'shchikov, A.; Minier, V.; Nguyên Luong, Q.; Palmeirim, P.; Pezzuto, S.; Rivera-Ingraham, A.; Russeil, D.; Ward-Thompson, D.; White, G. J.

    2015-12-01

    Context. The surroundings of H ii regions can have a profound influence on their development, morphology, and evolution. This paper explores the effect of the environment on H ii regions in the MonR2 molecular cloud. Aims: We aim to investigate the density structure of envelopes surrounding H ii regions and to determine their collapse and ionisation expansion ages. The Mon R2 molecular cloud is an ideal target since it hosts an H ii region association, which has been imaged by the Herschel PACS and SPIRE cameras as part of the HOBYS key programme. Methods: Column density and temperature images derived from Herschel data were used together to model the structure of H ii bubbles and their surrounding envelopes. The resulting observational constraints were used to follow the development of the Mon R2 ionised regions with analytical calculations and numerical simulations. Results: The four hot bubbles associated with H ii regions are surrounded by dense, cold, and neutral gas envelopes, which are partly embedded in filaments. The envelope's radial density profiles are reminiscent of those of low-mass protostellar envelopes. The inner parts of envelopes of all four H ii regions could be free-falling because they display shallow density profiles: ρ(r) ∝ r- q with q ≤slant 1.5. As for their outer parts, the two compact H ii regions show a ρ(r) ∝ r-2 profile, which is typical of the equilibrium structure of a singular isothermal sphere. In contrast, the central UCH ii region shows a steeper outer profile, ρ(r) ∝ r-2.5, that could be interpreted as material being forced to collapse, where an external agent overwhelms the internal pressure support. Conclusions: The size of the heated bubbles, the spectral type of the irradiating stars, and the mean initial neutral gas density are used to estimate the ionisation expansion time, texp ~ 0.1 Myr, for the dense UCH ii and compact H ii regions and ~ 0.35 Myr for the extended H ii region. Numerical simulations with and

  6. From orogenic collapse to rifting ; structures of the South China Sea

    NASA Astrophysics Data System (ADS)

    Pubellier, M.; Chan, L. S.; Chamot Rooke, N.; Shen, W.; Ringenbach, J. C.

    2009-04-01

    The opening of the South China Sea has been a matter of debate for many years because of its internal structure, the differences between the conjugate margins and the variations of rifting and spreading directions. Although it is considered as being a back-arc basin, it is not sitting directly above a subduction zone, and the rifting process lasted for an unusually long duration. Among the specific characteristics is the early phase of rifting which took place early in place of the former Yanshanian andean-type mountain range. This stage is marked by narrow basins filled with deformed conglomerate, and initiated around 70My ago within a framework where the oblique subduction marked by igneous activity and ductile wrench faults, was replaced by orogenic collapse. The rifting stage is marked by Eocene syntectonic normal faults and occasional volcanics centres and has proceeded from NW-SE to NS extension. The NW stretching created at least two aborted basins which remained at rift stage. Extension was followed by spreading from 33 to ~20 Ma in the South China Sea. The ocean floor spreading also changed direction to NW-SE with a propagator inside the Sunda shelf from 20 to 17My ago. However the propagator opening implies that deformation is also taken by rifting around a southern wedge which in turn created strain inside the thinned crust. Another extension parallel to the margin is also observed althought the spreading was in process. The southward motion of the southern conjugate margin was later accommodated by its subduction beneath the NW Borneo wedge until completion of the Proto South China Sea subduction. Variations of rifting spreading through time and variations of structural styles are discussed in terms of boundary forces acting to the SE.

  7. Simulated effects of salt-mine collapse on ground-water flow and land subsidence in a glacial aquifer system, Livingston County, New York

    USGS Publications Warehouse

    Yager, Richard M.; Miller, Todd S.; Kappel, William M.

    2001-01-01

    This report describes the hydrogeology of the Genesee Valley and the effects of the ceiling collapse of the Retsof salt mine on the aquifer system. It discusses the origin and character of glacial sediments; the occurrence, flow directions, and chemical quality of water in the aquifer system before the collapse; the effects of the collapse on the aquifer system in terms of land subsidence, water-level declines, changes in water quality, and exsolution of natural gas, and design and calibration of the ground-water-flow model. It also presents results of flow-model simulations, including an estimated ground-water budget and graphs showing the simulated water-level recovery; and results of subsidence simulations, including maps and graphs showing the extent of land subsidence.

  8. The effect of dark matter resolution on the collapse of baryons in high-redshift numerical simulations

    NASA Astrophysics Data System (ADS)

    Regan, John A.; Johansson, Peter H.; Wise, John H.

    2015-06-01

    We examine the impact of dark matter particle resolution on the formation of a baryonic core in high-resolution adaptive mesh refinement simulations. We test the effect that both particle smoothing and particle splitting have on the hydrodynamic properties of a collapsing halo at high redshift (z > 20). Furthermore, we vary the background field intensity, with energy below the Lyman limit (<13.6 eV), as may be relevant for the case of metal-free star formation and supermassive black hole seed formation. We find that using particle splitting methods greatly increases our particle resolution without introducing any numerical noise and allows us to achieve converged results over a wide range of external background fields. Additionally, we find that for lower values of the background field a lower dark matter particle mass is required. We define the radius of the core as the point at which the enclosed baryonic mass dominates over the enclosed dark matter mass. For our simulations this results in Rcore ˜ 5 pc. We find that in order to produce converged results which are not affected by dark matter particles requires that the relationship Mcore/MDM > 100.0 be satisfied, where Mcore is the enclosed baryon mass within the core and MDM is the minimum dark matter particle mass. This ratio should provide a very useful starting point for conducting convergence tests before any production run simulations. We find that dark matter particle smoothing is a useful adjunct to already highly resolved simulations.

  9. Three dimensional core-collapse supernova simulated using a 15 M progenitor

    SciTech Connect

    Lentz, Eric J.; Bruenn, Stephen W.; Hix, W. Raphael; Mezzacappa, Anthony; Messer, O. E. Bronson; Endeve, Eirik; Blondin, John M.; Harris, J. Austin; Marronetti, Pedro; Yakunin, Konstantin N.

    2015-07-10

    We have performed ab initio neutrino radiation hydrodynamics simulations in three and two spatial dimensions (3D and 2D) of core-collapse supernovae from the same 15 M⊙ progenitor through 440 ms after core bounce. Both 3D and 2D models achieve explosions; however, the onset of explosion (shock revival) is delayed by ~100 ms in 3D relative to the 2D counterpart and the growth of the diagnostic explosion energy is slower. This is consistent with previously reported 3D simulations utilizing iron-core progenitors with dense mantles. In the ~100 ms before the onset of explosion, diagnostics of neutrino heating and turbulent kinetic energy favor earlier explosion in 2D. During the delay, the angular scale of convective plumes reaching the shock surface grows and explosion in 3D is ultimately lead by a single, large-angle plume, giving the expanding shock a directional orientation not dissimilar from those imposed by axial symmetry in 2D simulations. Finally, we posit that shock revival and explosion in the 3D simulation may be delayed until sufficiently large plumes form, whereas such plumes form more rapidly in 2D, permitting earlier explosions.

  10. Volcano electrical tomography unveils edifice collapse hazard linked to hydrothermal system structure and dynamics

    NASA Astrophysics Data System (ADS)

    Rosas-Carbajal, Marina; Komorowski, Jean-Christophe; Nicollin, Florence; Gibert, Dominique

    2016-07-01

    Catastrophic collapses of the flanks of stratovolcanoes constitute a major hazard threatening numerous lives in many countries. Although many such collapses occurred following the ascent of magma to the surface, many are not associated with magmatic reawakening but are triggered by a combination of forcing agents such as pore-fluid pressurization and/or mechanical weakening of the volcanic edifice often located above a low-strength detachment plane. The volume of altered rock available for collapse, the dynamics of the hydrothermal fluid reservoir and the geometry of incipient collapse failure planes are key parameters for edifice stability analysis and modelling that remain essentially hidden to current volcano monitoring techniques. Here we derive a high-resolution, three-dimensional electrical conductivity model of the La Soufrière de Guadeloupe volcano from extensive electrical tomography data. We identify several highly conductive regions in the lava dome that are associated to fluid saturated host-rock and preferential flow of highly acid hot fluids within the dome. We interpret this model together with the existing wealth of geological and geochemical data on the volcano to demonstrate the influence of the hydrothermal system dynamics on the hazards associated to collapse-prone altered volcanic edifices.

  11. Volcano electrical tomography unveils edifice collapse hazard linked to hydrothermal system structure and dynamics

    PubMed Central

    Rosas-Carbajal, Marina; Komorowski, Jean-Christophe; Nicollin, Florence; Gibert, Dominique

    2016-01-01

    Catastrophic collapses of the flanks of stratovolcanoes constitute a major hazard threatening numerous lives in many countries. Although many such collapses occurred following the ascent of magma to the surface, many are not associated with magmatic reawakening but are triggered by a combination of forcing agents such as pore-fluid pressurization and/or mechanical weakening of the volcanic edifice often located above a low-strength detachment plane. The volume of altered rock available for collapse, the dynamics of the hydrothermal fluid reservoir and the geometry of incipient collapse failure planes are key parameters for edifice stability analysis and modelling that remain essentially hidden to current volcano monitoring techniques. Here we derive a high-resolution, three-dimensional electrical conductivity model of the La Soufrière de Guadeloupe volcano from extensive electrical tomography data. We identify several highly conductive regions in the lava dome that are associated to fluid saturated host-rock and preferential flow of highly acid hot fluids within the dome. We interpret this model together with the existing wealth of geological and geochemical data on the volcano to demonstrate the influence of the hydrothermal system dynamics on the hazards associated to collapse-prone altered volcanic edifices. PMID:27457494

  12. Volcano electrical tomography unveils edifice collapse hazard linked to hydrothermal system structure and dynamics.

    PubMed

    Rosas-Carbajal, Marina; Komorowski, Jean-Christophe; Nicollin, Florence; Gibert, Dominique

    2016-01-01

    Catastrophic collapses of the flanks of stratovolcanoes constitute a major hazard threatening numerous lives in many countries. Although many such collapses occurred following the ascent of magma to the surface, many are not associated with magmatic reawakening but are triggered by a combination of forcing agents such as pore-fluid pressurization and/or mechanical weakening of the volcanic edifice often located above a low-strength detachment plane. The volume of altered rock available for collapse, the dynamics of the hydrothermal fluid reservoir and the geometry of incipient collapse failure planes are key parameters for edifice stability analysis and modelling that remain essentially hidden to current volcano monitoring techniques. Here we derive a high-resolution, three-dimensional electrical conductivity model of the La Soufrière de Guadeloupe volcano from extensive electrical tomography data. We identify several highly conductive regions in the lava dome that are associated to fluid saturated host-rock and preferential flow of highly acid hot fluids within the dome. We interpret this model together with the existing wealth of geological and geochemical data on the volcano to demonstrate the influence of the hydrothermal system dynamics on the hazards associated to collapse-prone altered volcanic edifices.

  13. Volcano electrical tomography unveils edifice collapse hazard linked to hydrothermal system structure and dynamics.

    PubMed

    Rosas-Carbajal, Marina; Komorowski, Jean-Christophe; Nicollin, Florence; Gibert, Dominique

    2016-01-01

    Catastrophic collapses of the flanks of stratovolcanoes constitute a major hazard threatening numerous lives in many countries. Although many such collapses occurred following the ascent of magma to the surface, many are not associated with magmatic reawakening but are triggered by a combination of forcing agents such as pore-fluid pressurization and/or mechanical weakening of the volcanic edifice often located above a low-strength detachment plane. The volume of altered rock available for collapse, the dynamics of the hydrothermal fluid reservoir and the geometry of incipient collapse failure planes are key parameters for edifice stability analysis and modelling that remain essentially hidden to current volcano monitoring techniques. Here we derive a high-resolution, three-dimensional electrical conductivity model of the La Soufrière de Guadeloupe volcano from extensive electrical tomography data. We identify several highly conductive regions in the lava dome that are associated to fluid saturated host-rock and preferential flow of highly acid hot fluids within the dome. We interpret this model together with the existing wealth of geological and geochemical data on the volcano to demonstrate the influence of the hydrothermal system dynamics on the hazards associated to collapse-prone altered volcanic edifices. PMID:27457494

  14. ON THE IMPACT OF THREE DIMENSIONS IN SIMULATIONS OF NEUTRINO-DRIVEN CORE-COLLAPSE SUPERNOVA EXPLOSIONS

    SciTech Connect

    Couch, Sean M.

    2013-09-20

    We present one-dimensional (1D), two-dimensional (2D), and three-dimensional (3D) hydrodynamical simulations of core-collapse supernovae including a parameterized neutrino heating and cooling scheme in order to investigate the critical core neutrino luminosity (L{sub crit}) required for explosion. In contrast to some previous works, we find that 3D simulations explode later than 2D simulations, and that L{sub crit} at fixed mass accretion rate is somewhat higher in three dimensions than in two dimensions. We find, however, that in two dimensions L{sub crit} increases as the numerical resolution of the simulation increases. In contrast to some previous works, we argue that the average entropy of the gain region is in fact not a good indicator of explosion but is rather a reflection of the greater mass in the gain region in two dimensions. We compare our simulations to semi-analytic explosion criteria and examine the nature of the convective motions in two dimensions and three dimensions. We discuss the balance between neutrino-driven buoyancy and drag forces. In particular, we show that the drag force will be proportional to a buoyant plume's surface area while the buoyant force is proportional to a plume's volume and, therefore, plumes with greater volume-to-surface-area ratios will rise more quickly. We show that buoyant plumes in two dimensions are inherently larger, with greater volume-to-surface-area ratios, than plumes in three dimensions. In the scenario that the supernova shock expansion is dominated by neutrino-driven buoyancy, this balance between buoyancy and drag forces may explain why 3D simulations explode later than 2D simulations and why L{sub crit} increases with resolution. Finally, we provide a comparison of our results with other calculations in the literature.

  15. Oxygen limitations on marine animal distributions and the collapse of epibenthic community structure during shoaling hypoxia.

    PubMed

    Chu, Jackson W F; Tunnicliffe, Verena

    2015-08-01

    Deoxygenation in the global ocean is predicted to induce ecosystem-wide changes. Analysis of multidecadal oxygen time-series projects the northeast Pacific to be a current and future hot spot of oxygen loss. However, the response of marine communities to deoxygenation is unresolved due to the lack of applicable data on component species. We repeated the same benthic transect (n = 10, between 45 and 190 m depths) over 8 years in a seasonally hypoxic fjord using remotely operated vehicles equipped with oxygen sensors to establish the lower oxygen levels at which 26 common epibenthic species can occur in the wild. By timing our surveys to shoaling hypoxia events, we show that fish and crustacean populations persist even in severe hypoxia (<0.5 mL L(-1) ) with no mortality effects but that migration of mobile species occurs. Consequently, the immediate response to hypoxia expansion is the collapse of community structure; normally partitioned distributions of resident species coalesced and localized densities increased. After oxygen renewal and formation of steep oxygen gradients, former ranges re-established. High frequency data from the nearby VENUS subsea observatory show the average oxygen level at our site declined by ~0.05 mL L(-1) year(-1) over the period of our study. The increased annual duration of the hypoxic (<1.4 mL L(-1) ) and severely hypoxic periods appears to reflect the oxygen dynamics demonstrated in offshore source waters and the adjacent Strait of Georgia. Should the current trajectory of oxygen loss continue, community homogenization and reduced suitable habitat may become the dominant state of epibenthic systems in the northeast Pacific. In situ oxygen occurrences were not congruent with lethal and sublethal hypoxia thresholds calculated across the literature for major taxonomic groups indicating that research biases toward laboratory studies on Atlantic species are not globally applicable. Region-specific hypoxia thresholds are necessary to

  16. Isotropic sources and attenuation structure: Nuclear tests, mine collapses, and Q

    NASA Astrophysics Data System (ADS)

    Ford, Sean Ricardo

    This dissertation investigates two different, but related, topics: isotropic sources and attenuation structure. The first section reports the analysis of explosions, earthquakes, and collapses in the western US using a regional time-domain full waveform inversion for the complete moment tensor. The events separate into specific populations according to their deviation from a pure double-couple and ratio of isotropic to deviatoric energy. We find that in the band of interest (0.02-0.10 Hz) the source-type is insensitive to small velocity model perturbations and several kilometers of incorrect depth when the signal-to-noise ratio (SNR) is greater than 5. However, error in the isotropic moment grows from 50% to 200% as the source depth decreases from 1 km to 200 m. We add an analysis of the Crandall Canyon Mine collapse that occurred on 6 August 2007 in Utah to our dataset. The results show that most of the recorded seismic wave energy is consistent with an underground collapse in the mine. We contrast the waveforms and moment tensor results of the Crandall Canyon Mine seismic event to a similar sized tectonic earthquake about 200 km away near Tremonton, Utah, that occurred on September 1, 2007 demonstrating the low frequency regional waveforms carry sufficient information to distinguish the source-type. Finally, confidence in the regional full moment tensor inversion solution is described via the introduction of the network sensitivity solution (NSS), which takes into account the unique station distribution, frequency band, and signal-to-noise ratio of a given event scenario. The method is tested for the well-recorded nuclear test, JUNCTION, at the Nevada Test Site and the October 2006 North Korea test, where the station coverage is poor and the event magnitude is small. Both events contain large isotropic components that are 60% of the total moment, though the NTS event is much better constrained than the North Korea test. The network solutions illustrate the effect

  17. Isotropic sources and attenuation structure: Nuclear tests, mine collapses, and Q

    NASA Astrophysics Data System (ADS)

    Ford, Sean Ricardo

    This dissertation investigates two different, but related, topics: isotropic sources and attenuation structure. The first section reports the analysis of explosions, earthquakes, and collapses in the western US using a regional time-domain full waveform inversion for the complete moment tensor. The events separate into specific populations according to their deviation from a pure double-couple and ratio of isotropic to deviatoric energy. We find that in the band of interest (0.02-0.10 Hz) the source-type is insensitive to small velocity model perturbations and several kilometers of incorrect depth when the signal-to-noise ratio (SNR) is greater than 5. However, error in the isotropic moment grows from 50% to 200% as the source depth decreases from 1 km to 200 m. We add an analysis of the Crandall Canyon Mine collapse that occurred on 6 August 2007 in Utah to our dataset. The results show that most of the recorded seismic wave energy is consistent with an underground collapse in the mine. We contrast the waveforms and moment tensor results of the Crandall Canyon Mine seismic event to a similar sized tectonic earthquake about 200 km away near Tremonton, Utah, that occurred on September 1, 2007 demonstrating the low frequency regional waveforms carry sufficient information to distinguish the source-type. Finally, confidence in the regional full moment tensor inversion solution is described via the introduction of the network sensitivity solution (NSS), which takes into account the unique station distribution, frequency band, and signal-to-noise ratio of a given event scenario. The method is tested for the well-recorded nuclear test, JUNCTION, at the Nevada Test Site and the October 2006 North Korea test, where the station coverage is poor and the event magnitude is small. Both events contain large isotropic components that are 60% of the total moment, though the NTS event is much better constrained than the North Korea test. The network solutions illustrate the effect

  18. Results from Core-collapse Simulations with Multi-dimensional, Multi-angle Neutrino Transport

    NASA Astrophysics Data System (ADS)

    Brandt, Timothy D.; Burrows, Adam; Ott, Christian D.; Livne, Eli

    2011-02-01

    We present new results from the only two-dimensional multi-group, multi-angle calculations of core-collapse supernova evolution. The first set of results from these calculations was published in 2008 by Ott et al. We have followed a nonrotating and a rapidly rotating 20 M sun model for ~400 ms after bounce. We show that the radiation fields vary much less with angle than the matter quantities in the region of net neutrino heating. This happens because most neutrinos are emitted from inner radiative regions and because the specific intensity is an integral over sources from many angles at depth. The latter effect can only be captured by multi-angle transport. We then compute the phase relationship between dipolar oscillations in the shock radius and in matter and radiation quantities throughout the post-shock region. We demonstrate a connection between variations in neutrino flux and the hydrodynamical shock oscillations, and use a variant of the Rayleigh test to estimate the detectability of these neutrino fluctuations in IceCube and Super-Kamiokande. Neglecting flavor oscillations, fluctuations in our nonrotating model would be detectable to ~10 kpc in IceCube, and a detailed power spectrum could be measured out to ~5 kpc. These distances are considerably lower in our rapidly rotating model or with significant flavor oscillations. Finally, we measure the impact of rapid rotation on detectable neutrino signals. Our rapidly rotating model has strong, species-dependent asymmetries in both its peak neutrino flux and its light curves. The peak flux and decline rate show pole-equator ratios of up to ~3 and ~2, respectively.

  19. Microsecond Rearrangements of Hydrophobic Clusters in an Initially Collapsed Globule Prime Structure Formation during the Folding of a Small Protein.

    PubMed

    Goluguri, Rama Reddy; Udgaonkar, Jayant B

    2016-07-31

    Determining how polypeptide chain collapse initiates structure formation during protein folding is a long standing goal. It has been challenging to characterize experimentally the dynamics of the polypeptide chain, which lead to the formation of a compact kinetic molten globule (MG) in about a millisecond. In this study, the sub-millisecond events that occur early during the folding of monellin from the guanidine hydrochloride-unfolded state have been characterized using multiple fluorescence and fluorescence resonance energy transfer probes. The kinetic MG is shown to form in a noncooperative manner from the unfolded (U) state as a result of at least three different processes happening during the first millisecond of folding. Initial chain compaction completes within the first 37μs, and further compaction occurs only after structure formation commences at a few milliseconds of folding. The transient nonnative and native-like hydrophobic clusters with side chains of certain residues buried form during the initial chain collapse and the nonnative clusters quickly disassemble. Subsequently, partial chain desolvation occurs, leading to the formation of a kinetic MG. The initial chain compaction and subsequent chain rearrangement appear to be barrierless processes. The two structural rearrangements within the collapsed globule appear to prime the protein for the actual folding transition. PMID:27370109

  20. Dynamic vapor generator that simulates transient odor emissions of victims entrapped in the voids of collapsed buildings.

    PubMed

    Statheropoulos, M; Pallis, G C; Mikedi, K; Giannoukos, S; Agapiou, A; Pappa, A; Cole, A; Vautz, W; Thomas, C L Paul

    2014-04-15

    The design, development, and validation of a dynamic vapor generator are presented. The generator simulates human scent (odor) emissions from trapped victims in the voids of collapsed buildings. The validation of the device was carried out using a reference detector: a quadrupole mass spectrometer equipped with a pulsed sampling (PS-MS) system. A series of experiments were conducted for evaluating the simulator's performance, defining types and weights of different factors, and proposing further optimization of the device. The developed device enabled the production of stable and transient odor profiles in a controllable and reproducible way (relative standard deviation, RSD < 11%) at ppbv to low ppmv concentrations and allowed emission durations up to 30 min. Moreover, the factors affecting its optimum performance (i.e., evaporation chamber temperature, air flow rate through the mixing chamber, air flow rate through the evaporation chamber, and type of compound) were evaluated through an analysis of variance (ANOVA) tool revealing the next steps toward optimizing the generator. The developed simulator, potentially, can also serve the need for calibrating and evaluating the performance of analytical devices (e.g., gas chromatographers, ion mobility spectrometers, mass spectrometers, sensors, e-noses) in the field. Furthermore, it can contribute in better training of urban search and rescue (USaR) canines.

  1. General-Relativistic Three-Dimensional Multi-group Neutrino Radiation-Hydrodynamics Simulations of Core-Collapse Supernovae

    NASA Astrophysics Data System (ADS)

    Roberts, Luke F.; Ott, Christian D.; Haas, Roland; O’Connor, Evan P.; Diener, Peter; Schnetter, Erik

    2016-11-01

    We report on a set of long-term general-relativistic three-dimensional (3D) multi-group (energy-dependent) neutrino radiation-hydrodynamics simulations of core-collapse supernovae. We employ a full 3D two-moment scheme with the local M1 closure, three neutrino species, and 12 energy groups per species. With this, we follow the post-core-bounce evolution of the core of a nonrotating 27 - {M}ȯ progenitor in full unconstrained 3D and in octant symmetry for ≳380 ms. We find the development of an asymmetric runaway explosion in our unconstrained simulation. We test the resolution dependence of our results and, in agreement with previous work, find that low resolution artificially aids explosion and leads to an earlier runaway expansion of the shock. At low resolution, the octant and full 3D dynamics are qualitatively very similar, but at high resolution, only the full 3D simulation exhibits the onset of explosion.

  2. Micron-scale Reactive Atomistic Simulation of Void Collapse and Hotspot Growth in PETN

    NASA Astrophysics Data System (ADS)

    Thompson, Aidan; Shan, Tzu-Ray

    2014-03-01

    Material defects and heterogeneities such as dislocations, grain boundaries, and micro-porosity play key roles in the shock-induced initiation of detonation in energetic materials. Non-equilibrium molecular dynamics simulations (NEMD) with the ReaxFF force field (ReaxFF) in LAMMPS were performed to explore the effect of nanoscale voids on hotspot growth and initiation in pentaerythritol tetranitrate (PETN) crystals under weak shock conditions. Previously, we have performed reactive NEMD simulations of weak shocks in a (20 nm) 3 PETN crystal containing a spherical void. We observed hotspot formation and an exothermic reaction zone. To observe growth of the hotspot, we have now greatly extended the time and lengthscale of the simulation. We created a cylindrical pore in a 0 . 3 × 0 . 2 × 0 . 001 μm3 crystal. Once the shockwave reached the free surface we continued the simulation using the shock-front absorbing boundary condition. Results show steadily increasing axial and lateral spatial extent of the hotspot and a complex coupling of exothermic chemistry to hotspot growth. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy NNSA under contract DE-AC04-94AL85000.

  3. A new equation of state with light nuclei and their weak interactions in core-collapse supernova simulations

    SciTech Connect

    Furusawa, Shun; Yamada, Shoichi; Nagakura, Hiroki; Sumiyoshi, Kohsuke; Suzuki, Hideyuki

    2014-05-02

    We perform numerical experiments to investigate the influence of inelastic neutrino reactions with light nuclei on the standing accretion shock instability. The time evolutions of shock waves are calculated with a simple light-bulb approximation for the neutrino transport and a multi-nuclei equation of state. The neutrino absorptions and inelastic interactions with deuterons, tritons, helions and alpha particles are taken into account in the hydrodynamical simulations in addition to the ordinary charged-current interactions with nucleons. Axial symmetry is assumed but no equatorial symmetry is imposed. We show that the heating rates of deuterons reach as high as ∼ 10% of those of nucleons around the bottom of the gain region. On the other hands, alpha particles heat the matter near the shock wave, which is important when the shock wave expands and density and temperature of matter become low. It is also found that the models with heating by light nuclei have different evolutions from those without it in non-linear evolution phase. The matter in the gain region has various densities and temperatures and there appear regions that are locally rich in deuterons and alpha particles. These results indicate that the inelastic reactions of light nuclei, especially deuterons, should be incorporated in the simulations of core-collapse supernovae.

  4. A new equation of state with light nuclei and their weak interactions in core-collapse supernova simulations

    NASA Astrophysics Data System (ADS)

    Furusawa, Shun; Nagakura, Hiroki; Sumiyoshi, Kohsuke; Yamada, Shoichi; Suzuki, Hideyuki

    2014-05-01

    We perform numerical experiments to investigate the influence of inelastic neutrino reactions with light nuclei on the standing accretion shock instability. The time evolutions of shock waves are calculated with a simple light-bulb approximation for the neutrino transport and a multi-nuclei equation of state. The neutrino absorptions and inelastic interactions with deuterons, tritons, helions and alpha particles are taken into account in the hydrodynamical simulations in addition to the ordinary charged-current interactions with nucleons. Axial symmetry is assumed but no equatorial symmetry is imposed. We show that the heating rates of deuterons reach as high as ˜ 10% of those of nucleons around the bottom of the gain region. On the other hands, alpha particles heat the matter near the shock wave, which is important when the shock wave expands and density and temperature of matter become low. It is also found that the models with heating by light nuclei have different evolutions from those without it in non-linear evolution phase. The matter in the gain region has various densities and temperatures and there appear regions that are locally rich in deuterons and alpha particles. These results indicate that the inelastic reactions of light nuclei, especially deuterons, should be incorporated in the simulations of core-collapse supernovae.

  5. Centrifuge tests on simulation of the ''cookie cutter'' mechanism of chimney collapse into underground openings: Final report

    SciTech Connect

    Kutter, B.L.; Chang, Ging-Song

    1989-05-01

    The underground testing of nuclear devices causes the formation of large underground cavities which eventually may be filled by rubble and soil falling from the roof of the cavity. The zone of collapsing soil progresses upward toward the ground surface to form a ''chimney.'' The mechanisms of chimney collapse are important to understand for two important reasons. (1) A devastating and sudden propagation of the collapse may result in the formation of a surface crater which may threaten personnel and equipment in the vicinity of the crater. (2) Different collapse patterns are known to occur in the field and some of these collapse patterns are known to be associated with leakage of radioactive wastes to the ground surface. A number of centrifuge tests were conducted by Kutter et al. (1988), to study the collapse of cavities in uniform dry sands. In these materials, the chimney collapse patterns were found to involve continuous, smoothly varying shear strain patterns in the chimney. The pattern of collapse in one of the tests is shown in figure 1. Figure 1a shows the surface crater that formed on the ground surface due to the collapse of a 6 inch diameter cavity buried 18'' beneath the ground surface. This result was obtained by draining fluid out of a 6'' rubber bag while the centrifuge was spinning at 11 g.

  6. Structural transformation in the collapse transition of the single flexible homopolymer model

    NASA Astrophysics Data System (ADS)

    Hu, Wenbing

    1998-09-01

    The structural transformation in the coil-globule transition of a single flexible lattice chain has been investigated using dynamic Monte Carlo simulations. The results based upon ensemble averaging illustrated that for the homopolymers with limited chain length, an intermediate state with a dense-core and molten-shell structure reversibly occurs in the transition region. It was attributed to a special microphase separation behavior in an isolated coil, performing with densifying the dense core and contracting the thin shell. The continuous appearance of the size transition and its tendency to discontinuity at the theta temperature with the chain length approaching infinity were illustrated by the coexistence curves of the monomers with limited chain length. A possible explanation and its implications to the general mechanism of protein folding are also discussed.

  7. The Development of Explosions in Axisymmetric Ab Initio Core-collapse Supernova Simulations of 12-25 M Stars

    NASA Astrophysics Data System (ADS)

    Bruenn, Stephen W.; Lentz, Eric J.; Hix, W. Raphael; Mezzacappa, Anthony; Harris, J. Austin; Messer, O. E. Bronson; Endeve, Eirik; Blondin, John M.; Chertkow, Merek Austin; Lingerfelt, Eric J.; Marronetti, Pedro; Yakunin, Konstantin N.

    2016-02-01

    We present four ab initio axisymmetric core-collapse supernova simulations initiated from 12, 15, 20, and 25 {M}⊙ zero-age main sequence progenitors. All of the simulations yield explosions and have been evolved for at least 1.2 s after core bounce and 1 s after material first becomes unbound. These simulations were computed with our Chimera code employing RbR spectral neutrino transport, special and general relativistic transport effects, and state-of-the-art neutrino interactions. Continuing the evolution beyond 1 s after core bounce allows the explosions to develop more fully and the processes involved in powering the explosions to become more clearly evident. We compute explosion energy estimates, including the negative gravitational binding energy of the stellar envelope outside the expanding shock, of 0.34, 0.88, 0.38, and 0.70 Bethe (B ≡ {10}51 erg) and increasing at 0.03, 0.15, 0.19, and 0.52 {\\text{B s}}-1, respectively, for the 12, 15, 20, and 25 {M}⊙ models at the endpoint of this report. We examine the growth of the explosion energy in our models through detailed analyses of the energy sources and flows. We discuss how the explosion energies may be subject to stochastic variations as exemplfied by the effect of the explosion geometry of the 20 {M}⊙ model in reducing its explosion energy. We compute the proto-neutron star masses and kick velocities. We compare our results for the explosion energies and ejected {}56{Ni} masses against some observational standards despite the large error bars in both models and observations.

  8. The development of explosions in axisymmetric ab initio core-collapse supernova simulations of 12–25 M⊙ stars

    DOE PAGES

    Bruenn, Stephen W.; Lentz, Eric J.; Hix, William Raphael; Mezzacappa, Anthony; Harris, James Austin; Messer, O. E. Bronson; Endeve, Eirik; Blondin, John M.; Chertkow, Merek Austin; Lingerfelt, Eric J.; et al

    2016-02-16

    We present four ab initio axisymmetric core-collapse supernova simulations initiated from 12, 15, 20, and 25 M⊙ zero-age main sequence progenitors. All of the simulations yield explosions and have been evolved for at least 1.2 s after core bounce and 1 s after material first becomes unbound. These simulations were computed with our Chimera code employing RbR spectral neutrino transport, special and general relativistic transport effects, and state-of-the-art neutrino interactions. Continuing the evolution beyond 1 s after core bounce allows the explosions to develop more fully and the processes involved in powering the explosions to become more clearly evident. Wemore » compute explosion energy estimates, including the negative gravitational binding energy of the stellar envelope outside the expanding shock, of 0.34, 0.88, 0.38, and 0.70 Bethe (B ≡ 1051 erg) and increasing at 0.03, 0.15, 0.19, and 0.52 BS–1, respectively, for the 12, 15, 20, and 25 M⊙ models at the endpoint of this report. We examine the growth of the explosion energy in our models through detailed analyses of the energy sources and flows. We discuss how the explosion energies may be subject to stochastic variations as exemplfied by the effect of the explosion geometry of the 20 M⊙ model in reducing its explosion energy. We compute the proto-neutron star masses and kick velocities. In conclusion, we compare our results for the explosion energies and ejected 56Ni masses against some observational standards despite the large error bars in both models and observations.« less

  9. Collapsed Lung

    MedlinePlus

    A collapsed lung happens when air enters the pleural space, the area between the lung and the chest wall. If it is a ... is called pneumothorax. If only part of the lung is affected, it is called atelectasis. Causes of ...

  10. Collapse in Thermal Plumes

    NASA Astrophysics Data System (ADS)

    Pears, M. I.; Lithgow-Bertelloni, C. R.; Dobson, D. P.; Davies, R.

    2013-12-01

    Collapsing thermal plumes have been investigated through experimental and numerical simulations. Collapsing plumes are an uncommon fluid dynamical phenomenon, usually seen when the buoyancy source is turned off. A series of fluid dynamical experiments were conducted on thermal plumes at a variety of temperature and viscosity contrasts, in a 26.5 cm^3 cubic tank heated by a constant temperature heater 2 cm in diameter and no-slip bottom and top surfaces. Working fluids included Lyle's Golden Syrup and ADM's Liquidose 436 syrup, which have strongly-temperature dependent viscosity and high Pr number (10^3-10^7 at experimental conditions). Visualisation included white light shadowgraphs and PIV of the central plane. Temperature contrasts ranged from 3-60°C, and two differing forms of collapse were identified. At very low temperature differences 'no rise' collapse was discovered, where the plumes stagnate in the lower third of the tank before collapsing. At temperature differences between 10-23°C normal evolution occurred until 'lens shape' collapse developed between midway and two-thirds of the distance from the base. The lens shape originated in the top of the conduit and was present throughout collapse. At temperatures above ΔT=23°C the plumes follow the expected growth and shape and flatten out at the top of the tank. Thermal collapse remains difficult to explain given experimental conditions (continuous heating). Instead it is possible that small density differences arising from crystallization at ambient temperatures changes plume buoyancy-inducing collapse. We show results on the evolution of the refractive index of the syrup through time to ascertain this possibility. Preliminary numerical results using Fluidity will be presented to explore a greater parameter range of viscosity contrasts and tank aspect ratios.

  11. A comparative study of chemical kinetics models for HMX in mesoscale simulations of shock initiation due to void collapse

    NASA Astrophysics Data System (ADS)

    Rai, Nirmal; Schweigert, Igor; Udaykumar, H. S.

    2015-06-01

    The development of chemical kinetics schemes for use in modeling the reactive mechanics of energetic materials such as HMX has been an active area of research. Decomposition, deflagration and detonation models need to predict time to ignition and locations of onset of chemical reaction in energetic materials when used in meso- and macro-scale simulations. Modeling the chemical processes and development of appropriate kinetic law is challenging work because of lack of experimental data. However, significant work has been done in this area. Multistep kinetic models by Tarver and Tran, Henson and Smilowitz have provided plausible chemical kinetic rate laws for HMX. These models vary in the way they model the details of the decomposition process. Hence, a comparative study of different models will provide an understanding of the uncertainties involved in predicting ignition in HMX. In the current work, hot-spot ignition due to void collapse in shock compressed HMX has been analyzed using several reaction rate models, including the Tarver-Tran 4-equation model, the Henson-Smilowitz 7-equation model, and a new rate model that combines the condensed-phase decomposition rates measured by Brill et al and the detailed mechanism of nitramine flame chemistry due to Yetter et al. The chemical models have been incorporated in a massively parallel Eulerian code SCIMITAR3D. The variations in the predicted thresholds due to differences in the rate models will be discussed.

  12. Gravitational waves from gravitational collapse

    SciTech Connect

    Fryer, Christopher L; New, Kimberly C

    2008-01-01

    Gravitational wave emission from stellar collapse has been studied for nearly four decades. Current state-of-the-art numerical investigations of collapse include those that use progenitors with more realistic angular momentum profiles, properly treat microphysics issues, account for general relativity, and examine non-axisymmetric effects in three dimensions. Such simulations predict that gravitational waves from various phenomena associated with gravitational collapse could be detectable with ground-based and space-based interferometric observatories. This review covers the entire range of stellar collapse sources of gravitational waves: from the accretion induced collapse of a white dwarf through the collapse down to neutron stars or black holes of massive stars to the collapse of supermassive stars.

  13. Characterization of the structural collapse undergone by an unstable system of ultrasoft particles

    NASA Astrophysics Data System (ADS)

    Prestipino, Santi; Malescio, Gianpietro

    2016-09-01

    The effective repulsion between macromolecules such as polymer chains or dendrimers is everywhere finite, implying that interaction centers can even coincide. If, in addition, the large-distance attraction is sufficiently strong, then the system is driven unstable. An unstable system lacks a conventional thermodynamics since, in the infinite-size limit, it eventually collapses to a finite-size cluster (for instance, a polymer dispersion undergoes irreversible coagulation when increasing the amount of dissolved salt beyond a certain limit). Using a double-Gaussian (DG) potential for demonstration, we study the phase behavior of a system of ultrasoft particles as a function of the attraction strength η. Above a critical threshold ηc, the DG system is unstable but its collective behavior is far from trivial since two separate regions of the thermodynamic plane can be identified, based on the value taken by the average waiting time for collapse: this is finite and small on one side of the boundary, while presumably infinite in the other region. In order to make sense of this evidence, we consider a stable system of particles interacting through a DG potential augmented with a hard core (stabilized DG, or SDG potential). We provide arguments supporting the view that the boundary line of the unstable DG model is the remnant of the spinodal line of a fluid-fluid phase transition occurring in the SDG model when the hard-core diameter is sent to zero.

  14. Collapsible and Deployable Trusses

    NASA Technical Reports Server (NTRS)

    Nelson, R. A.

    1985-01-01

    Cable-controlled mechanisms allow large structures stored in small spaces. Combination of telescoping struts and pivot points allows very large structure collapsed into very small one. Concept used not only for straight but for tapered or curved ones as well. Structure adaptable to terrestrial uses as portable towers, scaffolds, and bridge beams folded compactly for transportation or storage.

  15. Global force-torque phase diagram for the DNA double helix: structural transitions, triple points and collapsed plectonemes

    PubMed Central

    Marko, John F.; Neukirch, Sébastien

    2014-01-01

    We present a free energy model for structural transitions of the DNA double helix driven by tensile and torsional stress. Our model is coarse grained, and is based on semiflexible polymer descriptions of B-DNA, underwound L-DNA, and highly overwound P-DNA. The statistical-mechanical model of plectonemic supercoiling previously developed for B-DNA is applied to semiflexible polymer models of P and L-DNA, to obtain a model of DNA structural transitions in quantitative accord with experiment. We identify two distinct plectonemic states, one “inflated” by electrostatic repulsion and thermal fluctuations, and the other “collapsed”, with the two double helices inside the supercoils driven to close contact. We find that supercoiled B and L are stable only in inflated form, while supercoiled P is always collapsed. We also predict the behavior and experimental signatures of highly underwound “Q”-DNA, the left-handed analog of P-DNA; as for P, supercoiled Q is always collapsed. Overstretched “S”-DNA and strand-separated “stress-melted” DNA are also included in our model, allowing prediction of a global phase diagram for forces up to 1000 pN and torques between ±60 pN nm, or in terms of linking number density, from σ = −5 to +3. PMID:24483501

  16. Intercomparison of nuclear data library sources, group structures and collapsing spectra for INTOR-EC

    SciTech Connect

    Pelloni, S.; Stepanek, J.

    1983-09-01

    The European Community International Tokamak Reactor (INTOR-EC) was used to investigate the influence of different cross-section libraries on the tritium breeding ratio. Nucleonic analyses were performed using the discreteordinates transport codes ANISN and ONEDANT, and the recently developed Swiss surface-flux code SURCU. Nuclear data considered were from the DLC-37, VITAMIN-C (DLC-41), Los AlamosNJOY and MACKLIB-IV fusion libraries. It is shown that very good agreement (within 0.5%) between the breeding ratios obtained using the VITAMIN-C and Los Alamos libraries could be obtained, whereas the corresponding values calculated using VITAMIN-C and MACKLIB-IV data sets collapsed into 25 neutron and 21 gamma groups differ up to 23%.

  17. Sulci Collapse Pits

    NASA Technical Reports Server (NTRS)

    2004-01-01

    [figure removed for brevity, see original site]

    We will be looking at collapse pits for the next two weeks. Collapse pits on Mars are formed in serveral ways. In volcanic areas, channelized lava flows can form roofs which insulate the flowing lava. These features are termed lava tubes on Earth and are common features in basaltic flows. After the lava has drained, parts of the roof of the tube will collapse under its own weight. These collapse pits will only be as deep as the bottom of the original lava tube. Another type of collapse feature associated with volcanic areas arises when very large eruptions completely evacuate the magma chamber beneath the volcano. The weight of the volcano will cause the entire ediface to subside into the void space below it. Structural features including fractures and graben will form during the subsidence. Many times collapse pits will form within the graben. In addition to volcanic collapse pits, Mars has many collapse pits formed when volatiles (such as subsurface ice) are released from the surface layers. As the volatiles leave, the weight of the surrounding rock causes collapse pits to form.

    These collapse pits are found in an area of 'sulci' ridges east of Olympus Mons. Graben cut the ridges, and one graben hosts the collapse pits. It is likely that these collapse pits are related to volatile release from material that filled the lows at some point after graben formation.

    Image information: VIS instrument. Latitude 18.6, Longitude 234.6 East (125.4 West). 19 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in

  18. Tracheal collapse.

    PubMed

    Hedlund, C S

    1991-06-01

    Tracheal collapse, one form of tracheal obstruction, is classically described as occurring in middle-aged or older toy breed dogs with a history of chronic "goose-honk" cough. Many dogs with tracheal collapse fit this description, but others are young and may wheeze, hack, or have no cough at all. Patients with a history and physical examination compatible with tracheal collapse are definitively diagnosed based on the findings of the following respiratory tract examinations: inspiratory/expiratory radiographs, fluoroscopy, culture and susceptibility, and a thorough endoscopic evaluation. Prosthetic ring tracheoplasty relieves many of the signs of tracheal obstruction but does not cure the disease. Early diagnosis and treatment are expected to give the dog a better quality life. Following prosthetic ring tracheoplasty, most dogs are more active, breathe easier, cough less, and require less medical treatment for respiratory disease.

  19. Formation of a protocluster: A virialized structure from gravoturbulent collapse. II. A two-dimensional analytical model for a rotating and accreting system

    NASA Astrophysics Data System (ADS)

    Lee, Yueh-Ning; Hennebelle, Patrick

    2016-06-01

    Context. Most stars are born in the gaseous protocluster environment where the gas is reprocessed after the global collapse from the diffuse molecular cloud. The knowledge of this intermediate step gives more accurate constraints on star formation characteristics. Aims: We demonstrate that a virialized globally supported structure, in which star formation happens, is formed out of a collapsing molecular cloud, and we derive a mapping from the parent cloud parameters to the protocluster to predict its properties with a view to confront analytical calculations with observations and simulations. Methods: We decomposed the virial theorem into two dimensions to account for the rotation and the flattened geometry. Equilibrium was found by balancing rotation, turbulence, and self-gravity, while turbulence was maintained through accretion driving and it dissipates in one crossing time. We estimated the angular momentum and the accretion rate of the protocluster from the parent cloud properties. Results: The two-dimensional virial model predicts the size and velocity dispersion given the mass of the protocluster and that of the parent cloud. The gaseous protoclusters lie on a sequence of equilibrium with the trend R ~ M0.5 with limited variations, depending on the evolutionary stage, parent cloud, and parameters that are not well known, such as turbulence driving efficiency by accretion and turbulence anisotropy. The model reproduces observations and simulation results successfully. Conclusions: The properties of protoclusters follow universal relations and they can be derived from that of the parent cloud. The gaseous protocluster is an important primary stage of stellar cluster formation, and should be taken into account when studying star formation. Using simple estimates to infer the peak position of the core mass function (CMF) we find a weak dependence on the cluster mass, suggesting that the physical conditions inside protoclusters may contribute to set a CMF, and by

  20. AXISYMMETRIC AB INITIO CORE-COLLAPSE SUPERNOVA SIMULATIONS OF 12-25 M{sub Sun} STARS

    SciTech Connect

    Bruenn, Stephen W.; Yakunin, Konstantin N.; Mezzacappa, Anthony; Hix, W. Raphael; Lingerfelt, Eric J.; Lentz, Eric J.; Messer, O. E. Bronson; Blondin, John M.; Endeve, Eirik; Marronetti, Pedro

    2013-04-10

    We present an overview of four ab initio axisymmetric core-collapse supernova simulations employing detailed spectral neutrino transport computed with our CHIMERA code and initiated from Woosley and Heger progenitors of mass 12, 15, 20, and 25 M{sub Sun }. All four models exhibit shock revival over {approx}200 ms (leading to the possibility of explosion), driven by neutrino energy deposition. Hydrodynamic instabilities that impart substantial asymmetries to the shock aid these revivals, with convection appearing first in the 12 M{sub Sun} model and the standing accretion shock instability appearing first in the 25 M{sub Sun} model. Three of the models have developed pronounced prolate morphologies (the 20 M{sub Sun} model has remained approximately spherical). By 500 ms after bounce the mean shock radii in all four models exceed 3000 km and the diagnostic explosion energies are 0.33, 0.66, 0.65, and 0.70 Bethe (B = 10{sup 51} erg) for the 12, 15, 20, and 25 M{sub Sun} models, respectively, and are increasing. The three least massive of our models are already sufficiently energetic to completely unbind the envelopes of their progenitors (i.e., to explode), as evidenced by our best estimate of their explosion energies, which first become positive at 320, 380, and 440 ms after bounce. By 850 ms the 12 M{sub Sun} diagnostic explosion energy has saturated at 0.38 B, and our estimate for the final kinetic energy of the ejecta is {approx}0.3 B, which is comparable to observations for lower mass progenitors.

  1. Nonradiative collapse

    SciTech Connect

    Bronnikov, K.A.; Kovalchuk, M.A.

    1982-01-01

    An investigation is made of matter-distribution evolution for pressure in general relativity in the presence of an electromagnetic field in the framework of six types of symmetry: spherical, plane, pseudospherical, cylindrical, pseudoplane, and toroidal. For the first three types, the scalar zero-mass field with minimum coupling is also taken into account. The investigation is carried out for exact solutions of field equations obtained under the assumption of nonradiative collapse, meaning the absence of scalar or gravitational radiation of the system during collapse. The results are interpreted in light of the cosmic-censorship hypothesis. 13 references.

  2. Alba Patera Collapse Pits

    NASA Technical Reports Server (NTRS)

    2004-01-01

    [figure removed for brevity, see original site]

    We will be looking at collapse pits for the next two weeks. Collapse pits on Mars are formed in several ways. In volcanic areas, channelized lava flows can form roofs which insulate the flowing lava. These features are termed lava tubes on Earth and are common features in basaltic flows. After the lava has drained, parts of the roof of the tube will collapse under its own weight. These collapse pits will only be as deep as the bottom of the original lava tube. Another type of collapse feature associated with volcanic areas arises when very large eruptions completely evacuate the magma chamber beneath the volcano. The weight of the volcano will cause the entire edifice to subside into the void space below it. Structural features including fractures and graben will form during the subsidence. Many times collapse pits will form within the graben. In addition to volcanic collapse pits, Mars has many collapse pits formed when volatiles (such as subsurface ice) are released from the surface layers. As the volatiles leave, the weight of the surrounding rock causes collapse pits to form.

    This image of the Alba Patera region has both lava tube collapse pits (running generally east/west) and subsidence related collapse within structural grabens.

    Image information: IR instrument. Latitude 26.9, Longitude 256.5 East (103.5 West). 100 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA

  3. Core Formation And Gravothermal Collapse Of Self-interacting Dark Matter Halos: Monte Carlo N-body simulation versus Conducting Fluid Model

    NASA Astrophysics Data System (ADS)

    Koda, Jun; Shapiro, P. R.

    2007-12-01

    Self-interacting dark matter (SIDM) has been proposed to solve the cuspy core problem of dark matter halos in standard CDM. There are two ways to investigate the effect of the 2-body, non-gravitational, elastic collisions of SIDM, Monte-Carlo N-body simulation and a conducting fluid model. The former is a gravitational N-body simulation with a Monte Carlo algorithm for the SIDM scattering that changes the direction of N-body particles randomly according to a given scattering cross section. The latter is a system of fluid conservation equations with a thermal conduction that describes the collisional effect, which was originally invented to describe the gravothermal collapse of globular clusters. Our previous work found a significant disagreement as regards the strength of collisionality required to solve cuspy core problem. However the two methods have not been properly tested against each other. Here, we make direct comparisons between Monte Carlo N-body simulations and analytic and numerical solutions of the conducting fluid (gaseous) model, for various isolated self-interacting dark matter halos. The N-body simulations reproduce the analytical self-similar solution of gravothermal collapse in the fluid model when one free parameter, the coefficient of heat conduction C, is chosen to be 0.75. The gravothermal collapse results of the simulations agrees well with our 1D numerical hydro solutions of the fluid model within 20% for other initial conditions, including Plummer model, Hernquist profile and NFW profile. In conclusion the conducting fluid model is in reasonably good agreement with the Monte Carlo simulations for isolated halos. We will pursue the origin of the reported disagreement between two methods in a cosmological environment by comparing new N-body simulations with fully cosmological initial conditions.

  4. Collapsing Containers.

    ERIC Educational Resources Information Center

    Brown, Justina L.; Battino, Rubin

    1994-01-01

    Describes variations on atmospheric pressure demonstrations and some systematic studies. Demonstrations use steam, generated either externally or internally to the container, to sweep out residual air. Preferred vessels collapsed slowly. Demonstrations use plastic milk jugs set in layers of aluminum foil, pop bottles immersed in 4-L beakers…

  5. Collapsible pistons

    NASA Technical Reports Server (NTRS)

    Teng, R. N. (Inventor)

    1973-01-01

    A piston assembly is described for use in a hypervelocity gun comprising a forward cylindrical section longitudinally spaced from a rearward cylindrical section by an intermediate section. The intermediate section is longitudinally collapsible when subjected to a predetermined force, to allow the distance between the forward and rearward sections to be suddenly reduced.

  6. Lava Tube Collapse Pits

    NASA Technical Reports Server (NTRS)

    2004-01-01

    [figure removed for brevity, see original site]

    We will be looking at collapse pits for the next two weeks. Collapse pits on Mars are formed in several ways. In volcanic areas, channelized lava flows can form roofs which insulate the flowing lava. These features are termed lava tubes on Earth and are common features in basaltic flows. After the lava has drained, parts of the roof of the tube will collapse under its own weight. These collapse pits will only be as deep as the bottom of the original lava tube. Another type of collapse feature associated with volcanic areas arises when very large eruptions completely evacuate the magma chamber beneath the volcano. The weight of the volcano will cause the entire edifice to subside into the void space below it. Structural features including fractures and graben will form during the subsidence. Many times collapse pits will form within the graben. In addition to volcanic collapse pits, Mars has many collapse pits formed when volatiles (such as subsurface ice) are released from the surface layers. As the volatiles leave, the weight of the surrounding rock causes collapse pits to form.

    These collapse pits are found in the southern hemisphere of Mars. They are likely lava tube collapse pits related to flows from Hadriaca Patera.

    Image information: VIS instrument. Latitude -36.8, Longitude 89.6 East (270.4 West). 19 meter/pixel resolution. Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA's Office of Space

  7. Sulci Collapse Pits

    NASA Technical Reports Server (NTRS)

    2004-01-01

    [figure removed for brevity, see original site]

    We will be looking at collapse pits for the next two weeks. Collapse pits on Mars are formed in several ways. In volcanic areas, channelized lava flows can form roofs which insulate the flowing lava. These features are termed lava tubes on Earth and are common features in basaltic flows. After the lava has drained, parts of the roof of the tube will collapse under its own weight. These collapse pits will only be as deep as the bottom of the original lava tube. Another type of collapse feature associated with volcanic areas arises when very large eruptions completely evacuate the magma chamber beneath the volcano. The weight of the volcano will cause the entire edifice to subside into the void space below it. Structural features including fractures and graben will form during the subsidence. Many times collapse pits will form within the graben. In addition to volcanic collapse pits, Mars has many collapse pits formed when volatiles (such as subsurface ice) are released from the surface layers. As the volatiles leave, the weight of the surrounding rock causes collapse pits to form.

    This is the Noctis Labyrinthus region of Mars. These collapse pits are forming along structural fractures that are allowing the release of volatiles from the subsurface. This is believed to be the way that chaos terrain forms on Mars. This area represents the early stage of chaos formation.

    Image information: VIS instrument. Latitude -12.6, Longitude 264 East (96 West). 19 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in

  8. Peer review of the National Transportation Safety Board structural analysis of the I-35W bridge collapse.

    SciTech Connect

    Gwinn, Kenneth West; Redmond, James Michael; Wellman, Gerald William

    2008-10-01

    The Engineering Sciences Center at Sandia National Laboratories provided an independent peer review of the structural analysis supporting the National Transportation Safety Board investigation of the August 1, 2007 collapse of the I-35W Bridge in Minneapolis. The purpose of the review was to provide an impartial critique of the analysis approach, assumptions, solution techniques, and conclusions. Subsequent to reviewing numerous supporting documents, a SNL team of staff and management visited NTSB to participate in analysis briefings, discussions with investigators, and examination of critical elements of the bridge wreckage. This report summarizes the opinion of the review team that the NTSB analysis effort was appropriate and provides compelling supporting evidence for the NTSB probable cause conclusion.

  9. Simulating the Effect on Criticality of Simultaneous Matrix Degradation and Assembly Collapse for the 21 PWR Waste Package

    SciTech Connect

    A.A. Alsaed

    1999-09-23

    The purpose of this calculation is to evaluate the effects of fission products loss on the reactivity of commercial pressurized water reactor (PWR) spent nuclear fuel (SNF) in 21 PWR waste packages (WPs) in the event of simultaneous fuel matrix degradation and assembly collapse.

  10. Ascraeus Mons Collapse Pits

    NASA Technical Reports Server (NTRS)

    2004-01-01

    [figure removed for brevity, see original site]

    We will be looking at collapse pits for the next two weeks. Collapse pits on Mars are formed in several ways. In volcanic areas, channelized lava flows can form roofs which insulate the flowing lava. These features are termed lava tubes on Earth and are common features in basaltic flows. After the lava has drained, parts of the roof of the tube will collapse under its own weight. These collapse pits will only be as deep as the bottom of the original lava tube. Another type of collapse feature associated with volcanic areas arises when very large eruptions completely evacuate the magma chamber beneath the volcano. The weight of the volcano will cause the entire edifice to subside into the void space below it. Structural features including fractures and graben will form during the subsidence. Many times collapse pits will form within the graben. In addition to volcanic collapse pits, Mars has many collapse pits formed when volatiles (such as subsurface ice) are released from the surface layers. As the volatiles leave, the weight of the surrounding rock causes collapse pits to form.

    These collapse pits are found on the flank of Ascraeus Mons. The pits and channels are all related to lava tube formation and emptying.

    Image information: IR instrument. Latitude 8, Longitude 253.9 East (106.1 West). 100 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA's Office of Space Science

  11. Tharsis Collapse Pits

    NASA Technical Reports Server (NTRS)

    2004-01-01

    [figure removed for brevity, see original site]

    We will be looking at collapse pits for the next two weeks. Collapse pits on Mars are formed in several ways. In volcanic areas, channelized lava flows can form roofs which insulate the flowing lava. These features are termed lava tubes on Earth and are common features in basaltic flows. After the lava has drained, parts of the roof of the tube will collapse under its own weight. These collapse pits will only be as deep as the bottom of the original lava tube. Another type of collapse feature associated with volcanic areas arises when very large eruptions completely evacuate the magma chamber beneath the volcano. The weight of the volcano will cause the entire edifice to subside into the void space below it. Structural features including fractures and graben will form during the subsidence. Many times collapse pits will form within the graben. In addition to volcanic collapse pits, Mars has many collapse pits formed when volatiles (such as subsurface ice) are released from the surface layers. As the volatiles leave, the weight of the surrounding rock causes collapse pits to form.

    These collapse pits are found within the extensive lava flows of the Tharsis region. They are related to lava tubes, likely coming from Ascraeus Mons.

    Image information: VIS instrument. Latitude 22.8, Longitude 266.8 East (93.2 West). 19 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA's Office

  12. Alba Patera Collapse Pits

    NASA Technical Reports Server (NTRS)

    2004-01-01

    [figure removed for brevity, see original site]

    We will be looking at collapse pits for the next two weeks. Collapse pits on Mars are formed in several ways. In volcanic areas, channelized lava flows can form roofs which insulate the flowing lava. These features are termed lava tubes on Earth and are common features in basaltic flows. After the lava has drained, parts of the roof of the tube will collapse under its own weight. These collapse pits will only be as deep as the bottom of the original lava tube. Another type of collapse feature associated with volcanic areas arises when very large eruptions completely evacuate the magma chamber beneath the volcano. The weight of the volcano will cause the entire edifice to subside into the void space below it. Structural features including fractures and graben will form during the subsidence. Many times collapse pits will form within the graben. In addition to volcanic collapse pits, Mars has many collapse pits formed when volatiles (such as subsurface ice) are released from the surface layers. As the volatiles leave, the weight of the surrounding rock causes collapse pits to form.

    These collapse pits are found within graben surrounding Alba Patera. Alba Patera is an old volcano that has subsided after it's magma chamber was evacuated.

    Image information: VIS instrument. Latitude 43.1, Longitude 259.4 East (100.6 West). 19 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA

  13. Tractus Catena Collapse Pits

    NASA Technical Reports Server (NTRS)

    2004-01-01

    [figure removed for brevity, see original site]

    We will be looking at collapse pits for the next two weeks. Collapse pits on Mars are formed in several ways. In volcanic areas, channelized lava flows can form roofs which insulate the flowing lava. These features are termed lava tubes on Earth and are common features in basaltic flows. After the lava has drained, parts of the roof of the tube will collapse under its own weight. These collapse pits will only be as deep as the bottom of the original lava tube. Another type of collapse feature associated with volcanic areas arises when very large eruptions completely evacuate the magma chamber beneath the volcano. The weight of the volcano will cause the entire edifice to subside into the void space below it. Structural features including fractures and graben will form during the subsidence. Many times collapse pits will form within the graben. In addition to volcanic collapse pits, Mars has many collapse pits formed when volatiles (such as subsurface ice) are released from the surface layers. As the volatiles leave, the weight of the surrounding rock causes collapse pits to form.

    These collapse pits are found in graben located in Tractus Catena. These features are related to subsidence after magma chamber evacuation of Alba Patera.

    Image information: VIS instrument. Latitude 35.8, Longitude 241.7 East (118.3 West). 19 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA

  14. Numerical simulation of bubble collapse and the transfer of vapor and noncondensable gas through the bubble interface using the ghost fluid method

    NASA Astrophysics Data System (ADS)

    Jinbo, Y.; Kobayashi, K.; Watanabe, M.; Takahira, H.

    2015-12-01

    The ghost fluid method is improved to include heat and mass transfer across the gas- liquid interface during the bubble collapse in a compressible liquid. This transfer is due to both nonequilibrium phase transition at the interface and diffusion of the noncondensable gas across the interface. In the present method, the ghost fluids are defined with the intention of conserving the total mass, momentum, and energy, as well as the mass of each component while considering the heat and mass fluxes across the interface. The gas phase inside the bubble is a mixture of vapor and noncondensable gas, where binary diffusion between the mixture components is taken into account. The gas diffusion in the surrounding liquid is also considered. This method is applied to a simulation of a single spherical bubble collapse with heat and mass transfer across the interface in a compressible liquid. When noncondensable gas is present, it accumulates near the interface due to vapor condensation, thereby preventing further condensation. This results in a weaker bubble collapse than the case without noncondensable gas.

  15. Structure and evolution of collapse sinkholes: Combined interpretation from physico-chemical modelling and geophysical field work

    NASA Astrophysics Data System (ADS)

    Kaufmann, Georg; Romanov, Douchko

    2016-09-01

    In karst rocks (limestone, anhydrite, gypsum, etc.), water flowing through fissures and bedding partings can enlarge voids either by physical or chemical dissolution. Within a geologically short period of time, the increase in void space creates a large secondary porosity typical for soluble rocks, which is responsible for preferential flow through the karst rock, often through cave systems with passages reaching the meter-scale and more. This large-scale voids in the sub-surface can initiate collapse of the overburden, either through wall or roof breakdown, and the initial void created by dissolution can migrate upwards and finally cause a surface collapse and create a collapse sinkhole. While the dissolution part of this evolution is in the order of 10,000-100,000 years, the final mechanical collapse can occur on time scales of days. We have studied a typical collapse sinkhole site in the southern Harz Mountains in Germany, with anhydrite (partly converted to gypsum) as soluble rock in the sub-surface. We discuss geophysical measurements (gravity, electrical resistivity tomography, self potential, magnetics) from the location to identify the local collapse sinkhole signal and the possibility to separate the collapse sinkhole signal from the broader geological signal of the study site. We model the initiation of sub-surface voids with our numerical tool KARSTAQUIFER, a 3D karst evolution model describing flow and dissolution in karst rocks. We apply this numerical model to predict collapse sinkholes in a locality in the Harz Mountains.

  16. Super-resolution microscopy reveals a preformed NEMO lattice structure that is collapsed in incontinentia pigmenti.

    PubMed

    Scholefield, Janine; Henriques, Ricardo; Savulescu, Anca F; Fontan, Elisabeth; Boucharlat, Alix; Laplantine, Emmanuel; Smahi, Asma; Israël, Alain; Agou, Fabrice; Mhlanga, Musa M

    2016-01-01

    The NF-κB pathway has critical roles in cancer, immunity and inflammatory responses. Understanding the mechanism(s) by which mutations in genes involved in the pathway cause disease has provided valuable insight into its regulation, yet many aspects remain unexplained. Several lines of evidence have led to the hypothesis that the regulatory/sensor protein NEMO acts as a biological binary switch. This hypothesis depends on the formation of a higher-order structure, which has yet to be identified using traditional molecular techniques. Here we use super-resolution microscopy to reveal the existence of higher-order NEMO lattice structures dependent on the presence of polyubiquitin chains before NF-κB activation. Such structures may permit proximity-based trans-autophosphorylation, leading to cooperative activation of the signalling cascade. We further show that NF-κB activation results in modification of these structures. Finally, we demonstrate that these structures are abrogated in cells derived from incontinentia pigmenti patients. PMID:27586688

  17. Super-resolution microscopy reveals a preformed NEMO lattice structure that is collapsed in incontinentia pigmenti

    PubMed Central

    Scholefield, Janine; Henriques, Ricardo; Savulescu, Anca F.; Fontan, Elisabeth; Boucharlat, Alix; Laplantine, Emmanuel; Smahi, Asma; Israël, Alain; Agou, Fabrice; Mhlanga, Musa M.

    2016-01-01

    The NF-κB pathway has critical roles in cancer, immunity and inflammatory responses. Understanding the mechanism(s) by which mutations in genes involved in the pathway cause disease has provided valuable insight into its regulation, yet many aspects remain unexplained. Several lines of evidence have led to the hypothesis that the regulatory/sensor protein NEMO acts as a biological binary switch. This hypothesis depends on the formation of a higher-order structure, which has yet to be identified using traditional molecular techniques. Here we use super-resolution microscopy to reveal the existence of higher-order NEMO lattice structures dependent on the presence of polyubiquitin chains before NF-κB activation. Such structures may permit proximity-based trans-autophosphorylation, leading to cooperative activation of the signalling cascade. We further show that NF-κB activation results in modification of these structures. Finally, we demonstrate that these structures are abrogated in cells derived from incontinentia pigmenti patients. PMID:27586688

  18. Molecular dynamics simulations of certain mutant peptide models from staphylococcal nuclease reveal that initial hydrophobic collapse associated with turn propensity drives β-hairpin folding.

    PubMed

    Shukla, Rashmi Tambe; Kumar, Naveen; Sasidhar, Yellamraju U

    2013-08-01

    An important nucleation event during the folding of staphylococcal nuclease involves the formation of a β-hairpin by the sequence (21) DTVKLMYKGQPMTFR(35) . Earlier studies show that the turn sequence 'YKGQP' has an important role in the folding of this β-hairpin. To understand the active or passive nature of the turn sequence 'YKGQP' in the folding of the aforementioned β-hairpin sequence, we studied glycine mutant peptides Ac-(2) DTVKLMYGGQPMTFR(16) -NMe (K9G:15), Ac-(2) DTVKLMYKGGPMTFR(16) -NMe (Q11G:15), Ac-(2) DTVKLMYGGGPMTFR(16) -NMe (K9G/Q11G:15), and Ac-(2) DTVKLMGGGGGMTFR(16) -NMe (penta-G:15) by using molecular dynamics simulations, starting with two different unfolded states, polyproline II and extended conformational forms. Further, 5mer mutant turn peptides Ac-(2) YGGQP(6) -NMe (K3G:5), Ac-(2) YKGGP(6) -NMe (Q5G:5), Ac-(2) YGGGP(6) -NMe (K3G/Q5G:5), and Ac-(2) GGGGG(6) -NMe (penta-G:5) were also studied individually. Our results show that an initial hydrophobic collapse and loop closure occurs in all 15mer mutants, but only K9G:15 mutant forms a stable native-like β-hairpin. In the other 15mer mutants, the hydrophobic collapsed state would not proceed to β-hairpin formation. Of the different simulations performed for the penta-G:15 mutant, in only one simulation a nonnative β-hairpin conformation is sampled with highly flexible loop region ((8) GGGGG(12) ), which has no specific conformational preference as a 5mer. While the sequence 'YGGQP' in the K3G:5 simulation shows relatively higher β-turn propensity, the presence of this sequence in K9G:15 peptide seems to be driving the β-hairpin formation. Thus, these results seem to suggest that for the formation of a stable β-hairpin, the initial hydrophobic collapse is to be assisted by a turn propensity. Initial hydrophobic collapse alone is not sufficient to guide β-hairpin formation.

  19. Opening of the blood-brain barrier tight junction due to shock wave induced bubble collapse: a molecular dynamics simulation study.

    PubMed

    Goliaei, Ardeshir; Adhikari, Upendra; Berkowitz, Max L

    2015-08-19

    Passage of a shock wave across living organisms may produce bubbles in the blood vessels and capillaries. It was suggested that collapse of these bubbles imposed by an impinging shock wave can be responsible for the damage or even destruction of the blood-brain barrier. To check this possibility, we performed molecular dynamics computer simulations on systems that contained a model of tight junction from the blood-brain barrier. In our model, we represent the tight junction by two pairs of interacting proteins, claudin-15. Some of the simulations were done in the absence of a nanobubble, some in its presence. Our simulations show that when no bubble is present in the system, no damage to tight junction is observed when the shock wave propagates across it. In the presence of a nanobubble, even when the impulse of the shock wave is relatively low, the implosion of the bubble causes serious damage to our model tight junction.

  20. Collapse Tubes

    NASA Technical Reports Server (NTRS)

    2006-01-01

    [figure removed for brevity, see original site] Context image for PIA02154 Collapse Tubes

    The discontinuous channels in this image are collapsed lava tubes.

    Image information: VIS instrument. Latitude -19.7N, Longitude 317.5E. 17 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA's Office of Space Science, Washington, D.C. The Thermal Emission Imaging System (THEMIS) was developed by Arizona State University, Tempe, in collaboration with Raytheon Santa Barbara Remote Sensing. The THEMIS investigation is led by Dr. Philip Christensen at Arizona State University. Lockheed Martin Astronautics, Denver, is the prime contractor for the Odyssey project, and developed and built the orbiter. Mission operations are conducted jointly from Lockheed Martin and from JPL, a division of the California Institute of Technology in Pasadena.

  1. Structured building model reduction toward parallel simulation

    SciTech Connect

    Dobbs, Justin R.; Hencey, Brondon M.

    2013-08-26

    Building energy model reduction exchanges accuracy for improved simulation speed by reducing the number of dynamical equations. Parallel computing aims to improve simulation times without loss of accuracy but is poorly utilized by contemporary simulators and is inherently limited by inter-processor communication. This paper bridges these disparate techniques to implement efficient parallel building thermal simulation. We begin with a survey of three structured reduction approaches that compares their performance to a leading unstructured method. We then use structured model reduction to find thermal clusters in the building energy model and allocate processing resources. Experimental results demonstrate faster simulation and low error without any interprocessor communication.

  2. Precise computations of chemotactic collapse using moving mesh methods

    NASA Astrophysics Data System (ADS)

    Budd, C. J.; Carretero-González, R.; Russell, R. D.

    2005-01-01

    We consider the problem of computing blow-up solutions of chemotaxis systems, or the so-called chemotactic collapse. In two spatial dimensions, such solutions can have approximate self-similar behaviour, which can be very challenging to verify in numerical simulations [cf. Betterton and Brenner, Collapsing bacterial cylinders, Phys. Rev. E 64 (2001) 061904]. We analyse a dynamic (scale-invariant) remeshing method which performs spatial mesh movement based upon equidistribution. Using a suitably chosen monitor function, the numerical solution resolves the fine detail in the asymptotic solution structure, such that the computations are seen to be fully consistent with the asymptotic description of the collapse phenomenon given by Herrero and Velázquez [Singularity patterns in a chemotaxis model, Math. Ann. 306 (1996) 583-623]. We believe that the methods we construct are ideally suited to a large number of problems in mathematical biology for which collapse phenomena are expected.

  3. Collapsible Cryogenic Storage Vessel Project

    NASA Technical Reports Server (NTRS)

    Fleming, David C.

    2002-01-01

    Collapsible cryogenic storage vessels may be useful for future space exploration missions by providing long-term storage capability using a lightweight system that can be compactly packaged for launch. Previous development efforts have identified an 'inflatable' concept as most promising. In the inflatable tank concept, the cryogen is contained within a flexible pressure wall comprised of a flexible bladder to contain the cryogen and a fabric reinforcement layer for structural strength. A flexible, high-performance insulation jacket surrounds the vessel. The weight of the tank and the cryogen is supported by rigid support structures. This design concept is developed through physical testing of a scaled pressure wall, and through development of tests for a flexible Layered Composite Insulation (LCI) insulation jacket. A demonstration pressure wall is fabricated using Spectra fabric for reinforcement, and burst tested under noncryogenic conditions. An insulation test specimens is prepared to demonstrate the effectiveness of the insulation when subject to folding effects, and to examine the effect of compression of the insulation under compressive loading to simulate the pressure effect in a nonrigid insulation blanket under the action atmospheric pressure, such as would be seen in application on the surface of Mars. Although pressure testing did not meet the design goals, the concept shows promise for the design. The testing program provides direction for future development of the collapsible cryogenic vessel concept.

  4. Fires in storages of LFO: Analysis of hazard of structural collapse of steel-aluminium containers.

    PubMed

    Rebec, A; Kolšek, J; Plešec, P

    2016-04-01

    Pool fires of light fuel oil (LFO) in above-ground storages with steel-aluminium containers are discussed. A model is developed for assessments of risks of between-tank fire spread. Radiative effects of the flame body are accounted for by a solid flame radiation model. Thermal profiles evolved due to fire in the adjacent tanks and their consequential structural response is pursued in an exact (materially and geometrically non-linear) manner. The model's derivation is demonstrated on the LFO tank storage located near the Port of Koper (Slovenia). In support of the model, data from literature are adopted where appropriate. Analytical expressions are derived correspondingly for calculations of emissive characteristics of LFO pool fires. Additional data are collected from experiments. Fire experiments conducted on 300cm diameter LFO pans and at different wind speeds and high-temperature uniaxial tension tests of the analysed aluminium alloys types 3xxx and 6xxx are presented. The model is of an immediate fire engineering practical value (risk analyses) or can be used for further research purposes (e.g. sensitivity and parametric studies). The latter use is demonstrated in the final part of the paper discussing possible effects of high-temperature creep of 3xxx aluminium. PMID:26802486

  5. Fires in storages of LFO: Analysis of hazard of structural collapse of steel-aluminium containers.

    PubMed

    Rebec, A; Kolšek, J; Plešec, P

    2016-04-01

    Pool fires of light fuel oil (LFO) in above-ground storages with steel-aluminium containers are discussed. A model is developed for assessments of risks of between-tank fire spread. Radiative effects of the flame body are accounted for by a solid flame radiation model. Thermal profiles evolved due to fire in the adjacent tanks and their consequential structural response is pursued in an exact (materially and geometrically non-linear) manner. The model's derivation is demonstrated on the LFO tank storage located near the Port of Koper (Slovenia). In support of the model, data from literature are adopted where appropriate. Analytical expressions are derived correspondingly for calculations of emissive characteristics of LFO pool fires. Additional data are collected from experiments. Fire experiments conducted on 300cm diameter LFO pans and at different wind speeds and high-temperature uniaxial tension tests of the analysed aluminium alloys types 3xxx and 6xxx are presented. The model is of an immediate fire engineering practical value (risk analyses) or can be used for further research purposes (e.g. sensitivity and parametric studies). The latter use is demonstrated in the final part of the paper discussing possible effects of high-temperature creep of 3xxx aluminium.

  6. Hierarchical Gravitational Fragmentation. I. Collapsing Cores within Collapsing Clouds

    NASA Astrophysics Data System (ADS)

    Naranjo-Romero, Raúl; Vázquez-Semadeni, Enrique; Loughnane, Robert M.

    2015-11-01

    We investigate the Hierarchical Gravitational Fragmentation scenario through numerical simulations of the prestellar stages of the collapse of a marginally gravitationally unstable isothermal sphere immersed in a strongly gravitationally unstable, uniform background medium. The core developes a Bonnor-Ebert (BE)-like density profile, while at the time of singularity (the protostar) formation the envelope approaches a singular-isothermal-sphere (SIS)-like r-2 density profile. However, these structures are never hydrostatic. In this case, the central flat region is characterized by an infall speed, while the envelope is characterized by a uniform speed. This implies that the hydrostatic SIS initial condition leading to Shu's classical inside-out solution is not expected to occur, and therefore neither should the inside-out solution. Instead, the solution collapses from the outside-in, naturally explaining the observation of extended infall velocities. The core, defined by the radius at which it merges with the background, has a time-variable mass, and evolves along the locus of the ensemble of observed prestellar cores in a plot of M/MBE versus M, where M is the core's mass and MBE is the critical BE mass, spanning the range from the “stable” to the “unstable” regimes, even though it is collapsing at all times. We conclude that the presence of an unstable background allows a core to evolve dynamically from the time when it first appears, even when it resembles a pressure-confined, stable BE-sphere. The core can be thought of as a ram-pressure confined BE-sphere, with an increasing mass due to the accretion from the unstable background.

  7. HIERARCHICAL GRAVITATIONAL FRAGMENTATION. I. COLLAPSING CORES WITHIN COLLAPSING CLOUDS

    SciTech Connect

    Naranjo-Romero, Raúl; Vázquez-Semadeni, Enrique; Loughnane, Robert M.

    2015-11-20

    We investigate the Hierarchical Gravitational Fragmentation scenario through numerical simulations of the prestellar stages of the collapse of a marginally gravitationally unstable isothermal sphere immersed in a strongly gravitationally unstable, uniform background medium. The core developes a Bonnor–Ebert (BE)-like density profile, while at the time of singularity (the protostar) formation the envelope approaches a singular-isothermal-sphere (SIS)-like r{sup −2} density profile. However, these structures are never hydrostatic. In this case, the central flat region is characterized by an infall speed, while the envelope is characterized by a uniform speed. This implies that the hydrostatic SIS initial condition leading to Shu's classical inside-out solution is not expected to occur, and therefore neither should the inside-out solution. Instead, the solution collapses from the outside-in, naturally explaining the observation of extended infall velocities. The core, defined by the radius at which it merges with the background, has a time-variable mass, and evolves along the locus of the ensemble of observed prestellar cores in a plot of M/M{sub BE} versus M, where M is the core's mass and M{sub BE} is the critical BE mass, spanning the range from the “stable” to the “unstable” regimes, even though it is collapsing at all times. We conclude that the presence of an unstable background allows a core to evolve dynamically from the time when it first appears, even when it resembles a pressure-confined, stable BE-sphere. The core can be thought of as a ram-pressure confined BE-sphere, with an increasing mass due to the accretion from the unstable background.

  8. Towards a formal description of the collapse approach to the inflationary origin of the seeds of cosmic structure

    SciTech Connect

    Diez-Tejedor, Alberto; Sudarsky, Daniel E-mail: sudarsky@nucleares.unam.mx

    2012-07-01

    Inflation plays a central role in our current understanding of the universe. According to the standard viewpoint, the homogeneous and isotropic mode of the inflaton field drove an early phase of nearly exponential expansion of the universe, while the quantum fluctuations (uncertainties) of the other modes gave rise to the seeds of cosmic structure. However, if we accept that the accelerated expansion led the universe into an essentially homogeneous and isotropic space-time, with the state of all the matter fields in their vacuum (except for the zero mode of the inflaton field), we can not escape the conclusion that the state of the universe as a whole would remain always homogeneous and isotropic. It was recently proposed in [A. Perez, H. Sahlmann and D. Sudarsky, {sup O}n the quantum origin of the seeds of cosmic structure{sup ,} Class. Quant. Grav. 23 (2006) 2317–2354] that a collapse (representing physics beyond the established paradigm, and presumably associated with a quantum-gravity effect à la Penrose) of the state function of the inflaton field might be the missing element, and thus would be responsible for the emergence of the primordial inhomogeneities. Here we will discuss a formalism that relies strongly on quantum field theory on curved space-times, and within which we can implement a detailed description of such a process. The picture that emerges clarifies many aspects of the problem, and is conceptually quite transparent. Nonetheless, we will find that the results lead us to argue that the resulting picture is not fully compatible with a purely geometric description of space-time.

  9. Investigation of bubble-bubble interaction effect during the collapse of multi-bubble system

    NASA Astrophysics Data System (ADS)

    Shao, Xueming; Zhang, Lingxin; Wang, Wenfeng

    2014-11-01

    Bubble collapse is not only an important subject among bubble dynamics, but also a key consequence of cavitation. It has been demonstrated that the structural damage is associated with the rapid change in flow fields during bubble collapse. How to model and simulate the behavior of the bubble collapse is now of great interest. In the present study, both theoretical analysis and a direct numerical simulation on the basis of VOF are performed to investigate the collapses of single bubble and bubble cluster. The effect of bubble-bubble interaction on the collapse of multi-bubble system is presented. The work was supported by the National Natural Science Foundation of China (11272284, 11332009).

  10. Cosmological Structure Formation Shocks and Cosmic Rays in Hydrodynamical Simulations

    NASA Astrophysics Data System (ADS)

    Pfrommer, C.; Springel, V.; Enβlin, T. A.; Jubelgas, M.

    Cosmological shock waves during structure formation not only play a decisive role for the thermalization of gas in virializing structures but also for the acceleration of relativistic cosmic rays (CRs) through diffusive shock acceleration. We discuss a novel numerical treatment of the physics of cosmic rays in combination with a formalism for identifying and measuring the shock strength on-the-fly during a smoothed particle hydrodynamics simulation. In our methodology, the non-thermal CR population is treated self-consistently in order to assess its dynamical impact on the thermal gas as well as other implications on cosmological observables. Using this formalism, we study the history of the thermalization process in high-resolution hydrodynamic simulations of the Lambda cold dark matter model. Collapsed cosmological structures are surrounded by shocks with high Mach numbers up to 1000, but they play only a minor role in the energy balance of thermalization. However, this finding has important consequences for our understanding of the spatial distribution of CRs in the large-scale structure. In high resolution simulations of galaxy clusters, we find a low contribution of the averaged CR pressure, due to the small acceleration efficiency of lower Mach numbers of flow shocks inside halos and the softer adiabatic index of CRs. These effects disfavour CRs when a composite of thermal gas and CRs is adiabatically compressed. However, within cool core regions, the CR pressure reaches equipartition with the thermal pressure leading, to a lower effective adiabatic index and thus to an enhanced compressibility of the central intracluster medium. This effect increases the central density and pressure of the cluster, and thus the resulting X-ray emission and the central Sunyaev-Zel'dovich flux decrement. The integrated Sunyaev-Zel'dovich effect, however, is only slightly changed.

  11. Structural Reliability and Monte Carlo Simulation.

    ERIC Educational Resources Information Center

    Laumakis, P. J.; Harlow, G.

    2002-01-01

    Analyzes a simple boom structure and assesses its reliability using elementary engineering mechanics. Demonstrates the power and utility of Monte-Carlo simulation by showing that such a simulation can be implemented more readily with results that compare favorably to the theoretical calculations. (Author/MM)

  12. Analysing Deep Structure in Games and Simulations.

    ERIC Educational Resources Information Center

    Gredler, Margaret Bell

    1990-01-01

    Discussion of the design of games and simulations focuses on the fundamental defining features called deep structure. The two main levels of interaction in games and simulations are described; generalized reinforcers are discussed; types of defective contingencies are explained, including escape or avoidance behaviors; and the concept of negative…

  13. Elements of Regolith Simulant's Cost Structure

    NASA Technical Reports Server (NTRS)

    Rickman, Douglas L.

    2009-01-01

    The cost of lunar regolith simulants is much higher than many users anticipate. After all, it is nothing more than broken rock. This class will discuss the elements which make up the cost structure for simulants. It will also consider which elements can be avoided under certain circumstances and which elements might be altered by the application of additional research and development.

  14. Impact of Gate and Passivation Structures on Current Collapse of AlGaN/GaN High-Electron-Mobility Transistors under Off-State-Bias Stress

    NASA Astrophysics Data System (ADS)

    Tajima, Masafumi; Hashizume, Tamotsu

    2011-06-01

    Using a dual-gate structure, we have investigated the impact of gate-stress position on the current collapse behavior of AlGaN/GaN high-electron-mobility transistors (HEMTs) without surface passivation. When the gate-bias stress under the off state was applied to the additional gate between the main gate and the drain electrode, we observed a marked increase in on-resistance (RON). On the other hand, the off-state stress on the main gate itself caused a decrease in drain saturation current as well as an increase in RON. The calculation of electric field at the AlGaN surface showed that the field peaks existed at the gate edges on both the drain and source sides, probably causing electron charging at the AlGaN surface near both gate-edge areas. These results indicated that the off-state gate stress induces “virtual gates” in the gate edges expanding in both the drain and source directions. The impacts of device structures on the current collapse have been characterized, using Schottky-gate HEMTs with and without surface passivation and metal-oxide-semiconductor (MOS) gate HEMTs. The surface passivation and MOS-gate structure was effective in mitigating current collapse, which was explained in terms of surface state density, electric field strength, and gate leakage current.

  15. Core-collapse Supernovae

    SciTech Connect

    Hix, William Raphael; Lentz, E. J.; Baird, Mark L; Chertkow, Merek A; Lee, Ching-Tsai; Blondin, J. M.; Bruenn, S. W.; Messer, Bronson; Mezzacappa, Anthony

    2013-01-01

    Marking the inevitable death of a massive star, and the birth of a neutron star or black hole, core-collapse supernovae bring together physics at a wide range in spatial scales, from kilometer-sized hydrodynamic motions (growing to gigameter scale) down to femtometer scale nuclear reactions. Carrying 10$^{51}$ ergs of kinetic energy and a rich-mix of newly synthesized atomic nuclei, core-collapse supernovae are the preeminent foundries of the nuclear species which make up ourselves and our solar system. We will discuss our emerging understanding of the convectively unstable, neutrino-driven explosion mechanism, based on increasingly realistic neutrino-radiation hydrodynamic simulations that include progressively better nuclear and particle physics. Recent multi-dimensional models with spectral neutrino transport from several research groups, which slowly develop successful explosions for a range of progenitors, have motivated changes in our understanding of the neutrino reheating mechanism. In a similar fashion, improvements in nuclear physics, most notably explorations of weak interactions on nuclei and the nuclear equation of state, continue to refine our understanding of how supernovae explode. Recent progress on both the macroscopic and microscopic effects that affect core-collapse supernovae are discussed.

  16. Three-dimensional simulations of rapidly rotating core-collapse supernovae: finding a neutrino-powered explosion aided by non-axisymmetric flows

    NASA Astrophysics Data System (ADS)

    Takiwaki, Tomoya; Kotake, Kei; Suwa, Yudai

    2016-09-01

    We report results from a series of three-dimensional (3D) rotational core-collapse simulations for 11.2 and 27 M⊙ stars employing neutrino transport scheme by the isotropic diffusion source approximation. By changing the initial strength of rotation systematically, we find a rotation-assisted explosion for the 27 M⊙ progenitor , which fails in the absence of rotation. The unique feature was not captured in previous two-dimensional (2D) self-consistent rotating models because the growing non-axisymmetric instabilities play a key role. In the rapidly rotating case, strong spiral flows generated by the so-called low T/|W| instability enhance the energy transport from the proto-neutron star (PNS) to the gain region, which makes the shock expansion more energetic. The explosion occurs more strongly in the direction perpendicular to the rotational axis, which is different from previous 2D predictions.

  17. Multicolor Light Curve Simulations of Population III Core-Collapse Supernovae: From Shock Breakout to 56Co Decay

    NASA Astrophysics Data System (ADS)

    Tolstov, Alexey; Nomoto, Ken'ichi; Tominaga, Nozomu; Ishigaki, Miho N.; Blinnikov, Sergey; Suzuki, Tomoharu

    2016-04-01

    The properties of the first generation of stars and their supernova (SN) explosions remain unknown due to the lack of actual observations. Recently, many transient surveys have been conducted and the feasibility of detecting supernovae (SNe) of Pop III stars is growing. In this paper, we study the multicolor light curves for a number of metal-free core-collapse SN models (25-100 {M}⊙ ) to determine the indicators for the detection and identification of first generation SNe. We use mixing-fallback supernova explosion models that explain the observed abundance patterns of metal-poor stars. Numerical calculations of the multicolor light curves are performed using the multigroup radiation hydrodynamic code stella. The calculated light curves of metal-free SNe are compared with non-zero-metallicity models and several observed SNe. We have found that the shock breakout characteristics, the evolution of the photosphere’s velocity, the luminosity, and the duration and color evolution of the plateau, that is, all of the SN phases from shock breakout to 56Co decay, are helpful for estimating the parameters of the SN progenitor: the mass, the radius, the explosion energy, and the metallicity. We conclude that the multicolor light curves could potentially be used to identify first-generation SNe in current (Subaru/HSC) and future transient surveys (LSST, James Webb Space Telescope). They are also suitable for identifying low-metallicity SNe in the nearby universe (PTF, Pan-STARRS, Gaia).

  18. Photonic band gap structure simulator

    DOEpatents

    Chen, Chiping; Shapiro, Michael A.; Smirnova, Evgenya I.; Temkin, Richard J.; Sirigiri, Jagadishwar R.

    2006-10-03

    A system and method for designing photonic band gap structures. The system and method provide a user with the capability to produce a model of a two-dimensional array of conductors corresponding to a unit cell. The model involves a linear equation. Boundary conditions representative of conditions at the boundary of the unit cell are applied to a solution of the Helmholtz equation defined for the unit cell. The linear equation can be approximated by a Hermitian matrix. An eigenvalue of the Helmholtz equation is calculated. One computation approach involves calculating finite differences. The model can include a symmetry element, such as a center of inversion, a rotation axis, and a mirror plane. A graphical user interface is provided for the user's convenience. A display is provided to display to a user the calculated eigenvalue, corresponding to a photonic energy level in the Brilloin zone of the unit cell.

  19. Track-Structure Simulations for Charged Particles

    PubMed Central

    Dingfelder, Michael

    2013-01-01

    Monte-Carlo track-structure simulations provide a detailed and accurate picture of radiation transport of charged particles through condensed matter of biological interest. Liquid water serves as surrogate for soft tissue and is used in most Monte-Carlo track-structure codes. Basic theories of radiation transport and track-structure simulations are discussed and differences to condensed history codes highlighted. Interaction cross sections for electrons, protons, alpha particles, light and heavy ions are required input data for track-structure simulations. Different calculation methods, including the plane-wave Born approximation, the dielectric theory, and semi-empirical approaches are presented using liquid water as a target. Low-energy electron transport and light ion transport are discussed as areas of special interest. PMID:23032889

  20. Structural model uncertainty in stochastic simulation

    SciTech Connect

    McKay, M.D.; Morrison, J.D.

    1997-09-01

    Prediction uncertainty in stochastic simulation models can be described by a hierarchy of components: stochastic variability at the lowest level, input and parameter uncertainty at a higher level, and structural model uncertainty at the top. It is argued that a usual paradigm for analysis of input uncertainty is not suitable for application to structural model uncertainty. An approach more likely to produce an acceptable methodology for analyzing structural model uncertainty is one that uses characteristics specific to the particular family of models.

  1. [Oligoglycine surface structures: molecular dynamics simulation].

    PubMed

    Gus'kova, O A; Khalatur, P G; Khokhlov, A R; Chinarev, A A; Tsygankova, S V; Bovin, N V

    2010-01-01

    The full-atomic molecular dynamics (MD) simulation of adsorption mode for diantennary oligoglycines [H-Gly4-NH(CH2)5]2 onto graphite and mica surface is described. The resulting structure of adsorption layers is analyzed. The peptide second structure motives have been studied by both STRIDE (structural identification) and DSSP (dictionary of secondary structure of proteins) methods. The obtained results confirm the possibility of polyglycine II (PGII) structure formation in diantennary oligoglycine (DAOG) monolayers deposited onto graphite surface, which was earlier estimated based on atomic-force microscopy measurements.

  2. Collapse, environment, and society.

    PubMed

    Butzer, Karl W

    2012-03-01

    Historical collapse of ancient states poses intriguing social-ecological questions, as well as potential applications to global change and contemporary strategies for sustainability. Five Old World case studies are developed to identify interactive inputs, triggers, and feedbacks in devolution. Collapse is multicausal and rarely abrupt. Political simplification undermines traditional structures of authority to favor militarization, whereas disintegration is preconditioned or triggered by acute stress (insecurity, environmental or economic crises, famine), with breakdown accompanied or followed by demographic decline. Undue attention to stressors risks underestimating the intricate interplay of environmental, political, and sociocultural resilience in limiting the damages of collapse or in facilitating reconstruction. The conceptual model emphasizes resilience, as well as the historical roles of leaders, elites, and ideology. However, a historical model cannot simply be applied to contemporary problems of sustainability without adjustment for cumulative information and increasing possibilities for popular participation. Between the 14th and 18th centuries, Western Europe responded to environmental crises by innovation and intensification; such modernization was decentralized, protracted, flexible, and broadly based. Much of the current alarmist literature that claims to draw from historical experience is poorly focused, simplistic, and unhelpful. It fails to appreciate that resilience and readaptation depend on identified options, improved understanding, cultural solidarity, enlightened leadership, and opportunities for participation and fresh ideas.

  3. Collapse, environment, and society

    PubMed Central

    2012-01-01

    Historical collapse of ancient states poses intriguing social-ecological questions, as well as potential applications to global change and contemporary strategies for sustainability. Five Old World case studies are developed to identify interactive inputs, triggers, and feedbacks in devolution. Collapse is multicausal and rarely abrupt. Political simplification undermines traditional structures of authority to favor militarization, whereas disintegration is preconditioned or triggered by acute stress (insecurity, environmental or economic crises, famine), with breakdown accompanied or followed by demographic decline. Undue attention to stressors risks underestimating the intricate interplay of environmental, political, and sociocultural resilience in limiting the damages of collapse or in facilitating reconstruction. The conceptual model emphasizes resilience, as well as the historical roles of leaders, elites, and ideology. However, a historical model cannot simply be applied to contemporary problems of sustainability without adjustment for cumulative information and increasing possibilities for popular participation. Between the 14th and 18th centuries, Western Europe responded to environmental crises by innovation and intensification; such modernization was decentralized, protracted, flexible, and broadly based. Much of the current alarmist literature that claims to draw from historical experience is poorly focused, simplistic, and unhelpful. It fails to appreciate that resilience and readaptation depend on identified options, improved understanding, cultural solidarity, enlightened leadership, and opportunities for participation and fresh ideas. PMID:22371579

  4. Towards numerical simulations of fluid-structure interactions for investigation of obstructive sleep apnea

    NASA Astrophysics Data System (ADS)

    Huang, Chien-Jung; White, Susan M.; Huang, Shao-Ching; Mallya, Sanjay; Eldredge, Jeff D.

    2014-11-01

    Obstructive sleep apnea(OSA) is a medical condition characterized by repetitive partial or complete occlusion of the airway during sleep. The soft tissues in the airway of OSA patients are prone to collapse under the low pressure loads incurred during breathing. The numerical simulation with patient-specific upper airway model can provide assistance for diagnosis and treatment assessment. The eventual goal of this research is the development of numerical tool for air-tissue interactions in the upper airway of patients with OSA. This tool is expected to capture collapse of the airway in respiratory flow conditions, as well as the effects of various treatment protocols. Here, we present our ongoing progress toward this goal. A sharp-interface embedded boundary method is used on Cartesian grids for resolving the air-tissue interface in the complex patient-specific airway geometries. For the structure simulation, a cut-cell FEM is used. Non-linear Green strains are used for properly resolving the large tissue displacements in the soft palate structures. The fluid and structure solvers are strongly coupled. Preliminary results will be shown, including flow simulation inside the 3D rigid upper airway of patients with OSA, and several validation problem for the fluid-structure coupling.

  5. SIGNATURES OF STAR CLUSTER FORMATION BY COLD COLLAPSE

    SciTech Connect

    Kuznetsova, Aleksandra; Hartmann, Lee; Ballesteros-Paredes, Javier

    2015-12-10

    Subvirial gravitational collapse is one mechanism by which star clusters may form. Here we investigate whether this mechanism can be inferred from observations of young clusters. To address this question, we have computed smoothed particle hydrodynamics simulations of the initial formation and evolution of a dynamically young star cluster through cold (subvirial) collapse, starting with an ellipsoidal, turbulently seeded distribution of gas, and forming sink particles representing (proto)stars. While the initial density distributions of the clouds do not have large initial mass concentrations, gravitational focusing due to the global morphology leads to cluster formation. We use the resulting structures to extract observable morphological and kinematic signatures for the case of subvirial collapse. We find that the signatures of the initial conditions can be erased rapidly as the gas and stars collapse, suggesting that kinematic observations need to be made early in cluster formation and/or at larger scales, away from the growing cluster core. Our results emphasize that a dynamically young system is inherently evolving on short timescales, so that it can be highly misleading to use current-epoch conditions to study aspects such as star formation rates as a function of local density. Our simulations serve as a starting point for further studies of collapse including other factors such as magnetic fields and stellar feedback.

  6. Analysis of fluid instabilities in core collapse supernova progenitors by a semi-analytical methodology and by two dimensional radiation-hydrodynamical simulations

    NASA Astrophysics Data System (ADS)

    Raley, Elizabeth

    2004-12-01

    We have performed an analysis of fluid instabilities below the neutrinospheres of the collapsed cores of supernova progenitors using a methodology introduced by Bruenn and Dineva [28, 29, 31]. In an extensive survey we found that the rate of lepton diffusion always exceeds the rate of thermal diffusion and as a result we do not anywhere see the neutron finger instability as described by the Livermore group [16, 17]. A new instability, lepto-entropy fingers, extending from a radius of 10 15 km out to the vicinity of the neutrinosphere, driven by the cross-response functions (i.e. the dependence of lepton transport on entropy perturbations and vice versa) was discovered. This instability has a maximum growth rate of the order of 100 s-1 with a scale of approximately 1/20 the distance of a perturbed fluid element from the core center [18]. This instability has probably already been seen in some multi-dimensional core collapse calculations. To test our results predicting the presence of doubly diffusive instabilities below the neutrinosphere of a proto-supernova, we have performed two dimensional hydrodynamic simulations with radial ray neutrino transport. This entailed rewriting RadHyd, which is the merger of EVH-1 hydrodynamics and MGFLD neutrino transport developed by Bruenn and DiNisco [43], for two dimensions. In particular, hydrodynamic evolution along angular arrays was included, as was MPI message passing capabilities, in order to utilize massively parallel computer platform such as FAU's BOCA4 Beowulf cluster. This work was partially funded by a grant from the DOE Office of Science, Scientific Discovery through Advanced Computing Program.

  7. Collapsible Towers

    NASA Technical Reports Server (NTRS)

    1976-01-01

    NASA needed a means of orbiting a large radio telescope antenna. Astro Research Corporation developed a new structure that was strong, lightweight, folded into a small storage space, and could be erected by rotation. Later they adapted it to commercial use. Today the "Astromast" tower consists of tubular aluminum alloy and stainless steel members that deploy into small three-sided bays, each made rigid by six diagonal cables. All joints are flexible to permit folding and unfolding. Tower packs into container 5% of its height, can be erected without tools and is reusable. Tower has won "Design of the Year" award from Machine Design. Variations include portable emergency bridges and commercial scaffolding.

  8. Hierarchical Simulation of Hot Composite Structures

    NASA Technical Reports Server (NTRS)

    Chamis, C. C.; Murthy, P. L. N.; Singhal, S. N.

    1993-01-01

    Computational procedures are described to simulate the thermal and mechanical behavior of high temperature metal matrix composites (HT-MMC) in the following three broad areas: (1) Behavior of HT-MMC's from micromechanics to laminate via Metal Matrix Composite Analyzer (METCAN), (2) tailoring of HT-MMC behavior for optimum specific performance via Metal Matrix Laminate Tailoring (MMLT), and (3) HT-MMC structural response for hot structural components via High Temperature Composite Analyzer (HITCAN). Representative results from each area are presented to illustrate the effectiveness of computational simulation procedures. The sample case results show that METCAN can be used to simulate material behavior such as strength, stress-strain response, and cyclic life in HTMMC's; MMLT can be used to tailor the fabrication process for optimum performance such as that for in-service load carrying capacity of HT-MMC's; and HITCAN can be used to evaluate static fracture and fatigue life of hot pressurized metal matrix composite rings.

  9. Simulating the formation of cosmic structure.

    PubMed

    Frenk, C S

    2002-06-15

    A timely combination of new theoretical ideas and observational discoveries has brought about significant advances in our understanding of cosmic evolution. Computer simulations have played a key role in these developments by providing the means to interpret astronomical data in the context of physical and cosmological theory. In the current paradigm, our Universe has a flat geometry, is undergoing accelerated expansion and is gravitationally dominated by elementary particles that make up cold dark matter. Within this framework, it is possible to simulate in a computer the emergence of galaxies and other structures from small quantum fluctuations imprinted during an epoch of inflationary expansion shortly after the Big Bang. The simulations must take into account the evolution of the dark matter as well as the gaseous processes involved in the formation of stars and other visible components. Although many unresolved questions remain, a coherent picture for the formation of cosmic structure is now beginning to emerge.

  10. Proline puckering parameters for collagen structure simulations

    SciTech Connect

    Wu, Di

    2015-03-15

    Collagen is made of triple helices rich in proline residues, and hence is influenced by the conformational motions of prolines. Because the backbone motions of prolines are restricted by the helical structures, the only side chain motion—proline puckering—becomes an influential factor that may affect the stability of collagen structures. In molecular simulations, a proper proline puckering population is desired so to yield valid results of the collagen properties. Here we design the proline puckering parameters in order to yield suitable proline puckering populations as demonstrated in the experimental results. We test these parameters in collagen and the proline dipeptide simulations. Compared with the results of the PDB and the quantum calculations, we propose the proline puckering parameters for the selected collagen model simulations.

  11. Simulating the formation of cosmic structure.

    PubMed

    Frenk, C S

    2002-06-15

    A timely combination of new theoretical ideas and observational discoveries has brought about significant advances in our understanding of cosmic evolution. Computer simulations have played a key role in these developments by providing the means to interpret astronomical data in the context of physical and cosmological theory. In the current paradigm, our Universe has a flat geometry, is undergoing accelerated expansion and is gravitationally dominated by elementary particles that make up cold dark matter. Within this framework, it is possible to simulate in a computer the emergence of galaxies and other structures from small quantum fluctuations imprinted during an epoch of inflationary expansion shortly after the Big Bang. The simulations must take into account the evolution of the dark matter as well as the gaseous processes involved in the formation of stars and other visible components. Although many unresolved questions remain, a coherent picture for the formation of cosmic structure is now beginning to emerge. PMID:12804279

  12. Computational Simulation of Composite Structural Fatigue

    NASA Technical Reports Server (NTRS)

    Minnetyan, Levon; Chamis, Christos C. (Technical Monitor)

    2005-01-01

    Progressive damage and fracture of composite structures subjected to monotonically increasing static, tension-tension cyclic, pressurization, and flexural cyclic loading are evaluated via computational simulation. Constituent material properties, stress and strain limits are scaled up to the structure level to evaluate the overall damage and fracture propagation for composites. Damage initiation, growth, accumulation, and propagation to fracture due to monotonically increasing static and cyclic loads are included in the simulations. Results show the number of cycles to failure at different temperatures and the damage progression sequence during different degradation stages. A procedure is outlined for use of computational simulation data in the assessment of damage tolerance, determination of sensitive parameters affecting fracture, and interpretation of results with insight for design decisions.

  13. Computational Simulation of Composite Structural Fatigue

    NASA Technical Reports Server (NTRS)

    Minnetyan, Levon

    2004-01-01

    Progressive damage and fracture of composite structures subjected to monotonically increasing static, tension-tension cyclic, pressurization, and flexural cyclic loading are evaluated via computational simulation. Constituent material properties, stress and strain limits are scaled up to the structure level to evaluate the overall damage and fracture propagation for composites. Damage initiation, growth, accumulation, and propagation to fracture due to monotonically increasing static and cyclic loads are included in the simulations. Results show the number of cycles to failure at different temperatures and the damage progression sequence during different degradation stages. A procedure is outlined for use of computational simulation data in the assessment of damage tolerance, determination of sensitive parameters affecting fracture, and interpretation of results with insight for design decisions.

  14. New developments in the analysis of column-collapse pyroclastic density currents through numerical simulations of multiphase flows

    NASA Astrophysics Data System (ADS)

    Lepore, S.; Scarpati, C.

    2012-06-01

    A granular multiphase model has been used to evaluate the action of differently sized particles on the dynamics of fountains and associated pyroclastic density currents. The model takes into account the overall disequilibrium conditions between a gas phase and several solid phases, each characterized by its own physical properties. The dynamics of the granular flows (fountains and pyroclastic density currents) has been simulated by adopting a Reynolds-averaged Navier-Stokes model for describing the turbulence effects. Numerical simulations have been carried out by using different values for the eruptive column temperature at the vent, solid particle frictional concentration, turbulent kinetic energy, and dissipation. The results obtained provide evidence of the multiphase nature of the model and describe several disequilibrium effects. The low concentration (≤5 × 10-4) zones lie in the upper part of the granular flow, above the fountain, and above the tail and body of pyroclastic density current as thermal plumes. The high concentration zones, on the contrary, lie in the fountain and at the base of the current. Hence, pyroclastic density currents are assimilated to granular flows constituted by a low concentration suspension flowing above a high concentration basal layer (boundary layer), from the proximal regions to the distal ones. Interactions among the solid particles in the boundary layer of the granular flow are controlled by collisions between particles, whereas the dispersal of particles in the suspension is determined by the dragging of the gas phase. The simulations describe well the dynamics of a tractive boundary layer leading to the formation of stratified facies during Strombolian to Plinian eruptions.

  15. Structured Debriefing in Simulation-Based Education.

    PubMed

    Palaganas, Janice C; Fey, Mary; Simon, Robert

    2016-02-01

    Debriefing following a simulation event is a conversational period for reflection and feedback aimed at sustaining or improving future performance. It is considered by many simulation educators to be a critical activity for learning in simulation-based education. Deep learning can be achieved during debriefing and often depends on the facilitation skills of the debriefer as well as the learner's perceptions of a safe and supportive learning environment as created by the debriefer. On the other hand, poorly facilitated debriefings may create adverse learning, generate bad feelings, and may lead to a degradation of clinical performance, self-reflection, or harm to the educator-learner relationship. The use of a structure that recognizes logical and sequential phases during debriefing can assist simulation educators to achieve a deep level of learning. PMID:26909457

  16. Numerical Simulation of Downstream Flooding due to a Flexible-Dam Collapse. The case of "La Esperanza" dam, Hidalgo-México: Implication on Hazard Assessment.

    NASA Astrophysics Data System (ADS)

    Areu Rangel, O. S., Sr.; Mendoza-Sanchez, I.; Bonasia, R.

    2015-12-01

    The risk of flooding of settlements located downstream of a dam is high due to the large number of people living on natural waterways. Risk assessment of flooding could help in projecting containment and protection in case of a dam-break. For projecting containment and protection works, the assessment should take into account velocities, densities and impact pressure of the water on the villages in risk. Therefore, it is appealing to conduct a series of numerical simulations of downstream flooding including velocity and pressure fields, and their temporal and spatial fluctuations. The present work focuses on the real case of "La Esperanza" dam, located in the state of Hidalgo (Mexico). The dam was built 70 years ago and currently two thirds of its capacity is covered with silt, which implies a very high horizontal thrust. The simulation of the flood due to failure of the dam was carried on using the DualSPHysics code, a new implementation of the mesh-free Lagrangian Smoothed Particle Hydrodynamic (SPH) method. For the boundary conditions, a Digital Elevation Model of the potentially affected area was built using satellite images, the actual bathymetry of the dam and cross sections of the channel. In order to evaluate the hazard posed to the villages located downstream of the dam, different collapse scenarios were simulated, with particular focus on the consequences of the temporal variation of rainfall. Preliminary results show acceleration and dynamic pressure values of water in especially selected areas that are subjected to high risk for the elevated number of inhabitant.

  17. Solvent controlled ion association in structured copolymers: Molecular dynamics simulations in dilute solutions

    NASA Astrophysics Data System (ADS)

    Aryal, Dipak; Perahia, Dvora; Grest, Gary S.

    2015-09-01

    Tailoring the nature of individual segments within ion containing block co-polymers is one critical design tool to achieve desired properties. The local structure including the size and distribution of the ionic blocks, as well as the long range correlations, are crucial for their transport ability. Here, we present molecular dynamics simulations on the effects of varying the concentrations of the ionizable groups on the conformations of pentablock ionomer that consist of a center block of ionic sulfonated styrene tethered to polyethylene and terminated by a bulky substituted styrene in dilute solutions. Sulfonation fractions f (0 ≤ f ≤ 0.55), spanning the range from ionomer to polyelectrolytes, were studied. Results for the equilibrium conformation of the chains in water and a 1:1 mixture of cyclohexane and heptane are compared to that in implicit poor solvents with dielectric constants ɛ = 1.0 and 77.73. In water, the pentablock collapses with the sulfonated groups on the outer surface. As f increases, the ionic, center block increasingly segregates from the hydrophobic regions. In the 1:1 mixture of cyclohexane and heptane, the flexible blocks swell, while the center ionic block collapses for f > 0. For f = 0, all blocks swell. In both implicit poor solvents, the pentablock collapses into a nearly spherical shape for all f. The sodium counterions disperse widely throughout the simulation cell for both water and ɛ = 77.73, whereas for ɛ = 1.0 and mixture of cyclohexane and heptane, the counterions largely condense onto the collapsed pentablock.

  18. Stochastic Simulation Tool for Aerospace Structural Analysis

    NASA Technical Reports Server (NTRS)

    Knight, Norman F.; Moore, David F.

    2006-01-01

    Stochastic simulation refers to incorporating the effects of design tolerances and uncertainties into the design analysis model and then determining their influence on the design. A high-level evaluation of one such stochastic simulation tool, the MSC.Robust Design tool by MSC.Software Corporation, has been conducted. This stochastic simulation tool provides structural analysts with a tool to interrogate their structural design based on their mathematical description of the design problem using finite element analysis methods. This tool leverages the analyst's prior investment in finite element model development of a particular design. The original finite element model is treated as the baseline structural analysis model for the stochastic simulations that are to be performed. A Monte Carlo approach is used by MSC.Robust Design to determine the effects of scatter in design input variables on response output parameters. The tool was not designed to provide a probabilistic assessment, but to assist engineers in understanding cause and effect. It is driven by a graphical-user interface and retains the engineer-in-the-loop strategy for design evaluation and improvement. The application problem for the evaluation is chosen to be a two-dimensional shell finite element model of a Space Shuttle wing leading-edge panel under re-entry aerodynamic loading. MSC.Robust Design adds value to the analysis effort by rapidly being able to identify design input variables whose variability causes the most influence in response output parameters.

  19. Simulations of Large Scale Structures in Cosmology

    NASA Astrophysics Data System (ADS)

    Liao, Shihong

    Large-scale structures are powerful probes for cosmology. Due to the long range and non-linear nature of gravity, the formation of cosmological structures is a very complicated problem. The only known viable solution is cosmological N-body simulations. In this thesis, we use cosmological N-body simulations to study structure formation, particularly dark matter haloes' angular momenta and dark matter velocity field. The origin and evolution of angular momenta is an important ingredient for the formation and evolution of haloes and galaxies. We study the time evolution of the empirical angular momentum - mass relation for haloes to offer a more complete picture about its origin, dependences on cosmological models and nonlinear evolutions. We also show that haloes follow a simple universal specific angular momentum profile, which is useful in modelling haloes' angular momenta. The dark matter velocity field will become a powerful cosmological probe in the coming decades. However, theoretical predictions of the velocity field rely on N-body simulations and thus may be affected by numerical artefacts (e.g. finite box size, softening length and initial conditions). We study how such numerical effects affect the predicted pairwise velocities, and we propose a theoretical framework to understand and correct them. Our results will be useful for accurately comparing N-body simulations to observational data of pairwise velocities.

  20. Computational simulation of human upper airway collapse using a pressure-/state-dependent model of genioglossal muscle contraction under laminar flow conditions

    PubMed Central

    Huang, Yaqi; Malhotra, Atul; White, David P.

    2012-01-01

    A three-element, pressure- and state (sleep and wake) -dependent contraction model of the genioglossal muscle was developed based on the microstructure of skeletal muscle and the cross-bridge theory. This model establishes a direct connection between the contractile forces generated in muscle fibers and the measured electromyogram signals during various upper airway conditions. This effectively avoids the difficulty of determining muscle shortening velocity during complex pharyngeal conditions when modeling the muscle’s contractile behaviors. The activation of the genioglossal muscle under different conditions was then simulated. A sensitivity analysis was performed to determine the effects of varying each modeled parameter on the muscle’s contractile behaviors. This muscle contraction model was then incorporated into our anatomically correct, two-dimensional computational model of the pharyngeal airway to perform a finite-element analysis of air flow, tissue deformation, and airway collapse. The model-predicted muscle deformations are consistent with previous observations regarding upper airway behavior in normal subjects. PMID:15831800

  1. Collapse Pits in Bernard Crater

    NASA Technical Reports Server (NTRS)

    2004-01-01

    [figure removed for brevity, see original site]

    We will be looking at collapse pits for the next two weeks. Collapse pits on Mars are formed in serveral ways. In volcanic areas, channelized lava flows can form roofs which insulate the flowing lava. These features are termed lava tubes on Earth and are common features in basaltic flows. After the lava has drained, parts of the roof of the tube will collapse under its own weight. These collapse pits will only be as deep as the bottom of the original lava tube. Another type of collapse feature associated with volcanic areas arises when very large eruptions completely evacuate the magma chamber beneath the volcano. The weight of the volcano will cause the entire ediface to subside into the void space below it. Structural features including fractures and graben will form during the subsidence. Many times collapse pits will form within the graben. In addition to volcanic collapse pits, Mars has many collapse pits formed when volatiles (such as subsurface ice) are released from the surface layers. As the volatiles leave, the weight of the surrounding rock causes collapse pits to form.

    These pits occur in the floor of Bernard Crater. These collapse pits were likely formed by the release of volatiles from the materials deposited in the crater floor.

    Image information: VIS instrument. Latitude -24, Longitude 205.5 East (154.5 West). 19 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission

  2. Gravitational collapse in f(R) theories

    SciTech Connect

    Cembranos, J.A.R.; Cruz-Dombriz, A. de la; Núñez, B. Montes E-mail: alvaro.delacruzdombriz@uct.ac.za

    2012-04-01

    We study the gravitational collapse in modified gravitational theories. In particular, we analyze a general f(R) model with uniformly collapsing cloud of self-gravitating dust particles. This analysis shares analogies with the formation of large-scale structures in the early Universe and with the formation of stars in a molecular cloud experiencing gravitational collapse. In the same way, this investigation can be used as a first approximation to the modification that stellar objects can suffer in these modified theories of gravity. We study concrete examples, and find that the analysis of gravitational collapse is an important tool to constrain models that present late-time cosmological acceleration.

  3. Online Simulation of Radiation Track Structure Project

    NASA Technical Reports Server (NTRS)

    Plante, Ianik

    2015-01-01

    Space radiation comprises protons, helium and high charged and energy (HZE) particles. High-energy particles are a concern for human space flight, because they are no known options for shielding astronauts from them. When these ions interact with matter, they damage molecules and create radiolytic species. The pattern of energy deposition and positions of the radiolytic species, called radiation track structure, is highly dependent on the charge and energy of the ion. The radiolytic species damage biological molecules, which may lead to several long-term health effects such as cancer. Because of the importance of heavy ions, the radiation community is very interested in the interaction of HZE particles with DNA, notably with regards to the track structure. A desktop program named RITRACKS was developed to simulate radiation track structure. The goal of this project is to create a web interface to allow registered internal users to use RITRACKS remotely.

  4. Dramatic changes in the electronic structure upon transition to the collapsed tetragonal phase in CaFe2As2

    SciTech Connect

    Dhaka, R. S.; Jiang, Rui; Ran, S.; Budko, Sergey L.; Canfield, Paul C.; Harmon, Bruce N.; Kaminski, Adam; Tomic, Milan; Valenti, Roser; Lee, Yongbin

    2014-01-31

    We use angle-resolved photoemission spectroscopy and density functional theory calculations to study the electronic structure of CaFe2As2 in the collapsed tetragonal (CT) phase. This unusual phase of iron arsenic high-temperature superconductors was hard to measure as it exists only under pressure. By inducing internal strain, via the postgrowth thermal treatment of single crystals, we were able to stabilize the CT phase at ambient pressure. We find significant differences in the Fermi surface topology and band dispersion data from the more common orthorhombic-antiferromagnetic or tetragonal-paramagnetic phases, consistent with electronic structure calculations. The top of the hole bands sinks below the Fermi level, which destroys the nesting present in parent phases. The absence of nesting in this phase, along with an apparent loss of Fe magnetic moment, are now clearly experimentally correlated with the lack of superconductivity in this phase.

  5. Digital system for structural dynamics simulation

    SciTech Connect

    Krauter, A.I.; Lagace, L.J.; Wojnar, M.K.; Glor, C.

    1982-11-01

    State-of-the-art digital hardware and software for the simulation of complex structural dynamic interactions, such as those which occur in rotating structures (engine systems). System were incorporated in a designed to use an array of processors in which the computation for each physical subelement or functional subsystem would be assigned to a single specific processor in the simulator. These node processors are microprogrammed bit-slice microcomputers which function autonomously and can communicate with each other and a central control minicomputer over parallel digital lines. Inter-processor nearest neighbor communications busses pass the constants which represent physical constraints and boundary conditions. The node processors are connected to the six nearest neighbor node processors to simulate the actual physical interface of real substructures. Computer generated finite element mesh and force models can be developed with the aid of the central control minicomputer. The control computer also oversees the animation of a graphics display system, disk-based mass storage along with the individual processing elements.

  6. Digital system for structural dynamics simulation

    NASA Technical Reports Server (NTRS)

    Krauter, A. I.; Lagace, L. J.; Wojnar, M. K.; Glor, C.

    1982-01-01

    State-of-the-art digital hardware and software for the simulation of complex structural dynamic interactions, such as those which occur in rotating structures (engine systems). System were incorporated in a designed to use an array of processors in which the computation for each physical subelement or functional subsystem would be assigned to a single specific processor in the simulator. These node processors are microprogrammed bit-slice microcomputers which function autonomously and can communicate with each other and a central control minicomputer over parallel digital lines. Inter-processor nearest neighbor communications busses pass the constants which represent physical constraints and boundary conditions. The node processors are connected to the six nearest neighbor node processors to simulate the actual physical interface of real substructures. Computer generated finite element mesh and force models can be developed with the aid of the central control minicomputer. The control computer also oversees the animation of a graphics display system, disk-based mass storage along with the individual processing elements.

  7. Highly reduced current collapse in AlGaN/GaN high-electron-mobility transistors by combined application of oxygen plasma treatment and field plate structures

    NASA Astrophysics Data System (ADS)

    Asubar, Joel T.; Yoshida, Satoshi; Tokuda, Hirokuni; Kuzuhara, Masaaki

    2016-04-01

    We report on the highly reduced current collapse in AlGaN/GaN high-electron-mobility transistors (HEMTs) by combined application of pre-passivation oxygen (O2) plasma treatment and gate field plate (FP) structures schemes. Four different devices were fabricated in this work: (1) conventional HEMT as reference device, (2) field-plated HEMT, (3) O2 plasma-treated HEMT, (4) both field-plated and O2 plasma-treated HEMT. Analysis of dependence of normalized dynamic R on (NDR) on gate pulse on-time (t on) revealed that gate-FP reduces the emission time constant (τ i ) of trapped electrons while O2-plasma treatment decreases the density of traps. For all measurement conditions, the device with both FP and O2 plasma treatment exhibited the least NDR compared to devices with either FP or O2 plasma treatment only, demonstrating for the first time the compatibility of both O2 plasma treatment and FP schemes in mitigating current collapse.

  8. Shape analysis of simulated breast anatomical structures

    NASA Astrophysics Data System (ADS)

    Contijoch, Francisco; Lynch, Jennifer M.; Pokrajac, David D.; Maidment, Andrew D. A.; Bakic, Predrag R.

    2012-03-01

    Recent advances in high-resolution 3D breast imaging, namely, digital breast tomosynthesis and dedicated breast CT, have enabled detailed analysis of the shape and distribution of anatomical structures in the breast. Such analysis is critically important, since the projections of breast anatomical structures make up the parenchymal pattern in clinical images which can mask the existing abnormalities or introduce false alarms; the parenchymal pattern is also correlated with the risk of cancer. As a first step towards the shape analysis of anatomical structures in the breast, we have analyzed an anthropomorphic software breast phantom. The phantom generation is based upon the recursive splitting of the phantom volume using octrees, which produces irregularly shaped tissue compartments, qualitatively mimicking the breast anatomy. The shape analysis was performed by fitting ellipsoids to the simulated tissue compartments. The ellipsoidal semi-axes were calculated by matching the moments of inertia of each individual compartment and of an ellipsoid. The distribution of Dice coefficients, measuring volumetric overlap between the compartment and the corresponding ellipsoid, as well as the distribution of aspect ratios, measuring relative orientations of the ellipsoids, were used to characterize various classes of phantoms with qualitatively distinctive appearance. A comparison between input parameters for phantom generation and the properties of fitted ellipsoids indicated the high level of user control in the design of software breast phantoms. The proposed shape analysis could be extended to clinical breast images, and used to inform the selection of simulation parameters for improved realism.

  9. Collapse of Surface Nanobubbles

    NASA Astrophysics Data System (ADS)

    Chan, Chon U.; Chen, Longquan; Arora, Manish; Ohl, Claus-Dieter

    2015-03-01

    Surface attached nanobubbles populate surfaces submerged in water. These nanobubbles have a much larger contact angle and longer lifetime than predicted by classical theory. Moreover, it is difficult to distinguish them from hydrophobic droplets, e.g., polymeric contamination, using standard atomic force microscopy. Here, we report fast dynamics of a three phase contact line moving over surface nanobubbles, polymeric droplets, and hydrophobic particles. The dynamics is distinct: across polymeric droplets the contact line quickly jumps and hydrophobic particles pin the contact line, while surface nanobubbles rapidly shrink once merging with the contact line, suggesting a method to differentiate nanoscopic gaseous, liquid, and solid structures. Although the collapse process of surface nanobubbles occurs within a few milliseconds, we show that it is dominated by microscopic dynamics rather than bulk hydrodynamics.

  10. Caribbean-wide, long-term study of seagrass beds reveals local variations, shifts in community structure and occasional collapse.

    PubMed

    van Tussenbroek, Brigitta I; Cortés, Jorge; Collin, Rachel; Fonseca, Ana C; Gayle, Peter M H; Guzmán, Hector M; Jácome, Gabriel E; Juman, Rahanna; Koltes, Karen H; Oxenford, Hazel A; Rodríguez-Ramirez, Alberto; Samper-Villarreal, Jimena; Smith, Struan R; Tschirky, John J; Weil, Ernesto

    2014-01-01

    The CARICOMP monitoring network gathered standardized data from 52 seagrass sampling stations at 22 sites (mostly Thalassia testudinum-dominated beds in reef systems) across the Wider Caribbean twice a year over the period 1993 to 2007 (and in some cases up to 2012). Wide variations in community total biomass (285 to >2000 g dry m(-2)) and annual foliar productivity of the dominant seagrass T. testudinum (<200 and >2000 g dry m(-2)) were found among sites. Solar-cycle related intra-annual variations in T. testudinum leaf productivity were detected at latitudes > 16°N. Hurricanes had little to no long-term effects on these well-developed seagrass communities, except for 1 station, where the vegetation was lost by burial below ∼1 m sand. At two sites (5 stations), the seagrass beds collapsed due to excessive grazing by turtles or sea-urchins (the latter in combination with human impact and storms). The low-cost methods of this regional-scale monitoring program were sufficient to detect long-term shifts in the communities, and fifteen (43%) out of 35 long-term monitoring stations (at 17 sites) showed trends in seagrass communities consistent with expected changes under environmental deterioration. PMID:24594732

  11. Caribbean-wide, long-term study of seagrass beds reveals local variations, shifts in community structure and occasional collapse.

    PubMed

    van Tussenbroek, Brigitta I; Cortés, Jorge; Collin, Rachel; Fonseca, Ana C; Gayle, Peter M H; Guzmán, Hector M; Jácome, Gabriel E; Juman, Rahanna; Koltes, Karen H; Oxenford, Hazel A; Rodríguez-Ramirez, Alberto; Samper-Villarreal, Jimena; Smith, Struan R; Tschirky, John J; Weil, Ernesto

    2014-01-01

    The CARICOMP monitoring network gathered standardized data from 52 seagrass sampling stations at 22 sites (mostly Thalassia testudinum-dominated beds in reef systems) across the Wider Caribbean twice a year over the period 1993 to 2007 (and in some cases up to 2012). Wide variations in community total biomass (285 to >2000 g dry m(-2)) and annual foliar productivity of the dominant seagrass T. testudinum (<200 and >2000 g dry m(-2)) were found among sites. Solar-cycle related intra-annual variations in T. testudinum leaf productivity were detected at latitudes > 16°N. Hurricanes had little to no long-term effects on these well-developed seagrass communities, except for 1 station, where the vegetation was lost by burial below ∼1 m sand. At two sites (5 stations), the seagrass beds collapsed due to excessive grazing by turtles or sea-urchins (the latter in combination with human impact and storms). The low-cost methods of this regional-scale monitoring program were sufficient to detect long-term shifts in the communities, and fifteen (43%) out of 35 long-term monitoring stations (at 17 sites) showed trends in seagrass communities consistent with expected changes under environmental deterioration.

  12. Caribbean-Wide, Long-Term Study of Seagrass Beds Reveals Local Variations, Shifts in Community Structure and Occasional Collapse

    PubMed Central

    van Tussenbroek, Brigitta I.; Cortés, Jorge; Collin, Rachel; Fonseca, Ana C.; Gayle, Peter M. H.; Guzmán, Hector M.; Jácome, Gabriel E.; Juman, Rahanna; Koltes, Karen H.; Oxenford, Hazel A.; Rodríguez-Ramirez, Alberto; Samper-Villarreal, Jimena; Smith, Struan R.; Tschirky, John J.; Weil, Ernesto

    2014-01-01

    The CARICOMP monitoring network gathered standardized data from 52 seagrass sampling stations at 22 sites (mostly Thalassia testudinum-dominated beds in reef systems) across the Wider Caribbean twice a year over the period 1993 to 2007 (and in some cases up to 2012). Wide variations in community total biomass (285 to >2000 g dry m−2) and annual foliar productivity of the dominant seagrass T. testudinum (<200 and >2000 g dry m−2) were found among sites. Solar-cycle related intra-annual variations in T. testudinum leaf productivity were detected at latitudes > 16°N. Hurricanes had little to no long-term effects on these well-developed seagrass communities, except for 1 station, where the vegetation was lost by burial below ∼1 m sand. At two sites (5 stations), the seagrass beds collapsed due to excessive grazing by turtles or sea-urchins (the latter in combination with human impact and storms). The low-cost methods of this regional-scale monitoring program were sufficient to detect long-term shifts in the communities, and fifteen (43%) out of 35 long-term monitoring stations (at 17 sites) showed trends in seagrass communities consistent with expected changes under environmental deterioration. PMID:24594732

  13. PREFACE: Collapse Calderas Workshop

    NASA Astrophysics Data System (ADS)

    Gottsmann, Jo; Aguirre-Diaz, Gerardo

    2008-10-01

    Caldera-formation is one of the most awe-inspiring and powerful displays of nature's force. Resultant deposits may cover vast areas and significantly alter the immediate topography. Post-collapse activity may include resurgence, unrest, intra-caldera volcanism and potentially the start of a new magmatic cycle, perhaps eventually leading to renewed collapse. Since volcanoes and their eruptions are the surface manifestation of magmatic processes, calderas provide key insights into the generation and evolution of large-volume silicic magma bodies in the Earth's crust. Despite their potentially ferocious nature, calderas play a crucial role in modern society's life. Collapse calderas host essential economic deposits and supply power for many via the exploitation of geothermal reservoirs, and thus receive considerable scientific, economic and industrial attention. Calderas also attract millions of visitors world-wide with their spectacular scenic displays. To build on the outcomes of the 2005 calderas workshop in Tenerife (Spain) and to assess the most recent advances on caldera research, a follow-up meeting was proposed to be held in Mexico in 2008. This abstract volume presents contributions to the 2nd Calderas Workshop held at Hotel Misión La Muralla, Querétaro, Mexico, 19-25 October 2008. The title of the workshop `Reconstructing the evolution of collapse calderas: Magma storage, mobilisation and eruption' set the theme for five days of presentations and discussions, both at the venue as well as during visits to the surrounding calderas of Amealco, Amazcala and Huichapan. The multi-disciplinary workshop was attended by more than 40 scientist from North, Central and South America, Europe, Australia and Asia. Contributions covered five thematic topics: geology, geochemistry/petrology, structural analysis/modelling, geophysics, and hazards. The workshop was generously supported by the International Association of Volcanology and the Chemistry of The Earth's Interior

  14. THE THREE-DIMENSIONAL EVOLUTION TO CORE COLLAPSE OF A MASSIVE STAR

    SciTech Connect

    Couch, Sean M.; Chatzopoulos, Emmanouil; Arnett, W. David; Timmes, F. X.

    2015-07-20

    We present the first three-dimensional (3D) simulation of the final minutes of iron core growth in a massive star, up to and including the point of core gravitational instability and collapse. We capture the development of strong convection driven by violent Si burning in the shell surrounding the iron core. This convective burning builds the iron core to its critical mass and collapse ensues, driven by electron capture and photodisintegration. The non-spherical structure and motion generated by 3D convection is substantial at the point of collapse, with convective speeds of several hundreds of km s{sup −1}. We examine the impact of such physically realistic 3D initial conditions on the core-collapse supernova mechanism using 3D simulations including multispecies neutrino leakage and find that the enhanced post-shock turbulence resulting from 3D progenitor structure aids successful explosions. We conclude that non-spherical progenitor structure should not be ignored, and should have a significant and favorable impact on the likelihood for neutrino-driven explosions. In order to make simulating the 3D collapse of an iron core feasible, we were forced to make approximations to the nuclear network making this effort only a first step toward accurate, self-consistent 3D stellar evolution models of the end states of massive stars.

  15. Surface binding of alamethicin stabilizes its helical structure: molecular dynamics simulations.

    PubMed Central

    Tieleman, D P; Berendsen, H J; Sansom, M S

    1999-01-01

    Alamethicin is an amphipathic alpha-helical peptide that forms ion channels. An early event in channel formation is believed to be the binding of alamethicin to the surface of a lipid bilayer. Molecular dynamics simulations are used to compare the structural and dynamic properties of alamethicin in water and alamethicin bound to the surface of a phosphatidylcholine bilayer. The bilayer surface simulation corresponded to a loosely bound alamethicin molecule that interacted with lipid headgroups but did not penetrate the hydrophobic core of the bilayer. Both simulations started with the peptide molecule in an alpha-helical conformation and lasted 2 ns. In water, the helix started to unfold after approximately 300 ps and by the end of the simulation only the N-terminal region of the peptide remained alpha-helical and the molecule had collapsed into a more compact form. At the surface of the bilayer, loss of helicity was restricted to the C-terminal third of the molecule and the rod-shaped structure of the peptide was retained. In the surface simulation about 10% of the peptide/water H-bonds were replaced by peptide/lipid H-bonds. These simulations suggest that some degree of stabilization of an amphipathic alpha-helix occurs at a bilayer surface even without interactions between hydrophobic side chains and the acyl chain core of the bilayer. PMID:10354443

  16. Simulations of kinetically irreversible protein aggregate structure.

    PubMed Central

    Patro, S Y; Przybycien, T M

    1994-01-01

    We have simulated the structure of kinetically irreversible protein aggregates in two-dimensional space using a lattice-based Monte-Carlo routine. Our model specifically accounts for the intermolecular interactions between hydrophobic and hydrophilic protein surfaces and a polar solvent. The simulations provide information about the aggregate density, the types of inter-monomer contacts and solvent content within the aggregates, the type and extent of solvent exposed perimeter, and the short- and long-range order all as a function of (i) the extent of monomer hydrophobic surface area and its distribution on the model protein surface and (ii) the magnitude of the hydrophobic-hydrophobic contact energy. An increase in the extent of monomer hydrophobic surface area resulted in increased aggregate densities with concomitant decreased system free energies. These effects are accompanied by increases in the number of hydrophobic-hydrophobic contacts and decreases in the solvent-exposed hydrophobic surface area of the aggregates. Grouping monomer hydrophobic surfaces in a single contiguous stretch resulted in lower aggregate densities and lower short range order. More favorable hydrophobic-hydrophobic contact energies produced structures with higher densities but the number of unfavorable protein-protein contacts was also observed to increase; greater configurational entropy produced the opposite effect. Properties predicted by our model are in good qualitative agreement with available experimental observations. Images FIGURE 6 FIGURE 13 PMID:8061184

  17. A monolithic collapse origin for the thin and thick disc structure of the S0 galaxy ESO 243-49

    NASA Astrophysics Data System (ADS)

    Comerón, S.; Salo, H.; Peletier, R. F.; Mentz, J.

    2016-09-01

    ESO 243-49 is a high-mass (circular velocity vc ≈ 200 km s-1), edge-on S0 galaxy in the Abell 2877 cluster at a distance of ~95 Mpc. To elucidate the origin of the thick disc of this S0 galaxy, we use Multi Unit Spectroscopic Explorer (MUSE) science verification data to study its kinematics and stellar populations. The thick disc emits ~80% of the light at heights in excess of 3.5 arcsec (1.6 kpc). The rotation velocities of its stars lag by 30-40 km s-1 compared to those in the thin disc, which is compatible with the asymmetric drift. The thick disc is found to be more metal-poor than the thin disc, but both discs have old ages. We suggest an internal origin for the thick disc stars in high-mass galaxies. We propose that the thick disc formed either a) first in a turbulent phase with a high star formation rate and that a thin disc formed shortly afterwards, or b) because of the dynamical heating of a thin pre-existing component. Either way, the star formation in ESO 243-49 was quenched just a few Gyr after the galaxy was born and the formation of a thin and a thick disc must have occurred before the galaxy stopped forming stars. The formation of the discs was so fast that it could be described as a monolithic collapse where several generations of stars formed in rapid succession. Based on observations made at the European Southern Observatory using the Very Large Telescope under programme 60.A-9328(A).

  18. Multiscale Simulation of Microbe Structure and Dynamics

    PubMed Central

    Joshi, Harshad; Singharoy, Abhishek; Sereda, Yuriy V.; Cheluvaraja, Srinath C.; Ortoleva, Peter J.

    2012-01-01

    A multiscale mathematical and computational approach is developed that captures the hierarchical organization of a microbe. It is found that a natural perspective for understanding a microbe is in terms of a hierarchy of variables at various levels of resolution. This hierarchy starts with the N -atom description and terminates with order parameters characterizing a whole microbe. This conceptual framework is used to guide the analysis of the Liouville equation for the probability density of the positions and momenta of the N atoms constituting the microbe and its environment. Using multiscale mathematical techniques, we derive equations for the co-evolution of the order parameters and the probability density of the N-atom state. This approach yields a rigorous way to transfer information between variables on different space-time scales. It elucidates the interplay between equilibrium and far-from-equilibrium processes underlying microbial behavior. It also provides framework for using coarse-grained nanocharacterization data to guide microbial simulation. It enables a methodical search for free-energy minimizing structures, many of which are typically supported by the set of macromolecules and membranes constituting a given microbe. This suite of capabilities provides a natural framework for arriving at a fundamental understanding of microbial behavior, the analysis of nanocharacterization data, and the computer-aided design of nanostructures for biotechnical and medical purposes. Selected features of the methodology are demonstrated using our multiscale bionanosystem simulator DeductiveMultiscaleSimulator. Systems used to demonstrate the approach are structural transitions in the cowpea chlorotic mosaic virus, RNA of satellite tobacco mosaic virus, virus-like particles related to human papillomavirus, and iron-binding protein lactoferrin. PMID:21802438

  19. Caviton collapse of SRS by SBS

    SciTech Connect

    Aldrich, C.; Bezzerides, B.; DuBois, D.F.; Rose, H.

    1984-01-01

    Particle simulations are performed to show that the ion waves resulting from Stimulated Brillouin Scatter (SBS) can trigger the collapse of the plasma waves excited by Stimulated Raman Scatter (SRS). We discuss the effect of this collapse mechanism on the hot-electron spectrum produced by the electrostatic waves. A fluid model for the coupling of the ion fluctuations to the plasma waves is formulated and we discuss the necessary condition on the SBS to induce collapse of the plasma waves produced by SRS.

  20. Numerical simulation of condensation on structured surfaces.

    PubMed

    Fu, Xiaowu; Yao, Zhaohui; Hao, Pengfei

    2014-11-25

    Condensation of liquid droplets on solid surfaces happens widely in nature and industrial processes. This phase-change phenomenon has great effect on the performance of some microfluidic devices. On the basis of micro- and nanotechnology, superhydrophobic structured surfaces can be well-fabricated. In this work, the nucleating and growth of droplets on different structured surfaces are investigated numerically. The dynamic behavior of droplets during the condensation is simulated by the multiphase lattice Boltzmann method (LBM), which has the ability to incorporate the microscopic interactions, including fluid-fluid interaction and fluid-surface interaction. The results by the LBM show that, besides the chemical properties of surfaces, the topography of structures on solid surfaces influences the condensation process. For superhydrophobic surfaces, the spacing and height of microridges have significant influence on the nucleation sites. This mechanism provides an effective way for prevention of wetting on surfaces in engineering applications. Moreover, it suggests a way to prevent ice formation on surfaces caused by the condensation of subcooled water. For hydrophilic surfaces, however, microstructures may be submerged by the liquid films adhering to the surfaces. In this case, microstructures will fail to control the condensation process. Our research provides an optimized way for designing surfaces for condensation in engineering systems.

  1. Numerical simulation of condensation on structured surfaces.

    PubMed

    Fu, Xiaowu; Yao, Zhaohui; Hao, Pengfei

    2014-11-25

    Condensation of liquid droplets on solid surfaces happens widely in nature and industrial processes. This phase-change phenomenon has great effect on the performance of some microfluidic devices. On the basis of micro- and nanotechnology, superhydrophobic structured surfaces can be well-fabricated. In this work, the nucleating and growth of droplets on different structured surfaces are investigated numerically. The dynamic behavior of droplets during the condensation is simulated by the multiphase lattice Boltzmann method (LBM), which has the ability to incorporate the microscopic interactions, including fluid-fluid interaction and fluid-surface interaction. The results by the LBM show that, besides the chemical properties of surfaces, the topography of structures on solid surfaces influences the condensation process. For superhydrophobic surfaces, the spacing and height of microridges have significant influence on the nucleation sites. This mechanism provides an effective way for prevention of wetting on surfaces in engineering applications. Moreover, it suggests a way to prevent ice formation on surfaces caused by the condensation of subcooled water. For hydrophilic surfaces, however, microstructures may be submerged by the liquid films adhering to the surfaces. In this case, microstructures will fail to control the condensation process. Our research provides an optimized way for designing surfaces for condensation in engineering systems. PMID:25347594

  2. Collapsable seal member

    SciTech Connect

    Sherrell, D.L.

    1983-12-08

    A hollow, collapsable seal member normally disposed in a natural expanded state offering fail-safe pressure sealing against a seating surface and adapted to be evacuated by a vacuum force for collapsing the seal member to disengage the same from said seating surface.

  3. Collapsable seal member

    DOEpatents

    Sherrell, Dennis L.

    1990-01-01

    A hollow, collapsable seal member normally disposed in a natural expanded state offering fail-safe pressure sealing against a seating surface and adapted to be evacuated by a vacuum force for collapsing the seal member to disengage the same from said seating surface.

  4. Critical chemotactic collapse

    NASA Astrophysics Data System (ADS)

    Lushnikov, Pavel M.

    2010-04-01

    A Keller-Segel model describes macroscopic dynamics of bacterial colonies and biological cells as well as dynamics of a gas of self-gravitating Brownian particles. Bacteria secret chemical which attracts other bacteria so that they move towards chemical gradient creating nonlocal attraction between bacteria. If bacterial (or Brownian particle) density exceeds a critical value then the density collapses (blows up) in a finite time which corresponds to bacterial aggregation or gravitational collapse. Collapse in the Keller-Segel model has striking qualitative similarities with a nonlinear Schrödinger equation including critical collapse in two dimensions and supercritical collapse in three dimensions. A self-similar solution near blow up point is studied in the critical two-dimensional case and it has a form of a rescaled steady state solution which contains a critical number of bacteria. Time dependence of scaling of that solution has square root scaling law with logarithmic modification.

  5. Crashworthiness simulation of composite automotive structures

    SciTech Connect

    Botkin, M E; Johnson, N L; Simunovic, S; Zywicz, E

    1998-06-01

    In 1990 the Automotive Composites Consortium (ACC) began the investigation of crash worthiness simulation methods for composite materials. A contract was given to Livermore Software Technology Corporation (LSTC) to implement a new damage model in LS-DYNA3DTM specifically for composite structures. This model is in LS-DYNA3DTM and is in use by the ACC partners. In 1994 USCAR, a partnership of American auto companies, entered into a partnership called SCAAP (Super Computing Automotive Applications Partnership) for the express purpose of working with the National Labs on computational oriented research. A CRADA (Cooperative Research and Development Agreement) was signed with Lawrence Livermore National Laboratory, Oak Ridge National Laboratory, Sandia National Laboratory, Argonne National Laboratory, and Los Alamos National Laboratory to work in three distinctly different technical areas, one of which was composites material modeling for crash worthiness. Each Laboratory was assigned a specific modeling task. The ACC was responsible for the technical direction of the composites project and provided all test data for code verification. All new models were to be implemented in DYNA3D and periodically distributed to all partners for testing. Several new models have been developed and implemented. Excellent agreement has been shown between tube crush simulation and experiments.

  6. Resolving the Formation of Protogalaxies. II.Central Gravitational Collapse

    SciTech Connect

    Wise, John H.; Turk, Matthew J.; Abel, Tom

    2007-10-15

    Numerous cosmological hydrodynamic studies have addressed the formation of galaxies. Here we choose to study the first stages of galaxy formation, including non-equilibrium atomic primordial gas cooling, gravity and hydrodynamics. Using initial conditions appropriate for the concordance cosmological model of structure formation, we perform two adaptive mesh refinement simulations of {approx} 10{sup 8} M{sub {circle_dot}} galaxies at high redshift. The calculations resolve the Jeans length at all times with more than 16 cells and capture over 14 orders of magnitude in length scales. In both cases, the dense, 10{sup 5} solar mass, one parsec central regions are found to contract rapidly and have turbulent Mach numbers up to 4. Despite the ever decreasing Jeans length of the isothermal gas, we only find one site of fragmentation during the collapse. However, rotational secular bar instabilities transport angular momentum outwards in the central parsec as the gas continues to collapse and lead to multiple nested unstable fragments with decreasing masses down to sub-Jupiter mass scales. Although these numerical experiments neglect star formation and feedback, they clearly highlight the physics of turbulence in gravitationally collapsing gas. The angular momentum segregation seen in our calculations plays an important role in theories that form supermassive black holes from gaseous collapse.

  7. Spherical collapse, formation hysteresis and the deeply non-linear cosmological power spectrum

    NASA Astrophysics Data System (ADS)

    Mead, A. J.

    2016-09-01

    I examine differences in non-linear structure formation between cosmological models that share a z = 0 linear power spectrum in both shape and amplitude, but that differ via their growth history. N-body simulations of these models display an approximately identical large-scale-structure skeleton, but reveal deeply non-linear differences in the demographics and properties of haloes. I investigate to what extent the spherical-collapse model can help in understanding these differences, in both real and redshift space. I discuss how this is difficult to do if one attempts to identify haloes directly, because in that case one is subject to the vagaries of halo finding algorithms. However, I demonstrate that the halo model of structure formation provides an accurate non-linear response in the power spectrum, but only if results from spherical collapse that include formation hysteresis are properly incorporated. I comment on how this fact can be used to provide per cent level accurate matter power spectrum predictions for dark energy models for k ≤ 5 hMpc-1 by using the halo model as a correction to accurate ΛCDM simulations. In the appendix I provide some fitting functions for the linear-collapse threshold (δc) and virialized overdensity (Δv) that are valid for a wide range of dark energy models. I also make my spherical-collapse code available at https://github.com/alexander-mead/collapse.

  8. Multiscale Analysis of a Collapsible Respiratory Airway

    NASA Astrophysics Data System (ADS)

    Ghadiali, Samir; Bell, E. David; Swarts, J. Douglas

    2006-11-01

    The Eustachian tube (ET) is a collapsible respiratory airway that connects the nasopharynx with the middle ear (ME). The ET normally exists in a collapsed state and must be periodically opened to maintain a healthy and sterile ME. Although the inability to open the ET (i.e. ET dysfunction) is the primary etiology responsible for several common ME diseases (i.e. Otitis Media), the mechanisms responsible for ET dysfunction are not well established. To investigate these mechanisms, we developed a multi-scale model of airflow in the ET and correlated model results with experimental data obtained in healthy and diseased subjects. The computational models utilized finite-element methods to simulate fluid-structure interactions and molecular dynamics techniques to quantify the adhesive properties of mucus glycoproteins. Results indicate that airflow in the ET is highly sensitive to both the dynamics of muscle contraction and molecular adhesion forces within the ET lumen. In addition, correlation of model results with experimental data obtained in diseased subjects was used to identify the biomechanical mechanisms responsible for ET dysfunction.

  9. Bellechester, Minnesota, USA, lagoon collapses

    NASA Astrophysics Data System (ADS)

    Alexander, E. C.; Broberg, J. S.; Kehren, A. R.; Graziani, M. M.; Turri, W. L.

    1993-12-01

    Bellechester, Minnesota, is a small community of approximately 155 residents located on the county line between Goodhue and Wabasha counties in southeast Minnesota's karst region. Bellechester is served by a 21-year-old wastewater treatment facility (WWTF) consisting of three waste-stabilization ponds. On 28 April 1992 six sinkholes were discovered to have drained cell 2 of the WWTF resulting in the loss of approximately 8.7×106 1 of partially treated effluent and about 600 m3 of soil into previously undetected subsurface voids of unknown dimensions. In the week following the collapse, approximately 200 water wells located within a 5-km radius of the WWTF were sampled in an after-the-fact, emergency sampling program. Twelve samples with elevated fecal coliform levels, 18 samples with nitrate-nitrogen greater than the 10 mg/1 standard, and no samples with elevated chlorides were found. However, the elevated levels could not be unambiguously attributed to the WWTF collapse. This is the third WWTF to fail by sinkhole collapse in southeast Minnesota since 1974. All three collapsed lagoons have been located in similar geomorphic and stratigraphic settings. However, at least two lagoons have collapsed in the adjacent area in northeast Iowa, and these lagoons are located at different stratigraphic positions. Twenty-two WWTFs constructed in southeast Minnesota's karst region in the last 25 years have been identified as subject to potential sinkhole collapse. An unknown but significant number of manure storage lagoons, flood control structures, etc., have also been constructed in the karst region and are at risk. Public agencies are beginning to develop plans to deal with the risk associated with existing and future waste lagoons in this environment. The critical hydrogeologic parameters that can be used to prioritize the risk of collapse at existing facilities include: (1) the lithology of the first bedrock beneath each lagoon, (2) the thickness of surficial materials

  10. Relativistic interpretation of Newtonian simulations for cosmic structure formation

    NASA Astrophysics Data System (ADS)

    Fidler, Christian; Tram, Thomas; Rampf, Cornelius; Crittenden, Robert; Koyama, Kazuya; Wands, David

    2016-09-01

    The standard numerical tools for studying non-linear collapse of matter are Newtonian N-body simulations. Previous work has shown that these simulations are in accordance with General Relativity (GR) up to first order in perturbation theory, provided that the effects from radiation can be neglected. In this paper we show that the present day matter density receives more than 1% corrections from radiation on large scales if Newtonian simulations are initialised before z=50. We provide a relativistic framework in which unmodified Newtonian simulations are compatible with linear GR even in the presence of radiation. Our idea is to use GR perturbation theory to keep track of the evolution of relativistic species and the relativistic space-time consistent with the Newtonian trajectories computed in N-body simulations. If metric potentials are sufficiently small, they can be computed using a first-order Einstein-Boltzmann code such as CLASS. We make this idea rigorous by defining a class of GR gauges, the Newtonian motion gauges, which are defined such that matter particles follow Newtonian trajectories. We construct a simple example of a relativistic space-time within which unmodified Newtonian simulations can be interpreted.

  11. A Structured Debriefing Process for International Business Culture Simulations.

    ERIC Educational Resources Information Center

    McGraw, Peter; Palmer, Ian

    1999-01-01

    Outlines a nine-step structure for debriefing an international business culture simulation. Stresses the need to address three stages in the experiential learning cycle: reflection, processing, and transfer. Appendices include the specific simulation used and a debriefing note. (DB)

  12. Direct collapse to supermassive black hole seeds: comparing the AMR and SPH approaches

    NASA Astrophysics Data System (ADS)

    Luo, Yang; Nagamine, Kentaro; Shlosman, Isaac

    2016-07-01

    We provide detailed comparison between the adaptive mesh refinement (AMR) code ENZO-2.4 and the smoothed particle hydrodynamics (SPH)/N-body code GADGET-3 in the context of isolated or cosmological direct baryonic collapse within dark matter (DM) haloes to form supermassive black holes. Gas flow is examined by following evolution of basic parameters of accretion flows. Both codes show an overall agreement in the general features of the collapse; however, many subtle differences exist. For isolated models, the codes increase their spatial and mass resolutions at different pace, which leads to substantially earlier collapse in SPH than in AMR cases due to higher gravitational resolution in GADGET-3. In cosmological runs, the AMR develops a slightly higher baryonic resolution than SPH during halo growth via cold accretion permeated by mergers. Still, both codes agree in the build-up of DM and baryonic structures. However, with the onset of collapse, this difference in mass and spatial resolution is amplified, so evolution of SPH models begins to lag behind. Such a delay can have effect on formation/destruction rate of H2 due to UV background, and on basic properties of host haloes. Finally, isolated non-cosmological models in spinning haloes, with spin parameter λ ˜ 0.01-0.07, show delayed collapse for greater λ, but pace of this increase is faster for AMR. Within our simulation set-up, GADGET-3 requires significantly larger computational resources than ENZO-2.4 during collapse, and needs similar resources, during the pre-collapse, cosmological structure formation phase. Yet it benefits from substantially higher gravitational force and hydrodynamic resolutions, except at the end of collapse.

  13. Collapse of Surface Nanobubbles

    NASA Astrophysics Data System (ADS)

    Chen, Longquan; Chan, Chon U.; Arora, Manish; Ohl, Claus-Dieter

    2014-11-01

    Surface nanobubbles are nanoscopic gaseous domains that entrap on immersed solid surfaces in water. They are surprisingly stable and are difficult to be distinguished from polymeric/hydrophobic drops and solid particles (contamination). Here, we report a comparative study of contact line motion across surface nanobubbles, polymeric drops and solid particles. We show that surface nanobubbles spontaneously collapse once contact line touches them while a fast jump process and a pinning process are observed on polymeric drops and on solid particles, respectively. These distinct contact line dynamics provide a new approach to identify surface nanobubbles. The collapse of surface nanobubbles demonstrates their gaseous property and also indicates that they are metastable. The collapse process last few milliseconds with a characteristic speed of 0.1 mm/s, which is much longer and slower than that of hydrodynamic phenomena. We further show that the collapse phenomenon can be explained with a microscopic contact line dynamics.

  14. Countdown to Systems Collapse.

    ERIC Educational Resources Information Center

    Tysseling, John C.; Easton, Jeff; Weaks, Julie

    2002-01-01

    Describes how the University of New Mexico Albuquerque developed a strategic business plan for renewing its utility systems when faced with the imminent collapse of its entire energy infrastructure and a $75-100 million price tag for upgrades. (EV)

  15. Cosmogenesis and Collapse

    NASA Astrophysics Data System (ADS)

    Pearle, Philip

    2012-01-01

    Some possible benefits of dynamical collapse for a quantum theory of cosmogenesis are discussed. These are a possible long wait before creation begins, creation of energy and space, and choice of a particular universe out of a superposition.

  16. Collapsed lung (pneumothorax)

    MedlinePlus

    Air around the lung; Air outside the lung; Pneumothorax dropped lung; Spontaneous pneumothorax ... Collapsed lung can be caused by an injury to the lung. Injuries can include a gunshot or knife wound ...

  17. Geometric simulation of structures containing rigid units

    NASA Astrophysics Data System (ADS)

    Wells, Stephen

    2005-03-01

    Much insight into the behaviour of the framework silicates can be obtained from the Rigid Unit model. I review results from geometric analyses [1] of framework structures, quantifying the significance of rigid unit motion in thermal disorder and in defect accomodation, and from a method of simulation [2,3] based on a whole-body `geometric potential' rather than on interatomic potentials. I show the application of the geometric potential to the symmetry-constrained generation of hypothetical zeolite frameworks [4], and to the rapid generation of protein conformations using insights from rigid cluster decomposition [5]. 1. Wells, Dove and Tucker, Journal of Applied Crystallography, 37:536--544 (2004). 2. G.D. Gatta and S.A. Wells, Phys. Chem. Min. 31:1--10 (2004). 3. A. Sartbaeva, S. A. Wells, S. A. T. Redfern, J. Phys.: Condens. Matter 16, 8173 (2004) 4. M. M. J. Treacy, I. Rivin, E. Balkovsky, K. H. Randall and M. D. Foster, Micropor. Mesopor. Mater. 74, 121-132 (2004). 5. M.F. Thorpe, Ming Lei, A.J. Rader, Donald J. Jacobs, and Leslie A. Kuhn, Journal of Molecular Graphics and Modelling 19, 1:60 - 69, (2001).

  18. Simulation Analysis of the Temperature Dependence of Lignin Structure and Dynamics

    SciTech Connect

    Petridis, Loukas; Schulz, Roland; Smith, Jeremy C

    2011-01-01

    Lignins are hydrophobic, branched polymers that regulate water conduction and provide protection against chemical and biological degradation in plant cell walls. Lignins also form a residual barrier to effective hydrolysis of plant biomass pretreated at elevated temperatures in cellulosic ethanol production. Here, the temperature-dependent structure and dynamics of individual softwood lignin polymers in aqueous solution are examined using extensive (17 s) molecular dynamics simulations. With decreasing temperature the lignins are found to transition from mobile, extended to glassy, compact states. The polymers are composed of blobs, inside which the radius of gyration of a polymer segment is a power-law function of the number of monomers comprising it. In the low temperature states the blobs are interpermeable, the polymer does not conform to Zimm/Stockmayer theory, and branching does not lead to reduction of the polymer size, the radius of gyration being instead determined by shape anisotropy. At high temperatures the blobs become spatially separated leading to a fractal crumpled globule form. The low-temperature collapse is thermodynamically driven by the increase of the translational entropy and density fluctuations of water molecules removed from the hydration shell, thus distinguishing lignin collapse from enthalpically driven coil globule polymer transitions and providing a thermodynamic role of hydration water density fluctuations in driving hydrophobic polymer collapse. Although hydrophobic, lignin is wetted, leading to locally enhanced chain dynamics of solvent-exposed monomers. The detailed characterization obtained here provides insight at atomic detail into processes relevant to biomass pretreatment for cellulosic ethanol production and general polymer coil globule transition phenomena.

  19. Simulation analysis of the temperature dependence of lignin structure and dynamics

    SciTech Connect

    Petridis, Loukas; Schulz, Roland; Smith, Jeremy C

    2011-01-01

    Lignins are hydrophobic, branched polymers that regulate water conduction and provide protection against chemical and biological degradation in plant cell walls. Lignins also form a residual barrier to effective hydrolysis of plant biomass pretreated at elevated temperatures in cellulosic ethanol production. Here, the temperature-dependent structure and dynamics of individual softwood lignin polymers in aqueous solution are examined using extensive (17ms) molecular dynamics simulations. With decreasing temperature the lignins are found to transition from mobile, extended to glassy, compact states. The polymers are comprised of blobs, inside which the radius of gyration of a polymer segment is a power-law function of the number of monomers comprising it. In the low temperature states the blobs are inter-permeable, the polymer does not conform to Zimm/Stockmayer theory, and branching does not lead to reduction of the polymer size, the radius of gyration being instead determined by shape anisotropy. At high temperatures the blobs become spatially separated leading to a fractal crumpled globule form. The low-temperature collapse is thermodynamically driven by the increase of the translational entropy and density fluctuations of water molecules removed from the hydration shell , thus distinguishing lignin collapse from enthalpically driven coil-globule polymer transitions and providing a thermodynamic role of hydration water density fluctuations in driving hydrophobic polymer collapse. Although hydrophobic, lignin is wetted, leading to locallyenhanced chain dynamics of solvent-exposed monomers. The detailed characterization obtained here provides insight at atomic detail into processes relevant to biomass pretreatment for cellulosic ethanol production and general polymer coil-globule transition phenomena.

  20. Costa Rica's Chain of laterally collapsed volcanoes.

    NASA Astrophysics Data System (ADS)

    Duarte, E.; Fernandez, E.

    2007-05-01

    From the NW extreme to the SW end of Costa Rica's volcanic backbone, a number of laterally collapsed volcanoes can be observed. Due to several factors, attention has been given to active volcanoes disregarding the importance of collapsed features in terms of assessing volcanic hazards for future generations around inhabited volcanoes. In several cases the typical horseshoe shape amphitheater-like depression can be easily observed. In other cases due to erosion, vegetation, topography, seismic activity or drastic weather such characteristics are not easily recognized. In the order mentioned above appear: Orosi-Cacao, Miravalles, Platanar, Congo, Von Frantzius, Cacho Negro and Turrialba volcanoes. Due to limited studies on these structures it is unknown if sector collapse occurred in one or several phases. Furthermore, in the few studied cases no evidence has been found to relate collapses to actual eruptive episodes. Detailed studies on the deposits and materials composing dome-like shapes will shed light on unsolved questions about petrological and chemical composition. Volume, form and distance traveled by deposits are part of the questions surrounding most of these collapsed volcanoes. Although most of these mentioned structures are extinct, at least Irazú volcano (active volcano) has faced partial lateral collapses recently. It did presented strombolian activity in the early 60s. Collapse scars show on the NW flank show important mass removal in historic and prehistoric times. Moreover, in 1994 a minor hydrothermal explosion provoked the weakening of a deeply altered wall that holds a crater lake (150m diameter, 2.6x106 ). A poster will depict images of the collapsed volcanoes named above with mayor descriptive characteristics. It will also focus on the importance of deeper studies to assess the collapse potential of Irazú volcano with related consequences. Finally, this initiative will invite researchers interested in such topic to join future studies in

  1. Collapsing white dwarfs

    NASA Technical Reports Server (NTRS)

    Baron, E.; Cooperstein, J.; Kahana, S.; Nomoto, K.

    1987-01-01

    The results of the hydrodynamic collapse of an accreting C + O white dwarf are presented. Collapse is induced by electron captures in the iron core behind a conductive deflagration front. The shock wave produced by the hydrodynamic bounce of the iron core stalls at about 115 km, and thus a neutron star formed in such a model would be formed as an optically quiet event.

  2. Toward numerical simulations of fluid-structure interactions for investigation of obstructive sleep apnea

    NASA Astrophysics Data System (ADS)

    Huang, Chien-Jung; Huang, Shao-Ching; White, Susan M.; Mallya, Sanjay M.; Eldredge, Jeff D.

    2016-04-01

    Obstructive sleep apnea (OSA) is a medical condition characterized by repetitive partial or complete occlusion of the airway during sleep. The soft tissues in the airway of OSA patients are prone to collapse under the low-pressure loads incurred during breathing. This paper describes efforts toward the development of a numerical tool for simulation of air-tissue interactions in the upper airway of patients with sleep apnea. A procedure by which patient-specific airway geometries are segmented and processed from dental cone-beam CT scans into signed distance fields is presented. A sharp-interface embedded boundary method based on the signed distance field is used on Cartesian grids for resolving the airflow in the airway geometries. For simulation of structure mechanics with large expected displacements, a cut-cell finite element method with nonlinear Green strains is used. The fluid and structure solvers are strongly coupled with a partitioned iterative algorithm. Preliminary results are shown for flow simulation inside the three-dimensional rigid upper airway of patients with obstructive sleep apnea. Two validation cases for the fluid-structure coupling problem are also presented.

  3. Simulation of the spherically symmetric stellar core collapse, bounce, and postbounce evolution of a star of 13 solar masses with boltzmann neutrino transport, and its implications for the supernova mechanism.

    PubMed

    Mezzacappa, A; Liebendörfer, M; Messer, O E; Hix, W R; Thielemann, F K; Bruenn, S W

    2001-03-01

    With exact three-flavor Boltzmann neutrino transport, we simulate the stellar core collapse, bounce, and postbounce evolution of a 13M star in spherical symmetry, the Newtonian limit, without invoking convection. In the absence of convection, prior spherically symmetric models, which implemented approximations to Boltzmann transport, failed to produce explosions. We consider exact transport to determine if these failures were due to the transport approximations made and to answer remaining fundamental questions in supernova theory. The model presented here is the first in a sequence of models beginning with different progenitors. In this model, a supernova explosion is not obtained.

  4. GRAVITATIONAL COLLAPSE AND FILAMENT FORMATION: COMPARISON WITH THE PIPE NEBULA

    SciTech Connect

    Heitsch, Fabian; Ballesteros-Paredes, Javier; Hartmann, Lee

    2009-10-20

    Recent models of molecular cloud formation and evolution suggest that such clouds are dynamic and generally exhibit gravitational collapse. We present a simple analytic model of global collapse onto a filament and compare this with our numerical simulations of the flow-driven formation of an isolated molecular cloud to illustrate the supersonic motions and infall ram pressures expected in models of gravity-driven cloud evolution. We compare our results with observations of the Pipe Nebula, an especially suitable object for our purposes as its low star formation activity implies insignificant perturbations from stellar feedback. We show that our collapsing cloud model can explain the magnitude of the velocity dispersions seen in the {sup 13}CO filamentary structure by Onishi et al. and the ram pressures required by Lada et al. to confine the lower-mass cores in the Pipe Nebula. We further conjecture that higher-resolution simulations will show small velocity dispersions in the densest core gas, as observed, but which are infall motions and not supporting turbulence. Our results point out the inevitability of ram pressures as boundary conditions for molecular cloud filaments, and the possibility that especially lower-mass cores still can be accreting mass at significant rates, as suggested by observations.

  5. HIGH-RESOLUTION SIMULATION ON STRUCTURE FORMATION WITH EXTREMELY LIGHT BOSONIC DARK MATTER

    SciTech Connect

    Woo, T.-P.; Chiueh Tzihong E-mail: chiuehth@phys.ntu.edu.tw

    2009-05-20

    A bosonic dark matter model is examined in detail via high-resolution simulations. These bosons have particle mass of the order of 10{sup -22} eV and are noninteracting. If they do exist and can account for structure formation, these bosons must be condensed into the Bose-Einstein state and described by a coherent wave function. This matter, also known as fuzzy dark matter, is speculated to be able, first, to eliminate the subgalactic halos to solve the problem of overabundance of dwarf galaxies, and, second, to produce flat halo cores in galaxies suggested by some observations. We investigate this model with simulations up to 1024{sup 3} resolution in a 1 h {sup -1} Mpc box that maintains the background matter density {omega} {sub m} = 0.3 and {omega}{sub {lambda}} = 0.7. Our results show that the extremely light bosonic dark matter can indeed eliminate low-mass halos through the suppression of short-wavelength fluctuations, as predicted by the linear perturbation theory. But in contrast to expectation, our simulations yield singular cores in the collapsed halos, where the halo density profile is similar, but not identical, to the Navarro-Frenk-White profile. Such a profile arises regardless of whether the halo forms through accretion or merger. In addition, the virialized halos exhibit anisotropic turbulence inside a well-defined virial boundary. Much like the velocity dispersion of standard dark matter particles, turbulence is dominated by the random radial flow in most part of the halos and becomes isotropic toward the halo cores. Consequently, the three-dimensional collapsed halo mass distribution can deviate from spherical symmetry, as the cold dark matter halo does.

  6. MAGNETOROTATIONAL CORE-COLLAPSE SUPERNOVAE IN THREE DIMENSIONS

    SciTech Connect

    Mösta, Philipp; Richers, Sherwood; Ott, Christian D.; Haas, Roland; Piro, Anthony L.; Boydstun, Kristen; Abdikamalov, Ernazar; Reisswig, Christian; Schnetter, Erik

    2014-04-20

    We present results of new three-dimensional (3D) general-relativistic magnetohydrodynamic simulations of rapidly rotating strongly magnetized core collapse. These simulations are the first of their kind and include a microphysical finite-temperature equation of state and a leakage scheme that captures the overall energetics and lepton number exchange due to postbounce neutrino emission. Our results show that the 3D dynamics of magnetorotational core-collapse supernovae are fundamentally different from what was anticipated on the basis of previous simulations in axisymmetry (2D). A strong bipolar jet that develops in a simulation constrained to 2D is crippled by a spiral instability and fizzles in full 3D. While multiple (magneto-)hydrodynamic instabilities may be present, our analysis suggests that the jet is disrupted by an m = 1 kink instability of the ultra-strong toroidal field near the rotation axis. Instead of an axially symmetric jet, a completely new, previously unreported flow structure develops. Highly magnetized spiral plasma funnels expelled from the core push out the shock in polar regions, creating wide secularly expanding lobes. We observe no runaway explosion by the end of the full 3D simulation 185 ms after bounce. At this time, the lobes have reached maximum radii of ∼900 km.

  7. Understanding Sodium Channel Function and Modulation Using Atomistic Simulations of Bacterial Channel Structures.

    PubMed

    Boiteux, C; Allen, T W

    2016-01-01

    Sodium channels are chief proteins involved in electrical signaling in the nervous system, enabling critical functions like heartbeat and brain activity. New high-resolution X-ray structures for bacterial sodium channels have created an opportunity to see how these proteins operate at the molecular level. An important challenge to overcome is establishing relationships between the structures and functions of mammalian and bacterial channels. Bacterial sodium channels are known to exhibit the main structural features of their mammalian counterparts, as well as several key functional characteristics, including selective ion conduction, voltage-dependent gating, pore-based inactivation and modulation by local anesthetic, antiarrhythmic and antiepileptic drugs. Simulations have begun to shed light on each of these features in the past few years. Despite deviations in selectivity signatures for bacterial and mammalian channels, simulations have uncovered the nature of the multiion conduction mechanism associated with Na(+) binding to a high-field strength site established by charged glutamate side chains. Simulations demonstrated a surprising level of flexibility of the protein, showing that these side chains are active participants in the permeation process. They have also uncovered changes in protein structure, leading to asymmetrical collapses of the activation gate that have been proposed to correspond to inactivated structures. These observations offer the potential to examine the mechanisms of state-dependent drug activity, focusing on pore-blocking and pore-based slow inactivation in bacterial channels, without the complexities of inactivation on multiple timescales seen in eukaryotic channels. Simulations have provided molecular views of the interactions of drugs, consistent with sites predicted in mammalian channels, as well as a wealth of other sites as potential new drug targets. In this chapter, we survey the new insights into sodium channel function that

  8. Energy localization in nonlinear fiber arrays: Collapse-effect compressor

    SciTech Connect

    Aceves, A.B.; Luther, G.G.; De Angelis, C.; Turitsyn, S.K.

    1995-07-03

    We analyze a collapse mechanism of energy localization in nonlinear fiber arrays. The nonlinear fiber array is suggested as a device to amplify and compress optical pulses. Pulse propagation in one-dimensional fiber arrays has features of collapse (self-focusing) dynamics. Collapse-type compression leads to the localization of all energy initially dispersed in array into a few fibers. Numerical simulations demonstrate the robustness of the suggested compression mechanism.

  9. Bubble-induced cave collapse.

    PubMed

    Girihagama, Lakshika; Nof, Doron; Hancock, Cathrine

    2015-01-01

    Conventional wisdom among cave divers is that submerged caves in aquifers, such as in Florida or the Yucatan, are unstable due to their ever-growing size from limestone dissolution in water. Cave divers occasionally noted partial cave collapses occurring while they were in the cave, attributing this to their unintentional (and frowned upon) physical contact with the cave walls or the aforementioned "natural" instability of the cave. Here, we suggest that these cave collapses do not necessarily result from cave instability or contacts with walls, but rather from divers bubbles rising to the ceiling and reducing the buoyancy acting on isolated ceiling rocks. Using familiar theories for the strength of flat and arched (un-cracked) beams, we first show that the flat ceiling of a submerged limestone cave can have a horizontal expanse of 63 meters. This is much broader than that of most submerged Florida caves (~ 10 m). Similarly, we show that an arched cave roof can have a still larger expanse of 240 meters, again implying that Florida caves are structurally stable. Using familiar bubble dynamics, fluid dynamics of bubble-induced flows, and accustomed diving practices, we show that a group of 1-3 divers submerged below a loosely connected ceiling rock will quickly trigger it to fall causing a "collapse". We then present a set of qualitative laboratory experiments illustrating such a collapse in a circular laboratory cave (i.e., a cave with a circular cross section), with concave and convex ceilings. In these experiments, a metal ball represented the rock (attached to the cave ceiling with a magnet), and the bubbles were produced using a syringe located at the cave floor. PMID:25849088

  10. Oxidation and nitrosylation of cysteines proximal to the intermediate filament (IF)-binding site of plectin: effects on structure and vimentin binding and involvement in IF collapse.

    PubMed

    Spurny, Radovan; Abdoulrahman, Kamaran; Janda, Lubomir; Rünzler, Dominik; Köhler, Gottfried; Castañón, Maria J; Wiche, Gerhard

    2007-03-16

    As an intermediate filament (IF)-based cytolinker protein, plectin plays a key role in the maintenance of cellular cytoarchitecture and serves at the same time as a scaffolding platform for signaling cascades. Consisting of six structural repeats (R1-6) and harboring binding sites for different IF proteins and proteins involved in signaling, the plectin C-terminal domain is of strategic functional importance. Depending on the species, it contains at least 13 cysteines, 4 of which reside in the R5 domain. To investigate the structural and biological functions of R5 cysteines, we used cysteine-to-serine mutagenesis and spectroscopic, biochemical, and functional analyses. Urea-induced unfolding experiments indicated that wild-type R5 in the oxidized, disulfide bond-mediated conformation was more stable than its cysteine-free mutant derivative. The binding affinity of R5 for vimentin was significantly higher, however, when the protein was in the reduced, more relaxed conformation. Of the four R5 cysteines, one (Cys4) was particularly reactive as reflected by its ability to form disulfide bridges with R5 Cys1 and to serve as a target for nitrosylation in vitro. Using immortalized endothelial cell cultures from mice, we show that endogenous plectin is nitrosylated in vivo, and we found that NO donor-induced IF collapse proceeds dramatically faster in plectin-deficient compared with wild-type cells. Our data suggest an antagonistic role of plectin in nitrosylation (oxidative stress)-mediated alterations of IF cytoarchitecture and a possible role of R5 Cys4 as a regulatory switch. PMID:17224453

  11. BLACK HOLE FORMATION IN FAILING CORE-COLLAPSE SUPERNOVAE

    SciTech Connect

    O'Connor, Evan; Ott, Christian D. E-mail: cott@tapir.caltech.edu

    2011-04-01

    We present results of a systematic study of failing core-collapse supernovae and the formation of stellar-mass black holes (BHs). Using our open-source general-relativistic 1.5D code GR1D equipped with a three-species neutrino leakage/heating scheme and over 100 presupernova models, we study the effects of the choice of nuclear equation of state (EOS), zero-age main sequence (ZAMS) mass and metallicity, rotation, and mass-loss prescription on BH formation. We find that the outcome, for a given EOS, can be estimated, to first order, by a single parameter, the compactness of the stellar core at bounce. By comparing protoneutron star (PNS) structure at the onset of gravitational instability with solutions of the Tolman-Oppenheimer-Volkof equations, we find that thermal pressure support in the outer PNS core is responsible for raising the maximum PNS mass by up to 25% above the cold NS value. By artificially increasing neutrino heating, we find the critical neutrino heating efficiency required for exploding a given progenitor structure and connect these findings with ZAMS conditions, establishing, albeit approximately, for the first time based on actual collapse simulations, the mapping between ZAMS parameters and the outcome of core collapse. We also study the effect of progenitor rotation and find that the dimensionless spin of nascent BHs may be robustly limited below a* = Jc/GM{sup 2} = 1 by the appearance of nonaxisymmetric rotational instabilities.

  12. Subsidence and collapse at Texas Salt Domes

    SciTech Connect

    Mullican, W.F.

    1989-01-01

    This book provides a description of the mechanisms and extent of natural and man-induced subsidence and collapse at Texas salt domes. In the Houston diapir province, Frasch mining has caused subsidence bowls and collapse sinkholes at 12 of the 14 sulfur-productive domes. Understanding the structural and hydrologic instability that results at the surface and subsurface is crucial in evaluating the suitability of salt domes as repositories for waste disposal. Part of the Bureau's Coastal Salt Dome Program, this study used aerial photographs, remote-sensing methods, historical and modern topographic maps, and field checks to detect subsidence and collapse associated with natural salt diapiric processes and commercial resource recovery and to determine which processes are likely to reduce the stability and integrity of hydrologic and structural barriers around salt diapirs. Figures and tables illustrating the extent and evolution of subsidence and collapse, along with photographs showing their effects, highlight the text discussion of the salt domes detailed in this study-Boling, Orchard, Moss Bluff, Spindletop, Hoskins Mound, Fannett, Long Point, Nash, High Island, Bryan Mound, Clemens, and Gulf. The author concludes that Frasch sulfur mining from cap rocks causes the most catastrophic subsidence and collapse and that subsidence over salt domes includes processes ranging from trough subsidence to various types of subsurface caving. He concludes that salt domes characterized by subsidence and collapse are unfavorable sites for storage/disposal of hazardous wastes.

  13. Structural Composites Corrosive Management by Computational Simulation

    NASA Technical Reports Server (NTRS)

    Chamis, Christos C.; Minnetyan, Levon

    2006-01-01

    A simulation of corrosive management on polymer composites durability is presented. The corrosive environment is assumed to manage the polymer composite degradation on a ply-by-ply basis. The degradation is correlated with a measured Ph factor and is represented by voids, temperature, and moisture which vary parabolically for voids and linearly for temperature and moisture through the laminate thickness. The simulation is performed by a computational composite mechanics computer code which includes micro, macro, combined stress failure, and laminate theories. This accounts for starting the simulation from constitutive material properties and up to the laminate scale which exposes the laminate to the corrosive environment. Results obtained for one laminate indicate that the ply-by-ply managed degradation degrades the laminate to the last one or the last several plies. Results also demonstrate that the simulation is applicable to other polymer composite systems as well.

  14. The Explosion Mechanism of Core-Collapse Supernovae: Progress in Supernova Theory and Experiments

    SciTech Connect

    Foglizzo, Thierry; Kazeroni, Rémi; Guilet, Jérôme; Masset, Frédéric; González, Matthias; Krueger, Brendan K.; Novak, Jérôme; Faure, Julien; Martin, Noël; Blottiau, Patrick; Peres, Bruno; Durand, Gilles

    2015-01-01

    The explosion of core-collapse supernova depends on a sequence of events taking place in less than a second in a region of a few hundred kilometers at the center of a supergiant star, after the stellar core approaches the Chandrasekhar mass and collapses into a proto-neutron star, and before a shock wave is launched across the stellar envelope. Theoretical efforts to understand stellar death focus on the mechanism which transforms the collapse into an explosion. Progress in understanding this mechanism is reviewed with particular attention to its asymmetric character. We highlight a series of successful studies connecting observations of supernova remnants and pulsars properties to the theory of core-collapse using numerical simulations. The encouraging results from first principles models in axisymmetric simulations is tempered by new puzzles in 3D. The diversity of explosion paths and the dependence on the pre-collapse stellar structure is stressed, as well as the need to gain a better understanding of hydrodynamical and MHD instabilities such as SASI and neutrino-driven convection. The shallow water analogy of shock dynamics is presented as a comparative system where buoyancy effects are absent. This dynamical system can be studied numerically and also experimentally with a water fountain. Lastly, we analyse the potential of this complementary research tool for supernova theory. We also review its potential for public outreach in science museums.

  15. The Explosion Mechanism of Core-Collapse Supernovae: Progress in Supernova Theory and Experiments

    DOE PAGES

    Foglizzo, Thierry; Kazeroni, Rémi; Guilet, Jérôme; Masset, Frédéric; González, Matthias; Krueger, Brendan K.; Novak, Jérôme; Oertel, Micaela; Margueron, Jérôme; Faure, Julien; et al

    2015-01-01

    The explosion of core-collapse supernova depends on a sequence of events taking place in less than a second in a region of a few hundred kilometers at the center of a supergiant star, after the stellar core approaches the Chandrasekhar mass and collapses into a proto-neutron star, and before a shock wave is launched across the stellar envelope. Theoretical efforts to understand stellar death focus on the mechanism which transforms the collapse into an explosion. Progress in understanding this mechanism is reviewed with particular attention to its asymmetric character. We highlight a series of successful studies connecting observations of supernovamore » remnants and pulsars properties to the theory of core-collapse using numerical simulations. The encouraging results from first principles models in axisymmetric simulations is tempered by new puzzles in 3D. The diversity of explosion paths and the dependence on the pre-collapse stellar structure is stressed, as well as the need to gain a better understanding of hydrodynamical and MHD instabilities such as SASI and neutrino-driven convection. The shallow water analogy of shock dynamics is presented as a comparative system where buoyancy effects are absent. This dynamical system can be studied numerically and also experimentally with a water fountain. Lastly, we analyse the potential of this complementary research tool for supernova theory. We also review its potential for public outreach in science museums.« less

  16. Geophysical mapping of solution and collapse dolines

    NASA Astrophysics Data System (ADS)

    Kaufmann, Georg

    2014-05-01

    Karst rocks such as limestone, dolomite, anhydrite, gypsum, or salt can be dissolved physically by water or chemically by water enriched with carbon dioxide. The dissolution driven by water flowing through the karst aquifer either occurs along fractures and bedding partings in telogenetic rocks, or within the primary interconnected pore space in eogenetic rocks. The enlargement of either fractures or pores by dissolution creates a large secondary porosity typical for karst rocks, which is often very heterogenously distributed and results in preferential flow pathes in the sub-surface, with cavities as large-scale end members of the sub-surface voids. Once the sub-surface voids enlarged by dissolution grow to a certain size, the overburden rock can become instable and voids and caves can collapse. Depending of the type of overburden, the collapse initiated at depth propagates towards the surface and finally results in a collapse structure, such as collapse dolines, sinkholes, and tiangkengs on the very large scale. We present results from geophysical surveys over existing karst structures based on gravimetric, electrical, and geomagnetical methods. We have chosen two types of dolines, solution and collapse dolines, to capture and compare the geophysical signals resulting from these karst structures. We compare and discuss our geophysical survey results with simplified theoretical models describing the evolution of the karst structure and three-dimensional structural models for the current situation derived for the different locations.

  17. Systematic and simulation-free coarse graining of homopolymer melts: A structure-based study

    SciTech Connect

    Yang, Delian; Wang, Qiang

    2015-02-07

    We propose a systematic and simulation-free strategy for coarse graining of homopolymer melts, where each chain of N{sub m} monomers is uniformly divided into N segments, with the spatial position of each segment corresponding to the center-of-mass of its monomers. We use integral-equation theories suitable for the study of equilibrium properties of polymers, instead of many-chain molecular simulations, to obtain the structural and thermodynamic properties of both original and coarse-grained (CG) systems, and quantitatively examine how the effective pair potentials between CG segments and the thermodynamic properties of CG systems vary with N. Our systematic and simulation-free strategy is much faster than those using many-chain simulations, thus effectively solving the transferability problem in coarse graining, and provides the quantitative basis for choosing the appropriate N-values. It also avoids the problems caused by finite-size effects and statistical uncertainties in many-chain simulations. Taking the simple hard-core Gaussian thread model [K. S. Schweizer and J. G. Curro, Chem. Phys. 149, 105 (1990)] as the original system, we demonstrate our strategy applied to structure-based coarse graining, which is quite general and versatile, and compare in detail the various integral-equation theories and closures for coarse graining. Our numerical results show that the effective CG potentials for various N and closures can be collapsed approximately onto the same curve, and that structure-based coarse graining cannot give thermodynamic consistency between original and CG systems at any N < N{sub m}.

  18. Damage tolerant design using collapse techniques

    NASA Technical Reports Server (NTRS)

    Haftka, R. T.

    1982-01-01

    A new approach to the design of structures for improved global damage tolerance is presented. In its undamaged condition the structure is designed subject to strength, displacement and buckling constraints. In the damaged condition the only constraint is that the structure will not collapse. The collapse load calculation is formulated as a maximization problem and solved by an interior extended penalty function. The design for minimum weight subject to constraints on the undamaged structure and a specified level of the collapse load is a minimization problem which is also solved by a penalty function formulation. Thus the overall problem is of a nested or multilevel optimization. Examples are presented to demonstrate the difference between the present and more traditional approaches.

  19. Growth cone collapse assay.

    PubMed

    Cook, Geoffrey M W; Jareonsettasin, Prem; Keynes, Roger J

    2014-01-01

    The growth cone collapse assay has proved invaluable in detecting and purifying axonal repellents. Glycoproteins/proteins present in detergent extracts of biological tissues are incorporated into liposomes, added to growth cones in culture and changes in morphology are then assessed. Alternatively purified or recombinant molecules in aqueous solution may be added directly to the cultures. In both cases after a defined period of time (up to 1 h), the cultures are fixed and then assessed by inverted phase contrast microscopy for the percentage of growth cones showing a collapsed profile with loss of flattened morphology, filopodia, and lamellipodia.

  20. Collapsible high gain antenna

    NASA Technical Reports Server (NTRS)

    Cribb, H. E. (Inventor)

    1973-01-01

    A lightweight small high gain antenna which is capable of being packaged in a collapsed form and automatically expanded when in use is described. The antenna includes a cylindrical housing having a rod with a piston adjacent to one end extending through it. Attached to the outer end of the rod in a normally collapsed state is a helical wire coil. When the gas producing means is activated the piston and rod are shifted outwardly to expand the wire coil. A latch is provided for holding the helical coil in the expanded position.

  1. Dynamical collapse of trajectories

    NASA Astrophysics Data System (ADS)

    Biemond, J. J. Benjamin; de Moura, Alessandro P. S.; Grebogi, Celso; van de Wouw, Nathan; Nijmeijer, Henk

    2012-04-01

    Friction induces unexpected dynamical behaviour. In the paradigmatic pendulum and double-well systems with friction, modelled with differential inclusions, distinct trajectories can collapse onto a single point. Transversal homoclinic orbits display collapse and generate chaotic saddles with forward dynamics that is qualitatively different from the backward dynamics. The space of initial conditions converging to the chaotic saddle is fractal, but the set of points diverging from it is not: friction destroys the complexity of the forward dynamics by generating a unique horseshoe-like topology.

  2. Multi-Dimensional Full Boltzmann-Neutrino-Radiation Hydrodynamic Simulations and Their Detailed Comparisons with Monte-Carlo Methods in Core Collapse Supernovae

    NASA Astrophysics Data System (ADS)

    Nagakura, H.; Richers, S.; Ott, C. D.; Iwakami, W.; Furusawa, S.; Sumiyoshi, K.; Yamada, S.; Matsufuru, H.; Imakura, A.

    2016-10-01

    We have developed a 7-dimensional Full Boltzmann-neutrino-radiation-hydrodynamical code and carried out ab-initio axisymmetric CCSNe simulations. I will talk about main results of our simulations and also discuss current ongoing projects.

  3. Visualizing Structure and Dynamics of Disaccharide Simulations

    SciTech Connect

    Matthews, J. F.; Beckham, G. T.; Himmel, M. E.; Crowley, M. F.

    2012-01-01

    We examine the effect of several solvent models on the conformational properties and dynamics of disaccharides such as cellobiose and lactose. Significant variation in timescale for large scale conformational transformations are observed. Molecular dynamics simulation provides enough detail to enable insight through visualization of multidimensional data sets. We present a new way to visualize conformational space for disaccharides with Ramachandran plots.

  4. Four tails problems for dynamical collapse theories

    NASA Astrophysics Data System (ADS)

    McQueen, Kelvin J.

    2015-02-01

    The primary quantum mechanical equation of motion entails that measurements typically do not have determinate outcomes, but result in superpositions of all possible outcomes. Dynamical collapse theories (e.g. GRW) supplement this equation with a stochastic Gaussian collapse function, intended to collapse the superposition of outcomes into one outcome. But the Gaussian collapses are imperfect in a way that leaves the superpositions intact. This is the tails problem. There are several ways of making this problem more precise. But many authors dismiss the problem without considering the more severe formulations. Here I distinguish four distinct tails problems. The first (bare tails problem) and second (structured tails problem) exist in the literature. I argue that while the first is a pseudo-problem, the second has not been adequately addressed. The third (multiverse tails problem) reformulates the second to account for recently discovered dynamical consequences of collapse. Finally the fourth (tails problem dilemma) shows that solving the third by replacing the Gaussian with a non-Gaussian collapse function introduces new conflict with relativity theory.

  5. Collapsing Enormous Stars

    NASA Astrophysics Data System (ADS)

    Kohler, Susanna

    2015-09-01

    One of the big puzzles in astrophysics is how supermassive black holes (SMBHs) managed to grow to the large sizes weve observed in the very early universe. In a recent study, a team of researchers examines the possibility that they were formed by the direct collapse of supermassive stars.Formation MysterySMBHs billions of times as massive as the Sun have been observed at a time when the universe was less than a billion years old. But thats not enough time for a stellar-mass black hole to grow to SMBH-size by accreting material so another theory is needed to explain the presence of these monsters so early in the universes history. A new study, led by Tatsuya Matsumoto (Kyoto University, Japan), poses the following question: what if supermassive stars in the early universe collapsed directly into black holes?Previous studies of star formation in the early universe have suggested that, in the hot environment of these primordial times, stars might have been able to build up mass much faster than they can today. This could result in early supermassive stars roughly 100,000 times more massive than the Sun. But if these early stars end their lives by collapsing to become massive black holes in the same way that we believe massive stars can collapse to form stellar-mass black holes today this should result in enormously violent explosions. Matusmoto and collaborators set out to model this process, to determine what we would expect to see when it happens!Energetic BurstsThe authors modeled the supermassive stars prior to collapse and then calculated whether a jet, created as the black hole grows at the center of the collapsing star, would be able to punch out of the stellar envelope. They demonstrated that the process would work much like the widely-accepted collapsar model of massive-star death, in which a jet successfully punches out of a collapsing star, violently releasing energy in the form of a long gamma-ray burst (GRB).Because the length of a long GRB is thought to

  6. Arsia Mons Collapse Pits in IR

    NASA Technical Reports Server (NTRS)

    2004-01-01

    [figure removed for brevity, see original site]

    We will be looking at collapse pits for the next two weeks. Collapse pits on Mars are formed in several ways. In volcanic areas, channelized lava flows can form roofs which insulate the flowing lava. These features are termed lava tubes on Earth and are common features in basaltic flows. After the lava has drained, parts of the roof of the tube will collapse under its own weight. These collapse pits will only be as deep as the bottom of the original lava tube. Another type of collapse feature associated with volcanic areas arises when very large eruptions completely evacuate the magma chamber beneath the volcano. The weight of the volcano will cause the entire edifice to subside into the void space below it. Structural features including fractures and graben will form during the subsidence. Many times collapse pits will form within the graben. In addition to volcanic collapse pits, Mars has many collapse pits formed when volatiles (such as subsurface ice) are released from the surface layers. As the volatiles leave, the weight of the surrounding rock causes collapse pits to form.

    These collapse pits are found on the flank of Arsia Mons and are related to lava tube collapse.

    Image information: IR instrument. Latitude -8.8, Longitude 240.4 East (119.6 West). 100 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA's Office of Space Science, Washington, D.C. The Thermal

  7. Caldera collapse at near-ridge seamounts: an experimental investigation

    NASA Astrophysics Data System (ADS)

    Coumans, Jason P.; Stix, John

    2016-10-01

    Collapse calderas are sub-circular volcanic depressions caused by subsidence of the magma reservoir roof during an eruption. Scaled physical models of caldera collapse using flat topography have been instrumental in investigating the spatial and temporal development of calderas, in particular, two distinctive sets of concentric ring faults, one reverse and one normal. More recent analog studies have investigated the effect of non-flat topography which alters the principle stress trajectories and resulting collapse structure. This work provides the basis for investigating how naturally scaled topographic loads may affect caldera collapse in relation to shallow magma reservoirs. The objective of this study is to understand how a near-ridge seamount affects caldera collapse from both a central and offset position as the seamount migrates above the magma reservoir as a result of plate motion. We utilize scaled analog models of caldera collapse in conjunction with three-dimensional (3D) laser scanning and digital particle image velocimetry (DPIV) to investigate caldera collapse dynamics at near-ridge seamounts. Experiments using a seamount cone positioned centrally above the magma reservoir result in (1) increased subsidence along the interior outward-dipping faults and (2) a preference to more symmetric collapse patterns as indicated by the subsidence profile and structure of the caldera relative to experiments with an offset cone. When the cone is offset, the collapse is asymmetric and trapdoor in nature, with the center of greatest subsidence displaced away from the region of largest topographic load. For these latter experiments, subsidence is focused where the roof is thinnest along an initial reverse fault, followed by a transition to an antithetic graben structure. The asymmetric collapse in the experiments results in a caldera with a tilted profile. Offset calderas at near-ridge seamounts are tilted towards the ridge axis, suggesting that they may have collapsed

  8. Chapter 2: Simulations of the Structure of Cellulose

    SciTech Connect

    Matthews, J. F.; Himmel, M. E.; Brady, J. W.

    2010-01-01

    Cellulose is the homopolymer of (1 {yields} 4)-{beta}-D-glucose. The chemical composition of this polymer is simple, but understanding the conformation and packing of cellulose molecules is challenging. This chapter describes the structure of cellulose from the perspective of molecular mechanics simulations, including conformational analysis of cellobiose and simulations of hydrated cellulose I{beta} with CSFF and GLYCAM06, two sets of force field parameters developed specifically for carbohydrates. Many important features observed in these simulations are sensitive to differences in force field parameters, giving rise to dramatically different structures. The structures and properties of non-naturally occurring cellulose allomorphs (II, III, and IV) are also discussed.

  9. Analysis of volatile organic compounds released from the decay of surrogate human models simulating victims of collapsed buildings by thermal desorption-comprehensive two-dimensional gas chromatography-time of flight mass spectrometry.

    PubMed

    Agapiou, A; Zorba, E; Mikedi, K; McGregor, L; Spiliopoulou, C; Statheropoulos, M

    2015-07-01

    Field experiments were devised to mimic the entrapment conditions under the rubble of collapsed buildings aiming to investigate the evolution of volatile organic compounds (VOCs) during the early dead body decomposition stage. Three pig carcasses were placed inside concrete tunnels of a search and rescue (SAR) operational field terrain for simulating the entrapment environment after a building collapse. The experimental campaign employed both laboratory and on-site analytical methods running in parallel. The current work focuses only on the results of the laboratory method using thermal desorption coupled to comprehensive two-dimensional gas chromatography with time-of-flight mass spectrometry (TD-GC×GC-TOF MS). The flow-modulated TD-GC×GC-TOF MS provided enhanced separation of the VOC profile and served as a reference method for the evaluation of the on-site analytical methods in the current experimental campaign. Bespoke software was used to deconvolve the VOC profile to extract as much information as possible into peak lists. In total, 288 unique VOCs were identified (i.e., not found in blank samples). The majority were aliphatics (172), aromatics (25) and nitrogen compounds (19), followed by ketones (17), esters (13), alcohols (12), aldehydes (11), sulfur (9), miscellaneous (8) and acid compounds (2). The TD-GC×GC-TOF MS proved to be a sensitive and powerful system for resolving the chemical puzzle of above-ground "scent of death". PMID:26088782

  10. Analysis of volatile organic compounds released from the decay of surrogate human models simulating victims of collapsed buildings by thermal desorption-comprehensive two-dimensional gas chromatography-time of flight mass spectrometry.

    PubMed

    Agapiou, A; Zorba, E; Mikedi, K; McGregor, L; Spiliopoulou, C; Statheropoulos, M

    2015-07-01

    Field experiments were devised to mimic the entrapment conditions under the rubble of collapsed buildings aiming to investigate the evolution of volatile organic compounds (VOCs) during the early dead body decomposition stage. Three pig carcasses were placed inside concrete tunnels of a search and rescue (SAR) operational field terrain for simulating the entrapment environment after a building collapse. The experimental campaign employed both laboratory and on-site analytical methods running in parallel. The current work focuses only on the results of the laboratory method using thermal desorption coupled to comprehensive two-dimensional gas chromatography with time-of-flight mass spectrometry (TD-GC×GC-TOF MS). The flow-modulated TD-GC×GC-TOF MS provided enhanced separation of the VOC profile and served as a reference method for the evaluation of the on-site analytical methods in the current experimental campaign. Bespoke software was used to deconvolve the VOC profile to extract as much information as possible into peak lists. In total, 288 unique VOCs were identified (i.e., not found in blank samples). The majority were aliphatics (172), aromatics (25) and nitrogen compounds (19), followed by ketones (17), esters (13), alcohols (12), aldehydes (11), sulfur (9), miscellaneous (8) and acid compounds (2). The TD-GC×GC-TOF MS proved to be a sensitive and powerful system for resolving the chemical puzzle of above-ground "scent of death".

  11. Protostellar Collapse Using Multigroup Radiation Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Vaytet, N.; Chabrier, G.; Audit, E.; Commerçon, B.; Masson, J.; González, M.; Ferguson, J.; Delahaye, F.

    2015-10-01

    Many simulations of protostellar collapse make use of a grey treatment of radiative transfer coupled to the hydrodynamics. However, interstellar gas and dust opacities present large variations as a function of frequency. In this paper, we present multigroup radiation hydrodynamics simulations of the collapse of a spherically symmetric cloud and the formation of the first and second Larson cores. We have used a non-ideal gas equation of state as well as an extensive set of spectral opacities. Small differences between grey and multigroup simulations were observed. The first and second core accretion shocks were found to be super- and sub-critical, respectively. Varying the initial size and mass of the parent cloud had little impact on the core properties (especially for the second core). We finally present early results from 3D simulations that were performed using the RAMSES code.

  12. Scaling of curvature in subcritical gravitational collapse

    NASA Astrophysics Data System (ADS)

    Garfinkle, David; Duncan, G. Comer

    1998-09-01

    We perform numerical simulations of the gravitational collapse of a spherically symmetric scalar field. For those data that just barely do not form black holes we find the maximum curvature at the position of the central observer. We find a scaling relation between this maximum curvature and distance from the critical solution. The scaling relation is analogous to that found by Choptuik for the black hole mass for those data that do collapse to form black holes. We also find a periodic wiggle in the scaling exponent.

  13. Collapse analysis of a waffle plate strongback for Space Station Freedom

    NASA Technical Reports Server (NTRS)

    Monasa, Frank F.; Roche, Joseph M.

    1992-01-01

    The structural integrity was studied of the Integrated Equipment Assembly (IEA) Strongback of the SSF for the launch environment. The strongback structure supports the electrical power system for SSF. To achieve minimum launch mass, it is essential that flight structures are designed as light as possible. A nonlinear structural analysis was conducted to determine the collapse load of the structure and the associated factor of safety against the service loads. A modeling technique is provided for simulating the load conditions and the buckling and post buckling (collapse) load is evaluated of the IEA Strongback structure, using the finite element computer code MARC. Two of four strongback panels were modeled and analyzed. The effects were examined of the following factors on the global behavior of the strongback panels: (1) load simplification and simulation; (2) type of support boundary conditions; and (3) the possibility of weight reduction of the original structure. For this purpose, several models of the two panels of the strongback were considered. The stress level and distribution in the panels for launch condition, the Eigenvalue critical buckling load and/or the collapse load were determined.

  14. Mechanics of collapsing cavitation bubbles.

    PubMed

    van Wijngaarden, Leen

    2016-03-01

    A brief survey is given of the dynamical phenomena accompanying the collapse of cavitation bubbles. The discussion includes shock waves, microjets and the various ways in which collapsing bubbles produce damage.

  15. Air flow in a collapsing cavity

    NASA Astrophysics Data System (ADS)

    Peters, Ivo R.; Gekle, Stephan; Lohse, Detlef; van der Meer, Devaraj

    2013-03-01

    We experimentally study the airflow in a collapsing cavity created by the impact of a circular disc on a water surface. We measure the air velocity in the collapsing neck in two ways: Directly, by means of employing particle image velocimetry of smoke injected into the cavity and indirectly, by determining the time rate of change of the volume of the cavity at pinch-off and deducing the air flow in the neck under the assumption that the air is incompressible. We compare our experiments to boundary integral simulations and show that close to the moment of pinch-off, compressibility of the air starts to play a crucial role in the behavior of the cavity. Finally, we measure how the air flow rate at pinch-off depends on the Froude number and explain the observed dependence using a theoretical model of the cavity collapse.

  16. Simulation of Sintering of Layered Structures

    SciTech Connect

    OLEVSKY,EUGENE; TIKARE,VEENA; GARINO,TERRY J.; BRAGINSKY,MICHAEL V.

    2000-11-22

    An integrated approach, combining the continuum theory of sintering and Potts model based mesostructure evolution analysis, is used to solve the problem of bi-layered structure sintering. Two types of bi-layered structures are considered: layers of the same material with different initial porosity, and layers of two different materials. The effective sintering stress for the bi-layer powder sintering is derived, both at the meso- and the macroscopic levels. Macroscopic shape distortions and spatial distributions of porosity are determined as functions of the dimensionless specific time of sintering. The effect of the thickness of the layers on shrinkage, warpage, and pore-grain structure is studied. Ceramic ZnO powders are employed as a model experimental system to assess the model predictions.

  17. Design of Accelerator Online Simulator Server Using Structured Data

    SciTech Connect

    Shen, Guobao; Chu, Chungming; Wu, Juhao; Kraimer, Martin; /Argonne

    2012-07-06

    Model based control plays an important role for a modern accelerator during beam commissioning, beam study, and even daily operation. With a realistic model, beam behaviour can be predicted and therefore effectively controlled. The approach used by most current high level application environments is to use a built-in simulation engine and feed a realistic model into that simulation engine. Instead of this traditional monolithic structure, a new approach using a client-server architecture is under development. An on-line simulator server is accessed via network accessible structured data. With this approach, a user can easily access multiple simulation codes. This paper describes the design, implementation, and current status of PVData, which defines the structured data, and PVAccess, which provides network access to the structured data.

  18. Bubble-Induced Cave Collapse

    PubMed Central

    Girihagama, Lakshika; Nof, Doron; Hancock, Cathrine

    2015-01-01

    Conventional wisdom among cave divers is that submerged caves in aquifers, such as in Florida or the Yucatan, are unstable due to their ever-growing size from limestone dissolution in water. Cave divers occasionally noted partial cave collapses occurring while they were in the cave, attributing this to their unintentional (and frowned upon) physical contact with the cave walls or the aforementioned “natural” instability of the cave. Here, we suggest that these cave collapses do not necessarily result from cave instability or contacts with walls, but rather from divers bubbles rising to the ceiling and reducing the buoyancy acting on isolated ceiling rocks. Using familiar theories for the strength of flat and arched (un-cracked) beams, we first show that the flat ceiling of a submerged limestone cave can have a horizontal expanse of 63 meters. This is much broader than that of most submerged Florida caves (~ 10 m). Similarly, we show that an arched cave roof can have a still larger expanse of 240 meters, again implying that Florida caves are structurally stable. Using familiar bubble dynamics, fluid dynamics of bubble-induced flows, and accustomed diving practices, we show that a group of 1-3 divers submerged below a loosely connected ceiling rock will quickly trigger it to fall causing a “collapse”. We then present a set of qualitative laboratory experiments illustrating such a collapse in a circular laboratory cave (i.e., a cave with a circular cross section), with concave and convex ceilings. In these experiments, a metal ball represented the rock (attached to the cave ceiling with a magnet), and the bubbles were produced using a syringe located at the cave floor. PMID:25849088

  19. Collapse of an antibubble

    NASA Astrophysics Data System (ADS)

    Zou, Jun; Ji, Chen; Yuan, BaoGang; Ruan, XiaoDong; Fu, Xin

    2013-06-01

    In contrast to a soap bubble, an antibubble is a liquid globule surrounded by a thin film of air. The collapse behavior of an antibubble is studied using a high-speed video camera. It is found that the retraction velocity of the thin air film of antibubbles depends on the thickness of the air film, e, the surface tension coefficient σ, etc., and varies linearly with (σ/ρe)1/2, according to theoretical analysis and experimental observations. During the collapse of the antibubble, many tiny bubbles can be formed at the rim of the air film due to the Rayleigh instability. In most cases, a larger bubble will emerge finally, which holds most of the volume of the air film.

  20. Collapse of an antibubble.

    PubMed

    Zou, Jun; Ji, Chen; Yuan, BaoGang; Ruan, XiaoDong; Fu, Xin

    2013-06-01

    In contrast to a soap bubble, an antibubble is a liquid globule surrounded by a thin film of air. The collapse behavior of an antibubble is studied using a high-speed video camera. It is found that the retraction velocity of the thin air film of antibubbles depends on the thickness of the air film, e, the surface tension coefficient σ, etc., and varies linearly with (σ/ρe)(1/2), according to theoretical analysis and experimental observations. During the collapse of the antibubble, many tiny bubbles can be formed at the rim of the air film due to the Rayleigh instability. In most cases, a larger bubble will emerge finally, which holds most of the volume of the air film. PMID:23848619

  1. Tests for intact and collapsed magnetofossil chains

    NASA Astrophysics Data System (ADS)

    Egli, R.

    2012-04-01

    In recent years, new techniques for the detection of magnetofossils have been proposed, based on their unique first-order reversal curves (FORC) and ferromagnetic resonance (FMR) signatures. These signatures are related to the non-interacting (FORC) and strongly uniaxial anisotropy (FMR) of isolated chains of magnetic particles. However, little is known about the fate of these signatures in sediments where magnetosome chains collapsed during early diagenetic processes. Due to the impossibility of observing the particle arrangement in-situ, the structure of collapsed chains can only be inferred from TEM images of magnetic extracts and from first-principles consideration on the mechanical stability of magnetosome chains once the biological material around them is dissolved. The magnetic properties of double chains, produced by some strains of cocci, are also not known. According to these considerations, four main magnetofossil structures were taken into consideration: (1) isolated, linear chains, (2) double, half-staggered chains, where the gaps of one chain face the magnetosomes in the other chain, (3) double chains with side-to-side magnetosomes, which might result from a "jackknife" type of collapse of a single, long chain, and (4) zig-zag collapsed chains of elongated crystals, where the magnetosome long axes are perpendicular to the chain axis. The collapsed structures might be relevant in sediments where magnetofossils carry a significant part of the remanent magnetization, because chain collapse tends to cancel the original natural remanent magnetization. Detailed models for the hysteretic and anhysteretic properties of structures (1-4) have been calculated by taking realistic distributions of magnetosome size, elongation, and spacing into account, as inferred from a number of published TEM observations. Model calculations took a total of >2 years continuous running time on two computers in an effort to obtain realistic results, which are shown here for the

  2. Dynamics of adaptive structures: Design through simulations

    NASA Technical Reports Server (NTRS)

    Park, K. C.; Alexander, S.

    1993-01-01

    The use of a helical bi-morph actuator/sensor concept by mimicking the change of helical waveform in bacterial flagella is perhaps the first application of bacterial motions (living species) to longitudinal deployment of space structures. However, no dynamical considerations were analyzed to explain the waveform change mechanisms. The objective is to review various deployment concepts from the dynamics point of view and introduce the dynamical considerations from the outset as part of design considerations. Specifically, the impact of the incorporation of the combined static mechanisms and dynamic design considerations on the deployment performance during the reconfiguration stage is studied in terms of improved controllability, maneuvering duration, and joint singularity index. It is shown that intermediate configurations during articulations play an important role for improved joint mechanisms design and overall structural deployability.

  3. A Method of Simulating Fluid Structure Interactions for Deformable Decelerators

    NASA Astrophysics Data System (ADS)

    Gidzak, Vladimyr Mykhalo

    A method is developed for performing simulations that contain fluid-structure interactions between deployable decelerators and a high speed compressible flow. The problem of coupling together multiple physical systems is examined with discussion of the strength of coupling for various methods. A non-monolithic strongly coupled option is presented for fluid-structure systems based on grid deformation. A class of algebraic grid deformation methods is then presented with examples of increasing complexity. The strength of the fluid-structure coupling is validated against two analytic problems, chosen to test the time dependent behavior of structure on fluid interactions, and of fluid on structure interruptions. A one-dimentional material heating model is also validated against experimental data. Results are provided for simulations of a wind tunnel scale disk-gap-band parachute with comparison to experimental data. Finally, a simulation is performed on a flight scale tension cone decelerator, with examination of time-dependent material stress, and heating.

  4. Estimating Building Simulation Parameters via Bayesian Structure Learning

    SciTech Connect

    Edwards, Richard E; New, Joshua Ryan; Parker, Lynne Edwards

    2013-01-01

    Many key building design policies are made using sophisticated computer simulations such as EnergyPlus (E+), the DOE flagship whole-building energy simulation engine. E+ and other sophisticated computer simulations have several major problems. The two main issues are 1) gaps between the simulation model and the actual structure, and 2) limitations of the modeling engine's capabilities. Currently, these problems are addressed by having an engineer manually calibrate simulation parameters to real world data or using algorithmic optimization methods to adjust the building parameters. However, some simulations engines, like E+, are computationally expensive, which makes repeatedly evaluating the simulation engine costly. This work explores addressing this issue by automatically discovering the simulation's internal input and output dependencies from 20 Gigabytes of E+ simulation data, future extensions will use 200 Terabytes of E+ simulation data. The model is validated by inferring building parameters for E+ simulations with ground truth building parameters. Our results indicate that the model accurately represents parameter means with some deviation from the means, but does not support inferring parameter values that exist on the distribution's tail.

  5. Aromatic Structure in Simulates Titan Aerosol

    NASA Technical Reports Server (NTRS)

    Trainer, Melissa G.; Loeffler, M. J.; Anderson, C. M.; Hudson, R. L.; Samuelson, R. E.; Moore, M. A.

    2011-01-01

    Observations of Titan by the Cassini Composite Infrared Spectrometer (CIRS) between 560 and 20 per centimeter (approximately 18 to 500 micrometers) have been used to infer the vertical variations of Titan's ice abundances, as well as those of the aerosol from the surface to an altitude of 300 km [1]. The aerosol has a broad emission feature centered approximately at 140 per centimeter (71 micrometers). As seen in Figure 1, this feature cannot be reproduced using currently available optical constants from laboratory-generated Titan aerosol analogs [2]. The far-IR is uniquely qualified for investigating low-energy vibrational motions within the lattice structures of COITIDlex aerosol. The feature observed by CIRS is broad, and does not likely arise from individual molecules, but rather is representative of the skeletal movements of macromolecules. Since Cassini's arrival at Titan, benzene (C6H6) has been detected in the atmosphere at ppm levels as well as ions that may be polycyclic aromatic hydrocarbons (PAHs) [3]. We speculate that the feature may be a blended composite that can be identified with low-energy vibrations of two-dimensional lattice structures of large molecules, such as PAHs or nitrogenated aromatics. Such structures do not dominate the composition of analog materials generated from CH4 and N2 irradiation. We are performing studies forming aerosol analog via UV irradiation of aromatic precursors - specifically C6H6 - to understand how the unique chemical architecture of the products will influence the observable aerosol characteristics. The optical and chemical properties of the aromatic analog will be compared to those formed from CH4/N2 mixtures, with a focus on the as-yet unidentified far-IR absorbance feature. Preliminary results indicate that the photochemically-formed aromatic aerosol has distinct chemical composition, and may incorporate nitrogen either into the ring structure or adjoined chemical groups. These compositional differences are

  6. Protostellar collapse in a self-gravitating sheet

    NASA Technical Reports Server (NTRS)

    Hartmann, Lee; Boss, Alan; Calvet, Nuria; Whitney, Barbara

    1994-01-01

    We present preliminary calculations of protostellar cloud collapse starting from an isothermal, self-gravitating gaseous layer in hydrostatic equilibrium. This gravitationally unstable layer collapses into a flattened or toroidal density distribution, even in the absence of rotation or magnetic fields. We suggest that the flat infalling envelope recently observed in HL Tau by Hayashi et al.is the result of collapse from an initially nonspherical layer. We also speculate that the later evolution of such a flattened, collapsing envelope can produce a structure similar to the 'flared disk' invoked by Kenyon and Hartmann to explain the infrared excesses of many T Tauri stars.

  7. Modeling and Simulation of Semiconductor Quantum Well Structures and Lasers

    NASA Technical Reports Server (NTRS)

    Ning, Cun-Zheng; Saini, Subbash (Technical Monitor)

    1998-01-01

    In this talk I will cover two aspects of modeling and simulation efforts at NASA Ames Research Center. In the quantum well structure simulation, we typically start from the quantum mechanical calculation of the quantum well structures for the confined/and unconfined eigen states and functions. A bandstructure calculation of the k*p type is then performed for the confined valence states. This information is then used to computer the optical gain and refractive index of the quantum well structures by solving the linearized multiband semiconductor Bloch equations with the many-body interactions included. In our laser simulation, we typically solve the envelope equations for the laser field in space-time domain, coupled with a reduced set of material equations using the microscopic calculation of the first step. Finally I will show some examples of both aspects of simulation and modeling.

  8. Transverse wake field simulations for the ILC acceleration structure

    SciTech Connect

    Solyak, N.; Lunin, A.; Yakovlev, V.; /Fermilab

    2008-06-01

    Details of wake potential simulation in the acceleration structure of ILC, including the RF cavities and input/HOM couplers are presented. Transverse wake potential dependence is described versus the bunch length. Beam emittance dilution caused by main and HOM couplers is estimated, followed by a discussion of possible structural modifications allowing a reduction of transverse wake potential.

  9. Computer simulation of the scaled power bipolar SHF transistor structures

    NASA Astrophysics Data System (ADS)

    Nelayev, V. V.; Efremov, V. A.; Snitovsky, Yu. P.

    2007-04-01

    New advanced technology for creation of the npn power silicon bipolar SHF transistor structure is proposed. Preferences of the advanced technology in comparison with standard technology are demonstrated. Simulation of both technology flows was performed with emphasis on scaling of the discussed device structure.

  10. Geophysical mapping of solution and collapse sinkholes

    NASA Astrophysics Data System (ADS)

    Kaufmann, Georg

    2014-12-01

    Karst rocks such as limestone, dolomite, anhydrite, gypsum, or salt can be dissolved physically by water or chemically by water enriched with carbon dioxide. The dissolution is driven by water flowing through the karst aquifer and either occurs along fractures and bedding partings in telogenetic rocks, or within the primary interconnected pore space in eogenetic rocks. The enlargement of either fractures or pores by dissolution creates a large secondary porosity typical of soluble rocks, which is often very heterogenously distributed and results in preferential flow paths in the sub-surface, with cavities as large-scale end members of the sub-surface voids. Once the sub-surface voids enlarged by dissolution grow to a certain size, the overburden rock can become unstable and voids and caves can collapse. Depending on the type of overburden, the collapse initiated at depth may propagate towards the surface and finally results at the surface as collapse sinkholes and tiangkengs on the very large scale. We present results from geophysical surveys over existing karst structures based on gravimetric, electrical, and geomagnetical methods. We have chosen two types of sinkholes, solution and collapse sinkholes, to capture and compare the geophysical signals resulting from these karst structures. We compare and discuss our geophysical survey results with simplified theoretical models describing the evolution of the karst structure, and we derive three-dimensional structural models of the current situation for the different locations with our numerical tool PREDICTOR.

  11. Structure and dynamics of complex liquid water: Molecular dynamics simulation

    NASA Astrophysics Data System (ADS)

    S, Indrajith V.; Natesan, Baskaran

    2015-06-01

    We have carried out detailed structure and dynamical studies of complex liquid water using molecular dynamics simulations. Three different model potentials, namely, TIP3P, TIP4P and SPC-E have been used in the simulations, in order to arrive at the best possible potential function that could reproduce the structure of experimental bulk water. All the simulations were performed in the NVE micro canonical ensemble using LAMMPS. The radial distribution functions, gOO, gOH and gHH and the self diffusion coefficient, Ds, were calculated for all three models. We conclude from our results that the structure and dynamical parameters obtained for SPC-E model matched well with the experimental values, suggesting that among the models studied here, the SPC-E model gives the best structure and dynamics of bulk water.

  12. Numerical simulation of three-dimensional self-gravitating flow

    NASA Technical Reports Server (NTRS)

    Shebalin, John V.

    1993-01-01

    The three-dimensional flow of a self-gravitating fluid is numerically simulated using a Fourier pseudospectral method with a logarithmic variable formulation. Two cases with zero total angular momentum are studied in detail, a 323 simulation (Run B). Other than the grid size, the primary difference between the two cases are that Run A modeled atomic hydrogen and had considerably more compressible motion initially than Run B, which modeled molecular hydrogen. The numerical results indicate that gravitational collapse can proceed in a variety of ways. In the Run A, collapse led to an elongated tube-like structure, while in the Run B, collapse led to a flatter, disklike structure.

  13. Gravitinos from gravitational collapse

    SciTech Connect

    Grifols, J.A.; Masso, E.; Toldra, R.

    1998-01-01

    We reanalyze the limits on the gravitino mass m{sub 3/2} in superlight gravitino scenarios derived from arguments on energy loss during gravitational collapse. We conclude that the mass range 10{sup {minus}6} eV{le}m{sub 3/2}{le}2.3{times}10{sup {minus}5} eV is excluded by SN 1987A data. In terms of the scale of supersymmetry breaking {Lambda}, the range 70 GeV {le}{Lambda}{le}300 GeV is not allowed. {copyright} {ital 1997} {ital The American Physical Society}

  14. Intraglobular structures in multiblock copolymer chains from a Monte Carlo simulation.

    PubMed

    Lewandowski, K; Banaszak, M

    2011-07-01

    Multiblock copolymer chains in implicit nonselective solvents are studied by using a Monte Carlo method, which employs a parallel tempering algorithm. Chains consisting of 120 A and 120 B monomers, arranged in three distinct microarchitectures: (10-10)12, (6-6)20, and (3-3)40, collapse to globular states upon cooling, as expected. By varying both the reduced temperature T* and the compatibility between monomers ω, numerous intraglobular structures are obtained: diclusters (handshake, spiral, torus with a core, etc.), triclusters, and n clusters with n>3 (lamellar and other), which are reminiscent of the block copolymer nanophases for spherically confined geometries. Phase diagrams for various chains in the (T*,ω) space are mapped. The structure factor S(k), for a selected microarchitecture and ω, is calculated. Since S(k) can be measured in scattering experiments, it can be used to relate simulation results to an experiment. Self-assembly in those systems is interpreted in terms of competition between minimization of the interfacial area separating different types of monomers and minimization of contacts between chain and solvent. Finally, the relevance of this model to the protein folding is addressed.

  15. Computational simulation for analysis and synthesis of impact resilient structure

    NASA Astrophysics Data System (ADS)

    Djojodihardjo, Harijono

    2013-10-01

    Impact resilient structures are of great interest in many engineering applications varying from civil, land vehicle, aircraft and space structures, to mention a few examples. To design such structure, one has to resort fundamental principles and take into account progress in analytical and computational approaches as well as in material science and technology. With such perspectives, this work looks at a generic beam and plate structure subject to impact loading and carry out analysis and numerical simulation. The first objective of the work is to develop a computational algorithm to analyze flat plate as a generic structure subjected to impact loading for numerical simulation and parametric study. The analysis will be based on dynamic response analysis. Consideration is given to the elastic-plastic region. The second objective is to utilize the computational algorithm for direct numerical simulation, and as a parallel scheme, commercial off-the shelf numerical code is utilized for parametric study, optimization and synthesis. Through such analysis and numerical simulation, effort is devoted to arrive at an optimum configuration in terms of loading, structural dimensions, material properties and composite lay-up, among others. Results will be discussed in view of practical applications.

  16. Controlled multibody dynamics simulation for large space structures

    NASA Technical Reports Server (NTRS)

    Housner, J. M.; Wu, S. C.; Chang, C. W.

    1989-01-01

    Multibody dynamics discipline, and dynamic simulation in control structure interaction (CSI) design are discussed. The use, capabilities, and architecture of the Large Angle Transient Dynamics (LATDYN) code as a simulation tool are explained. A generic joint body with various types of hinge connections; finite element and element coordinate systems; results of a flexible beam spin-up on a plane; mini-mast deployment; space crane and robotic slewing manipulations; a potential CSI test article; and multibody benchmark experiments are also described.

  17. Computer Simulation of Sexual Selection on Age-Structured Populations

    NASA Astrophysics Data System (ADS)

    Martins, S. G. F.; Penna, T. J. P.

    Using computer simulations of a bit-string model for age-structured populations, we found that sexual selection of older males is advantageous, from an evolutionary point of view. These results are in opposition to a recent proposal of females choosing younger males. Our simulations are based on findings from recent studies of polygynous bird species. Since secondary sex characters are found mostly in males, we could make use of asexual populations that can be implemented in a fast and efficient way.

  18. Simulating Weak Lensing by Large-Scale Structure

    NASA Astrophysics Data System (ADS)

    Vale, Chris; White, Martin

    2003-08-01

    We model weak gravitational lensing of light by large-scale structure using ray tracing through N-body simulations. The method is described with particular attention paid to numerical convergence. We investigate some of the key approximations in the multiplane ray-tracing algorithm. Our simulated shear and convergence maps are used to explore how well standard assumptions about weak lensing hold, especially near large peaks in the lensing signal.

  19. Impact and Penetration Simulations for Composite Wing-like Structures

    NASA Technical Reports Server (NTRS)

    Knight, Norman F.

    1998-01-01

    The goal of this research project was to develop methodologies for the analysis of wing-like structures subjected to impact loadings. Low-speed impact causing either no damage or only minimal damage and high-speed impact causing severe laminate damage and possible penetration of the structure were to be considered during this research effort. To address this goal, an assessment of current analytical tools for impact analysis was performed. Assessment of the analytical tools for impact and penetration simulations with regard to accuracy, modeling, and damage modeling was considered as well as robustness, efficient, and usage in a wing design environment. Following a qualitative assessment, selected quantitative evaluations will be performed using the leading simulation tools. Based on this assessment, future research thrusts for impact and penetration simulation of composite wing-like structures were identified.

  20. Understand rotating isothermal collapses yet

    SciTech Connect

    Tohline, J.E.

    1985-01-01

    A scalar virial equation is used to describe the dynamic properties of equilibrium gas clouds, taking into account the relative effects of surface pressure, rotation, self gravity and internal isothermal pressure. Details concerning the internal structure of the clouds are ignored in order to obtain a globalized analytical expression. The obtained solution to the equation is found to agree with the surface-pressure-dominated model of Stahler (1983), and the rotation-dominated model of Hayashi, Narita, and Miyama (1982). On the basis of the analytical expression of virial equilibrium in the clouds, some of the limiting properties of isothermal clouds are described, and a realistic starting model for cloud collapse is proposed. 18 references.

  1. Shearfree cylindrical gravitational collapse

    SciTech Connect

    Di Prisco, A.; Herrera, L.; MacCallum, M. A. H.; Santos, N. O.

    2009-09-15

    We consider diagonal cylindrically symmetric metrics, with an interior representing a general nonrotating fluid with anisotropic pressures. An exterior vacuum Einstein-Rosen spacetime is matched to this using Darmois matching conditions. We show that the matching conditions can be explicitly solved for the boundary values of metric components and their derivatives, either for the interior or exterior. Specializing to shearfree interiors, a static exterior can only be matched to a static interior, and the evolution in the nonstatic case is found to be given in general by an elliptic function of time. For a collapsing shearfree isotropic fluid, only a Robertson-Walker dust interior is possible, and we show that all such cases were included in Cocke's discussion. For these metrics, Nolan and Nolan have shown that the matching breaks down before collapse is complete, and Tod and Mena have shown that the spacetime is not asymptotically flat in the sense of Berger, Chrusciel, and Moncrief. The issues about energy that then arise are revisited, and it is shown that the exterior is not in an intrinsic gravitational or superenergy radiative state at the boundary.

  2. Simulated tornado debris tracks: implications for inferring corner flow structure

    NASA Astrophysics Data System (ADS)

    Zimmerman, Michael; Lewellen, David

    2011-11-01

    A large collection of three-dimensional large eddy simulations of tornadoes with fine debris have been recently been performed as part of a longstanding effort at West Virginia University to understand tornado corner flow structure and dynamics. Debris removal and deposition is accounted for at the surface, in effect simulating formation of tornado surface marks. Physical origins and properties of the most prominent marks will be presented, and the possibility of inferring tornado corner flow structure from real marks in the field will be discussed. This material is based upon work supported by the National Science Foundation under Grants No. 0635681 and AGS-1013154.

  3. Simulation approach to understanding the processes that structure food webs

    SciTech Connect

    Jager, H.I.; Gardner, R.H.; DeAngelis, D.L.; Post, W.M.

    1984-08-01

    A simulation model of food web dynamics, WEB, was constructed and used in Monte Carlo experiments to study the relationship between structure and function in food webs. Four main experiments were designed using WEB. The first tested the robustness of food web structures at equilibrium to variations in the functional response of predators in the food web to the densities of their prey. The second experiment clarified the roles of predation and resource limitation in the process of structuring food webs. A third experiment studied the influence of productivity on food web structure and function using simulated food webs. The final experiment was designed to study the differential successes of generalists and specialists. The main advantage gained by using a simulation approach in each of these experiments was the ability to assess the roles played by processes of predation and competition in structuring model food webs. This was accomplished by interpreting the order of extinction events that occurred in the simulations and relating these to the species configurations at equilibrium. 61 references, 23 figures.

  4. Stellar Iron Core Collapse in 3+1 General Relativity and The Gravitational Wave Signature of Core-Collapse Supernovae.

    NASA Astrophysics Data System (ADS)

    Ott, Christian David

    2007-04-01

    I perform and analyze the first ever calculations of rotating stellar iron core collapse in {3+1} general relativity that start out with presupernova models from stellar evolutionary calculations and include a microphysical finite-temperature nuclear equation of state, an approximate scheme for electron capture during collapse and neutrino pressure effects. Based on the results of these calculations, I obtain the to-date most realistic estimates for the gravitational wave signal from collapse, bounce and the early postbounce phase of core collapse supernovae. I supplement my {3+1} GR hydrodynamic simulations with 2D Newtonian neutrino radiation-hydrodynamic supernova calculations focussing on (1) the late postbounce gravitational wave emission owing to convective overturn, anisotropic neutrino emission and protoneutron star pulsations, and (2) on the gravitational wave signature of accretion-induced collapse of white dwarfs to neutron stars.

  5. Effects of Ni doping on the structural properties and collapse of magnetic ordering in NdFe1-xNixO3 (0.1 ≤ x ≤ 0.7) orthoferrites

    NASA Astrophysics Data System (ADS)

    I., Ahmad; J. Akhtar, M.; Siddique, M.

    2016-02-01

    NdFe1-x NixO3 (0.1 ≤ x ≤ 0.7) orthoferrites are synthesized by solid state reaction method, and the structural properties of these materials are investigated by employing x-ray diffraction (XRD), scanning electron microscopy (SEM) and Mössbauer spectroscopy. The orthorhombic structure is observed in all systems; however, with the increase in Ni doping, the increase in tolerance factor and the decrease in the cell volume are observed. Orthorhombic distortion decreases with Ni content increasing up to 50%, while above 50% Ni doping it increases. SEM examination indicates the increases in grain size and intermixing of grains with increase in Ni concentration. Comparison between bulk and theoretical densities shows that in each of all samples porosity is less than 2%. Mössbauer spectroscopic investigations are performed to explain local structure, Fe oxidation states and collapse of the magnetic ordering. In these samples the Fe oxidation state remains +3 and there is no considerable increase in hole states observed; however due to mismatch of the ionic radii between Fe3+ and Ni3+, octahedral distortions, sagging and distribution of hyperfine parameters increase with increase in Ni concentration. The major factors behind the collapse of magnetic ordering in the Ni-doped systems are the weakening of the super-exchange interactions, decrease in the Neel temperature, increase in spin-spin relaxation frequency and high spin to low spin transition.

  6. Coagulation of grains in static and collapsing protostellar clouds

    NASA Technical Reports Server (NTRS)

    Weidenschilling, S. J.; Ruzmaikina, T. V.

    1994-01-01

    We simulate collisional evolution of grains in dense turbulent molecular cloud cores (or Bok globules) in static equilibrium and free-fall collapse, assuming spherical symmetry. Relative velocities are due to thermal motions, differential settling, and turbulence, with the latter dominant for sonic turbulence with an assumed Kolmogorov spectrum. Realistic criteria are used to determine outcomes of collisions (coagulation vs. destruction) as functions of particle size and velocity. Results are presented for a variety of cloud parameters (radial density profile, turbulent velocity) and particle properties (density, impact strength). Results are sensitive to the assumed mechanical properties (density and impact strength) of grain aggregates. Particle growth is enhanced if aggregates have low density or fractal structures. On a timescale of a few Myr, an initial population of 0.1 micrometers grains may produce dense compact particles approximately 1 micrometer in size, or fluffy aggregates approximately 100 micrometers. For impact strengths less than or equal to 10(exp 6) ergs/g, a steady state is reached between coagulation of small grains and collisional disruption of larger aggregates. Formation of macroscopic aggregates requires high mechanical strengths and low aggregate densities. We assume sonic turbulence during collapse, with varied eddy size scales determining the dissipation rate or turbulence strength. The degree of collisional evolution during collapse is sensitive to the assumed small-scale structure (inner sc ale) of the turbulence. Weak turbulence results in few collisions and preserves the precollapse particle size distribution with little change. Strong turbulence tends to produce net destruction, rather than particle growth, during infall, unless inpact strengths are greater than 10(exp 6)ergs/g.

  7. Modeling of surface cleaning by cavitation bubble dynamics and collapse.

    PubMed

    Chahine, Georges L; Kapahi, Anil; Choi, Jin-Keun; Hsiao, Chao-Tsung

    2016-03-01

    Surface cleaning using cavitation bubble dynamics is investigated numerically through modeling of bubble dynamics, dirt particle motion, and fluid material interaction. Three fluid dynamics models; a potential flow model, a viscous model, and a compressible model, are used to describe the flow field generated by the bubble all showing the strong effects bubble explosive growth and collapse have on a dirt particle and on a layer of material to remove. Bubble deformation and reentrant jet formation are seen to be responsible for generating concentrated pressures, shear, and lift forces on the dirt particle and high impulsive loads on a layer of material to remove. Bubble explosive growth is also an important mechanism for removal of dirt particles, since strong suction forces in addition to shear are generated around the explosively growing bubble and can exert strong forces lifting the particles from the surface to clean and sucking them toward the bubble. To model material failure and removal, a finite element structure code is used and enables simulation of full fluid-structure interaction and investigation of the effects of various parameters. High impulsive pressures are generated during bubble collapse due to the impact of the bubble reentrant jet on the material surface and the subsequent collapse of the resulting toroidal bubble. Pits and material removal develop on the material surface when the impulsive pressure is large enough to result in high equivalent stresses exceeding the material yield stress or its ultimate strain. Cleaning depends on parameters such as the relative size between the bubble at its maximum volume and the particle size, the bubble standoff distance from the particle and from the material wall, and the excitation pressure field driving the bubble dynamics. These effects are discussed in this contribution.

  8. Gravitational collapse of Hagedorn fluids

    NASA Astrophysics Data System (ADS)

    Malafarina, Daniele

    2016-05-01

    We consider a toy model for the relativistic collapse of a homogeneous perfect fluid that takes into account an equation of state for high density matter, in the form of a Hagedorn phase, and semiclassical corrections in the strong field. We show that collapse reaches a critical minimum size and then bounces. We discuss the conditions needed for the collapse to halt and form a compact object. We argue that implications of models such as the one presented here are of great importance for astrophysics as they show that black holes may not be the only final outcome of collapse of very massive stars.

  9. Magnetized Tolman-Bondi collapse

    NASA Astrophysics Data System (ADS)

    Germani, Cristiano; Tsagas, Christos G.

    2006-03-01

    We investigate the gravitational implosion of magnetized matter by studying the inhomogeneous collapse of a weakly magnetized Tolman-Bondi spacetime. The role of the field is analyzed by looking at the convergence of neighboring particle world lines. In particular, we identify the magnetically related stresses in the Raychaudhuri equation and use the Tolman-Bondi metric to evaluate their impact on the collapsing dust. We find that, despite the low energy level of the field, the Lorentz force dominates the advanced stages of the collapse, leading to a strongly anisotropic contraction. In addition, of all the magnetic stresses, those that resist the collapse are found to grow faster.

  10. The Direct Collapse of Supermassive Black Hole Seeds

    NASA Astrophysics Data System (ADS)

    Regan, John A.; Johansson, Peter H.; Wise, John H.

    2016-10-01

    The direct collapse model of supermassive black hole seed formation requires that thegas cools predominantly via atomic hydrogen. To this end we simulate the effect of ananisotropic radiation source on the collapse of a halo at high redshift. The radiationsource is placed at a distance of 3 kpc (physical) from the collapsing object and is setto emit monochromatically in the center of the Lyman-Werner (LW) band. The LW radiationemitted from the high redshift source is followed self-consistently using ray tracingtechniques. Due to self-shielding, a small amount of H2 is able to form at the verycenter of the collapsing halo even under very strong LW radiation. Furthermore, we find thata radiation source, emitting < 1054 (~103 J21) photons per second isrequired to cause the collapse of a clump of M ~ 105 M⊙. The resultingaccretion rate onto the collapsing object is ~ 0.25 M⊙ yr-1.Our results display significant differences, compared to the isotropic radiation field case,in terms of H2 fraction at an equivalent radius. These differences will significantly effectthe dynamics of the collapse. With the inclusion of a strong anisotropic radiation source, thefinal mass of the collapsing object is found to be M ~ 105 M⊙. This is consistentwith predictions for the formation of a supermassive star or quasi-star leading to asupermassive black hole.

  11. Structural Modeling and Molecular Dynamics Simulation of the Actin Filament

    SciTech Connect

    Splettstoesser, Thomas; Holmes, Kenneth; Noe, Frank; Smith, Jeremy C

    2011-01-01

    Actin is a major structural protein of the eukaryotic cytoskeleton and enables cell motility. Here, we present a model of the actin filament (F-actin) that not only incorporates the global structure of the recently published model by Oda et al. but also conserves internal stereochemistry. A comparison is made using molecular dynamics simulation of the model with other recent F-actin models. A number of structural determents such as the protomer propeller angle, the number of hydrogen bonds, and the structural variation among the protomers are analyzed. The MD comparison is found to reflect the evolution in quality of actin models over the last 6 years. In addition, simulations of the model are carried out in states with both ADP or ATP bound and local hydrogen-bonding differences characterized.

  12. Shock wave induced damage of a protein by void collapse

    DOE PAGES

    Lau, Edmond Y.; Berkowitz, Max L.; Schwegler, Eric R.

    2016-01-05

    In this study, we report on a series of molecular dynamics simulations that were used to examine the effects of shockwaves on a membrane bound ion channel. A planar shockwave was found to compress the ion channel upon impact but the protein geometry resembles the initial structure as soon as the solvent density begins to dissipate. When a void was placed in close proximity to the membrane, the shockwave proved to be much more destructive to the protein due to formation of a nanojet that results from the asymmetric collapse of the void. The nanojet was able to cause significantmore » structural changes to the protein even at low particle velocities that are not able to directly cause poration of the membrane.« less

  13. Studies on the lipase-induced degradation of lipid-based drug delivery systems. Part II - Investigations on the mechanisms leading to collapse of the lipid structure.

    PubMed

    Schwab, Martin; McGoverin, Cushla M; Gordon, Keith C; Winter, Gerhard; Rades, Thomas; Myschik, Julia; Strachan, Clare J

    2013-08-01

    It has recently been found that lipid composition appears to have a major influence on the rate of lipase-induced degradation of lipid-based extended release drug delivery systems (microparticles, compressed implants and extrudated implants). Previously, we have found that during lipase incubation, depending on the lipid used, lipidic extrudates can lose their physical strength and collapse generating lipid particles in the μm-range. The aim of this study was to characterise the processes leading to collapse of solid lipid-based drug delivery systems during in vitro lipase incubation. Compressed lipid implants were used as model systems. Free fatty acids (FFA) generated in the incubation experiments were derivatised and subsequently analysed via reversed phase-HPLC in order to characterise the degradation behaviour of single lipid components (glyceryltrilaurate (D112), glyceryltrimyristate (D114), glyceryltripalmitate (D116) and glyceryltristearate (D118)) used for the preparation of compressed lipid implants. Further, Raman spectroscopy/microscopy, differential scanning calorimetry, scanning electron and light microscopy were used to investigate the physical and chemical changes in the implants upon lipase incubation. This study revealed that the lipid component D112 plays a major role in the degradation and erosion processes occurring during lipase incubation of lipid implants. The production of D112/lauric acid mixtures, with a melting point below human body temperature, leads to lipid matrices melting and losing their physical integrity.

  14. Structure of overheated metal clusters: MD simulation study

    SciTech Connect

    Vorontsov, Alexander

    2015-08-17

    The structure of overheated metal clusters appeared in condensation process was studied by computer simulation techniques. It was found that clusters with size larger than several tens of atoms have three layers: core part, intermediate dense packing layer and a gas- like shell with low density. The change of the size and structure of these layers with the variation of internal energy and the size of cluster is discussed.

  15. Information diversity in structure and dynamics of simulated neuronal networks.

    PubMed

    Mäki-Marttunen, Tuomo; Aćimović, Jugoslava; Nykter, Matti; Kesseli, Juha; Ruohonen, Keijo; Yli-Harja, Olli; Linne, Marja-Leena

    2011-01-01

    Neuronal networks exhibit a wide diversity of structures, which contributes to the diversity of the dynamics therein. The presented work applies an information theoretic framework to simultaneously analyze structure and dynamics in neuronal networks. Information diversity within the structure and dynamics of a neuronal network is studied using the normalized compression distance. To describe the structure, a scheme for generating distance-dependent networks with identical in-degree distribution but variable strength of dependence on distance is presented. The resulting network structure classes possess differing path length and clustering coefficient distributions. In parallel, comparable realistic neuronal networks are generated with NETMORPH simulator and similar analysis is done on them. To describe the dynamics, network spike trains are simulated using different network structures and their bursting behaviors are analyzed. For the simulation of the network activity the Izhikevich model of spiking neurons is used together with the Tsodyks model of dynamical synapses. We show that the structure of the simulated neuronal networks affects the spontaneous bursting activity when measured with bursting frequency and a set of intraburst measures: the more locally connected networks produce more and longer bursts than the more random networks. The information diversity of the structure of a network is greatest in the most locally connected networks, smallest in random networks, and somewhere in between in the networks between order and disorder. As for the dynamics, the most locally connected networks and some of the in-between networks produce the most complex intraburst spike trains. The same result also holds for sparser of the two considered network densities in the case of full spike trains.

  16. Numerical simulations of drop impact on superhydrophobic structured surfaces

    NASA Astrophysics Data System (ADS)

    Guzzetti, Davide; Larentis, Stefano; Pugno, Nicola

    2011-11-01

    During the last decade drop impact dynamics on superhydrophobic surfaces has been intensively investigated because of the incredible properties of water repellency exhibited by this kind of surfaces, mostly inspired by biological examples such as Lotus leave. Thanks to the recent progress in micro-fabrication technology is possible to tailor surfaces wettability defining specific pillar-like structured surfaces. In this work, the behavior of impinging drops on these pillar-like surfaces is simulated, characterizing temporal evolution of droplets contact radius and drop maximal deformation dependence on Weber number. Numerical simulations results are compared with theoretical and experimental results guaranteeing simulation reliability. Fingering patterns obtained from drop impact has been studied obtaining a correlation between number of fingers and Weber number. Drop fragmentation pattern obtained from simulations supports the proposed correlation. Different drop impact outcomes (e.g. rebound, fragmentation) on structured superhydrophobic surfaces are simulated, focusing on the influence of micro-structured surface geometrical pattern. This investigation is relevant in order to define design rules for possible reliable non wettable surfaces. Financial support by Alta Scuola Politecnica.

  17. Multiscale Simulations of the Structure and Dynamics of the Magnetopause

    NASA Astrophysics Data System (ADS)

    Berchem, Jean; Lapenta, Giovanni; Ashour-Abdalla, Maha

    2016-04-01

    Ongoing observations by the spacecraft of NASA's Magnetospheric Multiscale Mission are revealing a very complex structure and dynamics of the low-latitude magnetopause. One of the main difficulties to comprehend physical processes occurring at the magnetopause is that it requires following both the evolution of the large-scale interaction of the solar wind with the dayside magnetosphere, and the details of the kinetic processes that enable transport of energy and mass in localized regions of the magnetospheric boundary. To address this multiscale problem, we have carried out particle-in-cell (PIC) simulations of the dayside magnetopause. These simulations employ domains that are large enough to include large-scale features of the solar wind interaction with the geomagnetic field (e.g., field curvature and plasma asymmetries). The numerical challenge is dealt with by using the implicit iPic3d simulation code together with the results of global magnetohydrodynamic (MHD) simulations. We discuss the results of the PIC simulations in the context of the global MHD states that provide initial and boundary conditions, and local spacecraft observations at the magnetopause. In particular, we analyze the evolution of electromagnetic fields and particle distributions in different regions of the simulations to determine how reconnection processes affect the structure and dynamics of the magnetospheric boundary.

  18. Progressive collapse analysis using updated models for alternate path analysis after a blast

    NASA Astrophysics Data System (ADS)

    Eskew, Edward; Jang, Shinae; Bertolaccini, Kelly

    2016-04-01

    Progressive collapse is of rising importance within the structural engineering community due to several recent cases. The alternate path method is a design technique to determine the ability of a structure to sustain the loss of a critical element, or elements, and still resist progressive collapse. However, the alternate path method only considers the removal of the critical elements. In the event of a blast, significant damage may occur to nearby members not included in the alternate path design scenarios. To achieve an accurate assessment of the current condition of the structure after a blast or other extreme event, it may be necessary to reduce the strength or remove additional elements beyond the critical members designated in the alternate path design method. In this paper, a rapid model updating technique utilizing vibration measurements is used to update the structural model to represent the real-time condition of the structure after a blast occurs. Based upon the updated model, damaged elements will either have their strength reduced, or will be removed from the simulation. The alternate path analysis will then be performed, but only utilizing the updated structural model instead of numerous scenarios. After the analysis, the simulated response from the analysis will be compared to failure conditions to determine the buildings post-event condition. This method has the ability to incorporate damage to noncritical members into the analysis. This paper will utilize numerical simulations based upon a unified facilities criteria (UFC) example structure subjected to an equivalent blast to validate the methodology.

  19. The Nimitz Freeway Collapse

    NASA Astrophysics Data System (ADS)

    Feldman, Bernard J.

    2004-10-01

    One of the most tragic sights created by the Loma Prieta earthquake of Oct. 17, 1989, was the collapse of the double-deck Nimitz Freeway (the Cypress Street Viaduct on Interstate 880) just south and east of the San Francisco-Oakland Bay Bridge in Oakland. Along a 1.4-km north-south stretch, the upper deck of the freeway fell on top of the lower deck of the freeway, killing 42 motorists (see Fig. 1). Even though the earthquake occurred during rush hour (5:04 p.m.), traffic was extremely light that day because the third game of the World Series between the Oakland Athletics and the San Francisco Giants was about to begin and many commuters were already at home in front of their television sets.

  20. Assessing inflow rates in atomic cooling haloes: implications for direct collapse black holes

    NASA Astrophysics Data System (ADS)

    Latif, M. A.; Volonteri, M.

    2015-09-01

    Supermassive black holes are not only common in the present-day galaxies, but billion solar masses black holes also powered z ≥ 6 quasars. One efficient way to form such black holes is the collapse of a massive primordial gas cloud into a so-called direct collapse black hole. The main requirement for this scenario is the presence of large accretion rates of ≥ 0.1 M⊙ yr- 1 to form a supermassive star. It is not yet clear how and under what conditions such accretion rates can be obtained. The prime aim of this work is to determine the mass accretion rates under non-isothermal collapse conditions. We perform high-resolution cosmological simulations for three primordial haloes of a few times 107 M⊙ illuminated by an external UV flux, J21 = 100-1000. We find that a rotationally supported structure of about parsec size is assembled, with an aspect ratio between 0.25 and 1 depending upon the thermodynamical properties. Rotational support, however, does not halt collapse, and mass inflow rates of ˜ 0.1 M⊙ yr- 1 can be obtained in the presence of even a moderate UV background flux of strength J21 ≥ 100. To assess whether such large accretion rates can be maintained over longer time-scales, we employed sink particles, confirming the persistence of accretion rates of ˜ 0.1 M⊙ yr- 1. We propose that complete isothermal collapse and molecular hydrogen suppression may not always be necessary to form supermassive stars, precursors of black hole seeds. Sufficiently high inflow rates can be obtained for UV flux J21 = 500-1000, at least for some cases. This value brings the estimate of the abundance of direct collapse black hole seeds closer to that high-redshift quasars.

  1. Deep-collapse operation of capacitive micromachined ultrasonic transducers.

    PubMed

    Olcum, Selim; Yamaner, F Yalcin; Bozkurt, Ayhan; Atalar, Abdullah

    2011-11-01

    Capacitive micromachined ultrasonic transducers (CMUTs) have been introduced as a promising technology for ultrasound imaging and therapeutic ultrasound applications which require high transmitted pressures for increased penetration, high signal-to-noise ratio, and fast heating. However, output power limitation of CMUTs compared with piezoelectrics has been a major drawback. In this work, we show that the output pressure of CMUTs can be significantly increased by deep-collapse operation, which utilizes an electrical pulse excitation much higher than the collapse voltage. We extend the analyses made for CMUTs working in the conventional (uncollapsed) region to the collapsed region and experimentally verify the findings. The static deflection profile of a collapsed membrane is calculated by an analytical approach within 0.6% error when compared with static, electromechanical finite element method (FEM) simulations. The electrical and mechanical restoring forces acting on a collapsed membrane are calculated. It is demonstrated that the stored mechanical energy and the electrical energy increase nonlinearly with increasing pulse amplitude if the membrane has a full-coverage top electrode. Utilizing higher restoring and electrical forces in the deep-collapsed region, we measure 3.5 MPa peak-to-peak pressure centered at 6.8 MHz with a 106% fractional bandwidth at the surface of the transducer with a collapse voltage of 35 V, when the pulse amplitude is 160 V. The experimental results are verified using transient FEM simulations.

  2. Global MHD Simulation of Mesoscale Structures at the Magnetospheric Boundary

    NASA Technical Reports Server (NTRS)

    Berchem, Jean

    1998-01-01

    The research carried out for this protocol was focused on the study of mesoscales structures at the magnetospheric boundary. We investigated three areas: (1) the structure of the magnetospheric boundary for steady solar wind conditions; (2) the dynamics of the dayside magnetospheric boundary and (3) the dynamics of the distant tail magnetospheric boundary. Our approach was to use high resolution three-dimensional global magnetohydrodynamic (MHD) simulations of the interaction of the solar wind with the Earth's magnetosphere. We first considered simple variations of the interplanetary conditions to obtain generic cases that helped us in establishing the basic cause and effect relationships for steady solar wind conditions. Subsequently, we used actual solar wind plasma and magnetic field parameters measured by an upstream spacecraft as input to the simulations and compared the simulation results with sequences of events observed by another or several other spacecraft located downstream the bow shock. In particular we compared results with observations made when spacecraft crossed the magnetospheric boundary.

  3. A performance comparison of integration algorithms in simulating flexible structures

    NASA Technical Reports Server (NTRS)

    Howe, R. M.

    1989-01-01

    Asymptotic formulas for the characteristic root errors as well as transfer function gain and phase errors are presented for a number of traditional and new integration methods. Normalized stability regions in the lambda h plane are compared for the various methods. In particular, it is shown that a modified form of Euler integration with root matching is an especially efficient method for simulating lightly-damped structural modes. The method has been used successfully for structural bending modes in the real-time simulation of missiles. Performance of this algorithm is compared with other special algorithms, including the state-transition method. A predictor-corrector version of the modified Euler algorithm permits it to be extended to the simulation of nonlinear models of the type likely to be obtained when using the discretized structure approach. Performance of the different integration methods is also compared for integration step sizes larger than those for which the asymptotic formulas are valid. It is concluded that many traditional integration methods, such as RD-4, are not competitive in the simulation of lightly damped structures.

  4. Structural materials from lunar simulants through thermal liquefaction

    NASA Technical Reports Server (NTRS)

    Desai, Chandra S.; Girdner, Kirsten

    1992-01-01

    Thermal liquefaction that allows development of intermediate ceramic composites from a lunar simulant with various admixtures is used to develop structural materials for construction on the moon. Bending and compressive properties of resulting composites are obtained from laboratory tests and evaluated with respect to the use of three different types and fibers.

  5. Numerical simulations of the subsurface structure of sunspots

    NASA Astrophysics Data System (ADS)

    Rempel, M.; Cheung, M.; Birch, A. C.; Braun, D. C.

    2011-12-01

    Knowledge of the subsurface magnetic field and flow structure of sunspots is essential for understanding the processes involved in their formation, dynamic evolution and decay. Information on the subsurface structure can be obtained by either direct numerical modeling or helioseismic inversions. Numerical simulations have reached only in recent years the point at which entire sunspots or even active regions can be modeled including all relevant physical processes such as 3D radiative transfer and a realistic equation of state. We present in this talk results from a series of different models: from simulations of individual sunspots (with and without penumbrae) in differently sized computational domains to simulations of the active region formation process (flux emergence). It is found in all models that the subsurface magnetic field fragments on an intermediate scale (larger than the scale of sunspot fine structure such as umbral dots); most of these fragmentations become visible as light bridges or flux separation events in the photosphere. The subsurface field strength is found to be in the 5-10 kG range. The simulated sunspots are surrounded by large scale flows, the most dominant and robust flow component is a deep reaching outflow with an amplitude reaching about 50% of the convective RMS velocity at the respective depth. The simulated sunspots show helioseismic signatures (frequency dependent travel time shifts) similar to those in observed sunspots. On the other hand it is clear from the simulations that these signatures originate in the upper most 2-3 Mm of the convection zone, since only there substantial perturbations of the wave speed are present. The contributions from deeper layers are insignificant, in particular a direct comparison between an 8 Mm and 16 Mm deep simulation leads to indiscernible helioseismic differences. The National Center for Atmospheric Research is sponsored by the National Science Foundation. This work is in part supported

  6. Modeling electrostatically induced collapse transitions in carbon nanotubes.

    PubMed

    Shklyaev, Oleg E; Mockensturm, Eric; Crespi, Vincent H

    2011-04-15

    Molecular dynamics simulations demonstrate how a mechanically bistable single-walled carbon nanotube can act as a variable-shaped capacitor. If the voltage is tuned so that collapsed and inflated states are degenerate, the tube's susceptibility to diverse external stimuli--temperature, voltage, trapped atoms--diverges following a universal curve, yielding an exceptionally sensitive sensor or actuator. The boundary between collapsed and inflated states can shift hundreds of angstroms in response to a single gas atom inside the tube. Several potential nanoelectromechanical devices could be based on this electrically tuned crossover between near-degenerate collapsed and inflated configurations.

  7. Simulating the large-scale structure of HI intensity maps

    NASA Astrophysics Data System (ADS)

    Seehars, Sebastian; Paranjape, Aseem; Witzemann, Amadeus; Refregier, Alexandre; Amara, Adam; Akeret, Joel

    2016-03-01

    Intensity mapping of neutral hydrogen (HI) is a promising observational probe of cosmology and large-scale structure. We present wide field simulations of HI intensity maps based on N-body simulations of a 2.6 Gpc / h box with 20483 particles (particle mass 1.6 × 1011 Msolar / h). Using a conditional mass function to populate the simulated dark matter density field with halos below the mass resolution of the simulation (108 Msolar / h < Mhalo < 1013 Msolar / h), we assign HI to those halos according to a phenomenological halo to HI mass relation. The simulations span a redshift range of 0.35 lesssim z lesssim 0.9 in redshift bins of width Δ z ≈ 0.05 and cover a quarter of the sky at an angular resolution of about 7'. We use the simulated intensity maps to study the impact of non-linear effects and redshift space distortions on the angular clustering of HI. Focusing on the autocorrelations of the maps, we apply and compare several estimators for the angular power spectrum and its covariance. We verify that these estimators agree with analytic predictions on large scales and study the validity of approximations based on Gaussian random fields, particularly in the context of the covariance. We discuss how our results and the simulated maps can be useful for planning and interpreting future HI intensity mapping surveys.

  8. 31. VIEW OF COLLAPSED APRON OF BRIDGE NO. 10 AND ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    31. VIEW OF COLLAPSED APRON OF BRIDGE NO. 10 AND ELEMENTS OF SUSPENSION STRUCTURE. LOOKING SOUTH. - Greenville Yard, Transfer Bridge System, Port of New York/New Jersey, Upper New York Bay, Jersey City, Hudson County, NJ

  9. Finite element simulation of adaptive aerospace structures with SMA actuators

    NASA Astrophysics Data System (ADS)

    Frautschi, Jason; Seelecke, Stefan

    2003-07-01

    The particular demands of aerospace engineering have spawned many of the developments in the field of adaptive structures. Shape memory alloys are particularly attractive as actuators in these types of structures due to their large strains, high specific work output and potential for structural integration. However, the requisite extensive physical testing has slowed development of potential applications and highlighted the need for a simulation tool for feasibility studies. In this paper we present an implementation of an extended version of the M'ller-Achenbach SMA model into a commercial finite element code suitable for such studies. Interaction between the SMA model and the solution algorithm for the global FE equations is thoroughly investigated with respect to the effect of tolerances and time step size on convergence, computational cost and accuracy. Finally, a simulation of a SMA-actuated flexible trailing edge of an aircraft wing modeled with beam elements is presented.

  10. Towards the Core-Collapse Supernova Explosion Mechanism

    SciTech Connect

    Cardall, Christian Y; Endeve, Eirik; Budiardja, R. D.; Marronetti, Pedro; Mezzacappa, Anthony

    2012-01-01

    Core-collapse supernovae are amazing displays of astrohysical fireworks - and the optical emission is only a tiny part of the story. These events involve virtually all branches of physics and spawn phenomena observale by every kind of astronomical observation. This richness of theory and observation presents a formidable challenge to their understanding via computer simulations, but we are entering a new era of realism and maturity in modeling the key processes by collapse and explosion.

  11. Three-dimensional strong Langmuir turbulence and wave collapse

    NASA Technical Reports Server (NTRS)

    Robinson, P. A.; Newman, D. L.; Goldman, M. V.

    1988-01-01

    Results from the first fully three-dimensional simulations of driven damped strong Langmuir turbulence and wave collapse are presented. Key results are that turbulence is maintained at least in part by nucleation, the cores of most collapsing objects are pancake shaped in form, and the power spectrum falls off approximately as the product of a power law and an exponential at large wave number.

  12. Structure of entangled polymer network from primitive chain network simulations

    NASA Astrophysics Data System (ADS)

    Masubuchi, Yuichi; Uneyama, Takashi; Watanabe, Hiroshi; Ianniruberto, Giovanni; Greco, Francesco; Marrucci, Giuseppe

    2010-04-01

    The primitive chain network (PCN) model successfully employed to simulate the rheology of entangled polymers is here tested versus less coarse-grained (lattice or atomistic) models for what concerns the structure of the network at equilibrium (i.e., in the absence of flow). By network structure, we mean the distributions of some relevant quantities such as subchain length in space or in monomer number. Indeed, lattice and atomistic simulations are obviously more accurate, but are also more difficult to use in nonequilibrium flow situations, especially for long entangled polymers. Conversely, the coarse-grained PCN model that deals more easily with rheology lacks, strictly speaking, a rigorous foundation. It is therefore important to verify whether or not the equilibrium structure of the network predicted by the PCN model is consistent with the results recently obtained by using lattice and atomistic simulations. In this work, we focus on single chain properties of the entangled network. Considering the significant differences in modeling the polymer molecules, the results here obtained appear encouraging, thus providing a more solid foundation to Brownian simulations based on the PCN model. Comparison with the existing theories also proves favorable.

  13. Simulation of the photogrammetric appendage structural dynamics experiment

    NASA Technical Reports Server (NTRS)

    Pappa, Richard S.; Gilbert, Michael G.; Welch, Sharon S.

    1995-01-01

    The Photogrammetric Appendage Structural Dynamics Experiment (PASDE) uses six video cameras in the Space Shuttle cargo bay to measure vibration of the Russian Mir space station Kvant-ll solar array. It occurs on Shuttle/Mir docking mission STS-74 scheduled for launch in November 1995. The objective of PASDE is to demonstrate photogrammetric technology for measuring 'untargeted' spacecraft appendage structural dynamics. This paper discusses a pre-flight simulation test conducted in July 1995, focusing on the image processing aspects. The flight camera system recorded vibrations of a full-scale structural test article having grids of white lines on black background, similar in appearance to the Mir solar array. Using image correlation analysis, line intersections on the structure are tracked in the video recordings to resolutions of less than 0.1 pixel. Calibration and merging of multiple camera views generated 3-dimensional displacements from which structural modal parameters are then obtained.

  14. Research of TREETOPS Structural Dynamics Controls Simulation Upgrade

    NASA Technical Reports Server (NTRS)

    Yates, Rose M.

    1996-01-01

    Under the provisions of contract number NAS8-40194, which was entitled 'TREETOPS Structural Dynamics and Controls Simulation System Upgrade', Oakwood College contracted to produce an upgrade to the existing TREETOPS suite of analysis tools. This suite includes the main simulation program, TREETOPS, two interactive preprocessors, TREESET and TREEFLX, an interactive post processor, TREEPLOT, and an adjunct program, TREESEL. A 'Software Design Document', which provides descriptions of the argument lists and internal variables for each subroutine in the TREETOPS suite, was established. Additionally, installation guides for both DOS and UNIX platforms were developed. Finally, updated User's Manuals, as well as a Theory Manual, were generated.

  15. Modeling of Large Avionic Structures in Electrical Network Simulations

    NASA Astrophysics Data System (ADS)

    Piche, A.; Perraud, R.; Lochot, C.

    2012-05-01

    The extensive introduction of carbon fiber reinforced plastics (CFRP) in conjunction with an increase of electrical systems in aircraft has led to new electromagnetic issues. This situation has reinforced the need for numerical simulation early in the design phase. In this context, we have proposed [1] a numerical methodology to deal with 3D CFRP avionic structures in time domain simulations at system level. This paper presents the last results on this subject and particularly the modeling of A350 fuselage in SABER computation containing the aircraft power distribution.

  16. Simulation of blast action on civil structures using ANSYS Autodyn

    NASA Astrophysics Data System (ADS)

    Fedorova, N. N.; Valger, S. A.; Fedorov, A. V.

    2016-10-01

    The paper presents the results of 3D numerical simulations of shock wave spreading in cityscape area. ANSYS Autodyne software is used for the computations. Different test cases are investigated numerically. On the basis of the computations, the complex transient flowfield structure formed in the vicinity of prismatic bodies was obtained and analyzed. The simulation results have been compared to the experimental data. The ability of two numerical schemes is studied to correctly predict the pressure history in several gauges placed on walls of the obstacles.

  17. Simulations of the formation of large-scale structure

    NASA Astrophysics Data System (ADS)

    White, S. D. M.

    Numerical studies related to the simulation of structure growth are examined. The linear development of fluctuations in the early universe is studied. The research of Aarseth, Gott, and Turner (1979) based on N-body integrators that obtained particle accelerations by direct summation of the forces due to other objects is discussed. Consideration is given to the 'pancake theory' of Zel'dovich (1970) for the evolution from adiabatic initial fluctuation, the neutrino-dominated universe models of White, Frenk, and Davis (1983), and the simulations of Davis et al. (1985).

  18. Nanostructured water and carbon dioxide inside collapsing carbon nanotubes at high pressure.

    PubMed

    Cui, Wenwen; Cerqueira, Tiago F T; Botti, Silvana; Marques, Miguel A L; San-Miguel, Alfonso

    2016-07-20

    We present simulations of the collapse under hydrostatic pressure of carbon nanotubes containing either water or carbon dioxide. We show that the molecules inside the tube alter the dynamics of the collapse process, providing either mechanical support and increasing the collapse pressure, or reducing mechanical stability. At the same time the nanotube acts as a nanoanvil, and the confinement leads to the nanostructuring of the molecules inside the collapsed tube. In this way, depending on the pressure and on the concentration of water or carbon dioxide inside the nanotube, we observe the formation of 1D molecular chains, 2D nanoribbons, and even molecular single and multi-walled nanotubes. The structure of the encapsulated molecules correlates with the mechanical response of the nanotube, opening up opportunities for the development of new devices or composite materials. Our analysis is quite general and it can be extended to other molecules in carbon nanotube nanoanvils, providing a strategy to obtain a variety of nano-objects with controlled features. PMID:27400409

  19. Simulation of Aircraft Engine Blade-Out Structural Dynamics

    NASA Technical Reports Server (NTRS)

    Lawrence, Charles; Carney, Kelly; Gallardo, Vicente

    2001-01-01

    A primary concern of aircraft structure designers is the accurate simulation of the blade-out event and the subsequent windmilling of the engine. Reliable simulations of the blade-out event are required to insure structural integrity during flight as well as to guarantee successful blade-out certification testing. The system simulation includes the lost blade loadings and the interactions between the rotating turbomachinery and the remaining aircraft structural components. General-purpose finite element structural analysis codes such as MSC NASTRAN are typically used and special provisions are made to include transient effects from the blade loss and rotational effects resulting from the engine's turbomachinery. The present study provides the equations of motion for rotordynamic response including the effect of spooldown speed and rotor unbalance and examines the effects of these terms on a cantilevered rotor. The effect of spooldown speed is found to be greater with increasing spooldown rate. The parametric term resulting from the mass unbalance has a more significant effect on the rotordynamic response than does the spooldown term. The parametric term affects both the peak amplitudes as well as the resonant frequencies of the rotor.

  20. Simulation of Aircraft Engine Blade-Out Structural Dynamics. Revised

    NASA Technical Reports Server (NTRS)

    Lawrence, Charles; Carney, Kelly; Gallardo, Vicente

    2001-01-01

    A primary concern of aircraft structure designers is the accurate simulation of the blade-out event and the subsequent windmilling of the engine. Reliable simulations of the blade-out event are required to insure structural integrity during flight as well as to guarantee successful blade-out certification testing. The system simulation includes the lost blade loadings and the interactions between the rotating turbomachinery and the remaining aircraft structural components. General-purpose finite element structural analysis codes such as MSC NASTRAN are typically used and special provisions are made to include transient effects from the blade loss and rotational effects resulting from the engine's turbomachinery. The present study provides the equations of motion for rotordynamic response including the effect of spooldown speed and rotor unbalance and examines the effects of these terms on a cantilevered rotor. The effect of spooldown speed is found to be greater with increasing spooldown rate. The parametric term resulting from the mass unbalance has a more significant effect on the rotordynamic response than does the spooldown term. The parametric term affects both the peak amplitudes as well as the resonant frequencies of the rotor.

  1. Discrete element simulations of gravitational volcanic deformation. 1; Deformation structures and geometries

    NASA Technical Reports Server (NTRS)

    Morgan, Julia K.; McGovern, Patrick J.

    2005-01-01

    We have carried out two-dimensional particle dynamics simulations of granular piles subject to frictional Coulomb failure criteria to gain a first-order understanding of different modes of gravitational deformation within volcanoes. Under uniform basal and internal strength conditions, granular piles grow self-similarly, developing distinctive stratigraphies, morphologies, and structures. Piles constructed upon cohesive substrates exhibit particle avalanching, forming outward dipping strata and angle of repose slopes. Systematic decreases in basal strength lead to progressively deeper and steeper internal detachment faults and slip along a basal decollement; landslide forms grade from shallow slumps to deep-seated landslide and, finally, to axial subsidence and outward flank displacements, or volcanic spreading. Surface slopes decrease and develop concave up morphologies with decreasing decollement strength; depositional layers tilt progressively inward. Spatial variations in basal strength cause lateral transitions in pile structure, stratigraphy, and morphology. This approximation of volcanoes as Coulomb granular piles reproduces the richness of deformational structures and surface morphologies in many volcanic settings. The gentle slopes of Hawaiian volcanoes and Olympus Mons on Mars suggest weak basal decollements that enable volcanic spreading. High-angle normal faults, favored above weak decollements, are interpreted in both settings and may explain catastrophic sector collapse in Hawaii and broad aureole deposits surrounding Olympus Mons. In contrast, steeper slopes and shallow detachment faults predominate in the Canary Islands, thought to lack a weak decollement, favoring smaller, more frequent slope failures than predicted for Hawaii. The numerical results provide a useful predictive tool for interpreting dynamic behavior and associated geologic hazards of active volcanoes.

  2. Ground and excited states Gamow-Teller strength distributions of iron isotopes and associated capture rates for core-collapse simulations

    NASA Astrophysics Data System (ADS)

    Nabi, Jameel-Un

    2011-02-01

    This paper reports on the microscopic calculation of ground and excited states Gamow-Teller (GT) strength distributions, both in the electron capture and electron decay direction, for 54,55,56Fe. The associated electron and positron capture rates for these isotopes of iron are also calculated in stellar matter. These calculations were recently introduced and this paper is a follow-up which discusses in detail the GT strength distributions and stellar capture rates of key iron isotopes. The calculations are performed within the framework of the proton-neutron quasiparticle random phase approximation (pn-QRPA) theory. The pn-QRPA theory allows a microscopic state-by-state calculation of GT strength functions and stellar capture rates which greatly increases the reliability of the results. For the first time experimental deformation of nuclei are taken into account. In the core of massive stars isotopes of iron, 54,55,56Fe, are considered to be key players in decreasing the electron-to-baryon ratio ( Y e ) mainly via electron capture on these nuclide. The structure of the presupernova star is altered both by the changes in Y e and the entropy of the core material. Results are encouraging and are compared against measurements (where possible) and other calculations. The calculated electron capture rates are in overall good agreement with the shell model results. During the presupernova evolution of massive stars, from oxygen shell burning stages till around end of convective core silicon burning, the calculated electron capture rates on 54Fe are around three times bigger than the corresponding shell model rates. The calculated positron capture rates, however, are suppressed by two to five orders of magnitude.

  3. Supernova seismology: gravitational wave signatures of rapidly rotating core collapse

    NASA Astrophysics Data System (ADS)

    Fuller, Jim; Klion, Hannah; Abdikamalov, Ernazar; Ott, Christian D.

    2015-06-01

    Gravitational waves (GW) generated during a core-collapse supernova open a window into the heart of the explosion. At core bounce, progenitors with rapid core rotation rates exhibit a characteristic GW signal which can be used to constrain the properties of the core of the progenitor star. We investigate the dynamics of rapidly rotating core collapse, focusing on hydrodynamic waves generated by the core bounce, and the GW spectrum they produce. The centrifugal distortion of the rapidly rotating proto-neutron star (PNS) leads to the generation of axisymmetric quadrupolar oscillations within the PNS and surrounding envelope. Using linear perturbation theory, we estimate the frequencies, amplitudes, damping times, and GW spectra of the oscillations. Our analysis provides a qualitative explanation for several features of the GW spectrum and shows reasonable agreement with non-linear hydrodynamic simulations, although a few discrepancies due to non-linear/rotational effects are evident. The dominant early post-bounce GW signal is produced by the fundamental quadrupolar oscillation mode of the PNS, at a frequency 0.70 ≲ f ≲ 0.80 kHz, whose energy is largely trapped within the PNS and leaks out on a ˜10-ms time-scale. Quasi-radial oscillations are not trapped within the PNS and quickly propagate outwards until they steepen into shocks. Both the PNS structure and Coriolis/centrifugal forces have a strong impact on the GW spectrum, and a detection of the GW signal can therefore be used to constrain progenitor properties.

  4. Fluid Structure Interaction Simulations of Pediatric Ventricular Assist Device Operation

    NASA Astrophysics Data System (ADS)

    Long, Chris; Marsden, Alison; Bazilevs, Yuri

    2011-11-01

    Pediatric ventricular assist devices (PVADs) are used for mechanical circulatory support in children with failing hearts. They can be used to allow the heart to heal naturally or to extend the life of the patient until transplant. A PVAD has two chambers, blood and air, separated by a flexible membrane. The air chamber is pressurized, which drives the membrane and pumps the blood. The primary risk associated with these devices is stroke or embolism from thrombogenesis. Simulation of these devices is difficult due to a complex coupling of two fluid domains and a thin membrane, requiring fluid-structure interaction modeling. The goal of this work is to accurately simulate the hemodynamics of a PVAD. We perform FSI simulations using an Arbitrary Lagrangian-Eulerian (ALE) finite element framework to account for large motions of the membrane and the fluid domains. The air, blood, and membrane are meshed as distinct subdomains, and a method for non-matched discretizations at the fluid-structure interface is presented. The use of isogeometric analysis to model the membrane mechanics is also discussed, and the results of simulations are presented.

  5. The influence of coupled horizontal-vertical ground excitations on the collapse margins of modern RC-MRFs

    NASA Astrophysics Data System (ADS)

    Farsangi, Ehsan Noroozinejad; Tasnimi, Abbas Ali

    2016-06-01

    With the increasing interest in vertical ground motions, the focus of this study is to investigate the effect of concurrent horizontal-vertical excitations on the seismic response and collapse fragilities of RC buildings designed according to modern seismic codes and located near active faults. It must be stressed that only mid- to high-rise buildings are of significant concern in the context of this research. The considered structures are categorized as intermediate and special RC-MRFs and have been remodeled using distributed and lumped plasticity computational approaches in nonlinear simulation platforms, so that the utilized NL models can simulate all possible modes of deterioration. For better comparison, not only was the combined vertical and horizontal motion applied, but also a single horizontal component was considered for direct evaluation of the effect of the vertical ground motions (VGMs). At the member level, axial force variation and shear failure as the most critical brittle failure mechanisms were studied, while on the global level, adjusted collapse margin ratios (ACMRs) and mean annual frequency of collapse ( λ Collapse) using a new vector-valued intensity measure were investigated. Findings from the study indicate that VGMs have significant effects on both local and global structural performance and cannot be neglected.

  6. Structure identification methods for atomistic simulations of crystalline materials

    DOE PAGES

    Stukowski, Alexander

    2012-05-28

    Here, we discuss existing and new computational analysis techniques to classify local atomic arrangements in large-scale atomistic computer simulations of crystalline solids. This article includes a performance comparison of typical analysis algorithms such as common neighbor analysis (CNA), centrosymmetry analysis, bond angle analysis, bond order analysis and Voronoi analysis. In addition we propose a simple extension to the CNA method that makes it suitable for multi-phase systems. Finally, we introduce a new structure identification algorithm, the neighbor distance analysis, which is designed to identify atomic structure units in grain boundaries.

  7. Tracking Non-rigid Structures in Computer Simulations

    SciTech Connect

    Gezahegne, A; Kamath, C

    2008-01-10

    A key challenge in tracking moving objects is the correspondence problem, that is, the correct propagation of object labels from one time step to another. This is especially true when the objects are non-rigid structures, changing shape, and merging and splitting over time. In this work, we describe a general approach to tracking thousands of non-rigid structures in an image sequence. We show how we can minimize memory requirements and generate accurate results while working with only two frames of the sequence at a time. We demonstrate our results using data from computer simulations of a fluimix problem.

  8. Gravitational collapse of Vaidya spacetime

    NASA Astrophysics Data System (ADS)

    Vertogradov, Vitalii

    2016-03-01

    The gravitational collapse of generalized Vaidya spacetime is considered. It is known that the endstate of gravitational collapse, as to whether a black hole or a naked singularity is formed, depends on the mass function M(v,r). Here we give conditions for the mass function which corresponds to the equation of the state P = αρ where α ∈ (0, 1 3] and according to these conditions we obtain either a black hole or a naked singularity at the endstate of gravitational collapse. Also we give conditions for the mass function when the singularity is gravitationally strong.

  9. Simulation of optical breast density measurements using structured light illumination

    NASA Astrophysics Data System (ADS)

    Kwong, Jessica; Nouizi, Farouk; Li, Yifan; Chen, Jeon-Hor; Su, Min-Ying; Gulsen, Gultekin

    2014-02-01

    Breast density is a risk factor for breast cancer and we propose using diffuse optical tomography with structured light illuminations (SLI) to quantify the percentage of the fibroglandular (dense) tissue within the breast. Segmentations of dense tissue from breast MRI cases were used to create a geometric model of the breast. COMSOL-generated Finite Element Method (FEM) meshes were used for simulating photon migration through the breast tissue and reconstructing the absorption maps. In these preliminary simulations, the absorption coefficients of the non-dense and dense tissue were assigned using literature values based on their concentrations of water, lipid, oxy- and deoxyhemoglobin as they are the main chromophores, or absorbers of light, within the breast. Synthetic SLI measurements were obtained using a FEMbased forward solver. During the simulation, 12 distinct patterns consisting of vertical stripes, horizontal stripes, and checkerboard patterns were used for illumination and detection. Using these simulated measurements, FEM-based inverse solvers were used to reconstruct the 3D absorption maps. In this study, the methods are applied to reconstruct the absorption maps for multiple wavelengths (780nm, 830nm, 900nm, 1000nm) using one case as an example. We are currently continuing these simulations with additional cases and reconstructing 3D concentration maps of the chromophores within the dense and non-dense breast tissue.

  10. Deployment Simulation Methods for Ultra-Lightweight Inflatable Structures

    NASA Technical Reports Server (NTRS)

    Wang, John T.; Johnson, Arthur R.

    2003-01-01

    Two dynamic inflation simulation methods are employed for modeling the deployment of folded thin-membrane tubes. The simulations are necessary because ground tests include gravity effects and may poorly represent deployment in space. The two simulation methods are referred to as the Control Volume (CV) method and the Arbitrary Lagrangian Eulerian (ALE) method. They are available in the LS-DYNA nonlinear dynamic finite element code. Both methods are suitable for modeling the interactions between the inflation gas and the thin-membrane tube structures. The CV method only considers the pressure induced by the inflation gas in the simulation, while the ALE method models the actual flow of the inflation gas. Thus, the transient fluid properties at any location within the tube can be predicted by the ALE method. Deployment simulations of three packaged tube models; namely coiled, Z-folded, and telescopically-folded configurations, are performed. Results predicted by both methods for the telescopically-folded configuration are correlated and computational efficiency issues are discussed.

  11. Structure and Properties of HELICAL CARBON NANOTUBES through MD Simulations

    NASA Astrophysics Data System (ADS)

    Dahiya, Akshay; Verma, Deepti; Gupta, Shakti S.

    Helical Carbon Nanotubes (HCNTs) are coiled 3-valent carbon networks which represent pure carbon helix. Here we study the geometries of two classes: hexagonal helix containing purely polyhex networks and the second class with 5-and 7-membered rings besides hexagons. We followed a model of hexagonal, single wall HCNTs, and determined their relaxed configuration using MD simulations based on Tersoff potential. A race-track like structure is observed in the cross-section of HCNTs upon minimization. For generating class two helix, the adjacency matrix eigenvector's (AME) method is applied which utilizes 3-coordinated tiling of the plane by 5-,6-,and 7-membered ring for the construction of helical structures. The application of the AME method to torusenes is crucial for class two helix generation as it is based on an appropriate choice of bi-lobial eigenvectors triplet which can be selected on the basis of their nodal properties as verified here. After 3-D transformations the final structure was obtained with the help of MM3-potential based MD simulations on Tinker commercial code. The spring constants of HCNTs are computed through MD simulations.

  12. Coupled Eulerian/Lagrangian Simulation for Overpressure Structural Response

    NASA Astrophysics Data System (ADS)

    Lloyd, Andrew; Pan, Hua; Miller, David; Cogar, John

    2011-06-01

    Accurately modeling blast dynamics is critical in the assessment of structures subjected to blast loading. The current industry standard for modeling blast effects in Lagrangian based Finite Element simulations is CONWEP; tabulated pressure data taken directly from blast events. CONWEP is limited, however, and may not always be physically representative of the blast/structural interaction that occurs in the field. Eulerian hydrocodes provide advantages over CONWEP in that they can capture shock front interaction and model blast surface interfaces with fidelity due to the presence of the working fluid. Eulerian codes, however, break down over larger time scales; whereas, Lagrangian modeling allows for discrete finite elements with definable boundary interfaces that can be tracked out to longer time scales. Hence, a hybrid approach that couples the Eulerian blast modeling with Lagrangian system dynamics is necessary. The objective of this paper is to demonstrate improvements in overpressure structural response modeling using a Coupled Eulerian/Lagrangian algorithm implemented in VelodyneTM. Velodyne results using the Coupled Eulerian/Lagrangian algorithm are compared to results from Eulerian hydrocode simulations and Velodyne simulations using the CONWEP algorithm.

  13. Coupled Euler-La Grange simulation for overpressure structural response

    NASA Astrophysics Data System (ADS)

    Lloyd, Andrew N.; Miller, David K.; Pan, Hua; Cogar, John

    2012-03-01

    Accurately modeling blast dynamics is critical in the assessment of structures subjected to blast loading. The current industry standard for modeling blast effects in La Grange based finite element simulations is CONWEP; tabulated pressure data taken directly from blast events. CONWEP is limited, however, and may not always be physically representative of the blast/structural interaction that occurs in the field. Euler hydrocodes provide advantages over CONWEP in that they can capture shock front interaction and model blast surface interfaces with fidelity due to the presence of the working fluid. Euler codes, however, break down over larger time scales due to advection; whereas, Lagrange modeling allows for discrete finite elements with definable boundary interfaces that can be tracked out to longer time scales. Hence, a hybrid approach that couples the Euler blast modeling with La Grange system dynamics is necessary. The objective of this paper is to demonstrate improvements for high explosive overpressure structural response modeling specifically with respect COMP-B high explosive acting upon blasted fragments using a Coupled Euler-La Grange algorithm implemented in VelodyneTM. Velodyne results using the Coupled Euler-La Grange algorithm are compared to results from an Euler hydrocode simulation (CTH) and Velodyne simulations using the CONWEP algorithm.

  14. Crystal structure of double-collapsed-phase Bi6+xSr9-xFe5O26 and its relation to modulated-phase Bi2Sr2CaCu2O8+δ

    NASA Astrophysics Data System (ADS)

    Pérez, O.; Leligny, H.; Baldinozzi, G.; Grebille, D.; Hervieu, M.; Labbé, Ph.; Groult, D.; Graafsma, H.

    1997-09-01

    A structural analysis of the double-collapsed-phase Bi6+xSr9-xFe5O26 is presented in light of the modulated-phase Bi2.4Sr2.6Fe2O9+δ previously investigated [Y. Lepage, W. R. McKinnon, J. M. Tarascon, and P. Barboux, Phys. Rev. B 40, 6810 (1989); O. Pérez, H. Leligny, D. Grebille, J. M. Grene⁁che, Ph. Labbé, D. Groult, and B. Raveau, Phys. Rev. B 55, 1236 (1997)]. The study was carried out on a single crystal, using synchrotron radiation (λ=0.326 Å). The crystal is monoclinic with cell parameters a=16.491(9) Å, b=5.481(3) Å, c=30.086(16) Å, β=91.39(2)°. The real structure of symmetry P21/n appears as a small perturbation of the ideal structure with higher symmetry B2/m. The undulating (001)m layers of the modulated (m) phase built from one kind of cation (Bi, Sr, or Fe) are replaced by mixed layers. The waving of these layers is less regular than in the modulated phase because interrupted layers are connected. One of the most interesting results relates to the interrupted Bi layers: the isolated blocks composed of two adjacent infinite [010] ribbons, six Bi atoms wide, are similar to the ordered part (condensed zones) of the Bi-2212 modulated phase. The Bi disordered regions (diluted zones) are missing in the double-collapsed phase. An original octahedral coordination is implied for the Bi atoms located near the Fe atoms in the same undulated mixed layer. Disorder phenomena have been observed in a complementary HREM study and appear as localized faults modifying mainly the length of the Bi ribbons.

  15. Deterministic evaluation of collapse risk for a decomissioned flooded mine system: 3D numerical modelling of subsidence, roof collapse and impulse water flow.

    NASA Astrophysics Data System (ADS)

    Castellanza, Riccardo; Fernandez Merodo, Josè Antonio; di Prisco, Claudio; Frigerio, Gabriele; Crosta, Giovanni B.; Orlandi, Gianmarco

    2013-04-01

    Aim of the study is the assessment of stability conditions for an abandoned gypsum mine (Bologna , Italy). Mining was carried out til the end of the 70s by the room and pillar method. During mining a karst cave was crossed karstic waters flowed into the mine. As a consequence, the lower level of the mining is completely flooded and portions of the mining levels show critical conditions and are structurally prone to instability. Buildings and infrastructures are located above the first and second level and a large portion of the area below the mine area, and just above of the Savena river, is urbanised. Gypsum geomechanical properties change over time; water, or even air humidity, dissolves or weaken gypsum pillars, leading progressively to collapse. The mine is located in macro-crystalline gypsum beds belonging to the Messinian Gessoso Solfifera Formation. Selenitic gypsum beds are interlayered with by centimetre to meter thick shales layers. In order to evaluate the risk related to the collapse of the flooded level (level 3) a deterministic approach based on 3D numerical analyses has been considered. The entire abandoned mine system up to the ground surface has been generated in 3D. The considered critical scenario implies the collapse of the pillars and roof of the flooded level 3. In a first step, a sequential collapse starting from the most critical pillar has been simulated by means of a 3D Finite Element code. This allowed the definition of the subsidence basin at the ground surface and the interaction with the buildings in terms of ground displacements. 3D numerical analyses have been performed with an elasto-perfectly plastic constitutive model. In a second step, the effect of a simultaneous collapse of the entire level 3 has been considered in order to evaluate the risk of a flooding due to the water outflow from the mine system. Using a 3D CFD (Continuum Fluid Dynamics) finite element code the collapse of the level 3 has been simulated and the volume of

  16. Nucleosynthesis in jets from rotating magnetized stars during core collapse

    SciTech Connect

    Fujimoto, Shin-ichirou; Nishimura, Nobuya; Hashimoto, Masa-aki

    2008-05-12

    We investigate nucleosynthesis inside magnetically driven jets ejected from rotating, magnetized massive stars, or collapsars, based on long-term, magnetohydrodynamic simulations of the core collapse of six collapsars with the various distributions of magnetic fields and angular momentum before the collapse. We follow the evolution of the abundances of about 4000 nuclides from the collapse phase to the ejection phase and through the jet generation phase using a large nuclear reaction network. We find that the r-process successfully operates in the jets from three collapsars, so that U and Th are synthesized abundantly, even when the collapsar have a relatively small magnetic field (10{sup 10} G) and a moderately rotating core before the collapse. The abundance patterns inside the jets are similar to that of the r-elements in the solar system.

  17. Identification of a Collapsing Protostar

    NASA Technical Reports Server (NTRS)

    Evans, Neal J., II; Zhou, Shudong; Kompe, Carsten; Walmsley, C. M.

    1994-01-01

    The globular molecular cloud B335 contains a single, deeply embedded far-infrared source. Our recent observations of H2CO and CS lines toward this source provide direct kinematic evidence for collapse. Both the intensity and detailed shape of the line profiles match those expected from inside-out collapse inside a radius of 0.036 pc. The collapse began about 1.5 x 10(exp 5) years ago, similar to the onset of the outflow. The mass accretion rate is about 10 times the outflow rate, and about 0.4 solar mass should have now accumulated in the star and disk. Because B335 rotates only, any disk would still be small (about 3 AU). The accretion luminosity should be adequate to power the observed luminosity. Consequently, we believe that B335 is indeed a collapsing protostar.

  18. Diverse structural evolution at z > 1 in cosmologically simulated galaxies

    NASA Astrophysics Data System (ADS)

    Snyder, Gregory F.; Lotz, Jennifer; Moody, Christopher; Peth, Michael; Freeman, Peter; Ceverino, Daniel; Primack, Joel; Dekel, Avishai

    2015-08-01

    From mock Hubble Space Telescope images, we quantify non-parametric statistics of galaxy morphology, thereby predicting the emergence of relationships among stellar mass, star formation, and observed rest-frame optical structure at 1 < z < 3. We measure automated diagnostics of galaxy morphology in cosmological simulations of the formation of 22 central galaxies with 9.3 < log10M*/M⊙ < 10.7. These high-spatial-resolution zoom-in calculations enable accurate modelling of the rest-frame UV and optical morphology. Even with small numbers of galaxies, we find that structural evolution is neither universal nor monotonic: galaxy interactions can trigger either bulge or disc formation, and optically bulge-dominated galaxies at this mass may not remain so forever. Simulated galaxies with M* > 1010M⊙ contain relatively more disc-dominated light profiles than those with lower mass, reflecting significant disc brightening in some haloes at 1 < z < 2. By this epoch, simulated galaxies with specific star formation rates below 10- 9.7 yr- 1 are more likely than normal star-formers to have a broader mix of structural types, especially at M* > 1010 M⊙. We analyse a cosmological major merger at z ˜ 1.5 and find that the newly proposed Multimode-Intensity-Deviation (MID) morphology diagnostics trace later merger stages while Gini-M20 trace earlier ones. MID is sensitive also to clumpy star-forming discs. The observability time of typical MID-enhanced events in our simulation sample is <100 Myr. A larger sample of cosmological assembly histories may be required to calibrate such diagnostics in the face of their sensitivity to viewing angle, segmentation algorithm, and various phenomena such as clumpy star formation and minor mergers.

  19. On the number density of "direct collapse" black hole seeds

    NASA Astrophysics Data System (ADS)

    Habouzit, Mélanie; Volonteri, Marta; Latif, Muhammad; Dubois, Yohan; Peirani, Sébastien

    2016-08-01

    Supermassive black holes (BHs) reside in the center of most local galaxies, but they also power active galactic nuclei and quasars, detected up to z = 7. These quasars put constraints on early BH growth and the mass of BH seeds. The scenario of "direct collapse" is appealing as it leads to the formation of large mass BH seeds, 10^4-10^6 {M_{⊙}}, which eases explaining how quasars at z = 6 - 7 are powered by BHs with masses >109 M⊙. Direct collapse, however, appears to be rare, as the conditions required by the scenario are that gas is metal-free, the presence of a strong photo-dissociating Lyman-Werner flux, and large inflows of gas at the center of the halo, sustained for 10 - 100 Myr. We performed several cosmological hydrodynamical simulations that cover a large range of box sizes and resolutions, thus allowing us to understand the impact of several physical processes on the distribution of direct collapse BHs. We identify halos where direct collapse can happen, and derive the number density of BHs. We also investigate the discrepancies between hydrodynamical simulations, direct or post-processed, and semi-analytical studies. Under optimistic assumptions, we find that for direct collapse to account for BHs in normal galaxies, the critical Lyman-Werner flux required for direct collapse must be about two orders of magnitude lower than predicted by 3D simulations that include detailed chemical models. However, when supernova feedback is relatively weak, enough direct collapse BHs to explain z = 6 - 7 quasars can be obtained for Lyman-Werner fluxes about one order of magnitude lower than found in 3D simulations.

  20. On the number density of `direct collapse' black hole seeds

    NASA Astrophysics Data System (ADS)

    Habouzit, Mélanie; Volonteri, Marta; Latif, Muhammad; Dubois, Yohan; Peirani, Sébastien

    2016-11-01

    Supermassive black holes (BHs) reside in the centre of most local galaxies, but they also power active galactic nuclei and quasars, detected up to z = 7. These quasars put constraints on early BH growth and the mass of BH seeds. The scenario of `direct collapse' is appealing as it leads to the formation of large mass BH seeds, 104-106 M⊙, which eases explaining how quasars at z = 6-7 are powered by BHs with masses >109 M⊙. Direct collapse, however, appears to be rare, as the conditions required by the scenario are that gas is metal-free, the presence of a strong photodissociating Lyman-Werner flux, and large inflows of gas at the centre of the halo, sustained for 10-100 Myr. We performed several cosmological hydrodynamical simulations that cover a large range of box sizes and resolutions, thus allowing us to understand the impact of several physical processes on the distribution of direct collapse BHs. We identify haloes where direct collapse can happen, and derive the number density of BHs. We also investigate the discrepancies between hydrodynamical simulations, direct or post-processed, and semi-analytical studies. Under optimistic assumptions, we find that for direct collapse to account for BHs in normal galaxies, the critical Lyman-Werner flux required for direct collapse must be about two orders of magnitude lower than predicted by 3D simulations that include detailed chemical models. However, when supernova feedback is relatively weak, enough direct collapse BHs to explain z = 6-7 quasars can be obtained for Lyman-Werner fluxes about one order of magnitude lower than found in 3D simulations.

  1. Amyloid oligomer structure characterization from simulations: A general method

    SciTech Connect

    Nguyen, Phuong H.; Li, Mai Suan

    2014-03-07

    Amyloid oligomers and plaques are composed of multiple chemically identical proteins. Therefore, one of the first fundamental problems in the characterization of structures from simulations is the treatment of the degeneracy, i.e., the permutation of the molecules. Second, the intramolecular and intermolecular degrees of freedom of the various molecules must be taken into account. Currently, the well-known dihedral principal component analysis method only considers the intramolecular degrees of freedom, and other methods employing collective variables can only describe intermolecular degrees of freedom at the global level. With this in mind, we propose a general method that identifies all the structures accurately. The basis idea is that the intramolecular and intermolecular states are described in terms of combinations of single-molecule and double-molecule states, respectively, and the overall structures of oligomers are the product basis of the intramolecular and intermolecular states. This way, the degeneracy is automatically avoided. The method is illustrated on the conformational ensemble of the tetramer of the Alzheimer's peptide Aβ{sub 9−40}, resulting from two atomistic molecular dynamics simulations in explicit solvent, each of 200 ns, starting from two distinct structures.

  2. Amyloid oligomer structure characterization from simulations: A general method

    NASA Astrophysics Data System (ADS)

    Nguyen, Phuong H.; Li, Mai Suan; Derreumaux, Philippe

    2014-03-01

    Amyloid oligomers and plaques are composed of multiple chemically identical proteins. Therefore, one of the first fundamental problems in the characterization of structures from simulations is the treatment of the degeneracy, i.e., the permutation of the molecules. Second, the intramolecular and intermolecular degrees of freedom of the various molecules must be taken into account. Currently, the well-known dihedral principal component analysis method only considers the intramolecular degrees of freedom, and other methods employing collective variables can only describe intermolecular degrees of freedom at the global level. With this in mind, we propose a general method that identifies all the structures accurately. The basis idea is that the intramolecular and intermolecular states are described in terms of combinations of single-molecule and double-molecule states, respectively, and the overall structures of oligomers are the product basis of the intramolecular and intermolecular states. This way, the degeneracy is automatically avoided. The method is illustrated on the conformational ensemble of the tetramer of the Alzheimer's peptide Aβ9-40, resulting from two atomistic molecular dynamics simulations in explicit solvent, each of 200 ns, starting from two distinct structures.

  3. Formation of planetesimals in collapsing pebble clouds

    NASA Astrophysics Data System (ADS)

    Wahlberg Jansson, K.; Johansen, A.

    2014-07-01

    Asteroids and Kuiper belt objects are remnant planetesimals from the epoch of planet formation. Their physical properties hold important clues to understanding how minor bodies formed in the Solar Nebula. The first stage of the planet formation process is the accumulation of dust and ice grains into mm-cm-sized pebbles. Due to the interaction with the gas in the protoplanetary disk, these pebbles can clump together through the streaming instability and form gravitationally bound particle pebble 'clouds'. Pebbles in the cloud collide with each other, dissipating energy into heat. As the cloud loses energy, it contracts, and one would expect the particles to move faster and faster due to the negative heat capacity nature of self-gravitating systems. However, for high-mass clouds, the collapse is limited by free-fall and the cloud does not have time to virialize. This in turn leads to lower collision speeds but thanks to increased density also to increased collision rates and a runaway collapse. We investigate three important properties of the collapse: (i) the time-scale to collapse to solid density, (ii) the temporal evolution of the size spectrum of the pebbles, and (iii) the multiplicity of the resulting planetesimals. We find that planetesimals larger than 100 km in radius collapse on the free-fall time-scale of about 25 years. Lower-mass clouds have longer pebble collision time-scales and hence collapse much more slowly, with collapse times of a few hundred years for 10-km-scale planetesimals and a few thousand years for 1-km-scale planetesimals. The mass of the pebble cloud also determines the structure of the resulting planetesimal. The collision speed among the pebbles in low- mass clouds is below the threshold for fragmentation, forming pebble- pile planetesimals consisting of the primordial pebbles from the nebula. Planetesimals above 100 km in radius, on the other hand, consist of mixtures of dust (pebble fragments) and pebbles which have undergone

  4. Concentration, ellipsoidal collapse, and the densest dark matter haloes

    NASA Astrophysics Data System (ADS)

    Okoli, Chiamaka; Afshordi, Niayesh

    2016-03-01

    The smallest dark matter haloes are the first objects to form in the hierarchical structure formation of cold dark matter (CDM) cosmology and are expected to be the densest and most fundamental building blocks of CDM structures in our Universe. Nevertheless, the physical characteristics of these haloes have stayed illusive, as they remain well beyond the current resolution of N-body simulations (at redshift zero). However, they dominate the predictions (and uncertainty) in expected dark matter annihilation signal, amongst other astrophysical observables. Using the conservation of total energy and the ellipsoidal collapse framework, we can analytically find the mean and scatter of concentration c and 1D velocity dispersion σ1d for haloes of different virial mass M200. Both c and σ _1d/M_{200}^{1/3} are in good agreement with numerical results within the regime probed by simulations - slowly decreasing functions of mass that approach constant values at large masses. In particular, the predictions for the 1D velocity dispersion of cluster mass haloes are surprisingly robust as the inverse heat capacity of cosmological haloes crosses zero at M200 ˜ 1014 M⊙. However, we find that current extrapolations from simulations to smallest CDM haloes dramatically depend on the assumed profile (e.g. NFW versus Einasto) and fitting function, which is why theoretical considerations, such as the one presented here, can significantly constrain the range of feasible predictions.

  5. Essential ingredients in core-collapse supernovae

    SciTech Connect

    Hix, W. Raphael; Lentz, Eric J.; Chertkow, M. Austin; Harris, J. Austin; Endeve, Eirik; Baird, Mark; Messer, O. E. Bronson; Mezzacappa, Anthony; Bruenn, Stephen; Blondin, John

    2014-04-15

    Carrying 10{sup 44} joules of kinetic energy and a rich mix of newly synthesized atomic nuclei, core-collapse supernovae are the preeminent foundries of the nuclear species which make up our solar system and ourselves. Signaling the inevitable death of a massive star, and the birth of a neutron star or black hole, core-collapse supernovae combine physics over a wide range in spatial scales, from kilometer-sized hydrodynamic motions (eventually growing to gigameter scale) down to femtometer-scale nuclear reactions. We will discuss our emerging understanding of the convectively-unstable, neutrino-driven explosion mechanism, based on increasingly realistic neutrino radiation hydrodynamic simulations that include progressively better nuclear and particle physics. Multi-dimensional models with spectral neutrino transport from several research groups, which slowly develop successful explosions for a range of progenitors, have recently motivated changes in our understanding of the neutrino reheating mechanism. In a similar fashion, improvements in nuclear physics, most notably explorations of weak interactions on nuclei and the nuclear equation of state, continue to refine our understanding of the births of neutron stars and the supernovae that result. Recent progress on both the macroscopic and microscopic effects that affect core-collapse supernovae are discussed.

  6. Essential Ingredients in Core-collapse Supernovae

    SciTech Connect

    Hix, William Raphael; Lentz, E. J.; Endeve, Eirik; Baird, Mark L.; Chertkow, Merek A.; Harris, James A.; Messer, Bronson; Mezzacappa, Anthony; Bruenn, S. W.; Blondin, J. M.

    2014-03-27

    Marking the inevitable death of a massive star, and the birth of a neutron star or black hole, core-collapse supernovae bring together physics at a wide range in spatial scales, from kilometer-sized hydrodynamic motions (eventually growing to gigameter scale) down to femtometer scale nuclear reactions. Carrying 10$^{44}$ joules of kinetic energy and a rich-mix of newly synthesized atomic nuclei, core-collapse supernovae are the preeminent foundries of the nuclear species which make up ourselves and our solar system. We will discuss our emerging understanding of the convectively unstable, neutrino-driven explosion mechanism, based on increasingly realistic neutrino-radiation hydrodynamic simulations that include progressively better nuclear and particle physics. Recent multi-dimensional models with spectral neutrino transport from several research groups, which slowly develop successful explosions for a range of progenitors, have motivated changes in our understanding of the neutrino reheating mechanism. In a similar fashion, improvements in nuclear physics, most notably explorations of weak interactions on nuclei and the nuclear equation of state, continue to refine our understanding of how supernovae explode. Recent progress on both the macroscopic and microscopic effects that affect core-collapse supernovae are discussed.

  7. Essential Ingredients in Core-collapse Supernovae

    DOE PAGES

    Hix, William Raphael; Lentz, E. J.; Endeve, Eirik; Baird, Mark L.; Chertkow, Merek A.; Harris, James A.; Messer, Bronson; Mezzacappa, Anthony; Bruenn, S. W.; Blondin, J. M.

    2014-03-27

    Marking the inevitable death of a massive star, and the birth of a neutron star or black hole, core-collapse supernovae bring together physics at a wide range in spatial scales, from kilometer-sized hydrodynamic motions (eventually growing to gigameter scale) down to femtometer scale nuclear reactions. Carrying 10more » $$^{44}$$ joules of kinetic energy and a rich-mix of newly synthesized atomic nuclei, core-collapse supernovae are the preeminent foundries of the nuclear species which make up ourselves and our solar system. We will discuss our emerging understanding of the convectively unstable, neutrino-driven explosion mechanism, based on increasingly realistic neutrino-radiation hydrodynamic simulations that include progressively better nuclear and particle physics. Recent multi-dimensional models with spectral neutrino transport from several research groups, which slowly develop successful explosions for a range of progenitors, have motivated changes in our understanding of the neutrino reheating mechanism. In a similar fashion, improvements in nuclear physics, most notably explorations of weak interactions on nuclei and the nuclear equation of state, continue to refine our understanding of how supernovae explode. Recent progress on both the macroscopic and microscopic effects that affect core-collapse supernovae are discussed.« less

  8. Essential ingredients in core-collapse supernovae

    NASA Astrophysics Data System (ADS)

    Hix, W. Raphael; Lentz, Eric J.; Endeve, Eirik; Baird, Mark; Chertkow, M. Austin; Harris, J. Austin; Messer, O. E. Bronson; Mezzacappa, Anthony; Bruenn, Stephen; Blondin, John

    2014-04-01

    Carrying 1044 joules of kinetic energy and a rich mix of newly synthesized atomic nuclei, core-collapse supernovae are the preeminent foundries of the nuclear species which make up our solar system and ourselves. Signaling the inevitable death of a massive star, and the birth of a neutron star or black hole, core-collapse supernovae combine physics over a wide range in spatial scales, from kilometer-sized hydrodynamic motions (eventually growing to gigameter scale) down to femtometer-scale nuclear reactions. We will discuss our emerging understanding of the convectively-unstable, neutrino-driven explosion mechanism, based on increasingly realistic neutrino radiation hydrodynamic simulations that include progressively better nuclear and particle physics. Multi-dimensional models with spectral neutrino transport from several research groups, which slowly develop successful explosions for a range of progenitors, have recently motivated changes in our understanding of the neutrino reheating mechanism. In a similar fashion, improvements in nuclear physics, most notably explorations of weak interactions on nuclei and the nuclear equation of state, continue to refine our understanding of the births of neutron stars and the supernovae that result. Recent progress on both the macroscopic and microscopic effects that affect core-collapse supernovae are discussed.

  9. Unconstrained Structure Formation in Coarse-Grained Protein Simulations

    NASA Astrophysics Data System (ADS)

    Bereau, Tristan

    The ability of proteins to fold into well-defined structures forms the basis of a wide variety of biochemical functions in and out of the cell membrane. Many of these processes, however, operate at time- and length-scales that are currently unattainable by all-atom computer simulations. To cope with this difficulty, increasingly more accurate and sophisticated coarse-grained models are currently being developed. In the present thesis, we introduce a solvent-free coarse-grained model for proteins. Proteins are modeled by four beads per amino acid, providing enough backbone resolution to allow for accurate sampling of local conformations. It relies on simple interactions that emphasize structure, such as hydrogen bonds and hydrophobicity. Realistic alpha/beta content is achieved by including an effective nearest-neighbor dipolar interaction. Parameters are tuned to reproduce both local conformations and tertiary structures. By studying both helical and extended conformations we make sure the force field is not biased towards any particular secondary structure. Without any further adjustments or bias a realistic oligopeptide aggregation scenario is observed. The model is subsequently applied to various biophysical problems: (i) kinetics of folding of two model peptides, (ii) large-scale amyloid-beta oligomerization, and (iii) protein folding cooperativity. The last topic---defined by the nature of the finite-size thermodynamic transition exhibited upon folding---was investigated from a microcanonical perspective: the accurate evaluation of the density of states can unambiguously characterize the nature of the transition, unlike its corresponding canonical analysis. Extending the results of lattice simulations and theoretical models, we find that it is the interplay between secondary structure and the loss of non-native tertiary contacts which determines the nature of the transition. Finally, we combine the peptide model with a high-resolution, solvent-free, lipid

  10. Environmental consequences of the Retsof Salt Mine roof collapse

    USGS Publications Warehouse

    Yager, Richard M.

    2013-01-01

    In 1994, the largest salt mine in North America, which had been in operation for more than 100 years, catastrophically flooded when the mine ceiling collapsed. In addition to causing the loss of the mine and the mineral resources it provided, this event formed sinkholes, caused widespread subsidence to land, caused structures to crack and subside, and changed stream flow and erosion patterns. Subsequent flooding of the mine drained overlying aquifers, changed the groundwater salinity distribution (rendering domestic wells unusable), and allowed locally present natural gas to enter dwellings through water wells. Investigations including exploratory drilling, hydrologic and water-quality monitoring, geologic and geophysical studies, and numerical simulation of groundwater flow, salinity, and subsidence have been effective tools in understanding the environmental consequences of the mine collapse and informing decisions about management of those consequences for the future. Salt mines are generally dry, but are susceptible to leaks and can become flooded if groundwater from overlying aquifers or surface water finds a way downward into the mined cavity through hundreds of feet of rock. With its potential to flood the entire mine cavity, groundwater is a constant source of concern for mine operators. The problem is compounded by the viscous nature of salt and the fact that salt mines commonly lie beneath water-bearing aquifers. Salt (for example halite or potash) deforms and “creeps” into the mined openings over time spans that range from years to centuries. This movement of salt can destabilize the overlying rock layers and lead to their eventual sagging and collapse, creating permeable pathways for leakage of water and depressions or openings at land surface, such as sinkholes. Salt is also highly soluble in water; therefore, whenever water begins to flow into a salt mine, the channels through which it flows increase in diameter as the surrounding salt dissolves

  11. Effect of doping of graphene structure: A Monte Carlo simulations

    NASA Astrophysics Data System (ADS)

    Masrour, R.; Jabar, A.

    2016-10-01

    In this work, we have studied the effect of magnetic atom doping of graphene structure using Monte Carlo simulation. The reduced critical temperature with the magnetic atom doping x has been deduced from the thermal variation of magnetization and magnetic susceptibility. The variation of magnetization versus the crystal field of grapheme structure for different x and for different reduced temperatures has been established. We also have measured the coercive field (hC) as a function x in grapheme structure, finding that hC increases with increasing x concentration as predicted experimentally. The doping-induced magnetism in graphene. Magnetically atom doping in graphene systems are potential candidates for application in future spintronic devices, magnetometry requires macroscopic quantities of graphene to detect magnetic moments directly.

  12. Analysis of forest structure using thematic mapper simulator data

    NASA Technical Reports Server (NTRS)

    Peterson, D. L.; Westman, W. E.; Brass, J. A.; Stephenson, N. J.; Ambrosia, V. G.; Spanner, M. A.

    1986-01-01

    The potential of Thematic Mapper Simulator (TMS) data for sensing forest structure information has been explored by principal components and feature selection techniques. In a survey of forest structural properties conducted for 123 field sites of the Sequoia National Park, the canopy closure could be well estimated (r = 0.62 to 0.69) by a variety of channel bands and band ratios, without reference to the forest type. Estimation of the basal area was less successful (r = 0.51 or less) on the average, but could be improved for certain forest types when data were stratified by floristic composition. To achieve such a stratification, individual sites were ordinated by a detrended correspondence analysis based on the canopy of dominant species. The analysis of forest structure in the Sequoia data suggests that total basal area can be best predicted in stands of lower density, and in younger even-aged managed stands.

  13. Structural Simulations and Conservation Analysis -Historic Building Information Model (HBIM)

    NASA Astrophysics Data System (ADS)

    Dore, C.; Murphy, M.; McCarthy, S.; Brechin, F.; Casidy, C.; Dirix, E.

    2015-02-01

    In this paper the current findings to date of the Historic Building Information Model (HBIM) of the Four Courts in Dublin are presented. The Historic Building Information Model (HBIM) forms the basis for both structural and conservation analysis to measure the impact of war damage which still impacts on the building. The laser scan survey was carried out in the summer of 2014 of the internal and external structure. After registration and processing of the laser scan survey, the HBIM was created of the damaged section of the building and is presented as two separate workflows in this paper. The first is the model created from historic data, the second a procedural and segmented model developed from laser scan survey of the war damaged drum and dome. From both models structural damage and decay simulations will be developed for documentation and conservation analysis.

  14. Critical slowing down as early warning for the onset of collapse in mutualistic communities

    PubMed Central

    Dakos, Vasilis; Bascompte, Jordi

    2014-01-01

    Tipping points are crossed when small changes in external conditions cause abrupt unexpected responses in the current state of a system. In the case of ecological communities under stress, the risk of approaching a tipping point is unknown, but its stakes are high. Here, we test recently developed critical slowing-down indicators as early-warning signals for detecting the proximity to a potential tipping point in structurally complex ecological communities. We use the structure of 79 empirical mutualistic networks to simulate a scenario of gradual environmental change that leads to an abrupt first extinction event followed by a sequence of species losses until the point of complete community collapse. We find that critical slowing-down indicators derived from time series of biomasses measured at the species and community level signal the proximity to the onset of community collapse. In particular, we identify specialist species as likely the best-indicator species for monitoring the proximity of a community to collapse. In addition, trends in slowing-down indicators are strongly correlated to the timing of species extinctions. This correlation offers a promising way for mapping species resilience and ranking species risk to extinction in a given community. Our findings pave the road for combining theory on tipping points with patterns of network structure that might prove useful for the management of a broad class of ecological networks under global environmental change. PMID:25422412

  15. Correlating simulated surface marks with near-surface tornado structure

    NASA Astrophysics Data System (ADS)

    Zimmerman, Michael I.

    Tornadoes often leave behind patterns of debris deposition, or "surface marks", which provide a direct signature of their near surface winds. The intent of this thesis is to investigate what can be learned about near-surface tornado structure and intensity through the properties of surface marks generated by simulated, debris-laden tornadoes. Earlier work showed through numerical simulations that the tornado's structure and intensity is highly sensitive to properties of the near-surface flow and can change rapidly in time for some conditions. The strongest winds often occur within tens of meters of the surface where the threat to human life and property is highest, and factors such as massive debris loadings and asymmetry of the main vortex have proven to be critical complications in some regimes. However, studying this portion of the flow in the field is problematic; while Doppler radar provides the best tornado wind field measurements, it cannot probe below about 20 m, and interpretation of Doppler data requires assumptions about tornado symmetry, steadiness in time, and correlation between scatterer and air velocities that are more uncertain near the surface. As early as 1967, Fujita proposed estimating tornado wind speeds from analysis of aerial photography and ground documentation of surface marks. A handful of studies followed but were limited by difficulties in interpreting physical origins of the marks, and little scientific attention has been paid to them since. Here, Fujita's original idea is revisited in the context of three-dimensional, large-eddy simulations of tornadoes with fully-coupled debris. In this thesis, the origins of the most prominent simulated marks are determined and compared with historical interpretations of real marks. The earlier hypothesis that cycloidal surface marks were directly correlated with the paths of individual vortices (either the main vortex or its secondary vortices, when present) is unsupported by the simulation results

  16. Energy balance in the WTC collapse

    NASA Astrophysics Data System (ADS)

    Zhu, Kaiqi; Xu, Kang; Ansourian, Peter; Tahmasebinia, Faham; Alonso-Marroquin, Fernando

    2016-08-01

    The main aim of this report is to provide an analysis of Twin Towers of the New York City's World Trade Centre collapsed after attacked by two jet aircrafts. The approach mainly focused on the effect of temperature on mechanical properties of the building, by modelling heat energy in the south tower. Energy balance during the collapse between the energy inputs by aircraft petrol and the transient heat to the towers was conducted. Both the overall structure between 80 to 83 stories and individual elements was modelled. The main elements contributed to the heat transition includes external and internal columns. Heat applied in 2D and 3D models for single elements was through convection and conduction. Analysis of transient heat was done using Strand7.

  17. Stress evolution during caldera collapse

    NASA Astrophysics Data System (ADS)

    Holohan, E. P.; Schöpfer, M. P. J.; Walsh, J. J.

    2015-07-01

    The mechanics of caldera collapse are subject of long-running debate. Particular uncertainties concern how stresses around a magma reservoir relate to fracturing as the reservoir roof collapses, and how roof collapse in turn impacts upon the reservoir. We used two-dimensional Distinct Element Method models to characterise the evolution of stress around a depleting sub-surface magma body during gravity-driven collapse of its roof. These models illustrate how principal stress orientations rotate during progressive deformation so that roof fracturing transitions from initial reverse faulting to later normal faulting. They also reveal four end-member stress paths to fracture, each corresponding to a particular location within the roof. Analysis of these paths indicates that fractures associated with ultimate roof failure initiate in compression (i.e. as shear fractures). We also report on how mechanical and geometric conditions in the roof affect pre-failure unloading and post-failure reloading of the reservoir. In particular, the models show how residual friction within a failed roof could, without friction reduction mechanisms or fluid-derived counter-effects, inhibit a return to a lithostatically equilibrated pressure in the magma reservoir. Many of these findings should be transferable to other gravity-driven collapse processes, such as sinkhole formation, mine collapse and subsidence above hydrocarbon reservoirs.

  18. Detection of Coherent Structures in Extreme-Scale Simulations

    SciTech Connect

    Kamath, C; Iverson, J; Kirk, R; Karypis, G

    2012-03-24

    The analysis of coherent structures is a common problem in many scientific domains ranging from astrophysics to combustion, fusion, and materials science. The data from three-dimensional simulations are analyzed to detect the structures, extract statistics on them, and track them over time to gain insights into the phenomenon being modeled. This analysis is typically done off-line, using data that have been written out by the simulations. However, the move towards extreme scale architectures, with multi-core processors and graphical processing units, will affect how such analysis is done as it is unlikely that the systems will support the I/O bandwidth required for off-line analysis. Moving the analysis in-situ is a solution only if we know a priori what analysis will be done, as well as the algorithms used and their parameter settings. Even then, we need to ensure that this will not substantially increase the memory requirements or the data movement as the former will be limited and the latter will be expensive. In the Exa-DM project, a collaboration between Lawrence Livermore National Laboratory and University of Minnesota, we are exploring ways in which we can address the conflicting demands of coherent structure analysis of simulation data and the architecture of modern parallel systems, while enabling scientific discovery at the exascale. In this paper, we describe our work in two areas: the in situ implementation of an existing algorithm for coherent structure analysis and the use of graph-based techniques to efficiently compress the data.

  19. Brownian Dynamics Simulation of Protein Solutions: Structural and Dynamical Properties

    SciTech Connect

    Mereghetti, Paolo; Gabdoulline, Razif; Wade, Rebecca C.

    2010-12-01

    The study of solutions of biomacromolecules provides an important basis for understanding the behavior of many fundamental cellular processes, such as protein folding, self-assembly, biochemical reactions, and signal transduction. Here, we describe a Brownian dynamics simulation procedure and its validation for the study of the dynamic and structural properties of protein solutions. In the model used, the proteins are treated as atomically detailed rigid bodies moving in a continuum solvent. The protein-protein interaction forces are described by the sum of electrostatic interaction, electrostatic desolvation, nonpolar desolvation, and soft-core repulsion terms. The linearized Poisson-Boltzmann equation is solved to compute electrostatic terms. Simulations of homogeneous solutions of three different proteins with varying concentrations, pH, and ionic strength were performed. The results were compared to experimental data and theoretical values in terms of long-time self-diffusion coefficients, second virial coefficients, and structure factors. The results agree with the experimental trends and, in many cases, experimental values are reproduced quantitatively. There are no parameters specific to certain protein types in the interaction model, and hence the model should be applicable to the simulation of the behavior of mixtures of macromolecules in cell-like crowded environments.

  20. Numerical simulation of shock interaction with above-ground structures

    NASA Astrophysics Data System (ADS)

    Baum, Joseph D.; Lohner, Rainald

    1994-05-01

    This final report for DNA contract DNA 001-89-C-0098 for the time period May 15, 1989 to Dec 31, 1992 describes the results of several of the computations conducted under this research effort. The numerical simulations conducted simulated shock wave diffraction phenomenon about complex-geometry two-dimensional and three-dimensional structures. Since a significant part of this effort was composed of parametric studies that have been delivered to the sponsors, the Defense Nuclear Agency and the Air Force Ballistic Missile Organization (BMO), and conducted under the now defunct Rail Garrison project, we included in this report a detailed description of the results of the major computations, and a brief summary of all the repetitive computations. The final report is divided into three sections. Chapter 1 describes in detail the two-dimensional numerical methodology and typical two-dimensional computation, i.e., the application of the numerical methodology to the simulation of shock interaction with a typical 2-D train (a 2-D cut at the center of a 3-D train). Chapter 2 describes the numerical development of a passive shock reflector, a major effort undertaken in this project. The objective of this effort was to design a passive device that, while allowing the ventilation of the enclosure under steady conditions, will prevent blast waves impinging on the wall from entering the enclosure when the structure is impacted by a shock.

  1. Structural development and energy dissipation in simulated silicon apices.

    PubMed

    Jarvis, Samuel Paul; Kantorovich, Lev; Moriarty, Philip

    2013-12-20

    In this paper we examine the stability of silicon tip apices by using density functional theory (DFT) calculations. We find that some tip structures - modelled as small, simple clusters - show variations in stability during manipulation dependent on their orientation with respect to the sample surface. Moreover, we observe that unstable structures can be revealed by a characteristic hysteretic behaviour present in the F(z) curves that were calculated with DFT, which corresponds to a tip-induced dissipation of hundreds of millielectronvolts resulting from reversible structural deformations. Additionally, in order to model the structural evolution of the tip apex within a low temperature NC-AFM experiment, we simulated a repeated tip-surface indentation until the tip structure converged to a stable termination and the characteristic hysteretic behaviour was no longer observed. Our calculations suggest that varying just a single rotational degree of freedom can have as measurable an impact on the tip-surface interaction as a completely different tip structure.

  2. 3D Ultrasonic Wave Simulations for Structural Health Monitoring

    NASA Technical Reports Server (NTRS)

    Campbell, Leckey Cara A/; Miler, Corey A.; Hinders, Mark K.

    2011-01-01

    Structural health monitoring (SHM) for the detection of damage in aerospace materials is an important area of research at NASA. Ultrasonic guided Lamb waves are a promising SHM damage detection technique since the waves can propagate long distances. For complicated flaw geometries experimental signals can be difficult to interpret. High performance computing can now handle full 3-dimensional (3D) simulations of elastic wave propagation in materials. We have developed and implemented parallel 3D elastodynamic finite integration technique (3D EFIT) code to investigate ultrasound scattering from flaws in materials. EFIT results have been compared to experimental data and the simulations provide unique insight into details of the wave behavior. This type of insight is useful for developing optimized experimental SHM techniques. 3D EFIT can also be expanded to model wave propagation and scattering in anisotropic composite materials.

  3. Development and mechanical properties of structural materials from lunar simulants

    NASA Technical Reports Server (NTRS)

    Desai, Chandra S.; Girdner, K.; Saadatmanesh, H.; Allen, T.

    1991-01-01

    Development of the technologies for manufacture of structural and construction materials on the Moon, utilizing local lunar soil (regolith), without the use of water, is an important element for habitats and explorations in space. Here, it is vital that the mechanical behavior such as strength and flexural properties, fracture toughness, ductility and deformation characteristics be defined toward establishment of the ranges of engineering applications of the materials developed. The objective is to describe the research results in two areas for the above goal: (1) liquefaction of lunar simulant (at about 100 C) with different additives (fibers, powders, etc.); and (2) development and use of a new triaxial test device in which lunar simulants are first compressed under cycles of loading, and then tested with different vacuums and initial confining or in situ stress.

  4. Critical Phenomena in the Aspherical Collapse of Radiation Fluids

    NASA Astrophysics Data System (ADS)

    Baumgarte, Thomas

    2016-03-01

    We study critical phenomena in the gravitational collapse of radiation fluids. We perform numerical simulations in both spherical symmetry and axisymmetry, and observe critical scaling in both supercritical evolutions, which lead to the formation of a black hole, and subcritical evolutions, in which case the fluid disperses to infinity and leaves behind flat space. We identify the critical solution in spherically symmetric collapse, and study the approach to this critical solution in the absence of spherical symmetry. Our simulations are preformed with an unconstrained evolution code, implemented in spherical polar coordinates, and adopting ``moving-puncture'' coordinates. Supported in part by NSF Grant No. PHY-1402780 to Bowdoin College.

  5. Visualizing microscopic structure and dynamics of simulated silicate melts

    NASA Astrophysics Data System (ADS)

    Karki, B. B.; Bohara, B.

    2013-12-01

    We perform a detailed visualization-based analysis of atomic-position series data for silicate melts obtained from first-principles (quantum mechanical) molecular dynamics simulations. This involves processing atomic trajectories as well as relevant structural and dynamical information. Clutter associated with trajectory rendering can be reduced with an adaptive position-merging scheme. To gain insight into the short- and mid-range order of the melt structure, we extract and visualize the details of radial distribution function (RDF) and coordination environment. The first peaks of all partial RDFs lie in the distance range of 1.6 to 4 Å and the corresponding mean coordination numbers vary from less than 1 to more than 9. The coordination environments involving cations and anions differ substantially from each other, each consisting of a rich set of coordination states. These states vary both spatially and temporally: The per-atom coordination information extracted on the fly is rendered instantaneously as the spheres and polyhedra as well as along the corresponding trajectories using a color-coding scheme. The information is also visualized as clusters formed by atoms that are coordinated at different time intervals during the entire simulation. The animated visualization suggests that the melt structure can be viewed as a dynamic (partial) network of Al/Si-O coordination polyhedra connected via bridging oxygen in an inhomogeneous distribution of mobile cations including magnesium, calcium, and protons.

  6. Full-wave simulations of electromagnetic cloaking structures

    NASA Astrophysics Data System (ADS)

    Cummer, Steven A.; Popa, Bogdan-Ioan; Schurig, David; Smith, David R.; Pendry, John

    2006-09-01

    Pendry have reported electromagnetically anisotropic and inhomogeneous shells that, in theory, completely shield an interior structure of arbitrary size from electromagnetic fields without perturbing the external fields. Neither the coordinate transformation-based analytical formulation nor the supporting ray-tracing simulation indicate how material perturbations and full-wave effects might affect the solution. We report fully electromagnetic simulations of the cylindrical version of this cloaking structure using ideal and nonideal (but physically realizable) electromagnetic parameters that show that the low-reflection and power-flow bending properties of the electromagnetic cloaking structure are not especially sensitive to modest permittivity and permeability variations. The cloaking performance degrades smoothly with increasing loss, and effective low-reflection shielding can be achieved with a cylindrical shell composed of an eight- (homogeneous) layer approximation of the ideal continuous medium. An imperfect but simpler version of the cloaking material is derived and is shown to reproduce the ray bending of the ideal material in a manner that may be easier to experimentally realize.

  7. Simulation and modeling techniques for parachute fluid-structure interactions

    NASA Astrophysics Data System (ADS)

    Stein, Keith Robert

    This thesis is on advanced flow simulation and modeling techniques for fluid-structure interactions (FSI) encountered in parachute systems. The main fluid dynamics solver is based on the Deforming-Spatial-Domain/Stabilized Space-Time (DSD/SST) finite element formulation of the Navier-Stokes equations of incompressible flows. The DSD/SST formulation, which was introduced earlier for flow computations involving moving boundaries and interfaces, gives us the capability to handle parachute structural deformations. The structural dynamics solver is based on a total Lagrangian finite element formulation of the equilibrium equations for a "tension structure" composed of membranes, cables, and concentrated masses. The fluid and structure are coupled iteratively within a nonlinear iteration loop, with multiple nonlinear iterations improving the convergence of the coupled system. Unstructured mesh generation and mesh moving techniques for handling of parachute deformations are developed and/or adapted to address the challenges posed by the coupled problem. The FSI methodology was originally implemented on the Thinking Machines CM-5 supercomputer and is now actively used on the CRAY T3E-1200. Applications to a variety of round and cross parachutes used by the US Army are presented, and different stages of the parachute operations, including inflation and terminal descent, are modeled.

  8. Robust simulation of buckled structures using reduced order modeling

    NASA Astrophysics Data System (ADS)

    Wiebe, R.; Perez, R. A.; Spottswood, S. M.

    2016-09-01

    Lightweight metallic structures are a mainstay in aerospace engineering. For these structures, stability, rather than strength, is often the critical limit state in design. For example, buckling of panels and stiffeners may occur during emergency high-g maneuvers, while in supersonic and hypersonic aircraft, it may be induced by thermal stresses. The longstanding solution to such challenges was to increase the sizing of the structural members, which is counter to the ever present need to minimize weight for reasons of efficiency and performance. In this work we present some recent results in the area of reduced order modeling of post- buckled thin beams. A thorough parametric study of the response of a beam to changing harmonic loading parameters, which is useful in exposing complex phenomena and exercising numerical models, is presented. Two error metrics that use but require no time stepping of a (computationally expensive) truth model are also introduced. The error metrics are applied to several interesting forcing parameter cases identified from the parametric study and are shown to yield useful information about the quality of a candidate reduced order model. Parametric studies, especially when considering forcing and structural geometry parameters, coupled environments, and uncertainties would be computationally intractable with finite element models. The goal is to make rapid simulation of complex nonlinear dynamic behavior possible for distributed systems via fast and accurate reduced order models. This ability is crucial in allowing designers to rigorously probe the robustness of their designs to account for variations in loading, structural imperfections, and other uncertainties.

  9. Geophysical observations at cavity collapse

    NASA Astrophysics Data System (ADS)

    Jousset, Philippe; Bazargan-Sabet, Behrooz; Lebert, François; Bernardie, Séverine; Gourry, Jean-Christophe

    2010-05-01

    In Lorraine region (France) salt layers at about 200 meters depth are exploited by Solvay using solution mining methodology which consists in extracting the salt by dissolution, collapsing the cavern overburden during the exploitation phase and finally reclaiming the landscape by creating a water area. In this process, one of the main challenges for the exploiting company is to control the initial 120-m diameter collapse so as to minimize possible damages. In order to detect potential precursors and understand processes associated with such collapses, a wide series of monitoring techniques including micro seismics, broad-band seismology, hydro-acoustic, electromagnetism, gas probing, automatic leveling, continuous GPS, continuous gravity and borehole extensometry was set-up in the frame of an in-situ study carried out by the "Research Group for the Impact and Safety of Underground Works" (GISOS, France). Equipments were set-up well before the final collapse, giving a unique opportunity to analyze a great deal of information prior to and during the collapse process which has been successfully achieved on February the 13th, 2009 by controlling the cavity internal pressure. In this work, we present the results of data recorded by a network of 3 broadband seismometers, 2 accelerometers, 2 tilt-meters and a continuously gravity meter. We relate the variations of the brine pumping rate with the evolutions of the induced geophysical signals and finally we propose a first mechanical model for describing the controlled collapse. Beyond the studied case, extrapolation of the results obtained might contribute to the understanding of uncontrolled cavity collapses, such as pit-craters or calderas at volcanoes.

  10. Simulation analysis for ion assisted fast ignition using structured targets

    NASA Astrophysics Data System (ADS)

    Sakagami, H.; Johzaki, T.; Sunahara, A.; Nagatomo, H.

    2016-05-01

    As the heating efficiency by fast electrons in the fast ignition scheme is estimated to be very low due to their large divergence angle and high energy. To mitigate this problem, low-density plastic foam, which can generate not only proton (H+) but also carbon (C6+) beams, can be introduced to currently used cone-guided targets and additional core heating by ions is expected. According to 2D PIC simulations, it is found that the ion beams also diverge by the static electric field and concave surface deformation. Thus structured targets are suggested to optimize ion beam characteristics, and their improvement and core heating enhancement by ion beams are confirmed.

  11. Probabilistic Simulation of the Human Factor in Structural Reliability

    NASA Technical Reports Server (NTRS)

    Chamis, Christos C.; Singhal, Surendra N.

    1994-01-01

    The formal approach described herein computationally simulates the probable ranges of uncertainties for the human factor in probabilistic assessments of structural reliability. Human factors such as marital status, professional status, home life, job satisfaction, work load, and health are studied by using a multifactor interaction equation (MFIE) model to demonstrate the approach. Parametric studies in conjunction with judgment are used to select reasonable values for the participating factors (primitive variables). Subsequently performed probabilistic sensitivity studies assess the suitability of the MFIE as well as the validity of the whole approach. Results show that uncertainties range from 5 to 30 percent for the most optimistic case, assuming 100 percent for no error (perfect performance).

  12. On voltage collapse in electric power systems

    SciTech Connect

    Chiang, H.D.; Dobson, I.; Thomas, R.J.; Thorp, J.S.; Fekih-Ahmed, L. . School of Electrical Engineering)

    1990-05-01

    Several voltage collapses have had a period of slowly decreasing voltage followed by an accelerating collapse in voltage. This paper analyzes this type of voltage collapse based on a center manifold voltage collapse model. The essence of this model is that the system dynamics after bifurcation are captured by the center manifold trajectory and it is a computable model that allows prediction of voltage collapse. Both physical explanations and computational considerations of this model are presented. The authors clarify the use of static and dynamic models to explain voltage collapse. Voltage collapse dynamics are demonstrated on a simple power system model.

  13. Simulating Self-organization and Interference between Certain Hierarchical Structures.

    PubMed

    Raczynski, Stanislaw

    2014-10-01

    A model of the dynamics and interactions between organizations with self-organizing hierarchical structures is presented for discrete events. The active objects of the model are individuals (people, organization members). The parameters of an individual are ability, corruption level, resources, and lust for power, among others. Three organizations are generated and interact with each other, attempting to gain more members and power. The individuals appear and disappear, due to a simple 'birth-and-death' process. If an individual disappears from the model, a corresponding reconfiguration in the hierarchical structure occurs. The organization's growth and macro-patterns are the result of the activities of the individuals. The aim of the simulation is to visualize the evolution of the organizations and the stability of the whole system. A 'steady state' for the model is rare; instead, in most parameter configurations, the model enters into oscillations.

  14. The Structural Underpinnings of Policy Learning: A Classroom Policy Simulation

    NASA Astrophysics Data System (ADS)

    Bird, Stephen

    This paper investigates the relationship between the centrality of individual actors in a social network structure and their policy learning performance. In a dynamic comparable to real-world policy networks, results from a classroom simulation demonstrate a strong relationship between centrality in social learning networks and grade performance. Previous research indicates that social network centrality should have a positive effect on learning in other contexts and this link is tested in a policy learning context. Second, the distinction between collaborative learning versus information diffusion processes in policy learning is examined. Third, frequency of interaction is analyzed to determine whether consistent, frequent tics have a greater impact on the learning process. Finally, the data arc analyzed to determine if the benefits of centrality have limitations or thresholds when benefits no longer accrue. These results demonstrate the importance of network structure, and support a collaborative conceptualization of the policy learning process.

  15. Probabilistic simulation of the human factor in structural reliability

    NASA Technical Reports Server (NTRS)

    Shah, Ashwin R.; Chamis, Christos C.

    1991-01-01

    Many structural failures have occasionally been attributed to human factors in engineering design, analyses maintenance, and fabrication processes. Every facet of the engineering process is heavily governed by human factors and the degree of uncertainty associated with them. Factors such as societal, physical, professional, psychological, and many others introduce uncertainties that significantly influence the reliability of human performance. Quantifying human factors and associated uncertainties in structural reliability require: (1) identification of the fundamental factors that influence human performance, and (2) models to describe the interaction of these factors. An approach is being developed to quantify the uncertainties associated with the human performance. This approach consists of a multi factor model in conjunction with direct Monte-Carlo simulation.

  16. Linking numerical simulations of molecular cloud structure with observations.

    NASA Astrophysics Data System (ADS)

    Kainulainen, Jouni

    2015-08-01

    Understanding the physical processes that control the life-cycle of the cold interstellar medium (ISM) is one of the key themes in the astrophysics of galaxies today. This importance derives from the role of the cold ISM as the birthplace of new stars, and consequently, as an indivisible constituent of galaxy evolution. In the current paradigm of turbulence-regulated ISM, star formation is controlled by the internal structure of individual molecular clouds, which in turn is set by a complex interplay of turbulence, gravity, and magnetic fields in the clouds. It is in the very focus of the field to determine how these processes give rise to the observed structure of molecular clouds. In this talk, I will review our current efforts to confront this paradigm with the goal of observationally constraining how different processes regulate molecular cloud structure and star formation. At the heart of these efforts lies the use of numerical simulations of gravo-turbulent media to A) define physically meaningful characteristics that are sensitive to the different cloud-shaping processes, and B) determine if and how such characteristics can be recovered by observations. I will show in my talk how this approach has recently led to new constraints for some fundamental measures of the molecular cloud structure. Such constraints allow us to assess the roles of turbulence and gravity in controlling the ISM structure and star formation. I will also highlight specific recent results, focusing on the nature of filamentary structures within molecular clouds. These results may provide a novel set of observational constraints with which to challenge the turbulence-regulated ISM paradigm. Finally, I will discuss the current challenges and open questions in understanding the link between molecular cloud structure and star formation, and speculate on key directions to aim the near-future studies.

  17. Gopherus agassizii (desert tortoise). Burrow collapse

    USGS Publications Warehouse

    Loughran, Caleb L.; Ennen, Joshua; Lovich, Jeffrey E.

    2011-01-01

    In the deserts of the southwestern U.S., burrows are utilized by the Desert Tortoise to escape environmental extremes (reviewed by Ernst and Lovich 2009. Turtles of the United States and Canada. 2nd ed. Johns Hopkins Univ. Press, Baltimore, Maryland. 827 pp.). However, the potential for mortality through burrow collapse and entrapment is poorly documented. Nicholson and Humphreys (1981. Proceedings of the Desert Tortoise Council, pp. 163−194) suggested that collapse due to livestock trampling may cause mortality. In addition, Lovich et al. (2011. Chelon. Cons. Biol. 10[1]:124–129) documented a Desert Tortoise that used a steel culvert as a burrow surrogate. The culvert filled completely with sediment following a significant rain event, entombing the animal and ultimately resulting in its death. We note that this mortality was associated with an anthropogenic structure; because tortoises are prodigious diggers, one might hypothesize that they have the ability to dig out of collapsed natural burrows in most situations. Circumstances described here presented us with an opportunity to test this hypothesis.

  18. Modeling and Simulation of Variable Mass, Flexible Structures

    NASA Technical Reports Server (NTRS)

    Tobbe, Patrick A.; Matras, Alex L.; Wilson, Heath E.

    2009-01-01

    distribution of mass in the fuel tank or Solid Rocket Booster (SRB) case for various propellant levels. Based on the mass consumed by the liquid engine or SRB, the appropriate propellant model is coupled with the dry structure model for the stage. Then using vehicle configuration data, the integrated vehicle model is assembled and operated on by the constant system shape functions. The system mode shapes and frequencies can then be computed from the resulting generalized mass and stiffness matrices for that mass configuration. The rigid body mass properties of the vehicle are derived from the integrated vehicle model. The coupling terms between the vehicle rigid body motion and elastic deformation are also updated from the constant system shape functions and the integrated vehicle model. This approach was first used to analyze variable mass spinning beams and then prototyped into a generic dynamics simulation engine. The resulting code was tested against Crew Launch Vehicle (CLV-)class problems worked in the TREETOPS simulation package and by Wilson [2]. The Ares I System Integration Laboratory (SIL) is currently being developed at the Marshall Space Flight Center (MSFC) to test vehicle avionics hardware and software in a hardware-in-the-loop (HWIL) environment and certify that the integrated system is prepared for flight. The Ares I SIL utilizes the Ares Real-Time Environment for Modeling, Integration, and Simulation (ARTEMIS) tool to simulate the launch vehicle and stimulate avionics hardware. Due to the presence of vehicle control system filters and the thrust oscillation suppression system, which are tuned to the structural characteristics of the vehicle, ARTEMIS must incorporate accurate structural models of the Ares I launch vehicle. The ARTEMIS core dynamics simulation models the highly coupled nature of the vehicle flexible body dynamics, propellant slosh, and vehicle nozzle inertia effects combined with mass and flexible body properties that vary significant with time

  19. Inelastic collapse in one-dimensional driven systems under gravity.

    PubMed

    Wakou, Jun'ichi; Kitagishi, Hiroyuki; Sakaue, Takahiro; Nakanishi, Hiizu

    2013-04-01

    We study inelastic collapse in a one-dimensional N-particle system when the system is driven from below under gravity. We investigate the hard-sphere limit of inelastic soft-sphere systems by numerical simulations to find how the collision rate per particle n(coll) increases as a function of the elastic constant of the sphere k when the restitution coefficient e is kept constant. For systems with large enough N>/~20, we find three regimes in e depending on the behavior of n(coll) in the hard-sphere limit: (i) an uncollapsing regime for 1≥e>e(c1), where n(coll) converges to a finite value, (ii) a logarithmically collapsing regime for e(c1)>e>e(c2), where n(coll) diverges as n(coll)~logk, and (iii) a power-law collapsing regime for e(c2)>e>0, where n(coll) diverges as n(coll)~k(α) with an exponent α that depends on N. The power-law collapsing regime shrinks as N decreases and seems not to exist for the system with N=3, while, for large N, the size of the uncollapsing and the logarithmically collapsing regime decreases as e(c1)=/~1-2.6/N and e(c2)=/~1-3.0/N. We demonstrate that this difference between large and small systems exists already in the inelastic collapse without external drive and gravity.

  20. Instability of black hole formation in gravitational collapse

    SciTech Connect

    Joshi, Pankaj S.; Malafarina, Daniele

    2011-01-15

    We consider here the classic scenario given by Oppenheimer, Snyder, and Datt, for the gravitational collapse of a massive matter cloud, and examine its stability under the introduction of small tangential stresses. We show, by offering an explicit class of physically valid tangential stress perturbations, that an introduction of tangential pressure, however small, can qualitatively change the final fate of collapse from a black hole final state to a naked singularity. This shows instability of black hole formation in collapse and sheds important light on the nature of cosmic censorship hypothesis and its possible formulations. The key effect of these perturbations is to alter the trapped surface formation pattern within the collapsing cloud and the apparent horizon structure. This allows the singularity to be visible, and implications are discussed.

  1. Prediction of femoral head collapse in osteonecrosis.

    PubMed

    Volokh, K Y; Yoshida, H; Leali, A; Fetto, J F; Chao, E Y S

    2006-06-01

    The femoral head deteriorates in osteonecrosis. As a consequence of that, the cortical shell of the femoral head can buckle into the cancellous bone supporting it. In order to examine the buckling scenario we performed numerical analysis of a realistic femoral head model. The analysis included a solution of the hip contact problem, which provided the contact pressure distribution, and subsequent buckling simulation based on the given contact pressure. The contact problem was solved iteratively by approximating the cartilage by a discrete set of unilateral linear springs. The buckling calculations were based on a finite element mesh with brick elements for the cancellous bone and shell elements for the cortical shell. Results of 144 simulations for a variety of geometrical, material, and loading parameters strengthen the buckling scenario. They, particularly, show that the normal cancellous bone serves as a strong supporting foundation for the cortical shell and prevents it from buckling. However, under the development of osteonecrosis the deteriorating cancellous bone is unable to prevent the cortical shell from buckling and the critical pressure decreases with the decreasing Young modulus of the cancellous bone. The local buckling of the cortical shell seems to be the driving force of the progressive fracturing of the femoral head leading to its entire collapse. The buckling analysis provides an additional criterion of the femoral head collapse, the critical contact pressure. The buckling scenario also suggests a new argument in speculating on the femoral head reinforcement. If the entire collapse of the femoral head starts with the buckling of the cortical shell then it is reasonable to place the reinforcement as close to the cortical shell as possible.

  2. THERMAL AND CHEMICAL EVOLUTION OF COLLAPSING FILAMENTS

    SciTech Connect

    Gray, William J.; Scannapieco, Evan

    2013-05-10

    Intergalactic filaments form the foundation of the cosmic web that connect galaxies together, and provide an important reservoir of gas for galaxy growth and accretion. Here we present very high resolution two-dimensional simulations of the thermal and chemical evolution of such filaments, making use of a 32 species chemistry network that tracks the evolution of key molecules formed from hydrogen, oxygen, and carbon. We study the evolution of filaments over a wide range of parameters including the initial density, initial temperature, strength of the dissociating UV background, and metallicity. In low-redshift, Z Almost-Equal-To 0.1 Z{sub Sun} filaments, the evolution is determined completely by the initial cooling time. If this is sufficiently short, the center of the filament always collapses to form a dense, cold core containing a substantial fraction of molecules. In high-redshift, Z = 10{sup -3} Z{sub Sun} filaments, the collapse proceeds much more slowly. This is mostly due to the lower initial temperatures, which lead to a much more modest increase in density before the atomic cooling limit is reached, making subsequent molecular cooling much less efficient. Finally, we study how the gravitational potential from a nearby dwarf galaxy affects the collapse of the filament and compare this to NGC 5253, a nearby starbursting dwarf galaxy thought to be fueled by the accretion of filament gas. In contrast to our fiducial case, a substantial density peak forms at the center of the potential. This peak evolves faster than the rest of the filament due to the increased rate at which chemical species form and cooling occurs. We find that we achieve similar accretion rates as NGC 5253 but our two-dimensional simulations do not recover the formation of the giant molecular clouds that are seen in radio observations.

  3. Thermal and Chemical Evolution of Collapsing Filaments

    SciTech Connect

    Gray, William J.; Scannapieco, Evan

    2013-01-15

    Intergalactic filaments form the foundation of the cosmic web that connect galaxies together, and provide an important reservoir of gas for galaxy growth and accretion. Here we present very high resolution two-dimensional simulations of the thermal and chemical evolution of such filaments, making use of a 32 species chemistry network that tracks the evolution of key molecules formed from hydrogen, oxygen, and carbon. We study the evolution of filaments over a wide range of parameters including the initial density, initial temperature, strength of the dissociating UV background, and metallicity. In low-redshift, Z ≈ 0.1Z filaments, the evolution is determined completely by the initial cooling time. If this is sufficiently short, the center of the filament always collapses to form dense, cold core containing a substantial fraction of molecules. In high-redshift, Z = 10-3Z filaments, the collapse proceeds much more slowly. This is due mostly to the lower initial temperatures, which leads to a much more modest increase in density before the atomic cooling limit is reached, making subsequent molecular cooling much less efficient. Finally, we study how the gravitational potential from a nearby dwarf galaxy affects the collapse of the filament and compare this to NGC 5253, a nearby starbusting dwarf galaxy thought to be fueled by the accretion of filament gas. In contrast to our fiducial case, a substantial density peak forms at the center of the potential. This peak evolves faster than the rest of the filament due to the increased rate at which chemical species form and cooling occur. We find that we achieve similar accretion rates as NGC 5253 but our two-dimensional simulations do not recover the formation of the giant molecular clouds that are seen in radio observations.

  4. Late Cenozoic regional collapse due to evaporite flow and Dissolution in the Carbondale Collapse Center, West-Central Colorado

    USGS Publications Warehouse

    Kirkham, R.M.; Streufert, R.K.; Budahn, J.R.; Kunk, M.J.; Perry, W.J.

    2001-01-01

    Dissolution and flow of Pennsylvanian evaporitic rocks in west-central Colorado created the Carbondale Collapse Center, a 450 mi2 structural depression with about 4,000 ft of vertical collapse during the late Cenozoic. This paper describes evidence of collapse in the lower Roaring Fork River valley. Both the lateral extent and amount of vertical collapse is constrained by deformed upper Cenozoic volcanic rocks that have been correlated using field mapping, 40Ar/39Ar geochronology, geochemistry, and paleomagnetism. The Carbondale Collapse Center is one of at least two contiguous areas that have experienced major evaporite tectonism during the late Cenozoic. Historic sinkholes, deformed Holocene deposits, and modern high-salinity loads in the rivers and thermal springs indicate the collapse process continues today. Flow of evaporitic rocks is an important element in the collapse process, and during initial stages of collapse it was probably the primary causative mechanism. Dissolution, however, is the ultimate means by which evaporite is removed from the collapse area. As the Roaring Fork River began to rapidly down-cut through a broad volcanic plateau during the late Miocene, the underlying evaporite beds were subjected to differential overburden pressures. The evaporitic rocks flowed from beneath the upland areas where overburden pressures remained high, toward the Roaring Fork River Valley where the pressures were much lower. Along the valley the evaporitic rocks rose upward, sometimes as diapirs, forming or enhancing a valley anticline in bedrock and locally upwarping Pleistocene terraces. Wherever the evaporites encountered relatively fresh ground water, they were dissolved, forming underground voids into which overlying bedrock and surficial deposits subsided. The saline ground water eventually discharged to streams and rivers through thermal springs and by seepage into alluvial aquifers.

  5. Visualizing microscopic structure of simulated model basalt melt

    NASA Astrophysics Data System (ADS)

    Bohara, Bidur; Karki, Bijaya B.

    2013-08-01

    We perform a detailed visualization-based analysis of atomic-position series data for model basalt melt obtained from first-principles (quantum mechanical) molecular dynamics simulations. To gain insight into the short- and mid-range order of the melt structure, we extract and visualize the details of radial distribution function (RDF) and coordination environment. The first peaks of all partial RDFs lie in the distance range of 1.6-4 Å and the corresponding mean coordination numbers vary from less than 1 to more than 9. The coordination environments involving cations and anions differ substantially from each other, each consisting of a rich set of coordination states. These states vary both spatially and temporally: The per-atom coordination information extracted on the fly is rendered instantaneously as the spheres and polyhedra as well as along the corresponding trajectories using a color-coding scheme. The information is also visualized as clusters formed by atoms that are coordinated at different time intervals during the entire simulation. The Si-O coordination is comprised of almost all tetrahedra (4-fold) whereas the Al-O coordination includes both tetrahedra (4-fold) and pentahedra (5-fold). The animated visualization suggests that the melt structure can be viewed as a dynamic (partial) network of Al/Si-O coordination polyhedra connected via bridging oxygen in an inhomogeneous distribution of mobile magnesium and calcium atoms.

  6. Multidimensional Simulations of Filament Channel Structure and Evolution

    NASA Astrophysics Data System (ADS)

    Karpen, J. T.

    2007-10-01

    Over the past decade, the NRL Solar Theory group has made steady progress toward formulating a comprehensive model of filament-channel structure and evolution, combining the results of our sheared 3D arcade model for the magnetic field with our thermal nonequilibrium model for the cool, dense material suspended in the corona. We have also discovered that, when a sheared arcade is embedded within the global dipolar field, the resulting stressed filament channel can erupt through the mechanism of magnetic breakout. Our progress has been largely enabled by the development and implementation of state-of-the-art 1D hydrodynamic and 3D magnetohydrodynamic (MHD) codes to simulate the field-aligned plasma thermodynamics and large-scale magnetic-field evolution, respectively. Significant questions remain, however, which could be answered with the advanced observations anticipated from Solar-B. In this review, we summarize what we have learned from our simulations about the magnetic and plasma structure, evolution, and eruption of filament channels, and suggest key observational objectives for Solar-B that will test our filament-channel and CME-initiation models and augment our understanding of the underlying physical processes.

  7. LOOS: an extensible platform for the structural analysis of simulations.

    PubMed

    Romo, Tod D; Grossfield, Alan

    2009-01-01

    We have developed LOOS (Lightweight Object-Oriented Structure-analysis library) as an object-oriented library designed to facilitate the rapid development of tools for the structural analysis of simulations. LOOS supports the native file formats of most common simulation packages including AMBER, CHARMM, CNS, Gromacs, NAMD, Tinker, and X-PLOR. Encapsulation and polymorphism are used to simultaneously provide a stable interface to the programmer and make LOOS easily extensible. A rich atom selection language based on the C expression syntax is included as part of the library. LOOS enables students and casual programmer-scientists to rapidly write their own analytical tools in a compact and expressive manner resembling scripting. LOOS is written in C++ and makes extensive use of the Standard Template Library and Boost, and is freely available under the GNU General Public License (version 3) LOOS has been tested on Linux and MacOS X, but is written to be portable and should work on most Unix-based platforms. PMID:19965179

  8. DISCOS- DYNAMIC INTERACTION SIMULATION OF CONTROLS AND STRUCTURES (IBM VERSION)

    NASA Technical Reports Server (NTRS)

    Frisch, H. P.

    1994-01-01

    The Dynamic Interaction Simulation of Controls and Structure (DISCOS) program was developed for the dynamic simulation and stability analysis of passive and actively controlled spacecraft. In the use of DISCOS, the physical system undergoing analysis may be generally described as a cluster of contiguous flexible structures (bodies) that comprise a mechanical system, such as a spacecraft. The entire system (spacecraft) or portions thereof may be either spinning or nonspinning. Member bodies of the system may undergo large relative excursions, such as those of appendage deployment or rotor/ stator motion. The general system of bodies is, by its inherent nature, a feedback system in which inertial forces (such as those due to centrifugal and Coriolis acceleration) and the restoring and damping forces are motion-dependent. The system may possess a control system in which certain position and rate errors are actively controlled through the use of reaction control jets, servomotors, or momentum wheels. Bodies of the system may be interconnected by linear or nonlinear springs and dampers, by a gimbal and slider block mechanism, or by any combination of these. The DISCOS program can be used to obtain nonlinear and linearized time response of the system, interaction constant forces in the system, total system resonance properties, and frequency domain response and stability information for the system. DISCOS is probably the most powerful computational tool to date for the computer simulation of actively controlled coupled multi-flexible-body systems. The program is not easy to understand and effectively apply, but is not intended for simple problems. The DISCOS user is expected to have extensive working knowledge of rigid-body and flexible-body dynamics, finite-element techniques, numerical methods, and frequency-domain analysis. Various applications of DISCOS include simulation of the Shuttle payload deployment/retrieval mechanism, solar panel array deployment, antenna

  9. Phase space structures in gyrokinetic simulations of fusion plasma turbulence

    NASA Astrophysics Data System (ADS)

    Ghendrih, Philippe; Norscini, Claudia; Cartier-Michaud, Thomas; Dif-Pradalier, Guilhem; Abiteboul, Jérémie; Dong, Yue; Garbet, Xavier; Gürcan, Ozgür; Hennequin, Pascale; Grandgirard, Virginie; Latu, Guillaume; Morel, Pierre; Sarazin, Yanick; Storelli, Alexandre; Vermare, Laure

    2014-10-01

    Gyrokinetic simulations of fusion plasmas give extensive information in 5D on turbulence and transport. This paper highlights a few of these challenging physics in global, flux driven simulations using experimental inputs from Tore Supra shot TS45511. The electrostatic gyrokinetic code GYSELA is used for these simulations. The 3D structure of avalanches indicates that these structures propagate radially at localised toroidal angles and then expand along the field line at sound speed to form the filaments. Analysing the poloidal mode structure of the potential fluctuations (at a given toroidal location), one finds that the low modes m = 0 and m = 1 exhibit a global structure; the magnitude of the m = 0 mode is much larger than that of the m = 1 mode. The shear layers of the corrugation structures are thus found to be dominated by the m = 0 contribution, that are comparable to that of the zonal flows. This global mode seems to localise the m = 2 mode but has little effect on the localisation of the higher mode numbers. However when analysing the pulsation of the latter modes one finds that all modes exhibit a similar phase velocity, comparable to the local zonal flow velocity. The consequent dispersion like relation between the modes pulsation and the mode numbers provides a means to measure the zonal flow. Temperature fluctuations and the turbulent heat flux are localised between the corrugation structures. Temperature fluctuations are found to exhibit two scales, small fluctuations that are localised by the corrugation shear layers, and appear to bounce back and forth radially, and large fluctuations, also readily observed on the flux, which are associated to the disruption of the corrugations. The radial ballistic velocity of both avalanche events if of the order of 0.5ρ∗c0 where ρ∗ = ρ0/a, a being the tokamak minor radius and ρ0 being the characteristic Larmor radius, ρ0 = c0/Ω0. c0 is the reference ion thermal velocity and Ω0 = qiB0/mi the reference

  10. Concurrent Probabilistic Simulation of High Temperature Composite Structural Response

    NASA Technical Reports Server (NTRS)

    Abdi, Frank

    1996-01-01

    A computational structural/material analysis and design tool which would meet industry's future demand for expedience and reduced cost is presented. This unique software 'GENOA' is dedicated to parallel and high speed analysis to perform probabilistic evaluation of high temperature composite response of aerospace systems. The development is based on detailed integration and modification of diverse fields of specialized analysis techniques and mathematical models to combine their latest innovative capabilities into a commercially viable software package. The technique is specifically designed to exploit the availability of processors to perform computationally intense probabilistic analysis assessing uncertainties in structural reliability analysis and composite micromechanics. The primary objectives which were achieved in performing the development were: (1) Utilization of the power of parallel processing and static/dynamic load balancing optimization to make the complex simulation of structure, material and processing of high temperature composite affordable; (2) Computational integration and synchronization of probabilistic mathematics, structural/material mechanics and parallel computing; (3) Implementation of an innovative multi-level domain decomposition technique to identify the inherent parallelism, and increasing convergence rates through high- and low-level processor assignment; (4) Creating the framework for Portable Paralleled architecture for the machine independent Multi Instruction Multi Data, (MIMD), Single Instruction Multi Data (SIMD), hybrid and distributed workstation type of computers; and (5) Market evaluation. The results of Phase-2 effort provides a good basis for continuation and warrants Phase-3 government, and industry partnership.

  11. Structural performance of HEPA filters under simulated tornado conditions

    SciTech Connect

    Horak, H.L.; Gregory, W.S.; Ricketts, C.I.; Smith, P.R.

    1982-02-01

    This report contains the results of structural tests to determine the response of High Efficiency Particulate Air filters to simulated tornado conditions. The data include the structural limits of the filters, their resistance at high flow rates, and the effects of filter design features and tornado parameters. Considering all the filters tested, the mean break pressure or structural limit was found to be 2.35 pse (16.2 kPa). The maximum value was 2.87 psi (19.8 kPa), and the low value found was 1.31 psi (9.0 kPa). The type of failure was usually a medium break of the downstream filter fold. The type of filters that were evaluated were nuclear grade with design flow rates of 1000 cfm (0.472 m/sup 3//s), standard separators, and folded medium design. The parameters evaluated that are characteristic of the filter included manufacturer, separator type, faceguards, pack tightness, and aerosol loading. Manufacturer and medium properties were found to have a large effect on the structural limits.

  12. Solution structures of rat amylin peptide: simulation, theory, and experiment.

    PubMed

    Reddy, Allam S; Wang, Lu; Lin, Yu-Shan; Ling, Yun; Chopra, Manan; Zanni, Martin T; Skinner, James L; De Pablo, Juan J

    2010-02-01

    Amyloid deposits of amylin in the pancreas are an important characteristic feature found in patients with Type-2 diabetes. The aggregate has been considered important in the disease pathology and has been studied extensively. However, the secondary structures of the individual peptide have not been clearly identified. In this work, we present detailed solution structures of rat amylin using a combination of Monte Carlo and molecular dynamics simulations. A new Monte Carlo method is presented to determine the free energy of distinct biomolecular conformations. Both folded and random-coil conformations of rat amylin are observed in water and their relative stability is examined in detail. The former contains an alpha-helical segment comprised of residues 7-17. We find that at room temperature the folded structure is more stable, whereas at higher temperatures the random-coil structure predominates. From the configurations and weights we calculate the alpha-carbon NMR chemical shifts, with results that are in reasonable agreement with experiments of others. We also calculate the infrared spectrum in the amide I stretch regime, and the results are in fair agreement with the experimental line shape presented herein.

  13. Computational simulation of acoustic fatigue for hot composite structures

    NASA Technical Reports Server (NTRS)

    Singhal, Surendra N.; Murthy, Pappu L. N.; Chamis, Christos C.; Nagpal, Vinod K.; Sutjahjo, Edhi

    1991-01-01

    Predictive methods/computer codes for the computational simulation of acoustic fatigue resistance of hot composite structures subjected to acoustic excitation emanating from an adjacent vibrating component are discussed. Select codes developed over the past two decades at the NASA Lewis Research Center are used. The codes include computation of acoustic noise generated from a vibrating component, degradation in material properties of a composite laminate at use temperature, dynamic response of acoustically excited hot multilayered composite structure, degradation in the first ply strength of the excited structure due to acoustic loading, and acoustic fatigue resistance of the excited structure, including the propulsion environment. Effects of the laminate lay-up and environment on the acoustic fatigue life are evaluated. The results show that, by keeping the angled plies on the outer surface of the laminate, a substantial increase in the acoustic fatigue life is obtained. The effect of environment (temperature and moisture) is to relieve the residual stresses leading to an increase in the acoustic fatigue life of the excited panel.

  14. Massively Parallel Simulations of Diffusion in Dense Polymeric Structures

    SciTech Connect

    Faulon, Jean-Loup, Wilcox, R.T. , Hobbs, J.D. , Ford, D.M.

    1997-11-01

    An original computational technique to generate close-to-equilibrium dense polymeric structures is proposed. Diffusion of small gases are studied on the equilibrated structures using massively parallel molecular dynamics simulations running on the Intel Teraflops (9216 Pentium Pro processors) and Intel Paragon(1840 processors). Compared to the current state-of-the-art equilibration methods this new technique appears to be faster by some orders of magnitude.The main advantage of the technique is that one can circumvent the bottlenecks in configuration space that inhibit relaxation in molecular dynamics simulations. The technique is based on the fact that tetravalent atoms (such as carbon and silicon) fit in the center of a regular tetrahedron and that regular tetrahedrons can be used to mesh the three-dimensional space. Thus, the problem of polymer equilibration described by continuous equations in molecular dynamics is reduced to a discrete problem where solutions are approximated by simple algorithms. Practical modeling applications include the constructing of butyl rubber and ethylene-propylene-dimer-monomer (EPDM) models for oxygen and water diffusion calculations. Butyl and EPDM are used in O-ring systems and serve as sealing joints in many manufactured objects. Diffusion coefficients of small gases have been measured experimentally on both polymeric systems, and in general the diffusion coefficients in EPDM are an order of magnitude larger than in butyl. In order to better understand the diffusion phenomena, 10, 000 atoms models were generated and equilibrated for butyl and EPDM. The models were submitted to a massively parallel molecular dynamics simulation to monitor the trajectories of the diffusing species.

  15. A Structural Dynamics Approach to the Simulation of Spacecraft Control/Structure Interaction

    NASA Technical Reports Server (NTRS)

    Young, J. W.

    1985-01-01

    A relatively simple approach to the analysis of linear spacecraft control/structure interaction problems is presented. The approach uses a commercially available structural system dynamic analysis package for both controller and plant dynamics, thus obviating the need to transfer data between separate programs. The unilateral coupling between components in the control system block diagram is simulated using sparse matrix stiffness and damping elements available in the structural dynamic code. The approach is illustrated with a series of simple tutorial examples of a rigid spacecraft core with flexible appendages.

  16. Parallel adaptive fluid-structure interaction simulation of explosions impacting on building structures

    SciTech Connect

    Deiterding, Ralf; Wood, Stephen L

    2013-01-01

    We pursue a level set approach to couple an Eulerian shock-capturing fluid solver with space-time refinement to an explicit solid dynamics solver for large deformations and fracture. The coupling algorithms considering recursively finer fluid time steps as well as overlapping solver updates are discussed in detail. Our ideas are implemented in the AMROC adaptive fluid solver framework and are used for effective fluid-structure coupling to the general purpose solid dynamics code DYNA3D. Beside simulations verifying the coupled fluid-structure solver and assessing its parallel scalability, the detailed structural analysis of a reinforced concrete column under blast loading and the simulation of a prototypical blast explosion in a realistic multistory building are presented.

  17. Energy ejection in the collapse of a cold spherical self-gravitating cloud

    NASA Astrophysics Data System (ADS)

    Joyce, M.; Marcos, B.; Sylos Labini, F.

    2009-08-01

    When an open system of classical point particles interacting by Newtonian gravity collapses and relaxes violently, an arbitrary amount of energy may, in principle, be carried away by particles which escape to infinity. We investigate here, using numerical simulations, how this released energy and other related quantities (notably the binding energy and size of the virialized structure) depend on the initial conditions, for the one-parameter family of starting configurations given by randomly distributing N cold particles in a spherical volume. Previous studies have established that the minimal size reached by the system scales approximately as N1/3, a behaviour which follows trivially when the growth of perturbations (which regularize the singularity of the cold collapse in the N -> ∞ limit) is assumed to be unaffected by the boundaries. Our study shows that the energy ejected grows approximately in proportion to N1/3, while the fraction of the initial mass ejected grows only very slowly with N, approximately logarithmically, in the range of N simulated. We examine in detail the mechanism of this mass and energy ejection, showing explicitly that it arises from the interplay of the growth of perturbations with the finite size of the system. A net lag of particles compared to their uniform spherical collapse trajectories develops first at the boundaries and then propagates into the volume during the collapse. Particles in the outer shells are then ejected as they scatter through the time-dependent potential of an already re-expanding central core. Using modified initial configurations, we explore the importance of fluctuations at different scales and discreteness (i.e. non-Vlasov) effects in the dynamics.

  18. Phase Transitions and Gravitational Collapse

    NASA Astrophysics Data System (ADS)

    Gentile, Nicholas A.

    1994-01-01

    Results are presented for numerical calculations of gravitational collapses and explosions. Two effects are studied. The first involves aspects of the numerical models used in almost all current gravitational collapse calculations. The second involves phase transitions in the equation of state of dense matter. A (1+1) dimensional general relativistic hydrodynamics code was constructed to investigate both effects. A modification of standard artificial viscosity methods was developed. This extended both the tensor artificial viscosity formulation and the artificial heat conduction formulation to the general relativistic regime. This method shows better results for collapse calculations than the standard scalar artificial viscosity. Numerical collapse calculations were also examined with respect to the number of zones used in the model. These calculations suggest that the number of zones used in current supernova calculations may be insufficient, and that the more sophisticated artificial viscosity methods used may be useful in future core collapse investigations. The second effect studied by this thesis is the impact of phase transitions in dense matter on the results of core collapse in Type 2 supernovae. Two different phase transitions were investigated. The QCD phase transition embodies the prediction of quantum chromodynamics that at high density the constituents of baryonic matter will be free quarks and gluons. The effects on the shock wave formed by core collapse and bounce is studied for various phase transitions. We find that some of the phase transitions modeled significantly increase the shock strength. The second phase transition we study is one from a normal hadronic gas to Q matter. Q matter is a phase of dense baryonic matter that is motivated by soliton models for the nucleus. It has been used to model zero temperature dense matter in static stellar objects, here we extend it to finite temperature, determine the phase transitions with hadronic matter

  19. GRAVITATIONAL WAVES FROM STELLAR COLLAPSE

    SciTech Connect

    C. L. FRYER

    2001-01-01

    Stellar core-collapse plays an important role in nearly all facets of astronomy: cosmology (as standard candles), formation of compact objects, nucleosynthesis and energy deposition in galaxies. In addition, they release energy in powerful explosions of light over a range of energies, neutrinos, and the subject of this meeting, gravitational waves. Because of this broad range of importance, astronomers have discovered a number of constraints which can be used to help them understand the importance of stellar core-collapse as gravitational wave sources.

  20. Tyrosine Aminotransferase: Biochemical and Structural Properties and Molecular Dynamics Simulations

    SciTech Connect

    P Mehere; Q Han; J Lemkul; C Vavricka; H Robinson; D Bevan; J Li

    2011-12-31

    Tyrosine aminotransferase (TAT) catalyzes the transamination of tyrosine and other aromatic amino acids. The enzyme is thought to play a role in tyrosinemia type II, hepatitis and hepatic carcinoma recovery. The objective of this study is to investigate its biochemical and structural characteristics and substrate specificity in order to provide insight regarding its involvement in these diseases. Mouse TAT (mTAT) was cloned from a mouse cDNA library, and its recombinant protein was produced using Escherichia coli cells and purified using various chromatographic techniques. The recombinant mTAT is able to catalyze the transamination of tyrosine using {alpha}-ketoglutaric acid as an amino group acceptor at neutral pH. The enzyme also can use glutamate and phenylalanine as amino group donors and p-hydroxy-phenylpyruvate, phenylpyruvate and alpha-ketocaproic acid as amino group acceptors. Through macromolecular crystallography we have determined the mTAT crystal structure at 2.9 {angstrom} resolution. The crystal structure revealed the interaction between the pyridoxal-5'-phosphate cofactor and the enzyme, as well as the formation of a disulphide bond. The detection of disulphide bond provides some rational explanation regarding previously observed TAT inactivation under oxidative conditions and reactivation of the inactive TAT in the presence of a reducing agent. Molecular dynamics simulations using the crystal structures of Trypanosoma cruzi TAT and human TAT provided further insight regarding the substrate-enzyme interactions and substrate specificity. The biochemical and structural properties of TAT and the binding of its cofactor and the substrate may help in elucidation of the mechanism of TAT inhibition and activation.

  1. Tyrosine aminotransferase: biochemical and structural properties and molecular dynamics simulations

    SciTech Connect

    Mehere, P.; Robinson, H.; Han, Q.; Lemkul, J. A.; Vavricka, C. J.; Bevan, D. R.; Li, J.

    2010-11-01

    Tyrosine aminotransferase (TAT) catalyzes the transamination of tyrosine and other aromatic amino acids. The enzyme is thought to play a role in tyrosinemia type II, hepatitis and hepatic carcinoma recovery. The objective of this study is to investigate its biochemical and structural characteristics and substrate specificity in order to provide insight regarding its involvement in these diseases. Mouse TAT (mTAT) was cloned from a mouse cDNA library, and its recombinant protein was produced using Escherichia coli cells and purified using various chromatographic techniques. The recombinant mTAT is able to catalyze the transamination of tyrosine using {alpha}-ketoglutaric acid as an amino group acceptor at neutral pH. The enzyme also can use glutamate and phenylalanine as amino group donors and p-hydroxy-phenylpyruvate, phenylpyruvate and alpha-ketocaproic acid as amino group acceptors. Through macromolecular crystallography we have determined the mTAT crystal structure at 2.9 {angstrom} resolution. The crystal structure revealed the interaction between the pyridoxal-5'-phosphate cofactor and the enzyme, as well as the formation of a disulphide bond. The detection of disulphide bond provides some rational explanation regarding previously observed TAT inactivation under oxidative conditions and reactivation of the inactive TAT in the presence of a reducing agent. Molecular dynamics simulations using the crystal structures of Trypanosoma cruzi TAT and human TAT provided further insight regarding the substrate-enzyme interactions and substrate specificity. The biochemical and structural properties of TAT and the binding of its cofactor and the substrate may help in elucidation of the mechanism of TAT inhibition and activation.

  2. Tyrosine aminotransferase: biochemical and structural properties and molecular dynamics simulations.

    PubMed

    Mehere, Prajwalini; Han, Qian; Lemkul, Justin A; Vavricka, Christopher J; Robinson, Howard; Bevan, David R; Li, Jianyong

    2010-11-01

    Tyrosine aminotransferase (TAT) catalyzes the transamination of tyrosine and other aromatic amino acids. The enzyme is thought to play a role in tyrosinemia type II, hepatitis and hepatic carcinoma recovery. The objective of this study is to investigate its biochemical and structural characteristics and substrate specificity in order to provide insight regarding its involvement in these diseases. Mouse TAT (mTAT) was cloned from a mouse cDNA library, and its recombinant protein was produced using Escherichia coli cells and purified using various chromatographic techniques. The recombinant mTAT is able to catalyze the transamination of tyrosine using α-ketoglutaric acid as an amino group acceptor at neutral pH. The enzyme also can use glutamate and phenylalanine as amino group donors and p-hydroxy-phenylpyruvate, phenylpyruvate and alpha-ketocaproic acid as amino group acceptors. Through macromolecular crystallography we have determined the mTAT crystal structure at 2.9 Å resolution. The crystal structure revealed the interaction between the pyridoxal-5'-phosphate cofactor and the enzyme, as well as the formation of a disulphide bond. The detection of disulphide bond provides some rational explanation regarding previously observed TAT inactivation under oxidative conditions and reactivation of the inactive TAT in the presence of a reducing agent. Molecular dynamics simulations using the crystal structures of Trypanosoma cruzi TAT and human TAT provided further insight regarding the substrate-enzyme interactions and substrate specificity. The biochemical and structural properties of TAT and the binding of its cofactor and the substrate may help in elucidation of the mechanism of TAT inhibition and activation.

  3. Observing the Origins of Galaxy Structure in the Illustris Simulation

    NASA Astrophysics Data System (ADS)

    Snyder, Greg

    2014-10-01

    Many processes affect the appearance of galaxies, and it has recently become possible to predict how these processes set internal galaxy structure in significant populations. Such calculations are poised to clarify the physics of star formation quenching, the cosmological formation of bulges and disks, and the observability of galaxy mergers. To advance these goals, we propose to build and analyze a very large set of mock HST images based on the Illustris Project. This accurate continuous-volume hydrodynamical simulation formed thousands of structurally diverse Milky Way-mass galaxies in {106.5 Mpc}^3 with detail comparable to the resolution of HST at many cosmic times. We will mock-observe 41,000 model galaxies at 0 < z < 5 in broadband filters used by ACS, WFC3, and JWST/NIRCAM, and measure automated morphology diagnostics from each image. This will constitute a timely and effective tool to advance two key goals of observational cosmology with HST: linking the building blocks of galaxies across cosmic time, and understanding the implications of galaxy morphology and structure. It will allow us to study the emergence of the Hubble Sequence, estimate merger rates and consequences, and interpret star formation patterns in distant galaxies. Therefore this model dataset is ideally suited to enhance results from HST Treasury and Archival Legacy surveys, the Ultra Deep Fields, and Frontier Fields. To increase the science return, we will publicly release our model images and morphology catalogs, providing a tool that can directly link physical mechanisms to high redshift galaxy data.

  4. Structural performance of HEPA filters under simulated tornado conditions

    NASA Astrophysics Data System (ADS)

    Horak, H. L.; Gregory, W. S.; Ricketts, C. I.; Smith, P. R.

    1982-02-01

    The response of high efficiency particulate air filters to simulated tornado conditions was determined. The data include the structural limits of the filters, their resistance at high flow rates, and the effects of filter design features and tornado parameters. Considering all the filters tested, the mean break pressure or structural limit was found to be 2.35 pse (16.2 kPa). The maximum value was 2.87 psi (19.8 kPa), and the low value found was 1.31 psi (9.0 kPa). The type of failure was usually a medium break of the downstream filter fold. The types of filters that were evaluated were nuclear grade with design flow rates of 1000 cfm (0.472 cu m/s), standard separators, and folded medium design. The parameters evaluated that are characteristic of the filter included manufacturer, separator type, face-guards, pack tightness, and aerosol loading. Manufacturer and medium properties were found to have a large effect on the structural limits.

  5. Excision technique in constrained formulations of Einstein equations: collapse scenario

    NASA Astrophysics Data System (ADS)

    Cordero-Carrión, I.; Vasset, N.; Novak, J.; Jaramillo, J. L.

    2015-04-01

    We present a new excision technique used in constrained formulations of Einstein equations to deal with black hole in numerical simulations. We show the applicability of this scheme in several scenarios. In particular, we present the dynamical evolution of the collapse of a neutron star to a black hole, using the CoCoNuT code and this excision technique.

  6. Sinkholes, collapse structures and large landslides in an active salt dome submerged by a reservoir: The unique case of the Ambal ridge in the Karun River, Zagros Mountains, Iran

    NASA Astrophysics Data System (ADS)

    Gutiérrez, Francisco; Lizaga, Iván

    2016-02-01

    Ambal ridge, covering 4 km2, is a salt pillow of Gachsaran Formation with significant salt exposures in direct contact with the Karun River, Zagros Mountains. The highly cavernous salt dome is currently being flooded by the Gotvand Reservoir, second largest in Iran. Geomorphic evidence, including the sharp deflection of the Karun River and defeated streams indicate that Ambal is an active halokinetic structure, probably driven by erosional unloading. Around 30% of the salt dome is affected by large landslides up to ca. 50 × 106 m3 in volume. Slope oversteepening related to fluvial erosion and halokinetic rise seems to be the main controlling factor. A total of 693 sinkholes have been inventoried (170 sinkholes/km2), for which a scaling relationship has been produced. The depressions occur preferentially along a belt with a high degree of clustering. This spatial distribution is controlled by the proximity to the river, slope gradient and halite content in the bedrock. A large compound depression whose bottom lies below the normal maximum level of the reservoir will likely be flooded by water table rise forming a lake. The impoundment of the reservoir has induced peculiar collapse structures 220-280 m across, expressed by systems of arcuate fissures and scarps. Rapid subsurface salt dissolution is expected to generate and reactivate a large number of sinkholes and may reactivate landslides with a significant vertical component due to lack of basal support.

  7. Solid-solid collapse transition in a two dimensional model molecular system.

    PubMed

    Singh, Rakesh S; Bagchi, Biman

    2013-11-21

    Solid-solid collapse transition in open framework structures is ubiquitous in nature. The real difficulty in understanding detailed microscopic aspects of such transitions in molecular systems arises from the interplay between different energy and length scales involved in molecular systems, often mediated through a solvent. In this work we employ Monte-Carlo simulation to study the collapse transition in a model molecular system interacting via both isotropic as well as anisotropic interactions having different length and energy scales. The model we use is known as Mercedes-Benz (MB), which, for a specific set of parameters, sustains two solid phases: honeycomb and oblique. In order to study the temperature induced collapse transition, we start with a metastable honeycomb solid and induce transition by increasing temperature. High density oblique solid so formed has two characteristic length scales corresponding to isotropic and anisotropic parts of interaction potential. Contrary to the common belief and classical nucleation theory, interestingly, we find linear strip-like nucleating clusters having significantly different order and average coordination number than the bulk stable phase. In the early stage of growth, the cluster grows as a linear strip, followed by branched and ring-like strips. The geometry of growing cluster is a consequence of the delicate balance between two types of interactions, which enables the dominance of stabilizing energy over destabilizing surface energy. The nucleus of stable oblique phase is wetted by intermediate order particles, which minimizes the surface free energy. In the case of pressure induced transition at low temperature the collapsed state is a disordered solid. The disordered solid phase has diverse local quasi-stable structures along with oblique-solid like domains.

  8. Solid-solid collapse transition in a two dimensional model molecular system

    NASA Astrophysics Data System (ADS)

    Singh, Rakesh S.; Bagchi, Biman

    2013-11-01

    Solid-solid collapse transition in open framework structures is ubiquitous in nature. The real difficulty in understanding detailed microscopic aspects of such transitions in molecular systems arises from the interplay between different energy and length scales involved in molecular systems, often mediated through a solvent. In this work we employ Monte-Carlo simulation to study the collapse transition in a model molecular system interacting via both isotropic as well as anisotropic interactions having different length and energy scales. The model we use is known as Mercedes-Benz (MB), which, for a specific set of parameters, sustains two solid phases: honeycomb and oblique. In order to study the temperature induced collapse transition, we start with a metastable honeycomb solid and induce transition by increasing temperature. High density oblique solid so formed has two characteristic length scales corresponding to isotropic and anisotropic parts of interaction potential. Contrary to the common belief and classical nucleation theory, interestingly, we find linear strip-like nucleating clusters having significantly different order and average coordination number than the bulk stable phase. In the early stage of growth, the cluster grows as a linear strip, followed by branched and ring-like strips. The geometry of growing cluster is a consequence of the delicate balance between two types of interactions, which enables the dominance of stabilizing energy over destabilizing surface energy. The nucleus of stable oblique phase is wetted by intermediate order particles, which minimizes the surface free energy. In the case of pressure induced transition at low temperature the collapsed state is a disordered solid. The disordered solid phase has diverse local quasi-stable structures along with oblique-solid like domains.

  9. Solid-solid collapse transition in a two dimensional model molecular system.

    PubMed

    Singh, Rakesh S; Bagchi, Biman

    2013-11-21

    Solid-solid collapse transition in open framework structures is ubiquitous in nature. The real difficulty in understanding detailed microscopic aspects of such transitions in molecular systems arises from the interplay between different energy and length scales involved in molecular systems, often mediated through a solvent. In this work we employ Monte-Carlo simulation to study the collapse transition in a model molecular system interacting via both isotropic as well as anisotropic interactions having different length and energy scales. The model we use is known as Mercedes-Benz (MB), which, for a specific set of parameters, sustains two solid phases: honeycomb and oblique. In order to study the temperature induced collapse transition, we start with a metastable honeycomb solid and induce transition by increasing temperature. High density oblique solid so formed has two characteristic length scales corresponding to isotropic and anisotropic parts of interaction potential. Contrary to the common belief and classical nucleation theory, interestingly, we find linear strip-like nucleating clusters having significantly different order and average coordination number than the bulk stable phase. In the early stage of growth, the cluster grows as a linear strip, followed by branched and ring-like strips. The geometry of growing cluster is a consequence of the delicate balance between two types of interactions, which enables the dominance of stabilizing energy over destabilizing surface energy. The nucleus of stable oblique phase is wetted by intermediate order particles, which minimizes the surface free energy. In the case of pressure induced transition at low temperature the collapsed state is a disordered solid. The disordered solid phase has diverse local quasi-stable structures along with oblique-solid like domains. PMID:24320339

  10. Probabilistic simulation of the human factor in structural reliability

    NASA Technical Reports Server (NTRS)

    Chamis, C. C.

    1993-01-01

    A formal approach is described in an attempt to computationally simulate the probable ranges of uncertainties of the human factor in structural probabilistic assessments. A multi-factor interaction equation (MFIE) model has been adopted for this purpose. Human factors such as marital status, professional status, home life, job satisfaction, work load and health, are considered to demonstrate the concept. Parametric studies in conjunction with judgment are used to select reasonable values for the participating factors (primitive variables). Suitability of the MFIE in the subsequently probabilistic sensitivity studies are performed to assess the validity of the whole approach. Results obtained show that the uncertainties for no error range from five to thirty percent for the most optimistic case.

  11. Biopolymer structure simulation and optimization via fragment regrowth Monte Carlo.

    PubMed

    Zhang, Jinfeng; Kou, S C; Liu, Jun S

    2007-06-14

    An efficient exploration of the configuration space of a biopolymer is essential for its structure modeling and prediction. In this study, the authors propose a new Monte Carlo method, fragment regrowth via energy-guided sequential sampling (FRESS), which incorporates the idea of multigrid Monte Carlo into the framework of configurational-bias Monte Carlo and is suitable for chain polymer simulations. As a by-product, the authors also found a novel extension of the Metropolis Monte Carlo framework applicable to all Monte Carlo computations. They tested FRESS on hydrophobic-hydrophilic (HP) protein folding models in both two and three dimensions. For the benchmark sequences, FRESS not only found all the minimum energies obtained by previous studies with substantially less computation time but also found new lower energies for all the three-dimensional HP models with sequence length longer than 80 residues.

  12. Structuring and sampling complex conformation space: Weighted ensemble dynamics simulations.

    PubMed

    Gong, Linchen; Zhou, Xin

    2009-08-01

    Based on multiple simulation trajectories, which started from dispersively selected initial conformations, the weighted ensemble dynamics method is designed to robustly and systematically explore the hierarchical structure of complex conformational space through the spectral analysis of the variance-covariance matrix of trajectory-mapped vectors. The nondegenerate ground state of the matrix directly predicts the ergodicity of simulation data. The ground state could be adopted as statistical weights of trajectories to correctly reconstruct the equilibrium properties, even though each trajectory only explores part of the conformational space. Otherwise, the degree of degeneracy simply gives the number of metastable states of the system under the time scale of individual trajectory. Manipulation on the eigenvectors leads to the classification of trajectories into nontransition ones within the states and transition ones between them. The transition states may also be predicted without a priori knowledge of the system. We demonstrate the application of the general method both to the system with a one-dimensional glassy potential and with the one of alanine dipeptide in explicit solvent.

  13. Structuring and sampling complex conformation space: Weighted ensemble dynamics simulations

    NASA Astrophysics Data System (ADS)

    Gong, Linchen; Zhou, Xin

    2009-08-01

    Based on multiple simulation trajectories, which started from dispersively selected initial conformations, the weighted ensemble dynamics method is designed to robustly and systematically explore the hierarchical structure of complex conformational space through the spectral analysis of the variance-covariance matrix of trajectory-mapped vectors. The nondegenerate ground state of the matrix directly predicts the ergodicity of simulation data. The ground state could be adopted as statistical weights of trajectories to correctly reconstruct the equilibrium properties, even though each trajectory only explores part of the conformational space. Otherwise, the degree of degeneracy simply gives the number of metastable states of the system under the time scale of individual trajectory. Manipulation on the eigenvectors leads to the classification of trajectories into nontransition ones within the states and transition ones between them. The transition states may also be predicted without a priori knowledge of the system. We demonstrate the application of the general method both to the system with a one-dimensional glassy potential and with the one of alanine dipeptide in explicit solvent.

  14. Development and mechanical properties of structural materials from lunar simulant

    NASA Technical Reports Server (NTRS)

    Desai, Chandra S.

    1991-01-01

    Development of versatile engineering materials from locally available materials in space is an important step toward establishment of outposts such as on the moon and Mars. Here development of the technologies for manufacture of structural and construction materials on the moon, utilizing local lunar soil (regolith), without the use of water, is an important element for habitats and explorations in space. It is also vital that the mechanical behavior such as strength and flexural properties, fracture toughness, ductility, and deformation characteristics are defined toward establishment of the ranges of engineering applications of the materials developed. The objectives include two areas: (1) thermal liquefaction of lunar simulant (at about 1100 C) with different additives (fibers, powders, etc.); and (2) development and use of a traxial test device in which lunar simulants are first compacted under cycles of loading, and then tested with different vacuums and initial confining or insitu stress. The second area was described in previous progress reports and publications; since the presently available device allows vacuum levels up to only 10(exp -4) torr, it is recommended that a vacuum pump that can allow higher levels of vacuum is acquired.

  15. Structural, Physical, and Compositional Analysis of Lunar Simulants and Regolith

    NASA Technical Reports Server (NTRS)

    Greenberg, Paul; Street, Kenneth W.; Gaier, James

    2008-01-01

    Relative to the prior manned Apollo and unmanned robotic missions, planned Lunar initiatives are comparatively complex and longer in duration. Individual crew rotations are envisioned to span several months, and various surface systems must function in the Lunar environment for periods of years. As a consequence, an increased understanding of the surface environment is required to engineer and test the associated materials, components, and systems necessary to sustain human habitation and surface operations. The effort described here concerns the analysis of existing simulant materials, with application to Lunar return samples. The interplay between these analyses fulfills the objective of ascertaining the critical properties of regolith itself, and the parallel objective of developing suitable stimulant materials for a variety of engineering applications. Presented here are measurements of the basic physical attributes, i.e. particle size distributions and general shape factors. Also discussed are structural and chemical properties, as determined through a variety of techniques, such as optical microscopy, SEM and TEM microscopy, Mossbauer Spectroscopy, X-ray diffraction, Raman microspectroscopy, inductively coupled argon plasma emission spectroscopy and energy dispersive X-ray fluorescence mapping. A comparative description of currently available stimulant materials is discussed, with implications for more detailed analyses, as well as the requirements for continued refinement of methods for simulant production.

  16. Linking Microbial Community Structure to Function in Representative Simulated Systems

    PubMed Central

    Marcus, Ian M.; Wilder, Hailey A.; Quazi, Shanin J.

    2013-01-01

    Pathogenic bacteria are generally studied as a single strain under ideal growing conditions, although these conditions are not the norm in the environments in which pathogens typically proliferate. In this investigation, a representative microbial community along with Escherichia coli O157:H7, a model pathogen, was studied in three environments in which such a pathogen could be found: a human colon, a septic tank, and groundwater. Each of these systems was built in the lab in order to retain the physical/chemical and microbial complexity of the environments while maintaining control of the feed into the models. The microbial community in the colon was found to have a high percentage of bacteriodetes and firmicutes, while the septic tank and groundwater systems were composed mostly of proteobacteria. The introduction of E. coli O157:H7 into the simulated systems elicited a shift in the structures and phenotypic cell characteristics of the microbial communities. The fate and transport of the microbial community with E. coli O157:H7 were found to be significantly different from those of E. coli O157:H7 studied as a single isolate, suggesting that the behavior of the organism in the environment was different from that previously conceived. The findings in this study clearly suggest that to gain insight into the fate of pathogens, cells should be grown and analyzed under conditions simulating those of the environment in which the pathogens are present. PMID:23396331

  17. Inspection of collapse cause of Sampoong Department Store.

    PubMed

    Park, Tae Won

    2012-04-10

    On June 29, 1995, the Sampoong Department Store in Seoul, South Korea, completely collapsed. It was a five story reinforced concrete (RC) building with underground 4 floors and was built using a technique called "flat slab construction". The collapse is the largest peacetime disaster in South Korean history - 502 people died, 6 missing, and 937 sustained injuries. The Sampoong Department Store was completed in late 1989, and it opened to the public on July 7, 1990, attracting an estimated 40,000 people per day during the building's 5 years in service. After the collapse, intense investigation was conducted to find out the direct causes of the collapse through (1) survey on the present collapse situation and ground condition, (2) strength test of the concrete and steel collected at the site, (3) design documents and construction/management reports, and (4) structural analysis. The investigation revealed that the Sampoong Department Store collapsed because so many direct and indirect causes such as flaws in design phase and mistakes in construction and management process were overlapped.

  18. Thermal duality and gravitational collapse

    NASA Astrophysics Data System (ADS)

    Hewitt, Michael

    2015-07-01

    Thermal duality is a relationship between the behaviour of heterotic string models of the E(8)×E(8) or SO(32) types at inversely related temperatures, a variant of T duality in the Euclidean regime. This duality would have consequences for the nature of the Hagedorn transition in these string models. We propose that the vacuum admits a family of deformations in situations where there are closed surfaces of constant area but high radial acceleration (a string regularized version of a Penrose trapped surface), such as would be formed in situations of extreme gravitational collapse. This would allow a radical resolution of the firewall paradox by allowing quantum effects to significantly modify the spacetime geometry around a collapsed object. A string bremsstrahlung process would convert the kinetic energy of infalling matter in extreme gravitational collapse to form a region of the deformed vacuum, which would be equivalent to forming a high temperature string phase. A heuristic criterion for the conversion process is presented, relating Newtonian gravity to the string tension, suggesting an upper limit to the strength of the gravitational interaction. This conversion process might have observable consequences for charged particles falling into a rotating collapsed object by producing high energy particles via a variant of the Penrose process.

  19. Chemotactic collapse and mesenchymal morphogenesis

    NASA Astrophysics Data System (ADS)

    Escudero, Carlos

    2005-08-01

    We study the effect of chemotactic signaling among mesenchymal cells. We show that the particular physiology of the mesenchymal cells allows one-dimensional collapse in contrast to the case of bacteria, and that the mesenchymal morphogenesis represents thus a more complex type of pattern formation than those found in bacterial colonies. We compare our theoretical predictions with recent in vitro experiments.

  20. Colony collapse disorder in Europe.

    PubMed

    Dainat, Benjamin; Vanengelsdorp, Dennis; Neumann, Peter

    2012-02-01

    Colony collapse disorder (CCD) is a condition of honey bees, which has contributed in part to the recent major losses of honey bee colonies in the USA. Here we report the first CCD case from outside of the USA. We suggest that more standardization is needed for the case definition to diagnose CCD and to compare data on a global scale.

  1. DISCOS- DYNAMIC INTERACTION SIMULATION OF CONTROLS AND STRUCTURES (IBM VERSION)

    NASA Technical Reports Server (NTRS)

    Frisch, H. P.

    1994-01-01

    The Dynamic Interaction Simulation of Controls and Structure (DISCOS) program was developed for the dynamic simulation and stability analysis of passive and actively controlled spacecraft. In the use of DISCOS, the physical system undergoing analysis may be generally described as a cluster of contiguous flexible structures (bodies) that comprise a mechanical system, such as a spacecraft. The entire system (spacecraft) or portions thereof may be either spinning or nonspinning. Member bodies of the system may undergo large relative excursions, such as those of appendage deployment or rotor/ stator motion. The general system of bodies is, by its inherent nature, a feedback system in which inertial forces (such as those due to centrifugal and Coriolis acceleration) and the restoring and damping forces are motion-dependent. The system may possess a control system in which certain position and rate errors are actively controlled through the use of reaction control jets, servomotors, or momentum wheels. Bodies of the system may be interconnected by linear or nonlinear springs and dampers, by a gimbal and slider block mechanism, or by any combination of these. The DISCOS program can be used to obtain nonlinear and linearized time response of the system, interaction constant forces in the system, total system resonance properties, and frequency domain response and stability information for the system. DISCOS is probably the most powerful computational tool to date for the computer simulation of actively controlled coupled multi-flexible-body systems. The program is not easy to understand and effectively apply, but is not intended for simple problems. The DISCOS user is expected to have extensive working knowledge of rigid-body and flexible-body dynamics, finite-element techniques, numerical methods, and frequency-domain analysis. Various applications of DISCOS include simulation of the Shuttle payload deployment/retrieval mechanism, solar panel array deployment, antenna

  2. Testing simulation and structural models with applications to energy demand

    NASA Astrophysics Data System (ADS)

    Wolff, Hendrik

    2007-12-01

    This dissertation deals with energy demand and consists of two parts. Part one proposes a unified econometric framework for modeling energy demand and examples illustrate the benefits of the technique by estimating the elasticity of substitution between energy and capital. Part two assesses the energy conservation policy of Daylight Saving Time and empirically tests the performance of electricity simulation. In particular, the chapter "Imposing Monotonicity and Curvature on Flexible Functional Forms" proposes an estimator for inference using structural models derived from economic theory. This is motivated by the fact that in many areas of economic analysis theory restricts the shape as well as other characteristics of functions used to represent economic constructs. Specific contributions are (a) to increase the computational speed and tractability of imposing regularity conditions, (b) to provide regularity preserving point estimates, (c) to avoid biases existent in previous applications, and (d) to illustrate the benefits of our approach via numerical simulation results. The chapter "Can We Close the Gap between the Empirical Model and Economic Theory" discusses the more fundamental question of whether the imposition of a particular theory to a dataset is justified. I propose a hypothesis test to examine whether the estimated empirical model is consistent with the assumed economic theory. Although the proposed methodology could be applied to a wide set of economic models, this is particularly relevant for estimating policy parameters that affect energy markets. This is demonstrated by estimating the Slutsky matrix and the elasticity of substitution between energy and capital, which are crucial parameters used in computable general equilibrium models analyzing energy demand and the impacts of environmental regulations. Using the Berndt and Wood dataset, I find that capital and energy are complements and that the data are significantly consistent with duality

  3. REVIVAL OF THE STALLED CORE-COLLAPSE SUPERNOVA SHOCK TRIGGERED BY PRECOLLAPSE ASPHERICITY IN THE PROGENITOR STAR

    SciTech Connect

    Couch, Sean M.; Ott, Christian D. E-mail: cott@tapir.caltech.edu

    2013-11-20

    Multi-dimensional simulations of advanced nuclear burning stages of massive stars suggest that the Si/O layers of presupernova stars harbor large deviations from the spherical symmetry typically assumed for presupernova stellar structure. We carry out three-dimensional core-collapse supernova simulations with and without aspherical velocity perturbations to assess their potential impact on the supernova hydrodynamics in the stalled-shock phase. Our results show that realistic perturbations can qualitatively alter the postbounce evolution, triggering an explosion in a model that fails to explode without them. This finding underlines the need for a multi-dimensional treatment of the presupernova stage of stellar evolution.

  4. Discontinuous molecular dynamics (DMD) study of heteropolymer collapse in an explicit solvent.

    PubMed

    Opps, Sheldon B; Rilling, Keaghan M; Polson, James M

    2013-05-01

    In this study, we employ the discontinuous molecular dynamics simulation method to investigate the collapse properties of a single heteropolymer chain in an explicit solvent. Solvent density ρ, fraction of hydrophobic monomers n H (defined as the ratio of the number of hydrophobic monomers to the total number of monomers) and a hydrophobicity parameter λ (which controls the energy mismatch between the monomers and solvent particles) were systematically varied to examine their role in polymer collapse. The average static structure factor of the polymer was used to find the so-called θ-point characterizing the state of an ideal chain. Phase diagrams of ρ versus λ for the coil-globule transition were mapped out for different values of n H. Increasing the fraction of hydrophobic monomers n H, solvent density ρ, and hydrophobicity parameter λ were all shown to aid in stabilizing the globule phase. In an effort to explore scaling behaviour of the coil-globule phase diagram as a function of n H, and to investigate whether the phase boundaries for different n H collapsed on to one universal curve, we rescaled λ by n H (δ) λ; we determined δ = 1.72, in contrast to mean-field predictions of δ = 2.0. PMID:22847233

  5. Simulating Pediatric Ventricular Assist Device Operation Using Fluid Structure Interaction

    NASA Astrophysics Data System (ADS)

    Long, Chris; Bazilevs, Yuri; Marsden, Alison

    2012-11-01

    Ventricular Assist Devices (VADs) provide mechanical circulatory support to patients in heart failure. They are primarily used to extend life until cardiac transplant, but also show promise as a ``bridge-to-recovery'' device in pediatric patients. Commercially available pediatric pumps are pulsatile displacement pumps, with two distinct chambers for air and blood separated by a thin, flexible membrane. The air chamber pneumatically drives the membrane, which drives blood through the other chamber via displacement. The primary risk factor associated with these devices is stroke or embolism due to thrombogenesis in the blood chamber, occurring in as many as 40% of patients. Our goal is to perform simulations that accurately model the hemodynamics of the device, as well as the non-linear membrane buckling. We apply a finite-element based fluid solver, with an Arbitrary Lagrangian-Eulerian (ALE) framework to account for mesh motion. Isogeometric Analysis with a Kirchhoff-Love shell formulation is used on the membrane, and two distinct fluid subdomains are used for the air and blood chambers. The Fluid Structure Interaction (FSI) problem is solved simultaneously, using a Matrix Free method to model the interactions at the fluid-structure boundary. Methods and results are presented.

  6. Atomistic Simulation and Electronic Structure of Lithium Doped Ionic Liquids: Structure, Transport, and Electrochemical Stability

    NASA Technical Reports Server (NTRS)

    Haskins, Justin B.; Bauschlicher, Charles W.; Lawson, John W.

    2015-01-01

    Zero-temperature density functional theory (DFT), density functional theory molecular dynamics (DFT-MD), and classical molecular dynamics using polarizable force fields (PFF-MD) are employed to evaluate the influence of Lithium ion on the structure, transport, and electrochemical stability of three potential ionic liquid electrolytes: N--methyl-N-butylpyrrolidinium bis(trifluoromethanesulfonyl)imide ([pyr14][TFSI]), N--methyl-N-propylpyrrolidinium bis(fluorosulfonyl)imide ([pyr13][FSI]), and 1-ethyl-3--methylimidazolium boron tetrafluoride ([EMIM][BF4]). We characterize the Lithium ion solvation shell through zero-temperature DFT simulations of [Li(Anion)sub n](exp n-1) -clusters, DFT-MD simulations of isolated lithium ions in small ionic liquid systems, and PFF-MD simulations with high Li-doping levels in large ionic liquid systems. At low levels of Li-salt doping, highly stable solvation shells having 2-3 anions are seen in both [pyr14][TFSI] and [pyr13][FSI], while solvation shells with 4 anions dominate in [EMIM][BF sub 4]. At higher levels of doping, we find the formation of complex Li-network structures that increase the frequency of 4 anion-coordinated solvation shells. A comparison of computational and experimental Raman spectra for a wide range of [Li(Anion) sub n](exp n -1) - clusters shows that our proposed structures are consistent with experiment. We estimate the ion diffusion coefficients and quantify both size and simulation time effects. We find estimates of lithium ion diffusion are a reasonable order of magnitude and can be corrected for simulation time effects. Simulation size, on the other hand, is also important, with diffusion coefficients from long PFF-MD simulations of small cells having 20-40% error compared to large-cell values. Finally, we compute the electrochemical window using differences in electronic energy levels of both isolated cation/anion pairs and small ionic liquid systems with Li-salt doping. The single pair and liquid

  7. Basic problems of digital simulation of solid rocket motor (SRM) structural reliability

    NASA Astrophysics Data System (ADS)

    Tan, Sanwu; Wang, Binxun

    1993-08-01

    Discussed are several basic problems in the digital simulation of SRM structural reliability, such as verification testing for critical components. Simulations of fiber-reinforced composite cases and SRM solid grains are presented to illustrate the general program of digital simulation for SRM structural reliability.

  8. Proposed correlation of structure network inherited from producing techniques and deformation behavior for Ni-Ti-Mo metallic glasses via atomistic simulations

    NASA Astrophysics Data System (ADS)

    Yang, M. H.; Li, J. H.; Liu, B. X.

    2016-07-01

    Based on the newly constructed n-body potential of Ni-Ti-Mo system, Molecular Dynamics and Monte Carlo simulations predict an energetically favored glass formation region and an optimal composition sub-region with the highest glass-forming ability. In order to compare the producing techniques between liquid melt quenching (LMQ) and solid-state amorphization (SSA), inherent hierarchical structure and its effect on mechanical property were clarified via atomistic simulations. It is revealed that both producing techniques exhibit no pronounced differences in the local atomic structure and mechanical behavior, while the LMQ method makes a relatively more ordered structure and a higher intrinsic strength. Meanwhile, it is found that the dominant short-order clusters of Ni-Ti-Mo metallic glasses obtained by LMQ and SSA are similar. By analyzing the structural evolution upon uniaxial tensile deformation, it is concluded that the gradual collapse of the spatial structure network is intimately correlated to the mechanical response of metallic glasses and acts as a structural signature of the initiation and propagation of shear bands.

  9. Proposed correlation of structure network inherited from producing techniques and deformation behavior for Ni-Ti-Mo metallic glasses via atomistic simulations

    PubMed Central

    Yang, M. H.; Li, J. H.; Liu, B. X.

    2016-01-01

    Based on the newly constructed n-body potential of Ni-Ti-Mo system, Molecular Dynamics and Monte Carlo simulations predict an energetically favored glass formation region and an optimal composition sub-region with the highest glass-forming ability. In order to compare the producing techniques between liquid melt quenching (LMQ) and solid-state amorphization (SSA), inherent hierarchical structure and its effect on mechanical property were clarified via atomistic simulations. It is revealed that both producing techniques exhibit no pronounced differences in the local atomic structure and mechanical behavior, while the LMQ method makes a relatively more ordered structure and a higher intrinsic strength. Meanwhile, it is found that the dominant short-order clusters of Ni-Ti-Mo metallic glasses obtained by LMQ and SSA are similar. By analyzing the structural evolution upon uniaxial tensile deformation, it is concluded that the gradual collapse of the spatial structure network is intimately correlated to the mechanical response of metallic glasses and acts as a structural signature of the initiation and propagation of shear bands. PMID:27418115

  10. Proposed correlation of structure network inherited from producing techniques and deformation behavior for Ni-Ti-Mo metallic glasses via atomistic simulations.

    PubMed

    Yang, M H; Li, J H; Liu, B X

    2016-01-01

    Based on the newly constructed n-body potential of Ni-Ti-Mo system, Molecular Dynamics and Monte Carlo simulations predict an energetically favored glass formation region and an optimal composition sub-region with the highest glass-forming ability. In order to compare the producing techniques between liquid melt quenching (LMQ) and solid-state amorphization (SSA), inherent hierarchical structure and its effect on mechanical property were clarified via atomistic simulations. It is revealed that both producing techniques exhibit no pronounced differences in the local atomic structure and mechanical behavior, while the LMQ method makes a relatively more ordered structure and a higher intrinsic strength. Meanwhile, it is found that the dominant short-order clusters of Ni-Ti-Mo metallic glasses obtained by LMQ and SSA are similar. By analyzing the structural evolution upon uniaxial tensile deformation, it is concluded that the gradual collapse of the spatial structure network is intimately correlated to the mechanical response of metallic glasses and acts as a structural signature of the initiation and propagation of shear bands. PMID:27418115

  11. Probing the structure of jet-driven core-collapse supernova and long gamma-ray burst progenitors with high-energy neutrinos

    NASA Astrophysics Data System (ADS)

    Bartos, Imre; Dasgupta, Basudeb; Márka, Szabolcs

    2012-10-01

    Times of arrival of high-energy neutrinos encode information about their sources. We demonstrate that the energy-dependence of the onset time of neutrino emission in advancing relativistic jets can be used to extract important information about the supernova/gamma-ray burst progenitor structure. We examine this energy and time dependence for different supernova and gamma-ray burst progenitors, including red and blue supergiants, helium cores, Wolf-Rayet stars, and chemically homogeneous stars, with a variety of masses and metallicities. For choked jets, we calculate the cutoff of observable neutrino energies depending on the radius at which the jet is stalled. Further, we exhibit how such energy and time dependence may be used to identify and differentiate between progenitors, with as few as one or two observed events, under favorable conditions.

  12. Sudden trust collapse in networked societies

    NASA Astrophysics Data System (ADS)

    da Gama Batista, João; Bouchaud, Jean-Philippe; Challet, Damien

    2015-03-01

    Trust is a collective, self-fulfilling phenomenon that suggests analogies with phase transitions. We introduce a stylized model for the build-up and collapse of trust in networks, which generically displays a first order transition. The basic assumption of our model is that whereas trustworthiness begets trustworthiness, panic also begets panic, in the sense that a small decrease in trustworthiness may be amplified and ultimately lead to a sudden and catastrophic drop of collective trust. We show, using both numerical simulations and mean-field analytic arguments, that there are extended regions of the parameter space where two equilibrium states coexist: a well-connected network where global confidence is high, and a poorly connected network where global confidence is low. In these coexistence regions, spontaneous jumps from the well-connected state to the poorly connected state can occur, corresponding to a sudden collapse of trust that is not caused by any major external catastrophe. In large systems, spontaneous crises are replaced by history dependence: whether the system is found in one state or in the other essentially depends on initial conditions. Finally, we document a new phase, in which agents are well connected yet distrustful.

  13. Critical Collapse of Rotating Radiation Fluids.

    PubMed

    Baumgarte, Thomas W; Gundlach, Carsten

    2016-06-01

    We present results from the first fully relativistic simulations of the critical collapse of rotating radiation fluids. We observe critical scaling both in subcritical evolutions-in which case the fluid disperses to infinity and leaves behind flat space-and in supercritical evolutions, which lead to the formation of black holes. We measure the mass and angular momentum of these black holes, and find that both show critical scaling with critical exponents that are consistent with perturbative results. The critical exponents are universal: they are not affected by angular momentum, and are independent of the direction in which the critical curve, which separates subcritical from supercritical evolutions in our two-dimensional parameter space, is crossed. In particular, these findings suggest that the angular momentum decreases more rapidly than the square of the mass, so that, as criticality is approached, the collapse leads to the formation of a nonspinning black hole. We also demonstrate excellent agreement of our numerical data with new closed-form extensions of power-law scalings that describe the mass and angular momentum of rotating black holes formed close to criticality. PMID:27314710

  14. Shear flow induced unfolding of collapsed polymers.

    NASA Astrophysics Data System (ADS)

    Alexander-Katz, Alfredo; Netz, Roland

    2006-03-01

    In the process of clotting in small vessels, platelets form a plug in an injured zone only in the presence of a protein known as the von Willebrand Factor (vWF). The absence or malfunction of the vWF leads to a bleeding disorder, the so-called von Willebrand disease. It is believed that the protein is collapsed (or globular) when released into the blood flow, and that it undergoes a transition at high shear rates that allows it to bind platelets. Using hydrodynamic simulations of a simple model of the vWF in shear flow, we show that a globular polymer undergoes a globule-stretch transition at a critical shear rate. Below this threshold shear rate the polymer remains collapsed and slightly deformed, while above it the chain displays strong elongations in the direction of the flow. Finally, we discuss the relevance of our results in the case of blood flow, and compare them to the physiological values present in the body.

  15. Critical Collapse of Rotating Radiation Fluids

    NASA Astrophysics Data System (ADS)

    Baumgarte, Thomas W.; Gundlach, Carsten

    2016-06-01

    We present results from the first fully relativistic simulations of the critical collapse of rotating radiation fluids. We observe critical scaling both in subcritical evolutions—in which case the fluid disperses to infinity and leaves behind flat space—and in supercritical evolutions, which lead to the formation of black holes. We measure the mass and angular momentum of these black holes, and find that both show critical scaling with critical exponents that are consistent with perturbative results. The critical exponents are universal: they are not affected by angular momentum, and are independent of the direction in which the critical curve, which separates subcritical from supercritical evolutions in our two-dimensional parameter space, is crossed. In particular, these findings suggest that the angular momentum decreases more rapidly than the square of the mass, so that, as criticality is approached, the collapse leads to the formation of a nonspinning black hole. We also demonstrate excellent agreement of our numerical data with new closed-form extensions of power-law scalings that describe the mass and angular momentum of rotating black holes formed close to criticality.

  16. Cosmic-ray ionisation in collapsing clouds

    NASA Astrophysics Data System (ADS)

    Padovani, M.; Hennebelle, P.; Galli, D.

    2013-12-01

    Context. Cosmic rays play an important role in dense molecular cores, affecting their thermal and dynamical evolution and initiating the chemistry. Several studies have shown that the formation of protostellar discs in collapsing clouds is severely hampered by the braking torque exerted by the entrained magnetic field on the infalling gas, as long as the field remains frozen to the gas. Aims: In this paper we examine the possibility that the concentration and twisting of the field lines in the inner region of collapse can produce a significant reduction of the ionisation fraction. Methods: To check whether the cosmic-ray ionisation rate can fall below the critical value required to maintain good coupling, we first study the propagation of cosmic rays in a model of a static magnetised cloud varying the relative strength of the toroidal/poloidal components and the mass-to-flux ratio. We then follow the path of cosmic rays using realistic magnetic field configurations generated by numerical simulations of a rotating collapsing core with different initial conditions. Results: We find that an increment of the toroidal component of the magnetic field, or, in general, a more twisted configuration of the field lines, results in a decrease in the cosmic-ray flux. This is mainly due to the magnetic mirroring effect that is stronger where larger variations in the field direction are present. In particular, we find a decrease of the cosmic-ray ionisation rate below 10-18 s-1 in the central 300-400 AU, where density is higher than about 109 cm-3. This very low value of the ionisation rate is attained in the cases of intermediate and low magnetisation (mass-to-flux ratio λ = 5 and 17, respectively) and for toroidal fields larger than about 40% of the total field. Conclusions: Magnetic field effects can significantly reduce the ionisation fraction in collapsing clouds. We provide a handy fitting formula to compute approximately the attenuation of the cosmic-ray ionisation rate

  17. Cluster coarsening during polymer collapse: Finite-size scaling analysis

    NASA Astrophysics Data System (ADS)

    Majumder, Suman; Janke, Wolfhard

    2015-06-01

    We study the kinetics of the collapse of a single flexible polymer when it is quenched from a good solvent to a poor solvent. Results obtained from Monte Carlo simulations show that the collapse occurs through a sequence of events with the formation, growth and subsequent coalescence of clusters of monomers to a single compact globule. Particular emphasis is given in this work to the cluster growth during the collapse, analyzed via the application of finite-size scaling techniques. The growth exponent obtained in our analysis is suggestive of the universal Lifshitz-Slyozov mechanism of cluster growth. The methods used in this work could be of more general validity and applicable to other phenomena such as protein folding.

  18. Collapse of magnetized hypermassive neutron stars in general relativity.

    PubMed

    Duez, Matthew D; Liu, Yuk Tung; Shapiro, Stuart L; Shibata, Masaru; Stephens, Branson C

    2006-01-27

    Hypermassive neutron stars (HMNSs)--equilibrium configurations supported against collapse by rapid differential rotation--are possible transient remnants of binary neutron-star mergers. Using newly developed codes for magnetohydrodynamic simulations in dynamical spacetimes, we are able to track the evolution of a magnetized HMNS in full general relativity for the first time. We find that secular angular momentum transport due to magnetic braking and the magnetorotational instability results in the collapse of an HMNS to a rotating black hole, accompanied by a gravitational wave burst. The nascent black hole is surrounded by a hot, massive torus undergoing quasistationary accretion and a collimated magnetic field. This scenario suggests that HMNS collapse is a possible candidate for the central engine of short gamma-ray bursts.

  19. orbital selective correlation reduce in collapse tetragonal phase of CaFe2(As0.935P0.065)2 and electronic structure reconstruction studied by angel resolved photoemission spectroscopy

    NASA Astrophysics Data System (ADS)

    Zeng, Lingkun

    We performed an angle-resolved photoemission spectroscopy (ARPES) study of the CaFe2(As0.935P0.065)2 in the collapse tetragonal(CT) phase and uncollapse tetragonal(UCT) phase. We find in the CT phase the electronic correlation dramatically reduces respective to UCT phase. Meanwhile, the reduction of correlation in CT phase show an orbital selective effect: correlation in dxy reduces the most, and then dxz/yz, while the one in dz2-r2 almost keeps the same. In CT phase, almost all bands sink downwards to higher binding energy, leading to the hole like bands around Brillouin zone(BZ) center sink below EF compared with UCT phase. However, the electron pocket around Brillouin Zone(BZ) corner(M) in UCT phase, forms a hole pocket around BZ center(Z point) in CT phase. Moreover, the dxy exhibits larger movement down to higher binding energy, resulting in farther away from dyz/xz and closer to dxy.We propose the electron filling ,namely high spin state in UCT phase to low spin state in CT phase(due to competing between crystal structure field and Hund's coupling), other than the Fermi surface nesting might be responsible for the absent of magnetic ordering.

  20. Kiloparsec-Scale Simulations of Star Formation in Disk Galaxies III. Structure and Dynamics of Filaments and Clumps in Giant Molecular Clouds

    NASA Astrophysics Data System (ADS)

    Butler, Michael J.; Tan, Jonathan C.; Van Loo, Sven

    2015-05-01

    We present hydrodynamic simulations of self-gravitating dense gas in a galactic disk, exploring scales ranging from 1 kpc down to ˜0.1 pc. Our primary goal is to understand how dense filaments form in giant molecular clouds (GMCs). These structures, often observed as infrared dark clouds (IRDCs) in the Galactic plane, are thought to be the precursors to massive stars and star clusters, so their formation may be the rate-limiting step controlling global star formation rates in galactic systems as described by the Kennicutt-Schmidt relation. Our study follows on from Van Loo et al., which carried out simulations to 0.5 pc resolution and examined global aspects of the formation of dense gas clumps and the resulting star formation rate. Here, using our higher resolution, we examine the detailed structural, kinematic, and dynamical properties of dense filaments and clumps, including mass surface density (Σ) probability distribution functions, filament mass per unit length and its dispersion, lateral Σ profiles, filament fragmentation, filament velocity gradients and infall, and degree of filament and clump virialization. Where possible, these properties are compared to observations of IRDCs. By many metrics, especially too large mass fractions of high {Σ }\\gt 1 g c{{m}-2} material, too high mass per unit length dispersion due to dense clump formation, too high velocity gradients, and too high velocity dispersion for a given mass per unit length, the simulated filaments differ from observed IRDCs. We thus conclude that IRDCs do not form from global fast collapse of GMCs. Rather, we expect that IRDC formation and collapse are slowed significantly by the influence of dynamically important magnetic fields, which may thus play a crucial role in regulating galactic star formation rates.