Sample records for site class maps

  1. Mapping NEHRP VS30 site classes

    USGS Publications Warehouse

    Holzer, T.L.; Padovani, A.C.; Bennett, M.J.; Noce, T.E.; Tinsley, J. C.

    2005-01-01

    Site-amplification potential in a 140-km2 area on the eastern shore of San Francisco Bay, California, was mapped with data from 210 seismic cone penetration test (SCPT) soundings. NEHRP VS30 values were computed on a 50-m grid by both taking into account the thickness and using mean values of locally measured shear-wave velocities of shallow geologic units. The resulting map of NEHRP VS30 site classes differs from other published maps that (1) do not include unit thickness and (2) are based on regional compilations of velocity. Although much of the area in the new map is now classified as NEHRP Site Class D, the velocities of the geologic deposits within this area are either near the upper or lower VS30 boundary of Class D. If maps of NEHRP site classes are to be based on geologic maps, velocity distributions of geologic units may need to be considered in the definition of VS30 boundaries of NEHRP site classes. ?? 2005, Earthquake Engineering Research Institute.

  2. National Park Service Vegetation Inventory Program, Cuyahoga Valley National Park, Ohio

    USGS Publications Warehouse

    Hop, Kevin D.; Drake, J.; Strassman, Andrew C.; Hoy, Erin E.; Menard, Shannon; Jakusz, J.W.; Dieck, J.J.

    2013-01-01

    The National Park Service (NPS) Vegetation Inventory Program (VIP) is an effort to classify, describe, and map existing vegetation of national park units for the NPS Natural Resource Inventory and Monitoring (I&M) Program. The NPS VIP is managed by the NPS Biological Resources Management Division and provides baseline vegetation information to the NPS Natural Resource I&M Program. The U.S. Geological Survey (USGS) Vegetation Characterization Program lends a cooperative role in the NPS VIP. The USGS Upper Midwest Environmental Sciences Center, NatureServe, and NPS Cuyahoga Valley National Park (CUVA) have completed vegetation classification and mapping of CUVA.Mappers, ecologists, and botanists collaborated to identify and describe vegetation types within the National Vegetation Classification Standard (NVCS) and to determine how best to map them by using aerial imagery. The team collected data from 221 vegetation plots within CUVA to develop detailed descriptions of vegetation types. Data from 50 verification sites were also collected to test both the key to vegetation types and the application of vegetation types to a sample set of map polygons. Furthermore, data from 647 accuracy assessment (AA) sites were collected (of which 643 were used to test accuracy of the vegetation map layer). These data sets led to the identification of 45 vegetation types at the association level in the NVCS at CUVA.A total of 44 map classes were developed to map the vegetation and general land cover of CUVA, including the following: 29 map classes represent natural/semi-natural vegetation types in the NVCS, 12 map classes represent cultural vegetation (agricultural and developed) in the NVCS, and 3 map classes represent non-vegetation features (open-water bodies). Features were interpreted from viewing color-infrared digital aerial imagery dated October 2010 (during peak leaf-phenology change of trees) via digital onscreen three-dimensional stereoscopic workflow systems in geographic information systems (GIS). The interpreted data were digitally and spatially referenced, thus making the spatial database layers usable in GIS. Polygon units were mapped to either a 0.5 ha or 0.25 ha minimum mapping unit, depending on vegetation type.A geodatabase containing various feature-class layers and tables shows the locations of vegetation types and general land cover (vegetation map), vegetation plot samples, verification sites, AA sites, project boundary extent, and aerial photographic centers. The feature-class layer and relate tables for the CUVA vegetation map provides 4,640 polygons of detailed attribute data covering 13,288.4 ha, with an average polygon size of 2.9 ha.Summary reports generated from the vegetation map layer show map classes representing natural/semi-natural types in the NVCS apply to 4,151 polygons (89.4% of polygons) and cover 11,225.0 ha (84.5%) of the map extent. Of these polygons, the map layer shows CUVA to be 74.4% forest (9,888.8 ha), 2.5% shrubland (329.7 ha), and 7.6% herbaceous vegetation cover (1,006.5 ha). Map classes representing cultural types in the NVCS apply to 435 polygons (9.4% of polygons) and cover 1,825.7 ha (13.7%) of the map extent. Map classes representing non-NVCS units (open water) apply to 54 polygons (1.2% of polygons) and cover 237.7 ha (1.8%) of the map extent.A thematic AA study was conducted of map classes representing natural/semi-natural types in the NVCS. Results present an overall accuracy of 80.7% (kappa index of 79.5%) based on data from 643 of the 647 AA sites. Most individual map-class themes exceed the NPS VIP standard of 80% with a 90% confidence interval.The CUVA vegetation mapping project delivers many geospatial and vegetation data products in hardcopy and/or digital formats. These products consist of an in-depth project report discussing methods and results, which include descriptions and a dichotomous key to vegetation types, map classification and map-class descriptions, and a contingency table showing AA results. The suite of products also includes a database of vegetation plots, verification sites, and AA sites; digital pictures of field sites; field data sheets; aerial photographic imagery; hardcopy and digital maps; and a geodatabase of vegetation types and land cover (map layer), fieldwork locations (vegetation plots, verification sites, and AA sites), aerial photographic index, project boundary, and metadata. All geospatial products are projected in Universal Transverse Mercator, Zone 17, by using the North American Datum of 1983. Information on the NPS VIP and completed park mapping projects are located on the Internet at and .

  3. Optimal mapping of site-specific multivariate soil properties.

    PubMed

    Burrough, P A; Swindell, J

    1997-01-01

    This paper demonstrates how geostatistics and fuzzy k-means classification can be used together to improve our practical understanding of crop yield-site response. Two aspects of soil are important for precision farming: (a) sensible classes for a given crop, and (b) their spatial variation. Local site classifications are more sensitive than general taxonomies and can be provided by the method of fuzzy k-means to transform a multivariate data set with i attributes measured at n sites into k overlapping classes; each site has a membership value mk for each class in the range 0-1. Soil variation is of interest when conditions vary over patches manageable by agricultural machinery. The spatial variation of each of the k classes can be analysed by computing the variograms of mk over the n sites. Memberships for each of the k classes can be mapped by ordinary kriging. Areas of class dominance and the transition zones between them can be identified by an inter-class confusion index; reducing the zones to boundaries gives crisp maps of dominant soil groups that can be used to guide precision farming equipment. Automation of the procedure is straightforward given sufficient data. Time variations in soil properties can be automatically incorporated in the computation of membership values. The procedures are illustrated with multi-year crop yield data collected from a 5 ha demonstration field at the Royal Agricultural College in Cirencester, UK.

  4. Mapping wetlands in Nova Scotia with multi-beam RADARSAT-2 Polarimetric SAR, optical satellite imagery, and Lidar data

    NASA Astrophysics Data System (ADS)

    Jahncke, Raymond; Leblon, Brigitte; Bush, Peter; LaRocque, Armand

    2018-06-01

    Wetland maps currently in use by the Province of Nova Scotia, namely the Department of Natural Resources (DNR) wetland inventory map and the swamp wetland classes of the DNR forest map, need to be updated. In this study, wetlands were mapped in an area southwest of Halifax, Nova Scotia by classifying a combination of multi-date and multi-beam RADARSAT-2 C-band polarimetric SAR (polSAR) images with spring Lidar, and fall QuickBird optical data using the Random Forests (RF) classifier. The resulting map has five wetland classes (open-water/marsh complex, open bog, open fen, shrub/treed fen/bog, swamp), plus lakes and various upland classes. Its accuracy was assessed using data from 156 GPS wetland sites collected in 2012 and compared to the one obtained with the current wetland map of Nova Scotia. The best overall classification was obtained using a combination of Lidar, RADARSAT-2 HH, HV, VH, VV intensity with polarimetric variables, and QuickBird multispectral (89.2%). The classified image was compared to GPS validation sites to assess the mapping accuracy of the wetlands. It was first done considering a group consisting of all wetland classes including lakes. This showed that only 69.9% of the wetland sites were correctly identified when only the QuickBird classified image was used in the classification. With the addition of variables derived from lidar, the number of correctly identified wetlands increased to 88.5%. The accuracy remained the same with the addition of RADARSAT-2 (88.5%). When we tested the accuracy for identifying wetland classes (e.g. marsh complex vs. open bog) instead of grouped wetlands, the resulting wetland map performed best with either QuickBird and Lidar, or QuickBird, Lidar, and RADARSAT-2 (66%). The Province of Nova Scotia's current wetland inventory and its associated wetland classes (aerial-photo interpreted) were also assessed against the GPS wetland sites. This provincial inventory correctly identified 62.2% of the grouped wetlands and only 18.6% of the wetland classes. The current inventory's poor performance demonstrates the value of incorporating a combination of new data sources into the provincial wetland mapping.

  5. National Park Service Vegetation Mapping Inventory Program: Appalachian National Scenic Trail vegetation mapping project

    USGS Publications Warehouse

    Hop, Kevin D.; Strassman, Andrew C.; Hall, Mark; Menard, Shannon; Largay, Ery; Sattler, Stephanie; Hoy, Erin E.; Ruhser, Janis; Hlavacek, Enrika; Dieck, Jennifer

    2017-01-01

    The National Park Service (NPS) Vegetation Mapping Inventory (VMI) Program classifies, describes, and maps existing vegetation of national park units for the NPS Natural Resource Inventory and Monitoring (I&M) Program. The NPS VMI Program is managed by the NPS I&M Division and provides baseline vegetation information to the NPS Natural Resource I&M Program. The U.S. Geological Survey Upper Midwest Environmental Sciences Center, NatureServe, NPS Northeast Temperate Network, and NPS Appalachian National Scenic Trail (APPA) have completed vegetation classification and mapping of APPA for the NPS VMI Program.Mappers, ecologists, and botanists collaborated to affirm vegetation types within the U.S. National Vegetation Classification (USNVC) of APPA and to determine how best to map the vegetation types by using aerial imagery. Analyses of data from 1,618 vegetation plots were used to describe USNVC associations of APPA. Data from 289 verification sites were collected to test the field key to vegetation associations and the application of vegetation associations to a sample set of map polygons. Data from 269 validation sites were collected to assess vegetation mapping prior to submitting the vegetation map for accuracy assessment (AA). Data from 3,265 AA sites were collected, of which 3,204 were used to test accuracy of the vegetation map layer. The collective of these datasets affirmed 280 USNVC associations for the APPA vegetation mapping project.To map the vegetation and land cover of APPA, 169 map classes were developed. The 169 map classes consist of 150 that represent natural (including ruderal) vegetation types in the USNVC, 11 that represent cultural (agricultural and developed) vegetation types in the USNVC, 5 that represent natural landscapes with catastrophic disturbance or some other modification to natural vegetation preventing accurate classification in the USNVC, and 3 that represent nonvegetated water (non-USNVC). Features were interpreted from viewing 4-band digital aerial imagery using digital onscreen three-dimensional stereoscopic workflow systems in geographic information systems (GIS). (Digital aerial imagery was collected each fall during 2009–11 to capture leaf-phenology change of hardwood trees across the latitudinal range of APPA.) The interpreted data were digitally and spatially referenced, thus making the spatial-database layers usable in GIS. Polygon units were mapped to either a 0.5-hectare (ha) or 0.25-ha minimum mapping unit, depending on vegetation type or scenario; however, polygon units were mapped to 0.1 ha for alpine vegetation.A geodatabase containing various feature-class layers and tables provide locations and support data to USNVC vegetation types (vegetation map layer), vegetation plots, verification sites, validation sites, AA sites, project boundary extent and zones, and aerial image centers and flight lines. The feature-class layer and related tables of the vegetation map layer provide 30,395 polygons of detailed attribute data covering 110,919.7 ha, with an average polygon size of 3.6 ha; the vegetation map coincides closely with the administrative boundary for APPA.Summary reports generated from the vegetation map layer of the map classes representing USNVC natural (including ruderal) vegetation types apply to 28,242 polygons (92.9% of polygons) and cover 106,413.0 ha (95.9%) of the map extent for APPA. The map layer indicates APPA to be 92.4% forest and woodland (102,480.8 ha), 1.7% shrubland (1866.3 ha), and 1.8% herbaceous cover (2,065.9 ha). Map classes representing park-special vegetation (undefined in the USNVC) apply to 58 polygons (0.2% of polygons) and cover 404.3 ha (0.4%) of the map extent. Map classes representing USNVC cultural types apply to 1,777 polygons (5.8% of polygons) and cover 2,516.3 ha (2.3%) of the map extent. Map classes representing nonvegetated water (non-USNVC) apply to 332 polygons (1.1% of polygons) and cover 1,586.2 ha (1.4%) of the map extent.

  6. Image Analysis for Facility Siting: a Comparison of Lowand High-altitude Image Interpretability for Land Use/land Cover Mapping

    NASA Technical Reports Server (NTRS)

    Borella, H. M.; Estes, J. E.; Ezra, C. E.; Scepan, J.; Tinney, L. R.

    1982-01-01

    For two test sites in Pennsylvania the interpretability of commercially acquired low-altitude and existing high-altitude aerial photography are documented in terms of time, costs, and accuracy for Anderson Level II land use/land cover mapping. Information extracted from the imagery is to be used in the evaluation process for siting energy facilities. Land use/land cover maps were drawn at 1:24,000 scale using commercially flown color infrared photography obtained from the United States Geological Surveys' EROS Data Center. Detailed accuracy assessment of the maps generated by manual image analysis was accomplished employing a stratified unaligned adequate class representation. Both 'area-weighted' and 'by-class' accuracies were documented and field-verified. A discrepancy map was also drawn to illustrate differences in classifications between the two map scales. Results show that the 1:24,000 scale map set was more accurate (99% to 94% area-weighted) than the 1:62,500 scale set, especially when sampled by class (96% to 66%). The 1:24,000 scale maps were also more time-consuming and costly to produce, due mainly to higher image acquisition costs.

  7. Earthquake Hazard Class Mapping by Parcel in Las Vegas Valley

    NASA Astrophysics Data System (ADS)

    Pancha, A.; Pullammanappallil, S.; Louie, J. N.; Hellmer, W. K.

    2011-12-01

    Clark County, Nevada completed the very first effort in the United States to map earthquake hazard class systematically through an entire urban area. The map is used in development and disaster response planning, in addition to its direct use for building code implementation and enforcement. The County contracted with the Nevada System of Higher Education to classify about 500 square miles including urban Las Vegas Valley, and exurban areas considered for future development. The Parcel Map includes over 10,000 surface-wave array measurements accomplished over three years using Optim's SeisOpt° ReMi measurement and processing techniques adapted for large scale data. These array measurements classify individual parcels on the NEHRP hazard scale. Parallel "blind" tests were conducted at 93 randomly selected sites. The rms difference between the Vs30 values yielded by the blind data and analyses and the Parcel Map analyses is 4.92%. Only six of the blind-test sites showed a difference with a magnitude greater than 10%. We describe a "C+" Class for sites with Class B average velocities but soft surface soil. The measured Parcel Map shows a clearly definable C+ to C boundary on the west side of the Valley. The C to D boundary is much more complex. Using the parcel map in computing shaking in the Valley for scenario earthquakes is crucial for obtaining realistic predictions of ground motions.

  8. National Park Service Vegetation Mapping Inventory Program: Natchez Trace Parkway vegetation mapping project report

    USGS Publications Warehouse

    Hop, Kevin D.; Strassman, Andrew C.; Nordman, Carl; Pyne, Milo; White, Rickie; Jakusz, Joseph; Hoy, Erin E.; Dieck, Jennifer

    2016-01-01

    The National Park Service (NPS) Vegetation Mapping Inventory (VMI) Program is an effort to classify, describe, and map existing vegetation of national park units for the NPS Natural Resource Inventory and Monitoring (I&M) Program. The NPS VMI Program is managed by the NPS I&M Division and provides baseline vegetation information to the NPS Natural Resource I&M Program. The U.S. Geological Survey Upper Midwest Environmental Sciences Center, NatureServe, NPS Gulf Coast Network, and NPS Natchez Trace Parkway (NATR; also referred to as Parkway) have completed vegetation classification and mapping of NATR for the NPS VMI Program.Mappers, ecologists, and botanists collaborated to affirm vegetation types within the U.S. National Vegetation Classification (USNVC) of NATR and to determine how best to map them by using aerial imagery. Analyses of data from 589 vegetation plots had been used to describe an initial 99 USNVC associations in the Parkway; this classification work was completed prior to beginning this NATR vegetation mapping project. Data were collected during this project from another eight quick plots to support new vegetation types not previously identified at the Parkway. Data from 120 verification sites were collected to test the field key to vegetation associations and the application of vegetation associations to a sample set of map polygons. Furthermore, data from 900 accuracy assessment (AA) sites were collected (of which 894 were used to test accuracy of the vegetation map layer). The collective of all these datasets resulted in affirming 122 USNVC associations at NATR.To map the vegetation and open water of NATR, 63 map classes were developed. including the following: 54 map classes represent natural (including ruderal) vegetation types in the USNVC, 5 map classes represent cultural (agricultural and developed) vegetation types in the USNVC, 3 map classes represent nonvegetation open-water bodies (non-USNVC), and 1 map class represents landscapes that had received tornado damage a few months prior to the time of aerial imagery collection. Features were interpreted from viewing 4-band digital aerial imagery by means of digital onscreen three-dimensional stereoscopic workflow systems in geographic information systems. (The aerial imagery was collected during mid-October 2011 for the northern reach of the Parkway and mid-November 2011 for the southern reach of the Parkway to capture peak leaf-phenology of trees.) The interpreted data were digitally and spatially referenced, thus making the spatial-database layers usable in geographic information systems. Polygon units were mapped to either a 0.5 hectare (ha) or 0.25 ha minimum mapping unit, depending on vegetation type or scenario.A geodatabase containing various feature-class layers and tables present the locations of USNVC vegetation types (vegetation map), vegetation plot samples, verification sites, AA sites, project boundary extent, and aerial image centers. The feature-class layer and related tables for the vegetation map provide 13,529 polygons of detailed attribute data covering 21,655.5 ha, with an average polygon size of 1.6 ha; the vegetation map coincides closely with the administrative boundary for NATR.Summary reports generated from the vegetation map layer of the map classes representing USNVC natural (including ruderal) vegetation types apply to 12,648 polygons (93.5% of polygons) and cover 18,542.7 ha (85.6%) of the map extent for NATR. The map layer indicates the Parkway to be 70.5% forest and woodland (15,258.7 ha), 0.3% shrubland (63.0 ha), and 14.9% herbaceous cover (3,221.0 ha). Map classes representing USNVC cultural types apply to 678 polygons (5.0% of polygons) and cover 2,413.9 ha (11.1%) of the map extent.

  9. Shear-wave velocity characterization of the USGS Hawaiian strong-motion network on the Island of Hawaii and development of an NEHRP site-class map

    USGS Publications Warehouse

    Wong, Ivan G.; Stokoe, Kenneth; Cox, Brady R.; Yuan, Jiabei; Knudsen, Keith L.; Terra, Fabia; Okubo, Paul G.; Lin, Yin-Cheng

    2011-01-01

    To assess the level and nature of ground shaking in Hawaii for the purposes of earthquake hazard mitigation and seismic design, empirical ground-motion prediction models are desired. To develop such empirical relationships, knowledge of the subsurface site conditions beneath strong-motion stations is critical. Thus, as a first step to develop ground-motion prediction models for Hawaii, spectral-analysis-of-surface-waves (SASW) profiling was performed at the 22 free-field U.S. Geological Survey (USGS) strong-motion sites on the Big Island to obtain shear-wave velocity (VS) data. Nineteen of these stations recorded the 2006 Kiholo Bay moment magnitude (M) 6.7 earthquake, and 17 stations recorded the triggered M 6.0 Mahukona earthquake. VS profiling was performed to reach depths of more than 100 ft. Most of the USGS stations are situated on sites underlain by basalt, based on surficial geologic maps. However, the sites have varying degrees of weathering and soil development. The remaining strong-motion stations are located on alluvium or volcanic ash. VS30 (average VS in the top 30 m) values for the stations on basalt ranged from 906 to 1908 ft/s [National Earthquake Hazards Reduction Program (NEHRP) site classes C and D], because most sites were covered with soil of variable thickness. Based on these data, an NEHRP site-class map was developed for the Big Island. These new VS data will be a significant input into an update of the USGS statewide hazard maps and to the operation of ShakeMap on the island of Hawaii.

  10. Korean coastal water depth/sediment and land cover mapping (1:25,000) by computer analysis of LANDSAT imagery

    NASA Technical Reports Server (NTRS)

    Park, K. Y.; Miller, L. D.

    1978-01-01

    Computer analysis was applied to single date LANDSAT MSS imagery of a sample coastal area near Seoul, Korea equivalent to a 1:50,000 topographic map. Supervised image processing yielded a test classification map from this sample image containing 12 classes: 5 water depth/sediment classes, 2 shoreline/tidal classes, and 5 coastal land cover classes at a scale of 1:25,000 and with a training set accuracy of 76%. Unsupervised image classification was applied to a subportion of the site analyzed and produced classification maps comparable in results in a spatial sense. The results of this test indicated that it is feasible to produce such quantitative maps for detailed study of dynamic coastal processes given a LANDSAT image data base at sufficiently frequent time intervals.

  11. ARRA-funded VS30 measurements using multi-technique approach at strong-motion stations in California and central-eastern United States

    USGS Publications Warehouse

    Yong, Alan; Martin, Antony; Stokoe, Kenneth; Diehl, John

    2013-01-01

    Funded by the 2009 American Recovery and Reinvestment Act (ARRA), we conducted geophysical site characterizations at 191 strong-motion stations: 187 in California and 4 in the Central-Eastern United States (CEUS). The geophysical methods used at each site included passive and active surface-wave and body-wave techniques. Multiple techniques were used at most sites, with the goal of robustly determining VS (shear-wave velocity) profiles and VS30 (the time-averaged shear-wave velocity in the upper 30 meters depth). These techniques included: horizontal-to-vertical spectral ratio (HVSR), two-dimensional (2-D) array microtremor (AM), refraction microtremor (ReMi™), spectral analysis of surface wave (SASW), multi-channel analysis of surface waves (Rayleigh wave: MASRW; and Love wave: MASLW), and compressional- and shear-wave refraction. Of the selected sites, 47 percent have crystalline, volcanic, or sedimentary rock at the surface or at relatively shallow depth, and 53 percent are of Quaternary sediments located in either rural or urban environments. Calculated values of VS30 span almost the full range of the National Earthquake Hazards Reduction Program (NEHRP) Site Classes, from D (stiff soils) to B (rock). The NEHRP Site Classes based on VS30 range from being consistent with the Class expected from analysis of surficial geology, to being one or two Site Classes below expected. In a few cases where differences between the observed and expected Site Class occurred, it was the consequence of inaccurate or coarse geologic mapping, as well as considerable degradation of the near-surface rock. Additionally, several sites mapped as rock have Site Class D (stiff soil) velocities, which is due to the extensive weathering of the surficial rock.

  12. Implications of NGA for NEHRP site coefficients

    USGS Publications Warehouse

    Borcherdt, Roger D.

    2012-01-01

    Three proposals are provided to update tables 11.4-1 and 11.4-2 of Minimum Design Loads for Buildings and Other Structures (7-10), by the American Society of Civil Engineers (2010) (ASCE/SEI 7-10), with site coefficients implied directly by NGA (Next Generation Attenuation) ground motion prediction equations (GMPEs). Proposals include a recommendation to use straight-line interpolation to infer site coefficients at intermediate values of ̅vs (average shear velocity). Site coefficients are recommended to ensure consistency with ASCE/SEI 7-10 MCER (Maximum Considered Earthquake) seismic-design maps and simplified site-specific design spectra procedures requiring site classes with associated tabulated site coefficients and a reference site class with unity site coefficients. Recommended site coefficients are confirmed by independent observations of average site amplification coefficients inferred with respect to an average ground condition consistent with that used for the MCER maps. The NGA coefficients recommended for consideration are implied directly by the NGA GMPEs and do not require introduction of additional models.

  13. Three-dimensional mapping of equiprobable hydrostratigraphic units at the Frenchman Flat Corrective Action Unit, Nevada Test Site

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Shirley, C.; Pohlmann, K.; Andricevic, R.

    1996-09-01

    Geological and geophysical data are used with the sequential indicator simulation algorithm of Gomez-Hernandez and Srivastava to produce multiple, equiprobable, three-dimensional maps of informal hydrostratigraphic units at the Frenchman Flat Corrective Action Unit, Nevada Test Site. The upper 50 percent of the Tertiary volcanic lithostratigraphic column comprises the study volume. Semivariograms are modeled from indicator-transformed geophysical tool signals. Each equiprobable study volume is subdivided into discrete classes using the ISIM3D implementation of the sequential indicator simulation algorithm. Hydraulic conductivity is assigned within each class using the sequential Gaussian simulation method of Deutsch and Journel. The resulting maps show the contiguitymore » of high and low hydraulic conductivity regions.« less

  14. Proposal for a study of computer mapping of terrain using multispectral data from ERTS-A for the Yellowstone National Park test site

    NASA Technical Reports Server (NTRS)

    Smedes, H. W. (Principal Investigator); Root, R. R.; Roller, N. E. G.; Despain, D.

    1978-01-01

    The author has identified the following significant results. A terrain map of Yellowstone National Park showed plant community types and other classes of ground cover in what is basically a wild land. The map comprised 12 classes, six of which were mapped with accuracies of 70 to 95%. The remaining six classes had spectral reflectances that overlapped appreciably, and hence, those were mapped less accurately. Techniques were devised for quantitatively comparing the recognition map of the park with control data acquired from ground inspection and from analysis of sidelooking radar images, a thermal IR mosaic, and IR aerial photos of several scales. Quantitative analyses were made in ten 40 sq km test areas. Comparison mechanics were performed by computer with the final results displayed on line printer output. Forested areas were mapped by computer using ERTS data for less than 1/4 the cost of the conventional forest mapping technique for topographic base maps.

  15. Multicriteria analysis for sources of renewable energy using data from remote sensing

    NASA Astrophysics Data System (ADS)

    Matejicek, L.

    2015-04-01

    Renewable energy sources are major components of the strategy to reduce harmful emissions and to replace depleting fossil energy resources. Data from remote sensing can provide information for multicriteria analysis for sources of renewable energy. Advanced land cover quantification makes it possible to search for suitable sites. Multicriteria analysis, together with other data, is used to determine the energy potential and socially acceptability of suggested locations. The described case study is focused on an area of surface coal mines in the northwestern region of the Czech Republic, where the impacts of surface mining and reclamation constitute a dominant force in land cover changes. High resolution satellite images represent the main input datasets for identification of suitable sites. Solar mapping, wind predictions, the location of weirs in watersheds, road maps and demographic information complement the data from remote sensing for multicriteria analysis, which is implemented in a geographic information system (GIS). The input spatial datasets for multicriteria analysis in GIS are reclassified to a common scale and processed with raster algebra tools to identify suitable sites for sources of renewable energy. The selection of suitable sites is limited by the CORINE land cover database to mining and agricultural areas. The case study is focused on long term land cover changes in the 1985-2015 period. Multicriteria analysis based on CORINE data shows moderate changes in mapping of suitable sites for utilization of selected sources of renewable energy in 1990, 2000, 2006 and 2012. The results represent map layers showing the energy potential on a scale of a few preference classes (1-7), where the first class is linked to minimum preference and the last class to maximum preference. The attached histograms show the moderate variability of preference classes due to land cover changes caused by mining activities. The results also show a slight increase in the more preferred classes for utilization of sources of renewable energy due to an increase area of reclaimed sites. Using data from remote sensing, such as the multispectral images and the CORINE land cover datasets, can reduce the financial resources currently required for finding and assessing suitable areas.

  16. Geologic and geophysical maps of the El Casco 7.5′ quadrangle, Riverside County, southern California, with accompanying geologic-map database

    USGS Publications Warehouse

    Matti, J.C.; Morton, D.M.; Langenheim, V.E.

    2015-01-01

    Geologic information contained in the El Casco database is general-purpose data applicable to land-related investigations in the earth and biological sciences. The term “general-purpose” means that all geologic-feature classes have minimal information content adequate to characterize their general geologic characteristics and to interpret their general geologic history. However, no single feature class has enough information to definitively characterize its properties and origin. For this reason the database cannot be used for site-specific geologic evaluations, although it can be used to plan and guide investigations at the site-specific level.

  17. A hyper-temporal remote sensing protocol for high-resolution mapping of ecological sites

    PubMed Central

    Karl, Jason W.

    2017-01-01

    Ecological site classification has emerged as a highly effective land management framework, but its utility at a regional scale has been limited due to the spatial ambiguity of ecological site locations in the U.S. or the absence of ecological site maps in other regions of the world. In response to these shortcomings, this study evaluated the use of hyper-temporal remote sensing (i.e., hundreds of images) for high spatial resolution mapping of ecological sites. We posit that hyper-temporal remote sensing can provide novel insights into the spatial variability of ecological sites by quantifying the temporal response of land surface spectral properties. This temporal response provides a spectral ‘fingerprint’ of the soil-vegetation-climate relationship which is central to the concept of ecological sites. Consequently, the main objective of this study was to predict the spatial distribution of ecological sites in a semi-arid rangeland using a 28-year time series of normalized difference vegetation index from Landsat TM 5 data and modeled using support vector machine classification. Results from this study show that support vector machine classification using hyper-temporal remote sensing imagery was effective in modeling ecological site classes, with a 62% correct classification. These results were compared to Gridded Soil Survey Geographic database and expert delineated maps of ecological sites which had a 51 and 89% correct classification, respectively. An analysis of the effects of ecological state on ecological site misclassifications revealed that sites in degraded states (e.g., shrub-dominated/shrubland and bare/annuals) had a higher rate of misclassification due to their close spectral similarity with other ecological sites. This study identified three important factors that need to be addressed to improve future model predictions: 1) sampling designs need to fully represent the range of both within class (i.e., states) and between class (i.e., ecological sites) spectral variability through time, 2) field sampling protocols that accurately characterize key soil properties (e.g., texture, depth) need to be adopted, and 3) additional environmental covariates (e.g. terrain attributes) need to be evaluated that may help further differentiate sites with similar spectral signals. Finally, the proposed hyper-temporal remote sensing framework may provide a standardized approach to evaluate and test our ecological site concepts through examining differences in vegetation dynamics in response to climatic variability and other drivers of land-use change. Results from this study demonstrate the efficacy of the hyper-temporal remote sensing approach for high resolution mapping of ecological sites, and highlights its utility in terms of reduced cost and time investment relative to traditional manual mapping approaches. PMID:28414731

  18. A hyper-temporal remote sensing protocol for high-resolution mapping of ecological sites.

    PubMed

    Maynard, Jonathan J; Karl, Jason W

    2017-01-01

    Ecological site classification has emerged as a highly effective land management framework, but its utility at a regional scale has been limited due to the spatial ambiguity of ecological site locations in the U.S. or the absence of ecological site maps in other regions of the world. In response to these shortcomings, this study evaluated the use of hyper-temporal remote sensing (i.e., hundreds of images) for high spatial resolution mapping of ecological sites. We posit that hyper-temporal remote sensing can provide novel insights into the spatial variability of ecological sites by quantifying the temporal response of land surface spectral properties. This temporal response provides a spectral 'fingerprint' of the soil-vegetation-climate relationship which is central to the concept of ecological sites. Consequently, the main objective of this study was to predict the spatial distribution of ecological sites in a semi-arid rangeland using a 28-year time series of normalized difference vegetation index from Landsat TM 5 data and modeled using support vector machine classification. Results from this study show that support vector machine classification using hyper-temporal remote sensing imagery was effective in modeling ecological site classes, with a 62% correct classification. These results were compared to Gridded Soil Survey Geographic database and expert delineated maps of ecological sites which had a 51 and 89% correct classification, respectively. An analysis of the effects of ecological state on ecological site misclassifications revealed that sites in degraded states (e.g., shrub-dominated/shrubland and bare/annuals) had a higher rate of misclassification due to their close spectral similarity with other ecological sites. This study identified three important factors that need to be addressed to improve future model predictions: 1) sampling designs need to fully represent the range of both within class (i.e., states) and between class (i.e., ecological sites) spectral variability through time, 2) field sampling protocols that accurately characterize key soil properties (e.g., texture, depth) need to be adopted, and 3) additional environmental covariates (e.g. terrain attributes) need to be evaluated that may help further differentiate sites with similar spectral signals. Finally, the proposed hyper-temporal remote sensing framework may provide a standardized approach to evaluate and test our ecological site concepts through examining differences in vegetation dynamics in response to climatic variability and other drivers of land-use change. Results from this study demonstrate the efficacy of the hyper-temporal remote sensing approach for high resolution mapping of ecological sites, and highlights its utility in terms of reduced cost and time investment relative to traditional manual mapping approaches.

  19. Mapping ecological states in a complex environment

    NASA Astrophysics Data System (ADS)

    Steele, C. M.; Bestelmeyer, B.; Burkett, L. M.; Ayers, E.; Romig, K.; Slaughter, A.

    2013-12-01

    The vegetation of northern Chihuahuan Desert rangelands is sparse, heterogeneous and for most of the year, consists of a large proportion of non-photosynthetic material. The soils in this area are spectrally bright and variable in their reflectance properties. Both factors provide challenges to the application of remote sensing for estimating canopy variables (e.g., leaf area index, biomass, percentage canopy cover, primary production). Additionally, with reference to current paradigms of rangeland health assessment, remotely-sensed estimates of canopy variables have limited practical use to the rangeland manager if they are not placed in the context of ecological site and ecological state. To address these challenges, we created a multifactor classification system based on the USDA-NRCS ecological site schema and associated state-and-transition models to map ecological states on desert rangelands in southern New Mexico. Applying this system using per-pixel image processing techniques and multispectral, remotely sensed imagery raised other challenges. Per-pixel image classification relies upon the spectral information in each pixel alone, there is no reference to the spatial context of the pixel and its relationship with its neighbors. Ecological state classes may have direct relevance to managers but the non-unique spectral properties of different ecological state classes in our study area means that per-pixel classification of multispectral data performs poorly in discriminating between different ecological states. We found that image interpreters who are familiar with the landscape and its associated ecological site descriptions perform better than per-pixel classification techniques in assigning ecological states. However, two important issues affect manual classification methods: subjectivity of interpretation and reproducibility of results. An alternative to per-pixel classification and manual interpretation is object-based image analysis. Object-based image analysis provides a platform for classification that more closely resembles human recognition of objects within a remotely sensed image. The analysis presented here compares multiple thematic maps created for test locations on the USDA-ARS Jornada Experimental Range ranch. Three study sites in different pastures, each 300 ha in size, were selected for comparison on the basis of their ecological site type (';Clayey', ';Sandy' and a combination of both) and the degree of complexity of vegetation cover. Thematic maps were produced for each study site using (i) manual interpretation of digital aerial photography (by five independent interpreters); (ii) object-oriented, decision-tree classification of fine and moderate spatial resolution imagery (Quickbird; Landsat Thematic Mapper) and (iii) ground survey. To identify areas of uncertainty, we compared agreement in location, areal extent and class assignation between 5 independently produced, manually-digitized ecological state maps and with the map created from ground survey. Location, areal extent and class assignation of the map produced by object-oriented classification was also assessed with reference to the ground survey map.

  20. Mapping the Natchez Trace Parkway

    USGS Publications Warehouse

    Rangoonwala, Amina; Bannister, Terri; Ramsey, Elijah W.

    2011-01-01

    Based on a National Park Service (NPS) landcover classification, a landcover map of the 715-km (444-mile) NPS Natchez Trace Parkway (hereafter referred to as the "Parkway") was created. The NPS landcover classification followed National Vegetation Classification (NVC) protocols. The landcover map, which extended the initial landcover classification to the entire Parkway, was based on color-infrared photography converted to 1-m raster-based digital orthophoto quarter quadrangles, according to U.S. Geological Survey mapping standards. Our goal was to include as many alliance classes as possible in the Parkway landcover map. To reach this goal while maintaining a consistent and quantifiable map product throughout the Parkway extent, a mapping strategy was implemented based on the migration of class-based spectral textural signatures and the congruent progressive refinement of those class signatures along the Parkway. Progressive refinement provided consistent mapping by evaluating the spectral textural distinctiveness of the alliance-association classes, and where necessary, introducing new map classes along the Parkway. By following this mapping strategy, the use of raster-based image processing and geographic information system analyses for the map production provided a quantitative and reproducible product. Although field-site classification data were severely limited, the combination of spectral migration of class membership along the Parkway and the progressive classification strategy produced an organization of alliances that was internally highly consistent. The organization resulted from the natural patterns or alignments of spectral variance and the determination of those spectral patterns that were compositionally similar in the dominant species as NVC alliances. Overall, the mapped landcovers represented the existent spectral textural patterns that defined and encompassed the complex variety of compositional alliances and associations of the Parkway. Based on that mapped representation, forests dominate the Parkway landscape. Grass is the second largest Parkway land cover, followed by scrub-shrub and shrubland classes and pine plantations. The map provides a good representation of the landcover patterns and their changes over the extent of the Parkway, south to north.

  1. Accuracy assessment/validation methodology and results of 2010–11 land-cover/land-use data for Pools 13, 26, La Grange, and Open River South, Upper Mississippi River System

    USGS Publications Warehouse

    Jakusz, J.W.; Dieck, J.J.; Langrehr, H.A.; Ruhser, J.J.; Lubinski, S.J.

    2016-01-11

    Similar to an AA, validation involves generating random points based on the total area for each map class. However, instead of collecting field data, two or three individuals not involved with the photo-interpretative mapping separately review each of the points onscreen and record a best-fit vegetation type(s) for each site. Once the individual analyses are complete, results are joined together and a comparative analysis is performed. The objective of this initial analysis is to identify areas where the validation results were in agreement (matches) and areas where validation results were in disagreement (mismatches). The two or three individuals then perform an analysis, looking at each mismatched site, and agree upon a final validation class. (If two vegetation types at a specific site appear to be equally prevalent, the validation team is permitted to assign the site two best-fit vegetation types.) Following the validation team’s comparative analysis of vegetation assignments, the data are entered into a database and compared to the mappers’ vegetation assignments. Agreements and disagreements between the map and validation classes are identified, and a contingency table is produced. This document presents the AA processes/results for Pools 13 and La Grange, as well as the validation process/results for Pools 13 and 26 and Open River South.

  2. Multi-site evaluation of IKONOS data for classification of tropical coral reef environments

    USGS Publications Warehouse

    Andrefouet, S.; Kramer, Philip; Torres-Pulliza, D.; Joyce, K.E.; Hochberg, E.J.; Garza-Perez, R.; Mumby, P.J.; Riegl, Bernhard; Yamano, H.; White, W.H.; Zubia, M.; Brock, J.C.; Phinn, S.R.; Naseer, A.; Hatcher, B.G.; Muller-Karger, F. E.

    2003-01-01

    Ten IKONOS images of different coral reef sites distributed around the world were processed to assess the potential of 4-m resolution multispectral data for coral reef habitat mapping. Complexity of reef environments, established by field observation, ranged from 3 to 15 classes of benthic habitats containing various combinations of sediments, carbonate pavement, seagrass, algae, and corals in different geomorphologic zones (forereef, lagoon, patch reef, reef flats). Processing included corrections for sea surface roughness and bathymetry, unsupervised or supervised classification, and accuracy assessment based on ground-truth data. IKONOS classification results were compared with classified Landsat 7 imagery for simple to moderate complexity of reef habitats (5-11 classes). For both sensors, overall accuracies of the classifications show a general linear trend of decreasing accuracy with increasing habitat complexity. The IKONOS sensor performed better, with a 15-20% improvement in accuracy compared to Landsat. For IKONOS, overall accuracy was 77% for 4-5 classes, 71% for 7-8 classes, 65% in 9-11 classes, and 53% for more than 13 classes. The Landsat classification accuracy was systematically lower, with an average of 56% for 5-10 classes. Within this general trend, inter-site comparisons and specificities demonstrate the benefits of different approaches. Pre-segmentation of the different geomorphologic zones and depth correction provided different advantages in different environments. Our results help guide scientists and managers in applying IKONOS-class data for coral reef mapping applications. ?? 2003 Elsevier Inc. All rights reserved.

  3. Comparing the information content of coral reef geomorphological and biological habitat maps, Amirantes Archipelago (Seychelles), Western Indian Ocean

    NASA Astrophysics Data System (ADS)

    Hamylton, S.; Andréfouët, S.; Spencer, T.

    2012-10-01

    Increasing the use of geomorphological map products in marine spatial planning has the potential to greatly enhance return on mapping investment as they are commonly two orders of magnitude cheaper to produce than biologically-focussed maps of benthic communities and shallow substrates. The efficacy of geomorphological maps derived from remotely sensed imagery as surrogates for habitat diversity is explored by comparing two map sets of the platform reefs and atolls of the Amirantes Archipelago (Seychelles), Western Indian Ocean. One mapping campaign utilised Compact Airborne Spectrographic Imagery (19 wavebands, 1 m spatial resolution) to classify 11 islands and associated reefs into 25 biological habitat classes while the other campaign used Landsat 7 + ETM imagery (7 bands, 30 m spatial resolution) to generate maps of 14 geomorphic classes. The maps were compared across a range of characteristics, including habitat richness (number of classes mapped), diversity (Shannon-Weiner statistic) and thematic content (Cramer's V statistic). Between maps, a strong relationship was revealed for habitat richness (R2 = 0.76), a moderate relationship for class diversity and evenness (R2 = 0.63) and a variable relationship for thematic content, dependent on site complexity (V range 0.43-0.93). Geomorphic maps emerged as robust predictors of the habitat richness in the Amirantes. Such maps therefore demonstrate high potential value for informing coastal management activities and conservation planning by drawing on information beyond their own thematic content and thus maximizing the return on mapping investment.

  4. Application of satellite data and LARS's data processing techniques to mapping vegetation of the Dismal Swamp. M.S. Thesis - Old Dominion Univ.

    NASA Technical Reports Server (NTRS)

    Messmore, J. A.

    1976-01-01

    The feasibility of using digital satellite imagery and automatic data processing techniques as a means of mapping swamp forest vegetation was considered, using multispectral scanner data acquired by the LANDSAT-1 satellite. The site for this investigation was the Dismal Swamp, a 210,000 acre swamp forest located south of Suffolk, Va. on the Virginia-North Carolina border. Two basic classification strategies were employed. The initial classification utilized unsupervised techniques which produced a map of the swamp indicating the distribution of thirteen forest spectral classes. These classes were later combined into three informational categories: Atlantic white cedar (Chamaecyparis thyoides), Loblolly pine (Pinus taeda), and deciduous forest. The subsequent classification employed supervised techniques which mapped Atlantic white cedar, Loblolly pine, deciduous forest, water and agriculture within the study site. A classification accuracy of 82.5% was produced by unsupervised techniques compared with 89% accuracy using supervised techniques.

  5. Wildlife management by habitat units: A preliminary plan of action

    NASA Technical Reports Server (NTRS)

    Frentress, C. D.; Frye, R. G.

    1975-01-01

    Procedures for yielding vegetation type maps were developed using LANDSAT data and a computer assisted classification analysis (LARSYS) to assist in managing populations of wildlife species by defined area units. Ground cover in Travis County, Texas was classified on two occasions using a modified version of the unsupervised approach to classification. The first classification produced a total of 17 classes. Examination revealed that further grouping was justified. A second analysis produced 10 classes which were displayed on printouts which were later color-coded. The final classification was 82 percent accurate. While the classification map appeared to satisfactorily depict the existing vegetation, two classes were determined to contain significant error. The major sources of error could have been eliminated by stratifying cluster sites more closely among previously mapped soil associations that are identified with particular plant associations and by precisely defining class nomenclature using established criteria early in the analysis.

  6. Predicting a roadkill hotspots based on spatial distribution of Korean water deer (Hydropotes inermis argyropus) using Maxent model in South Korea Expressway : In Case of Cheongju-Sangju Expressway

    NASA Astrophysics Data System (ADS)

    Park, Hyomin; Lee, Sangdon

    2016-04-01

    Road construction has direct and indirect effects on ecosystems. Especially wildlife-vehicle conflicts (roadkills) caused by roads are a considerable threat for population of many species. This study aims to identify the effects of topographic characteristics and spatial distribution of Korean water deer (Hydropotes inermis). Korean water deer is indigenous and native species in Korea that listed LC (least concern) by IUCN redlist categories. Korean water deer population is growing every year occupying for most of roadkills (>70%) in Korean express highway. In order to predict a distribution of the Korean water deer, we selected factors that most affected water deer's habitat. Major habitats of waterdeer are known as agricultural area, forest area and water. Based on this result, eight factors were selected (land cover map, vegetation map, age class of forest, diameter class of tree, population, slope of study site, elevation of study site, distance of river), and made a thematic map by using GIS program (ESRI, Arc GIS 10.3.1 ver.). To analyze the affected factors of waterdeer distribution, GPS data and thematic map of study area were entered into Maxent model (Maxent 3.3.3.k.). Results of analysis were verified by the AUC (Area Unit Curve) of ROC (Receiver Operating Characteristic). The ROC curve used the sensitivity and specificity as a reference for determining the prediction efficiency of the model and AUC area of ROC curve was higher prediction efficiency closer to '1.' Selecting factors that affected the distribution of waterdeer were land cover map, diameter class of tree and elevation of study site. The value of AUC was 0.623. To predict the water deer's roadkills hot spot on Cheongju-Sangju Expressway, the thematic map was prepared based on GPS data of roadkill spots. As a result, the topographic factors that affected waterdeer roadkill were land cover map, actual vegetation map and age class of forest and the value of AUC was 0.854. Through this study, we could identify the site and hot spots that water deer frequently expected to use based on quantitative data on the spatial and topographic factors. Therefore, we can suggest ways to minimize roadkills by selecting the hot spots and by suggesting construction of eco-corridors. This study will significantly enhance human-wildlife conflicts by identifying key habitat areas for wild mammals.

  7. Evaluation of land use mapping from ERTS in the shore zone of CARETS

    NASA Technical Reports Server (NTRS)

    Dolan, R.; Vincent, L.

    1973-01-01

    Imagery of the Atlantic shoreline zone of the Central Atlantic Regional Ecological Test Site (CARETS) was evaluated for classifying land use and land cover, employing the USGS Geographic Application Program's land use classification system. ERTS data can provide a basis for land cover and land use mapping within the shoreline zone, however because of the dynamic nature of this environment, two additional terms are considered: vulnerability of classes to storms and progressive erosion, and sensitivity of the classes to man's activities.

  8. A simulation of Earthquake Loss Estimation in Southeastern Korea using HAZUS and the local site classification Map

    NASA Astrophysics Data System (ADS)

    Kang, S.; Kim, K.

    2013-12-01

    Regionally varying seismic hazards can be estimated using an earthquake loss estimation system (e.g. HAZUS-MH). The estimations for actual earthquakes help federal and local authorities develop rapid, effective recovery measures. Estimates for scenario earthquakes help in designing a comprehensive earthquake hazard mitigation plan. Local site characteristics influence the ground motion. Although direct measurements are desirable to construct a site-amplification map, such data are expensive and time consuming to collect. Thus we derived a site classification map of the southern Korean Peninsula using geologic and geomorphologic data, which are readily available for the entire southern Korean Peninsula. Class B sites (mainly rock) are predominant in the area, although localized areas of softer soils are found along major rivers and seashores. The site classification map is compared with independent site classification studies to confirm our site classification map effectively represents the local behavior of site amplification during an earthquake. We then estimated the losses due to a magnitude 6.7 scenario earthquake in Gyeongju, southeastern Korea, with and without the site classification map. Significant differences in loss estimates were observed. The loss without the site classification map decreased without variation with increasing epicentral distance, while the loss with the site classification map varied from region to region, due to both the epicentral distance and local site effects. The major cause of the large loss expected in Gyeongju is the short epicentral distance. Pohang Nam-Gu is located farther from the earthquake source region. Nonetheless, the loss estimates in the remote city are as large as those in Gyeongju and are attributed to the site effect of soft soil found widely in the area.

  9. An integrated multi criteria approach for landfill siting in a conflicting environmental, economical and socio-cultural area.

    PubMed

    Eskandari, Mahnaz; Homaee, Mehdi; Mahmodi, Shahla

    2012-08-01

    Landfill site selection is a complicated multi criteria land use planning that should convince all related stakeholders with different insights. This paper addresses an integrating approach for landfill siting based on conflicting opinions among environmental, economical and socio-cultural expertise. In order to gain optimized siting decision, the issue was investigated in different viewpoints. At first step based on opinion sampling and questionnaire results of 35 experts familiar with local situations, the national environmental legislations and international practices, 13 constraints and 15 factors were built in hierarchical structure. Factors divided into three environmental, economical and socio-cultural groups. In the next step, the GIS-database was developed based on the designated criteria. In the third stage, the criteria standardization and criteria weighting were accomplished. The relative importance weights of criteria and subcriteria were estimated, respectively, using analytical hierarchy process and rank ordering methods based on different experts opinions. Thereafter, by using simple additive weighting method, the suitability maps for landfill siting in Marvdasht, Iran, was evaluated in environmental, economical and socio-cultural visions. The importance of each group of criteria in its own vision was assigned to be higher than two other groups. In the fourth stage, the final suitability map was obtained after crossing three resulted maps in different visions and reported in five suitability classes for landfill construction. This map indicated that almost 1224 ha of the study area can be considered as best suitable class for landfill siting considering all visions. In the last stage, a comprehensive field visit was performed to verify the selected site obtained from the proposed model. This field inspection has confirmed the proposed integrating approach for the landfill siting. Copyright © 2012 Elsevier Ltd. All rights reserved.

  10. Mapping Rock and Soil Units in the MPF IMP SuperPan Using a Kohonen Self Organizing Map

    NASA Technical Reports Server (NTRS)

    Farrand, W.; Merenyi, E.; Murchie, S.; Barnouin-Jha, O.; Johnson, J.

    2004-01-01

    The 1997 Mars Pathfinder mission provided information on a site in the Ares Vallis floodplain. Initial analysis of multispectral data from the Imager for Mars Pathfinder (IMP) indicated the presence of only a single rock type, the 'gray rock' spectral class and various coated variants thereof (e.g., 'maroon rock'). Continued analysis of the IMP 'SuperPan' mosaic has confirmed multiple examples of a second 'black rock' spectral class existing as small cobbles in the near field and as boulders in the far field. These results are consistent with recent analysis of MGS Thermal Emission Spectrometer (TES) data which indicates that there is likely a mix of both 'Surface Type 1' (ST1) and 'Surface Type 2' (ST2) spectral classes at the MPF landing site. Nominally, the black rock spectral class would correspond to ST1 (basalts) and 'gray rock' would correspond to ST2 (andesites). Orbital remote sensing has also revealed the pervasive presence of layering on Mars. Recently it was suggested that there are extensive outcrops of the black rock spectral class in the SuperPan far field on the flanks of the Twin Peaks and on the rim of Big Crater. These authors suggested that these exposures represented outcrops of black rock from beneath a surficial, flood deposited layer. In this work, we have reexamined the MPF IMP SuperPan mosaic using an artificial neural network self organizing map (SOM) processing architecture in order to classify the distribution of spectral classes within the SuperPan. In this paper, we present initial results from that work and draw specific attention to a subset of the identified spectral classes in order to address questions relating to whether there are extensive exposures of black rock in the IMP far field, what other materials might be exposed in the far field, and what evidence there is for subsurface layering at the MPF landing site.

  11. On-site phytoremediation applicability assessment in Alur Ilmu, Universiti Kebangsaan Malaysia based on spatial and pollution removal analyses.

    PubMed

    Mahmud, Mohd Hafiyyan; Lee, Khai Ern; Goh, Thian Lai

    2017-10-01

    The present paper aims to assess the phytoremediation performance based on pollution removal efficiency of the highly polluted region of Alur Ilmu urban river for its applicability of on-site treatment. Thirteen stations along Alur Ilmu were selected to produce thematic maps through spatial distribution analysis based on six water quality parameters of Malaysia's Water Quality Index (WQI) for dry and raining seasons. The maps generated were used to identify the highly polluted region for phytoremediation applicability assessment. Four free-floating plants were tested in treating water samples from the highly polluted region under three different conditions, namely controlled, aerated and normal treatments. The selected free-floating plants were water hyacinth (Eichhornia crassipes), water lettuce (Pistia stratiotes), rose water lettuce (Pistia sp.) and pennywort (Centella asiatica). The results showed that Alur Ilmu was more polluted during dry season compared to raining season based on the water quality analysis. During dry season, four parameters were marked as polluted along Alur Ilmu, namely dissolve oxygen (DO), 4.72 mg/L (class III); ammoniacal nitrogen (NH 3 -N), 0.85 mg/L (class IV); total suspended solid (TSS), 402 mg/L (class V) and biological oxygen demand (BOD), 3.89 mg/L (class III), whereas, two parameters were classed as polluted during raining season, namely total suspended solid (TSS), 571 mg/L (class V) and biological oxygen demand (BOD), 4.01 mg/L (class III). The thematic maps generated from spatial distribution analysis using Kriging gridding method showed that the highly polluted region was recorded at station AL 5. Hence, water samples were taken from this station for pollution removal analysis. All the free-floating plants were able to reduce TSS and COD in less than 14 days. However, water hyacinth showed the least detrimental effect from the phytoremediation process compared to other free-floating plants, thus made it a suitable free-floating plants to be used for on-site treatment.

  12. Mapping raised bogs with an iterative one-class classification approach

    NASA Astrophysics Data System (ADS)

    Mack, Benjamin; Roscher, Ribana; Stenzel, Stefanie; Feilhauer, Hannes; Schmidtlein, Sebastian; Waske, Björn

    2016-10-01

    Land use and land cover maps are one of the most commonly used remote sensing products. In many applications the user only requires a map of one particular class of interest, e.g. a specific vegetation type or an invasive species. One-class classifiers are appealing alternatives to common supervised classifiers because they can be trained with labeled training data of the class of interest only. However, training an accurate one-class classification (OCC) model is challenging, particularly when facing a large image, a small class and few training samples. To tackle these problems we propose an iterative OCC approach. The presented approach uses a biased Support Vector Machine as core classifier. In an iterative pre-classification step a large part of the pixels not belonging to the class of interest is classified. The remaining data is classified by a final classifier with a novel model and threshold selection approach. The specific objective of our study is the classification of raised bogs in a study site in southeast Germany, using multi-seasonal RapidEye data and a small number of training sample. Results demonstrate that the iterative OCC outperforms other state of the art one-class classifiers and approaches for model selection. The study highlights the potential of the proposed approach for an efficient and improved mapping of small classes such as raised bogs. Overall the proposed approach constitutes a feasible approach and useful modification of a regular one-class classifier.

  13. Computational Prediction and Experimental Verification of New MAP Kinase Docking Sites and Substrates Including Gli Transcription Factors

    PubMed Central

    Whisenant, Thomas C.; Ho, David T.; Benz, Ryan W.; Rogers, Jeffrey S.; Kaake, Robyn M.; Gordon, Elizabeth A.; Huang, Lan; Baldi, Pierre; Bardwell, Lee

    2010-01-01

    In order to fully understand protein kinase networks, new methods are needed to identify regulators and substrates of kinases, especially for weakly expressed proteins. Here we have developed a hybrid computational search algorithm that combines machine learning and expert knowledge to identify kinase docking sites, and used this algorithm to search the human genome for novel MAP kinase substrates and regulators focused on the JNK family of MAP kinases. Predictions were tested by peptide array followed by rigorous biochemical verification with in vitro binding and kinase assays on wild-type and mutant proteins. Using this procedure, we found new ‘D-site’ class docking sites in previously known JNK substrates (hnRNP-K, PPM1J/PP2Czeta), as well as new JNK-interacting proteins (MLL4, NEIL1). Finally, we identified new D-site-dependent MAPK substrates, including the hedgehog-regulated transcription factors Gli1 and Gli3, suggesting that a direct connection between MAP kinase and hedgehog signaling may occur at the level of these key regulators. These results demonstrate that a genome-wide search for MAP kinase docking sites can be used to find new docking sites and substrates. PMID:20865152

  14. Skylab-EREP studies in computer mapping of terrain in the Cripple Creek-Canon City area of Colorado

    NASA Technical Reports Server (NTRS)

    Smedes, H. W.; Ranson, K. J.; Holstrom, R. L.

    1975-01-01

    Multispectral-scanner data from satellites are used as input to computers for automatically mapping terrain classes of ground cover. Some major problems faced in this remote-sensing task include: (1) the effect of mixtures of classes and, primarily because of mixtures, the problem of what constitutes accurate control data, and (2) effects of the atmosphere on spectral responses. The fundamental principles of these problems are presented along with results of studies of them for a test site of Colorado, using LANDSAT-1 data.

  15. Mapping "Chinese" Christian Schools in Indonesia: Ethnicity, Class and Religion

    ERIC Educational Resources Information Center

    Hoon, Chang-Yau

    2011-01-01

    Schools are not "innocent" sites of cultural transmission. They play an active and significant role in transmitting values and inculcating culture. Schools also serve as a site for the maintenance of boundaries and for the construction of identities. Previous studies have recognized the relationship between education and identity.…

  16. Development of a NEHRP site classification map of Chiang Mai city, Thailand, based on shear-wave velocity using the MASW technique

    NASA Astrophysics Data System (ADS)

    Thitimakorn, Thanop

    2013-08-01

    To account for site amplification and seismic hazard mapping, the shear-wave velocity (Vs) profile to a depth of 30 m (Vs (30)) is an important parameter and can be used to calculate the ground motion for specific site conditions. In this study, the near-surface Vs profiles of soils were collected at 44 sites in Chiang Mai city using the multi-channel analysis of surface-wave technique. The Vs of each tested location was average weighted to Vs (30) based on the National Earthquake Hazards Reduction Program (NEHRP) criteria. The average Vs (30) value of the alluvium soils was about 362 m s-1, which falls between NEHRP site classes C and D. The average Vs (30) values of flood plain, fluvial clay and natural levee soils (at 300, 299 and 311 m s-1, respectively) all equated to NEHRP class D. The colluvial deposits in the north-western part of the city were mainly composed of gravel, coarse sand and rock fragments, and were assigned to class C (average Vs (30) of 412 m s-1). Soils with lower Vs values will experience higher earthquake ground shaking than those of the bedrock. Accordingly the major part of Chiang Mai city may experience substantial ground shaking due to the amplification in the soft soils.

  17. Mapping site index and volume increment from forest inventory, Landsat, and ecological variables in Tahoe National Forest, California, USA

    USGS Publications Warehouse

    Huang, Shengli; Ramirez, Carlos; Conway, Scott; Kennedy, Kama; Kohler, Tanya; Liu, Jinxun

    2016-01-01

    High-resolution site index (SI) and mean annual increment (MAI) maps are desired for local forest management. We integrated field inventory, Landsat, and ecological variables to produce 30 m SI and MAI maps for the Tahoe National Forest (TNF) where different tree species coexist. We converted species-specific SI using adjustment factors. Then, the SI map was produced by (i) intensifying plots to expand the training sets to more climatic, topographic, soil, and forest reflective classes, (ii) using results from a stepwise regression to enable a weighted imputation that minimized the effects of outlier plots within classes, and (iii) local interpolation and strata median filling to assign values to pixels without direct imputations. The SI (reference age is 50 years) map had an R2 of 0.7637, a root-mean-square error (RMSE) of 3.60, and a mean absolute error (MAE) of 3.07 m. The MAI map was similarly produced with an R2 of 0.6882, an RMSE of 1.73, and a MAE of 1.20 m3·ha−1·year−1. Spatial patterns and trends of SI and MAI were analyzed to be related to elevation, aspect, slope, soil productivity, and forest type. The 30 m SI and MAI maps can be used to support decisions on fire, plantation, biodiversity, and carbon.

  18. Database and online map service on unstable rock slopes in Norway - From data perpetuation to public information

    NASA Astrophysics Data System (ADS)

    Oppikofer, Thierry; Nordahl, Bobo; Bunkholt, Halvor; Nicolaisen, Magnus; Jarna, Alexandra; Iversen, Sverre; Hermanns, Reginald L.; Böhme, Martina; Yugsi Molina, Freddy X.

    2015-11-01

    The unstable rock slope database is developed and maintained by the Geological Survey of Norway as part of the systematic mapping of unstable rock slopes in Norway. This mapping aims to detect catastrophic rock slope failures before they occur. More than 250 unstable slopes with post-glacial deformation are detected up to now. The main aims of the unstable rock slope database are (1) to serve as a national archive for unstable rock slopes in Norway; (2) to serve for data collection and storage during field mapping; (3) to provide decision-makers with hazard zones and other necessary information on unstable rock slopes for land-use planning and mitigation; and (4) to inform the public through an online map service. The database is organized hierarchically with a main point for each unstable rock slope to which several feature classes and tables are linked. This main point feature class includes several general attributes of the unstable rock slopes, such as site name, general and geological descriptions, executed works, recommendations, technical parameters (volume, lithology, mechanism and others), displacement rates, possible consequences, as well as hazard and risk classification. Feature classes and tables linked to the main feature class include different scenarios of an unstable rock slope, field observation points, sampling points for dating, displacement measurement stations, lineaments, unstable areas, run-out areas, areas affected by secondary effects, along with tables for hazard and risk classification and URL links to further documentation and references. The database on unstable rock slopes in Norway will be publicly consultable through an online map service. Factsheets with key information on unstable rock slopes can be automatically generated and downloaded for each site. Areas of possible rock avalanche run-out and their secondary effects displayed in the online map service, along with hazard and risk assessments, will become important tools for land-use planning. The present database will further evolve in the coming years as the systematic mapping progresses and as available techniques and tools evolve.

  19. PEER Site Map

    Science.gov Websites

    * PEER's Industry Partners * PEER's Educational Affiliates * History of PEER * Technology Transfer * Annual * PEER's Educational Affiliates * Student Design Competition * Student Leadership Council * Classes and Other Educational Activities Frequently Asked Questions Links - Important Earthquake Engineering

  20. Analysis of MASTER Thermal Data in the Greeley Area of the Front Range Urban Corridor, Colorado--Delineation of Sites for Infrastructure Resource Characterization

    USGS Publications Warehouse

    Livo, K. Eric; Watson, Ken

    2002-01-01

    Sand and soils southwest of Greeley, Colorado, were characterized for mineral composition and industrial quality. Radi-ance data from the thermal channels of the MASTER simulator were calibrated using estimated atmospheric parameters. Chan-nel emissivities were approximated using an estimated ground temperature. Subsequently, a decorrelation algorithm was used to calculate inverse wave emissivity images. Six soil classes, one vegetation class, water, and several small classes were defined using an unsupervised classification algorithm. Ground covered by each of the derived emissivity spectral classes was studied using color-infrared air photos, color-infrared composite MAS-TER data, geologic maps, NASA/JPL Airborne Visible and Infra-red Imaging Spectrometer (AVIRIS) data, and field examination. Spectral classes were characterized by their responses and related to their mineral content through field examination. Classes with a minimum at channel 44, and having a similar spectral shape to quartz, field checked as containing abundant quartz. Classes with a minimum at channel 45, and having a spectral shape similar to the sheet minerals, were found in the field to contain abundant mica and clay. Sandy soil was found to have a positive slope at the longer wavelengths; the more clay rich soils had a negative slope. Spectra with a strong downturn at channel 50 generally indicated low vegetation cover, whereas an upturn indicated more vegetation cover. Mapping revealed a range of classified soils with varying amounts of quartz, silt, clay, and plant humus. Sand and gravel operations along the St. Vrain River, gravel lots, and some fields spectrally classified as quartz-rich sands were confirmed through field examination. Other fields mapped as sandy soils, ranging from quartz-rich sandy soil to quartz-rich silt-sand soil with clay. Flood plains mapped as sandy-silty-organic-rich clay. The city of Greeley contained all classes of materials, with the sand classes mapping as various types of asphalt. Abundant quartz gravel was apparent within the asphalt during field check-ing. The clay classes mapped silt-clay soils in areas of irrigated grass landscaping, some fields, and roofing materials.

  1. VS30 – A site-characterization parameter for use in building Codes, simplified earthquake resistant design, GMPEs, and ShakeMaps

    USGS Publications Warehouse

    Borcherdt, Roger D.

    2012-01-01

    VS30, defined as the average seismic shear-wave velocity from the surface to a depth of 30 meters, has found wide-spread use as a parameter to characterize site response for simplified earthquake resistant design as implemented in building codes worldwide. VS30 , as initially introduced by the author for the US 1994 NEHRP Building Code, provides unambiguous definitions of site classes and site coefficients for site-dependent response spectra based on correlations derived from extensive borehole logging and comparative ground-motion measurement programs in California. Subsequent use of VS30 for development of strong ground motion prediction equations (GMPEs) and measurement of extensive sets of VS borehole data have confirmed the previous empirical correlations and established correlations of SVS30 with VSZ at other depths. These correlations provide closed form expressions to predict S30 V at a large number of additional sites and further justify S30 V as a parameter to characterize site response for simplified building codes, GMPEs, ShakeMap, and seismic hazard mapping.

  2. Archaeological Data Recovery in the Abiquiu Reservoir Multiple Resource Area, New Mexico,

    DTIC Science & Technology

    1982-09-01

    location probably does not represent a locus of past human activity. Iso i .... .. 2 *1 . .. . .A LA27006 (AR56) Description: The site is a small...25566 27021 27047 25378 No topo map location for site (n 3) 27001 27002 27037 118 TABLE 10 ESTIMATED AND ACTUAL FREQUENCIES OF ARTIFACT CLASSES AT

  3. The Earth Observation Data for Habitat Monitoring (EODHaM) system

    NASA Astrophysics Data System (ADS)

    Lucas, Richard; Blonda, Palma; Bunting, Peter; Jones, Gwawr; Inglada, Jordi; Arias, Marcela; Kosmidou, Vasiliki; Petrou, Zisis I.; Manakos, Ioannis; Adamo, Maria; Charnock, Rebecca; Tarantino, Cristina; Mücher, Caspar A.; Jongman, Rob H. G.; Kramer, Henk; Arvor, Damien; Honrado, Joāo Pradinho; Mairota, Paola

    2015-05-01

    To support decisions relating to the use and conservation of protected areas and surrounds, the EU-funded BIOdiversity multi-SOurce monitoring System: from Space TO Species (BIO_SOS) project has developed the Earth Observation Data for HAbitat Monitoring (EODHaM) system for consistent mapping and monitoring of biodiversity. The EODHaM approach has adopted the Food and Agriculture Organization Land Cover Classification System (LCCS) taxonomy and translates mapped classes to General Habitat Categories (GHCs) from which Annex I habitats (EU Habitats Directive) can be defined. The EODHaM system uses a combination of pixel and object-based procedures. The 1st and 2nd stages use earth observation (EO) data alone with expert knowledge to generate classes according to the LCCS taxonomy (Levels 1 to 3 and beyond). The 3rd stage translates the final LCCS classes into GHCs from which Annex I habitat type maps are derived. An additional module quantifies changes in the LCCS classes and their components, indices derived from earth observation, object sizes and dimensions and the translated habitat maps (i.e., GHCs or Annex I). Examples are provided of the application of EODHaM system elements to protected sites and their surrounds in Italy, Wales (UK), the Netherlands, Greece, Portugal and India.

  4. Applied regional monitoring of the vernal advancement and retrogradation (Green wave effect) of natural vegetation in the Great Plains corridor. [Texas and Oklahoma

    NASA Technical Reports Server (NTRS)

    Rouse, J. W., Jr. (Principal Investigator)

    1976-01-01

    The author has identified the following significant results. A TV16 isoline map at the 6.25 million hectare extended test site area in north central Texas and southern Oklahoma was produced. The map was compared to a published USDA Statistical Reporting Service map, which shows pasture and range feed conditions, as reported by rancher respondents. Both maps show similar areas of drought stress and good to excellent forage conditions, but preliminary indications are that the LANDSAT-derived map more accurately depicts the areal extent of each condition class.

  5. Preventative Reading Interventions Teaching Direct Mapping of Graphemes in Texts and Set-for-Variability Aid At-Risk Learners

    ERIC Educational Resources Information Center

    Savage, Robert; Georgiou, George; Parrila, Rauno; Maiorino, Kristina

    2018-01-01

    We evaluated two experimenter-delivered, small-group word reading programs among at-risk poor readers in Grade 1 classes of regular elementary schools using a two-arm, dual-site-matched control trial intervention. At-risk poor word readers (n = 201) were allocated to either (a) Direct Mapping and Set-for-Variability (DMSfV) or (b) Current or…

  6. Genomic organization of the 260 kb surrounding the waxy locus in a Japonica rice

    PubMed

    Nagano; Wu; Kawasaki; Kishima; Sano

    1999-12-01

    The present study was carried out to characterize the molecular organization in the vicinity of the waxy locus in rice. To determine the structural organization of the region surrounding waxy, contiguous clones covering a total of 260 kb were constructed using a bacterial artificial chromosome (BAC) library from the Shimokita variety of Japonica rice. This map also contains 200 overlapping subclones, which allowed construction of a fine physical map with a total of 64 HindIII sites. During the course of constructing the map, we noticed the presence of some repeated regions which might be related to transposable elements. We divided the 260-kb region into 60 segments (average size of 5.7 kb) to use as probes to determine their genomic organization. Hybridization patterns obtained by probing with these segments were classified into four types: class 1, a single or a few bands without a smeared background; class 2, a single or a few bands with a smeared background; class 3, multiple discrete bands without a smeared background; and class 4, only a smeared background. These classes constituted 6.5%, 20.9%, 3.7%, and 68.9% of the 260-kb region, respectively. The distribution of each class revealed that repetitive sequences are a major component in this region, as expected, and that unique sequence regions were mostly no longer than 6 kb due to interruption by repetitive sequences. We discuss how the map constructed here might be a powerful tool for characterization and comparison of the genome structures and the genes around the waxy locus in the Oryza species.

  7. Acquisition of background and technical information and class trip planning

    NASA Technical Reports Server (NTRS)

    Mackinnon, R. M.; Wake, W. H.

    1981-01-01

    Instructors who are very familiar with a study area, as well as those who are not, find the field trip information acquisition and planning process speeded and made more effective by organizing it in stages. The stage follow a deductive progression: from the associated context region, to the study area, to the specific sample window sites, and from generalized background information on the study region to specific technical data on the environmental and human use systems to be interpreted at each site. On the class trip and in the follow up laboratory, the learning/interpretive process are at first deductive in applying previously learned information and skills to analysis of the study site, then inductive in reading and interpreting the landscape, imagery, and maps of the site, correlating them with information of other samples sites and building valid generalizations about the larger study area, its context region, and other (similar and/or contrasting) regions.

  8. U.S. EPAs Geospatial Data Access Project

    EPA Pesticide Factsheets

    To improve public health and the environment, the United States Environmental Protection Agency (EPA) collects information about facilities, sites, or places subject to environmental regulation or of environmental interest. Through the Geospatial Data Download Service, the public is now able to download the EPA Geodata Shapefile, Feature Class or extensible markup language (XML) file containing facility and site information from EPA's national program systems. The files are Internet accessible from the Envirofacts Web site (https://www3.epa.gov/enviro/). The data may be used with geospatial mapping applications. (Note: The files omit facilities without latitude/longitude coordinates.) The EPA Geospatial Data contains the name, location (latitude/longitude), and EPA program information about specific facilities and sites. In addition, the files contain a Uniform Resource Locator (URL), which allows mapping applications to present an option to users to access additional EPA data resources on a specific facility or site.

  9. Analysis of recreational land using Skylab data. [Gratiot-Saginaw State Game Area, Michigan

    NASA Technical Reports Server (NTRS)

    Sattinger, I. J. (Principal Investigator); Sadowski, F. G.; Roller, N. E. G.

    1976-01-01

    The author has identified the following significant results. S192 data collected on 5 August 1973 were processed by computer to produce a classification map of a part of the Gratiot-Saginaw State Game Area in south central Michigan. A 10-category map was prepared of an area consisting of diverse terrain types, including forests, wetlands, brush, and herbaceous vegetation. An accuracy check indicated that 54% of the pixels were correctly recognized. When these ten scene classes were consolidated to a 5-category map, the accuracy increased to 72%. S190 A, S190 B, and S192 data can be used for regional surveys of existing and potential recreation sites, for delineation of open space, and for preliminary evaluation of geographically extensive sites.

  10. Automatic Computer Mapping of Terrain

    NASA Technical Reports Server (NTRS)

    Smedes, H. W.

    1971-01-01

    Computer processing of 17 wavelength bands of visible, reflective infrared, and thermal infrared scanner spectrometer data, and of three wavelength bands derived from color aerial film has resulted in successful automatic computer mapping of eight or more terrain classes in a Yellowstone National Park test site. The tests involved: (1) supervised and non-supervised computer programs; (2) special preprocessing of the scanner data to reduce computer processing time and cost, and improve the accuracy; and (3) studies of the effectiveness of the proposed Earth Resources Technology Satellite (ERTS) data channels in the automatic mapping of the same terrain, based on simulations, using the same set of scanner data. The following terrain classes have been mapped with greater than 80 percent accuracy in a 12-square-mile area with 1,800 feet of relief; (1) bedrock exposures, (2) vegetated rock rubble, (3) talus, (4) glacial kame meadow, (5) glacial till meadow, (6) forest, (7) bog, and (8) water. In addition, shadows of clouds and cliffs are depicted, but were greatly reduced by using preprocessing techniques.

  11. Evaluation of ERTS-1 imagery in mapping and managing soil and range resources in the Sand Hills Region of Nebraska

    NASA Technical Reports Server (NTRS)

    Seevers, P. M.; Drew, J. V.

    1973-01-01

    Interpretations of high altitude photography of test sites in the Sandhills of Nebraska permitted identification of subirrigated range sites as well as complexes of choppy sands and sands range sites, units composing approximately 85% of the Sandhills rangeland. These range sites form the basic units necessary for the interpretation of range condition classes used in grazing management. Analysis of ERTS-1 imagery acquired during August, September and October, 1972 indicated potential for the identification of gross differences in forage density within given range sites identified on early season aerial photography.

  12. A soil map of a large watershed in China: applying digital soil mapping in a data sparse region

    NASA Astrophysics Data System (ADS)

    Barthold, F.; Blank, B.; Wiesmeier, M.; Breuer, L.; Frede, H.-G.

    2009-04-01

    Prediction of soil classes in data sparse regions is a major research challenge. With the advent of machine learning the possibilities to spatially predict soil classes have increased tremendously and given birth to new possibilities in soil mapping. Digital soil mapping is a research field that has been established during the last decades and has been accepted widely. We now need to develop tools to reduce the uncertainty in soil predictions. This is especially challenging in data sparse regions. One approach to do this is to implement soil taxonomic distance as a classification error criterion in classification and regression trees (CART) as suggested by Minasny et al. (Geoderma 142 (2007) 285-293). This approach assumes that the classification error should be larger between soils that are more dissimilar, i.e. differ in a larger number of soil properties, and smaller between more similar soils. Our study area is the Xilin River Basin, which is located in central Inner Mongolia in China. It is characterized by semi arid climate conditions and is representative for the natural occurring steppe ecosystem. The study area comprises 3600 km2. We applied a random, stratified sampling design after McKenzie and Ryan (Geoderma 89 (1999) 67-94) with landuse and topography as stratifying variables. We defined 10 sampling classes, from each class 14 replicates were randomly drawn and sampled. The dataset was split into 100 soil profiles for training and 40 soil profiles for validation. We then applied classification and regression trees (CART) to quantify the relationships between soil classes and environmental covariates. The classification tree explained 75.5% of the variance with land use and geology as most important predictor variables. Among the 8 soil classes that we predicted, the Kastanozems cover most of the area. They are predominantly found in steppe areas. However, even some of the soils at sand dune sites, which were thought to show only little soil formation, can be classified as Kastanozems. Besides the Kastanozems, Regosols are most common at the sand dune sites as well as at sites that are defined as bare soil which are characterized by little or no vegetation. Gleysols are mostly found at sites in the vicinity of the Xilin river, which are connected to the groundwater. They can also be found in small valleys or depressions where sub-surface waters from neighboring areas collect. The richest soils are found in mountain meadow areas. Pedogenetic conditions here are most favorable and lead to the formation of Chernozems with deep humic Ah horizons. Other soil types that occur in the study area are Arenosols, Calcisols, Cambisol and Phaeozems. In addition, soil taxonomic distance is implemented into the decision tree procedure as a measure of classification error. The results of incorporating taxonomic distance as a loss function in the decision tree will be compared with the standard application of the decision tree.

  13. Microzonation Mapping Of The Yanbu Industrial City, Western Saudi Arabia: A Multicriteria Decision Analysis Approach

    NASA Astrophysics Data System (ADS)

    Moustafa, Sayed, Sr.; Alarifi, Nassir S.; Lashin, Aref A.

    2016-04-01

    Urban areas along the western coast of Saudi Arabia are susceptible to natural disasters and environmental damages due to lack of planning. To produce a site-specific microzonation map of the rapidly growing Yanbu industrial city, spatial distribution of different hazard entities are assessed using the Analytical Hierarchal Process (AHP) together with Geographical Information System (GIS). For this purpose six hazard parameter layers are considered, namely; fundamental frequency, site amplification, soil strength in terms of effective shear-wave velocity, overburden sediment thickness, seismic vulnerability index and peak ground acceleration. The weight and rank values are determined during AHP and are assigned to each layer and its corresponding classes, respectively. An integrated seismic microzonation map was derived using GIS platform. Based on the derived map, the study area is classified into five hazard categories: very low, low, moderate high, and very high. The western and central parts of the study area, as indicated from the derived microzonation map, are categorized as a high hazard zone as compared to other surrounding places. The produced microzonation map of the current study is envisaged as a first-level assessment of the site specific hazards in the Yanbu city area, which can be used as a platform by different stakeholders in any future land-use planning and environmental hazard management.

  14. Using digital soil maps to infer edaphic affinities of plant species in Amazonia: Problems and prospects.

    PubMed

    Moulatlet, Gabriel Massaine; Zuquim, Gabriela; Figueiredo, Fernando Oliveira Gouvêa; Lehtonen, Samuli; Emilio, Thaise; Ruokolainen, Kalle; Tuomisto, Hanna

    2017-10-01

    Amazonia combines semi-continental size with difficult access, so both current ranges of species and their ability to cope with environmental change have to be inferred from sparse field data. Although efficient techniques for modeling species distributions on the basis of a small number of species occurrences exist, their success depends on the availability of relevant environmental data layers. Soil data are important in this context, because soil properties have been found to determine plant occurrence patterns in Amazonian lowlands at all spatial scales. Here we evaluate the potential for this purpose of three digital soil maps that are freely available online: SOTERLAC, HWSD, and SoilGrids. We first tested how well they reflect local soil cation concentration as documented with 1,500 widely distributed soil samples. We found that measured soil cation concentration differed by up to two orders of magnitude between sites mapped into the same soil class. The best map-based predictor of local soil cation concentration was obtained with a regression model combining soil classes from HWSD with cation exchange capacity (CEC) from SoilGrids. Next, we evaluated to what degree the known edaphic affinities of thirteen plant species (as documented with field data from 1,200 of the soil sample sites) can be inferred from the soil maps. The species segregated clearly along the soil cation concentration gradient in the field, but only partially along the model-estimated cation concentration gradient, and hardly at all along the mapped CEC gradient. The main problems reducing the predictive ability of the soil maps were insufficient spatial resolution and/or georeferencing errors combined with thematic inaccuracy and absence of the most relevant edaphic variables. Addressing these problems would provide better models of the edaphic environment for ecological studies in Amazonia.

  15. Mapping forest vegetation with ERTS-1 MSS data and automatic data processing techniques

    NASA Technical Reports Server (NTRS)

    Messmore, J.; Copeland, G. E.; Levy, G. F.

    1975-01-01

    This study was undertaken with the intent of elucidating the forest mapping capabilities of ERTS-1 MSS data when analyzed with the aid of LARS' automatic data processing techniques. The site for this investigation was the Great Dismal Swamp, a 210,000 acre wilderness area located on the Middle Atlantic coastal plain. Due to inadequate ground truth information on the distribution of vegetation within the swamp, an unsupervised classification scheme was utilized. Initially pictureprints, resembling low resolution photographs, were generated in each of the four ERTS-1 channels. Data found within rectangular training fields was then clustered into 13 spectral groups and defined statistically. Using a maximum likelihood classification scheme, the unknown data points were subsequently classified into one of the designated training classes. Training field data was classified with a high degree of accuracy (greater than 95%), and progress is being made towards identifying the mapped spectral classes.

  16. Mapping forest vegetation with ERTS-1 MSS data and automatic data processing techniques

    NASA Technical Reports Server (NTRS)

    Messmore, J.; Copeland, G. E.; Levy, G. F.

    1975-01-01

    This study was undertaken with the intent of elucidating the forest mapping capabilities of ERTS-1 MSS data when analyzed with the aid of LARS' automatic data processing techniques. The site for this investigation was the Great Dismal Swamp, a 210,000 acre wilderness area located on the Middle Atlantic coastal plain. Due to inadequate ground truth information on the distribution of vegetation within the swamp, an unsupervised classification scheme was utilized. Initially pictureprints, resembling low resolution photographs, were generated in each of the four ERTS-1 channels. Data found within rectangular training fields was then clustered into 13 spectral groups and defined statistically. Using a maximum likelihood classification scheme, the unknown data points were subsequently classified into one of the designated training classes. Training field data was classified with a high degree of accuracy (greater than 95 percent), and progress is being made towards identifying the mapped spectral classes.

  17. Development and application of operational techniques for the inventory and monitoring of resources and uses for the Texas coastal zone. Volume 1: Text

    NASA Technical Reports Server (NTRS)

    Harwood, P. (Principal Investigator); Finley, R.; Mcculloch, S.; Malin, P. A.; Schell, J. A.

    1977-01-01

    The author has identified the following significant results. Image interpretation and computer-assisted techniques were developed to analyze LANDSAT scenes in support of resource inventory and monitoring requirements for the Texas coastal region. Land cover and land use maps, at a scale of 1:125,000 for the image interpretation product and 1:24,000 for the computer-assisted product, were generated covering four Texas coastal test sites. Classification schemes which parallel national systems were developed for each procedure, including 23 classes for image interpretation technique and 13 classes for the computer-assisted technique. Results indicate that LANDSAT-derived land cover and land use maps can be successfully applied to a variety of planning and management activities on the Texas coast. Computer-derived land/water maps can be used with tide gage data to assess shoreline boundaries for management purposes.

  18. Comparison of measurement- and proxy-based Vs30 values in California

    USGS Publications Warehouse

    Yong, Alan K.

    2016-01-01

    This study was prompted by the recent availability of a significant amount of openly accessible measured VS30 values and the desire to investigate the trend of using proxy-based models to predict VS30 in the absence of measurements. Comparisons between measured and model-based values were performed. The measured data included 503 VS30 values collected from various projects for 482 seismographic station sites in California. Six proxy-based models—employing geologic mapping, topographic slope, and terrain classification—were also considered. Included was a new terrain class model based on the Yong et al. (2012) approach but recalibrated with updated measured VS30 values. Using the measured VS30 data as the metric for performance, the predictive capabilities of the six models were determined to be statistically indistinguishable. This study also found three models that tend to underpredict VS30 at lower velocities (NEHRP Site Classes D–E) and overpredict at higher velocities (Site Classes B–C).

  19. Terminology modeling for an enterprise laboratory orders catalog.

    PubMed

    Zhou, Li; Goldberg, Howard; Pabbathi, Deepika; Wright, Adam; Goldman, Debora S; Van Putten, Cheryl; Barley, Amanda; Rocha, Roberto A

    2009-11-14

    Laboratory test orders are used in a variety of clinical information systems at Partners HealthCare. At present, each site at Partners manages its own set of laboratory orders with locally defined codes. Our current plan is to implement an enterprise catalog, where laboratory test orders are mapped to reference terminologies and codes from different sites are mapped to each other. This paper describes the terminology modeling effort that preceded the implementation of the enterprise laboratory orders catalog. In particular, we present our experience in adapting HL7's "Common Terminology Services 2 - Upper Level Class Model" as a terminology metamodel for guiding the development of fully specified laboratory orders and related services.

  20. Terminology Modeling for an Enterprise Laboratory Orders Catalog

    PubMed Central

    Zhou, Li; Goldberg, Howard; Pabbathi, Deepika; Wright, Adam; Goldman, Debora S.; Van Putten, Cheryl; Barley, Amanda; Rocha, Roberto A.

    2009-01-01

    Laboratory test orders are used in a variety of clinical information systems at Partners HealthCare. At present, each site at Partners manages its own set of laboratory orders with locally defined codes. Our current plan is to implement an enterprise catalog, where laboratory test orders are mapped to reference terminologies and codes from different sites are mapped to each other. This paper describes the terminology modeling effort that preceded the implementation of the enterprise laboratory orders catalog. In particular, we present our experience in adapting HL7’s “Common Terminology Services 2 – Upper Level Class Model” as a terminology metamodel for guiding the development of fully specified laboratory orders and related services. PMID:20351950

  1. Climate Prediction Center - monthly Outlook

    Science.gov Websites

    Weather Service NWS logo - Click to go to the NWS home page Climate Prediction Center Site Map News Outlooks monthly Climate Outlooks Banner OFFICIAL Forecasts June 2018 [UPDATED MONTHLY FORECASTS SERVICE CHANGE NOTICE] [EXPERIMENTAL TWO-CLASS SEASONAL FORECASTS] Text-Format Discussions Monthly Long Lead 30

  2. Proposal to evaluate the use of ERTS-A imagery in mapping and managing soil and range resources in the Sand Hills Region of Nebraska

    NASA Technical Reports Server (NTRS)

    Drew, J. V. (Principal Investigator)

    1973-01-01

    The author has identified the following significant results. There appears to be a direct relationship between densitometry values obtained with MSS band 5 imagery and forage density for those range sites measured on the imagery, provided site category identification is indicated by other forms of imagery or ground truth. Overlap of density values for different site categories with differing forage condition classes does not allow assigning a given forage density value for a given densitometer value unless the range site category is known.

  3. Database on unstable rock slopes in Norway

    NASA Astrophysics Data System (ADS)

    Oppikofer, Thierry; Nordahl, Bo; Bunkholt, Halvor; Nicolaisen, Magnus; Hermanns, Reginald L.; Böhme, Martina; Yugsi Molina, Freddy X.

    2014-05-01

    Several large rockslides have occurred in historic times in Norway causing many casualties. Most of these casualties are due to displacement waves triggered by a rock avalanche and affecting coast lines of entire lakes and fjords. The Geological Survey of Norway performs systematic mapping of unstable rock slopes in Norway and has detected up to now more than 230 unstable slopes with significant postglacial deformation. This systematic mapping aims to detect future rock avalanches before they occur. The registered unstable rock slopes are stored in a database on unstable rock slopes developed and maintained by the Geological Survey of Norway. The main aims of this database are (1) to serve as a national archive for unstable rock slopes in Norway; (2) to serve for data collection and storage during field mapping; (3) to provide decision-makers with hazard zones and other necessary information on unstable rock slopes for land-use planning and mitigation; and (4) to inform the public through an online map service. The database is organized hierarchically with a main point for each unstable rock slope to which several feature classes and tables are linked. This main point feature class includes several general attributes of the unstable rock slopes, such as site name, general and geological descriptions, executed works, recommendations, technical parameters (volume, lithology, mechanism and others), displacement rates, possible consequences, hazard and risk classification and so on. Feature classes and tables linked to the main feature class include the run-out area, the area effected by secondary effects, the hazard and risk classification, subareas and scenarios of an unstable rock slope, field observation points, displacement measurement stations, URL links for further documentation and references. The database on unstable rock slopes in Norway will be publicly consultable through the online map service on www.skrednett.no in 2014. Only publicly relevant parts of the database will be shown in the online map service (e.g. processed results of displacement measurements), while more detailed data will not (e.g. raw data of displacement measurements). Factsheets with key information on unstable rock slopes can be automatically generated and downloaded for each site, a municipality, a county or the entire country. Selected data will also be downloadable free of charge. The present database on unstable rock slopes in Norway will further evolve in the coming years as the systematic mapping conducted by the Geological Survey of Norway progresses and as available techniques and tools evolve.

  4. A comparison of top-down and bottom-up approaches to benthic habitat mapping to inform offshore wind energy development

    NASA Astrophysics Data System (ADS)

    LaFrance, Monique; King, John W.; Oakley, Bryan A.; Pratt, Sheldon

    2014-07-01

    Recent interest in offshore renewable energy within the United States has amplified the need for marine spatial planning to direct management strategies and address competing user demands. To assist this effort in Rhode Island, benthic habitat classification maps were developed for two sites in offshore waters being considered for wind turbine installation. Maps characterizing and representing the distribution and extent of benthic habitats are valuable tools for improving understanding of ecosystem patterns and processes, and promoting scientifically-sound management decisions. This project presented the opportunity to conduct a comparison of the methodologies and resulting map outputs of two classification approaches, “top-down” and “bottom-up” in the two study areas. This comparison was undertaken to improve understanding of mapping methodologies and their applicability, including the bottom-up approach in offshore environments where data density tends to be lower, as well as to provide case studies for scientists and managers to consider for their own areas of interest. Such case studies can offer guidance for future work for assessing methodologies and translating them to other areas. The traditional top-down mapping approach identifies biological community patterns based on communities occurring within geologically defined habitat map units, under the concept that geologic environments contain distinct biological assemblages. Alternatively, the bottom-up approach aims to establish habitat map units centered on biological similarity and then uses statistics to identify relationships with associated environmental parameters and determine habitat boundaries. When applied to the two study areas, both mapping approaches produced habitat classes with distinct macrofaunal assemblages and each established statistically strong and significant biotic-abiotic relationships with geologic features, sediment characteristics, water depth, and/or habitat heterogeneity over various spatial scales. The approaches were also able to integrate various data at differing spatial resolutions. The classification outputs exhibited similar results, including the number of habitat classes generated, the number of species defining the classes, the level of distinction of the biological communities, and dominance by tube-building amphipods. These results indicate that both approaches are able to discern a comparable degree of habitat variability and produce cohesive macrofaunal assemblages. The mapping approaches identify broadly similar benthic habitats at the two study sites and methods were able to distinguish the differing levels of heterogeneity between them. The top-down approach to habitat classification was faster and simpler to accomplish with the data available in this study when compared to the bottom-up approach. Additionally, the top-down approach generated full-coverage habitat classes that are clearly delineated and can easily be interpreted by the map user, which is desirable from a management perspective for providing a more complete assessment of the areas of interest. However, a higher level of biological variability was noted in some of the habitat classes created, indicating that the biological communities present in this area are influenced by factors not captured in the broad-scale geological habitat units used in this approach. The bottom-up approach was valuable in its ability to more clearly define macrofaunal assemblages among habitats, discern finer-scale habitat characteristics, and directly assess the degree of macrofaunal assemblage variability captured by the environmental parameters. From a user perspective, the map is more complex, which may be perceived as a limitation, though likely reflects natural gradations in habitat structure and likely presents a more ecologically realistic portrayal of the study areas. Though more comprehensive, the bottom-up approach in this study was limited by the reliance on full-coverage data to create full-coverage habitat classes. Such classes could only be developed when sediment data was excluded, since this point-sample dataset could not be interpolated due to high spatial heterogeneity of the study areas. Given a higher density of bottom samples, this issue could be rectified. While the top-down approach was more appropriate for this study, both approaches were found to be suitable for mapping and classifying benthic habitats. In the United States, objectives for mapping and classification for renewable energy development have not been well established. Therefore, at this time, the best-suited approach primarily depends on mapping objectives, resource availability, data quality and coverage, and geographical location, as these factors impact the types of data included, the analyses and modeling that can be performed, and the biotic-abiotic relationships identified.

  5. Agricultural land use mapping. [Pennsylvania, Montana, and Texas

    NASA Technical Reports Server (NTRS)

    Mcmurtry, G. J.; Petersen, G. W. (Principal Investigator); Wilson, A. D.

    1973-01-01

    The author has identified the following significant results. Agricultural areas were selected or analysis in southeastern Pennsylvania, north central Montana, and southern Texas. These three sites represent a broad range of soils, soil parent materials, climate, modes of agricultural operation, crops, and field sizes. In each of these three sites, ERTS-1 digital data were processed to determine the feasibility of automatically mapping agricultural land use. In Pennsylvania, forest land, cultivated land, and water were separable within a 25,000 acre area. Four classes of water were also classified and identified, using ground truth. A less complex land use pattern was analyzed in Hill County, Montana. A land use map was prepared shown alternating patterns of summer fallow and stubble fields. The location of farmsteads could be inferred, along with that of a railroad line. A river and a creek flowing into the river were discernible. Six categories of water, related to sediment content and depth, were defined in the reservoir held by the Fresno dam. These classifications were completed on a 150 square mile area. Analysis of the data from Texas is in its formative stages. A test site has been selected and a brightness map has been produced.

  6. Neural networks for learning and prediction with applications to remote sensing and speech perception

    NASA Astrophysics Data System (ADS)

    Gjaja, Marin N.

    1997-11-01

    Neural networks for supervised and unsupervised learning are developed and applied to problems in remote sensing, continuous map learning, and speech perception. Adaptive Resonance Theory (ART) models are real-time neural networks for category learning, pattern recognition, and prediction. Unsupervised fuzzy ART networks synthesize fuzzy logic and neural networks, and supervised ARTMAP networks incorporate ART modules for prediction and classification. New ART and ARTMAP methods resulting from analyses of data structure, parameter specification, and category selection are developed. Architectural modifications providing flexibility for a variety of applications are also introduced and explored. A new methodology for automatic mapping from Landsat Thematic Mapper (TM) and terrain data, based on fuzzy ARTMAP, is developed. System capabilities are tested on a challenging remote sensing problem, prediction of vegetation classes in the Cleveland National Forest from spectral and terrain features. After training at the pixel level, performance is tested at the stand level, using sites not seen during training. Results are compared to those of maximum likelihood classifiers, back propagation neural networks, and K-nearest neighbor algorithms. Best performance is obtained using a hybrid system based on a convex combination of fuzzy ARTMAP and maximum likelihood predictions. This work forms the foundation for additional studies exploring fuzzy ARTMAP's capability to estimate class mixture composition for non-homogeneous sites. Exploratory simulations apply ARTMAP to the problem of learning continuous multidimensional mappings. A novel system architecture retains basic ARTMAP properties of incremental and fast learning in an on-line setting while adding components to solve this class of problems. The perceptual magnet effect is a language-specific phenomenon arising early in infant speech development that is characterized by a warping of speech sound perception. An unsupervised neural network model is proposed that embodies two principal hypotheses supported by experimental data--that sensory experience guides language-specific development of an auditory neural map and that a population vector can predict psychological phenomena based on map cell activities. Model simulations show how a nonuniform distribution of map cell firing preferences can develop from language-specific input and give rise to the magnet effect.

  7. Seismic design parameters - A user guide

    USGS Publications Warehouse

    Leyendecker, E.V.; Frankel, A.D.; Rukstales, K.S.

    2001-01-01

    The 1997 NEHRP Recommended Provisions for Seismic Regulations for New Buildings (1997 NEHRP Provisions) introduced seismic design procedure that is based on the explicit use of spectral response acceleration rather than the traditional peak ground acceleration and/or peak ground velocity or zone factors. The spectral response accelerations are obtained from spectral response acceleration maps accompanying the report. Maps are available for the United States and a number of U.S. territories. Since 1997 additional codes and standards have also adopted seismic design approaches based on the same procedure used in the NEHRP Provisions and the accompanying maps. The design documents using the 1997 NEHRP Provisions procedure may be divided into three categories -(1) Design of New Construction, (2) Design and Evaluation of Existing Construction, and (3) Design of Residential Construction. A CD-ROM has been prepared for use in conjunction with the design documents in each of these three categories. The spectral accelerations obtained using the software on the CD are the same as those that would be obtained by using the maps accompanying the design documents. The software has been prepared to operate on a personal computer using a Windows (Microsoft Corporation) operating environment and a point and click type of interface. The user can obtain the spectral acceleration values that would be obtained by use of the maps accompanying the design documents, include site factors appropriate for the Site Class provided by the user, calculate a response spectrum that includes the site factor, and plot a response spectrum. Sites may be located by providing the latitude-longitude or zip code for all areas covered by the maps. All of the maps used in the various documents are also included on the CDROM

  8. Lunar terrain mapping and relative-roughness analysis

    NASA Technical Reports Server (NTRS)

    Rowan, L. C.; Mccauley, J. F.; Holm, E. A.

    1971-01-01

    Terrain maps of the equatorial zone were prepared at scales of 1:2,000,000 and 1:1,000,000 to classify lunar terrain with respect to roughness and to provide a basis for selecting sites for Surveyor and Apollo landings, as well as for Ranger and Lunar Orbiter photographs. Lunar terrain was described by qualitative and quantitative methods and divided into four fundamental classes: maria, terrae, craters, and linear features. Some 35 subdivisions were defined and mapped throughout the equatorial zone, and, in addition, most of the map units were illustrated by photographs. The terrain types were analyzed quantitatively to characterize and order their relative roughness characteristics. For some morphologically homogeneous mare areas, relative roughness can be extrapolated to the large scales from measurements at small scales.

  9. Left Ventricular Lead Placement Targeted at the Latest Activated Site Guided by Electrophysiological Mapping in Coronary Sinus Branches Improves Response to Cardiac Resynchronization Therapy.

    PubMed

    Liang, Yanchun; Yu, Haibo; Zhou, Weiwei; Xu, Guoqing; Sun, Y I; Liu, Rong; Wang, Zulu; Han, Yaling

    2015-12-01

    Electrophysiological mapping (EPM) in coronary sinus (CS) branches is feasible for guiding LV lead placement to the optimal, latest activated site at cardiac resynchronization therapy (CRT) procedures. However, whether this procedure optimizes the response to CRT has not been demonstrated. This study was to evaluate effects of targeting LV lead at the latest activated site guided by EPM during CRT. Seventy-six consecutive patients with advanced heart failure who were referred for CRT were divided into mapping (MG) and control groups (CG). In MG, the LV lead, also used as a mapping bipolar electrode, was placed at the latest activated site determined by EPM in CS branches. In CG, conventional CRT procedure was performed. Patients were followed for 6 months after CRT. Baseline characteristics were comparable between the 2 groups. In MG (n = 29), EPM was successfully performed in 85 of 91 CS branches during CRT. A LV lead was successfully placed at the latest activated site guided by EPM in 27 (93.1%) patients. Compared with CG (n = 47), MG had a significantly higher rate (86.2% vs. 63.8%, P = 0.039) of response (>15% reduction in LV end-systolic volume) to CRT, a higher percentage of patients with clinical improvement of ≥2 NYHA functional classes (72.4% vs. 44.7%, P = 0.032), and a shorter QRS duration (P = 0.004). LV lead placed at the latest activated site guided by EPM resulted in a significantly greater CRT response, and a shorter QRS duration. © 2015 Wiley Periodicals, Inc.

  10. Connected components of irreducible maps and 1D quantum phases

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Szehr, Oleg, E-mail: oleg.szehr@posteo.de; Wolf, Michael M., E-mail: wolf@ma.tum.de

    We investigate elementary topological properties of sets of completely positive (CP) maps that arise in quantum Perron-Frobenius theory. We prove that the set of primitive CP maps of fixed Kraus rank is path-connected and we provide a complete classification of the connected components of irreducible CP maps at given Kraus rank and fixed peripheral spectrum in terms of a multiplicity index. These findings are then applied to analyse 1D quantum phases by studying equivalence classes of translational invariant matrix product states that correspond to the connected components of the respective CP maps. Our results extend the previously obtained picture inmore » that they do not require blocking of physical sites, they lead to analytic paths, and they allow us to decompose into ergodic components and to study the breaking of translational symmetry.« less

  11. DNA Polymerase α Subunit Residues and Interactions Required for Efficient Initiation Complex Formation Identified by a Genetic Selection.

    PubMed

    Lindow, Janet C; Dohrmann, Paul R; McHenry, Charles S

    2015-07-03

    Biophysical and structural studies have defined many of the interactions that occur between individual components or subassemblies of the bacterial replicase, DNA polymerase III holoenzyme (Pol III HE). Here, we extended our knowledge of residues and interactions that are important for the first step of the replicase reaction: the ATP-dependent formation of an initiation complex between the Pol III HE and primed DNA. We exploited a genetic selection using a dominant negative variant of the polymerase catalytic subunit that can effectively compete with wild-type Pol III α and form initiation complexes, but cannot elongate. Suppression of the dominant negative phenotype was achieved by secondary mutations that were ineffective in initiation complex formation. The corresponding proteins were purified and characterized. One class of mutant mapped to the PHP domain of Pol III α, ablating interaction with the ϵ proofreading subunit and distorting the polymerase active site in the adjacent polymerase domain. Another class of mutation, found near the C terminus, interfered with τ binding. A third class mapped within the known β-binding domain, decreasing interaction with the β2 processivity factor. Surprisingly, mutations within the β binding domain also ablated interaction with τ, suggesting a larger τ binding site than previously recognized. © 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

  12. Historical Maps from Modern Images: Using Remote Sensing to Model and Map Century-Long Vegetation Change in a Fire-Prone Region

    PubMed Central

    Callister, Kate E.; Griffioen, Peter A.; Avitabile, Sarah C.; Haslem, Angie; Kelly, Luke T.; Kenny, Sally A.; Nimmo, Dale G.; Farnsworth, Lisa M.; Taylor, Rick S.; Watson, Simon J.; Bennett, Andrew F.; Clarke, Michael F.

    2016-01-01

    Understanding the age structure of vegetation is important for effective land management, especially in fire-prone landscapes where the effects of fire can persist for decades and centuries. In many parts of the world, such information is limited due to an inability to map disturbance histories before the availability of satellite images (~1972). Here, we describe a method for creating a spatial model of the age structure of canopy species that established pre-1972. We built predictive neural network models based on remotely sensed data and ecological field survey data. These models determined the relationship between sites of known fire age and remotely sensed data. The predictive model was applied across a 104,000 km2 study region in semi-arid Australia to create a spatial model of vegetation age structure, which is primarily the result of stand-replacing fires which occurred before 1972. An assessment of the predictive capacity of the model using independent validation data showed a significant correlation (rs = 0.64) between predicted and known age at test sites. Application of the model provides valuable insights into the distribution of vegetation age-classes and fire history in the study region. This is a relatively straightforward method which uses widely available data sources that can be applied in other regions to predict age-class distribution beyond the limits imposed by satellite imagery. PMID:27029046

  13. Testing contamination risk assessment methods for toxic elements from mine waste sites

    NASA Astrophysics Data System (ADS)

    Abdaal, A.; Jordan, G.; Szilassi, P.; Kiss, J.; Detzky, G.

    2012-04-01

    Major incidents involving mine waste facilities and poor environmental management practices have left a legacy of thousands of contaminated sites like in the historic mining areas in the Carpathian Basin. Associated environmental risks have triggered the development of new EU environmental legislation to prevent and minimize the effects of such incidents. The Mine Waste Directive requires the risk-based inventory of all mine waste sites in Europe by May 2012. In order to address the mining problems a standard risk-based Pre-selection protocol has been developed by the EU Commission. This paper discusses the heavy metal contamination in acid mine drainage (AMD) for risk assessment (RA) along the Source-Pathway-Receptor chain using decision support methods which are intended to aid national and regional organizations in the inventory and assessment of potentially contaminated mine waste sites. Several recognized methods such as the European Environmental Agency (EEA) standard PRAMS model for soil contamination, US EPA-based AIMSS and Irish HMS-IRC models for RA of abandoned sites are reviewed, compared and tested for the mining waste environment. In total 145 ore mine waste sites have been selected for scientific testing using the EU Pre-selection protocol as a case study from Hungary. The proportion of uncertain to certain responses for a site and for the total number of sites may give an insight of specific and overall uncertainty in the data we use. The Pre-selection questions are efficiently linked to a GIS system as database inquiries using digital spatial data to directly generate answers. Key parameters such as distance to the nearest surface and ground water bodies, to settlements and protected areas are calculated and statistically evaluated using STATGRAPHICS® in order to calibrate the RA models. According to our scientific research results, of the 145 sites 11 sites are the most risky having foundation slope >20o, 57 sites are within distance <500m to the nearest surface water bodies, and 33 sites are within distance <680m to the nearest settlements. Moreover 25 sites lie directly above the 'poor status' ground water bodies and 91 sites are located in the protected Natura2000 sites (distance =0). Analysis of the total score of all sites was performed, resulting in six risk classes, as follows: <21 (class I, 4 sites), 21-31 (class II, 16 sites), 31-42 (class III, 27 sites), 42-54 (class II, 38 sites), 54-66 (class V, 40 sites) and >66 (class VI, 20 sites). The total risk scores and key parameters are provided in separate tables and GIS maps, in order to facilitate interpretation and comparison. Results of the Pre-selection protocol are consistent with those of the screening PRAMS model. KEY WORDS contamination risk assessment, Mine Waste Directive, Pre-selection Protocol, PRA.MS, AIMSS, abandoned mine sites, GIS

  14. Classification of a wetland area along the upper Mississippi River with aerial videography

    USGS Publications Warehouse

    Jennings, C.A.; Vohs, P.A.; Dewey, M.R.

    1992-01-01

    We evaluated the use of aerial videography for classifying wetland habitats along the upper Mississippi River and found the prompt availability of habitat feature maps to be the major advantage of the video imagery technique. We successfully produced feature maps from digitized video images that generally agreed with the known distribution and areal coverages of the major habitat types independently identified and quantified with photointerpretation techniques. However, video images were not sufficiently detailed to allow us to consistently discriminate among the classes of aquatic macrophytes present or to quantify their areal coverage. Our inability to consistently distinguish among emergent, floating, and submergent macrophytes from the feature maps may have been related to the structural complexity of the site, to our limited vegetation sampling, and to limitations in video imagery. We expect that careful site selection (i.e., the desired level of resolution is available from video imagery) and additional vegetation samples (e.g., along a transect) will allow improved assignment of spectral values to specific plant types and enhance plant classification from feature maps produced from video imagery.

  15. Fine structure of OXI1, the mitochondrial gene coding for subunit II of yeast cytochrome c oxidase.

    PubMed

    Weiss-Brummer, B; Guba, R; Haid, A; Schweyen, R J

    1979-12-01

    Genetic and biochemical studies have been performed with 110 mutants which are defective in cytochrome a·a3 and map in the regions on mit DNA previously designated OXI1 and OXI2. With 88 mutations allocated to OXI1 fine structure mapping was achieved by the analysis of rho (-) deletions. The order of six groups of mutational sites (A 1, A2, B 1, B2, C 1, C2) thus determined was confirmed by oxi i x oxi j recombination analysis.Analysis of mitochondrially translated polypeptides of oxil mutants by SDS-polyacrylamide electrophoresis reveals three classes of mutant patterns: i) similar to wild-tpye (19 mutants); ii) lacking SU II of cytochrome c oxidase (53 mutants); iii) lacking this subunit and exhibiting a single new polypeptide of lower Mr (16 mutants). Mutations of each of these classes are scattered over the OXI1 region without any detectable clustering; this is consistent with the assumption that all oxil mutations studied are within the same gene.New polypeptides observed in oxil mutants of class iii) vary in Mr in the range from 10,500 to 33,000. Those of Mr 17,000 to 33,000 are shown to be antigenically related to subunit II of cytochrome c oxidase. Colinearity is established between the series of new polypeptides of Mr values increasing from 10,500 to 31,500 and the order of the respective mutational sites on the map, e.g. mutations mapping in A 1 generate the smallest and mutations mapping in C2 the largest mutant fragments.From these data we conclude that i) all mutations allocated to the OXI1 region are in the same gene; ii) this gene codes for subunit II of cytochrome c oxidase; iii) the direction of translation is from CAP to 0X12. Out of 19 mutants allocated to OXI2 three exhibit a new polypeptide; these and all the other oxi2 mutants lack subunit III of cytochrome oxidase. This result provides preliminary evidence that the OXI2 region harbours the structural gene for this subunit III.

  16. A heuristic multi-criteria classification approach incorporating data quality information for choropleth mapping

    PubMed Central

    Sun, Min; Wong, David; Kronenfeld, Barry

    2016-01-01

    Despite conceptual and technology advancements in cartography over the decades, choropleth map design and classification fail to address a fundamental issue: estimates that are statistically indifferent may be assigned to different classes on maps or vice versa. Recently, the class separability concept was introduced as a map classification criterion to evaluate the likelihood that estimates in two classes are statistical different. Unfortunately, choropleth maps created according to the separability criterion usually have highly unbalanced classes. To produce reasonably separable but more balanced classes, we propose a heuristic classification approach to consider not just the class separability criterion but also other classification criteria such as evenness and intra-class variability. A geovisual-analytic package was developed to support the heuristic mapping process to evaluate the trade-off between relevant criteria and to select the most preferable classification. Class break values can be adjusted to improve the performance of a classification. PMID:28286426

  17. Mapping Successional Stages in a Wet Tropical Forest Using Landsat ETM+ and Forest Inventory Data

    NASA Technical Reports Server (NTRS)

    Goncalves, Fabio G.; Yatskov, Mikhail; dos Santos, Joao Roberto; Treuhaft, Robert N.; Law, Beverly E.

    2010-01-01

    In this study, we test whether an existing classification technique based on the integration of Landsat ETM+ and forest inventory data enables detailed characterization of successional stages in a wet tropical forest site. The specific objectives were: (1) to map forest age classes across the La Selva Biological Station in Costa Rica; and (2) to quantify uncertainties in the proposed approach in relation to field data and existing vegetation maps. Although significant relationships between vegetation height entropy (a surrogate for forest age) and ETM+ data were detected, the classification scheme tested in this study was not suitable for characterizing spatial variation in age at La Selva, as evidenced by the error matrix and the low Kappa coefficient (12.9%). Factors affecting the performance of the classification at this particular study site include the smooth transition in vegetation structure between intermediate and advanced successional stages, and the low sensitivity of NDVI to variations in vertical structure at high biomass levels.

  18. Sensitivity Tests Between Vs30 and Detailed Shear Wave Profiles Using 1D and 3D Site Response Analysis, Las Vegas Valley

    NASA Astrophysics Data System (ADS)

    West, Loyd Travis

    Site characterization is an essential aspect of hazard analysis and the time-averaged shear-wave velocity to 30 m depth "Vs30" for site-class has become a critical parameter in site-specific and probabilistic hazard analysis. Yet, the general applicability of Vs30 can be ambiguous and much debate and research surround its application. In 2007, in part to mitigate the uncertainty associated with the use of Vs30 in Las Vegas Valley, the Clark County Building Department (CCBD) in collaboration with the Nevada System of Higher Education (NSHE) embarked on an endeavor to map Vs30 using a geophysical methods approach for a site-class microzonation map of over 500 square miles (1500 km2) in southern Nevada. The resulting dataset, described by Pancha et al. (2017), contains over 10,700 1D shear-wave-velocity-depth profiles (SWVP) that constitute a rich database of 3D shear-wave velocity structure that is both laterally and vertical heterogenous. This study capitalizes on the uniquely detailed and spatially dense CCBD database to carry out sensitivity tests on the detailed shear-wave-velocity-profiles and the Vs30 utilizing 1D and 3D site-response approaches. Sensitivity tests are derived from the 1D oscillator response of a single-degree-of-freedom-oscillator and from 3D finite-difference deterministic simulations up to 15 Hz frequency using similar model parameters. Results demonstrate that the detailed SWVP are amplifying ground motions by roughly 50% over the simple Vs30 models, above 4.6 Hz frequency. Numerical simulations also depict significant lateral resonance, focusing, and scattering from seismic energy attributed to the 3D small-scale heterogeneities of the shear-wave-velocity profiles that result in a 70% increase in peak ground velocity. Additionally, PGV ratio maps clearly establish that the increased amplification from the detailed SWVPs is consistent throughout the model space. As a corollary, this study demonstrates the use of finite-differencing numerical based methods to simulate ground motions at high frequencies, up to 15 Hz.

  19. Vegetation classification and distribution mapping report Mesa Verde National Park

    USGS Publications Warehouse

    Thomas, Kathryn A.; McTeague, Monica L.; Ogden, Lindsay; Floyd, M. Lisa; Schulz, Keith; Friesen, Beverly A.; Fancher, Tammy; Waltermire, Robert G.; Cully, Anne

    2009-01-01

    The classification and distribution mapping of the vegetation of Mesa Verde National Park (MEVE) and surrounding environment was achieved through a multi-agency effort between 2004 and 2007. The National Park Service’s Southern Colorado Plateau Network facilitated the team that conducted the work, which comprised the U.S. Geological Survey’s Southwest Biological Science Center, Fort Collins Research Center, and Rocky Mountain Geographic Science Center; Northern Arizona University; Prescott College; and NatureServe. The project team described 47 plant communities for MEVE, 34 of which were described from quantitative classification based on f eld-relevé data collected in 1993 and 2004. The team derived 13 additional plant communities from field observations during the photointerpretation phase of the project. The National Vegetation Classification Standard served as a framework for classifying these plant communities to the alliance and association level. Eleven of the 47 plant communities were classified as “park specials;” that is, plant communities with insufficient data to describe them as new alliances or associations. The project team also developed a spatial vegetation map database representing MEVE, with three different map-class schemas: base, group, and management map classes. The base map classes represent the fi nest level of spatial detail. Initial polygons were developed using Definiens Professional (at the time of our use, this software was called eCognition), assisted by interpretation of 1:12,000 true-color digital orthophoto quarter quadrangles (DOQQs). These polygons (base map classes) were labeled using manual photo interpretation of the DOQQs and 1:12,000 true-color aerial photography. Field visits verified interpretation concepts. The vegetation map database includes 46 base map classes, which consist of associations, alliances, and park specials classified with quantitative analysis, additional associations and park specials noted during photointerpretation, and non-vegetated land cover, such as infrastructure, land use, and geological land cover. The base map classes consist of 5,007 polygons in the project area. A field-based accuracy assessment of the base map classes showed overall accuracy to be 43.5%. Seven map classes comprise 89.1% of the park vegetated land cover. The group map classes represent aggregations of the base map classes, approximating the group level of the National Vegetation Classification Standard, version 2 (Federal Geographic Data Committee 2007), and reflecting physiognomy and floristics. Terrestrial ecological systems, as described by NatureServe (Comer et al. 2003), were used as the fi rst approximation of the group level. The project team identified 14 group map classes for this project. The overall accuracy of the group map classes was determined using the same accuracy assessment data as for the base map classes. The overall accuracy of the group representation of vegetation was 80.3%. In consultation with park staff , the team developed management map classes, consisting of park-defined groupings of base map classes intended to represent a balance between maintaining required accuracy and providing a focus on vegetation of particular interest or import to park managers. The 23 management map classes had an overall accuracy of 73.3%. While the main products of this project are the vegetation classification and the vegetation map database, a number of ancillary digital geographic information system and database products were also produced that can be used independently or to augment the main products. These products include shapefiles of the locations of field-collected data and relational databases of field-collected data.

  20. Will it Blend? Visualization and Accuracy Evaluation of High-Resolution Fuzzy Vegetation Maps

    NASA Astrophysics Data System (ADS)

    Zlinszky, A.; Kania, A.

    2016-06-01

    Instead of assigning every map pixel to a single class, fuzzy classification includes information on the class assigned to each pixel but also the certainty of this class and the alternative possible classes based on fuzzy set theory. The advantages of fuzzy classification for vegetation mapping are well recognized, but the accuracy and uncertainty of fuzzy maps cannot be directly quantified with indices developed for hard-boundary categorizations. The rich information in such a map is impossible to convey with a single map product or accuracy figure. Here we introduce a suite of evaluation indices and visualization products for fuzzy maps generated with ensemble classifiers. We also propose a way of evaluating classwise prediction certainty with "dominance profiles" visualizing the number of pixels in bins according to the probability of the dominant class, also showing the probability of all the other classes. Together, these data products allow a quantitative understanding of the rich information in a fuzzy raster map both for individual classes and in terms of variability in space, and also establish the connection between spatially explicit class certainty and traditional accuracy metrics. These map products are directly comparable to widely used hard boundary evaluation procedures, support active learning-based iterative classification and can be applied for operational use.

  1. Inventory of forest and rangeland and detection of forest stress

    NASA Technical Reports Server (NTRS)

    Heller, R. C.; Aldrich, R. C.; Weber, F. P.; Driscoll, R. S. (Principal Investigator)

    1972-01-01

    There are no author-identified significant results in this report. Some ERTS-1 imagery has been received for each of the test sites: Black Hills, Atlanta, and Manitou. Only small portions of each site are covered and clouds have precluded capturing good imagery over the center of each site. Discoloration infestations of ponderosa pine are being located and sized on CIR transparencies. A computer program was completed from microdensitometer scans of CIR photos which maps areas of an image which are spectrally similar. Decided differences between forest types are present as well as differences between forest and other vegetative and nonvegetative land classes.

  2. Development and application of operational techniques for the inventory and monitoring of resources and uses for the Texas coastal zone

    NASA Technical Reports Server (NTRS)

    Harwood, P. (Principal Investigator); Finley, R.; Mcculloch, S.; Marphy, D.; Hupp, B.

    1976-01-01

    The author has identified the following significant results. Image interpretation mapping techniques were successfully applied to test site 5, an area with a semi-arid climate. The land cover/land use classification required further modification. A new program, HGROUP, added to the ADP classification schedule provides a convenient method for examining the spectral similarity between classes. This capability greatly simplifies the task of combining 25-30 unsupervised subclasses into about 15 major classes that approximately correspond to the land use/land cover classification scheme.

  3. New Explorer-class AUV Ready for Deep-water, High-resolution Habitat Mapping Studies

    NASA Astrophysics Data System (ADS)

    Potts, T. A.; Shepard, A.

    2006-12-01

    In 2002, a partnership was formed to design, construct, field test, and operate an Autonomous Underwater Vehicle (AUV) equipped to provide high-resolution (<1 m) maps of offshore seafloor habitats down to 2200 meters depth. An ISE Explorer-class AUV was constructed and equipped to conduct seafloor characterization via multi-beam EM2000 providing both bathymetry and backscatter. Three 10-day cruises will be conducted between August and November 2006 to put the vehicle through its paces and refine operating protocols. It is anticipated that the vehicle will log over 200 hours of bottom time and acquire over 30 GB of data at proposed marine protected area sites off North and South Carolina, Gray's Reef National Marine Sanctuary off Georgia, and at the Oculina Habitat Area of Particular Concern off the east coast of Florida. The AUV will begin supporting competitively reviewed science projects starting in 2007.

  4. Implications of next generation attenuation ground motion prediction equations for site coefficients used in earthquake resistant design

    USGS Publications Warehouse

    Borcherdt, Roger D.

    2014-01-01

    Proposals are developed to update Tables 11.4-1 and 11.4-2 of Minimum Design Loads for Buildings and Other Structures published as American Society of Civil Engineers Structural Engineering Institute standard 7-10 (ASCE/SEI 7–10). The updates are mean next generation attenuation (NGA) site coefficients inferred directly from the four NGA ground motion prediction equations used to derive the maximum considered earthquake response maps adopted in ASCE/SEI 7–10. Proposals include the recommendation to use straight-line interpolation to infer site coefficients at intermediate values of (average shear velocity to 30-m depth). The NGA coefficients are shown to agree well with adopted site coefficients at low levels of input motion (0.1 g) and those observed from the Loma Prieta earthquake. For higher levels of input motion, the majority of the adopted values are within the 95% epistemic-uncertainty limits implied by the NGA estimates with the exceptions being the mid-period site coefficient, Fv, for site class D and the short-period coefficient, Fa, for site class C, both of which are slightly less than the corresponding 95% limit. The NGA data base shows that the median value  of 913 m/s for site class B is more typical than 760 m/s as a value to characterize firm to hard rock sites as the uniform ground condition for future maximum considered earthquake response ground motion estimates. Future updates of NGA ground motion prediction equations can be incorporated easily into future adjustments of adopted site coefficients using procedures presented herein. 

  5. A geomorphic approach to 100-year floodplain mapping for the Conterminous United States

    NASA Astrophysics Data System (ADS)

    Jafarzadegan, Keighobad; Merwade, Venkatesh; Saksena, Siddharth

    2018-06-01

    Floodplain mapping using hydrodynamic models is difficult in data scarce regions. Additionally, using hydrodynamic models to map floodplain over large stream network can be computationally challenging. Some of these limitations of floodplain mapping using hydrodynamic modeling can be overcome by developing computationally efficient statistical methods to identify floodplains in large and ungauged watersheds using publicly available data. This paper proposes a geomorphic model to generate probabilistic 100-year floodplain maps for the Conterminous United States (CONUS). The proposed model first categorizes the watersheds in the CONUS into three classes based on the height of the water surface corresponding to the 100-year flood from the streambed. Next, the probability that any watershed in the CONUS belongs to one of these three classes is computed through supervised classification using watershed characteristics related to topography, hydrography, land use and climate. The result of this classification is then fed into a probabilistic threshold binary classifier (PTBC) to generate the probabilistic 100-year floodplain maps. The supervised classification algorithm is trained by using the 100-year Flood Insurance Rated Maps (FIRM) from the U.S. Federal Emergency Management Agency (FEMA). FEMA FIRMs are also used to validate the performance of the proposed model in areas not included in the training. Additionally, HEC-RAS model generated flood inundation extents are used to validate the model performance at fifteen sites that lack FEMA maps. Validation results show that the probabilistic 100-year floodplain maps, generated by proposed model, match well with both FEMA and HEC-RAS generated maps. On average, the error of predicted flood extents is around 14% across the CONUS. The high accuracy of the validation results shows the reliability of the geomorphic model as an alternative approach for fast and cost effective delineation of 100-year floodplains for the CONUS.

  6. Maize Cropping Systems Mapping Using RapidEye Observations in Agro-Ecological Landscapes in Kenya.

    PubMed

    Richard, Kyalo; Abdel-Rahman, Elfatih M; Subramanian, Sevgan; Nyasani, Johnson O; Thiel, Michael; Jozani, Hosein; Borgemeister, Christian; Landmann, Tobias

    2017-11-03

    Cropping systems information on explicit scales is an important but rarely available variable in many crops modeling routines and of utmost importance for understanding pests and disease propagation mechanisms in agro-ecological landscapes. In this study, high spatial and temporal resolution RapidEye bio-temporal data were utilized within a novel 2-step hierarchical random forest (RF) classification approach to map areas of mono- and mixed maize cropping systems. A small-scale maize farming site in Machakos County, Kenya was used as a study site. Within the study site, field data was collected during the satellite acquisition period on general land use/land cover (LULC) and the two cropping systems. Firstly, non-cropland areas were masked out from other land use/land cover using the LULC mapping result. Subsequently an optimized RF model was applied to the cropland layer to map the two cropping systems (2nd classification step). An overall accuracy of 93% was attained for the LULC classification, while the class accuracies (PA: producer's accuracy and UA: user's accuracy) for the two cropping systems were consistently above 85%. We concluded that explicit mapping of different cropping systems is feasible in complex and highly fragmented agro-ecological landscapes if high resolution and multi-temporal satellite data such as 5 m RapidEye data is employed. Further research is needed on the feasibility of using freely available 10-20 m Sentinel-2 data for wide-area assessment of cropping systems as an important variable in numerous crop productivity models.

  7. The Application of Ligand-Mapping Molecular Dynamics Simulations to the Rational Design of Peptidic Modulators of Protein-Protein Interactions.

    PubMed

    Tan, Yaw Sing; Spring, David R; Abell, Chris; Verma, Chandra S

    2015-07-14

    A computational ligand-mapping approach to detect protein surface pockets that interact with hydrophobic moieties is presented. In this method, we incorporated benzene molecules into explicit solvent molecular dynamics simulations of various protein targets. The benzene molecules successfully identified the binding locations of hydrophobic hot-spot residues and all-hydrocarbon cross-links from known peptidic ligands. They also unveiled cryptic binding sites that are occluded by side chains and the protein backbone. Our results demonstrate that ligand-mapping molecular dynamics simulations hold immense promise to guide the rational design of peptidic modulators of protein-protein interactions, including that of stapled peptides, which show promise as an exciting new class of cell-penetrating therapeutic molecules.

  8. Environmental Assessment for the Construction of a Shoppette, Class Six Store, and Car-Care Facilities at Dover Air Force Base, Kent County, Delaware

    DTIC Science & Technology

    2007-12-01

    Ecology and Environment, Inc.FILE: \\\\Talbdl1\\gis\\DoverEA\\MAPS\\MXD\\FIG-1_DoverAFB_RegionalLocationMap.mxd DATE: August 03...7󈧢 "N 39° 7󈧢 "N © 2007 Ecology and Environment, Inc.FILE: \\\\Talbdl1\\GIS\\DoverEA\\MAPS\\MXD\\FIG-2_DoverAFB_ExistingProposed_SitePlans.mxd...34W 75°29𔃺"W 39° 8𔃺" N 39° 8𔃺" N 39° 7𔃺" N 39° 7𔃺" N 39° 6𔃺" N 39° 6𔃺" N © 2007 Ecology and Environment,

  9. Seismic zonation of Port-Au-Prince using pixel- and object-based imaging analysis methods on ASTER GDEM

    USGS Publications Warehouse

    Yong, Alan; Hough, Susan E.; Cox, Brady R.; Rathje, Ellen M.; Bachhuber, Jeff; Dulberg, Ranon; Hulslander, David; Christiansen, Lisa; and Abrams, Michael J.

    2011-01-01

    We report about a preliminary study to evaluate the use of semi-automated imaging analysis of remotely-sensed DEM and field geophysical measurements to develop a seismic-zonation map of Port-au-Prince, Haiti. For in situ data, VS30 values are derived from the MASW technique deployed in and around the city. For satellite imagery, we use an ASTER GDEM of Hispaniola. We apply both pixel- and object-based imaging methods on the ASTER GDEM to explore local topography (absolute elevation values) and classify terrain types such as mountains, alluvial fans and basins/near-shore regions. We assign NEHRP seismic site class ranges based on available VS30 values. A comparison of results from imagery-based methods to results from traditional geologic-based approaches reveals good overall correspondence. We conclude that image analysis of RS data provides reliable first-order site characterization results in the absence of local data and can be useful to refine detailed site maps with sparse local data.

  10. Moraxella catarrhalis synthesizes an autotransporter that is an acid phosphatase.

    PubMed

    Hoopman, Todd C; Wang, Wei; Brautigam, Chad A; Sedillo, Jennifer L; Reilly, Thomas J; Hansen, Eric J

    2008-02-01

    Moraxella catarrhalis O35E was shown to synthesize a 105-kDa protein that has similarity to both acid phosphatases and autotransporters. The N-terminal portion of the M. catarrhalis acid phosphatase A (MapA) was most similar (the BLAST probability score was 10(-10)) to bacterial class A nonspecific acid phosphatases. The central region of the MapA protein had similarity to passenger domains of other autotransporter proteins, whereas the C-terminal portion of MapA resembled the translocation domain of conventional autotransporters. Cloning and expression of the M. catarrhalis mapA gene in Escherichia coli confirmed the presence of acid phosphatase activity in the MapA protein. The MapA protein was shown to be localized to the outer membrane of M. catarrhalis and was not detected either in the soluble cytoplasmic fraction from disrupted M. catarrhalis cells or in the spent culture supernatant fluid from M. catarrhalis. Use of the predicted MapA translocation domain in a fusion construct with the passenger domain from another predicted M. catarrhalis autotransporter confirmed the translocation ability of this MapA domain. Inactivation of the mapA gene in M. catarrhalis strain O35E reduced the acid phosphatase activity expressed by this organism, and this mutation could be complemented in trans with the wild-type mapA gene. Nucleotide sequence analysis of the mapA gene from six M. catarrhalis strains showed that this protein was highly conserved among strains of this pathogen. Site-directed mutagenesis of a critical histidine residue (H233A) in the predicted active site of the acid phosphatase domain in MapA eliminated acid phosphatase activity in the recombinant MapA protein. This is the first description of an autotransporter protein that expresses acid phosphatase activity.

  11. Moraxella catarrhalis Synthesizes an Autotransporter That Is an Acid Phosphatase▿

    PubMed Central

    Hoopman, Todd C.; Wang, Wei; Brautigam, Chad A.; Sedillo, Jennifer L.; Reilly, Thomas J.; Hansen, Eric J.

    2008-01-01

    Moraxella catarrhalis O35E was shown to synthesize a 105-kDa protein that has similarity to both acid phosphatases and autotransporters. The N-terminal portion of the M. catarrhalis acid phosphatase A (MapA) was most similar (the BLAST probability score was 10−10) to bacterial class A nonspecific acid phosphatases. The central region of the MapA protein had similarity to passenger domains of other autotransporter proteins, whereas the C-terminal portion of MapA resembled the translocation domain of conventional autotransporters. Cloning and expression of the M. catarrhalis mapA gene in Escherichia coli confirmed the presence of acid phosphatase activity in the MapA protein. The MapA protein was shown to be localized to the outer membrane of M. catarrhalis and was not detected either in the soluble cytoplasmic fraction from disrupted M. catarrhalis cells or in the spent culture supernatant fluid from M. catarrhalis. Use of the predicted MapA translocation domain in a fusion construct with the passenger domain from another predicted M. catarrhalis autotransporter confirmed the translocation ability of this MapA domain. Inactivation of the mapA gene in M. catarrhalis strain O35E reduced the acid phosphatase activity expressed by this organism, and this mutation could be complemented in trans with the wild-type mapA gene. Nucleotide sequence analysis of the mapA gene from six M. catarrhalis strains showed that this protein was highly conserved among strains of this pathogen. Site-directed mutagenesis of a critical histidine residue (H233A) in the predicted active site of the acid phosphatase domain in MapA eliminated acid phosphatase activity in the recombinant MapA protein. This is the first description of an autotransporter protein that expresses acid phosphatase activity. PMID:18065547

  12. An evaluation of time-series MODIS 250-meter vegetation index data for crop mapping in the United States Central Great Plains

    NASA Astrophysics Data System (ADS)

    Wardlow, Brian Douglas

    The objectives of this research were to: (1) investigate time-series MODIS (Moderate Resolution Imaging Spectroradiometer) 250-meter EVI (Enhanced Vegetation Index) and NDVI (Normalized Difference Vegetation Index) data for regional-scale crop-related land use/land cover characterization in the U.S. Central Great Plains and (2) develop and test a MODIS-based crop mapping protocol. A pixel-level analysis of the time-series MODIS 250-m VIs for 2,000+ field sites across Kansas found that unique spectral-temporal signatures were detected for the region's major crop types, consistent with the crops' phenology. Intra-class variations were detected in VI data associated with different land use practices, climatic conditions, and planting dates for the crops. The VIs depicted similar seasonal variations and were highly correlated. A pilot study in southwest Kansas found that accurate and detailed cropping patterns could be mapped using the MODIS 250-m VI data. Overall and class-specific accuracies were generally greater than 90% for mapping crop/non-crop, general crops (alfalfa, summer crops, winter wheat, and fallow), summer crops (corn, sorghum, and soybeans), and irrigated/non-irrigated crops using either VI dataset. The classified crop areas also had a high level of agreement (<5% difference) with the USDA reported crop areas. Both VIs produced comparable crop maps with only a 1-2% difference between their classification accuracies and a high level of pixel-level agreement (>90%) between their classified crop patterns. This hierarchical crop mapping protocol was tested for Kansas and produced similar classification results over a larger and more diverse area. Overall and class-specific accuracies were typically between 85% and 95% for the crop maps. At the state level, the maps had a high level of areal agreement (<5% difference) with the USDA crop area figures and their classified patterns were consistent with the state's cropping practices. In general, the protocol's performance was relatively consistent across the state's range of environmental conditions, landscape patterns, and cropping practices. The largest areal differences occurred in eastern Kansas due to the omission of many small cropland areas that were not resolvable at MODIS' 250-m resolution. Notable regional deviations in classified areas also occurred for selected classes due to localized precipitation patterns and specific cropping practices.

  13. Quantification of soil mapping by digital analysis of LANDSAT data. [Clinton County, Indiana

    NASA Technical Reports Server (NTRS)

    Kirschner, F. R.; Kaminsky, S. A.; Hinzel, E. J.; Sinclair, H. R.; Weismiller, R. A.

    1977-01-01

    Soil survey mapping units are designed such that the dominant soil represents the major proportion of the unit. At times, soil mapping delineations do not adequately represent conditions as stated in the mapping unit descriptions. Digital analysis of LANDSAT multispectral scanner (MSS) data provides a means of accurately describing and quantifying soil mapping unit composition. Digital analysis of LANDSAT MSS data collected on 9 June 1973 was used to prepare a spectral soil map for a 430-hectare area in Clinton County, Indiana. Fifteen spectral classes were defined, representing 12 soil and 3 vegetation classes. The 12 soil classes were grouped into 4 moisture regimes based upon their spectral responses; the 3 vegetation classes were grouped into one all-inclusive class.

  14. Quantification of map similarity to magnetic pre-screening for heavy metal pollution assessment in top soil

    NASA Astrophysics Data System (ADS)

    Cao, L.; Appel, E.; Roesler, W.; Ojha, G.

    2013-12-01

    From numerous published results, the link between magnetic concentration and heavy metal (HM) concentrations is well established. However, bivariate correlation analysis does not imply causality, and if there are extreme values, which often appear in magnetic data, they can lead to seemingly excellent correlation. It seems clear that site selection for chemical sampling based on magnetic pre-screening can deliver a superior result for outlining HM pollution, but this conclusion has only been drawn from qualitative evaluation so far. In this study, we use map similarity comparison techniques to demonstrate the usefulness of a combined magnetic-chemical approach quantitatively. We chose available data around the 'Schwarze Pumpe', a large coal burning power plant complex located in eastern Germany. The site of 'Schwarze Pumpe' is suitable for a demonstration study as soil in its surrounding is heavy fly-ash polluted, the magnetic natural background is very low, and magnetic investigations can be done in undisturbed forest soil. Magnetic susceptibility (MS) of top soil was measured by a Bartington MS2D surface sensor at 180 locations and by a SM400 downhole device in ~0.5m deep vertical sections at 90 locations. Cores from the 90 downhole sites were also studied for HM analysis. From these results 85 sites could be used to determine a spatial distribution map of HM contents reflecting the 'True' situation of pollution. Different sets comprising 30 sites were chosen by arbitrarily selection from the above 85 sample sites (we refer to four such maps here: S1-4). Additionally, we determined a 'Targeted' map from 30 sites selected on the basis of the pre-screening MS results. The map comparison process is as follows: (1) categorization of all absolute values into five classes by the Natural Breaks classification method; (2) use Delaunay triangulation for connecting the sample locations in the x-y plane; (3) determination of a distribution map of triangular planes with classified values as the Z coordinate; (4) calculation of normal vectors for each individual triangular plane; (5)transformation to the TINs into raster data assigning the same normal vectors to all grid-points which are inside the same TIN; (6) calculation of the root-mean-square of angles between normal vectors of two maps at the same grid points. Additionally, we applied the kappa statistics method to assess map similarities, and moreover developed a Fuzzy set approach. Combining both methods using indices of Khisto, Klocation, Kappa, Kfuzzy obtains a broad comparison system, which allows determining the degree of similarity and also the spatial distribution of similarity between two maps. The results indicate that the similarity between the 'Targeted' and 'True' distribution map is higher than that between 'S1-4' and the 'True' map. It manifests that magnetic pre-screening can provide a reliable basis for targeted selection of chemical sampling sites demonstrating the superior efficiency of a combined magnetic-chemical site assessment in comparison to a traditional chemical-only approach.

  15. Memory matters: influence from a cognitive map on animal space use.

    PubMed

    Gautestad, Arild O

    2011-10-21

    A vertebrate individual's cognitive map provides a capacity for site fidelity and long-distance returns to favorable patches. Fractal-geometrical analysis of individual space use based on collection of telemetry fixes makes it possible to verify the influence of a cognitive map on the spatial scatter of habitat use and also to what extent space use has been of a scale-specific versus a scale-free kind. This approach rests on a statistical mechanical level of system abstraction, where micro-scale details of behavioral interactions are coarse-grained to macro-scale observables like the fractal dimension of space use. In this manner, the magnitude of the fractal dimension becomes a proxy variable for distinguishing between main classes of habitat exploration and site fidelity, like memory-less (Markovian) Brownian motion and Levy walk and memory-enhanced space use like Multi-scaled Random Walk (MRW). In this paper previous analyses are extended by exploring MRW simulations under three scenarios: (1) central place foraging, (2) behavioral adaptation to resource depletion (avoidance of latest visited locations) and (3) transition from MRW towards Levy walk by narrowing memory capacity to a trailing time window. A generalized statistical-mechanical theory with the power to model cognitive map influence on individual space use will be important for statistical analyses of animal habitat preferences and the mechanics behind site fidelity and home ranges. Copyright © 2011 Elsevier Ltd. All rights reserved.

  16. Mediterranean Land Use and Land Cover Classification Assessment Using High Spatial Resolution Data

    NASA Astrophysics Data System (ADS)

    Elhag, Mohamed; Boteva, Silvena

    2016-10-01

    Landscape fragmentation is noticeably practiced in Mediterranean regions and imposes substantial complications in several satellite image classification methods. To some extent, high spatial resolution data were able to overcome such complications. For better classification performances in Land Use Land Cover (LULC) mapping, the current research adopts different classification methods comparison for LULC mapping using Sentinel-2 satellite as a source of high spatial resolution. Both of pixel-based and an object-based classification algorithms were assessed; the pixel-based approach employs Maximum Likelihood (ML), Artificial Neural Network (ANN) algorithms, Support Vector Machine (SVM), and, the object-based classification uses the Nearest Neighbour (NN) classifier. Stratified Masking Process (SMP) that integrates a ranking process within the classes based on spectral fluctuation of the sum of the training and testing sites was implemented. An analysis of the overall and individual accuracy of the classification results of all four methods reveals that the SVM classifier was the most efficient overall by distinguishing most of the classes with the highest accuracy. NN succeeded to deal with artificial surface classes in general while agriculture area classes, and forest and semi-natural area classes were segregated successfully with SVM. Furthermore, a comparative analysis indicates that the conventional classification method yielded better accuracy results than the SMP method overall with both classifiers used, ML and SVM.

  17. Aggregation of Sentinel-2 time series classifications as a solution for multitemporal analysis

    NASA Astrophysics Data System (ADS)

    Lewiński, Stanislaw; Nowakowski, Artur; Malinowski, Radek; Rybicki, Marcin; Kukawska, Ewa; Krupiński, Michał

    2017-10-01

    The general aim of this work was to elaborate efficient and reliable aggregation method that could be used for creating a land cover map at a global scale from multitemporal satellite imagery. The study described in this paper presents methods for combining results of land cover/land use classifications performed on single-date Sentinel-2 images acquired at different time periods. For that purpose different aggregation methods were proposed and tested on study sites spread on different continents. The initial classifications were performed with Random Forest classifier on individual Sentinel-2 images from a time series. In the following step the resulting land cover maps were aggregated pixel by pixel using three different combinations of information on the number of occurrences of a certain land cover class within a time series and the posterior probability of particular classes resulting from the Random Forest classification. From the proposed methods two are shown superior and in most cases were able to reach or outperform the accuracy of the best individual classifications of single-date images. Moreover, the aggregations results are very stable when used on data with varying cloudiness. They also enable to reduce considerably the number of cloudy pixels in the resulting land cover map what is significant advantage for mapping areas with frequent cloud coverage.

  18. Moss and lichen cover mapping at local and regional scales in the boreal forest ecosystem of central Canada

    USGS Publications Warehouse

    Rapalee, G.; Steyaert, L.T.; Hall, F.G.

    2001-01-01

    Mosses and lichens are important components of boreal landscapes [Vitt et al., 1994; Bubier et al., 1997]. They affect plant productivity and belowground carbon sequestration and alter the surface runoff and energy balance. We report the use of multiresolution satellite data to map moss and lichens over the BOREAS region at a 10 m, 30 m, and 1 km scales. Our moss and lichen classification at the 10 m scale is based on ground observations of associations among soil drainage classes, overstory composition, and cover type among four broad classes of ground cover (feather, sphagnum, and brown mosses and lichens). For our 30 m map, we used field observations of ground cover-overstory associations to map mosses and lichens in the BOREAS southern study area (SSA). To scale up to a 1 km (AVHRR) moss map of the BOREAS region, we used the TM SSA mosaics plus regional field data to identify AVHRR overstory-ground cover associations. We found that: 1) ground cover, overstory composition and density are highly correlated, permitting inference of moss and lichen cover from satellite-based land cover classifications; 2) our 1 km moss map reveals that mosses dominate the boreal landscape of central Canada, thereby a significant factor for water, energy, and carbon modeling; 3) TM and AVHRR moss cover maps are comparable; 4) satellite data resolution is important; particularly in detecting the smaller wetland features, lakes, and upland jack pine sites; and 5) distinct regional patterns of moss and lichen cover correspond to latitudinal and elevational gradients. Copyright 2001 by the American Geophysical Union.

  19. Use of slope, aspect, and elevation maps derived from digital elevation model data in making soil surveys

    USGS Publications Warehouse

    Klingebiel, A.A.; Horvath, E.H.; Moore, D.G.; Reybold, W.U.

    1987-01-01

    Maps showing different classes of slope, aspect, and elevation were developed from U.S. Geological Survey digital elevation model data. The classes were displayed on clear Mylar at 1:24 000-scale and registered with topographic maps and orthophotos. The maps were used with aerial photographs, topographic maps, and other resource data to determine their value in making order-three soil surveys. They were tested on over 600 000 ha in Wyoming, Idaho, and Nevada under various climatic and topographic conditions. Field evaluations showed that the maps developed from digital elevation model data were accurate, except for slope class maps where slopes were <4%. The maps were useful to soil scientists, especially where (i) class boundaries coincided with soil changes, landform delineations, land use and management separations, and vegetation changes, and (ii) rough terrain and dense vegetation made it difficult to traverse the area. In hot, arid areas of sparse vegetation, the relationship of slope classes to kinds of soil and vegetation was less significant.

  20. Landfill site selection for municipal solid wastes in mountainous areas with landslide susceptibility.

    PubMed

    Eskandari, Mahnaz; Homaee, Mehdi; Falamaki, Amin

    2016-06-01

    Several cities across the world are located in mountainous and landslide prone areas. Any landfill siting without considering landslide susceptibility in such regions may impose additional environmental adversity. This study was aimed to propose a practical method for selecting waste disposal site that accounts for landslide exposure. The proposed method was applied to a city which is highly proneness to landslide due to its geology, morphology, and climatic conditions. First, information on the previously occurred landslides of the region was collected. Based on this information, proper landslide causative factors were selected and their thematic maps were prepared. Factors' classes were then standardized in 0-1 domain, and thematic layers were weighted by using analytical hierarchy process (AHP). The landslide susceptibility map was prepared afterwards. Unsuitable areas for landfill location were masked in GIS environment by Boolean method, retaining sufficient areas for further evaluation. Nine remaining alternatives were selected through comprehensive field visits and were ranked by using AHP. Consequently, 17 factors in three environmental, economical, and social perspectives were employed. Sensitivity analyses were performed to assess the stability of the alternatives ranking with respect to variations in criterion weights. Based on the obtained landslide susceptible map, nearly 36 % of the entire region is proneness to landslide. The prepared Boolean map indicates that potential areas for landfill construction cover 11 % of the whole region. The results further indicated that if landslide susceptible areas are not considered in landfill site selection, the potential landfill sites would become more than twice. It can be concluded that if any of these landslide prone sites are selected for landfilling, further environmental disaster would be terminated in the future. It can be further concluded that the proposed method could reasonably well be adjusted to consider landslide exposure when siting a solid waste landfill.

  1. LANDSAT landcover information applied to regional planning decisions. [Prince Edward County, Virginia

    NASA Technical Reports Server (NTRS)

    Dixon, C. M.

    1981-01-01

    Land cover information derived from LANDSAT is being utilized by Piedmont Planning District Commission located in the State of Virginia. Progress to date is reported on a level one land cover classification map being produced with nine categories. The nine categories of classification are defined. The computer compatible tape selection is presented. Two unsupervised classifications were done, with 50 and 70 classes respectively. Twenty-eight spectral classes were developed using the supervised technique, employing actual ground truth training sites. The accuracy of the unsupervised classifications are estimated through comparison with local county statistics and with an actual pixel count of LANDSAT information compared to ground truth.

  2. Evaluation of ERTS-1 imagery in mapping and managing soil and range resources in the Sand Hills region of Nebraska

    NASA Technical Reports Server (NTRS)

    Drew, J. V. (Principal Investigator); Seevers, P. M.

    1974-01-01

    The author has identified the following significant results. Interpretations of imagery from the Earth Resources Technology Satellite (ERTS-1) indicate that soil associations and attendant range sites can be identified on the basis of vegetation and topography using multitemporal imagery. Optical density measurements of imagery from the visible red band of the multispectral scanner(MSS band 5) obtained during the growing season were related to field measurements of vegetative biomass, a factor that closely parallels range condition class on specific range sites. ERTS-1 imagery also permitted inventory and assessment of center-pivot irrigation systems in the Sand Hills region in relation to soil and topographic conditions and energy requirements. Four resource maps of the Upper Loup Natural Resource District located entirely within the Sand Hills region were prepared from ERTS-1 imagery.

  3. Use of LANDSAT for land use and habitat inventories for the New Jersey Pinelands

    NASA Technical Reports Server (NTRS)

    Tracy, C.

    1981-01-01

    The New Jersey Heritage program surveyed available mapping information on landcover and vegetative communities and found that most commonly used sources, such as local land use maps and aerial photographs, were useful for individual sites, but either varied in their classifications or could not be used over extensive areas. A demonstration project using LANDSAT satellite information for the Great Egg Harbor/Tuckahoe watersheds was initiated with the goals of application (providing an inventory of vegetative communities and land use) flexibility (providing a method of collecting data which can be updated or modified in the future); and efficiency (allowing for an acceptable cost level by having staff undertake the project and avoid the more costly methods from air photo interpretation or on-site surveying. The classification procedure used is described and the spatial distributions of the 10 landcover classes determined are listed.

  4. Discussion map and cooking classes: testing the effectiveness of teaching food safety to immigrants and refugees.

    PubMed

    Gold, Abby; Yu, Nan; Buro, Brandy; Garden-Robinson, Julie

    2014-01-01

    To evaluate the effectiveness of a food safety map as an educational method with English language learners. English language learner community members (n = 73) were assigned randomly to participate in 1 of 3 experimental conditions: food safety map, cooking class, and control. Participants in the food safety map and cooking class conditions completed a pre-education demographic and cooking history questionnaire, a post-education knowledge and intention questionnaire, and a 2-week post-cooking and food safety habits assessment. Participants in the control group received no educational training but completed the pre- and 2-week post-education assessments. The cooking class and the map class were both effective in increasing food safety knowledge. Specifically, by comparing with the control group, they significantly increased participants' knowledge of safely cooking large meat (χ² [df = 2, n = 66] = 40.87; P < .001; V* = .79) and correctly refrigerating cooked food (χ² [df = 2, n = 73] = 24.87, P < .001; V* = .58). The two class types generated similar positive educational effects on boosting food safety behavioral intention (measured right after the class). The data collected 2 weeks after the classes suggested that individuals who took the classes followed the suggested food behaviors more closely than those in the control group (P < .01). The food safety map is simple to use and prepare, beneficial for oral and visual learners, and inexpensive. Compared with a food safety cooking class, the map produces similar learning and behavioral outcomes. Copyright © 2014 Society for Nutrition Education and Behavior. Published by Elsevier Inc. All rights reserved.

  5. A comparison of the accuracy of pixel based and object based classifications of integrated optical and LiDAR data

    NASA Astrophysics Data System (ADS)

    Gajda, Agnieszka; Wójtowicz-Nowakowska, Anna

    2013-04-01

    A comparison of the accuracy of pixel based and object based classifications of integrated optical and LiDAR data Land cover maps are generally produced on the basis of high resolution imagery. Recently, LiDAR (Light Detection and Ranging) data have been brought into use in diverse applications including land cover mapping. In this study we attempted to assess the accuracy of land cover classification using both high resolution aerial imagery and LiDAR data (airborne laser scanning, ALS), testing two classification approaches: a pixel-based classification and object-oriented image analysis (OBIA). The study was conducted on three test areas (3 km2 each) in the administrative area of Kraków, Poland, along the course of the Vistula River. They represent three different dominating land cover types of the Vistula River valley. Test site 1 had a semi-natural vegetation, with riparian forests and shrubs, test site 2 represented a densely built-up area, and test site 3 was an industrial site. Point clouds from ALS and ortophotomaps were both captured in November 2007. Point cloud density was on average 16 pt/m2 and it contained additional information about intensity and encoded RGB values. Ortophotomaps had a spatial resolution of 10 cm. From point clouds two raster maps were generated: intensity (1) and (2) normalised Digital Surface Model (nDSM), both with the spatial resolution of 50 cm. To classify the aerial data, a supervised classification approach was selected. Pixel based classification was carried out in ERDAS Imagine software. Ortophotomaps and intensity and nDSM rasters were used in classification. 15 homogenous training areas representing each cover class were chosen. Classified pixels were clumped to avoid salt and pepper effect. Object oriented image object classification was carried out in eCognition software, which implements both the optical and ALS data. Elevation layers (intensity, firs/last reflection, etc.) were used at segmentation stage due to proper wages usage. Thus a more precise and unambiguous boundaries of segments (objects) were received. As a results of the classification 5 classes of land cover (buildings, water, high and low vegetation and others) were extracted. Both pixel-based image analysis and OBIA were conducted with a minimum mapping unit of 10m2. Results were validated on the basis on manual classification and random points (80 per test area), reference data set was manually interpreted using ortophotomaps and expert knowledge of the test site areas.

  6. Visual classification of medical data using MLP mapping.

    PubMed

    Cağatay Güler, E; Sankur, B; Kahya, Y P; Raudys, S

    1998-05-01

    In this work we discuss the design of a novel non-linear mapping method for visual classification based on multilayer perceptrons (MLP) and assigned class target values. In training the perceptron, one or more target output values for each class in a 2-dimensional space are used. In other words, class membership information is interpreted visually as closeness to target values in a 2D feature space. This mapping is obtained by training the multilayer perceptron (MLP) using class membership information, input data and judiciously chosen target values. Weights are estimated in such a way that each training feature of the corresponding class is forced to be mapped onto the corresponding 2-dimensional target value.

  7. Seismic-zonation of Port-au-Prince using pixel- and object-based imaging analysis methods on ASTER GDEM

    USGS Publications Warehouse

    Yong, A.; Hough, S.E.; Cox, B.R.; Rathje, E.M.; Bachhuber, J.; Dulberg, R.; Hulslander, D.; Christiansen, L.; Abrams, M.J.

    2011-01-01

    We report about a preliminary study to evaluate the use of semi-automated imaging analysis of remotely-sensed DEM and field geophysical measurements to develop a seismic-zonation map of Port-au-Prince, Haiti. For in situ data, Vs30 values are derived from the MASW technique deployed in and around the city. For satellite imagery, we use an ASTER GDEM of Hispaniola. We apply both pixel- and object-based imaging methods on the ASTER GDEM to explore local topography (absolute elevation values) and classify terrain types such as mountains, alluvial fans and basins/near-shore regions. We assign NEHRP seismic site class ranges based on available Vs30 values. A comparison of results from imagery-based methods to results from traditional geologic-based approaches reveals good overall correspondence. We conclude that image analysis of RS data provides reliable first-order site characterization results in the absence of local data and can be useful to refine detailed site maps with sparse local data. ?? 2011 American Society for Photogrammetry and Remote Sensing.

  8. Assessing urban vacant land ecosystem services: Urban vacant land as green infrastructure in the City of Roanoke, Virginia

    Treesearch

    Gunwoo Kim; Patrick A. Miller; David J. Nowak

    2015-01-01

    The research reported here quantifies the ecosystem services and values of vacant land using the City of Roanoke, Virginia as a study site. Aerial photo interpretation with ground-truthing was used to identify and catalog vacant parcels of land within the city limits and the results mapped using the i-Tree Canopy and i-Tree Eco models to define land cover classes and...

  9. Using multi-temporal Sentinal-2 imagery for mapping Andean meadows and surface soil moisture in central Chile

    NASA Astrophysics Data System (ADS)

    Araya, Rocio; Fassnacht, Fabian E.; Lopatin, Javier; Hernández, H. Jaime

    2017-04-01

    In the Rio Maipo watershed, situated in central Chile, mining activities are the main factor impacting Andean meadows, through the consumption and exploitation of water and land. As wetlands are vulnerable and particularly susceptible to changes of water supply, alterations and modifications in the hydrological regime have direct effects on vegetation cover. In order to better understand this ecosystem, as well as for conservation planning and resource management, there is a strong need for spatially explicit and update wetland ecosystem assessment. However, there is a lack of baseline dataset and state of knowledge on these habitats. During the last decades remote sensing as evolve as an efficient tool for mapping and monitoring wetland ecosystems at different temporal and spatial scales. Accurate and up-to-date mapping and assessment of wetlands allows monitoring the changes in wetlands' vegetation due to natural and/or anthropogenic disturbances. New freely available spaceborne imagery, like Sentinel-2, supports long term monitoring on a high spatial resolution (10 m). The main aim of this work was to evaluate the potential of multi-temporal Sentinel-2 images in the detection and monitoring of water status of Andean meadows with anthropic disturbances. For these tasks we used bias support vector machines (BSVM), a one-class classifier to map and monitor meadow areas, and the support vector machines regression (SVMR) to estimate surface soil moisture (i.e. top 30 cm). BSVM produces probability maps of the class of interest, were only data of this class is needed as input of the model. One-class classifiers are well suited for situations where the numbers of the training samples from the class of interest is small and/or cover a small fraction of the area to be classified. We found that BSVM was capable to classify the meadow areas with an overall accuracy between 65% and 96%. Meanwhile, surface soil moisture prediction using SVMR reached r2 values between 0.2 and 0.62, while the root mean square errors were between 2.19 g/g and 4.8 g/g. We concluded that BSVM and SVMR are suitable for Andean meadow and surface soil moisture mapping, producing reliable results with few samples. Moreover, Sentinel-2 allows a good understanding of variability within the meadows, and gives a high spatial and temporal resolution to assess future changes and establish whether the site is effectively drained or still maintains the wetness require to preserve these ecosystems.

  10. A comparison between probability and information measures of uncertainty in a simulated soil map and the economic value of imperfect soil information.

    NASA Astrophysics Data System (ADS)

    Lark, R. Murray

    2014-05-01

    Conventionally the uncertainty of a conventional soil map has been expressed in terms of the mean purity of its map units: the probability that the soil profile class examined at a site would be found to correspond to the eponymous class of the simple map unit that is delineated there (Burrough et al, 1971). This measure of uncertainty has an intuitive meaning and is used for quality control in soil survey contracts (Western, 1978). However, it may be of limited value to the manager or policy maker who wants to decide whether the map provides a basis for decision making, and whether the cost of producing a better map would be justified. In this study I extend a published analysis of the economic implications of uncertainty in a soil map (Giasson et al., 2000). A decision analysis was developed to assess the economic value of imperfect soil map information for agricultural land use planning. Random error matrices for the soil map units were then generated, subject to constraints which ensure consistency with fixed frequencies of the different soil classes. For each error matrix the mean map unit purity was computed, and the value of the implied imperfect soil information was computed by the decision analysis. An alternative measure of the uncertainty in a soil map was considered. This is the mean soil map information which is the difference between the information content of a soil observation, at a random location in the region, and the information content of a soil observation given that the map unit is known. I examined the relationship between the value of imperfect soil information and the purity and information measures of map uncertainty. In both cases there was considerable variation in the economic value of possible maps with fixed values of the uncertainty measure. However, the correlation was somewhat stronger with the information measure, and there was a clear upper bound on the value of an imperfect soil map when the mean information takes some particular value. This suggests that the information measure may be a useful one for general communication of the value of soil and similar thematic data. Burrough, P.A., Beckett, P.H.T., Jarvis, M.G., 1971. The relation between cost and utility in soil survey. J. Soil Sci. 22, 359-394. Giasson, E., van Es, C, van Wambeke, A., Bryant, R.B. 2000. Assessing the economic value of soil information using decision analysis techniques. Soil Science 165, 971-978 Western, S., 1978. Soil survey contracts and quality control. Oxford Univ. Press, Oxford.

  11. A comparison of the IGBP DISCover and University of Maryland 1 km global land cover products

    USGS Publications Warehouse

    Hansen, M.C.; Reed, B.

    2000-01-01

    Two global 1 km land cover data sets derived from 1992-1993 Advanced Very High Resolution Radiometer (AVHRR) data are currently available, the International Geosphere-Biosphere Programme Data and Information System (IGBP-DIS) DISCover and the University of Maryland (UMd) 1 km land cover maps. This paper makes a preliminary comparison of the methodologies and results of the two products. The DISCover methodology employed an unsupervised clustering classification scheme on a per-continent basis using 12 monthly maximum NDVI composites as inputs. The UMd approach employed a supervised classification tree method in which temporal metrics derived from all AVHRR bands and the NDVI were used to predict class membership across the entire globe. The DISCover map uses the IGBP classification scheme, while the UMd map employs a modified IGBP scheme minus the classes of permanent wetlands, cropland/natural vegetation mosaic and ice and snow. Global area totals of aggregated vegetation types are very similar and have a per-pixel agreement of 74%. For tall versus short/no vegetation, the per-pixel agreement is 84%. For broad vegetation types, core areas map similarly, while transition zones around core areas differ significantly. This results in high regional variability between the maps. Individual class agreement between the two 1 km maps is 49%. Comparison of the maps at a nominal 0.5 resolution with two global ground-based maps shows an improvement of thematic concurrency of 46% when viewing average class agreement. The absence of the cropland mosaic class creates a difficulty in comparing the maps, due to its significant extent in the DISCover map. The DISCover map, in general, has more forest, while the UMd map has considerably more area in the intermediate tree cover classes of woody savanna/ woodland and savanna/wooded grassland.

  12. Student Perceptions of Classroom Learning Environments: Development of the ClassMaps Survey

    ERIC Educational Resources Information Center

    Doll, Beth; Spies, Robert A.; LeClair, Courtney M.; Kurien, Sarah A.; Foley, Brett P.

    2010-01-01

    The purpose of this study was to describe the means, variability, internal consistency reliability, and structural validity evidence of the ClassMaps Survey, a measure of student perceptions of classroom learning environments. The ClassMaps Survey is a 55-item student rating scale of eight important classroom characteristics. The survey provides a…

  13. Removing non-urban roads from the National Land Cover Database to create improved urban maps for the United States, 1992-2011

    USGS Publications Warehouse

    Soulard, Christopher E.; Acevedo, William; Stehman, Stephen V.

    2018-01-01

    Quantifying change in urban land provides important information to create empirical models examining the effects of human land use. Maps of developed land from the National Land Cover Database (NLCD) of the conterminous United States include rural roads in the developed land class and therefore overestimate the amount of urban land. To better map the urban class and understand how urban lands change over time, we removed rural roads and small patches of rural development from the NLCD developed class and created four wall-to-wall maps (1992, 2001, 2006, and 2011) of urban land. Removing rural roads from the NLCD developed class involved a multi-step filtering process, data fusion using geospatial road and developed land data, and manual editing. Reference data classified as urban or not urban from a stratified random sample was used to assess the accuracy of the 2001 and 2006 urban and NLCD maps. The newly created urban maps had higher overall accuracy (98.7 percent) than the NLCD maps (96.2 percent). More importantly, the urban maps resulted in lower commission error of the urban class (23 percent versus 57 percent for the NLCD in 2006) with the trade-off of slightly inflated omission error (20 percent for the urban map, 16 percent for NLCD in 2006). The removal of approximately 230,000 km2 of rural roads from the NLCD developed class resulted in maps that better characterize the urban footprint. These urban maps are more suited to modeling applications and policy decisions that rely on quantitative and spatially explicit information regarding urban lands.

  14. Site Characterization at a Tidal Energy Site in the East River, NY (usa)

    NASA Astrophysics Data System (ADS)

    Gunawan, B.; Neary, V. S.; Colby, J.

    2012-12-01

    A comprehensive tidal energy site characterization is performed using ADV measurements of instantaneous horizontal current magnitude and direction at the planned hub centerline of a tidal turbine over a two month period, and contributes to the growing data base of tidal energy site hydrodynamic conditions. The temporal variation, mean current statistics, and turbulence of the key tidal hydrodynamic parameters are examined in detail, and compared to estimates from two tidal energy sites in Puget Sound. Tidal hydrodynamic conditions, including mean annual current (at hub height), the speed of extreme gusts (instantaneous horizontal currents acting normal to the rotor plane), and turbulence intensity (as proposed here, relative to a mean current of 2 m s-1) can vary greatly among tidal energy sites. Comparison of hydrodynamic conditions measured in the East River tidal straight in New York City with those reported for two tidal energy sites in Puget Sound indicate differences of mean annual current speeds, difference in the instantaneous current speeds of extreme gusts, and differences in turbulence intensities. Significant differences in these parameters among the tidal energy sites, and with the tidal resource assessment map, highlight the importance of conducting site resource characterization with ADV measurements at the machine scale. As with the wind industry, which adopted an International Electrotechnical Commission (IEC) wind class standard to aid in the selection of wind turbines for a particular site, it is recommended that the tidal energy industry adopt an appropriate standard for tidal current classes. Such a standard requires a comprehensive field campaign at multiple tidal energy sites that can identify the key hydrodynamic parameters for tidal current site classification, select a list of tidal energy sites that exhibit the range of hydrodynamic conditions that will be encountered, and adopt consistent measurement practices (standards) for site classification.

  15. Mapping Vegetation Community Types in a Highly-Disturbed Landscape: Integrating Hiearchical Object-Based Image Analysis with Digital Surface Models

    NASA Astrophysics Data System (ADS)

    Snavely, Rachel A.

    Focusing on the semi-arid and highly disturbed landscape of San Clemente Island, California, this research tests the effectiveness of incorporating a hierarchal object-based image analysis (OBIA) approach with high-spatial resolution imagery and light detection and range (LiDAR) derived canopy height surfaces for mapping vegetation communities. The study is part of a large-scale research effort conducted by researchers at San Diego State University's (SDSU) Center for Earth Systems Analysis Research (CESAR) and Soil Ecology and Restoration Group (SERG), to develop an updated vegetation community map which will support both conservation and management decisions on Naval Auxiliary Landing Field (NALF) San Clemente Island. Trimble's eCognition Developer software was used to develop and generate vegetation community maps for two study sites, with and without vegetation height data as input. Overall and class-specific accuracies were calculated and compared across the two classifications. The highest overall accuracy (approximately 80%) was observed with the classification integrating airborne visible and near infrared imagery having very high spatial resolution with a LiDAR derived canopy height model. Accuracies for individual vegetation classes differed between both classification methods, but were highest when incorporating the LiDAR digital surface data. The addition of a canopy height model, however, yielded little difference in classification accuracies for areas of very dense shrub cover. Overall, the results show the utility of the OBIA approach for mapping vegetation with high spatial resolution imagery, and emphasizes the advantage of both multi-scale analysis and digital surface data for accuracy characterizing highly disturbed landscapes. The integrated imagery and digital canopy height model approach presented both advantages and limitations, which have to be considered prior to its operational use in mapping vegetation communities.

  16. Inventory and analysis of rangeland resources of the state land block on Parker Mountain, Utah

    NASA Technical Reports Server (NTRS)

    Jaynes, R. A. (Principal Investigator)

    1983-01-01

    High altitude color infrared (CIR) photography was interpreted to provide an 1:24,000 overlay to U.S.G.S. topographic maps. The inventory and analysis of rangeland resources was augmented by the digital analysis of LANDSAT MSS data. Available geology, soils, and precipitation maps were used to sort out areas of confusion on the CIR photography. The map overlay from photo interpretation was also prepared with reference to print maps developed from LANDSAT MSS data. The resulting map overlay has a high degree of interpretive and spatial accuracy. An unacceptable level of confusion between the several sagebrush types in the MSS mapping was largely corrected by introducing ancillary data. Boundaries from geology, soils, and precipitation maps, as well as field observations, were digitized and pixel classes were adjusted according to the location of pixels with particular spectral signatures with respect to such boundaries. The resulting map, with six major cover classes, has an overall accuracy of 89%. Overall accuracy was 74% when these six classes were expanded to 20 classes.

  17. Model-based classification of CPT data and automated lithostratigraphic mapping for high-resolution characterization of a heterogeneous sedimentary aquifer

    PubMed Central

    Mallants, Dirk; Batelaan, Okke; Gedeon, Matej; Huysmans, Marijke; Dassargues, Alain

    2017-01-01

    Cone penetration testing (CPT) is one of the most efficient and versatile methods currently available for geotechnical, lithostratigraphic and hydrogeological site characterization. Currently available methods for soil behaviour type classification (SBT) of CPT data however have severe limitations, often restricting their application to a local scale. For parameterization of regional groundwater flow or geotechnical models, and delineation of regional hydro- or lithostratigraphy, regional SBT classification would be very useful. This paper investigates the use of model-based clustering for SBT classification, and the influence of different clustering approaches on the properties and spatial distribution of the obtained soil classes. We additionally propose a methodology for automated lithostratigraphic mapping of regionally occurring sedimentary units using SBT classification. The methodology is applied to a large CPT dataset, covering a groundwater basin of ~60 km2 with predominantly unconsolidated sandy sediments in northern Belgium. Results show that the model-based approach is superior in detecting the true lithological classes when compared to more frequently applied unsupervised classification approaches or literature classification diagrams. We demonstrate that automated mapping of lithostratigraphic units using advanced SBT classification techniques can provide a large gain in efficiency, compared to more time-consuming manual approaches and yields at least equally accurate results. PMID:28467468

  18. Model-based classification of CPT data and automated lithostratigraphic mapping for high-resolution characterization of a heterogeneous sedimentary aquifer.

    PubMed

    Rogiers, Bart; Mallants, Dirk; Batelaan, Okke; Gedeon, Matej; Huysmans, Marijke; Dassargues, Alain

    2017-01-01

    Cone penetration testing (CPT) is one of the most efficient and versatile methods currently available for geotechnical, lithostratigraphic and hydrogeological site characterization. Currently available methods for soil behaviour type classification (SBT) of CPT data however have severe limitations, often restricting their application to a local scale. For parameterization of regional groundwater flow or geotechnical models, and delineation of regional hydro- or lithostratigraphy, regional SBT classification would be very useful. This paper investigates the use of model-based clustering for SBT classification, and the influence of different clustering approaches on the properties and spatial distribution of the obtained soil classes. We additionally propose a methodology for automated lithostratigraphic mapping of regionally occurring sedimentary units using SBT classification. The methodology is applied to a large CPT dataset, covering a groundwater basin of ~60 km2 with predominantly unconsolidated sandy sediments in northern Belgium. Results show that the model-based approach is superior in detecting the true lithological classes when compared to more frequently applied unsupervised classification approaches or literature classification diagrams. We demonstrate that automated mapping of lithostratigraphic units using advanced SBT classification techniques can provide a large gain in efficiency, compared to more time-consuming manual approaches and yields at least equally accurate results.

  19. Use of radar remote sensing (RADARSAT) to map winter wetland habitat for shorebirds in an agricultural landscape.

    PubMed

    Taft, Oriane W; Haig, Susan M; Kiilsgaard, Chris

    2004-05-01

    Many of today's agricultural landscapes once held vast amounts of wetland habitat for waterbirds and other wildlife. Successful restoration of these landscapes relies on access to accurate maps of the wetlands that remain. We used C-band (5.6-cm-wavelength), HH-polarized radar remote sensing (RADARSAT) at a 38 degrees incidence angle (8-m resolution) to map the distribution of winter shorebird (Charadriiformes) habitat on agricultural lands in the Willamette Valley of western Oregon. We acquired imagery on three dates (10 December 1999, 27 January 2000, and 15 March 2000) and simultaneously collected ground reference data to classify radar signatures and evaluate map accuracy of four habitat classes: (1) wet with < or = 50% vegetation (considered optimal shorebird habitat), (2) wet with > 50% vegetation, (3) dry with < or = 50% vegetation, and (4) dry with > 50% vegetation. Overall accuracy varied from 45 to 60% among the three images, but the accuracy of focal class 1 was greater, ranging from 72 to 80%. Class 4 coverage was stable and dominated maps (40% of mapped study area) for all three dates, while coverage of class 3 decreased slightly throughout the study period. Among wet classes, class 1 was most abundant (about 30% coverage) in December and January, decreasing in March to approximately 15%. Conversely, class 2 increased dramatically from January to March, likely due to transition from class 1 as vegetation grew. This approach was successful in detecting optimal habitat for shorebirds on agricultural lands. For modest classification schemes, radar remote sensing is a valuable option for wetland mapping in areas where cloud cover is persistent.

  20. Class 1 overview of cultural resources for the Western Area Power Administration Salt Lake City Area Integrated Projects electric power marketing environmental impact statement

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Moeller, K.L.; Malinowski, L.M.; Hoffecker, J.F.

    1993-11-01

    Argonne National Laboratory conducted an inventory of known archaeological and historic sites in areas that could be affected by the hydropower operation alternatives under analysis in the power marketing environmental impact statement for the Western Area Power Administration`s Salt Lake City Area Integrated Projects. The study areas included portions of the Green River (Flaming Gorge Dam to Cub Creek) in Utah and Colorado and the Gunnison River (Blue Mesa Reservoir to Crystal Dam) in Colorado. All previous archaeological surveys and previously recorded prehistoric and historic sites, structures, and features were inventoried and plotted on maps (only survey area maps aremore » included in this report). The surveys were classified by their level of intensity, and the sites were classified according to their age, type, and contents. These data (presented here in tabular form) permit a general assessment of the character and distribution of archaeological remains in the study areas, as well as an indication of the sampling basis for such an assessment. To provide an adequate context for the descriptions of the archaeological and historic sites, this report also presents overviews of the environmental setting and the regional prehistory, history, and ethnography for each study area.« less

  1. Multiple Scale Landscape Pattern Index Interpretation for the Persistent Monitoring of Land-Cover and Land-Use

    NASA Astrophysics Data System (ADS)

    Spivey, Alvin J.

    Mapping land-cover land-use change (LCLUC) over regional and continental scales, and long time scales (years and decades), can be accomplished using thematically identified classification maps of a landscape---a LCLU class map. Observations of a landscape's LCLU class map pattern can indicate the most relevant process, like hydrologic or ecologic function, causing landscape scale environmental change. Quantified as Landscape Pattern Metrics (LPM), emergent landscape patterns act as Landscape Indicators (LI) when physically interpreted. The common mathematical approach to quantifying observed landscape scale pattern is to have LPM measure how connected a class exists within the landscape, through nonlinear local kernel operations of edges and gradients in class maps. Commonly applied kernel-based LPM that consistently reveal causal processes are Dominance, Contagion, and Fractal Dimension. These kernel-based LPM can be difficult to interpret. The emphasis on an image pixel's edge by gradient operations and dependence on an image pixel's existence according to classification accuracy limit the interpretation of LPM. For example, the Dominance and Contagion kernel-based LPM very similarly measure how connected a landscape is. Because of this, their reported edge measurements of connected pattern correlate strongly, making their results ambiguous. Additionally, each of these kernel-based LPM are unscalable when comparing class maps from separate imaging system sensor scenarios that change the image pixel's edge position (i.e. changes in landscape extent, changes in pixel size, changes in orientation, etc), and can only interpret landscape pattern as accurately as the LCLU map classification will allow. This dissertation discusses the reliability of common LPM in light of imaging system effects such as: algorithm classification likelihoods, LCLU classification accuracy due to random image sensor noise, and image scale. A description of an approach to generating well behaved LPM through a Fourier system analysis of the entire class map, or any subset of the class map (e.g. the watershed) is the focus of this work. The Fourier approach provides four improvements for LPM. First, the approach reduces any correlation between metrics by developing them within an independent (i.e. orthogonal) Fourier vector space; a Fourier vector space that includes relevant physically representative parameters ( i.e. between class Euclidean distance). Second, accounting for LCLU classification accuracy the LPM measurement precision and measurement accuracy are reported. Third, the mathematics of this approach makes it possible to compare image data captured at separate pixel resolutions or even from separate landscape scenes. Fourth, Fourier interpreted landscape pattern measurement can be a measure of the entire landscape shape, of individual landscape cover change, or as exchanges between class map subsets by operating on the entire class map, subset of class map, or separate subsets of class map[s] respectively. These LCLUC LPM are examined along the 1991-1992 and 2000-2001 records of National Land Cover Database Landsat data products. Those LPM results are used in a predictive fecal coliform model at the South Carolina watershed level in the context of past (validation study) change. Finally, the proposed LPM ability to be used as ecologically relevant environmental indicators is tested by correlating metrics with other, well known LI that consistently reveal causal processes in the literature.

  2. A theory of photometric stereo for a class of diffuse non-Lambertian surfaces

    NASA Technical Reports Server (NTRS)

    Tagare, Hemant D.; Defigueiredo, Rui J. P.

    1991-01-01

    A theory of photometric stereo is proposed for a large class of non-Lambertian reflectance maps. The authors review the different reflectance maps proposed in the literature for modeling reflection from real-world surfaces. From this, they obtain a mathematical class of reflectance maps to which the maps belong. They show that three lights can be sufficient for a unique inversion of the photometric stereo equation for the entire class of reflectance maps. They also obtain a constraint on the positions of light sources for obtaining this solution. They investigate the sufficiency of three light sources to estimate the surface normal and the illuminant strength. The issue of completeness of reconstruction is addressed. They shown that if k lights are sufficient for a unique inversion, 2k lights are necessary for a complete inversion.

  3. Landfill site selection using combination of GIS and fuzzy AHP, a case study: Iranshahr, Iran.

    PubMed

    Torabi-Kaveh, M; Babazadeh, R; Mohammadi, S D; Zaresefat, M

    2016-03-09

    One of the most important recent challenges in solid waste management throughout the world is site selection of sanitary landfill. Commonly, because of simultaneous effects of social, environmental, and technical parameters on suitability of a landfill site, landfill site selection is a complex process and depends on several criteria and regulations. This study develops a multi-criteria decision analysis (MCDA) process, which combines geographic information system (GIS) analysis with a fuzzy analytical hierarchy process (FAHP), to determine suitable sites for landfill construction in Iranshahr County, Iran. The GIS was used to calculate and classify selected criteria and FAHP was used to assess the criteria weights based on their effectiveness on selection of potential landfill sites. Finally, a suitability map was prepared by overlay analyses and suitable areas were identified. Four suitability classes within the study area were separated, including high, medium, low, and very low suitability areas, which represented 18%, 15%, 55%, and 12% of the study area, respectively. © The Author(s) 2016.

  4. Rapid Carbon Assessment Project: Data Summary and Availability

    NASA Astrophysics Data System (ADS)

    Wills, Skye; Loecke, Terry; Roecker, Stephen; Beaudette, Dylan; Libohova, Zamir; Monger, Curtis; Lindbo, David

    2017-04-01

    The Rapid Carbon Assessment (RaCA) project was undertaken to estimate regional soil organic carbon (SOC) stocks across the conterminous United States (CONUS) as a one-time event. Sample locations were selected randomly using the NRI (National Resource Inventory) sampling framework covering all areas in CONUS with SSURGO certified maps as of Dec 2012. Within each of 17 regions, sites were selected by a combination of soil and land use/cover groups (LUGR). At each of more than 6,000 sites five pedons were described and sampled to a depth of 100cm (one central and 4 satellites 30m in each cardinal direction). There were 144,833 samples described from 32,084 pedons at 6, 017 sites. A combination of measurement and modeled bulk density was used for all samples. A visible near-infrared (VNIR) spectrophotometer was used to scan each sample for prediction of soil carbon contents. The samples of each central pedon were analyzed by the Kellogg Soil Survey Laboratory for combustion carbon and calcimeter inorganic carbon. SOC stocks were calculated for each pedon using a standard fixed depth technique to depths of 5, 30 and 100cm. Pedon SOC stocks were transformed to better approach normality before LUGR, regional and land use/cover summaries were calculated. The values reported are geometric means. A detailed spatial map can be produced using LUGR mean assignment to correlated pixels. LUGR values range from 1 to 3,000 Mg ha-1. While some artifacts are visible due to the stratified nature of sampling and extrapolation, the predictions are generally smooth and highlight some distinct geomorphic features including the sandhills in the Great Plains in the central US, mountainous regions in the West and coastal wetlands in the East. Regional averages range from 46 Mg ha-1 in the desert Southwest to 182 Mg ha-1 in the Northeast. Regional trends correlate to climate variables such as precipitation and potential evapotranspiration. While land use/cover classes vary in mean values, the range within each class overlap and they are not significantly different. As expected, wetlands have the highest SOC stocks, 261 Mg ha-1, and range lands the lowest, 51 Mg ha-1. This is due primarily to the great stocks between 30 and 100cm in wetlands. Ongoing work includes incorporating measurement error into uncertainties and using Bayesian inference to test differences between land use/cover classes. Project information and raw data including sample descriptions, sample data, processing scripts, VNIR scans, and maps are available via web and R based packages. Future work will be done to map carbon across landscapes using environmental covariates and produce probabilities of C concentrations and stocks across multiple land use and management scenarios

  5. Machine learning for predicting soil classes in three semi-arid landscapes

    USGS Publications Warehouse

    Brungard, Colby W.; Boettinger, Janis L.; Duniway, Michael C.; Wills, Skye A.; Edwards, Thomas C.

    2015-01-01

    Mapping the spatial distribution of soil taxonomic classes is important for informing soil use and management decisions. Digital soil mapping (DSM) can quantitatively predict the spatial distribution of soil taxonomic classes. Key components of DSM are the method and the set of environmental covariates used to predict soil classes. Machine learning is a general term for a broad set of statistical modeling techniques. Many different machine learning models have been applied in the literature and there are different approaches for selecting covariates for DSM. However, there is little guidance as to which, if any, machine learning model and covariate set might be optimal for predicting soil classes across different landscapes. Our objective was to compare multiple machine learning models and covariate sets for predicting soil taxonomic classes at three geographically distinct areas in the semi-arid western United States of America (southern New Mexico, southwestern Utah, and northeastern Wyoming). All three areas were the focus of digital soil mapping studies. Sampling sites at each study area were selected using conditioned Latin hypercube sampling (cLHS). We compared models that had been used in other DSM studies, including clustering algorithms, discriminant analysis, multinomial logistic regression, neural networks, tree based methods, and support vector machine classifiers. Tested machine learning models were divided into three groups based on model complexity: simple, moderate, and complex. We also compared environmental covariates derived from digital elevation models and Landsat imagery that were divided into three different sets: 1) covariates selected a priori by soil scientists familiar with each area and used as input into cLHS, 2) the covariates in set 1 plus 113 additional covariates, and 3) covariates selected using recursive feature elimination. Overall, complex models were consistently more accurate than simple or moderately complex models. Random forests (RF) using covariates selected via recursive feature elimination was consistently the most accurate, or was among the most accurate, classifiers between study areas and between covariate sets within each study area. We recommend that for soil taxonomic class prediction, complex models and covariates selected by recursive feature elimination be used. Overall classification accuracy in each study area was largely dependent upon the number of soil taxonomic classes and the frequency distribution of pedon observations between taxonomic classes. Individual subgroup class accuracy was generally dependent upon the number of soil pedon observations in each taxonomic class. The number of soil classes is related to the inherent variability of a given area. The imbalance of soil pedon observations between classes is likely related to cLHS. Imbalanced frequency distributions of soil pedon observations between classes must be addressed to improve model accuracy. Solutions include increasing the number of soil pedon observations in classes with few observations or decreasing the number of classes. Spatial predictions using the most accurate models generally agree with expected soil–landscape relationships. Spatial prediction uncertainty was lowest in areas of relatively low relief for each study area.

  6. Networked differential GPS system

    NASA Technical Reports Server (NTRS)

    Sheynblat, Leonid (Inventor); Kalafus, Rudolph M. (Inventor); Loomis, Peter V. W. (Inventor); Mueller, K. Tysen (Inventor)

    1994-01-01

    An embodiment of the present invention relates to a worldwide network of differential GPS reference stations (NDGPS) that continually track the entire GPS satellite constellation and provide interpolations of reference station corrections tailored for particular user locations between the reference stations Each reference station takes real-time ionospheric measurements with codeless cross-correlating dual-frequency carrier GPS receivers and computes real-time orbit ephemerides independently. An absolute pseudorange correction (PRC) is defined for each satellite as a function of a particular user's location. A map of the function is constructed, with iso-PRC contours. The network measures the PRCs at a few points, so-called reference stations and constructs an iso-PRC map for each satellite. Corrections are interpolated for each user's site on a subscription basis. The data bandwidths are kept to a minimum by transmitting information that cannot be obtained directly by the user and by updating information by classes and according to how quickly each class of data goes stale given the realities of the GPS system. Sub-decimeter-level kinematic accuracy over a given area is accomplished by establishing a mini-fiducial network.

  7. Application of ERTS-1 imagery in mapping and managing soil and range resources in the Sand Hills region of Nebraska

    NASA Technical Reports Server (NTRS)

    Seevers, P. M.; Lewis, D. T.; Drew, J. V.

    1974-01-01

    Interpretations of imagery from the Earth Resources Technology Satellite (ERTS-1) indicate that soil associations and attendant range sites can be identified on the basis of vegetation and topography using multi-temporal imagery. Optical density measurements of imagery from the visible red band of the multispectral scanner (MSS band 5) obtained during the growing season were related to field measurements of vegetative biomass, a factor that closely parallels range condition class on specific range sites. ERTS-1 imagery also permitted inventory and assessment of center-pivot irrigation systems in the Sand Hills region in relation to soil and topographic conditions and energy requirements.

  8. Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts.

    PubMed

    Schwientek, Patrick; Neshat, Armin; Kalinowski, Jörn; Klein, Andreas; Rückert, Christian; Schneiker-Bekel, Susanne; Wendler, Sergej; Stoye, Jens; Pühler, Alfred

    2014-11-20

    Actinoplanes sp. SE50/110 is the producer of the alpha-glucosidase inhibitor acarbose, which is an economically relevant and potent drug in the treatment of type-2 diabetes mellitus. In this study, we present the detection of transcription start sites on this genome by sequencing enriched 5'-ends of primary transcripts. Altogether, 1427 putative transcription start sites were initially identified. With help of the annotated genome sequence, 661 transcription start sites were found to belong to the leader region of protein-coding genes with the surprising result that roughly 20% of these genes rank among the class of leaderless transcripts. Next, conserved promoter motifs were identified for protein-coding genes with and without leader sequences. The mapped transcription start sites were finally used to improve the annotation of the Actinoplanes sp. SE50/110 genome sequence. Concerning protein-coding genes, 41 translation start sites were corrected and 9 novel protein-coding genes could be identified. In addition to this, 122 previously undetermined non-coding RNA (ncRNA) genes of Actinoplanes sp. SE50/110 were defined. Focusing on antisense transcription start sites located within coding genes or their leader sequences, it was discovered that 96 of those ncRNA genes belong to the class of antisense RNA (asRNA) genes. The remaining 26 ncRNA genes were found outside of known protein-coding genes. Four chosen examples of prominent ncRNA genes, namely the transfer messenger RNA gene ssrA, the ribonuclease P class A RNA gene rnpB, the cobalamin riboswitch RNA gene cobRS, and the selenocysteine-specific tRNA gene selC, are presented in more detail. This study demonstrates that sequencing of enriched 5'-ends of primary transcripts and the identification of transcription start sites are valuable tools for advanced genome annotation of Actinoplanes sp. SE50/110 and most probably also for other bacteria. Copyright © 2014 Elsevier B.V. All rights reserved.

  9. GIS and Multi-criteria evaluation (MCE) for landform geodiversity assessment

    NASA Astrophysics Data System (ADS)

    Najwer, Alicja; Reynard, Emmanuel; Zwoliński, Zbigniew

    2014-05-01

    In geomorphology, at the contemporary stage of methodology and methodological development, it is very significant to undertake new research problems, from theoretical and application point of view. As an example of applying geoconservation results in landscape studies and environmental conservation one can refer to the problem of the landform geodiversity. The concept of geodiversity was created relatively recently and, therefore, little progress has been made in its objective assessment and mapping. In order to ensure clarity and coherency, it is recommended that the evaluation process to be rigorous. Multi-criteria evaluation meets these criteria well. The main objective of this presentation is to demonstrate a new methodology for the assessment of the selected natural environment components in response to the definition of geodiversity, as well as visualization of the landforms geodiversity, using the opportunities offered by the geoinformation environment. The study area consists of two peculiar alpine valleys: Illgraben and Derborence, located in the Swiss Alps. Apart from glacial and fluvial landforms, the morphology of these two sites is largely due to the extreme phenomena(rockslides, torrential processes). Both valleys are recognized as geosites of national importance. The basis of the assessment is the selection of the geographical environment features. Firstly, six factor maps were prepared for each area: the landform energy, the landform fragmentation, the contemporary landform preservation, geological settings and hydrographic elements (lakes and streams). Input maps were then standardized and resulted from map algebra operations carried out by multi-criteria evaluation (MCE) with GIS-based Weighted Sum technique. Weights for particular classes were calculated using pair-comparison matrixes method. The final stage of deriving landform geodiversity maps was the reclassification procedure with the use of natural breaks method. The final maps of landform geodiversity were generated with the use of the same methodological algorithm and multiplication of each factor map by its given weight with consistency ratio = 0.07. However, the results that were obtained were radically different. The map of geodiversity for Derborence is characterized by much more significant fragmentation. Areas of low geodiveristy constitute a greater contribution. In the Illgraben site, there is a significant contribution of high and very high geodiversity classes. The obtained maps were reviewed during the field exploration with positive results, which gives a basis to conclude that the methodology used is correct and can be applied for other similar areas. Therefore, it is very important to develop an objective methodology that can be implemented for areas at the local and regional scale, but also giving satisfactory results for areas with a landscape different from the alpine one. The maps of landform geodiversity may be used for environment conservation management, preservation of specific features within the geosite perimeter, spatial planning or tourism management.

  10. Conceptual and linguistic representations of kinds and classes

    PubMed Central

    Prasada, Sandeep; Hennefield, Laura; Otap, Daniel

    2013-01-01

    We investigate the hypothesis that our conceptual systems provide two formally distinct ways of representing categories by investigating the manner in which lexical nominals (e.g., tree, picnic table) and phrasal nominals (e.g., black bird, birds that like rice) are interpreted. Four experiments found that lexical nominals may be mapped onto kind representations whereas phrasal nominals map onto class representations but not kind representations. Experiment 1 found that phrasal nominals, unlike lexical nominals, are mapped onto categories whose members need not be of a single kind. Experiments 2 and 3 found that categories named by lexical nominals enter into both class inclusion and kind hierarchies and thus support both class inclusion (is a) and kind specification (kind of) relations, whereas phrasal nominals map onto class representations which support only class inclusion relations. Experiment 4 showed that the two types of nominals represent hierarchical relations in different ways. Phrasal nominals (e.g., white bear) are mapped onto classes that have criteria of membership in addition to those specified by the class picked out by the head noun of the phrase (e.g., bear). In contrast, lexical nominals (e.g., polar bear) specify one way to meet the criteria specified by the more general kind concept (e.g., bear). Implications for the language-conceptual system interface, representation of hierarchical relations, lexicalization, and theories of conceptual combination are discussed. PMID:22671567

  11. Modelling macroseismic observations for historical earthquakes: the cases of the M = 7.0, 1954 Sofades and M = 6.8, 1957 Velestino events (central Greece)

    NASA Astrophysics Data System (ADS)

    Papazachos, Giannis; Papazachos, Costas; Skarlatoudis, Andreas; Kkallas, Harris; Lekkas, Efthimios

    2016-01-01

    We attempt to model the spatial distribution of the strong ground motion for the large M = 7.0, 1954 Sofades and M = 6.8, 1957 Velestino events (southern Thessaly basin, central Greece), using the macroseismic intensities ( I M M up to 9+) observed within the broader Thessaly area. For this reason, we employ a modified stochastic method realised by the EXSIM algorithm for extended sources, in order to reproduce the damage distribution of these earthquakes, in an attempt to combine existing earthquake information and appropriate scaling relations with surface geology and to investigate the efficiency of the available macroseismic data. For site-effects assessment, we use a new digital geological map of the broader Thessaly basin, where geological formations are grouped by age and mapped on appropriate NEHRP soil classes. Using the previous approach, we estimate synthetic time series for different rupture scenarios and employ various calibrating relations between PGA/PGV and macroseismic intensity, allowing the generation of synthetic (stochastic) isoseismals. Also, different site amplification factors proposed for the broader Aegean area, according to local geology, are tested. Finally, we also perform a sensitivity analysis of the fault location, taking into account the available neotectonic data for the broader southern Thessaly fault zone. The finally determined fault locations are different than previously proposed, in agreement with the available neotectonic information. The observed macroseismic intensities are in good agreement with the ones derived from the synthetic waveforms, verifying both the usefulness of the approach, as well as of the macroseismic data used. Finally, site-effects show clear correlation with the geological classification employed, with constant amplification factors for each soil class generally providing better results than generic transfer functions.

  12. Quantitative high resolution mapping of HvMLH3 foci in barley pachytene nuclei reveals a strong distal bias and weak interference

    PubMed Central

    Phillips, Dylan; Wnetrzak, Joanna; Nibau, Candida; Barakate, Abdellah; Ramsay, Luke; Wright, Frank; Higgins, James D.; Perry, Ruth M.; Jenkins, Glyn

    2013-01-01

    In barley (Hordeum vulgare L.), chiasmata (the physical sites of genetic crossovers) are skewed towards the distal ends of chromosomes, effectively consigning a large proportion of genes to recombination coldspots. This has the effect of limiting potential genetic variability, and of reducing the efficiency of map-based cloning and breeding approaches for this crop. Shifting the sites of recombination to more proximal chromosome regions by forward and reverse genetic means may be profitable in terms of realizing the genetic potential of the species, but is predicated upon a better understanding of the mechanisms governing the sites of these events, and upon the ability to recognize real changes in recombination patterns. The barley MutL Homologue (HvMLH3), a marker for class I interfering crossovers, has been isolated and a specific antibody has been raised. Immunolocalization of HvMLH3 along with the synaptonemal complex transverse filament protein ZYP1, used in conjunction with fluorescence in situ hybridization (FISH) tagging of specific barley chromosomes, has enabled access to the physical recombination landscape of the barley cultivars Morex and Bowman. Consistent distal localization of HvMLH3 foci throughout the genome, and similar patterns of HvMLH3 foci within bivalents 2H and 3H have been observed. A difference in total numbers of HvMLH3 foci between these two cultivars has been quantified, which is interpreted as representing genotypic variation in class I crossover frequency. Discrepancies between the frequencies of HvMLH3 foci and crossover frequencies derived from linkage analysis point to the existence of at least two crossover pathways in barley. It is also shown that interference of HvMLH3 foci is relatively weak compared with other plant species. PMID:23554258

  13. Rapid Reconnaissance Mapping of Volatile Organic Compounds by Photoionization Detection at the USGS Amargosa Desert Research Site

    NASA Astrophysics Data System (ADS)

    Thordsen, J. J.; Stonestrom, D. A.; Conaway, C. H.; Luo, W.; Baker, R. J.; Andraski, B. J.

    2015-12-01

    Two types of handheld photoionization detectors were evaluated in April 2015 for reconnaissance mapping of volatile organic compounds (VOCs) in the unsaturated zone surrounding legacy disposal trenches for commercial low-level radioactive waste near Beatty, Nevada (USA). This method is rapid and cost effective when compared to the more conventional procedure used ate the site, where VOCs are collected on sorbent cartridges in the field followed by thermal desorption, gas chromatographic separation, and quantitation by mass spectroscopy in the laboratory (TD-GC-MS analysis). Using the conventional method, more than sixty distinct compounds have been identified in the 110-m deep unsaturated zone vapor phase, and the changing nature of the VOC mix over a 15-yr timeframe has been recorded. Analyses to date have identified chlorofluorocarbons (CFCs), chlorinated ethenes, chlorinated ethanes, gasoline-range hydrocarbons, chloroform, and carbon tetrachloride as the main classes of VOCs present. The VOC plumes emanating from the various subgroups of trenches are characterized by different relative abundances of the compound classes, and total VOC concentrations that cover several orders of magnitude. One of the photoionization detectors, designed for industrial compliance testing, lacked sufficient dynamic range and sensitivity to be useful. The other, a wide range (1 ppb-20,000 ppm) research-grade instrument with a 10.6 eV photoionization detector (PID) lamp, produced promising results, detecting roughly half of the non-CFC VOCs present. The rapid and inexpensive photoionization method is envisioned as a screening tool to supplement, expedite, and direct the collection of additional samples for TD-GC-MS analyses at this and other VOC-contaminated sites.

  14. Development and use of remote sensing tools to study the impact of water hyacinth (Eichhornia crassipes) invasion in an estuarine ecosystem

    NASA Astrophysics Data System (ADS)

    Khanna, Shruti

    Invasive species are the second greatest threat to biological diversity after habitat loss and fragmentation. Remote sensing is being used to map and model invasive species spread with increasing frequency every year. This study illustrates how remote sensing techniques can be used to map invasive species, examine the effects of environmental factors and management on their distribution, and look at the community response to spread or reduction in invasive species cover. Water hyacinth, a floating aquatic macrophyte, boasts an intimidating reputation as an aggressive global invasive. Water hyacinth was mapped in the Delta by pooling together several remote sensing techniques such as spectral indices, linear spectral unmixing, spectral mixture analysis, continuum removal, and LiDAR derived canopy height in a decision tree format with an overall accuracy greater than 90%. Water indices such as NDWI (Normalized Difference Water Index), continuum removal of water absorptions and average reflectance in the SWIR (shortwave infrared) were found to be the most important inputs for differentiating water hyacinth from other co-occuring species due to the high water content in its leaves. Water hyacinth maps from five years of data (2004 to 2008) showed that water hyacinth area significantly decreased between June of 2004 and 2005 and between June of 2007 and 2008. The decrease was larger in trapped areas (with restricted movement of water) compared to free-flowing channels. Three continuous weeks of frost in January of 2007 might have critically reduced water hyacinth cover across the Delta. There was no lasting effect of chemical control from one year to the next since no significant difference was found in water hyacinth cover in treated vs. untreated sites. The main objective of controlling water hyacinth -- to keep water channels clear for recreational and navigation use -- was not being met. Change detection analysis on the classification maps with six classes revealed that SAP (Submerged Aquatic Plants) was the most likely class to be colonized by water hyacinth and the most likely to spread into areas cleared of water hyacinth. The spread of water hyacinth into an empty niche (open water) and the return of an area after a decline in water hyacinth to open water were less common and more site dependant than with SAP. Water hyacinth interaction with other floating species was relatively limited, site dependant and more variable. The majority of water hyacinth cleared area was colonized by non-native species rather than returning to open water.

  15. Vs30 mapping at selected sites within the Greater Accra Metropolitan Area

    NASA Astrophysics Data System (ADS)

    Nortey, Grace; Armah, Thomas K.; Amponsah, Paulina

    2018-06-01

    A large part of Accra is underlain by a complex distribution of shallow soft soils. Within seismically active zones, these soils hold the most potential to significantly amplify seismic waves and cause severe damage, especially to structures sited on soils lacking sufficient stiffness. This paper presents preliminary site classification for the Greater Accra Metropolitan Area of Ghana (GAMA), using experimental data from two-dimensional (2-D) Multichannel Analysis of Surface Wave (MASW) technique. The dispersive characteristics of fundamental mode Rayleigh type surface waves were utilized for imaging the shallow subsurface layers (approx. up to 30 m depth) by estimating the 1D (depth) and 2D (depth and surface location) shear wave velocities at 5 selected sites. The average shear wave velocity for 30 m depth (Vs30), which is critical in evaluating the site response of the upper 30 m, was estimated and used for the preliminary site classification of the GAM area, as per NEHRP (National Earthquake Hazards Reduction Program). Based on the Vs30 values obtained in the study, two common site types C, and D corresponding to shallow (>6 m < 30 m) weathered rock and deep (up 30 m thick) stiff soils respectively, have been identified within the study area. Lower velocity profiles are inferred for the residual soils (sandy to silty clays), derived from the Accraian Formation that lies mainly within Accra central. Stiffer soil sites lie to the north of Accra, and to the west near Nyanyano. The seismic response characteristics over the residual soils in the GAMA have become apparent using the MASW technique. An extensive site effect map and a more robust probabilistic seismic hazard analysis can now be efficiently built for the metropolis, by considering the site classes and design parameters obtained from this study.

  16. Environmental setting, water budget, and stream assessment for the Broad Run watershed, Chester County, Pennsylvania

    USGS Publications Warehouse

    Cinotto, Peter J.; Reif, Andrew G.; Olson, Leif E.

    2005-01-01

    The Broad Run watershed lies almost entirely in West Bradford Township, Chester County, Pa., and drains 7.08 square miles to the West Branch Brandywine Creek. Because of the potential effect of encroaching development and other stresses on the Broad Run watershed, West Bradford Township, the Chester County Water Resources Authority, and the Chester County Health Department entered into a cooperative study with the U.S. Geological Survey to complete an annual water budget and stream assessment of overall conditions. The annual water budget quantified the basic parameters of the hydrologic cycle for the climatic conditions present from April 1, 2003, to March 31, 2004. These water-budget data identified immediate needs and (or) deficits that were present within the hydrologic cycle during that period, if present; however, an annual water budget encompassing a single year does not identify long-term trends. The stream assessment was conducted in two parts and assessed the overall condition of the watershed, an overall assessment of the fluvial-geomorphic conditions within the watershed and an overall assessment of the stream-quality conditions. The data collected will document present (2004) conditions and identify potential vulnerabilities to future disturbances. For the annual period from April 1, 2003, to March 31, 2004, determination of an annual water budget indicated that of the 67.8 inches of precipitation that fell on the Broad Run watershed, 38.8 inches drained by way of streamflow to the West Branch Brandywine Creek. Of this 38.8 inches of streamflow, local-minimum hydrograph separation techniques determined that 7.30 inches originated from direct runoff and 31.5 inches originated from base flow. The remaining precipitation went into ground-water storage (1.71 inches) and was lost to evapotranspiration (27.3 inches). Ground-water recharge for this period-35.2 inches-was based on these values and an estimated ground-water evapotranspiration rate of 2 inches. Assessment of fluvial-geomorphic conditions included large-scale mapping of stream classes within the Broad Run watershed and in-depth study of three representative stream reaches also within the Broad Run watershed. Based on the total distance of all stream reaches classified within the Broad Run watershed, 61 percent were classified as C-class, 14 percent as E-class, 13 percent as B-class, 5 percent as F-class, 4 percent as undifferentiated B- and F-class, 2 percent as G-class, and less than 1 percent as A-class. The map of stream classes indicates that the Broad Run watershed currently has no large-scale areas of stream impairment and that, generally, the stream is not entrenched and the main branch of the Broad Run has an available, functioning flood plain. Smaller tributary streams, however, showed signs of localized entrenchment due to site-specific influences such as natural stream-channel evolution, localized channelization, localized contraction due to road and driveway crossings, and (or) increased localized runoff. For example, one small reach along a tributary channel was observed to become entrenched due to runoff originating from a new housing development. Entrenched stream reaches are merely located by large-scale mapping and require individual assessment to determine potential causes of entrenchment and (or) future restorative actions. Three in-depth geomorphic study sites showed that the Broad Run can currently be considered graded or in a state of dynamic equilibrium. The sites did, however, identify certain vulnerabilities to future changes within the watershed. These vulnerabilities included disruption of the present sediment supply, including both increases and (or) reductions in the current sediment loads within the Broad Run; increases in both magnitude and duration of storm-water runoff; encroachment of development onto present flood-plain areas, and (or) alterations to riparian zones. Assessment of stream-quality conditions includ

  17. See Also:physica status solidi (a)physica status solidi (c)Copyright © 2004 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim

  18. Get Sample Copy
  19. Recommend to Your Librarian
  20. E-MailPrint
  1. Mapping soil texture classes and optimization of the result by accuracy assessment

    NASA Astrophysics Data System (ADS)

    Laborczi, Annamária; Takács, Katalin; Bakacsi, Zsófia; Szabó, József; Pásztor, László

    2014-05-01

    There are increasing demands nowadays on spatial soil information in order to support environmental related and land use management decisions. The GlobalSoilMap.net (GSM) project aims to make a new digital soil map of the world using state-of-the-art and emerging technologies for soil mapping and predicting soil properties at fine resolution. Sand, silt and clay are among the mandatory GSM soil properties. Furthermore, soil texture class information is input data of significant agro-meteorological and hydrological models. Our present work aims to compare and evaluate different digital soil mapping methods and variables for producing the most accurate spatial prediction of texture classes in Hungary. In addition to the Hungarian Soil Information and Monitoring System as our basic data, digital elevation model and its derived components, geological database, and physical property maps of the Digital Kreybig Soil Information System have been applied as auxiliary elements. Two approaches have been applied for the mapping process. At first the sand, silt and clay rasters have been computed independently using regression kriging (RK). From these rasters, according to the USDA categories, we have compiled the texture class map. Different combinations of reference and training soil data and auxiliary covariables have resulted several different maps. However, these results consequentially include the uncertainty factor of the three kriged rasters. Therefore we have suited data mining methods as the other approach of digital soil mapping. By working out of classification trees and random forests we have got directly the texture class maps. In this way the various results can be compared to the RK maps. The performance of the different methods and data has been examined by testing the accuracy of the geostatistically computed and the directly classified results. We have used the GSM methodology to assess the most predictive and accurate way for getting the best among the several result maps. Acknowledgement: Our work was supported by the Hungarian National Scientific Research Foundation (OTKA, Grant No. K105167).

  2. Mapping Vegetation Structure in Kakadu National Park: An AIRSAR and GIS Application in Conservation

    NASA Technical Reports Server (NTRS)

    Imhoff, Marc L.; Sisk, Thomas D.; Hampton, Haydee; Milne, Anthony K.

    1999-01-01

    Airborne Synthetic Aperture Radar (AIRSAR) data were used to map vegetation structure in Kakadu National Park Australia as part of the PACRIM project. SAR data were co-registered with Landsat TM, aerial photos, and map data in a geographic information system for a small test area consisting of mangrove, floodplain grasslands, lowland tropical evergreen forest and upland mixed deciduous and evergreen tropical forest near the South Alligator River. Landsat (Thematic Mapper) TM very clearly showed the floristic composition and burn scars from the previous years fires and the AIRSAR data provided a profile of vegetation structure. Extensive field data on vegetation species composition and structure were collected across a series of transects in cooperation with a survey of avifauna in an effort to link the habitat edge structure with bird species responses. A test site was found that contained two types of habitat edges: 1) A structure specific edge - characterized by the appearance of a very strong structural change in the forest canopy occurring in the absence of a substantial turnover in floristics. 2) Floristic edge - a sharp transition in vegetation genetic composition with a mixed set of structural changes. Specific polarization combinations were selected that were highly correlated to a set of desired structural parameters found in the field data. Classification routines were employed to group radar pixels into 3 structural classes based on: the Surface Area to Volume ratio (SA/V) of the stems, the SA/V of the branches, and the leaf area index of the canopy. Separate canopy structure maps were then entered into the GIS and bird responses were observed relative to the classes and their boundaries. Follow-on work will consist of extending this approach to neighboring areas, generating structure maps, predicting bird responses across the edges, and make accuracy assessments.

  3. Fixed point theorems for generalized α -β-weakly contraction mappings in metric spaces and applications.

    PubMed

    Latif, Abdul; Mongkolkeha, Chirasak; Sintunavarat, Wutiphol

    2014-01-01

    We extend the notion of generalized weakly contraction mappings due to Choudhury et al. (2011) to generalized α-β-weakly contraction mappings. We show with examples that our new class of mappings is a real generalization of several known classes of mappings. We also establish fixed point results for such mappings in metric spaces. Applying our new results, we obtain fixed point results on ordinary metric spaces, metric spaces endowed with an arbitrary binary relation, and metric spaces endowed with graph.

  4. New results from the MRO/CRISM investigation

    NASA Astrophysics Data System (ADS)

    Murchie, Scott L.; Mustard, John; Arvidson, Raymond; Bishop, Janice; Clancy, R. Todd; Ehlmann, Bethany; Skok, J. R.; Wray, James; Lichtenberg, Kimberly; Andrews-Hanna, Jeffrey

    The CRISM visible-infrared imaging spectrometer on the MRO spacecraft has completed over 1.7 Mars years of its investigation. During that time CRISM has acquired over 11,500 hyper-spectral observations at 20-40 m/pixel (typically coordinated with 30 cm/pixel HiRISE images and 6 m/pixel CTX images), 12,500 globally distributed measurements of aerosol opacity and trace gas abundances, and 200 m/pixel mapping of 70% of Mars at 72 wavelengths. Ma-jor results from the first Mars year of operation include characterization of the composition, stratigraphy, and geologic setting of ten distinct classes of deposits containing minerals diagnos-tic of past aqueous processes, and monitoring of spatial and seasonal variations in atmospheric properties during the year of a global dust event. New results during the second Mars year of operations include: (a) discovery of Noachian-aged hydrothermal alteration of the crust, includ-ing formation of serpentine; (b) Hesperian-aged hydrothermal deposits, for example in Syrtis Major; (c) more complete mapping of late Noachian-to Hesperian-aged sulfate-bearing layered deposits, revealing correlation with expected locations of groundwater discharge; (d) detailed mineral mapping of candidate MSL landing sites, and characterization of seasonal change at the Phoenix site; and (e) limb profiles of gases and aerosols showing their distribution at vertical scales <1 km.

  5. Mapping Environmental Contaminants at Ray Mine, AZ

    NASA Technical Reports Server (NTRS)

    McCubbin, Ian; Lang, Harold

    2000-01-01

    Airborne Visible and InfraRed Imaging Spectrometer (AVIRIS) data was collected over Ray Mine as part of a demonstration project for the Environmental Protection Agency (EPA) through the Advanced Measurement Initiative (AMI). The overall goal of AMI is to accelerate adoption and application of advanced measurement technologies for cost effective environmental monitoring. The site was selected to demonstrate the benefit to EPA in using advanced remote sensing technologies for the detection of environmental contaminants due to the mineral extraction industry. The role of the Jet Propulsion Laboratory in this pilot study is to provide data as well as performing calibration, data analysis, and validation of the AVIRIS results. EPA is also interested in developing protocols that use commercial software to perform such work on other high priority EPA sites. Reflectance retrieval was performed using outputs generated by the MODTRAN radiative transfer model and field spectra collected for the purpose of calibration. We are presenting advanced applications of the ENVI software package using n-Dimensional Partial Unmixing to identify image-derived endmembers that best match target materials reference spectra from multiple spectral libraries. Upon identification of the image endmembers the Mixture Tuned Match Filter algorithm was applied to map the endmembers within each scene. Using this technique it was possible to map four different mineral classes that are associated with mine generated acid waste.

  6. Interoperability of Medication Classification Systems: Lessons Learned Mapping Established Pharmacologic Classes (EPCs) to SNOMED CT

    PubMed Central

    Nelson, Scott D; Parker, Jaqui; Lario, Robert; Winnenburg, Rainer; Erlbaum, Mark S.; Lincoln, Michael J.; Bodenreider, Olivier

    2018-01-01

    Interoperability among medication classification systems is known to be limited. We investigated the mapping of the Established Pharmacologic Classes (EPCs) to SNOMED CT. We compared lexical and instance-based methods to an expert-reviewed reference standard to evaluate contributions of these methods. Of the 543 EPCs, 284 had an equivalent SNOMED CT class, 205 were more specific, and 54 could not be mapped. Precision, recall, and F1 score were 0.416, 0.620, and 0.498 for lexical mapping and 0.616, 0.504, and 0.554 for instance-based mapping. Each automatic method has strengths, weaknesses, and unique contributions in mapping between medication classification systems. In our experience, it was beneficial to consider the mapping provided by both automated methods for identifying potential matches, gaps, inconsistencies, and opportunities for quality improvement between classifications. However, manual review by subject matter experts is still needed to select the most relevant mappings. PMID:29295234

  7. Mapped Plot Patch Size Estimates

    Treesearch

    Paul C. Van Deusen

    2005-01-01

    This paper demonstrates that the mapped plot design is relatively easy to analyze and describes existing formulas for mean and variance estimators. New methods are developed for using mapped plots to estimate average patch size of condition classes. The patch size estimators require assumptions about the shape of the condition class, limiting their utility. They may...

  8. Characterization of cDNAs and genomic DNAs for human threonyl- and cysteinyl-tRNA synthetases

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Cruzen, M.E.

    1993-01-01

    Techniques of molecular biology were used to clone, sequence and map two human aminoacyl-tRNA synthetase (aaRS) cDNAs: threonyl-tRNA synthetase (ThrRS) a class II enzyme and cysteinyl-tRNA synthetase (CysRS) a class I enzyme. The predicted protein sequence of human ThrRS is highly homologous to that of lower eukaryotic and prokaryotic ThRSs, particularly in the regions containing the three structural motifs common to all class II synthetases. Signature regions 1 and 2, which characterize the class IIa subgroup (SerRS, ThrRS and HisRS) are highly conserved from bacteria to human. Structural predictions for human ThrRS based on the known structure of the closelymore » related SerRS from E.coli implicate strongly conserved residues in the signature sequences to be important in substrate binding. The amino terminal 100 residues of the deduced amino acid sequence of ThrRS shares structural similarity to SerRS consistent with forming an antiparallel helix implicated in tRNA binding. The 5' untranslated sequence of the human ThrRS gene shares short stretches of common sequence with the gene for hamster HisRS including a binding site for the promoter specific transcription factor sp-1. The deduced amino acid sequence of human CysRS has a high degree of sequence identify to E. coli CysRS. Human CysRS possesses the classic characteristics of a class I synthetase and is most closely related to the MetRS subgroup. The amino terminal half of human CysRS can be modeled as a nucleotide binding fold and shares significant sequence and structural similarity to the other enzymes in this subgroup. The CysRS structural gene (CARS) was mapped to human chromosome 11p15.5 by fluorescent in situ hybridization. CARS is the first aaRS gene to be mapped to chromosome 11. The steady state of both CysRS and ThrRs mRNA were quantitated in several human tissues. Message levels for these enzymes appear to be subjected to differential regulation in different cell types.« less

  9. Structural insight into the activation of a class B G-protein-coupled receptor by peptide hormones in live human cells

    PubMed Central

    Seidel, Lisa; Zarzycka, Barbara; Zaidi, Saheem A; Katritch, Vsevolod; Coin, Irene

    2017-01-01

    The activation mechanism of class B G-protein-coupled receptors (GPCRs) remains largely unknown. To characterize conformational changes induced by peptide hormones, we investigated interactions of the class B corticotropin-releasing factor receptor type 1 (CRF1R) with two peptide agonists and three peptide antagonists obtained by N-truncation of the agonists. Surface mapping with genetically encoded photo-crosslinkers and pair-wise crosslinking revealed distinct footprints of agonists and antagonists on the transmembrane domain (TMD) of CRF1R and identified numerous ligand-receptor contact sites, directly from the intact receptor in live human cells. The data enabled generating atomistic models of CRF- and CRF(12-41)-bound CRF1R, further explored by molecular dynamics simulations. We show that bound agonist and antagonist adopt different folds and stabilize distinct TMD conformations, which involves bending of helices VI and VII around flexible glycine hinges. Conservation of these glycine hinges among all class B GPCRs suggests their general role in activation of these receptors. DOI: http://dx.doi.org/10.7554/eLife.27711.001 PMID:28771403

  10. MBARI Mapping AUV: A High-Resolution Deep Ocean Seafloor Mapping Capability

    NASA Astrophysics Data System (ADS)

    Caress, D. W.; Kirkwood, W. J.; Thomas, H.; McEwen, R.; Henthorn, R.; McGill, P.; Thompson, D.; Sibenac, M.; Jensen, S.; Shane, F.; Hamilton, A.

    2005-05-01

    The Monterey Bay Aquarium Research Institute (MBARI) is developing an autonomous seafloor mapping capability for deep ocean science applications. The MBARI Mapping AUV is a 0.53 m (21 in) diameter, 5.1 m (16.7 ft) long, Dorado-class vehicle designed to carry four mapping sonars. The primary sensor is a 200 kHz multibeam sonar producing swath bathymetry and sidescan. In addition, the vehicle carries 100 kHz and 410 kHz chirp sidescan sonars, and a 2-16 kHz sweep chirp subbottom profiler. Navigation and attitude data are obtained from an inertial navigation system (INS) incorporating a ring laser gyro and a 300 kHz Doppler velocity log (DVL). The vehicle also includes acoustic modem, ultra-short baseline navigation, and long-baseline navigation systems. The Mapping AUV is powered by 6 kWhr of Li-polymer batteries, providing expected mission duration of 12 hours at a typical speed of 1.5 m/s. All components of the vehicle are rated to 6000 m depth, allowing MBARI to conduct high-resolution mapping of the deep-ocean seafloor. The sonar package is also be mountable on ROV Ventana, allowing surveys at altitudes less than 20 m at topographically challenging sites. The vehicle was assembled and extensively tested during 2004; this year we are commencing operations for MBARI science projects while continuing the process of testing and integrating the complete suite of sensors and systems. MBARI is beginning to use this capability to observe the changing morphology of dynamic systems such as submarine canyons and active slumps, to map deep-water benthic habitats at resolutions comparable to ROV and submersible observations, to provide basemaps for ROV dives, and to provide high resolution bathymetry and subbottom profiles as part of a variety of projects requiring knowledge of the seafloor. We will present initial results from surveys in and around Monterey Canyon, including high resolution repeat surveys of four sites along the canyon axis.

  11. Area distortion under certain classes of quasiconformal mappings.

    PubMed

    Hernández-Montes, Alfonso; Reséndis O, Lino F

    2017-01-01

    In this paper we study the hyperbolic and Euclidean area distortion of measurable sets under some classes of K -quasiconformal mappings from the upper half-plane and the unit disk onto themselves, respectively.

  12. Acoustic and satellite remote sensing of shallow nearshore marine habitats in the Gwaii Haanas National Marine Conservation Area

    NASA Astrophysics Data System (ADS)

    Reshitnyk, Luba Yvanka

    The ability to map nearshore habitat (i.e. submerged aquatic vegetation) is an integral component of marine conservation. The main goal of this thesis was to examine the ability of high resolution, multispectral satellite imagery and a single-beam acoustic ground discrimination system to map the location of marine habitats in Bag Harbour, found in the Gwaii Haanas National Marine Conservation Area Reserve. To meet this goal, two objectives were addressed: (1) Using the QTC View V sing-beam acoustic ground discrimination system, identify which frequency (50 kHz or 200 kHz) is best suited for mapping marine habitat; (2) evaluate the ability to map nearshore marine habitat using WorldView-2 high resolution, multispectral satellite imagery and compare the results of marine habitat maps derived from the acoustic and satellite datasets. Ground-truth data for both acoustic and satellite data were collected via towed underwater video camera on June 3rd and 4th, 2012. Acoustic data (50 and 200 kHz) were collected on June 23rd and 24 th, 2012, respectively. The results of this study are organized into two papers. The first paper focuses on objective 1 where the QTC View V single-beam acoustic ground discrimination system was used to map nearshore habitat at a site within the Gwaii Haanas National Marine Conservation Area using two survey frequencies -- 50 kHz and 200 kHz. The results show that the 200 kHz data outperformed the 50 kHz data set in both thematic and spatial accuracy. The 200 kHz dataset was able to identify two species of submerged aquatic vegetation, eelgrass ( Zostera marina) and a red algae (Chondrocanthus exasperatus ) while the 50 kHz dataset was only able to detect the distribution of eelgrass. The best overall accuracy achieved with the 200 kHz dataset was 86% for a habitat map with three classes (dense eelgrass, dense red algae and unvegetated substrate) compared to the 50 kHz habitat classification with two classes (dense eelgrass and unvegetated substrate) that had an overall accuracy of 70%. Neither dataset was capable if discerning the distribution of green algae (Ulva spp.) or brown algae (Fucus spp.), also present at the site. The second paper examines the benthic habitat maps created using WorldView-2 satellite imagery and the QTC View V single-beam acoustic ground discrimination system (AGDS) at 200 kHz (objective 2). Optical and acoustic remote sensing technologies both present unique capabilities of mapping nearshore habitat. Acoustic systems are able to map habitat in subtidal regions outside of the range of optical sensors while optical sensors such as WorldView-2 provide higher spatial and spectral resolution. The results of this study found that the WorldView-2 achieved the highest overall accuracy (75%) for mapping shallow (<3 m) benthic classes (green algae, brown algae, eelgrass and unvegetated substrate). The 200 kHz data were found to perform best in deeper (>3 m) regions and were able to detect the distribution of eelgrass, red algae and unvegetated substrate. A final habitat map was produced composed of these outputs to create a final, comprehensive habitat map of Bag Harbour. These results highlight the benefits and limitations of each remote sensing technology from a conservation management perspective. The main benefits of the WorldView-2 imagery stem from the high resolution (2 x 2 m) pixel resolution, with a single image covering many kilometers of coastline, and ability to discern habitats in the intertidal region that were undetectable by AGDS. However, the main limitation of this technology is the ability to acquire imagery under ideal conditions (low tide and calm seas). In contrast, the QTC View V system requires more hours spent collecting acoustic data in the field, is limited in the number of habitats it is able to detect and creates maps based on interpolated point data (compared to the continuous raster data of the WorldView-2 imagery). If, however, the objectives of the conservation management to create high resolution benthic habitat maps of subtidal habitats (e.g. eelgrass and benthic red algae) at a handful of sites (in contrast to continuous coastal coverage), the QTC View V system is more suitable. Whichever system is used ground-truth data are required to train and validate each dataset.

  13. A modern soil carbon stock baseline for the conterminous United States

    NASA Astrophysics Data System (ADS)

    Loecke, T.; Wills, S. A.; Teachman, G.; Sequeira, C.; West, L.; Wijewardane, N.; Ge, Y.

    2016-12-01

    The Rapid Carbon Assessment Project was undertaken to ascertain the soil carbon stocks across the conterminous US at one point in time. Sample locations were chosen randomly from the NRI (National Resource Inventory) sampling framework and cover all areas in CONUS with SSURGO certified maps as of Dec 2010. The project was regionalized into 17 areas for logistical reasons. Within each region, soils were grouped by official series description properties. Sites were selected by soil groups and land use/cover as indicated by NRI or NLCD (USGS National Land Cover Dataset) class so that more extensive soils groups and/or land use/covers received more points and less extensive fewer points (with a minimum of 5 sites). Each region had 375 - 400 sites, for a total of approximately 6,400 sites. At each site, basic information about land use, vegetation and management were collected as appropriate and available. Samples were collected from 5 pedons (a central and 4 satellites) per site to a depth of 1m, at 0 - 5cm and by genetic horizon. A volumetric sample was collected for horizons above 50 cm to determine bulk density. For horizons below 50cm (or when a volumetric sample could not be obtained) bulk density was modeled from morphological information. All samples were air dried and crushed to <2mm. The central pedon was analyzed for total and organic carbon at the Kellogg Soil Science Laboratory in Lincoln, NE. A visible near-infrared (VNIR) spectrophotometer was used to predict organic and inorganic carbon contents for all satellites samples. A Hierarchical Bayesian statistical approach was used to estimate C stocks, concentrations, and uncertainty for each sampling level (i.e., CONUS, region, soil group, landuse and site). Carbon concentration and stocks were summarized by surface horizon and depth increments for sites, soil groups, and land use/groups and mapped by linking the values to a raster of SSURGO (Jan 2012) that includes map unit and NLCD classification. This modern soil C stock baseline data set will be useful for many application in climate science and biogeochemistry.

  14. Unmanned Aerial Vehicle (UAV) Data Acquisition for Archaeological Site Identification and Mapping

    NASA Astrophysics Data System (ADS)

    Handayani, W.; Ayuningtyas, E. A.; Candra R, F. S.; Arif S, B.; Argadyanto, B.

    2017-12-01

    Archaeological sites as part of human history and located around community are important to be preserved for connecting historical information from generation to generation. Mapping of archaeological sites can be done as one of preservation efforts. Yogyakarta has several archaeological sites such as Pleret Palace, the former royal palace of Mataram Islam in the 16th Century. Data limitations and the difficulty of reconstructing the site sketches into a map become obstacles in archaeological sites mapping. Unmanned Aerial Vehicle (UAV) can be an alternative of high-resolution spatial data acquisition for detail mapping, including archaeological sites mapping. This study aims to see how far the UAV acquisition results can be used for Archaeological Site mapping in Pleret Palace. Data acquisition using UAV generated to mosaic orthophoto, Digital Surface Model (DSM), and Digital Terrain Model (DTM). Archaeological sites identified using DTM and matched with site sketch made by Cultural Agency. From these data, it can be recognized some relics form, such as palace fortress, moats and canals, and also dikes of Segarayasa. This research is expected to be a reference in archaeological site mapping using detailed spatial data, especially UAV. Furthermore, it can be obtained archaeological site map close to real condition; as well as archaeological sites preservation in Indonesia.

  15. The ERTS-1 investigation (ER-600). Volume 3: ERTS-1 forest analysis

    NASA Technical Reports Server (NTRS)

    Erb, R. B.

    1974-01-01

    The Forest Analysis Team of the Lyndon B. Johnson Space Center Earth Observations Division conducted a year's investigation of LANDSAT 1 multispectral data to determine the size of forest features that could be detected and to determine the suitability for making forest classification maps. The Sam Houston National Forest of Texas was used as the test site. Using conventional interpretation and computer aided techniques, the team was able to differentiate up to 14 classes of forest features to an accuracy ranging between 55 and 84 percent.

  16. A Vegetation Database for the Colorado River Ecosystem from Glen Canyon Dam to the Western Boundary of Grand Canyon National Park, Arizona

    USGS Publications Warehouse

    Ralston, Barbara E.; Davis, Philip A.; Weber, Robert M.; Rundall, Jill M.

    2008-01-01

    A vegetation database of the riparian vegetation located within the Colorado River ecosystem (CRE), a subsection of the Colorado River between Glen Canyon Dam and the western boundary of Grand Canyon National Park, was constructed using four-band image mosaics acquired in May 2002. A digital line scanner was flown over the Colorado River corridor in Arizona by ISTAR Americas, using a Leica ADS-40 digital camera to acquire a digital surface model and four-band image mosaics (blue, green, red, and near-infrared) for vegetation mapping. The primary objective of this mapping project was to develop a digital inventory map of vegetation to enable patch- and landscape-scale change detection, and to establish randomized sampling points for ground surveys of terrestrial fauna (principally, but not exclusively, birds). The vegetation base map was constructed through a combination of ground surveys to identify vegetation classes, image processing, and automated supervised classification procedures. Analysis of the imagery and subsequent supervised classification involved multiple steps to evaluate band quality, band ratios, and vegetation texture and density. Identification of vegetation classes involved collection of cover data throughout the river corridor and subsequent analysis using two-way indicator species analysis (TWINSPAN). Vegetation was classified into six vegetation classes, following the National Vegetation Classification Standard, based on cover dominance. This analysis indicated that total area covered by all vegetation within the CRE was 3,346 ha. Considering the six vegetation classes, the sparse shrub (SS) class accounted for the greatest amount of vegetation (627 ha) followed by Pluchea (PLSE) and Tamarix (TARA) at 494 and 366 ha, respectively. The wetland (WTLD) and Prosopis-Acacia (PRGL) classes both had similar areal cover values (227 and 213 ha, respectively). Baccharis-Salix (BAXX) was the least represented at 94 ha. Accuracy assessment of the supervised classification determined that accuracies varied among vegetation classes from 90% to 49%. Causes for low accuracies were similar spectral signatures among vegetation classes. Fuzzy accuracy assessment improved classification accuracies such that Federal mapping standards of 80% accuracies for all classes were met. The scale used to quantify vegetation adequately meets the needs of the stakeholder group. Increasing the scale to meet the U.S. Geological Survey (USGS)-National Park Service (NPS)National Mapping Program's minimum mapping unit of 0.5 ha is unwarranted because this scale would reduce the resolution of some classes (e.g., seep willow/coyote willow would likely be combined with tamarisk). While this would undoubtedly improve classification accuracies, it would not provide the community-level information about vegetation change that would benefit stakeholders. The identification of vegetation classes should follow NPS mapping approaches to complement the national effort and should incorporate the alternative analysis for community identification that is being incorporated into newer NPS mapping efforts. National Vegetation Classification is followed in this report for association- to formation-level categories. Accuracies could be improved by including more environmental variables such as stage elevation in the classification process and incorporating object-based classification methods. Another approach that may address the heterogeneous species issue and classification is to use spectral mixing analysis to estimate the fractional cover of species within each pixel and better quantify the cover of individual species that compose a cover class. Varying flights to capture vegetation at different times of the year might also help separate some vegetation classes, though the cost may be prohibitive. Lastly, photointerpretation instead of automated mapping could be tried. Photointerpretation would likely not improve accuracies in this case, howev

  17. Assessing ecological departure from reference conditions with the Fire Regime Condition Class (FRCC) Mapping Tool

    Treesearch

    Stephen W. Barrett; Thomas DeMeo; Jeffrey L. Jones; J.D. Zeiler; Lee C. Hutter

    2006-01-01

    Knowledge of ecological departure from a range of reference conditions provides a critical context for managing sustainable ecosystems. Fire Regime Condition Class (FRCC) is a qualitative measure characterizing possible departure from historical fire regimes. The FRCC Mapping Tool was developed as an ArcMap extension utilizing the protocol identified by the Interagency...

  18. Mapping relative fire regime condition class for the Western United States

    Treesearch

    James P. Menakis; Melanie Miller; Thomas Thompson

    2004-01-01

    In 1999, a coarse-scale map of Fire Regime Condition Classes (FRCC) was developed for the conterminous United States (US) to help address contemporary fire management issues and to quantify changes in fuels from historical conditions. This map and its associated data have been incorporated into national policies (National Fire Plan, Forest Health Initiative) and...

  19. Development and validation of a method to estimate the potential wind erosion risk in Germany

    NASA Astrophysics Data System (ADS)

    Funk, Roger; Deumlich, Detlef; Völker, Lidia

    2017-04-01

    The introduction of the Cross Compliance (CC) regulations for soil protection resulted in the demand for the classification of the the wind erosion risk on agricultural areas in Germany nationwide. A spatial highly resolved method was needed based on uniform data sets and validation principles, which provides a fair and equivalent procedure for all affected farmers. A GIS-procedure was developed, which derives the site specific wind erosion risk from the main influencing factors: soil texture, wind velocity, wind direction and landscape structure following the German standard DIN 19706. The procedure enables different approaches in the Federal States and comparable classification results. Here, we present the approach of the Federal State of Brandenburg. In the first step a complete soil data map was composed in a grid size of 10 x 10 m. Data were taken from 1.) the Soil quality Appraisal (scale 1:10.000), 2.) the Medium-scale Soil Mapping (MMK, 1:25.000), 3.) extrapolating the MMK, 4.) new Soil quality Appraisal (new areas after coal-mining). Based on the texture and carbon content the wind erosion susceptibility was divided in 6 classes. This map was combined with data of the annual average wind velocity resulting in an increase of the risk classes for wind velocities > 5 ms-1 and a decrease for < 3 ms-1. The sheltering effect of landscape structure is regarded by allocating a height to each landscape element, corresponding to the described features in the digital "Biotope and Land Use Map". The "hill shade" procedure of ArcGIS was used to set virtual shadows behind the landscape elements for eight directions. The relative frequency of wind from each direction was used as a weighting factor and multiplied with the numerical values of the shadowed cells. Depending on the distance to the landscape element the shadowing effect was combined with the risk classes. The results show that the wind erosion risk is obviously reduced by integrating landscape structures into the risk assessment. After the renewed classification for the entire Federal State, about 60% of the area in the highest, and 40% in the medium risk classes changed into lower classes. The area of the highest potential risk class decreased from 40% to 17% in relation to the total area. A validation of this approach was made by data of the Digital Surface Model (DSM, first pulse) from laser scanning of an area of 144 km2 with a spatial resolution of 1 x 1 m. It could be shown that the allocated height values of the landscape elements were correct in 75% per cent, too low in 15% and too high in 11% off all cases. The current landscape element map of the Federal State of Brandenburg will be replaced, when the DSM is available for the entire area in the near future.

  20. Large Scale Crop Classification in Ukraine using Multi-temporal Landsat-8 Images with Missing Data

    NASA Astrophysics Data System (ADS)

    Kussul, N.; Skakun, S.; Shelestov, A.; Lavreniuk, M. S.

    2014-12-01

    At present, there are no globally available Earth observation (EO) derived products on crop maps. This issue is being addressed within the Sentinel-2 for Agriculture initiative where a number of test sites (including from JECAM) participate to provide coherent protocols and best practices for various global agriculture systems, and subsequently crop maps from Sentinel-2. One of the problems in dealing with optical images for large territories (more than 10,000 sq. km) is the presence of clouds and shadows that result in having missing values in data sets. In this abstract, a new approach to classification of multi-temporal optical satellite imagery with missing data due to clouds and shadows is proposed. First, self-organizing Kohonen maps (SOMs) are used to restore missing pixel values in a time series of satellite imagery. SOMs are trained for each spectral band separately using non-missing values. Missing values are restored through a special procedure that substitutes input sample's missing components with neuron's weight coefficients. After missing data restoration, a supervised classification is performed for multi-temporal satellite images. For this, an ensemble of neural networks, in particular multilayer perceptrons (MLPs), is proposed. Ensembling of neural networks is done by the technique of average committee, i.e. to calculate the average class probability over classifiers and select the class with the highest average posterior probability for the given input sample. The proposed approach is applied for large scale crop classification using multi temporal Landsat-8 images for the JECAM test site in Ukraine [1-2]. It is shown that ensemble of MLPs provides better performance than a single neural network in terms of overall classification accuracy and kappa coefficient. The obtained classification map is also validated through estimated crop and forest areas and comparison to official statistics. 1. A.Yu. Shelestov et al., "Geospatial information system for agricultural monitoring," Cybernetics Syst. Anal., vol. 49, no. 1, pp. 124-132, 2013. 2. J. Gallego et al., "Efficiency Assessment of Different Approaches to Crop Classification Based on Satellite and Ground Observations," J. Autom. Inform. Scie., vol. 44, no. 5, pp. 67-80, 2012.

  1. Evolutionary games with self-questioning adaptive mechanism and the Ising model

    NASA Astrophysics Data System (ADS)

    Liu, J.; Xu, C.; Hui, P. M.

    2017-09-01

    A class of evolutionary games using a self-questioning strategy switching mechanism played in a population of connected agents is shown to behave as an Ising model Hamiltonian of spins connected in the same way. The payoff parameters combine to give the coupling between spins and an external magnetic field. The mapping covers the prisoner's dilemma, snowdrift and stag hunt games in structured populations. A well-mixed system is used to illustrate the equivalence. In a chain of agents/spins, the mapping to Ising model leads to an exact solution to the games effortlessly. The accuracy of standard approximations on the games can then be quantified. The site approximation is found to show varied accuracies depending on the payoff parameters, and the link approximation is shown to give the exact result in a chain but not in a closed form. The mapping established here connects two research areas, with each having much to offer to the other.

  2. The application of remote sensing technology to the solution of problems in the management of resources in Indiana

    NASA Technical Reports Server (NTRS)

    Weismiller, R. A. (Principal Investigator); Mroczynski, R. P.

    1977-01-01

    The author has identified the following significant results. The Lydich quadrangle area was successfully classified into seven cover types: (1) trees, (2) poorly drained soil and water, (3) pasture land, (4) well drained brown soil, (5) moderately well drained dark brown soil, (6) moderately drained soil, and (7) medium to poorly drained soil. Measurements of the percent of mapping unit represented by a named soil series range from 44 to 55 percent. If the class identified as vegetation is combined with the named unit, the range increases from 54 to 64 percent. The Xenia mapping unit was the only unit represented by less than 50 percent of the named unit. Results from the intensive tent moth study in Owensburg and Williams were interpreted from 70 mm color infrared and visually transferred to maps. A correction factor was necessary, because the date the sample photography was taken was a month later than the intensive site data (CF x acres defoliated in each level = expanded defoliated acres).

  3. DNA sequence analysis of simian virus 40 mutants with deletions mapping in the leader region of the late viral mRNA's: mutants with deletions similar in size and position exhibit varied phenotypes.

    PubMed

    Barkan, A; Mertz, J E

    1981-02-01

    The nucleotide sequences of 10 viable yet partially defective deletion mutants of simian virus 40 were determined. The deletions mapped within, and, in many cases, 5' to, the predominant leader sequence of the late viral mRNA's. They ranged from 74 to 187 nucleotide pairs in length. Six of the mutants had lost the sequence that corresponds to the "cap" site (5' terminus) of the most abundant class of 16S mRNA's. One of these mutants had a deletion that extended 103 nucleotide pairs into the region preceding this primary cap site and, therefore, was missing many secondary cap sites as well. A seventh mutant lacked the entire major 16S leader sequence except for the first six nucleotides at its 5' end and the last nine at its 3' end. Although these mutants differed in the size and position of their deletions, we were unable to discover any simple correlations between their growth characteristics and their DNA sequences. This finding indicates that the secondary structures of the RNA transcripts may play a more important role than the exact nucleotide sequence of the RNAs in determining how they function within the cell.

  4. Nesting habitat of the Tule Greater White-fronted Goose Anser albifrons elgasi

    USGS Publications Warehouse

    Densmore, R.V.; Ely, Craig R.; Bollinger, K.S.; Kratzer, S.; Udevitz, M.S.; Fehringer, D.J.; Rothe, T.C.

    2006-01-01

    This paper presents the first information on the availability and use of nesting habitat by the rare Tule Greater White-fronted Goose Anser albifrons elgasi. The breeding range was sampled by marking geese with radio transmitters on wintering and moulting areas, and tracking them to nest sites in Alaska. Nesting habitat was described at the scales of ecoregion, wetland ecosystem (National Wetlands Inventory (NWI) maps), vegetation type within wetland (Alaska Vegetation Classification (AVC) maps based on satellite imagery), and nest site. Tule Greater White-fronted Goose nests were located in boreal forest wetlands in the upper Cook Inlet Basin ecoregion. Nesting Tule Greater White-fronted Geese selected NWT Palustrine Seasonally Flooded wetlands and used NWI Palustrine Saturated wetlands in proportion to availability. Within these wetlands, Tule Greater White-fronted Geese used Needleleaf Forest, Low Shrub and Herbaceous (mostly graminoid) AVC classes for nest sites in proportion to availability Most (93%) Tule Greater White-fronted Geese nested > 75 m from open water ponds or lakes, and many nested in wetlands with little or no open water. Tule Greater White-fronted Geese nest only in a small breeding area near the most human-impacted area of the state, and continued development may limit the use of suitable nesting habitat.

  5. [Application of mind map in teaching of medical parasitology].

    PubMed

    Zhou, Hong-Chang; Shao, Sheng-Wen; Xu, Bo-Ying

    2012-12-30

    To improve the teaching quality of medical parasitology, mind map, a simple and effective learning method, was introduced. The mind map of each chapter was drawn by teacher and distributed to students before the class. It was helpful for teacher to straighten out the teaching idea, and for students to grasp the important learning points, perfect the class notes and improve learning efficiency. The divergent characteristics of mind map can also help to develop the students' innovation ability.

  6. Analysis of spatial distribution of land cover maps accuracy

    NASA Astrophysics Data System (ADS)

    Khatami, R.; Mountrakis, G.; Stehman, S. V.

    2017-12-01

    Land cover maps have become one of the most important products of remote sensing science. However, classification errors will exist in any classified map and affect the reliability of subsequent map usage. Moreover, classification accuracy often varies over different regions of a classified map. These variations of accuracy will affect the reliability of subsequent analyses of different regions based on the classified maps. The traditional approach of map accuracy assessment based on an error matrix does not capture the spatial variation in classification accuracy. Here, per-pixel accuracy prediction methods are proposed based on interpolating accuracy values from a test sample to produce wall-to-wall accuracy maps. Different accuracy prediction methods were developed based on four factors: predictive domain (spatial versus spectral), interpolation function (constant, linear, Gaussian, and logistic), incorporation of class information (interpolating each class separately versus grouping them together), and sample size. Incorporation of spectral domain as explanatory feature spaces of classification accuracy interpolation was done for the first time in this research. Performance of the prediction methods was evaluated using 26 test blocks, with 10 km × 10 km dimensions, dispersed throughout the United States. The performance of the predictions was evaluated using the area under the curve (AUC) of the receiver operating characteristic. Relative to existing accuracy prediction methods, our proposed methods resulted in improvements of AUC of 0.15 or greater. Evaluation of the four factors comprising the accuracy prediction methods demonstrated that: i) interpolations should be done separately for each class instead of grouping all classes together; ii) if an all-classes approach is used, the spectral domain will result in substantially greater AUC than the spatial domain; iii) for the smaller sample size and per-class predictions, the spectral and spatial domain yielded similar AUC; iv) for the larger sample size (i.e., very dense spatial sample) and per-class predictions, the spatial domain yielded larger AUC; v) increasing the sample size improved accuracy predictions with a greater benefit accruing to the spatial domain; and vi) the function used for interpolation had the smallest effect on AUC.

  7. QoS mapping algorithm for ETE QoS provisioning

    NASA Astrophysics Data System (ADS)

    Wu, Jian J.; Foster, Gerry

    2002-08-01

    End-to-End (ETE) Quality of Service (QoS) is critical for next generation wireless multimedia communication systems. To meet the ETE QoS requirements, Universal Mobile Telecommunication System (UMTS) requires not only meeting the 3GPP QoS requirements [1-2] but also mapping external network QoS classes to UMTS QoS classes. There are four Quality of Services (QoS) classes in UMTS; they are Conversational, Streaming, Interactive and Background. There are eight QoS classes for LAN in IEEE 802.1 (one reserved). ATM has four QoS categories. They are Constant Bit Rate (CBR) - highest priority, short queue for strict Cell Delay Variation (CDV), Variable Bit Rate (VBR) - second highest priority, short queues for real time, longer queues for non-real time, Guaranteed Frame Rate (GFR)/ Unspecified Bit Rate (UBR) with Minimum Desired Cell Rate (MDCR) - intermediate priority, dependent on service provider UBR/ Available Bit Rate (ABR) - lowest priority, long queues, large delay variation. DiffServ (DS) has six-bit DS codepoint (DSCP) available to determine the datagram's priority relative to other datagrams and therefore, up to 64 QoS classes are available from the IPv4 and IPv6 DSCP. Different organisations have tried to solve the QoS issues from their own perspective. However, none of them has a full picture for end-to-end QoS classes and how to map them among all QoS classes. Therefore, a universal QoS needs to be created and a new set of QoS classes to enable end-to-end (ETE) QoS provisioning is required. In this paper, a new set of ETE QoS classes is proposed and a mappings algorithm for different QoS classes that are proposed by different organisations is given. With our proposal, ETE QoS mapping and control can be implemented.

  8. Investigating the Capability of IRS-P6-LISS IV Satellite Image for Pistachio Forests Density Mapping (case Study: Northeast of Iran)

    NASA Astrophysics Data System (ADS)

    Hoseini, F.; Darvishsefat, A. A.; Zargham, N.

    2012-07-01

    In order to investigate the capability of satellite images for Pistachio forests density mapping, IRS-P6-LISS IV data were analyzed in an area of 500 ha in Iran. After geometric correction, suitable training areas were determined based on fieldwork. Suitable spectral transformations like NDVI, PVI and PCA were performed. A ground truth map included of 34 plots (each plot 1 ha) were prepared. Hard and soft supervised classifications were performed with 5 density classes (0-5%, 5-10%, 10-15%, 15-20% and > 20%). Because of low separability of classes, some classes were merged and classifications were repeated with 3 classes. Finally, the highest overall accuracy and kappa coefficient of 70% and 0.44, respectively, were obtained with three classes (0-5%, 5-20%, and > 20%) by fuzzy classifier. Considering the low kappa value obtained, it could be concluded that the result of the classification was not desirable. Therefore, this approach is not appropriate for operational mapping of these valuable Pistachio forests.

  9. Use of low-altitude aerial photography to identify submersed aquatic macrophytes

    USGS Publications Warehouse

    Schloesser, Donald W.; Manny, Bruce A.; Brown, Charles L.; Jaworski, Eugene

    1987-01-01

    The feasibility of using low-altitude aerial photography to identify beds of submersed macrophytes is demonstrated. True color aerial photos and collateral ground survey information for submersed aquatic macrophyte beds at 10 sites in the St.Clair-Detroit River system were obtained in September 1978. Using the photos and collateral ground survey information, a dichotomous key was developed for the identification of six classes - beds of five genera of macrophytes and one substrate type. A test was prepared to determine how accurately photo interpreters could identify the six classes. The test required an interpreter to examine an unlabeled, outlined area on photographs and identify it using the key. Six interpreters were tested. One pair of interpreters was trained in the interpretation of a variety of aerial photos, a second pair had field experience in the collection and identification of submersed macrophytes in the river system, and a third pair had neither training in the interpretation of aerial photos nor field experience. The criteria that we developed were applied equally well by the interpretors, regardless of their training or experience. Overall accuracy (i.e., omission errors) of all six classes combined was 68% correct, whereas, overall accuracy of individual classes ranged from 50 to 100% correct. Mapping accuracy (i.e. omission and commission errors) of individual classes ranged from 36 to 75%. Although the key developed for this study has only limited application outside the context of the data and sites examined in this study, it is concluded that low-altitude aerial photography, together with limited amounts of collateral ground survey information, can be used to economically identify beds of submersed macrophytes in the St. Clair-Detroit River system and other similar water bodies.

  10. On the equivalent classification of three-dimensional competitive Leslie/Gower models via the boundary dynamics on the carrying simplex.

    PubMed

    Jiang, Jifa; Niu, Lei

    2017-04-01

    We study the asymptotic behavior of the competitive Leslie/Gower model (map) [Formula: see text]It is shown that T unconditionally admits a globally attracting 1-codimensional invariant hypersurface [Formula: see text], called carrying simplex, such that every nontrivial orbit is asymptotic to one in [Formula: see text]. More general and easily checked conditions to guarantee the existence of carrying simplex for competitive maps are provided. An equivalence relation is defined relative to local stability of fixed points on [Formula: see text] (the boundary of [Formula: see text]) on the space of all three-dimensional Leslie/Gower models. Using a formula on the sum of the indices of all fixed points on the carrying simplex for three-dimensional maps, we list the 33 stable equivalence classes in terms of simple inequalities on the parameters [Formula: see text] and [Formula: see text] and draw their orbits on [Formula: see text]. In classes 1-18, every nontrivial orbit tends to a fixed point on [Formula: see text]. In classes 19-25, each map possesses a unique positive fixed point which is a saddle on [Formula: see text], and hence Neimark-Sacker bifurcations do not occur. Neimark-Sacker bifurcation does occur within each of classes 26-31, while it does not occur in class 32. Each map from class 27 admits a heteroclinic cycle, which forms the boundary of [Formula: see text]. The criteria on the stability of heteroclinic cycles are also given. This classification makes it possible to further investigate various dynamical properties in respective class.

  11. Digital classification of Landsat data for vegetation and land-cover mapping in the Blackfoot River watershed, southeastern Idaho

    USGS Publications Warehouse

    Pettinger, L.R.

    1982-01-01

    This paper documents the procedures, results, and final products of a digital analysis of Landsat data used to produce a vegetation and landcover map of the Blackfoot River watershed in southeastern Idaho. Resource classes were identified at two levels of detail: generalized Level I classes (for example, forest land and wetland) and detailed Levels II and III classes (for example, conifer forest, aspen, wet meadow, and riparian hardwoods). Training set statistics were derived using a modified clustering approach. Environmental stratification that separated uplands from lowlands improved discrimination between resource classes having similar spectral signatures. Digital classification was performed using a maximum likelihood algorithm. Classification accuracy was determined on a single-pixel basis from a random sample of 25-pixel blocks. These blocks were transferred to small-scale color-infrared aerial photographs, and the image area corresponding to each pixel was interpreted. Classification accuracy, expressed as percent agreement of digital classification and photo-interpretation results, was 83.0:t 2.1 percent (0.95 probability level) for generalized (Level I) classes and 52.2:t 2.8 percent (0.95 probability level) for detailed (Levels II and III) classes. After the classified images were geometrically corrected, two types of maps were produced of Level I and Levels II and III resource classes: color-coded maps at a 1:250,000 scale, and flatbed-plotter overlays at a 1:24,000 scale. The overlays are more useful because of their larger scale, familiar format to users, and compatibility with other types of topographic and thematic maps of the same scale.

  12. Spatial distribution and occurrence probability of regional new particle formation events in eastern China

    NASA Astrophysics Data System (ADS)

    Shen, Xiaojing; Sun, Junying; Kivekäs, Niku; Kristensson, Adam; Zhang, Xiaoye; Zhang, Yangmei; Zhang, Lu; Fan, Ruxia; Qi, Xuefei; Ma, Qianli; Zhou, Huaigang

    2018-01-01

    In this work, the spatial extent of new particle formation (NPF) events and the relative probability of observing particles originating from different spatial origins around three rural sites in eastern China were investigated using the NanoMap method, using particle number size distribution (PNSD) data and air mass back trajectories. The length of the datasets used were 7, 1.5, and 3 years at rural sites Shangdianzi (SDZ) in the North China Plain (NCP), Mt. Tai (TS) in central eastern China, and Lin'an (LAN) in the Yangtze River Delta region in eastern China, respectively. Regional NPF events were observed to occur with the horizontal extent larger than 500 km at SDZ and TS, favoured by the fast transport of northwesterly air masses. At LAN, however, the spatial footprint of NPF events was mostly observed around the site within 100-200 km. Difference in the horizontal spatial distribution of new particle source areas at different sites was connected to typical meteorological conditions at the sites. Consecutive large-scale regional NPF events were observed at SDZ and TS simultaneously and were associated with a high surface pressure system dominating over this area. Simultaneous NPF events at SDZ and LAN were seldom observed. At SDZ the polluted air masses arriving over the NCP were associated with higher particle growth rate (GR) and new particle formation rate (J) than air masses from Inner Mongolia (IM). At TS the same phenomenon was observed for J, but GR was somewhat lower in air masses arriving over the NCP compared to those arriving from IM. The capability of NanoMap to capture the NPF occurrence probability depends on the length of the dataset of PNSD measurement but also on topography around the measurement site and typical air mass advection speed during NPF events. Thus the long-term measurements of PNSD in the planetary boundary layer are necessary in the further study of spatial extent and the probability of NPF events. The spatial extent, relative probability of occurrence, and typical evolution of PNSD during NPF events presented in this study provide valuable information to further understand the climate and air quality effects of new particle formation.

  13. An Investigation of Two Instructional Settings in the Use of Semantic Mapping with Poor Readers. Program Report 85-4.

    ERIC Educational Resources Information Center

    Pittelman, Susan D.; And Others

    A study investigated whether semantic mapping is more effective for poor readers instructed in a small group of poor readers or in a class of students with mixed reading abilities. Students in five fourth-grade classes served as the control, receiving no semantic mapping instruction. Subjects, 39 fourth-grade poor readers, were presented semantic…

  14. Documentation for Initial Seismic Hazard Maps for Haiti

    USGS Publications Warehouse

    Frankel, Arthur; Harmsen, Stephen; Mueller, Charles; Calais, Eric; Haase, Jennifer

    2010-01-01

    In response to the urgent need for earthquake-hazard information after the tragic disaster caused by the moment magnitude (M) 7.0 January 12, 2010, earthquake, we have constructed initial probabilistic seismic hazard maps for Haiti. These maps are based on the current information we have on fault slip rates and historical and instrumental seismicity. These initial maps will be revised and improved as more data become available. In the short term, more extensive logic trees will be developed to better capture the uncertainty in key parameters. In the longer term, we will incorporate new information on fault parameters and previous large earthquakes obtained from geologic fieldwork. These seismic hazard maps are important for the management of the current crisis and the development of building codes and standards for the rebuilding effort. The boundary between the Caribbean and North American Plates in the Hispaniola region is a complex zone of deformation. The highly oblique ~20 mm/yr convergence between the two plates (DeMets and others, 2000) is partitioned between subduction zones off of the northern and southeastern coasts of Hispaniola and strike-slip faults that transect the northern and southern portions of the island. There are also thrust faults within the island that reflect the compressional component of motion caused by the geometry of the plate boundary. We follow the general methodology developed for the 1996 U.S. national seismic hazard maps and also as implemented in the 2002 and 2008 updates. This procedure consists of adding the seismic hazard calculated from crustal faults, subduction zones, and spatially smoothed seismicity for shallow earthquakes and Wadati-Benioff-zone earthquakes. Each one of these source classes will be described below. The lack of information on faults in Haiti requires many assumptions to be made. These assumptions will need to be revisited and reevaluated as more fieldwork and research are accomplished. We made two sets of maps using different assumptions about site conditions. One set of maps is for a firm-rock site condition (30-m averaged shear-wave velocity, Vs30, of 760 m/s). We also developed hazard maps that contain site amplification based on a grid of Vs30 values estimated from topographic slope. These maps take into account amplification from soils. We stress that these new maps are designed to quantify the hazard for Haiti; they do not consider all the sources of earthquake hazard that affect the Dominican Republic and therefore should not be considered as complete hazard maps for eastern Hispaniola. For example, we have not included hazard from earthquakes in the Mona Passage nor from large earthquakes on the subduction zone interface north of Puerto Rico. Furthermore, they do not capture all the earthquake hazards for eastern Cuba.

  15. Using a remote sensing/GIS model to predict southwestern Willow Flycatcher breeding habitat along the Rio Grande, New Mexico

    USGS Publications Warehouse

    Hatten, James R.; Sogge, Mark K.

    2007-01-01

    Introduction The Southwestern Willow Flycatcher (Empidonax traillii extimus; hereafter SWFL) is a federally endangered bird (USFWS 1995) that breeds in riparian areas in portions of New Mexico, Arizona, southwestern Colorado, extreme southern Utah and Nevada, and southern California (USFWS 2002). Across this range, it uses a variety of plant species as nesting/breeding habitat, but in all cases prefers sites with dense vegetation, high canopy, and proximity to surface water or saturated soils (Sogge and Marshall 2000). As of 2005, the known rangewide breeding population of SWFLs was roughly 1,214 territories, with approximately 393 territories distributed among 36 sites in New Mexico (Durst et al. 2006), primarily along the Rio Grande. One of the key challenges facing the management and conservation of the Southwestern Willow Flycatcher is that riparian areas are dynamic, with individual habitat patches subject to cycles of creation, growth, and loss due to drought, flooding, fire, and other disturbances. Former breeding patches can lose suitability, and new habitat can develop within a matter of only a few years, especially in reservoir drawdown zones. Therefore, measuring and predicting flycatcher habitat - either to discover areas that might support SWFLs, or to identify areas that may develop into appropriate habitat - requires knowledge of recent/current habitat conditions and an understanding of the factors that determine flycatcher use of riparian breeding sites. In the past, much of the determination of whether a riparian site is likely to support breeding flycatchers has been based on qualitative criteria (for example, 'dense vegetation' or 'large patches'). These determinations often require on-the-ground field evaluations by local or regional SWFL experts. While this has proven valuable in locating many of the currently known breeding sites, it is difficult or impossible to apply this approach effectively over large geographic areas (for example, the middle Rio Grande). The SWFL Recovery Plan (USFWS 2002) recognizes the importance of developing new approaches to habitat identification, and recommends the development of drainage-scale, quantitative habitat models. In particular, the plan suggests using models based on remote sensing and Geographic Information System (GIS) technology that can capture the relatively dynamic habitat changes that occur in southwestern riparian systems. In 1999, Arizona Game and Fish Department (AGFD) developed a GIS-based model (Hatten and Paradzick 2003) to identify SWFL breeding habitat from Landsat Thematic Mapper imagery and 30-m resolution digital elevation models (DEMs). The model was developed with presence/absence survey data acquired along the San Pedro and Gila rivers, and from the Salt River and Tonto Creek inlets to Roosevelt Lake in southern Arizona (collectively called the project area). The GIS-based model used a logistic regression equation to divide riparian vegetation into 5 probability classes based upon characteristics of riparian vegetation and floodplain size. This model was tested by predicting SWFL breeding habitat at Alamo Lake, Arizona, located 200 km from the project area (Hatten and Paradzick 2003). The GIS-based model performed as expected by identifying riparian areas with the highest SWFL nest densities, located in the higher probability classes. In 2002, AGFD applied the GIS-based model throughout Arizona, for riparian areas below 1,524 m (5,000 ft) elevation and within 1.6 km of perennial or intermittent waters (Dockens et al. 2004). Overall model accuracy (using probability classes 1-5, with class 5 having the greatest probability of nesting activity) for predicting the location of 2001 nest sites was 96.5 percent; accuracy decreased when fewer probability classes were defined as suitable. Map accuracy, determined from errors of commission, increased in higher probability classes in a fashion similar to errors of omission. Map accuracy, li

  16. MHC class I-associated peptides derive from selective regions of the human genome.

    PubMed

    Pearson, Hillary; Daouda, Tariq; Granados, Diana Paola; Durette, Chantal; Bonneil, Eric; Courcelles, Mathieu; Rodenbrock, Anja; Laverdure, Jean-Philippe; Côté, Caroline; Mader, Sylvie; Lemieux, Sébastien; Thibault, Pierre; Perreault, Claude

    2016-12-01

    MHC class I-associated peptides (MAPs) define the immune self for CD8+ T lymphocytes and are key targets of cancer immunosurveillance. Here, the goals of our work were to determine whether the entire set of protein-coding genes could generate MAPs and whether specific features influence the ability of discrete genes to generate MAPs. Using proteogenomics, we have identified 25,270 MAPs isolated from the B lymphocytes of 18 individuals who collectively expressed 27 high-frequency HLA-A,B allotypes. The entire MAP repertoire presented by these 27 allotypes covered only 10% of the exomic sequences expressed in B lymphocytes. Indeed, 41% of expressed protein-coding genes generated no MAPs, while 59% of genes generated up to 64 MAPs, often derived from adjacent regions and presented by different allotypes. We next identified several features of transcripts and proteins associated with efficient MAP production. From these data, we built a logistic regression model that predicts with good accuracy whether a gene generates MAPs. Our results show preferential selection of MAPs from a limited repertoire of proteins with distinctive features. The notion that the MHC class I immunopeptidome presents only a small fraction of the protein-coding genome for monitoring by the immune system has profound implications in autoimmunity and cancer immunology.

  17. MHC class I–associated peptides derive from selective regions of the human genome

    PubMed Central

    Pearson, Hillary; Granados, Diana Paola; Durette, Chantal; Bonneil, Eric; Courcelles, Mathieu; Rodenbrock, Anja; Laverdure, Jean-Philippe; Côté, Caroline; Thibault, Pierre

    2016-01-01

    MHC class I–associated peptides (MAPs) define the immune self for CD8+ T lymphocytes and are key targets of cancer immunosurveillance. Here, the goals of our work were to determine whether the entire set of protein-coding genes could generate MAPs and whether specific features influence the ability of discrete genes to generate MAPs. Using proteogenomics, we have identified 25,270 MAPs isolated from the B lymphocytes of 18 individuals who collectively expressed 27 high-frequency HLA-A,B allotypes. The entire MAP repertoire presented by these 27 allotypes covered only 10% of the exomic sequences expressed in B lymphocytes. Indeed, 41% of expressed protein-coding genes generated no MAPs, while 59% of genes generated up to 64 MAPs, often derived from adjacent regions and presented by different allotypes. We next identified several features of transcripts and proteins associated with efficient MAP production. From these data, we built a logistic regression model that predicts with good accuracy whether a gene generates MAPs. Our results show preferential selection of MAPs from a limited repertoire of proteins with distinctive features. The notion that the MHC class I immunopeptidome presents only a small fraction of the protein-coding genome for monitoring by the immune system has profound implications in autoimmunity and cancer immunology. PMID:27841757

  18. DEVELOPMENT OF LAND COVER AND TERRAIN DATA BASES FOR THE INNOKO NATIONAL WILDLIFE REFUGE, ALASKA, USING LANDSAT AND DIGITAL TERRAIN DATA.

    USGS Publications Warehouse

    Markon, Carl J.; Talbot, Stephen

    1986-01-01

    Landsat-derived land cover maps and associated elevation, slope, and aspect class maps were produced for the Innoko National Wildlife Refuge (3,850,000 acres; 1,555,095 hectares) in northwestern Alaska. These maps and associated digital data products are being used by the U. S. Fish and Wildlife Service for wildlife management, research, and comprehensive conservation planning. Portions of two Landsat Multispectral Scanner (MSS) scenes and digital terrain data were used to produce 1:250,000 scale land cover and terrain maps. Prints of summer and winter Landsat MSS scenes were used to manually interpret broad physiographic strata. These strata were transferred to U. S. Geological Survey 1:250,000-scale topographic maps and digitized. Seven major land cover classes and 23 subclasses were identified. The major land cover classes include: forest, scrub, dwarf scrub and related types, herbaceous, scarcely vegetated areas, water, and shadow.

  19. A correlation analysis of percent canopy closure versus TMS spectral response for selected forest sites in the San Juan National Forest, Colorado

    NASA Technical Reports Server (NTRS)

    Butera, M. K.

    1983-01-01

    The correlation of canopy closure with the signal response of individual thematic mapper simulator (TMS) bands for selected forest sites in the San Juan National Forest, Colorado was investigated. Ground truth consisted of a photointerpreted determination of percent canopy closure of 0 to 100 percent for 32 sites. The sites selected were situated on plateaus at an elevation of approximately 3 km with slope or = 10 percent. The predominant tree species were ponderosa pine and aspen. The mean TMS response per band per site was calculated from data acquired by aircraft during mid-September, 1981. A correlation analysis of TMS response vs. canopy closure resulted in the following correlation coefficients for bands 1 through 7, respectively: -0.757, -0.663, -0.666, -0.088, -0.797, -0.763. Two model regressions were applied to the TMS data set to create a map of predicted percent forest canopy closure for the study area. Results indicated percent predictive accuracies of 71, 74, and 57 for percent canopy closure classes of 0-25, 25-75, and 75-100, respectively.

  20. A trial map and GIS class on junior high school with university collaboration in Yokohama, Japan

    NASA Astrophysics Data System (ADS)

    Tabe, Toshimitsu; Ohnishi, Koji

    2018-05-01

    On the new curriculum of high school in Japan, geography will be compulsory subject in Japan from 2022. The indexes of new high school geography as compulsory subject will be 1. Using of maps and GIS, 2. Understanding of the world and International collaboration: Life and culture, issues of world, 3. Disaster prevention and ESD: natural environment and disaster, and construction of ideal society. The instruction of the GIS will be one of the issues for social studies teachers in the new curriculum. The aim of this study is to make the utilize map and GIS education content through trial class in junior high school. Trial class was done on Tsurugamine junior high school in Yokohama city with university and Yokohama city school board collaboration. In the trial class, the teacher indicated the old and new topographical maps to students and asked them to consider the characteristics of the area and the land use change. Transparent sheets overlaying is useful this activity. Transparent usage indicated the GIS function of overlay. It is good activity for students to understand the function of GIS. After the considering land use changes, they considered the future of their town. The several unused lands are spread in this area. Students present their opinions how to develop them. The important thing to carry out map and GIS class through neighborhood area is preparation of adequate maps. For this preparation, collaboration with university geography stuffs or undergraduate students are effective.

  1. Assessment of the Thematic Accuracy of Land Cover Maps

    NASA Astrophysics Data System (ADS)

    Höhle, J.

    2015-08-01

    Several land cover maps are generated from aerial imagery and assessed by different approaches. The test site is an urban area in Europe for which six classes (`building', `hedge and bush', `grass', `road and parking lot', `tree', `wall and car port') had to be derived. Two classification methods were applied (`Decision Tree' and `Support Vector Machine') using only two attributes (height above ground and normalized difference vegetation index) which both are derived from the images. The assessment of the thematic accuracy applied a stratified design and was based on accuracy measures such as user's and producer's accuracy, and kappa coefficient. In addition, confidence intervals were computed for several accuracy measures. The achieved accuracies and confidence intervals are thoroughly analysed and recommendations are derived from the gained experiences. Reliable reference values are obtained using stereovision, false-colour image pairs, and positioning to the checkpoints with 3D coordinates. The influence of the training areas on the results is studied. Cross validation has been tested with a few reference points in order to derive approximate accuracy measures. The two classification methods perform equally for five classes. Trees are classified with a much better accuracy and a smaller confidence interval by means of the decision tree method. Buildings are classified by both methods with an accuracy of 99% (95% CI: 95%-100%) using independent 3D checkpoints. The average width of the confidence interval of six classes was 14% of the user's accuracy.

  2. United States Offshore Wind Resource Assessment

    NASA Astrophysics Data System (ADS)

    Schwartz, M.; Haymes, S.; Heimiller, D.

    2008-12-01

    The utilization of the offshore wind resource will be necessary if the United States is to meet the goal of having 20% of its electricity generated by wind power because many of the electrical load centers in the country are located along the coastlines. The United States Department of Energy, through its National Renewable Energy Laboratory (NREL), has supported an ongoing project to assess the wind resource for the offshore regions of the contiguous United States including the Great Lakes. Final offshore maps with a horizontal resolution of 200 meters (m) have been completed for Texas, Louisiana, Georgia, northern New England, and the Great Lakes. The ocean wind resource maps extend from the coastline to 50 nautical miles (nm) offshore. The Great Lake maps show the resource for all of the individual lakes. These maps depict the wind resource at 50 m above the water as classes of wind power density. Class 1 represents the lowest available wind resource, while Class 7 is the highest resource. Areas with Class 5 and higher wind resource can be economical for offshore project development. As offshore wind turbine technology improves, areas with Class 4 and higher resource should become economically viable. The wind resource maps are generated using output from a modified numerical weather prediction model combined with a wind flow model. The preliminary modeling is performed by AWS Truewind under subcontract to NREL. The preliminary model estimates are sent to NREL to be validated. NREL validates the preliminary estimates by comparing 50 m model data to available measurements that are extrapolated to 50 m. The validation results are used to modify the preliminary map and produce the final resource map. The sources of offshore wind measurement data include buoys, automated stations, lighthouses, and satellite- derived ocean wind speed data. The wind electric potential is represented as Megawatts (MW) of potential installed capacity and is based on the square kilometers (sq. km) of Class 5 and higher wind resource found in a specific region. NREL uses a factor of 5 MW of installed capacity per sq. km of "windy water" for its raw electric potential calculations. NREL uses Geographic Information System data to break down the offshore wind potential by state, water depth, and distance from shore. The wind potential estimates are based on the updated maps, and on previous offshore resource information for regions where new maps are not available. The estimates are updated as new maps are completed. For example, the updated Texas offshore map shows almost 3000 sq. km of Class 5 resource within 10 nm of shore and nearly 2000 sq. km of Class 5 resource or 10,000 MW of potential installed capacity in water depths of less than 30 m. NREL plans to develop exclusion criteria to further refine the offshore wind potential

  3. Mapping urban revitalization: using GIS spatial analysis to evaluate a new housing policy.

    PubMed

    Perkins, Douglas D; Larsen, Courtney; Brown, Barbara B

    2009-01-01

    This longitudinal, multimethod study uses geographical information system (GIS) software to evaluate the community-wide impact of a neighborhood revitalization project. Unsystematic visual examination and analysis of GIS maps are offered as a complementary tool to quantitative analysis and one that is much more compelling, meaningful, and effective in presentation to community and nonscientific professional audiences. The centerpiece of the intervention was the development of a new, middle-class housing subdivision in an area that was declining physically and economically. This represents three major urban/housing policy directions: (1) the emphasis on home ownership for working-class families, (2) the deconcentration of poverty through development of mixed-income neighborhoods, and (3) the clean up and redevelopment of contaminated, former industrial brownfields. Resident survey responses, objective environmental assessment observations, and building permit data were collected, geocoded at the address level, and aggregated to the block level on 60 street blocks in the older neighborhoods surrounding the new housing in two waves: during site clearing and housing construction (Time 1: 1993-95) and three years post-completion (Time 2: 1998-99). Variables mapped include (a) Time 1-2 change in self-reported home repairs and improvements, (b) change in the assessed physical condition of yards and exteriors of 925 individual residential properties, (c) change in residents' home pride, and (d) a city archive of building permits at Time 2. Physical conditions improved overall in the neighborhood, but spatial analysis of the maps suggest that the spillover effects, if any, of the new housing were geographically limited and included unintended negative psychological consequences. Results argue for greater use of GIS and the street block level in community research and of psychological and behavioral variables in planning research and decisions.

  4. Winter wheat mapping combining variations before and after estimated heading dates

    NASA Astrophysics Data System (ADS)

    Qiu, Bingwen; Luo, Yuhan; Tang, Zhenghong; Chen, Chongcheng; Lu, Difei; Huang, Hongyu; Chen, Yunzhi; Chen, Nan; Xu, Weiming

    2017-01-01

    Accurate and updated information on winter wheat distribution is vital for food security. The intra-class variability of the temporal profiles of vegetation indices presents substantial challenges to current time series-based approaches. This study developed a new method to identify winter wheat over large regions through a transformation and metric-based approach. First, the trend surfaces were established to identify key phenological parameters of winter wheat based on altitude and latitude with references to crop calendar data from the agro-meteorological stations. Second, two phenology-based indicators were developed based on the EVI2 differences between estimated heading and seedling/harvesting dates and the change amplitudes. These two phenology-based indicators revealed variations during the estimated early and late growth stages. Finally, winter wheat data were extracted based on these two metrics. The winter wheat mapping method was applied to China based on the 250 m 8-day composite Moderate Resolution Imaging Spectroradiometer (MODIS) 2-band Enhanced Vegetation Index (EVI2) time series datasets. Accuracy was validated with field survey data, agricultural census data, and Landsat-interpreted results in test regions. When evaluated with 653 field survey sites and Landsat image interpreted data, the overall accuracy of MODIS-derived images in 2012-2013 was 92.19% and 88.86%, respectively. The MODIS-derived winter wheat areas accounted for over 82% of the variability at the municipal level when compared with agricultural census data. The winter wheat mapping method developed in this study demonstrates great adaptability to intra-class variability of the vegetation temporal profiles and has great potential for further applications to broader regions and other types of agricultural crop mapping.

  5. Do Science and Technology Teachers and Pre-Service Primary Teachers Have Different Thoughts about Concept Maps in Science and Technology Lessons?

    ERIC Educational Resources Information Center

    Karakuyu, Yunus

    2011-01-01

    The purpose of this study is to determine the thoughts of primary science and technology teachers, primary class teachers, pre-service primary class teachers and pre-service primary science and technology teachers' about concept maps. This scale applied the use of basic and random method on the chosen 125 4th and 5th grade primary class teachers…

  6. The Cosmology Large Angular Scale Surveyor

    NASA Technical Reports Server (NTRS)

    Harrington, Kathleen; Marriage, Tobias; Ali, Aamir; Appel, John; Bennett, Charles; Boone, Fletcher; Brewer, Michael; Chan, Manwei; Chuss, David T.; Colazo, Felipe; hide

    2016-01-01

    The Cosmology Large Angular Scale Surveyor (CLASS) is a four telescope array designed to characterize relic primordial gravitational waves from inflation and the optical depth to reionization through a measurement of the polarized cosmic microwave background (CMB) on the largest angular scales. The frequencies of the four CLASS telescopes, one at 38 GHz, two at 93 GHz, and one dichroic system at 145217 GHz, are chosen to avoid spectral regions of high atmospheric emission and span the minimum of the polarized Galactic foregrounds: synchrotron emission at lower frequencies and dust emission at higher frequencies. Low-noise transition edge sensor detectors and a rapid front-end polarization modulator provide a unique combination of high sensitivity, stability, and control of systematics. The CLASS site, at 5200 m in the Chilean Atacama desert, allows for daily mapping of up to 70% of the sky and enables the characterization of CMB polarization at the largest angular scales. Using this combination of a broad frequency range, large sky coverage, control over systematics, and high sensitivity, CLASS will observe the reionization and recombination peaks of the CMB E- and B-mode power spectra. CLASS will make a cosmic variance limited measurement of the optical depth to reionization and will measure or place upper limits on the tensor-to-scalar ratio, r, down to a level of 0.01 (95% C.L.).

  7. Making large class basic histology lectures more interactive: The use of draw-along mapping techniques and associated educational activities.

    PubMed

    Kotzé, Sanet Henriët; Mole, Calvin Gerald

    2015-01-01

    At Stellenbosch University, South Africa, basic histology is taught to a combination class of almost 400 first-year medical, physiotherapy, and dietetic students. Many students often find the amount of work in basic histology lectures overwhelming and consequently loose interest. The aim was to determine if a draw-along mapping activity would focus students during large class lectures. After each lecture on three basic histology tissues, a guided draw-along mapping session covering the work from the lecture was introduced in the form of a click-advance PowerPoint presentation which was used to demonstrate the unfolding of an "ideal" map. The lecturer simultaneously drew a similar map using an overhead projector allowing the students to draw their own maps on blank sheets of paper along with the lecturer. Students remained attentive during the activity and many participated in answering informal questions posed by the lecturer as the map-making session progressed. After the last session, students completed an anonymous, voluntary questionnaire (response rate of 78%). The majority of students found the draw-along maps useful (94%) and believed that its use should be continued in the future (93%). A significant increase (P < 0.001) was found in the test results of student cohorts who were given the current intervention compared to cohorts from previous years who were given mind maps as handouts only or had no intervention. The use of the draw-along mapping sessions were successful in focusing students during large class lectures while also providing them with a useful tool for their studies. © 2015 American Association of Anatomists.

  8. Mapping of land cover in northern California with simulated hyperspectral satellite imagery

    NASA Astrophysics Data System (ADS)

    Clark, Matthew L.; Kilham, Nina E.

    2016-09-01

    Land-cover maps are important science products needed for natural resource and ecosystem service management, biodiversity conservation planning, and assessing human-induced and natural drivers of land change. Analysis of hyperspectral, or imaging spectrometer, imagery has shown an impressive capacity to map a wide range of natural and anthropogenic land cover. Applications have been mostly with single-date imagery from relatively small spatial extents. Future hyperspectral satellites will provide imagery at greater spatial and temporal scales, and there is a need to assess techniques for mapping land cover with these data. Here we used simulated multi-temporal HyspIRI satellite imagery over a 30,000 km2 area in the San Francisco Bay Area, California to assess its capabilities for mapping classes defined by the international Land Cover Classification System (LCCS). We employed a mapping methodology and analysis framework that is applicable to regional and global scales. We used the Random Forests classifier with three sets of predictor variables (reflectance, MNF, hyperspectral metrics), two temporal resolutions (summer, spring-summer-fall), two sample scales (pixel, polygon) and two levels of classification complexity (12, 20 classes). Hyperspectral metrics provided a 16.4-21.8% and 3.1-6.7% increase in overall accuracy relative to MNF and reflectance bands, respectively, depending on pixel or polygon scales of analysis. Multi-temporal metrics improved overall accuracy by 0.9-3.1% over summer metrics, yet increases were only significant at the pixel scale of analysis. Overall accuracy at pixel scales was 72.2% (Kappa 0.70) with three seasons of metrics. Anthropogenic and homogenous natural vegetation classes had relatively high confidence and producer and user accuracies were over 70%; in comparison, woodland and forest classes had considerable confusion. We next focused on plant functional types with relatively pure spectra by removing open-canopy shrublands, woodlands and mixed forests from the classification. This 12-class map had significantly improved accuracy of 85.1% (Kappa 0.83) and most classes had over 70% producer and user accuracies. Finally, we summarized important metrics from the multi-temporal Random Forests to infer the underlying chemical and structural properties that best discriminated our land-cover classes across seasons.

  9. Coastal Ecosystem Assessment, Development and Creation of a Policy Tool using Unmanned Aerial Vehicles (UAVs) for: A Case Study of Western Puerto Rico Coastal Region

    NASA Astrophysics Data System (ADS)

    Munoz Barreto, J.; Pillich, J.; Aponte Bermúdez, L. D.; Torres Pagan, G.

    2017-12-01

    This project utilizes low-cost Unmanned Aerial Vehicles (UAVs) based systems for different applications, such as low-altitude (high resolution) aerial photogrammetry for aerial analysis of vegetation, reconstruction of beach topography and mapping coastal erosion to understand, and estimated ecosystem values. As part of this work, five testbeds coastal sites, designated as the Caribbean Littoral Aerial Surveillance System (CLASS), were established. The sites are distributed along western Puerto Rico coastline where population and industry (tourism) are very much clustered and dense along the coast. Over the past year, rapid post-storm deployment of UAV surveying has been successfully integrated into the CLASS sites, specifically at Rincon (Puerto Rico), where coastal erosion has raised the public and government concern over the past decades. A case study is presented here where we collected aerial photos before and after the swells caused by Hurricane Mathew (October 2016). We merged the point cloud obtained from the UAV photogrammetric assessment with topo-bathymetric data, to get a complete beach topography. Using the rectified and georeferenced UAV orthophotos, we identified the maximum wave runup for the pre-swell and post-swell events. Also, we used numerical modeling (X-Beach) to simulate the rate-of-change dynamics of the coastal zones and compare the model results to observed values (including multiple historic shoreline positions). In summary, our project has accomplished the first milestone which is the Development and Implementation of an Effective Shoreline Monitoring Program using UAVs. The activities of the monitoring program have enabled the collection of crucial data for coastal mapping along Puerto Rico's shorelines with emphasis on coastal erosion hot spots zones and ecosystem values. Our results highlight the potential of the synergy between UAVs, photogrammetry, and Geographic Information Systems to provide faster and low-cost reliable information on littoral zone changes compared with traditional techniques without losing in accuracy.

  10. The Cosmology Large Angular Scale Surveyor (CLASS)

    NASA Technical Reports Server (NTRS)

    Harrington, Kathleen; Marriange, Tobias; Aamir, Ali; Appel, John W.; Bennett, Charles L.; Boone, Fletcher; Brewer, Michael; Chan, Manwei; Chuss, David T.; Colazo, Felipe; hide

    2016-01-01

    The Cosmology Large Angular Scale Surveyor (CLASS) is a four telescope array designed to characterize relic primordial gravitational waves from in ation and the optical depth to reionization through a measurement of the polarized cosmic microwave background (CMB) on the largest angular scales. The frequencies of the four CLASS telescopes, one at 38 GHz, two at 93 GHz, and one dichroic system at 145/217 GHz, are chosen to avoid spectral regions of high atmospheric emission and span the minimum of the polarized Galactic foregrounds: synchrotron emission at lower frequencies and dust emission at higher frequencies. Low-noise transition edge sensor detectors and a rapid front-end polarization modulator provide a unique combination of high sensitivity, stability, and control of systematics. The CLASS site, at 5200 m in the Chilean Atacama desert, allows for daily mapping of up to 70% of the sky and enables the characterization of CMB polarization at the largest angular scales. Using this combination of a broad frequency range, large sky coverage, control over systematics, and high sensitivity, CLASS will observe the reionization and recombination peaks of the CMB E- and B-mode power spectra. CLASS will make a cosmic variance limited measurement of the optical depth to reionization and will measure or place upper limits on the tensor-to-scalar ratio, r, down to a level of 0.01 (95% C.L.).

  11. Generation of 2D Land Cover Maps for Urban Areas Using Decision Tree Classification

    NASA Astrophysics Data System (ADS)

    Höhle, J.

    2014-09-01

    A 2D land cover map can automatically and efficiently be generated from high-resolution multispectral aerial images. First, a digital surface model is produced and each cell of the elevation model is then supplemented with attributes. A decision tree classification is applied to extract map objects like buildings, roads, grassland, trees, hedges, and walls from such an "intelligent" point cloud. The decision tree is derived from training areas which borders are digitized on top of a false-colour orthoimage. The produced 2D land cover map with six classes is then subsequently refined by using image analysis techniques. The proposed methodology is described step by step. The classification, assessment, and refinement is carried out by the open source software "R"; the generation of the dense and accurate digital surface model by the "Match-T DSM" program of the Trimble Company. A practical example of a 2D land cover map generation is carried out. Images of a multispectral medium-format aerial camera covering an urban area in Switzerland are used. The assessment of the produced land cover map is based on class-wise stratified sampling where reference values of samples are determined by means of stereo-observations of false-colour stereopairs. The stratified statistical assessment of the produced land cover map with six classes and based on 91 points per class reveals a high thematic accuracy for classes "building" (99 %, 95 % CI: 95 %-100 %) and "road and parking lot" (90 %, 95 % CI: 83 %-95 %). Some other accuracy measures (overall accuracy, kappa value) and their 95 % confidence intervals are derived as well. The proposed methodology has a high potential for automation and fast processing and may be applied to other scenes and sensors.

  12. Annualized earthquake loss estimates for California and their sensitivity to site amplification

    USGS Publications Warehouse

    Chen, Rui; Jaiswal, Kishor; Bausch, D; Seligson, H; Wills, C.J.

    2016-01-01

    Input datasets for annualized earthquake loss (AEL) estimation for California were updated recently by the scientific community, and include the National Seismic Hazard Model (NSHM), site‐response model, and estimates of shear‐wave velocity. Additionally, the Federal Emergency Management Agency’s loss estimation tool, Hazus, was updated to include the most recent census and economic exposure data. These enhancements necessitated a revisit to our previous AEL estimates and a study of the sensitivity of AEL estimates subjected to alternate inputs for site amplification. The NSHM ground motions for a uniform site condition are modified to account for the effect of local near‐surface geology. The site conditions are approximated in three ways: (1) by VS30 (time‐averaged shear‐wave velocity in the upper 30 m) value obtained from a geology‐ and topography‐based map consisting of 15 VS30 groups, (2) by site classes categorized according to National Earthquake Hazards Reduction Program (NEHRP) site classification, and (3) by a uniform NEHRP site class D. In case 1, ground motions are amplified using the Seyhan and Stewart (2014) semiempirical nonlinear amplification model. In cases 2 and 3, ground motions are amplified using the 2014 version of the NEHRP site amplification factors, which are also based on the Seyhan and Stewart model but are approximated to facilitate their use for building code applications. Estimated AELs are presented at multiple resolutions, starting with the state level assessment and followed by detailed assessments for counties, metropolitan statistical areas (MSAs), and cities. AEL estimate at the state level is ∼$3.7  billion, 70% of which is contributed from Los Angeles–Long Beach–Santa Ana, San Francisco–Oakland–Fremont, and Riverside–San Bernardino–Ontario MSAs. The statewide AEL estimate is insensitive to alternate assumptions of site amplification. However, we note significant differences in AEL estimates among the three sensitivity cases for smaller geographic units.

  13. Soil property maps of Africa at 250 m resolution

    NASA Astrophysics Data System (ADS)

    Kempen, Bas; Hengl, Tomislav; Heuvelink, Gerard B. M.; Leenaars, Johan G. B.; Walsh, Markus G.; MacMillan, Robert A.; Mendes de Jesus, Jorge S.; Shepherd, Keith; Sila, Andrew; Desta, Lulseged T.; Tondoh, Jérôme E.

    2015-04-01

    Vast areas of arable land in sub-Saharan Africa suffer from low soil fertility and physical soil constraints, and significant amounts of nutrients are lost yearly due to unsustainable soil management practices. At the same time it is expected that agriculture in Africa must intensify to meet the growing demand for food and fiber the next decades. Protection and sustainable management of Africa's soil resources is crucial to achieve this. In this context, comprehensive, accurate and up-to-date soil information is an essential input to any agricultural or environmental management or policy and decision-making model. In Africa, detailed soil information has been fragmented and limited to specific zones of interest for decades. To help bridge the soil information gap in Africa, the Africa Soil Information Service (AfSIS) project was established in 2008. AfSIS builds on recent advances in digital soil mapping, infrared spectroscopy, remote sensing, (geo)statistics, and integrated soil fertility management to improve the way soils are evaluated, mapped, and monitored. Over the period 2008-2014, the AfSIS project has compiled two soil profile data sets (about 28,000 unique locations): the Africa Soil Profiles (legacy) database and the AfSIS Sentinel Site (new soil samples) database -- the two data sets represent the most comprehensive soil sample database of the African continent to date. In addition a large set of high-resolution environmental data layers (covariates) was assembled. The point data were used in the AfSIS project to generate a set of maps of key soil properties for the African continent at 250 m spatial resolution: sand, silt and clay fractions, bulk density, organic carbon, total nitrogen, pH, cation-exchange capacity, exchangeable bases (Ca, K, Mg, Na), exchangeable acidity, and Al content. These properties were mapped for six depth intervals up to 2 m: 0-5 cm, 5-15 cm, 15-30 cm, 30-60 cm, 60-100 cm, and 100-200 cm. Random forests modelling was used to relate the soil profile observations to a set covariates, that included global soil class and property maps, MODIS imagery and a DEM, in a 3D mapping framework. The model residuals were interpolated by 3D kriging, after which the kriging predictions were added to the random forests predictions to obtain the soil property predictions. The model predictions were validated with 5-fold cross-validation. The random forests models explained between 37% (exch. Na) and 85% (Al content) of the variation in the data. Results also show that globally predicted soil classes help improve continental scale mapping of the soil nutrients and are often among the most important predictors. We conclude that the first mapping results look promising. We used an automated modelling framework that enables re-computing the maps as new data becomes arrives, hereby gradually improving the maps. We showed that global maps of soil classes and properties produced with models that were predominantly calibrated on areas with plentiful observations can be used to improve the accuracy of predictions in regions with less plentiful data, such as Africa.

  14. Terrestrial Ecosystems - Topographic Moisture Potential of the Conterminous United States

    USGS Publications Warehouse

    Cress, Jill J.; Sayre, Roger G.; Comer, Patrick; Warner, Harumi

    2009-01-01

    As part of an effort to map terrestrial ecosystems, the U.S. Geological Survey has generated topographic moisture potential classes to be used in creating maps depicting standardized, terrestrial ecosystem models for the conterminous United States, using an ecosystems classification developed by NatureServe. A biophysical stratification approach, developed for South America and now being implemented globally, was used to model the ecosystem distributions. Substrate moisture regimes strongly influence the differentiation and distribution of terrestrial ecosystems, and therefore topographic moisture potential is one of the key input layers in this biophysical stratification. The method used to produce these topographic moisture potential classes was based on the derivation of ground moisture potential using a combination of computed topographic characteristics (CTI, slope, and aspect) and mapped National Wetland Inventory (NWI) boundaries. This method does not use climate or soil attributes to calculate relative topographic moisture potential since these characteristics are incorporated into the ecosystem model though other input layers. All of the topographic data used for this assessment were derived from the USGS 30-meter National Elevation Dataset (NED ) including the National Compound Topographic Index (CTI). The CTI index is a topographically derived measure of slope for a raster cell and the contributing area from upstream raster cells, and thus expresses potential for water flow to a point. In other words CTI data are 'a quantification of the position of a site in the local landscape', where the lowest values indicate ridges and the highest values indicate stream channels, lakes and ponds. These CTI values were compared to independent estimates of water accumulation by obtaining geospatial data from a number of sample locations representing two types of NWI boundaries: freshwater emergent wetlands and freshwater forested/shrub wetlands. Where these shorelines (the interface between the NWI wetlands and adjacent land) occurred, the CTI values were extracted and a histogram of their statistical distributions was calculated. Based on an evaluation of these histograms, CTI thresholds were developed to separate periodically saturated or flooded land, mesic uplands (moderately moist), and uplands. After the range of CTI values for these three different substrate moisture regimes was determined, the CTI values were grouped into three initial topographic moisture potential classes. As a final step in the generation of this national data layer, the uplands classification was subdivided into either very dry uplands or dry uplands. Very dry uplands were defined as uplands with relatively steep, south-facing slopes, and identification of this class was based on the slope and aspect datasets derived from the NED. The remaining uplands that did not meet these additional criteria were simply re-classified as dry uplands. The final National Topographic Moisture Potential dataset for the conterminous United States contains four classes: periodically saturated or flooded land (CTI = 18.5), mesic uplands (12 = 24 degrees and 91 degrees =< Aspect =< 314 degrees). This map shows a smoothed and generalized image of the four topographic moisture potential classes. Additional information about this map and any of the data developed for the ecosystems modeling of the conterminous United States is available online at http://rmgsc.cr.usgs.gov/ecosystems/.

  15. Usability Evaluation of Public Web Mapping Sites

    NASA Astrophysics Data System (ADS)

    Wang, C.

    2014-04-01

    Web mapping sites are interactive maps that are accessed via Webpages. With the rapid development of Internet and Geographic Information System (GIS) field, public web mapping sites are not foreign to people. Nowadays, people use these web mapping sites for various reasons, in that increasing maps and related map services of web mapping sites are freely available for end users. Thus, increased users of web mapping sites led to more usability studies. Usability Engineering (UE), for instance, is an approach for analyzing and improving the usability of websites through examining and evaluating an interface. In this research, UE method was employed to explore usability problems of four public web mapping sites, analyze the problems quantitatively and provide guidelines for future design based on the test results. Firstly, the development progress for usability studies were described, and simultaneously several usability evaluation methods such as Usability Engineering (UE), User-Centered Design (UCD) and Human-Computer Interaction (HCI) were generally introduced. Then the method and procedure of experiments for the usability test were presented in detail. In this usability evaluation experiment, four public web mapping sites (Google Maps, Bing maps, Mapquest, Yahoo Maps) were chosen as the testing websites. And 42 people, who having different GIS skills (test users or experts), gender (male or female), age and nationality, participated in this test to complete the several test tasks in different teams. The test comprised three parts: a pretest background information questionnaire, several test tasks for quantitative statistics and progress analysis, and a posttest questionnaire. The pretest and posttest questionnaires focused on gaining the verbal explanation of their actions qualitatively. And the design for test tasks targeted at gathering quantitative data for the errors and problems of the websites. Then, the results mainly from the test part were analyzed. The success rate from different public web mapping sites was calculated and compared, and displayed by the means of diagram. And the answers from questionnaires were also classified and organized in this part. Moreover, based on the analysis, this paper expands the discussion about the layout, map visualization, map tools, search logic and etc. Finally, this paper closed with some valuable guidelines and suggestions for the design of public web mapping sites. Also, limitations for this research stated in the end.

  16. A qualitative study on using concept maps in problem-based learning.

    PubMed

    Chan, Zenobia C Y

    2017-05-01

    The visual arts, including concept maps, have been shown to be effective tools for facilitating student learning. However, the use of concept maps in nursing education has been under-explored. The aim of this study was to explore how students develop concept maps and what these concept maps consist of, and their views on the use of concept maps as a learning activity in a PBL class. A qualitative approach consisting of an analysis of the contents of the concept maps and interviews with students. The study was conducted in a school of nursing in a university in Hong Kong. A total of 38 students who attended the morning session (20 students) and afternoon session (18 students) respectively of a nursing problem-based learning class. The students in both the morning and afternoon classes were allocated into four groups (4-5 students per group). Each group was asked to draw two concept maps based on a given scenario, and then to participate in a follow-up interview. Two raters individually assessed the concept maps, and then discussed their views with each other. Among the concept maps that were drawn, four were selected. Their four core features of those maps were: a) the integration of informative and artistic elements; b) the delivery of sensational messages; c) the use of images rather than words; and d) three-dimensional and movable. Both raters were concerned about how informative the presentation was, the composition of the elements, and the ease of comprehension, and appreciated the three-dimensional presentation and effective use of images. From the results of the interview, the pros and cons of using concept maps were discerned. This study demonstrated how concept maps could be implemented in a PBL class to boost the students' creativity and to motivate them to learn. This study suggests the use of concept maps as an initiative to motivate student to learn, participate actively, and nurture their creativity. To conclude, this study explored an alternative way for students to make presentations and pioneered the use of art-based concept maps to facilitate student learning. Copyright © 2017 Elsevier Ltd. All rights reserved.

  17. Urban Land Cover/use Change Detection Using High Resolution SPOT 5 and SPOT 6 Images and Urban Atlas Nomenclature

    NASA Astrophysics Data System (ADS)

    Akay, S. S.; Sertel, E.

    2016-06-01

    Urban land cover/use changes like urbanization and urban sprawl have been impacting the urban ecosystems significantly therefore determination of urban land cover/use changes is an important task to understand trends and status of urban ecosystems, to support urban planning and to aid decision-making for urban-based projects. High resolution satellite images could be used to accurately, periodically and quickly map urban land cover/use and their changes by time. This paper aims to determine urban land cover/use changes in Gaziantep city centre between 2010 and 2105 using object based images analysis and high resolution SPOT 5 and SPOT 6 images. 2.5 m SPOT 5 image obtained in 5th of June 2010 and 1.5 m SPOT 6 image obtained in 7th of July 2015 were used in this research to precisely determine land changes in five-year period. In addition to satellite images, various ancillary data namely Normalized Difference Vegetation Index (NDVI), Difference Water Index (NDWI) maps, cadastral maps, OpenStreetMaps, road maps and Land Cover maps, were integrated into the classification process to produce high accuracy urban land cover/use maps for these two years. Both images were geometrically corrected to fulfil the 1/10,000 scale geometric accuracy. Decision tree based object oriented classification was applied to identify twenty different urban land cover/use classes defined in European Urban Atlas project. Not only satellite images and satellite image-derived indices but also different thematic maps were integrated into decision tree analysis to create rule sets for accurate mapping of each class. Rule sets of each satellite image for the object based classification involves spectral, spatial and geometric parameter to automatically produce urban map of the city centre region. Total area of each class per related year and their changes in five-year period were determined and change trend in terms of class transformation were presented. Classification accuracy assessment was conducted by creating a confusion matrix to illustrate the thematic accuracy of each class.

  18. Evaluating Soil Health Using Remotely Sensed Evapotranspiration on the Benchmark Barnes Soils of North Dakota

    NASA Astrophysics Data System (ADS)

    Bohn, Meyer; Hopkins, David; Steele, Dean; Tuscherer, Sheldon

    2017-04-01

    The benchmark Barnes soil series is an extensive upland Hapludoll of the northern Great Plains that is both economically and ecologically vital to the region. Effects of tillage erosion coupled with wind and water erosion have degraded Barnes soil quality, but with unknown extent, distribution, or severity. Evidence of soil degradation documented for a half century warrants that the assumption of productivity be tested. Soil resilience is linked to several dynamic soil properties and National Cooperative Soil Survey initiatives are now focused on identifying those properties for benchmark soils. Quantification of soil degradation is dependent on a reliable method for broad-scale evaluation. The soil survey community is currently developing rapid and widespread soil property assessment technologies. Improvements in satellite based remote-sensing and image analysis software have stimulated the application of broad-scale resource assessment. Furthermore, these technologies have fostered refinement of land-based surface energy balance algorithms, i.e. Mapping Evapotranspiration at High Resolution with Internalized Calibration (METRIC) algorithm for evapotranspiration (ET) mapping. The hypothesis of this study is that ET mapping technology can differentiate soil function on extensive landscapes and identify degraded areas. A recent soil change study in eastern North Dakota resampled legacy Barnes pedons sampled prior to 1960 and found significant decreases in organic carbon. An ancillary study showed that evapotranspiration (ET) estimates from METRIC decreased with Barnes erosion class severity. An ET raster map has been developed for three eastern North Dakota counties using METRIC and Landsat 5 imagery. ET pixel candidates on major Barnes soil map units were stratified into tertiles and classified as ranked ET subdivisions. A sampling population of randomly selected points stratified by ET class and county proportion was established. Morphologic and chemical data will be recorded at each sampling site to test whether soil properties correlate to ET, thus serving as a non-biased proxy for soil health.

  19. Seismic hazard analysis for Jayapura city, Papua

    NASA Astrophysics Data System (ADS)

    Robiana, R.; Cipta, A.

    2015-04-01

    Jayapura city had destructive earthquake which occurred on June 25, 1976 with the maximum intensity VII MMI scale. Probabilistic methods are used to determine the earthquake hazard by considering all possible earthquakes that can occur in this region. Earthquake source models using three types of source models are subduction model; comes from the New Guinea Trench subduction zone (North Papuan Thrust), fault models; derived from fault Yapen, TareraAiduna, Wamena, Memberamo, Waipago, Jayapura, and Jayawijaya, and 7 background models to accommodate unknown earthquakes. Amplification factor using geomorphological approaches are corrected by the measurement data. This data is related to rock type and depth of soft soil. Site class in Jayapura city can be grouped into classes B, C, D and E, with the amplification between 0.5 - 6. Hazard maps are presented with a 10% probability of earthquake occurrence within a period of 500 years for the dominant periods of 0.0, 0.2, and 1.0 seconds.

  20. Macroinvertebrate-based assessment of biological condition at selected sites in the Eagle River watershed, Colorado, 2000-07

    USGS Publications Warehouse

    Zuellig, Robert E.; Bruce, James F.; Healy, Brian D.; Williams, Cory A.

    2010-01-01

    The U.S. Geological Survey (USGS), in cooperation with the Colorado River Water Conservation District, Eagle County, Eagle River Water and Sanitation District, Upper Eagle Regional Water Authority, Colorado Department of Transportation, City of Aurora, Town of Eagle, Town of Gypsum, Town of Minturn, Town of Vail, Vail Resorts, Colorado Springs Utilities, Denver Water, and the U.S. Department of Agriculture Forest Service (FS), compiled macroinvertebrate (73 sites, 124 samples) data previously collected in the Eagle River watershed from selected USGS and FS studies, 2000-07. These data were analyzed to assess the biological condition (that is, biologically ?degraded? or ?good?) at selected sites in the Eagle River watershed and determine if site class (for example, urban or undeveloped) described biological condition. An independently developed predictive model was applied to calculate a site-specific measure of taxonomic completeness for macroinvertebrate communities, where taxonomic completeness was expressed as the ratio of observed (O) taxa to those expected (E) to occur at each site. Macroinvertebrate communities were considered degraded at sites were O/E values were less than 0.80, indicating that at least 20 percent of expected taxa were not observed. Sites were classified into one of four classes (undeveloped, adjacent road or highway or both, mixed, urban) using a combination of riparian land-cover characteristics, examination of topographic maps and aerial imagery, screening for exceedances in water-quality standards, and best professional judgment. Analysis of variance was used to determine if site class accounted for variability in mean macroinvertebrate O/E values. Finally, macroinvertebrate taxa observed more or less frequently than expected at urban sites were indentified. This study represents the first standardized assessment of biological condition of selected sites distributed across the Eagle River watershed. Of the 73 sites evaluated, just over half (55 percent) were considered in good biological condition (O/E greater than 0.80). The remaining sites were either consistently biologically degraded (30 percent; O/E less than 0.80) or varied annually between good and degraded condition (15 percent; O/E is less than or greater than 0.80). Sites primarily affected by urbanization were among the most severely degraded (lowest O/E values) when compared to other site classes. Although most urban sites were among the most severely degraded (lowest O/E values), a few sites had nearly intact macroinvertebrate communities (O/E near 1.0). Similar observations were noted among sites classified as mixed. Thirteen macroinvertebrate taxa were indentified that occurred more or less frequently than expected at urban sites. Additionally, six other taxa were impartial (tolerant) to the same conditions. Combined, these 19 taxa provide an opportunity to enhance the interpretation of future studies in the Eagle River watershed, but will require better insight into the responses of these taxa to specific stressors. Understanding the sources of variability affecting biological condition along with why some sites expected to be degraded, but showed otherwise, will have clear implications for mitigation efforts. Integrating results of this study with field and laboratory investigations will greatly enhance the ability to identify causal factors affecting biological condition at degraded sites, the logical next step. Information generated from such integrative studies will be imperative for well targeted mitigation efforts in the Eagle River watershed.

  1. Vegetational analysis with Skylab-3 imagery. [Perquimans County, North Carolina

    NASA Technical Reports Server (NTRS)

    Welby, C. W. (Principal Investigator); Holman, R. E.

    1975-01-01

    The author has identified the following significant results. Color infrared photography from Skylab 3 appeared to be superior to ERTS imagery in a vegetational study of northeastern North Carolina. An accuracy of 87% was achieved in delimiting species composition and zonation patterns of three coastal, vegetation classes. A vegetation map of Perquimans County, North Carolina, seemed to have a high degree of correlation with information provided by high altitude U-2 photography. Random verification sites revealed an overall interpretation accuracy above 84%. Comparison of maps drawn utilizing Skylab photography with North Carolina Dept. of Agriculture estimates of crop acreage revealed some marked discrepancies. The chief difference lies in the nonagricultural category in which there is a 30% discrepancy. This fact raised some questions as to the definition of nonagricultural land uses and methods used by the State Dept. of Agriculture to determine actual percentages of crops grown.

  2. Novelty Detection Classifiers in Weed Mapping: Silybum marianum Detection on UAV Multispectral Images.

    PubMed

    Alexandridis, Thomas K; Tamouridou, Afroditi Alexandra; Pantazi, Xanthoula Eirini; Lagopodi, Anastasia L; Kashefi, Javid; Ovakoglou, Georgios; Polychronos, Vassilios; Moshou, Dimitrios

    2017-09-01

    In the present study, the detection and mapping of Silybum marianum (L.) Gaertn. weed using novelty detection classifiers is reported. A multispectral camera (green-red-NIR) on board a fixed wing unmanned aerial vehicle (UAV) was employed for obtaining high-resolution images. Four novelty detection classifiers were used to identify S. marianum between other vegetation in a field. The classifiers were One Class Support Vector Machine (OC-SVM), One Class Self-Organizing Maps (OC-SOM), Autoencoders and One Class Principal Component Analysis (OC-PCA). As input features to the novelty detection classifiers, the three spectral bands and texture were used. The S. marianum identification accuracy using OC-SVM reached an overall accuracy of 96%. The results show the feasibility of effective S. marianum mapping by means of novelty detection classifiers acting on multispectral UAV imagery.

  3. Mapping soil texture targeting predefined depth range or synthetizing from standard layers?

    NASA Astrophysics Data System (ADS)

    Laborczi, Annamária; Dezső Kaposi, András; Szatmári, Gábor; Takács, Katalin; Pásztor, László

    2017-04-01

    There are increasing demands nowadays on spatial soil information in order to support environmental related and land use management decisions. Physical soil properties, especially particle size distribution play important role in this context. A few of the requirements can be satisfied by the sand-, silt-, and clay content maps compiled according to global standards such as GlobalSoilMap (GSM) or Soil Grids. Soil texture classes (e. g. according to USDA classification) can be derived from these three fraction data, in this way texture map can be compiled based on the proper separate maps. Soil texture class as well as fraction information represent direct input of crop-, meteorological- and hydrological models. The model inputs frequently require maps representing soil features of 0-30 cm depth, which is covered by three consecutive depth intervals according to standard specifications: 0-5 cm, 5-15 cm, 15-30 cm. Becoming GSM and SoilGrids the most detailed freely available spatial soil data sources, the common model users (e. g. meteorologists, agronomists, or hydrologists) would produce input map from (the weighted mean of) these three layers. However, if the basic soil data and proper knowledge is obtainable, a soil texture map targeting directly the 0-30 cm layer could be independently compiled. In our work we compared Hungary's soil texture maps compiled using the same reference and auxiliary data and inference methods but for differing layer distribution. We produced the 0-30 cm clay, silt and sand map as well as the maps for the three standard layers (0-5 cm, 5-15 cm, 15-30 cm). Maps of sand, silt and clay percentage were computed through regression kriging (RK) applying Additive Log-Ratio (alr) transformation. In addition to the Hungarian Soil Information and Monitoring System as reference soil data, digital elevation model and its derived components, soil physical property maps, remotely sensed images, land use -, geological-, as well as meteorological data were applied as auxiliary variables. We compared the directly compiled and the synthetized clay-, sand content, and texture class maps by different tools. In addition to pairwise comparison of basic statistical features (histograms, scatter plots), we examined the spatial distribution of the differences. We quantified the taxonomical distances of the textural classes, in order to investigate the differences of the map-pairs. We concluded that the directly computed and the synthetized maps show various differences. In the case of clay-, and sand content maps, the map-pairs have to be considered statistically different. On the other hand, the differences of the texture class maps are not significant. However, in all cases, the differences rather concern the extreme ranges and categories. Using of synthetized maps can intensify extremities by error propagation in models and scenarios. Based on our results, we suggest the usage of the directly composed maps.

  4. Integrated terrain mapping with digital Landsat images in Queensland, Australia

    USGS Publications Warehouse

    Robinove, Charles Joseph

    1979-01-01

    Mapping with Landsat images usually is done by selecting single types of features, such as soils, vegetation, or rocks, and creating visually interpreted or digitally classified maps of each feature. Individual maps can then be overlaid on or combined with other maps to characterize the terrain. Integrated terrain mapping combines several terrain features into each map unit which, in many cases, is more directly related to uses of the land and to methods of land management than the single features alone. Terrain brightness, as measured by the multispectral scanners in Landsat 1 and 2, represents an integration of reflectance from the terrain features within the scanner's instantaneous field of view and is therefore more correlatable with integrated terrain units than with differentiated ones, such as rocks, soils, and vegetation. A test of the feasibilty of the technique of mapping integrated terrain units was conducted in a part of southwestern Queensland, Australia, in cooperation with scientists of the Queensland Department of Primary Industries. The primary purpose was to test the use of digital classification techniques to create a 'land systems map' usable for grazing land management. A recently published map of 'land systems' in the area (made by aerial photograph interpretation and ground surveys), which are integrated terrain units composed of vegetation, soil, topography, and geomorphic features, was used as a basis for comparison with digitally classified Landsat multispectral images. The land systems, in turn, each have a specific grazing capacity for cattle (expressed in beasts per km 2 ) which is estimated following analysis of both research results and property carrying capacities. Landsat images, in computer-compatible tape form, were first contrast-stretched to increase their visual interpretability, and digitally classified by the parallelepiped method into distinct spectral classes to determine their correspondence to the land systems classes and to areally smaller, but readily recognizable, 'land units.' Many land systems appeared as distinct spectral classes or as acceptably homogeneous combinations of several spectral classes. The digitally classified map corresponded to the general geographic patterns of many of the land systems. Statistical correlation of the digitally classified map and the published map was not possible because the published map showed only land systems whereas the digitally classified map showed some land units as well as systems. The general correspondence of spectral classes to the integrated terrain units means that the digital mapping of the units may precede fieldwork and act as a guide to field sampling and detailed terrain unit description as well as measuring of the location, area, and extent of each unit. Extension of the Landsat mapping and classification technique to other arid and semi-arid regions of the world may be feasible.

  5. New Site Coefficients and Site Classification System Used in Recent Building Seismic Code Provisions

    USGS Publications Warehouse

    Dobry, R.; Borcherdt, R.D.; Crouse, C.B.; Idriss, I.M.; Joyner, W.B.; Martin, G.R.; Power, M.S.; Rinne, E.E.; Seed, R.B.

    2000-01-01

    Recent code provisions for buildings and other structures (1994 and 1997 NEHRP Provisions, 1997 UBC) have adopted new site amplification factors and a new procedure for site classification. Two amplitude-dependent site amplification factors are specified: Fa for short periods and Fv for longer periods. Previous codes included only a long period factor S and did not provide for a short period amplification factor. The new site classification system is based on definitions of five site classes in terms of a representative average shear wave velocity to a depth of 30 m (V?? s). This definition permits sites to be classified unambiguously. When the shear wave velocity is not available, other soil properties such as standard penetration resistance or undrained shear strength can be used. The new site classes denoted by letters A - E, replace site classes in previous codes denoted by S1 - S4. Site classes A and B correspond to hard rock and rock, Site Class C corresponds to soft rock and very stiff / very dense soil, and Site Classes D and E correspond to stiff soil and soft soil. A sixth site class, F, is defined for soils requiring site-specific evaluations. Both Fa and Fv are functions of the site class, and also of the level of seismic hazard on rock, defined by parameters such as Aa and Av (1994 NEHRP Provisions), Ss and S1 (1997 NEHRP Provisions) or Z (1997 UBC). The values of Fa and Fv decrease as the seismic hazard on rock increases due to soil nonlinearity. The greatest impact of the new factors Fa and Fv as compared with the old S factors occurs in areas of low-to-medium seismic hazard. This paper summarizes the new site provisions, explains the basis for them, and discusses ongoing studies of site amplification in recent earthquakes that may influence future code developments.

  6. Assessment of vegetation change in a fire-altered forest landscape

    NASA Technical Reports Server (NTRS)

    Jakubauskas, Mark E.; Lulla, Kamlesh P.; Mausel, Paul W.

    1990-01-01

    This research focused on determining the degree to which differences in burn severity relate to postfire vegetative cover within a Michigan pine forest. Landsat MSS data from June 1973 and TM data from October 1982 were classified using an unsupervised approach to create prefire and postfire cover maps of the study area. Using a raster-based geographic information system (GIS), the maps were compared, and a map of vegetation change was created. An IR/red band ratio from a June 1980 Landsat scene was classified to create a map of three degres of burn severity, which was then compared with the vegetation change map using a GIS. Classification comparisons of pine and deciduous forest classes (1973 to 1982) revealed that the most change in vegetation occurred in areas subjected to the most intense burn. Two classes of regenerating forest comprised the majority of the change, while the remaining change was associated with shrub vegetation or another forest class.

  7. Global forest cover mapping for the United Nations Food and Agriculture Organization forest resources assessment 2000 program

    USGS Publications Warehouse

    Zhu, Z.; Waller, E.

    2003-01-01

    Many countries periodically produce national reports on the status and changes of forest resources, using statistical surveys and spatial mapping of remotely sensed data. At the global level, the Food and Agriculture Organization (FAO) of the United Nations has conducted a Forest Resources Assessment (FRA) program every 10 yr since 1980, producing statistics and analysis that give a global synopsis of forest resources in the world. For the year 2000 of the FRA program (FRA2000), a global forest cover map was produced to provide spatial context to the extensive survey. The forest cover map, produced at the U.S. Geological Survey (USGS) EROS Data Center (EDC), has five classes: closed forest, open or fragmented forest, other wooded land, other land cover, and water. The first two forested classes at the global scale were delineated using combinations of temporal compositing, modified mixture analysis, geographic stratification, and other classification techniques. The remaining three FAO classes were derived primarily from the USGS global land cover characteristics database (Loveland et al. 1999). Validated on the basis of existing reference data sets, the map is estimated to be 77% accurate for the first four classes (no reference data were available for water), and 86% accurate for the forest and nonforest classification. The final map will be published as an insert to the FAO FRA2000 report.

  8. Theoretical Accuracy of Global Snow-Cover Mapping Using Satellite Data in the Earth Observing System (EOS) Era

    NASA Technical Reports Server (NTRS)

    Hall, D. K.; Foster, J. L.; Salomonson, V. V.; Klein, A. G.; Chien, J. Y. L.

    1998-01-01

    Following the launch of the Earth Observing System first morning (EOS-AM1) satellite, daily, global snow-cover mapping will be performed automatically at a spatial resolution of 500 m, cloud-cover permitting, using Moderate Resolution Imaging Spectroradiometer (MODIS) data. A technique to calculate theoretical accuracy of the MODIS-derived snow maps is presented. Field studies demonstrate that under cloud-free conditions when snow cover is complete, snow-mapping errors are small (less than 1%) in all land covers studied except forests where errors are greater and more variable. The theoretical accuracy of MODIS snow-cover maps is largely determined by percent forest cover north of the snowline. Using the 17-class International Geosphere-Biosphere Program (IGBP) land-cover maps of North America and Eurasia, the Northern Hemisphere is classified into seven land-cover classes and water. Snow-mapping errors estimated for each of the seven land-cover classes are extrapolated to the entire Northern Hemisphere for areas north of the average continental snowline for each month. Average monthly errors for the Northern Hemisphere are expected to range from 5 - 10%, and the theoretical accuracy of the future global snow-cover maps is 92% or higher. Error estimates will be refined after the first full year that MODIS data are available.

  9. Comparing the performance of flat and hierarchical Habitat/Land-Cover classification models in a NATURA 2000 site

    NASA Astrophysics Data System (ADS)

    Gavish, Yoni; O'Connell, Jerome; Marsh, Charles J.; Tarantino, Cristina; Blonda, Palma; Tomaselli, Valeria; Kunin, William E.

    2018-02-01

    The increasing need for high quality Habitat/Land-Cover (H/LC) maps has triggered considerable research into novel machine-learning based classification models. In many cases, H/LC classes follow pre-defined hierarchical classification schemes (e.g., CORINE), in which fine H/LC categories are thematically nested within more general categories. However, none of the existing machine-learning algorithms account for this pre-defined hierarchical structure. Here we introduce a novel Random Forest (RF) based application of hierarchical classification, which fits a separate local classification model in every branching point of the thematic tree, and then integrates all the different local models to a single global prediction. We applied the hierarchal RF approach in a NATURA 2000 site in Italy, using two land-cover (CORINE, FAO-LCCS) and one habitat classification scheme (EUNIS) that differ from one another in the shape of the class hierarchy. For all 3 classification schemes, both the hierarchical model and a flat model alternative provided accurate predictions, with kappa values mostly above 0.9 (despite using only 2.2-3.2% of the study area as training cells). The flat approach slightly outperformed the hierarchical models when the hierarchy was relatively simple, while the hierarchical model worked better under more complex thematic hierarchies. Most misclassifications came from habitat pairs that are thematically distant yet spectrally similar. In 2 out of 3 classification schemes, the additional constraints of the hierarchical model resulted with fewer such serious misclassifications relative to the flat model. The hierarchical model also provided valuable information on variable importance which can shed light into "black-box" based machine learning algorithms like RF. We suggest various ways by which hierarchical classification models can increase the accuracy and interpretability of H/LC classification maps.

  10. Interactive NCORP Map Details Community Research Sites | Division of Cancer Prevention

    Cancer.gov

    An interactive map of the NCI Community Oncology Research Program (NCORP) with detailed information on hundreds of community sites that take part in clinical trials is available on the NCORP website. NCORP Map NCORP Community Sites, Minority/Underserved Community Sites, and Research Bases |

  11. Assessing the impact of urbanization on urban climate by remote satellite perspective: a case study in Danang city, Vietnam

    NASA Astrophysics Data System (ADS)

    Hoang Khanh Linh, N.; Van Chuong, H.

    2015-04-01

    Urban climate, one of the challenges of human being in 21 century, is known as the results of land use/cover transformation. Its characteristics are distinguished by different varieties of climatic conditions in comparison with those of less built-up areas. The alterations lead to "Urban Heat Island", in which temperature in urban places is higher than surrounding environment. This happens not only in mega cities but also in less urbanized sites. The results determine the change of land use/cover and land surface temperature in Danang city by using multi-temporal Landsat and ASTER data for the period of 1990-2009. Based on the supervised classification method of maximum likelihood algorithm, satellite images in 1990, 2003, 2009 were classified into five classes: water, forest, shrub, agriculture, barren land and built-up area. For accuracy assessment, the error metric tabulations of mapped classes and reference classes were made. The Kappa statistics, derived from error matrices, were over 80% for all of land use maps. An comparison change detection algorithm was made in three intervals, 1990-2003, 2003-2009 and 1990-2009. The results showed that built-up area increased from 8.95% to 17.87% between 1990 and 2009, while agriculture, shrub and barren decreased from 12.98% to 7.53%, 15.72% to 9.89% and 3.88% to 1.77% due to urbanization that resulted from increasing of urban population and economic development, respectively. Land surface temperature (LST) maps were retrieved from thermal infrared bands of Landsat and ASTER data. The result indicated that the temperature in study area increased from 39oC to 41oC for the period of 1990-2009. Our analysis showed that built-up area had the highest LST values, whereas water bodies had the least LST. This study is expected to be useful for decision makers to make an appropriate land use planning which can mitigate the effect to urban climate.

  12. Use of remotely sensed data for analysis of land-use change in a highly urbanized district of mega city, Istanbul.

    PubMed

    Musaoglu, Nebiye; Gurel, Melike; Ulugtekin, Necla; Tanik, Aysegul; Seker, Dursun Zafer

    2006-01-01

    The study forms an example on monitoring and understanding urban dynamics by using remotely sensed data. The selected region is a rapidly urbanizing district of the mega city Istanbul, Gaziosmanpasa, whose population has almost doubled between years 1990 and 2000. The significance of this district besides its urban sprawl is that 61% of its land lies within the boundaries of an important drinking water reservoir watershed of the mega city, the Alibeykoy Reservoir. The land-use/cover changes that has occurred in the years of 1987 and 2001 are analyzed by utilizing a variety of data sources including satellite images (Landsat TM image of September 1987 and Landsat ETM+ image of May 2001), aerial photographs, orthophoto maps, standard 1:25000 scale topographic maps, and various thematic maps together with ground survey. Land-use changes are analyzed on the basis of protection zones of the reservoir watershed and the conversion of bare land and forests to settlements are clearly observed despite the national regulation on watershed protection. The decline of forests within the protection zones was from 69% to 63.6% whereas the increase in settlements was from 0.8% to 3.9%. The associated impact of establishing new residential sites with insufficient infrastructure is then linked with the water quality of the reservoir that has already reached to Class III characteristics regarding the recently revised national legislation stating that any class exceeding Class II cannot be used as a drinking water supply that in turn, had consequences on regulating the water services such as upgrading the existing water treatment plant. The paper aims to help the managers, decision-makers and urban planners by informing them of the past and current land-use/cover changes, to influence the cessation of illegal urbanization through suitable decision-making and environmental policy that adhere to sustainable resource use.

  13. Evaluation of the NASA GISS AR5 SCM/GCM at the ARM SGP Site using Self Organizing Maps

    NASA Astrophysics Data System (ADS)

    Kennedy, A. D.; Dong, X.; Xi, B.; Del Genio, A. D.; Wolf, A.

    2011-12-01

    Understanding and improving clouds in climate models requires moving beyond comparing annual and seasonal means. Errors can offset resulting in models getting the right long-term solution for the wrong reasons. For example, cloud parameterization errors may be balanced by the model incorrectly simulating the frequency distribution of atmospheric states. To faithfully evaluate climate models it is necessary to partition results into specific regimes. This has been completed in the past by evaluating models by their ability to produce cloud regimes as determined by observational products from satellites. An alternative approach is to first classify meteorological regimes (i.e., synoptic pattern and forcing) and then determine what types of clouds occur for each class. In this study, a competitive neural network known as the Self Organizing Map (SOM) is first used to classify synoptic patterns from a reanalysis over the Southern Great Plains (SGP) region during the period 1999-2008. These results are then used to evaluate simulated clouds from the AR5 version of the NASA GISS Model E Single Column Model (SCM). Unlike past studies that narrowed classes into several categories, this study assumes that the atmosphere is capable of producing an infinite amount of states. As a result, SOMs were generated with a large number of classes for specific months when model errors were found. With nearly ten years of forcing data, an adequate number of samples have been used to determine how cloud fraction varies across the SOM and to distinguish cloud errors. Barring major forcing errors, SCM studies can be thought of as what the GCM would simulate if the dynamics were perfect. As a result, simulated and observed CFs frequently occur for the same atmospheric states. For example, physically deep clouds during the winter months occur for a small number of classes in the SOM. Although the model produces clouds during the correct states, CFs are consistently too low. Instead, the model has a positive bias of thinner clouds during these classes that were associated with low-pressure systems and fronts. To determine if this and other SCM errors are present in the GCM, the Atmospheric Model Intercomparison Project (AMIP) run for the NASA GISS GCM will also be investigated. The SOM will be used to classify atmospheric states within the GCM to determine how well the GCM captures the PDF of observed atmospheric states. Together, these comparisons will allow for a thorough evaluation of the model at the ARM SGP site.

  14. Special-Status Plant Species Surveys and Vegetation Mapping at Lawrence Livermore National Laboratory

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Preston, R E

    This report presents the results of Jones & Stokes special-status plant surveys and vegetation mapping for the University of California, Lawrence Livermore National Laboratory (LLNL). Special-status plant surveys were conducted at Site 300 in April to May 1997 and in March to April 2002. Eight special-status plants were identified at Site 300: large-flowered fiddleneck, big tarplant, diamond-petaled poppy, round-leaved filaree, gypsum-loving larkspur, California androsace, stinkbells, and hogwallow starfish. Maps identifying the locations of these species, a discussion of the occurrence of these species at Site 300, and a checklist of the flora of Site 300 are presented. A reconnaissance surveymore » of the LLNL Livermore Site was conducted in June 2002. This survey concluded that no special-status plants occur at the Livermore Site. Vegetation mapping was conducted in 2001 at Site 300 to update a previous vegetation study done in 1986. The purpose of the vegetation mapping was to update and to delineate more precisely the boundaries between vegetation types and to map vegetation types that previously were not mapped. The vegetation map is presented with a discussion of the vegetation classification used.« less

  15. Using Temporal Modulation Sensitivity to Select Stimulation Sites for Processor MAPs in Cochlear Implant Listeners

    PubMed Central

    Garadat, Soha N.; Zwolan, Teresa A.; Pfingst, Bryan E.

    2013-01-01

    Previous studies in our laboratory showed that temporal acuity as assessed by modulation detection thresholds (MDTs) varied across activation sites and that this site-to-site variability was subject specific. Using two 10-channel MAPs, the previous experiments showed that processor MAPs that had better across-site mean (ASM) MDTs yielded better speech recognition than MAPs with poorer ASM MDTs tested in the same subject. The current study extends our earlier work on developing more optimal fitting strategies to test the feasibility of using a site-selection approach in the clinical domain. This study examined the hypothesis that revising the clinical speech processor MAP for cochlear implant (CI) recipients by turning off selected sites that have poorer temporal acuity and reallocating frequencies to the remaining electrodes would lead to improved speech recognition. Twelve CI recipients participated in the experiments. We found that site selection procedure based on MDTs in the presence of a masker resulted in improved performance on consonant recognition and recognition of sentences in noise. In contrast, vowel recognition was poorer with the experimental MAP than with the clinical MAP, possibly due to reduced spectral resolution when sites were removed from the experimental MAP. Overall, these results suggest a promising path for improving recipient outcomes using personalized processor-fitting strategies based on a psychophysical measure of temporal acuity. PMID:23881208

  16. Spatial resolution of pace mapping of idiopathic ventricular tachycardia/ectopy originating in the right ventricular outflow tract.

    PubMed

    Bogun, Frank; Taj, Majid; Ting, Michael; Kim, Hyungjin Myra; Reich, Stephen; Good, Eric; Jongnarangsin, Krit; Chugh, Aman; Pelosi, Frank; Oral, Hakan; Morady, Fred

    2008-03-01

    Pace mapping has been used to identify the site of origin of focal ventricular arrhythmias. The spatial resolution of pace mapping has not been adequately quantified using currently available three-dimensional mapping systems. The purpose of this study was to determine the spatial resolution of pace mapping in patients with idiopathic ventricular tachycardia or premature ventricular contractions originating in the right ventricular outflow tract. In 16 patients with idiopathic ventricular tachycardia/ectopy from the right ventricular outflow tract, comparisons and classifications of pace maps were performed by two observers (good pace map: match >10/12 leads; inadequate pace map: match < or =10/12 leads) and a customized MATLAB 6.0 program (assessing correlation coefficient and normalized root mean square of the difference (nRMSd) between test and template signals). With an electroanatomic mapping system, the correlation coefficient of each pace map was correlated with the distance between the pacing site and the effective ablation site. The endocardial area within the 10-ms activation isochrone was measured. The ablation procedure was effective in all patients. Sites with good pace maps had a higher correlation coefficient and lower nRMSd than sites with inadequate pace maps (correlation coefficient: 0.96 +/- 0.03 vs 0.76 +/- 0.18, P <.0001; nRMSd: 0.41 +/- 0.16 vs 0.89 +/- 0.39, P <.0001). Using receiver operating characteristic curves, appropriate cutoff values were >0.94 for correlation coefficient (sensitivity 81%, specificity 89%) and < or =0.54 for nRMSd (sensitivity 76%, specificity 80%). Good pace maps were located a mean of 7.3 +/- 5.0 mm from the effective ablation site and had a mean activation time of -24 +/- 7 ms. However, in 3 (18%) of 16 patients, the best pace map was inadequate at the effective ablation site, with an endocardial activation time at these sites of -25 +/- 12 ms. Pace maps with correlation coefficient > or =0.94 were confined to an area of 1.8 +/- 0.6 cm2. The 10-ms isochrone measured 1.2 +/- 0.7 cm2. The spatial resolution of a good pace map for targeting ventricular tachycardia/ectopy is 1.8 cm2 in the right ventricular outflow tract and therefore is inferior to the spatial resolution of activation mapping as assessed by isochronal activation. In approximately 20% of patients, pace mapping is unreliable in identifying the site of origin, possibly due a deeper site of origin and preferential conduction via fibers connecting the focus to the endocardial surface.

  17. MALT-45: A 7 mm survey of the southern Galaxy

    NASA Astrophysics Data System (ADS)

    Jordan, Christopher Harry

    2015-09-01

    The last decade has seen vast improvement in the knowledge of star formation within our Galaxy, largely owing to improvements in instrumentation, allowing astronomers to compile more data. However, despite the advances of technology, the quest for understanding high-mass star formation (HMSF) continues. As we go on, breakthroughs have occurred; a prime example is the discovery of the class II methanol maser, which exclusively signposts on-going sites of HMSF, but still lacks the detail necessary to identify HMSF in all forms. Once we have understood where, why and how HMSF can occur, we will be able to diagnose Galactic structure and evolution. Untargeted, large area surveys of molecular gas are ideal for identifying HMSF regions across a broad range of evolutionary phases. For example, searches for molecular species with a high critical density can highlight dense gases, which can then be used to probe Galactic structure and star formation. Because HMSF occurs in regions of dense molecular gas, mapping high-density tracers serves well to identify regions for study. The (1,1), (2,2) and (3,3) inversion transitions of ammonia (NH3) have been successfully mapped by the H2O Southern Galactic Plane Survey (HOPS), identifying previously unknown sites of star formation, as well as probing the structure of the Milky Way's spiral arms. Fortunately, HMSF can be identified by bright spectral lines in maser emission; HOPS also mapped the Galactic plane for water (H2O) masers and, perhaps more importantly, the Methanol MultiBeam survey identities class II methanol (CH3OH) masers, which are exclusively associated with HMSF. While class II CH3OH masers always signpost HMSF, they appear only in a specific evolutionary stage, and therefore other species (such as H2O masers) are required to identify other stages. Another, even higher density gas tracer useful for detecting HMSF and mapping the structure of our Galaxy is carbon monosulfide (CS). The ground state transition J = 1-0 for CS lies within the 7mm waveband, which also contains the poorly understood class I CH3OH maser. Unlike the class II variant, class I masers are not exclusively associated with HMSF, but do appear in star-forming regions across a wide range of evolutionary stages. A large problem for class I CH3OH maser studies is the bias in the targeted searches which have been used to find them; they have only been identified towards other masing regions (such as class II CH3OH), and therefore the properties of these masers are somewhat unclear. In this thesis, results focus on the MALT-45 survey using the Australia Telescope Compact Array (ATCA) in auto-correlation ('single-dish' mode). To date, MALT-45 has mapped the Galactic plane within 330° *lt; < l < 335°, jbj< 0:5°, which contains several known star-forming regions, including the G333 giant molecular cloud. MALT-45 surveys 12 spectral lines, but primarily CS (1-0), class I CH3OH masers and SiO (1-0) v = 0; 1; 2; 3. Bright, extended CS emission is detected across the survey region, and highlight two distinct velocities, due to different spiral arms of the Galaxy. In addition to the previously known 19 class I CH3OH masers, 58 new masers were detected. SiO masers were detected towards 47 regions, in various combinations of vibrational mode v = 1; 2; 3, all towards evolved infrared stars. Thermal SiO v = 0 emission is also detected across the survey region. Major science results from MALT-45 include: (i) A CS to NH3 comparison, which highlights cold, dense clumps as well as hot, evolved clumps. The cold and dense clumps appear to have self-absorption of CS emission in their centres and a relative over-abundance of NH3, while evolved clumps appear to have very little NH3 emission, despite being a dense gas tracer; (ii) Almost all (94 per cent) of ATLASGAL 870 um dust emission point sources are associated with at least a 3σ peak of CS emission; (iii) By comparing with peak CS velocities, class I CH3OH masers are good indicators of the systemic velocities of clouds; (iv) More than half (55 per cent) of the detected class I CH3OH masers are not associated with any other kind of maser; (v) Class II CH3OH, H2O and hydroxyl (OH) masers associate well with class I CH3OH masers, confirming that class I CH3OH masers occur towards a wide range of evolutionary stages in HMSF; (vi) Class I CH3OH masers appear to have no correlation in intensity or luminosity with other maser species; (vii) Class I CH3OH masers have typical projected linear distances from other masers associated with star formation, peaks of CS and 870 μm point sources within 0.5 pc; (viii) Class I CH3OH masers are spread over a larger area when also associated with class II CH3OH or OH masers, perhaps due to their more evolved state; (ix) Almost all (95 per cent) of class I CH3OH masers are associated with an ATLASGAL source; (x) Using ATLASGAL source parameters, a clump mass is calculated. The population of class I CH3OH masers has a broad range of associated masses (10^1.5 to 10^4.5M⊙), but peaks between 10^3.0 and 10^3.5M⊙. Higher masses tend to be associated with evolved regions of star formation, while lower masses tend to be non-evolved regions; (xi) SiO masers typically decrease in intensity with vibrational mode (v = 1; 2; 3), but eleven cases of stronger v = 2 than v = 1 emission were found, and two regions of only v = 2 emission were found; (xii) The relatively rare v = 3 vibrational mode of SiO (1-0) was detected towards three evolved infrared stars.

  18. Matching biomedical ontologies based on formal concept analysis.

    PubMed

    Zhao, Mengyi; Zhang, Songmao; Li, Weizhuo; Chen, Guowei

    2018-03-19

    The goal of ontology matching is to identify correspondences between entities from different yet overlapping ontologies so as to facilitate semantic integration, reuse and interoperability. As a well developed mathematical model for analyzing individuals and structuring concepts, Formal Concept Analysis (FCA) has been applied to ontology matching (OM) tasks since the beginning of OM research, whereas ontological knowledge exploited in FCA-based methods is limited. This motivates the study in this paper, i.e., to empower FCA with as much as ontological knowledge as possible for identifying mappings across ontologies. We propose a method based on Formal Concept Analysis to identify and validate mappings across ontologies, including one-to-one mappings, complex mappings and correspondences between object properties. Our method, called FCA-Map, incrementally generates a total of five types of formal contexts and extracts mappings from the lattices derived. First, the token-based formal context describes how class names, labels and synonyms share lexical tokens, leading to lexical mappings (anchors) across ontologies. Second, the relation-based formal context describes how classes are in taxonomic, partonomic and disjoint relationships with the anchors, leading to positive and negative structural evidence for validating the lexical matching. Third, the positive relation-based context can be used to discover structural mappings. Afterwards, the property-based formal context describes how object properties are used in axioms to connect anchor classes across ontologies, leading to property mappings. Last, the restriction-based formal context describes co-occurrence of classes across ontologies in anonymous ancestors of anchors, from which extended structural mappings and complex mappings can be identified. Evaluation on the Anatomy, the Large Biomedical Ontologies, and the Disease and Phenotype track of the 2016 Ontology Alignment Evaluation Initiative campaign demonstrates the effectiveness of FCA-Map and its competitiveness with the top-ranked systems. FCA-Map can achieve a better balance between precision and recall for large-scale domain ontologies through constructing multiple FCA structures, whereas it performs unsatisfactorily for smaller-sized ontologies with less lexical and semantic expressions. Compared with other FCA-based OM systems, the study in this paper is more comprehensive as an attempt to push the envelope of the Formal Concept Analysis formalism in ontology matching tasks. Five types of formal contexts are constructed incrementally, and their derived concept lattices are used to cluster the commonalities among classes at lexical and structural level, respectively. Experiments on large, real-world domain ontologies show promising results and reveal the power of FCA.

  19. The Effect of Arc Proximity on Hydrothermal Activity Along Spreading Centers: New Evidence From the Mariana Back Arc (12.7°N-18.3°N)

    NASA Astrophysics Data System (ADS)

    Baker, Edward T.; Walker, Sharon L.; Resing, Joseph A.; Chadwick, William W.; Merle, Susan G.; Anderson, Melissa O.; Butterfield, David A.; Buck, Nathan J.; Michael, Susanna

    2017-11-01

    Back-arc spreading centers (BASCs) form a distinct class of ocean spreading ridges distinguished by steep along-axis gradients in spreading rate and by additional magma supplied through subduction. These characteristics can affect the population and distribution of hydrothermal activity on BASCs compared to mid-ocean ridges (MORs). To investigate this hypothesis, we comprehensively explored 600 km of the southern half of the Mariana BASC. We used water column mapping and seafloor imaging to identify 19 active vent sites, an increase of 13 over the current listing in the InterRidge Database (IRDB), on the bathymetric highs of 7 of the 11 segments. We identified both high and low (i.e., characterized by a weak or negligible particle plume) temperature discharge occurring on segment types spanning dominantly magmatic to dominantly tectonic. Active sites are concentrated on the two southernmost segments, where distance to the adjacent arc is shortest (<40 km), spreading rate is highest (>48 mm/yr), and tectonic extension is pervasive. Re-examination of hydrothermal data from other BASCs supports the generalization that hydrothermal site density increases on segments <90 km from an adjacent arc. Although exploration quality varies greatly among BASCs, present data suggest that, for a given spreading rate, the mean spatial density of hydrothermal activity varies little between MORs and BASCs. The present global database, however, may be misleading. On both BASCs and MORs, the spatial density of hydrothermal sites mapped by high-quality water-column surveys is 2-7 times greater than predicted by the existing IRDB trend of site density versus spreading rate.

  20. Integrated Approaches On Archaeo-Geophysical Data

    NASA Astrophysics Data System (ADS)

    Kucukdemirci, M.; Piro, S.; Zamuner, D.; Ozer, E.

    2015-12-01

    Key words: Ground Penetrating Radar (GPR), Magnetometry, Geophysical Data Integration, Principal Component Analyse (PCA), Aizanoi Archaeological Site An application of geophysical integration methods which often appealed are divided into two classes as qualitative and quantitative approaches. This work focused on the application of quantitative integration approaches, which involve the mathematical and statistical integration techniques, on the archaeo-geophysical data obtained in Aizanoi Archaeological Site,Turkey. Two geophysical methods were applied as Ground Penetrating Radar (GPR) and Magnetometry for archaeological prospection on the selected archaeological site. After basic data processing of each geophysical method, the mathematical approaches of Sums and Products and the statistical approach of Principal Component Analysis (PCA) have been applied for the integration. These integration approches were first tested on synthetic digital images before application to field data. Then the same approaches were applied to 2D magnetic maps and 2D GPR time slices which were obtained on the same unit grids in the archaeological site. Initially, the geophysical data were examined individually by referencing with archeological maps and informations obtained from archaeologists and some important structures as possible walls, roads and relics were determined. The results of all integration approaches provided very important and different details about the anomalies related to archaeological features. By using all those applications, integrated images can provide complementary informations as well about the archaeological relics under the ground. Acknowledgements The authors would like to thanks to Scientific and Technological Research Council of Turkey (TUBITAK), Fellowship for Visiting Scientists Programme for their support, Istanbul University Scientific Research Project Fund, (Project.No:12302) and archaeologist team of Aizanoi Archaeological site for their support during the field work.

  1. Chemical Space Mapping and Structure-Activity Analysis of the ChEMBL Antiviral Compound Set.

    PubMed

    Klimenko, Kyrylo; Marcou, Gilles; Horvath, Dragos; Varnek, Alexandre

    2016-08-22

    Curation, standardization and data fusion of the antiviral information present in the ChEMBL public database led to the definition of a robust data set, providing an association of antiviral compounds to seven broadly defined antiviral activity classes. Generative topographic mapping (GTM) subjected to evolutionary tuning was then used to produce maps of the antiviral chemical space, providing an optimal separation of compound families associated with the different antiviral classes. The ability to pinpoint the specific spots occupied (responsibility patterns) on a map by various classes of antiviral compounds opened the way for a GTM-supported search for privileged structural motifs, typical for each antiviral class. The privileged locations of antiviral classes were analyzed in order to highlight underlying privileged common structural motifs. Unlike in classical medicinal chemistry, where privileged structures are, almost always, predefined scaffolds, privileged structural motif detection based on GTM responsibility patterns has the decisive advantage of being able to automatically capture the nature ("resolution detail"-scaffold, detailed substructure, pharmacophore pattern, etc.) of the relevant structural motifs. Responsibility patterns were found to represent underlying structural motifs of various natures-from very fuzzy (groups of various "interchangeable" similar scaffolds), to the classical scenario in medicinal chemistry (underlying motif actually being the scaffold), to very precisely defined motifs (specifically substituted scaffolds).

  2. Object-Based Classification of Ikonos Imagery for Mapping Large-Scale Vegetation Communities in Urban Areas.

    PubMed

    Mathieu, Renaud; Aryal, Jagannath; Chong, Albert K

    2007-11-20

    Effective assessment of biodiversity in cities requires detailed vegetation maps.To date, most remote sensing of urban vegetation has focused on thematically coarse landcover products. Detailed habitat maps are created by manual interpretation of aerialphotographs, but this is time consuming and costly at large scale. To address this issue, wetested the effectiveness of object-based classifications that use automated imagesegmentation to extract meaningful ground features from imagery. We applied thesetechniques to very high resolution multispectral Ikonos images to produce vegetationcommunity maps in Dunedin City, New Zealand. An Ikonos image was orthorectified and amulti-scale segmentation algorithm used to produce a hierarchical network of image objects.The upper level included four coarse strata: industrial/commercial (commercial buildings),residential (houses and backyard private gardens), vegetation (vegetation patches larger than0.8/1ha), and water. We focused on the vegetation stratum that was segmented at moredetailed level to extract and classify fifteen classes of vegetation communities. The firstclassification yielded a moderate overall classification accuracy (64%, κ = 0.52), which ledus to consider a simplified classification with ten vegetation classes. The overallclassification accuracy from the simplified classification was 77% with a κ value close tothe excellent range (κ = 0.74). These results compared favourably with similar studies inother environments. We conclude that this approach does not provide maps as detailed as those produced by manually interpreting aerial photographs, but it can still extract ecologically significant classes. It is an efficient way to generate accurate and detailed maps in significantly shorter time. The final map accuracy could be improved by integrating segmentation, automated and manual classification in the mapping process, especially when considering important vegetation classes with limited spectral contrast.

  3. Site Suitability Analysis for Dissemination of Salt-tolerant Rice Varieties in Southern Bangladesh

    NASA Astrophysics Data System (ADS)

    Sinha, D. D.; Singh, A. N.; Singh, U. S.

    2014-11-01

    Bangladesh is a country of 14.4 million ha geographical area and has a population density of more than 1100 persons per sq. km. Rice is the staple food crop, growing on about 72 % of the total cultivated land and continues to be the most important crop for food security of the country. A project "Sustainable Rice Seed Production and Delivery Systems for Southern Bangladesh" has been executed by the International Rice Research Institute (IRRI) in twenty southern districts of Bangladesh. These districts grow rice in about 2.9 million ha out of the country's total rice area of 11.3 million ha. The project aims at contributing to the Government of Bangladesh's efforts in improving national and household food security through enhanced and sustained productivity by using salinity-, submergence- and drought- tolerant and high yielding rice varieties. Out of the 20 project districts, 12 coastal districts are affected by the problem of soil salinity. The salt-affected area in Bangladesh has increased from about 0.83 million ha in 1973 to 1.02 million ha in 2000, and 1.05 million ha in 2009 due to the influence of cyclonic storms like "Sidr", "Laila" and others, leading to salt water intrusion in croplands. Three salinity-tolerant rice varieties have recently been bred by IRRI and field tested and released by the Bangladesh Rice Research Institute (BRRI) and Bangladesh Institute of Nuclear Agriculture (BINA). These varieties are BRRI dhan- 47 and Bina dhan-8 and - 10. However, they can tolerate soil salinity level up to EC 8-10 dSm-1, whereas the EC of soils in several areas are much higher. Therefore, a large scale dissemination of these varieties can be done only when a site suitability analysis of the area is carried out. The present study was taken up with the objective of preparing the site suitability of the salt-tolerant varieties for the salinity-affected districts of southern Bangladesh. Soil salinity map prepared by Soil Resources Development Institute of Bangladesh shows five classes of salinity. viz., non-saline with some very slight saline soil, very slightly saline with some slight saline soil, slightly saline with some moderately saline soil, strongly saline with some moderately saline soil, and very strongly saline with some strongly saline soil. The soil EC level of different classes range from 2 dSm-1 to >16 dSm-1. The soil map was geo-referenced and digitized using Arc GIS. Salinity tolerance characteristics of the rice varieties were matched with the soil characteristics shown on the map. Three suitability classes were made; soils suitable for salt-tolerant varieties, not suitable for salt-tolerant varieties due to high soil salinity, and suitable for other high yielding varieties due to slight salinity. The mauza (smallest revenue unit) boundary provided by the Bangladesh Agriculture Research Council was also geo-referenced and digitized in the same projection. Overlaying and intersecting the mauza boundary on the soil suitability map provided the suitable and not suitable mauza. A total of 4070 mauzas in the 12 salinity-affected districts were listed and maps showing suitability of mauza prepared. About 0.6 million ha out of total 0.87 million ha salinity affected area were found suitable for growing the salinity-tolerant BRRI dhan-47, Bina dhan-8 and -10 in these districts. The maps and other generated information have helped the Dept. of Agriculture Extension (DAE) of Bangladesh in large scale dissemination of seeds of the salinity-tolerant rice varieties in different districts during the past two years.

  4. Hyperspectral remote sensing exploration of carbonatite - an example from Epembe, Kunene region, Namibia

    NASA Astrophysics Data System (ADS)

    Zimmermann, Robert; Brandmeier, Melanie; Andreani, Louis; Gloaguen, Richard

    2015-04-01

    Remote sensing data can provide valuable information about ore deposits and their alteration zones at surface level. High spectral and spatial resolution of the data is essential for detailed mapping of mineral abundances and related structures. Carbonatites are well known for hosting economic enrichments in REE, Ta, Nb and P (Jones et al. 2013). These make them a preferential target for exploration for those critical elements. In this study we show how combining geomorphic, textural and spectral data improves classification result. We selected a site with a well-known occurrence in northern Namibia: the Epembe dyke. For analysis LANDSAT 8, SRTM and airborne hyperspectral (HyMap) data were chosen. The overlapping data allows a multi-scale and multi-resolution approach. Results from data analysis were validated during fieldwork in 2014. Data was corrected for atmospherical and geometrical effects. Image classification, mineral mapping and tectonic geomorphology allow a refinement of the geological map by lithological mapping in a second step. Detailed mineral abundance maps were computed using spectral unmixing techniques. These techniques are well suited to map abundances of carbonate minerals, but not to discriminate the carbonatite itself from surrounding rocks with similar spectral signatures. Thus, geometric indices were calculated using tectonic geomorphology and textures. For this purpose the TecDEM-toolbox (SHAHZAD & GLOAGUEN 2011) was applied to the SRTM-data for geomorphic analysis. Textural indices (e.g. uniformity, entropy, angular second moment) were derived from HyMap and SRTM by a grey-level co-occurrence matrix (CLAUSI 2002). The carbonatite in the study area is ridge-forming and shows a narrow linear feature in the textural bands. Spectral and geometric information were combined using kohonen Self-Organizing Maps (SOM) for unsupervised clustering. The resulting class spectra were visually compared and interpreted. Classes with similar signatures were merged according to geological context. The major conclusions are: 1. Carbonate minerals can be mapped using spectral unmixing techniques. 2. Carbonatites are associated with specific geometric pattern 3. The combination of spectral and geometric information improves classification result and reduces misclassification. References Clausi, D. A. (2002): An analysis of co-occurrence texture statistics as a function of grey-level quantization. - Canadian Journal of Remote Sensing, 28 (1), 45-62 Jones, A. P., Genge, M. and Carmody, L (2013): Carbonate Melts and Carbonatites. - Reviews in Mineralogy & Geochemistry, 75, 289-322 Shahzad, F. & Gloaguen, R. (2011): TecDEM: A MATLAB based toolbox for tectonic geomorphology, Part 2: Surface dynamics and basin analysis. - Computers and Geosciences, 37 (2), 261-271

  5. Direct optical mapping of transcription factor binding sites on field-stretched λ-DNA in nanofluidic devices

    PubMed Central

    Sriram, K. K.; Yeh, Jia-Wei; Lin, Yii-Lih; Chang, Yi-Ren; Chou, Chia-Fu

    2014-01-01

    Mapping transcription factor (TF) binding sites along a DNA backbone is crucial in understanding the regulatory circuits that control cellular processes. Here, we deployed a method adopting bioconjugation, nanofluidic confinement and fluorescence single molecule imaging for direct mapping of TF (RNA polymerase) binding sites on field-stretched single DNA molecules. Using this method, we have mapped out five of the TF binding sites of E. coli RNA polymerase to bacteriophage λ-DNA, where two promoter sites and three pseudo-promoter sites are identified with the corresponding binding frequency of 45% and 30%, respectively. Our method is quick, robust and capable of resolving protein-binding locations with high accuracy (∼ 300 bp), making our system a complementary platform to the methods currently practiced. It is advantageous in parallel analysis and less prone to false positive results over other single molecule mapping techniques such as optical tweezers, atomic force microscopy and molecular combing, and could potentially be extended to general mapping of protein–DNA interaction sites. PMID:24753422

  6. On the downscaling of actual evapotranspiration maps based on combination of MODIS and landsat-based actual evapotranspiration estimates

    USGS Publications Warehouse

    Singh, Ramesh K.; Senay, Gabriel B.; Velpuri, Naga Manohar; Bohms, Stefanie; Verdin, James P.

    2014-01-01

     Downscaling is one of the important ways of utilizing the combined benefits of the high temporal resolution of Moderate Resolution Imaging Spectroradiometer (MODIS) images and fine spatial resolution of Landsat images. We have evaluated the output regression with intercept method and developed the Linear with Zero Intercept (LinZI) method for downscaling MODIS-based monthly actual evapotranspiration (AET) maps to the Landsat-scale monthly AET maps for the Colorado River Basin for 2010. We used the 8-day MODIS land surface temperature product (MOD11A2) and 328 cloud-free Landsat images for computing AET maps and downscaling. The regression with intercept method does have limitations in downscaling if the slope and intercept are computed over a large area. A good agreement was obtained between downscaled monthly AET using the LinZI method and the eddy covariance measurements from seven flux sites within the Colorado River Basin. The mean bias ranged from −16 mm (underestimation) to 22 mm (overestimation) per month, and the coefficient of determination varied from 0.52 to 0.88. Some discrepancies between measured and downscaled monthly AET at two flux sites were found to be due to the prevailing flux footprint. A reasonable comparison was also obtained between downscaled monthly AET using LinZI method and the gridded FLUXNET dataset. The downscaled monthly AET nicely captured the temporal variation in sampled land cover classes. The proposed LinZI method can be used at finer temporal resolution (such as 8 days) with further evaluation. The proposed downscaling method will be very useful in advancing the application of remotely sensed images in water resources planning and management.

  7. The Cosmology Large Angular Scale Surveyor

    NASA Astrophysics Data System (ADS)

    Harrington, Kathleen; Marriage, Tobias; Ali, Aamir; Appel, John W.; Bennett, Charles L.; Boone, Fletcher; Brewer, Michael; Chan, Manwei; Chuss, David T.; Colazo, Felipe; Dahal, Sumit; Denis, Kevin; Dünner, Rolando; Eimer, Joseph; Essinger-Hileman, Thomas; Fluxa, Pedro; Halpern, Mark; Hilton, Gene; Hinshaw, Gary F.; Hubmayr, Johannes; Iuliano, Jeffrey; Karakla, John; McMahon, Jeff; Miller, Nathan T.; Moseley, Samuel H.; Palma, Gonzalo; Parker, Lucas; Petroff, Matthew; Pradenas, Bastián.; Rostem, Karwan; Sagliocca, Marco; Valle, Deniz; Watts, Duncan; Wollack, Edward; Xu, Zhilei; Zeng, Lingzhen

    2016-07-01

    The Cosmology Large Angular Scale Surveyor (CLASS) is a four telescope array designed to characterize relic primordial gravitational waves from in ation and the optical depth to reionization through a measurement of the polarized cosmic microwave background (CMB) on the largest angular scales. The frequencies of the four CLASS telescopes, one at 38 GHz, two at 93 GHz, and one dichroic system at 145/217 GHz, are chosen to avoid spectral regions of high atmospheric emission and span the minimum of the polarized Galactic foregrounds: synchrotron emission at lower frequencies and dust emission at higher frequencies. Low-noise transition edge sensor detectors and a rapid front-end polarization modulator provide a unique combination of high sensitivity, stability, and control of systematics. The CLASS site, at 5200 m in the Chilean Atacama desert, allows for daily mapping of up to 70% of the sky and enables the characterization of CMB polarization at the largest angular scales. Using this combination of a broad frequency range, large sky coverage, control over systematics, and high sensitivity, CLASS will observe the reionization and recombination peaks of the CMB E- and B-mode power spectra. CLASS will make a cosmic variance limited measurement of the optical depth to reionization and will measure or place upper limits on the tensor-to-scalar ratio, r, down to a level of 0.01 (95% C.L.).

  8. Concept Mapping in Science Class: A Case Study of Fifth Grade Students

    ERIC Educational Resources Information Center

    Asan, Askin

    2007-01-01

    The purpose of this research project was to determine the effects of incorporating concept mapping on the achievement of fifth grade students in science class. The study was conducted with twenty-three students at Ata Elementary School, Trabzon, Turkey. The students were tested with teacher-constructed pre- and post tests containing 20…

  9. Application of remote sensing and geographical information system in mapping forest fire risk zone at Bhadra wildlife sanctuary, India.

    PubMed

    Sowmya, S V; Somashekar, R K

    2010-11-01

    Fire is the most spectacular natural disturbance that affects the forest ecosystem composition and diversity. Fire has a devastating effect on the landscape and its impact is felt at every level of the ecosystem and it is possible to map forest fire risk zone and thereby minimize the frequency of fire. There is a need for supranational approaches that analyze wide scenarios of factors involved and global fire effects. Fires can be monitored and analyzed over large areas in a timely and cost effective manner by using satellite imagery. Also Geographical Information System (GIS) can be used effectively to demarcate the fire risk zone map. Bhadra wildlife Sanctuary located in Kamataka, India was selected for this study. Vegetation, slope, distance from roads, settlements parameters were derived for a study area using topographic maps and field information. The Remote Sensing (RS) and Geographical Information System (GIS)-based forest fire risk model of the study area appeared to be highly compatible with the actual fire-affected sites. The temporal satellite data from 1989 to2006 have been analyzed to map the burnt areas. These classes were weighted according to their influence on forest fire. Four categories of fire risk regions such as Low, Moderate, High and Very high fire intensity zones were identified. It is predicted that around 10.31% of the area falls undermoderate risk zone.

  10. Object-based analysis of multispectral airborne laser scanner data for land cover classification and map updating

    NASA Astrophysics Data System (ADS)

    Matikainen, Leena; Karila, Kirsi; Hyyppä, Juha; Litkey, Paula; Puttonen, Eetu; Ahokas, Eero

    2017-06-01

    During the last 20 years, airborne laser scanning (ALS), often combined with passive multispectral information from aerial images, has shown its high feasibility for automated mapping processes. The main benefits have been achieved in the mapping of elevated objects such as buildings and trees. Recently, the first multispectral airborne laser scanners have been launched, and active multispectral information is for the first time available for 3D ALS point clouds from a single sensor. This article discusses the potential of this new technology in map updating, especially in automated object-based land cover classification and change detection in a suburban area. For our study, Optech Titan multispectral ALS data over a suburban area in Finland were acquired. Results from an object-based random forests analysis suggest that the multispectral ALS data are very useful for land cover classification, considering both elevated classes and ground-level classes. The overall accuracy of the land cover classification results with six classes was 96% compared with validation points. The classes under study included building, tree, asphalt, gravel, rocky area and low vegetation. Compared to classification of single-channel data, the main improvements were achieved for ground-level classes. According to feature importance analyses, multispectral intensity features based on several channels were more useful than those based on one channel. Automatic change detection for buildings and roads was also demonstrated by utilising the new multispectral ALS data in combination with old map vectors. In change detection of buildings, an old digital surface model (DSM) based on single-channel ALS data was also used. Overall, our analyses suggest that the new data have high potential for further increasing the automation level in mapping. Unlike passive aerial imaging commonly used in mapping, the multispectral ALS technology is independent of external illumination conditions, and there are no shadows on intensity images produced from the data. These are significant advantages in developing automated classification and change detection procedures.

  11. Definition of spectrally separable classes for soil survey research

    NASA Technical Reports Server (NTRS)

    Cipra, J. E.; Swain, P. H.; Gill, J. H.; Baumgardner, M. F.; Kristof, S. J.

    1972-01-01

    A procedure is outlined for defining spectral classes such that the differences between classes can be quantified. It also facilitates determination of a number of classes such that the classes are spectrally discriminable. This is accomplished by partitioning the data into many classes and then combining similar spectral classes on the basis of appropriate criteria. Multispectral data were collected over a 12-mile flightline in White County, Indiana, in connection with the 1971 Corn Blight Watch Experiment. Data were collected in May by the University of Michigan airborne scanning spectrometer at an altitude of 5000 feet. Spectral maps resulting from the analysis were compared to existing soil surveys of the National Cooperative Soil Survey. The method should help determine the extent to which spectral properties of soil surfaces can be associated with morphologic and topographic differences of interest to soil surveyors engaged in operational soil mapping.

  12. Monitoring of heavy flooding by orbital remote sensing: The example of the Doce river valley. [Doce River Valley, Brazil

    NASA Technical Reports Server (NTRS)

    Dejesusparada, N. (Principal Investigator); Novo, E. M. L. D.; Dossantos, A. P.

    1981-01-01

    The application of temporal LANDSAT data to study floods was verified, and the natural features responsible for this phenomenon were surveyed using the Doce river valley as a test site, because of the catastrophic (1978-1979) flood. Data from LANDSAT images and CCT's were used. Geomorphical mapping evaluated morphostructural features. Seven and nine classes of water surfaces for dry and rainy seasons were analyzed. The magnitude of the changes from preflood to postflood stage are estimated. The single Pixel program was applied to correlate the drainage basin characteristics to the grey level of LANDSAT data.

  13. Gates to Gregg High Voltage Transmission Line Study. [California

    NASA Technical Reports Server (NTRS)

    Bergis, V.; Maw, K.; Newland, W.; Sinnott, D.; Thornbury, G.; Easterwood, P.; Bonderud, J.

    1982-01-01

    The usefulness of LANDSAT data in the planning of transmission line routes was assessed. LANDSAT digital data and image processing techniques, specifically a multi-date supervised classification aproach, were used to develop a land cover map for an agricultural area near Fresno, California. Twenty-six land cover classes were identified, of which twenty classes were agricultural crops. High classification accuracies (greater than 80%) were attained for several classes, including cotton, grain, and vineyards. The primary products generated were 1:24,000, 1:100,000 and 1:250,000 scale maps of the classification and acreage summaries for all land cover classes within four alternate transmission line routes.

  14. PPF Dependent Fixed Point Results for Triangular α c-Admissible Mappings

    PubMed Central

    Ćirić, Ljubomir; Alsulami, Saud M.; Salimi, Peyman

    2014-01-01

    We introduce the concept of triangular α c-admissible mappings (pair of mappings) with respect to η c nonself-mappings and establish the existence of PPF dependent fixed (coincidence) point theorems for contraction mappings involving triangular α c-admissible mappings (pair of mappings) with respect to η c nonself-mappings in Razumikhin class. Several interesting consequences of our theorems are also given. PMID:24672352

  15. The Rock Engineering System (RES) applied to landslide susceptibility zonation of the northeastern flank of Etna: methodological approach and results

    NASA Astrophysics Data System (ADS)

    Apuani, Tiziana; Corazzato, Claudia

    2015-04-01

    Ground deformations in the northeastern flank of Etna are well known. Despite only a few landslide events have been documented, these have significantly involved and damaged lifelines and buildings. These events are mainly related to the activity of the volcano-tectonic structures and associated seismicity, as in the case of the 2002 reactivation of the Presa landslide during an increased activity of the Pernicana fault system. In order to highlight the areal distribution of potentially unstable slopes based on a detailed, site-specific study of the factors responsible for landslide, and to ultimately contribute to risk management, a landslide susceptibility analysis of the northeastern flank of Etna in the Pernicana area was carried out, and a susceptibility map at 1:10.000 scale was produced, extending over an area of 168 km2. Different methods are proposed in the literature to obtain the regional distribution of potentially unstable slopes, depending on the problem scale, the slope dynamic evolution in the geological context, and the availability of data. Among semi-quantitative approaches, the present research combines the Rock Engineering System (RES) methodology with parameter zonation mapping in a GIS environment. The RES method represents a structured approach to manage a high number of interacting factors involved in the instability problem. A numerically coded, site-specific interaction matrix (IM) analyzes the cause-effect relationship in these factors, and calculates the degree of interactivity of each parameter, normalized by the overall interactivity of the system (weight factor). In the specific Etna case, the considered parameters are: slope attitude, lithotechnical properties (lithology, structural complexity, soil and rock mass quality), land use, tectonic structures, seismic activity (horizontal acceleration) and hydrogeological conditions (groundwater and drainage). Thematic maps are prepared at 1:10.000 scale for each of these parameters, and instability-related numerical ratings are assigned to classes. An instability index map is then produced by assigning, to each areal elementary cell (in our case a 10 m pixel), the sum of the products of each weight factor to the normalized parameter rating coming from each input zonation map. This map is then opportunely classified in landslide susceptibility classes (expressed as a percentage), enabling to discriminate areas prone to instability. Overall, the study area is characterized by a low propensity to slope instability. Few areas have an instability index of more than 45% of the theoretical maximum imposed by the matrix. These are located in the few steep slopes associated with active faults, and strongly depending on the seismic activity. Some other areas correspond to limited outcrops characterized by significantly reduced lithotechnical properties (low shear strength). The produced susceptibility map combines the application of the RES with the parameter zonation, following methodology which had never been applied up to now in in active volcanic environments. The comparison of the results with the ground deformation evidence coming from monitoring networks suggests the validity of the approach.

  16. Semantic Web-based digital, field and virtual geological

    NASA Astrophysics Data System (ADS)

    Babaie, H. A.

    2012-12-01

    Digital, field and virtual Semantic Web-based education (SWBE) of geological mapping requires the construction of a set of searchable, reusable, and interoperable digital learning objects (LO) for learners, teachers, and authors. These self-contained units of learning may be text, image, or audio, describing, for example, how to calculate the true dip of a layer from two structural contours or find the apparent dip along a line of section. A collection of multi-media LOs can be integrated, through domain and task ontologies, with mapping-related learning activities and Web services, for example, to search for the description of lithostratigraphic units in an area, or plotting orientation data on stereonet. Domain ontologies (e.g., GeologicStructure, Lithostratigraphy, Rock) represent knowledge in formal languages (RDF, OWL) by explicitly specifying concepts, relations, and theories involved in geological mapping. These ontologies are used by task ontologies that formalize the semantics of computational tasks (e.g., measuring the true thickness of a formation) and activities (e.g., construction of cross section) for all actors to solve specific problems (making map, instruction, learning support, authoring). A SWBE system for geological mapping should also involve ontologies to formalize teaching strategy (pedagogical styles), learner model (e.g., for student performance, personalization of learning), interface (entry points for activities of all actors), communication (exchange of messages among different components and actors), and educational Web services (for interoperability). In this ontology-based environment, actors interact with the LOs through educational servers, that manage (reuse, edit, delete, store) ontologies, and through tools which communicate with Web services to collect resources and links to other tools. Digital geological mapping involves a location-based, spatial organization of geological elements in a set of GIS thematic layers. Each layer in the stack assembles a set of polygonal (e.g., formation, member, intrusion), linear (e.g., fault, contact), and/or point (e.g., sample or measurement site) geological elements. These feature classes, represented in domain ontologies by classes, have their own sets of property (attribute, association relation) and topological (e.g., overlap, adjacency, containment), and network (cross-cuttings; connectivity) relationships. Since geological mapping involves describing and depicting different aspects of each feature class (e.g., contact, formation, structure), the same geographic region may be investigated by different communities, for example, for its stratigraphy, rock type, structure, soil type, and isotopic and paleontological age, using sets of ontologies. These data can become interconnected applying the Semantic Web technologies, on the Linked Open Data Cloud, based on their underlying common geographic coordinates. Sets of geological data published on the Cloud will include multiple RDF links to Cloud's geospatial nodes such as GeoNames and Linked GeoData. During mapping, a device such as smartphone, laptop, or iPad, with GPS and GIS capability and a DBpedia Mobile client, can use the current position to discover and query all the geological linked data, and add new data to the thematic layers and publish them to the Cloud.

  17. What Do Pre-Service Physics Teachers Know and Think about Concept Mapping?

    ERIC Educational Resources Information Center

    Didis, Nilüfer; Özcan, Özgür; Azar, Ali

    2014-01-01

    In order to use concept maps in physics classes effectively, teachers' knowledge and ideas about concept mapping are as important as the physics knowledge used in mapping. For this reason, we aimed to examine pre-service physics teachers' knowledge on concept mapping, their ideas about the implementation of concept mapping in physics…

  18. Statewide LANDSAT inventory of California forests

    NASA Technical Reports Server (NTRS)

    Likens, W.; Peterson, D. (Principal Investigator)

    1981-01-01

    Six forest cover categories were mapped, along with 10 general land cover classes. To map the state's 100 million acres, 1.6 acre mapping units were utilized. Map products were created. Standing forest acreage for the state was computed to be 26.8 million acres.

  19. Peatland classification of West Siberia based on Landsat imagery

    NASA Astrophysics Data System (ADS)

    Terentieva, I.; Glagolev, M.; Lapshina, E.; Maksyutov, S. S.

    2014-12-01

    Increasing interest in peatlands for prediction of environmental changes requires an understanding of its geographical distribution. West Siberia Plain is the biggest peatland area in Eurasia and is situated in the high latitudes experiencing enhanced rate of climate change. West Siberian taiga mires are important globally, accounting for about 12.5% of the global wetland area. A number of peatland maps of the West Siberia was developed in 1970s, but their accuracy is limited. Here we report the effort in mapping West Siberian peatlands using 30 m resolution Landsat imagery. As a first step, peatland classification scheme oriented on environmental parameter upscaling was developed. The overall workflow involves data pre-processing, training data collection, image classification on a scene-by-scene basis, regrouping of the derived classes into final peatland types and accuracy assessment. To avoid misclassification peatlands were distinguished from other landscapes using threshold method: for each scene, Green-Red Vegetation Indices was used for peatland masking and 5th channel was used for masking water bodies. Peatland image masks were made in Quantum GIS, filtered in MATLAB and then classified in Multispec (Purdue Research Foundation) using maximum likelihood algorithm of supervised classification method. Training sample selection was mostly based on spectral signatures due to limited ancillary and high-resolution image data. As an additional source of information, we applied our field knowledge resulting from more than 10 years of fieldwork in West Siberia summarized in an extensive dataset of botanical relevés, field photos, pH and electrical conductivity data from 40 test sites. After the classification procedure, discriminated spectral classes were generalized into 12 peatland types. Overall accuracy assessment was based on 439 randomly assigned test sites showing final map accuracy was 80%. Total peatland area was estimated at 73.0 Mha. Various ridge-hollow and ridge-hollow-pool bog complexes prevail here occupying 34.5 Mha. They are followed by lakes (11.1 Mha), fens (10.7 Mha), pine-dwarf-shrub sphagnum bogs (9.3 Mha) and palsa complexes (7.4 Mha).

  20. 40 CFR 146.82 - Required Class VI permit information.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ..., Class II, or Class V experimental wells, certain maps, cross-sections, tabulations of wells within the.../facies changes based on field data which may include geologic cores, outcrop data, seismic surveys, well...

  1. 40 CFR 146.82 - Required Class VI permit information.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ..., Class II, or Class V experimental wells, certain maps, cross-sections, tabulations of wells within the.../facies changes based on field data which may include geologic cores, outcrop data, seismic surveys, well...

  2. 40 CFR 146.82 - Required Class VI permit information.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ..., Class II, or Class V experimental wells, certain maps, cross-sections, tabulations of wells within the.../facies changes based on field data which may include geologic cores, outcrop data, seismic surveys, well...

  3. 40 CFR 146.82 - Required Class VI permit information.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ..., Class II, or Class V experimental wells, certain maps, cross-sections, tabulations of wells within the.../facies changes based on field data which may include geologic cores, outcrop data, seismic surveys, well...

  4. Logarithmic r-θ mapping for hybrid optical neural network filter for multiple objects recognition within cluttered scenes

    NASA Astrophysics Data System (ADS)

    Kypraios, Ioannis; Young, Rupert C. D.; Chatwin, Chris R.; Birch, Phil M.

    2009-04-01

    θThe window unit in the design of the complex logarithmic r-θ mapping for hybrid optical neural network filter can allow multiple objects of the same class to be detected within the input image. Additionally, the architecture of the neural network unit of the complex logarithmic r-θ mapping for hybrid optical neural network filter becomes attractive for accommodating the recognition of multiple objects of different classes within the input image by modifying the output layer of the unit. We test the overall filter for multiple objects of the same and of different classes' recognition within cluttered input images and video sequences of cluttered scenes. Logarithmic r-θ mapping for hybrid optical neural network filter is shown to exhibit with a single pass over the input data simultaneously in-plane rotation, out-of-plane rotation, scale, log r-θ map translation and shift invariance, and good clutter tolerance by recognizing correctly the different objects within the cluttered scenes. We record in our results additional extracted information from the cluttered scenes about the objects' relative position, scale and in-plane rotation.

  5. Language Mapping with Navigated Repetitive TMS: Proof of Technique and Validation

    PubMed Central

    Tarapore, Phiroz E.; Findlay, Anne M.; Honma, Susanne M.; Mizuiri, Danielle; Houde, John F.; Berger, Mitchel S.; Nagarajan, Srikantan S.

    2013-01-01

    Objective Lesion-based mapping of speech pathways has been possible only during invasive neurosurgical procedures using direct cortical stimulation (DCS). However, navigated transcranial magnetic stimulation (nTMS) may allow for lesion-based interrogation of language pathways noninvasively. Although not lesion-based, magnetoencephalographic imaging (MEGI) is another noninvasive modality for language mapping. In this study, we compare the accuracy of nTMS and MEGI with DCS. Methods Subjects with lesions around cortical language areas underwent preoperative nTMS and MEGI for language mapping. nTMS maps were generated using a repetitive TMS protocol to deliver trains of stimulations during a picture naming task. MEGI activation maps were derived from adaptive spatial filtering of beta-band power decreases prior to overt speech during picture naming and verb generation tasks. The subjects subsequently underwent awake language mapping via intraoperative DCS. The language maps obtained from each of the 3 modalities were recorded and compared. Results nTMS and MEGI were performed on 12 subjects. nTMS yielded 21 positive language disruption sites (11 speech arrest, 5 anomia, and 5 other) while DCS yielded 10 positive sites (2 speech arrest, 5 anomia, and 3 other). MEGI isolated 32 sites of peak activation with language tasks. Positive language sites were most commonly found in the pars opercularis for all three modalities. In 9 instances the positive DCS site corresponded to a positive nTMS site, while in 1 instance it did not. In 4 instances, a positive nTMS site corresponded to a negative DCS site, while 169 instances of negative nTMS and DCS were recorded. The sensitivity of nTMS was therefore 90%, specificity was 98%, the positive predictive value was 69% and the negative predictive value was 99% as compared with intraoperative DCS. MEGI language sites for verb generation and object naming correlated with nTMS sites in 5 subjects, and with DCS sites in 2 subjects. Conclusion Maps of language function generated with nTMS correlate well with those generated by DCS. Negative nTMS mapping also correlates with negative DCS mapping. In our study, MEGI lacks the same level of correlation with intraoperative mapping; nevertheless it provides useful adjunct information in some cases. nTMS may offer a lesion-based method for noninvasively interrogating language pathways and be valuable in managing patients with peri-eloquent lesions. PMID:23702420

  6. SfiI genomic cleavage map of Escherichia coli K-12 strain MG1655.

    PubMed Central

    Perkins, J D; Heath, J D; Sharma, B R; Weinstock, G M

    1992-01-01

    An SfiI restriction map of Escherichia coli K-12 strain MG1655 is presented. The map contains thirty-one cleavage sites separating fragments ranging in size from 407 kb to 3.7 kb. Several techniques were used in the construction of this map, including CHEF pulsed field gel electrophoresis; physical analysis of a set of twenty-six auxotrophic transposon insertions; correlation with the restriction map of Kohara and coworkers using the commercially available E. coli Gene Mapping Membranes; analysis of publicly available sequence information; and correlation of the above data with the combined genetic and physical map developed by Rudd, et al. The combination of these techniques has yielded a map in which all but one site can be localized within a range of +/- 2 kb, and over half the sites can be localized precisely by sequence data. Two sites present in the EcoSeq5 sequence database are not cleaved in MG1655 and four sites are noted to be sensitive to methylation by the dcm methylase. This map, combined with the NotI physical map of MG1655, can aid in the rapid, precise mapping of several different types of genetic alterations, including transposon mediated mutations and other insertions, inversions, deletions and duplications. Images PMID:1312707

  7. Qualitative landslide susceptibility assessment by multicriteria analysis: A case study from San Antonio del Sur, Guantánamo, Cuba

    NASA Astrophysics Data System (ADS)

    Castellanos Abella, Enrique A.; Van Westen, Cees J.

    Geomorphological information can be combined with decision-support tools to assess landslide hazard and risk. A heuristic model was applied to a rural municipality in eastern Cuba. The study is based on a terrain mapping units (TMU) map, generated at 1:50,000 scale by interpretation of aerial photos, satellite images and field data. Information describing 603 terrain units was collected in a database. Landslide areas were mapped in detail to classify the different failure types and parts. Three major landslide regions are recognized in the study area: coastal hills with rockfalls, shallow debris flows and old rotational rockslides denudational slopes in limestone, with very large deep-seated rockslides related to tectonic activity and the Sierra de Caujerí scarp, with large rockslides. The Caujerí scarp presents the highest hazard, with recent landslides and various signs of active processes. The different landforms and the causative factors for landslides were analyzed and used to develop the heuristic model. The model is based on weights assigned by expert judgment and organized in a number of components such as slope angle, internal relief, slope shape, geological formation, active faults, distance to drainage, distance to springs, geomorphological subunits and existing landslide zones. From these variables a hierarchical heuristic model was applied in which three levels of weights were designed for classes, variables, and criteria. The model combines all weights into a single hazard value for each pixel of the landslide hazard map. The hazard map was then divided by two scales, one with three classes for disaster managers and one with 10 detailed hazard classes for technical staff. The range of weight values and the number of existing landslides is registered for each class. The resulting increasing landslide density with higher hazard classes indicates that the output map is reliable. The landslide hazard map was used in combination with existing information on buildings and infrastructure to prepare a qualitative risk map. The complete lack of historical landslide information and geotechnical data precludes the development of quantitative deterministic or probabilistic models.

  8. 39 CFR 242.2 - Change of site-fourth-class offices.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 39 Postal Service 1 2010-07-01 2010-07-01 false Change of site-fourth-class offices. 242.2 Section 242.2 Postal Service UNITED STATES POSTAL SERVICE ORGANIZATION AND ADMINISTRATION CHANGE OF SITE § 242.2 Change of site—fourth-class offices. Report by memorandum to chief, organization and management branch, when change in site is necessary....

  9. 47 CFR 73.4108 - FM transmitter site map submissions.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 47 Telecommunication 4 2011-10-01 2011-10-01 false FM transmitter site map submissions. 73.4108 Section 73.4108 Telecommunication FEDERAL COMMUNICATIONS COMMISSION (CONTINUED) BROADCAST RADIO SERVICES RADIO BROADCAST SERVICES Rules Applicable to All Broadcast Stations § 73.4108 FM transmitter site map...

  10. Making Large Class Basic Histology Lectures More Interactive: The Use of Draw-Along Mapping Techniques and Associated Educational Activities

    ERIC Educational Resources Information Center

    Kotzé, Sanet Henriët; Mole, Calvin Gerald

    2015-01-01

    At Stellenbosch University, South Africa, basic histology is taught to a combination class of almost 400 first-year medical, physiotherapy, and dietetic students. Many students often find the amount of work in basic histology lectures overwhelming and consequently loose interest. The aim was to determine if a draw-along mapping activity would…

  11. Examining the Fifth Graders' Understanding of Heat and Temperature Concepts via Concept Mapping

    ERIC Educational Resources Information Center

    Cakir Olgun, Ozlem Sila

    2008-01-01

    This study investigated the effect of concept mapping over traditional instruction on students' understanding and retention of heat and temperature concepts. The sample of this study consisted of 5th grade students from two classes of a elementary school (n=75). One intact class was randomly assigned to the comparison group whereas the other one…

  12. A statistically valid method for using FIA plots to guide spectral class rejection in producing stratification maps

    Treesearch

    Michael L. Hoppus; Andrew J. Lister

    2002-01-01

    A Landsat TM classification method (iterative guided spectral class rejection) produced a forest cover map of southern West Virginia that provided the stratification layer for producing estimates of timberland area from Forest Service FIA ground plots using a stratified sampling technique. These same high quality and expensive FIA ground plots provided ground reference...

  13. Classification of wetlands vegetation using small scale color infrared imagery

    NASA Technical Reports Server (NTRS)

    Williamson, F. S. L.

    1975-01-01

    A classification system for Chesapeake Bay wetlands was derived from the correlation of film density classes and actual vegetation classes. The data processing programs used were developed by the Laboratory for the Applications of Remote Sensing. These programs were tested for their value in classifying natural vegetation, using digitized data from small scale aerial photography. Existing imagery and the vegetation map of Farm Creek Marsh were used to determine the optimal number of classes, and to aid in determining if the computer maps were a believable product.

  14. The Environmental Assessment and Management (TEAM) Guide; Rhode Island Supplement, Revised March 1998

    DTIC Science & Technology

    1998-03-01

    Verify that Class I Landfills are located only in "till" areas as identified on the groundwater maps prepared by the U.S. Geological Survey and...are located in either "till" areas or "outwash" areas as identified on the groundwater maps prepared by the U.S. Geological Survey and are of the...groundwater maps prepared by the U.S. Geological Survey . Verify that Class I Landfills do not accept: - Type 6-Extremely Hazardous Waste - Type 2A--Highly

  15. Class imbalance in unsupervised change detection - A diagnostic analysis from urban remote sensing

    NASA Astrophysics Data System (ADS)

    Leichtle, Tobias; Geiß, Christian; Lakes, Tobia; Taubenböck, Hannes

    2017-08-01

    Automatic monitoring of changes on the Earth's surface is an intrinsic capability and simultaneously a persistent methodological challenge in remote sensing, especially regarding imagery with very-high spatial resolution (VHR) and complex urban environments. In order to enable a high level of automatization, the change detection problem is solved in an unsupervised way to alleviate efforts associated with collection of properly encoded prior knowledge. In this context, this paper systematically investigates the nature and effects of class distribution and class imbalance in an unsupervised binary change detection application based on VHR imagery over urban areas. For this purpose, a diagnostic framework for sensitivity analysis of a large range of possible degrees of class imbalance is presented, which is of particular importance with respect to unsupervised approaches where the content of images and thus the occurrence and the distribution of classes are generally unknown a priori. Furthermore, this framework can serve as a general technique to evaluate model transferability in any two-class classification problem. The applied change detection approach is based on object-based difference features calculated from VHR imagery and subsequent unsupervised two-class clustering using k-means, genetic k-means and self-organizing map (SOM) clustering. The results from two test sites with different structural characteristics of the built environment demonstrated that classification performance is generally worse in imbalanced class distribution settings while best results were reached in balanced or close to balanced situations. Regarding suitable accuracy measures for evaluating model performance in imbalanced settings, this study revealed that the Kappa statistics show significant response to class distribution while the true skill statistic was widely insensitive to imbalanced classes. In general, the genetic k-means clustering algorithm achieved the most robust results with respect to class imbalance while the SOM clustering exhibited a distinct optimization towards a balanced distribution of classes.

  16. statement of significance, location map, site plan, landscape plan, site ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    statement of significance, location map, site plan, landscape plan, site sections, evolution of cemetery landscape. - San Francisco National Cemetery, 1 Lincoln Boulevard, San Francisco, San Francisco County, CA

  17. Advantages of geographically weighted regression for modeling benthic substrate in two Greater Yellowstone Ecosystem streams

    USGS Publications Warehouse

    Sheehan, Kenneth R.; Strager, Michael P.; Welsh, Stuart A.

    2013-01-01

    Stream habitat assessments are commonplace in fish management, and often involve nonspatial analysis methods for quantifying or predicting habitat, such as ordinary least squares regression (OLS). Spatial relationships, however, often exist among stream habitat variables. For example, water depth, water velocity, and benthic substrate sizes within streams are often spatially correlated and may exhibit spatial nonstationarity or inconsistency in geographic space. Thus, analysis methods should address spatial relationships within habitat datasets. In this study, OLS and a recently developed method, geographically weighted regression (GWR), were used to model benthic substrate from water depth and water velocity data at two stream sites within the Greater Yellowstone Ecosystem. For data collection, each site was represented by a grid of 0.1 m2 cells, where actual values of water depth, water velocity, and benthic substrate class were measured for each cell. Accuracies of regressed substrate class data by OLS and GWR methods were calculated by comparing maps, parameter estimates, and determination coefficient r 2. For analysis of data from both sites, Akaike’s Information Criterion corrected for sample size indicated the best approximating model for the data resulted from GWR and not from OLS. Adjusted r 2 values also supported GWR as a better approach than OLS for prediction of substrate. This study supports GWR (a spatial analysis approach) over nonspatial OLS methods for prediction of habitat for stream habitat assessments.

  18. Regional mapping of hydrothermally altered igneous rocks along the Urumieh-Dokhtar, Chagai, and Alborz Belts of western Asia using Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) data and Interactive Data Language (IDL) logical operators: a tool for porphyry copper exploration and assessment: Chapter O in Global mineral resource assessment

    USGS Publications Warehouse

    Mars, John L.; Zientek, M.L.; Hammarstrom, J.M.; Johnson, K.M.; Pierce, F.W.

    2014-01-01

    The ASTER alteration map and corresponding geologic maps were used to select circular to elliptical patterns of argillic- and phyllic-altered volcanic and intrusive rocks as potential porphyry copper sites. One hundred and seventy eight potential porphyry copper sites were mapped along the UDVB, and 23 sites were mapped along the CVB. The potential sites were selected to assist in further exploration and assessments of undiscovered porphyry copper deposits.

  19. An Inquiry-Oriented Curriculum in Map Making and Map Interpretation for the Intermediate Grades.

    ERIC Educational Resources Information Center

    Janeway, W. Whitney

    This publication contains class activities and provocative inquiry questions for intermediate-grade teachers to use to involve students in map making and map interpretation. The author believes that the only things that are needed to develop an inquiry-oriented unit on mapping are a good map, a small group of students, and a perceptive teacher who…

  20. Geodatabase of sites, basin boundaries, and topology rules used to store drainage basin boundaries for the U.S. Geological Survey, Colorado Water Science Center

    USGS Publications Warehouse

    Dupree, Jean A.; Crowfoot, Richard M.

    2012-01-01

    This geodatabase and its component datasets are part of U.S. Geological Survey Digital Data Series 650 and were generated to store basin boundaries for U.S. Geological Survey streamgages and other sites in Colorado. The geodatabase and its components were created by the U.S. Geological Survey, Colorado Water Science Center, and are used to derive the numeric drainage areas for Colorado that are input into the U.S. Geological Survey's National Water Information System (NWIS) database and also published in the Annual Water Data Report and on NWISWeb. The foundational dataset used to create the basin boundaries in this geodatabase was the National Watershed Boundary Dataset. This geodatabase accompanies a U.S. Geological Survey Techniques and Methods report (Book 11, Section C, Chapter 6) entitled "Digital Database Architecture and Delineation Methodology for Deriving Drainage Basins, and Comparison of Digitally and Non-Digitally Derived Numeric Drainage Areas." The Techniques and Methods report details the geodatabase architecture, describes the delineation methodology and workflows used to develop these basin boundaries, and compares digitally derived numeric drainage areas in this geodatabase to non-digitally derived areas. 1. COBasins.gdb: This geodatabase contains site locations and basin boundaries for Colorado. It includes a single feature dataset, called BasinsFD, which groups the component feature classes and topology rules. 2. BasinsFD: This feature dataset in the "COBasins.gdb" geodatabase is a digital container that holds the feature classes used to archive site locations and basin boundaries as well as the topology rules that govern spatial relations within and among component feature classes. This feature dataset includes three feature classes: the sites for which basins have been delineated (the "Sites" feature class), basin bounding lines (the "BasinLines" feature class), and polygonal basin areas (the "BasinPolys" feature class). The feature dataset also stores the topology rules (the "BasinsFD_Topology") that constrain the relations within and among component feature classes. The feature dataset also forces any feature classes inside it to have a consistent projection system, which is, in this case, an Albers-Equal-Area projection system. 3. BasinsFD_Topology: This topology contains four persistent topology rules that constrain the spatial relations within the "BasinLines" feature class and between the "BasinLines" feature class and the "BasinPolys" feature classes. 4. Sites: This point feature class contains the digital representations of the site locations for which Colorado Water Science Center basin boundaries have been delineated. This feature class includes point locations for Colorado Water Science Center active (as of September 30, 2009) gages and for other sites. 5. BasinLines: This line feature class contains the perimeters of basins delineated for features in the "Sites" feature class, and it also contains information regarding the sources of lines used for the basin boundaries. 6. BasinPolys: This polygon feature class contains the polygonal basin areas delineated for features in the "Sites" feature class, and it is used to derive the numeric drainage areas published by the Colorado Water Science Center.

  1. Building Damage Assessment after Earthquake Using Post-Event LiDAR Data

    NASA Astrophysics Data System (ADS)

    Rastiveis, H.; Eslamizade, F.; Hosseini-Zirdoo, E.

    2015-12-01

    After an earthquake, damage assessment plays an important role in leading rescue team to help people and decrease the number of mortality. Damage map is a map that demonstrates collapsed buildings with their degree of damage. With this map, finding destructive buildings can be quickly possible. In this paper, we propose an algorithm for automatic damage map generation after an earthquake using post-event LiDAR Data and pre-event vector map. The framework of the proposed approach has four main steps. To find the location of all buildings on LiDAR data, in the first step, LiDAR data and vector map are registered by using a few number of ground control points. Then, building layer, selected from vector map, are mapped on the LiDAR data and all pixels which belong to the buildings are extracted. After that, through a powerful classifier all the extracted pixels are classified into three classes of "debris", "intact building" and "unclassified". Since textural information make better difference between "debris" and "intact building" classes, different textural features are applied during the classification. After that, damage degree for each candidate building is estimated based on the relation between the numbers of pixels labelled as "debris" class to the whole building area. Calculating the damage degree for each candidate building, finally, building damage map is generated. To evaluate the ability proposed method in generating damage map, a data set from Port-au-Prince, Haiti's capital after the 2010 Haiti earthquake was used. In this case, after calculating of all buildings in the test area using the proposed method, the results were compared to the damage degree which estimated through visual interpretation of post-event satellite image. Obtained results were proved the reliability of the proposed method in damage map generation using LiDAR data.

  2. Phenological classification of the United States: A geographic framework for extending multi-sensor time-series data

    USGS Publications Warehouse

    Gu, Yingxin; Brown, Jesslyn F.; Miura, Tomoaki; van Leeuwen, Willem J.D.; Reed, Bradley C.

    2010-01-01

    This study introduces a new geographic framework, phenological classification, for the conterminous United States based on Moderate Resolution Imaging Spectroradiometer (MODIS) Normalized Difference Vegetation Index (NDVI) time-series data and a digital elevation model. The resulting pheno-class map is comprised of 40 pheno-classes, each having unique phenological and topographic characteristics. Cross-comparison of the pheno-classes with the 2001 National Land Cover Database indicates that the new map contains additional phenological and climate information. The pheno-class framework may be a suitable basis for the development of an Advanced Very High Resolution Radiometer (AVHRR)-MODIS NDVI translation algorithm and for various biogeographic studies.

  3. Seismic Hazard Maps for Seattle, Washington, Incorporating 3D Sedimentary Basin Effects, Nonlinear Site Response, and Rupture Directivity

    USGS Publications Warehouse

    Frankel, Arthur D.; Stephenson, William J.; Carver, David L.; Williams, Robert A.; Odum, Jack K.; Rhea, Susan

    2007-01-01

    This report presents probabilistic seismic hazard maps for Seattle, Washington, based on over 500 3D simulations of ground motions from scenario earthquakes. These maps include 3D sedimentary basin effects and rupture directivity. Nonlinear site response for soft-soil sites of fill and alluvium was also applied in the maps. The report describes the methodology for incorporating source and site dependent amplification factors into a probabilistic seismic hazard calculation. 3D simulations were conducted for the various earthquake sources that can affect Seattle: Seattle fault zone, Cascadia subduction zone, South Whidbey Island fault, and background shallow and deep earthquakes. The maps presented in this document used essentially the same set of faults and distributed-earthquake sources as in the 2002 national seismic hazard maps. The 3D velocity model utilized in the simulations was validated by modeling the amplitudes and waveforms of observed seismograms from five earthquakes in the region, including the 2001 M6.8 Nisqually earthquake. The probabilistic seismic hazard maps presented here depict 1 Hz response spectral accelerations with 10%, 5%, and 2% probabilities of exceedance in 50 years. The maps are based on determinations of seismic hazard for 7236 sites with a spacing of 280 m. The maps show that the most hazardous locations for this frequency band (around 1 Hz) are soft-soil sites (fill and alluvium) within the Seattle basin and along the inferred trace of the frontal fault of the Seattle fault zone. The next highest hazard is typically found for soft-soil sites in the Duwamish Valley south of the Seattle basin. In general, stiff-soil sites in the Seattle basin exhibit higher hazard than stiff-soil sites outside the basin. Sites with shallow bedrock outside the Seattle basin have the lowest estimated hazard for this frequency band.

  4. Automatic mapping of event landslides at basin scale in Taiwan using a Montecarlo approach and synthetic land cover fingerprints

    NASA Astrophysics Data System (ADS)

    Mondini, Alessandro C.; Chang, Kang-Tsung; Chiang, Shou-Hao; Schlögel, Romy; Notarnicola, Claudia; Saito, Hitoshi

    2017-12-01

    We propose a framework to systematically generate event landslide inventory maps from satellite images in southern Taiwan, where landslides are frequent and abundant. The spectral information is used to assess the pixel land cover class membership probability through a Maximum Likelihood classifier trained with randomly generated synthetic land cover spectral fingerprints, which are obtained from an independent training images dataset. Pixels are classified as landslides when the calculated landslide class membership probability, weighted by a susceptibility model, is higher than membership probabilities of other classes. We generated synthetic fingerprints from two FORMOSAT-2 images acquired in 2009 and tested the procedure on two other images, one in 2005 and the other in 2009. We also obtained two landslide maps through manual interpretation. The agreement between the two sets of inventories is given by the Cohen's k coefficients of 0.62 and 0.64, respectively. This procedure can now classify a new FORMOSAT-2 image automatically facilitating the production of landslide inventory maps.

  5. Waste Information Management System: One Year After Web Deployment

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Shoffner, P.A.; Geisler, T.J.; Upadhyay, H.

    2008-07-01

    The implementation of the Department of Energy (DOE) mandated accelerated cleanup program created significant potential technical impediments. The schedule compression required close coordination and a comprehensive review and prioritization of the barriers that impeded treatment and disposition of the waste streams at each site. Many issues related to site waste treatment and disposal were potential critical path issues under the accelerated schedules. In order to facilitate accelerated cleanup initiatives, waste managers at DOE field sites and at DOE Headquarters in Washington, D.C., needed timely waste forecast information regarding the volumes and types of waste that would be generated by DOEmore » sites over the next 30 years. Each local DOE site has historically collected, organized, and displayed site waste forecast information in separate and unique systems. However, waste information from all sites needed a common application to allow interested parties to understand and view the complete complex-wide picture. A common application allows identification of total waste volumes, material classes, disposition sites, choke points, and technological or regulatory barriers to treatment and disposal. The Applied Research Center (ARC) at Florida International University (FIU) in Miami, Florida, has completed the deployment of this fully operational, web-based forecast system. New functional modules and annual waste forecast data updates have been added to ensure the long-term viability and value of this system. In conclusion: WIMS continues to successfully accomplish the goals and objectives set forth by DOE for this project. WIMS has replaced the historic process of each DOE site gathering, organizing, and reporting their waste forecast information utilizing different database and display technologies. In addition, WIMS meets DOE's objective to have the complex-wide waste forecast information available to all stakeholders and the public in one easy-to-navigate system. The enhancements to WIMS made over the year since its web deployment include the addition of new DOE sites, an updated data set, and the ability to easily print the forecast data tables, the disposition maps, and the GIS maps. Future enhancements will include a high-level waste summary, a display of waste forecast by mode of transportation, and a user help module. The waste summary display module will provide a high-level summary view of the waste forecast data based on the selection of sites, facilities, material types, and forecast years. The waste summary report module will allow users to build custom filtered reports in a variety of formats, such as MS Excel, MS Word, and PDF. The user help module will provide a step-by-step explanation of various modules, using screen shots and general tutorials. The help module will also provide instructions for printing and margin/layout settings to assist users in using their local printers to print maps and reports. (authors)« less

  6. Transferability of species distribution models for the detection of an invasive alien bryophyte using imaging spectroscopy data

    NASA Astrophysics Data System (ADS)

    Skowronek, Sandra; Van De Kerchove, Ruben; Rombouts, Bjorn; Aerts, Raf; Ewald, Michael; Warrie, Jens; Schiefer, Felix; Garzon-Lopez, Carol; Hattab, Tarek; Honnay, Olivier; Lenoir, Jonathan; Rocchini, Duccio; Schmidtlein, Sebastian; Somers, Ben; Feilhauer, Hannes

    2018-06-01

    Remote sensing is a promising tool for detecting invasive alien plant species. Mapping and monitoring those species requires accurate detection. So far, most studies relied on models that are locally calibrated and validated against available field data. Consequently, detecting invasive alien species at new study areas requires the acquisition of additional field data which can be expensive and time-consuming. Model transfer might thus provide a viable alternative. Here, we mapped the distribution of the invasive alien bryophyte Campylopus introflexus to i) assess the feasibility of spatially transferring locally calibrated models for species detection between four different heathland areas in Germany and Belgium and ii) test the potential of combining calibration data from different sites in one species distribution model (SDM). In a first step, four different SDMs were locally calibrated and validated by combining field data and airborne imaging spectroscopy data with a spatial resolution ranging from 1.8 m to 4 m and a spectral resolution of about 10 nm (244 bands). A one-class classifier, Maxent, which is based on the comparison of probability densities, was used to generate all SDMs. In a second step, each model was transferred to the three other study areas and the performance of the models for predicting C. introflexus occurrences was assessed. Finally, models combining calibration data from three study areas were built and tested on the remaining fourth site. In this step, different combinations of Maxent modelling parameters were tested. For the local models, the area under the curve for a test dataset (test AUC) was between 0.57-0.78, while the test AUC for the single transfer models ranged between 0.45-0.89. For the combined models the test AUC was between 0.54-0.9. The success of transferring models calibrated in one site to another site highly depended on the respective study site; the combined models provided higher test AUC values than the locally calibrated models for three out of four study sites. Furthermore, we also demonstrated the importance of optimizing the Maxent modelling parameters. Overall, our results indicate the potential of a combined model to map C. introflexus without the need for new calibration data.

  7. Cloud fraction at the ARM SGP site: Reducing uncertainty with self-organizing maps

    DOE PAGES

    Kennedy, Aaron D.; Dong, Xiquan; Xi, Baike

    2015-02-15

    Instrument downtime leads to uncertainty in the monthly and annual record of cloud fraction (CF), making it difficult to perform time series analyses of cloud properties and perform detailed evaluations of model simulations. As cloud occurrence is partially controlled by the large-scale atmospheric environment, this knowledge is used to reduce uncertainties in the instrument record. Synoptic patterns diagnosed from the North American Regional Reanalysis (NARR) during the period 1997–2010 are classified using a competitive neural network known as the self-organizing map (SOM). The classified synoptic states are then compared to the Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) instrumentmore » record to determine the expected CF. A number of SOMs are tested to understand how the number of classes and the period of classifications impact the relationship between classified states and CFs. Bootstrapping is utilized to quantify the uncertainty of the instrument record when statistical information from the SOM is included. Although all SOMs significantly reduce the uncertainty of the CF record calculated in Kennedy et al. (Theor Appl Climatol 115:91–105, 2014), SOMs with a large number of classes and separated by month are required to produce the lowest uncertainty and best agreement with the annual cycle of CF. Lastly, this result may be due to a manifestation of seasonally dependent biases in NARR.« less

  8. The Westfield River Watershed Interactive Atlas: mapping recreation data on the web

    Treesearch

    Robert S. Bristow; Steven Riberdy

    2002-01-01

    Imagine searching the web to create a map to your house. You could use one of the many Internet mapping sites like MapBlast™ or MapQuest™ to create such a map. But maybe you wish to get a map of trails for the Grand Canyon. The National Park Service web site could serve that need. Or you may wish to get a map to show you the way from the Orlando...

  9. Airborne Laser Scanning - based vegetation classification in grasslands: a feasibility study

    NASA Astrophysics Data System (ADS)

    Zlinszky, András; Vári, Ágnes; Deák, Balázs; Mücke, Werner; Székely, Balázs

    2013-04-01

    Airborne Laser Scanning is traditionally used for topography mapping, exploiting its ability to map terrain elevation under vegetation cover. Parallel to this, the application of ALS for vegetation classification and mapping of ecological variables is rapidly emerging. Point clouds surveyed by ALS provide accurate representations of vegetation structure and are therefore considered suitable for mapping vegetation classes as long as their vertical structure is characteristic. For this reason, most ALS-based vegetation mapping studies have been carried out in forests, with some rare applications for shrublands or tall grass vegetation such as reeds. The use of remote-sensing derived vegetation maps is widespread in ecological research and is also gaining importance in practical conservation. There is an increasing demand for reliable, high-resolution datasets covering large protected areas. ALS can provide both the coverage and the high resolution, and can prove to be an economical solution due to the potential for automatic processing and the wide range of uses that allows spreading costs. Grasslands have a high importance in nature conservation as due to the drastical land use changes (arable lands, afforestation, fragmentation by linear structures) in the last centuries the extent of these habitats have been considerably reduced. Among the habitat types protected by the Habitat Directive of the Natura 2000 system, several grassland habitat types (e.g. hay meadows, dry grasslands harbouring rare Orchid species) have special priority for conservation. For preserving these habitat types application of a proper management - including mowing or grazing - has a crucial role. Therefore not only the mapping of the locations of habitats but the way of management is needed for representing the natural processes. The objective of this study was to test the applicability of airborne laser scanning for ecological vegetation mapping in and around grasslands. The study site is situated in the Sopron mountains (Western Hungary), in the Soproni-hegység Natura 2000 site which has an area of 52 km2 protected under Natura 2000. While the Natura 2000 site is dominated by forests, it also holds several grassland habitats: lowland and mountain hay meadows, dry grasslands, fringe communities and disturbed secondary grasslands in the forest clearings. In the framework of the Changehabitats2 project, ALS surveys of the area were carried out, under leaf-on conditions in July 2012 and March 2011, with a full-waveform sensor (Riegl LMS-Q680i) operating at 1550 nm. The resulting point density was 12.8 echoes/m2. 10 grasslands were selected from the study site varying in size between 0.1 and 3 km2. The ALS datasets of these sites were processed in OPALS software to a set of rasters representing different variables of the leaf-on and leaf-off point cloud, each with a raster size of 0.5 m * 0.5 m. Echo amplitude for single echoes was calibrated to reflectance using estimated reflectivity of an asphalt surface. A Digital Terrain Model was created using hierarchical robust filtering in SCOP++ software, and normalized digital surface models were calculated by subtracting this from the local surface models. Echo width and surface roughness were also calculated in OPALS. Surface openness was measured in order to distinguish circular and linear features, such as sedge clumps and ploughing marks. Finally, all these rasters were stacked in ENVI software, resulting in a pseudo-image, where each pseudo-channel corresponded to a different ALS-derived variable. Reference datasets were collected in the field using differential GNSS. Habitat type, dominant vegetation species and other features of interest were noted in the point attributes, and a set of 90 circular plots was recorded. These were overlain on the pseudo-image to create regions of interest (ROI), resulting in 100-4000 ROI pixels for each vegetation category. Multivariate statistics were then used in order to analyse the trends in the data: interdependence of the ALS-derived variables was tested by calculating covariance matrices and the separability of the vegetation categories was tested by the Jeffries-Matusita index. The results of the multivariate analysis were used for merging and excluding classes from the initial 24 to find those where the accuracy was sufficient and the results were relevant for conservation. Results show that a large number of variables can be derived from leaf-on and leaf-off ALS surveys that are statistically independent from each other and thus provide a good basis for classification. With appropriate calculation methods, a number of pseudo-bands comparable to multispectral imagery can be reached. These categories are of course not equally relevant for vegetation mapping. Not surprisingly, the categories with the strongest separability are those closely linked to vegetation height or texture. Mown grasslands can be well separated from abandoned grasslands; tussock-forming grasses from more uniform textured tall herbs. While quality control is still in progress and the trade-off between the number of categories and the classification accuracy is evident, it is expected that for a limited range of vegetation classes, the reliability of the method will be comparable to passive optical image processing. Using a classification method slightly different from the conventional ALS-based vegetation mapping approach, encouraging results have been obtained for an area where the vertical structure of the vegetation is limited. The present state of the art of ALS sensors including full waveform processing and calibration of surface reflectance allows vegetation mapping even in grasslands. It is expected that the further development of waveform digitization and the ever-increasing scanning frequencies will further support such studies in the future.

  10. Applications of Mobile GIS in Forestry South Australia

    NASA Astrophysics Data System (ADS)

    Battad, D. T.; Mackenzie, P.

    2012-07-01

    South Australian Forestry Corporation (ForestrySA) had been actively investigating the applications of mobile GIS in forestry for the past few years. The main objective is to develop an integrated mobile GIS capability that allows staff to collect new spatial information, verify existing data, and remotely access and post data from the field. Two (2) prototype mobile GIS applications have been developed already using the Environmental Systems Research Institute (ESRI) ARCGISR technology as the main spatial component. These prototype systems are the Forest Health Surveillance System and the Mobile GIS for Wetlands System. The Forest Health Surveillance System prototype is used primarily for aerial forest health surveillance. It was developed using a tablet PC with ArcMapR GIS. A customised toolbar was developed using ArcObjectsR in the Visual Basic 6 Integrated Development Environment (IDE). The resulting dynamic linked library provides a suite of custom tools which enables the following: - quickly create spatial features and attribute the data - full utilisation of global positioning system (GPS) technology - excellent screen display navigation tools, i.e. pan, rotate map, capture of flight path - seamless integration of data into GIS as geodatabase (GDB) feature classes - screen entry of text and conversion to annotation feature classes The Mobile GIS for Wetlands System prototype was developed for verifying existing wetland areas within ForestrySA's plantation estate, collect new wetland data, and record wetland conditions. Mapping of actual wetlands within ForestrySA's plantation estate is very critical because of the need to establish protection buffers around these features during the implementation of plantation operations. System development has been focussed on a mobile phone platform (HTC HD2R ) with WindowsR Mobile 6, ESRI's ArcGISR Mobile software development kit (SDK) employing ArcObjectsR written on C#.NET IDE, and ArcGIS ServerR technology. The system is also implemented in the VILIVR X70. The system has undergone testing by ForestrySA staff and the refinements had been incorporated in the latest version of the system. The system has the following functionalities: - display and query strategic data layers - collect and edit spatial and attribute data - full utilisation of global positioning GPS technology - distance and area measurements - display of high resolution imagery - seamless integration of data into GIS as feature classes - screen display and navigation tools, i.e. pan, zoom in/out, rotate map - capture of flight path The next stages in the development of mobile GIS technologies at ForestrySA are to enhance the systems' capabilities as one of the organization main data capture systems. These include incorporating other applications, e.g. roads/tracks mapping, mapping of significant sites, etc., and migration of the system to Windows Phone7.

  11. Linear Subpixel Learning Algorithm for Land Cover Classification from WELD using High Performance Computing

    NASA Technical Reports Server (NTRS)

    Kumar, Uttam; Nemani, Ramakrishna R.; Ganguly, Sangram; Kalia, Subodh; Michaelis, Andrew

    2017-01-01

    In this work, we use a Fully Constrained Least Squares Subpixel Learning Algorithm to unmix global WELD (Web Enabled Landsat Data) to obtain fractions or abundances of substrate (S), vegetation (V) and dark objects (D) classes. Because of the sheer nature of data and compute needs, we leveraged the NASA Earth Exchange (NEX) high performance computing architecture to optimize and scale our algorithm for large-scale processing. Subsequently, the S-V-D abundance maps were characterized into 4 classes namely, forest, farmland, water and urban areas (with NPP-VIIRS-national polar orbiting partnership visible infrared imaging radiometer suite nighttime lights data) over California, USA using Random Forest classifier. Validation of these land cover maps with NLCD (National Land Cover Database) 2011 products and NAFD (North American Forest Dynamics) static forest cover maps showed that an overall classification accuracy of over 91 percent was achieved, which is a 6 percent improvement in unmixing based classification relative to per-pixel-based classification. As such, abundance maps continue to offer an useful alternative to high-spatial resolution data derived classification maps for forest inventory analysis, multi-class mapping for eco-climatic models and applications, fast multi-temporal trend analysis and for societal and policy-relevant applications needed at the watershed scale.

  12. Linear Subpixel Learning Algorithm for Land Cover Classification from WELD using High Performance Computing

    NASA Astrophysics Data System (ADS)

    Ganguly, S.; Kumar, U.; Nemani, R. R.; Kalia, S.; Michaelis, A.

    2017-12-01

    In this work, we use a Fully Constrained Least Squares Subpixel Learning Algorithm to unmix global WELD (Web Enabled Landsat Data) to obtain fractions or abundances of substrate (S), vegetation (V) and dark objects (D) classes. Because of the sheer nature of data and compute needs, we leveraged the NASA Earth Exchange (NEX) high performance computing architecture to optimize and scale our algorithm for large-scale processing. Subsequently, the S-V-D abundance maps were characterized into 4 classes namely, forest, farmland, water and urban areas (with NPP-VIIRS - national polar orbiting partnership visible infrared imaging radiometer suite nighttime lights data) over California, USA using Random Forest classifier. Validation of these land cover maps with NLCD (National Land Cover Database) 2011 products and NAFD (North American Forest Dynamics) static forest cover maps showed that an overall classification accuracy of over 91% was achieved, which is a 6% improvement in unmixing based classification relative to per-pixel based classification. As such, abundance maps continue to offer an useful alternative to high-spatial resolution data derived classification maps for forest inventory analysis, multi-class mapping for eco-climatic models and applications, fast multi-temporal trend analysis and for societal and policy-relevant applications needed at the watershed scale.

  13. Evaluating the Effectiveness of Flood Control Strategies in Contrasting Urban Watersheds and Implications for Houston's Future Flood Vulnerability

    NASA Astrophysics Data System (ADS)

    Ganguly, S.; Kumar, U.; Nemani, R. R.; Kalia, S.; Michaelis, A.

    2016-12-01

    In this work, we use a Fully Constrained Least Squares Subpixel Learning Algorithm to unmix global WELD (Web Enabled Landsat Data) to obtain fractions or abundances of substrate (S), vegetation (V) and dark objects (D) classes. Because of the sheer nature of data and compute needs, we leveraged the NASA Earth Exchange (NEX) high performance computing architecture to optimize and scale our algorithm for large-scale processing. Subsequently, the S-V-D abundance maps were characterized into 4 classes namely, forest, farmland, water and urban areas (with NPP-VIIRS - national polar orbiting partnership visible infrared imaging radiometer suite nighttime lights data) over California, USA using Random Forest classifier. Validation of these land cover maps with NLCD (National Land Cover Database) 2011 products and NAFD (North American Forest Dynamics) static forest cover maps showed that an overall classification accuracy of over 91% was achieved, which is a 6% improvement in unmixing based classification relative to per-pixel based classification. As such, abundance maps continue to offer an useful alternative to high-spatial resolution data derived classification maps for forest inventory analysis, multi-class mapping for eco-climatic models and applications, fast multi-temporal trend analysis and for societal and policy-relevant applications needed at the watershed scale.

  14. Mapping the exciton diffusion in semiconductor nanocrystal solids.

    PubMed

    Kholmicheva, Natalia; Moroz, Pavel; Bastola, Ebin; Razgoniaeva, Natalia; Bocanegra, Jesus; Shaughnessy, Martin; Porach, Zack; Khon, Dmitriy; Zamkov, Mikhail

    2015-03-24

    Colloidal nanocrystal solids represent an emerging class of functional materials that hold strong promise for device applications. The macroscopic properties of these disordered assemblies are determined by complex trajectories of exciton diffusion processes, which are still poorly understood. Owing to the lack of theoretical insight, experimental strategies for probing the exciton dynamics in quantum dot solids are in great demand. Here, we develop an experimental technique for mapping the motion of excitons in semiconductor nanocrystal films with a subdiffraction spatial sensitivity and a picosecond temporal resolution. This was accomplished by doping PbS nanocrystal solids with metal nanoparticles that force the exciton dissociation at known distances from their birth. The optical signature of the exciton motion was then inferred from the changes in the emission lifetime, which was mapped to the location of exciton quenching sites. By correlating the metal-metal interparticle distance in the film with corresponding changes in the emission lifetime, we could obtain important transport characteristics, including the exciton diffusion length, the number of predissociation hops, the rate of interparticle energy transfer, and the exciton diffusivity. The benefits of this approach to device applications were demonstrated through the use of two representative film morphologies featuring weak and strong interparticle coupling.

  15. 40 CFR 146.93 - Post-injection site care and site closure.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 40 Protection of Environment 23 2014-07-01 2014-07-01 false Post-injection site care and site... Applicable to Class VI Wells § 146.93 Post-injection site care and site closure. (a) The owner or operator of a Class VI well must prepare, maintain, and comply with a plan for post-injection site care and site...

  16. Prediction of nonlinear soil effects

    USGS Publications Warehouse

    Hartzell, S.; Bonilla, L.F.; Williams, R.A.

    2004-01-01

    Mathematical models of soil nonlinearity in common use and recently developed nonlinear codes compared to investigate the range of their predictions. We consider equivalent linear formulations with and without frequency-dependent moduli and damping ratios and nonlinear formulations for total and effective stress. Average velocity profiles to 150 m depth with midrange National Earthquake Hazards Reduction Program site classifications (B, BC, C, D, and E) in the top 30 m are used to compare the response of a wide range of site conditions from rock to soft soil. Nonlinear soil models are compared using the amplification spectrum, calculated as the ratio of surface ground motion to the input motion at the base of the velocity profile. Peak input motions from 0.1g to 0.9g are considered. For site class B, no significant differences exist between the models considered in this article. For site classes BC and C, differences are small at low input motions (0.1g to 0.2g), but become significant at higher input levels. For site classes D and E the overdamping of frequencies above about 4 Hz by the equivalent linear solution with frequency-independent parameters is apparent for the entire range of input motions considered. The equivalent linear formulation with frequency-dependent moduli and damping ratios under damps relative to the nonlinear models considered for site class C with larger input motions and most input levels for site classes D and E. At larger input motions the underdamping for site classes D and E is not as severe as the overdamping with the frequency-independent formulation, but there are still significant differences in the time domain. A nonlinear formulation is recommended for site classes D and E and for site classes BC and C with input motions greater than a few tenths of the acceleration of gravity. The type of nonlinear formulation to use is driven by considerations of the importance of water content and the availability of laboratory soils data. Our average amplification curves from a nonlinear effective stress formulation compare favorably with observed spectral amplification at class D and E sites in the Seattle area for the 2001 Nisqually earthquake.

  17. Seismic hazard analysis for Jayapura city, Papua

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Robiana, R., E-mail: robiana-geo104@yahoo.com; Cipta, A.

    Jayapura city had destructive earthquake which occurred on June 25, 1976 with the maximum intensity VII MMI scale. Probabilistic methods are used to determine the earthquake hazard by considering all possible earthquakes that can occur in this region. Earthquake source models using three types of source models are subduction model; comes from the New Guinea Trench subduction zone (North Papuan Thrust), fault models; derived from fault Yapen, TareraAiduna, Wamena, Memberamo, Waipago, Jayapura, and Jayawijaya, and 7 background models to accommodate unknown earthquakes. Amplification factor using geomorphological approaches are corrected by the measurement data. This data is related to rock typemore » and depth of soft soil. Site class in Jayapura city can be grouped into classes B, C, D and E, with the amplification between 0.5 – 6. Hazard maps are presented with a 10% probability of earthquake occurrence within a period of 500 years for the dominant periods of 0.0, 0.2, and 1.0 seconds.« less

  18. The chloroplast tRNALys(UUU) gene from mustard (Sinapis alba) contains a class II intron potentially coding for a maturase-related polypeptide.

    PubMed

    Neuhaus, H; Link, G

    1987-01-01

    The trnK gene endocing the tRNALys(UUU) has been located on mustard (Sinapis alba) chloroplast DNA, 263 bp upstream of the psbA gene on the same strand. The nucleotide sequence of the trnK gene and its flanking regions as well as the putative transcription start and termination sites are shown. The 5' end of the transcript lies 121 bp upstream of the 5' tRNA coding region and is preceded by procaryotic-type "-10" and "-35" sequence elements, while the 3' end maps 2.77 kb downstream to a DNA region with possible stemloop secondary structure. The anticodon loop of the tRNALys is interrupted by a 2,574 bp intron containing a long open reading frame, which codes for 524 amino acids. Based on conserved stem and loop structures, this intron has characteristic features of a class II intron. A region near the carboxyl terminus of the derived polypeptide appears structurally related to maturases.

  19. Contractive type non-self mappings on metric spaces of hyperbolic type

    NASA Astrophysics Data System (ADS)

    Ciric, Ljubomir B.

    2006-05-01

    Let (X,d) be a metric space of hyperbolic type and K a nonempty closed subset of X. In this paper we study a class of mappings from K into X (not necessarily self-mappings on K), which are defined by the contractive condition (2.1) below, and a class of pairs of mappings from K into X which satisfy the condition (2.28) below. We present fixed point and common fixed point theorems which are generalizations of the corresponding fixed point theorems of Ciric [L.B. Ciric, Quasi-contraction non-self mappings on Banach spaces, Bull. Acad. Serbe Sci. Arts 23 (1998) 25-31; L.B. Ciric, J.S. Ume, M.S. Khan, H.K.T. Pathak, On some non-self mappings, Math. Nachr. 251 (2003) 28-33], Rhoades [B.E. Rhoades, A fixed point theorem for some non-self mappings, Math. Japon. 23 (1978) 457-459] and many other authors. Some examples are presented to show that our results are genuine generalizations of known results from this area.

  20. A cellular and regulatory map of the GABAergic nervous system of C. elegans

    PubMed Central

    Gendrel, Marie; Atlas, Emily G; Hobert, Oliver

    2016-01-01

    Neurotransmitter maps are important complements to anatomical maps and represent an invaluable resource to understand nervous system function and development. We report here a comprehensive map of neurons in the C. elegans nervous system that contain the neurotransmitter GABA, revealing twice as many GABA-positive neuron classes as previously reported. We define previously unknown glia-like cells that take up GABA, as well as 'GABA uptake neurons' which do not synthesize GABA but take it up from the extracellular environment, and we map the expression of previously uncharacterized ionotropic GABA receptors. We use the map of GABA-positive neurons for a comprehensive analysis of transcriptional regulators that define the GABA phenotype. We synthesize our findings of specification of GABAergic neurons with previous reports on the specification of glutamatergic and cholinergic neurons into a nervous system-wide regulatory map which defines neurotransmitter specification mechanisms for more than half of all neuron classes in C. elegans. DOI: http://dx.doi.org/10.7554/eLife.17686.001 PMID:27740909

  1. Mapping and analysis of phosphorylation sites: a quick guide for cell biologists

    PubMed Central

    Dephoure, Noah; Gould, Kathleen L.; Gygi, Steven P.; Kellogg, Douglas R.

    2013-01-01

    A mechanistic understanding of signaling networks requires identification and analysis of phosphorylation sites. Mass spectrometry offers a rapid and highly sensitive approach to mapping phosphorylation sites. However, mass spectrometry has significant limitations that must be considered when planning to carry out phosphorylation-site mapping. Here we provide an overview of key information that should be taken into consideration before beginning phosphorylation-site analysis, as well as a step-by-step guide for carrying out successful experiments. PMID:23447708

  2. Monitoring of reforestation on burnt areas in Western Russia using Landsat time series

    NASA Astrophysics Data System (ADS)

    Vorobev, Oleg; Kurbanov, Eldar

    2017-04-01

    Forest fires are main disturbance factor for the natural ecosystems, especially in boreal forests. Monitoring for the dynamic of forest cover regeneration in the post-fire period of ecosystem recovery is crucial to both estimation of forest stands and forest management. In this study, on the example of burnt areas of 2010 wildfires in Republic Mari El of Russian Federation we estimated post-fire dynamic of different classes of vegetation cover between 2011-2016 years with the use of time series Landsat satellite images. To validate the newly obtained thematic maps we used 80 test sites with independent field data, as well Canopus-B images of high spatial resolution. For the analysis of the satellite images we referred to Normalized Differenced Vegetation Index (NDVI) and Tasseled Cap transformation. The research revealed that at the post-fire period the area of thematic classes "Reforestation of the middle and low density" has maximum cover (44%) on the investigated burnt area. On the burnt areas of 2010 there is ongoing active process of grass overgrowing (up to 20%), also there are thematic classes of deadwood (15%) and open spaces (10%). The results indicate that there is mostly natural regeneration of tree species pattern corresponding to the pre-fire condition. Forest plantations cover only 2% of the overall burnt area. By the 2016 year the NDVI parameters of young vegetation cover were recovered to the pre-fire level as well. The overall unsupervised classification accuracy of more than 70% shows high degree of agreement between the thematic map and the ground truth data. The research results can be applied for the long term succession monitoring and management plan development for the reforestation activities on the lands disturbed by fire.

  3. A Global Map of Lipid-Binding Proteins and Their Ligandability in Cells.

    PubMed

    Niphakis, Micah J; Lum, Kenneth M; Cognetta, Armand B; Correia, Bruno E; Ichu, Taka-Aki; Olucha, Jose; Brown, Steven J; Kundu, Soumajit; Piscitelli, Fabiana; Rosen, Hugh; Cravatt, Benjamin F

    2015-06-18

    Lipids play central roles in physiology and disease, where their structural, metabolic, and signaling functions often arise from interactions with proteins. Here, we describe a set of lipid-based chemical proteomic probes and their global interaction map in mammalian cells. These interactions involve hundreds of proteins from diverse functional classes and frequently occur at sites of drug action. We determine the target profiles for several drugs across the lipid-interaction proteome, revealing that its ligandable content extends far beyond traditionally defined categories of druggable proteins. In further support of this finding, we describe a selective ligand for the lipid-binding protein nucleobindin-1 (NUCB1) and show that this compound perturbs the hydrolytic and oxidative metabolism of endocannabinoids in cells. The described chemical proteomic platform thus provides an integrated path to both discover and pharmacologically characterize a wide range of proteins that participate in lipid pathways in cells. Copyright © 2015 Elsevier Inc. All rights reserved.

  4. Segmentation by fusion of histogram-based k-means clusters in different color spaces.

    PubMed

    Mignotte, Max

    2008-05-01

    This paper presents a new, simple, and efficient segmentation approach, based on a fusion procedure which aims at combining several segmentation maps associated to simpler partition models in order to finally get a more reliable and accurate segmentation result. The different label fields to be fused in our application are given by the same and simple (K-means based) clustering technique on an input image expressed in different color spaces. Our fusion strategy aims at combining these segmentation maps with a final clustering procedure using as input features, the local histogram of the class labels, previously estimated and associated to each site and for all these initial partitions. This fusion framework remains simple to implement, fast, general enough to be applied to various computer vision applications (e.g., motion detection and segmentation), and has been successfully applied on the Berkeley image database. The experiments herein reported in this paper illustrate the potential of this approach compared to the state-of-the-art segmentation methods recently proposed in the literature.

  5. Mapping post-fire forest regeneration and vegetation recovery using a combination of very high spatial resolution and hyperspectral satellite imagery

    NASA Astrophysics Data System (ADS)

    Mitri, George H.; Gitas, Ioannis Z.

    2013-02-01

    Careful evaluation of forest regeneration and vegetation recovery after a fire event provides vital information useful in land management. The use of remotely sensed data is considered to be especially suitable for monitoring ecosystem dynamics after fire. The aim of this work was to map post-fire forest regeneration and vegetation recovery on the Mediterranean island of Thasos by using a combination of very high spatial (VHS) resolution (QuickBird) and hyperspectral (EO-1 Hyperion) imagery and by employing object-based image analysis. More specifically, the work focused on (1) the separation and mapping of three major post-fire classes (forest regeneration, other vegetation recovery, unburned vegetation) existing within the fire perimeter, and (2) the differentiation and mapping of the two main forest regeneration classes, namely, Pinus brutia regeneration, and Pinus nigra regeneration. The data used in this study consisted of satellite images and field observations of homogeneous regenerated and revegetated areas. The methodology followed two main steps: a three-level image segmentation, and, a classification of the segmented images. The process resulted in the separation of classes related to the aforementioned objectives. The overall accuracy assessment revealed very promising results (approximately 83.7% overall accuracy, with a Kappa Index of Agreement of 0.79). The achieved accuracy was 8% higher when compared to the results reported in a previous work in which only the EO-1 Hyperion image was employed in order to map the same classes. Some classification confusions involving the classes of P. brutia regeneration and P. nigra regeneration were observed. This could be attributed to the absence of large and dense homogeneous areas of regenerated pine trees in the study area.

  6. The evolutionary implications of knox-I gene duplications in conifers: correlated evidence from phylogeny, gene mapping, and analysis of functional divergence.

    PubMed

    Guillet-Claude, Carine; Isabel, Nathalie; Pelgas, Betty; Bousquet, Jean

    2004-12-01

    Class I knox genes code for transcription factors that play an essential role in plant growth and development as central regulators of meristem cell identity. Based on the analysis of new cDNA sequences from various tissues and genomic DNA sequences, we identified a highly diversified group of class I knox genes in conifers. Phylogenetic analyses of complete amino acid sequences from various seed plants indicated that all conifer sequences formed a monophyletic group. Within conifers, four subgroups here named genes KN1 to KN4 were well delineated, each regrouping pine and spruce sequences. KN4 was sister group to KN3, which was sister group to KN1 and KN2. Genetic mapping on the genomes of two divergent Picea species indicated that KN1 and KN2 are located close to each other on the same linkage group, whereas KN3 and KN4 mapped on different linkage groups, correlating the more ancient divergence of these two genes. The proportion of synonymous and nonsynonymous substitutions suggested intense purifying selection for the four genes. However, rates of substitution per year indicated an evolution in two steps: faster rates were noted after gene duplications, followed subsequently by lower rates. Positive directional selection was detected for most of the internal branches harboring an accelerated rate of evolution. In addition, many sites with highly significant amino acid rate shift were identified between these branches. However, the tightly linked KN1 and KN2 did not diverge as much from each other. The implications of the correlation between phylogenetic, structural, and functional information are discussed in relation to the diversification of the knox-I gene family in conifers.

  7. 47 CFR 73.4108 - FM transmitter site map submissions.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 47 Telecommunication 4 2010-10-01 2010-10-01 false FM transmitter site map submissions. 73.4108... RADIO BROADCAST SERVICES Rules Applicable to All Broadcast Stations § 73.4108 FM transmitter site map submissions. See Memorandum Opinion and Order and Public Notice, adopted October 24, 1986. 1 FCC Rcd 381 (1986...

  8. Aerial Mapping of Forests Affected by Pathogens Using UAVs, Hyperspectral Sensors, and Artificial Intelligence.

    PubMed

    Sandino, Juan; Pegg, Geoff; Gonzalez, Felipe; Smith, Grant

    2018-03-22

    The environmental and economic impacts of exotic fungal species on natural and plantation forests have been historically catastrophic. Recorded surveillance and control actions are challenging because they are costly, time-consuming, and hazardous in remote areas. Prolonged periods of testing and observation of site-based tests have limitations in verifying the rapid proliferation of exotic pathogens and deterioration rates in hosts. Recent remote sensing approaches have offered fast, broad-scale, and affordable surveys as well as additional indicators that can complement on-ground tests. This paper proposes a framework that consolidates site-based insights and remote sensing capabilities to detect and segment deteriorations by fungal pathogens in natural and plantation forests. This approach is illustrated with an experimentation case of myrtle rust ( Austropuccinia psidii ) on paperbark tea trees ( Melaleuca quinquenervia ) in New South Wales (NSW), Australia. The method integrates unmanned aerial vehicles (UAVs), hyperspectral image sensors, and data processing algorithms using machine learning. Imagery is acquired using a Headwall Nano-Hyperspec ® camera, orthorectified in Headwall SpectralView ® , and processed in Python programming language using eXtreme Gradient Boosting (XGBoost), Geospatial Data Abstraction Library (GDAL), and Scikit-learn third-party libraries. In total, 11,385 samples were extracted and labelled into five classes: two classes for deterioration status and three classes for background objects. Insights reveal individual detection rates of 95% for healthy trees, 97% for deteriorated trees, and a global multiclass detection rate of 97%. The methodology is versatile to be applied to additional datasets taken with different image sensors, and the processing of large datasets with freeware tools.

  9. Aerial Mapping of Forests Affected by Pathogens Using UAVs, Hyperspectral Sensors, and Artificial Intelligence

    PubMed Central

    2018-01-01

    The environmental and economic impacts of exotic fungal species on natural and plantation forests have been historically catastrophic. Recorded surveillance and control actions are challenging because they are costly, time-consuming, and hazardous in remote areas. Prolonged periods of testing and observation of site-based tests have limitations in verifying the rapid proliferation of exotic pathogens and deterioration rates in hosts. Recent remote sensing approaches have offered fast, broad-scale, and affordable surveys as well as additional indicators that can complement on-ground tests. This paper proposes a framework that consolidates site-based insights and remote sensing capabilities to detect and segment deteriorations by fungal pathogens in natural and plantation forests. This approach is illustrated with an experimentation case of myrtle rust (Austropuccinia psidii) on paperbark tea trees (Melaleuca quinquenervia) in New South Wales (NSW), Australia. The method integrates unmanned aerial vehicles (UAVs), hyperspectral image sensors, and data processing algorithms using machine learning. Imagery is acquired using a Headwall Nano-Hyperspec® camera, orthorectified in Headwall SpectralView®, and processed in Python programming language using eXtreme Gradient Boosting (XGBoost), Geospatial Data Abstraction Library (GDAL), and Scikit-learn third-party libraries. In total, 11,385 samples were extracted and labelled into five classes: two classes for deterioration status and three classes for background objects. Insights reveal individual detection rates of 95% for healthy trees, 97% for deteriorated trees, and a global multiclass detection rate of 97%. The methodology is versatile to be applied to additional datasets taken with different image sensors, and the processing of large datasets with freeware tools. PMID:29565822

  10. Near-Atomic Three-Dimensional Mapping for Site-Specific Chemistry of 'Superbugs'.

    PubMed

    Adineh, Vahid R; Marceau, Ross K W; Velkov, Tony; Li, Jian; Fu, Jing

    2016-11-09

    Emergence of multidrug resistant Gram-negative bacteria has caused a global health crisis and last-line class of antibiotics such as polymyxins are increasingly used. The chemical composition at the cell surface plays a key role in antibiotic resistance. Unlike imaging the cellular ultrastructure with well-developed electron microscopy, the acquisition of a high-resolution chemical map of the bacterial surface still remains a technological challenge. In this study, we developed an atom probe tomography (APT) analysis approach to acquire mass spectra in the pulsed-voltage mode and reconstructed the 3D chemical distribution of atoms and molecules in the subcellular domain at the near-atomic scale. Using focused ion beam (FIB) milling together with micromanipulation, site-specific samples were retrieved from a single cell of Acinetobacter baumannii prepared as needle-shaped tips with end radii less than 60 nm, followed by a nanoscale coating of silver in the order of 10 nm. The significantly elevated conductivity provided by the metallic coating enabled successful and routine field evaporation of the biological material, with all the benefits of pulsed-voltage APT. In parallel with conventional cryo-TEM imaging, our novel approach was applied to investigate polymyxin-susceptible and -resistant strains of A. baumannii after treatment of polymyxin B. Acquired atom probe mass spectra from the cell envelope revealed characteristic fragments of phosphocholine from the polymyxin-susceptible strain, but limited signals from this molecule were detected in the polymyxin-resistant strain. This study promises unprecedented capacity for 3D nanoscale imaging and chemical mapping of bacterial cells at the ultimate 3D spatial resolution using APT.

  11. Active site nanospace of aminoacyl tRNA synthetase: difference between the class I and class II synthetases.

    PubMed

    Dutta, Saheb; Choudhury, Kaberi; Banik, Sindrila Dutta; Nandi, Nilashis

    2014-03-01

    The present work is aimed at understanding the origin of the difference in the molecular organization of the active site nanospaces of the class I and class II aminoacyl tRNA synthetases (aaRSs) which are tunnel-like structures. The active site encloses the cognate amino acid (AA) and the adenosine triphosphate (ATP) to carry out aminoacylation reaction. Comparison of the structures of the active site of the class I and class II (aaRSs) shows that the nanodimensional tunnels are curved in opposite directions in the two classes. We investigated the origin of this difference using quantum mechanical computation of electrostatic potential (ESP) of substrates, surrounding residues and ions, using Atoms in Molecule (AIM) Theory and charge population analysis. We show that the difference is principally due to the variation in the spatial charge distribution of ATP in the two classes which correspond to extended and bent conformations of ATP. The present computation shows that the most feasible pathway for nucleophilic attack to alphaP is oppositely directed for class I and class II aaRSs. The available crystal structures show that the cognate AA is indeed located along the channel favorable for nucleophilic attack as predicted by the ESP analysis. It is also shown that the direction of the channel changes its orientation when the orientation of ATP is changed from extended to a bent like structure. We further used the AIM theory to confirm the direction of the approach of AA in each case and the results corroborate the results from the ESP analysis. The opposite curvatures of the active site nanospaces in class I and class II aaRSs are related with the influence of the charge distributions of the extended and bent conformations of ATP, respectively. The results of the computation of electrostatic potential by successive addition of active site residues show that their roles on the reaction are similar in both classes despite the difference in the organization of the active sites of class I and class II aaRSs. The difference in mechanism in two classes as pointed out in recent study (S. Dutta Banik and N. Nandi, J. Biomol. Struct. Dyn. 30, 701 (2012)) is related with the fact that the relative arrangement of the ATP with respect to the AA is opposite in class I and class II aaRSs as explained in the present work. The charge population difference between the reacting centers (which are the alphaP atom of ATP (q(p)) and the attacking oxygen atom of carboxylic acid group (q(o)), respectively) denoted by delta(q), is a measure of the propensity of nucleophilic attack. The population analysis of the substrate AA shows that a non-negligible difference exists between the attacking oxygens of AA in class I (syn) and in class II (anti) which is one reason for the lower value of delta(q) in class II relative to class I. The population analysis of the AA, ATP, Mg+2 ions and active site residues shows that the difference in delta(q) values of the two classes is substantially reduced. When ions and residues are considered. Thus, the bent state of ATP, Mg+2 ions and active site residues complements it cognate AA to carry out the nucleophilic reaction in class I as efficiently as occurs in class I (with the extended state of ATP, single Mg+2 ion and active site residues). This could be one reason for the two different conformations of ATP in the two classes. The mutual arrangements of AA and ATP in each aaRS are guided by the spatial charge distribution of ATP (extended and bent). The present work shows that the construction of nanospace complements the arrangement of the substrate (AA and ATP).

  12. Ordered versus Unordered Map for Primitive Data Types

    DTIC Science & Technology

    2015-09-01

    mapped to some element. C++ provides two types of map containers within the standard template library, the std ::map and the std ::unordered_map...classes. As the name implies, the containers main functional difference is that the elements in the std ::map are ordered by the key, and the std ...unordered_map are not ordered based on their key. The std ::unordered_map elements are placed into “buckets” based on a hash value computed for their key

  13. Single classifier, OvO, OvA and RCC multiclass classification method in handheld based smartphone gait identification

    NASA Astrophysics Data System (ADS)

    Raziff, Abdul Rafiez Abdul; Sulaiman, Md Nasir; Mustapha, Norwati; Perumal, Thinagaran

    2017-10-01

    Gait recognition is widely used in many applications. In the application of the gait identification especially in people, the number of classes (people) is many which may comprise to more than 20. Due to the large amount of classes, the usage of single classification mapping (direct classification) may not be suitable as most of the existing algorithms are mostly designed for the binary classification. Furthermore, having many classes in a dataset may result in the possibility of having a high degree of overlapped class boundary. This paper discusses the application of multiclass classifier mappings such as one-vs-all (OvA), one-vs-one (OvO) and random correction code (RCC) on handheld based smartphone gait signal for person identification. The results is then compared with a single J48 decision tree for benchmark. From the result, it can be said that using multiclass classification mapping method thus partially improved the overall accuracy especially on OvO and RCC with width factor more than 4. For OvA, the accuracy result is worse than a single J48 due to a high number of classes.

  14. Remote sensing analysis of vegetation at the San Carlos Apache Reservation, Arizona and surrounding area

    USGS Publications Warehouse

    Norman, Laura M.; Middleton, Barry R.; Wilson, Natalie R.

    2018-01-01

    Mapping of vegetation types is of great importance to the San Carlos Apache Tribe and their management of forestry and fire fuels. Various remote sensing techniques were applied to classify multitemporal Landsat 8 satellite data, vegetation index, and digital elevation model data. A multitiered unsupervised classification generated over 900 classes that were then recoded to one of the 16 generalized vegetation/land cover classes using the Southwest Regional Gap Analysis Project (SWReGAP) map as a guide. A supervised classification was also run using field data collected in the SWReGAP project and our field campaign. Field data were gathered and accuracy assessments were generated to compare outputs. Our hypothesis was that a resulting map would update and potentially improve upon the vegetation/land cover class distributions of the older SWReGAP map over the 24,000  km2 study area. The estimated overall accuracies ranged between 43% and 75%, depending on which method and field dataset were used. The findings demonstrate the complexity of vegetation mapping, the importance of recent, high-quality-field data, and the potential for misleading results when insufficient field data are collected.

  15. Concept Maps in Introductory Statistics

    ERIC Educational Resources Information Center

    Witmer, Jeffrey A.

    2016-01-01

    Concept maps are tools for organizing thoughts on the main ideas in a course. I present an example of a concept map that was created through the work of students in an introductory class and discuss major topics in statistics and relationships among them.

  16. Teaching Basic Geographical Skills: Map and Compass Activities.

    ERIC Educational Resources Information Center

    Trussell, Margaret Edith

    1986-01-01

    Presents a unit on map and compass activities which introduces compass direction, magnetic declination and conversion of map measurement to familiar units. Requires four, one-hour class meetings and may be followed by a half-day orienteering activity. (Author/JDH)

  17. Fast photochemical oxidation of proteins (FPOP) maps the epitope of EGFR binding to adnectin.

    PubMed

    Yan, Yuetian; Chen, Guodong; Wei, Hui; Huang, Richard Y-C; Mo, Jingjie; Rempel, Don L; Tymiak, Adrienne A; Gross, Michael L

    2014-12-01

    Epitope mapping is an important tool for the development of monoclonal antibodies, mAbs, as therapeutic drugs. Recently, a class of therapeutic mAb alternatives, adnectins, has been developed as targeted biologics. They are derived from the 10th type III domain of human fibronectin ((10)Fn3). A common approach to map the epitope binding of these therapeutic proteins to their binding partners is X-ray crystallography. Although the crystal structure is known for Adnectin 1 binding to human epidermal growth factor receptor (EGFR), we seek to determine complementary binding in solution and to test the efficacy of footprinting for this purpose. As a relatively new tool in structural biology and complementary to X-ray crystallography, protein footprinting coupled with mass spectrometry is promising for protein-protein interaction studies. We report here the use of fast photochemical oxidation of proteins (FPOP) coupled with MS to map the epitope of EGFR-Adnectin 1 at both the peptide and amino-acid residue levels. The data correlate well with the previously determined epitopes from the crystal structure and are consistent with HDX MS data, which are presented in an accompanying paper. The FPOP-determined binding interface involves various amino-acid and peptide regions near the N terminus of EGFR. The outcome adds credibility to oxidative labeling by FPOP for epitope mapping and motivates more applications in the therapeutic protein area as a stand-alone method or in conjunction with X-ray crystallography, NMR, site-directed mutagenesis, and other orthogonal methods.

  18. Fast Photochemical Oxidation of Proteins (FPOP) Maps the Epitope of EGFR Binding to Adnectin

    NASA Astrophysics Data System (ADS)

    Yan, Yuetian; Chen, Guodong; Wei, Hui; Huang, Richard Y.-C.; Mo, Jingjie; Rempel, Don L.; Tymiak, Adrienne A.; Gross, Michael L.

    2014-12-01

    Epitope mapping is an important tool for the development of monoclonal antibodies, mAbs, as therapeutic drugs. Recently, a class of therapeutic mAb alternatives, adnectins, has been developed as targeted biologics. They are derived from the 10th type III domain of human fibronectin (10Fn3). A common approach to map the epitope binding of these therapeutic proteins to their binding partners is X-ray crystallography. Although the crystal structure is known for Adnectin 1 binding to human epidermal growth factor receptor (EGFR), we seek to determine complementary binding in solution and to test the efficacy of footprinting for this purpose. As a relatively new tool in structural biology and complementary to X-ray crystallography, protein footprinting coupled with mass spectrometry is promising for protein-protein interaction studies. We report here the use of fast photochemical oxidation of proteins (FPOP) coupled with MS to map the epitope of EGFR-Adnectin 1 at both the peptide and amino-acid residue levels. The data correlate well with the previously determined epitopes from the crystal structure and are consistent with HDX MS data, which are presented in an accompanying paper. The FPOP-determined binding interface involves various amino-acid and peptide regions near the N terminus of EGFR. The outcome adds credibility to oxidative labeling by FPOP for epitope mapping and motivates more applications in the therapeutic protein area as a stand-alone method or in conjunction with X-ray crystallography, NMR, site-directed mutagenesis, and other orthogonal methods.

  19. A Preliminary Study on the Use of Mind Mapping as a Visual-Learning Strategy in General Education Science Classes for Arabic Speakers in the United Arab Emirates

    ERIC Educational Resources Information Center

    Wilson, Kenesha; Copeland-Solas, Eddia; Guthrie-Dixon, Natalie

    2016-01-01

    Mind mapping was introduced as a culturally relevant pedagogy aimed at enhancing the teaching and learning experience in a general education, Environmental Science class for mostly Emirati English Language Learners (ELL). Anecdotal evidence suggests that the students are very artistic and visual and enjoy group-based activities. It was decided to…

  20. The intercrater plains of Mercury and the Moon: Their nature, origin and role in terrestrial planet evolution. Constuction of the paleogeologic maps. Ph.D. Thesis

    NASA Technical Reports Server (NTRS)

    Leake, M. A.

    1982-01-01

    The Post Caoris surface was derived from the geologic map by plotting all Class 1 and 2 features. To construct the Caloris surface, Class 3 craters were plotted onto the map, as well as all Class 3 plains. However, if P3 plains were adjacent to P2 units, and appeared continuous with other exposures of P3 material, the P2 unit was assumed to overlie the C3 and P3 material. The younger superposed craters were ignored with respect to the Class 3 surface. The boundaries of P3 materials were then continued under the superposed units, using a minimum of reasonable assumptions. For instance, if P2 and P4 plains were adjacent units, no P3 plains were presumed to lie under the P2 material. Similarly, all C3 craters were considered to have some deposits of impact melt after formation, even if they are mapped containing younger units. C3 craters which were superposed with younger units, C1 or C2 craters, and perhaps P2 plains, were redrawn as if later materials had not been emplaced, i.e., in their post impact, pre-degradation states.

  1. Site-specific microtubule-associated protein 4 dephosphorylation causes microtubule network densification in pressure overload cardiac hypertrophy.

    PubMed

    Chinnakkannu, Panneerselvam; Samanna, Venkatesababa; Cheng, Guangmao; Ablonczy, Zsolt; Baicu, Catalin F; Bethard, Jennifer R; Menick, Donald R; Kuppuswamy, Dhandapani; Cooper, George

    2010-07-09

    In severe pressure overload-induced cardiac hypertrophy, a dense, stabilized microtubule network forms that interferes with cardiocyte contraction and microtubule-based transport. This is associated with persistent transcriptional up-regulation of cardiac alpha- and beta-tubulin and microtubule-stabilizing microtubule-associated protein 4 (MAP4). There is also extensive microtubule decoration by MAP4, suggesting greater MAP4 affinity for microtubules. Because the major determinant of this affinity is site-specific MAP4 dephosphorylation, we characterized this in hypertrophied myocardium and then assessed the functional significance of each dephosphorylation site found by mimicking it in normal cardiocytes. We first isolated MAP4 from normal and pressure overload-hypertrophied feline myocardium; volume-overloaded myocardium, which has an equal degree and duration of hypertrophy but normal functional and cytoskeletal properties, served as a control for any nonspecific growth-related effects. After cloning cDNA-encoding feline MAP4 and obtaining its deduced amino acid sequence, we characterized by mass spectrometry any site-specific MAP4 dephosphorylation. Solely in pressure overload-hypertrophied myocardium, we identified striking MAP4 dephosphorylation at Ser-472 in the MAP4 N-terminal projection domain and at Ser-924 and Ser-1056 in the assembly-promoting region of the C-terminal microtubule-binding domain. Site-directed mutagenesis of MAP4 cDNA was then used to switch each serine to non-phosphorylatable alanine. Wild-type and mutated cDNAs were used to construct adenoviruses; microtubule network density, stability, and MAP4 decoration were assessed in normal cardiocytes following an equivalent level of MAP4 expression. The Ser-924 --> Ala MAP4 mutant produced a microtubule phenotype indistinguishable from that seen in pressure overload hypertrophy, such that Ser-924 MAP4 dephosphorylation during pressure overload hypertrophy may be central to this cytoskeletal abnormality.

  2. Basic mapping principles for visualizing cancer data using Geographic Information Systems (GIS).

    PubMed

    Brewer, Cynthia A

    2006-02-01

    Maps and other data graphics may play a role in generating ideas and hypotheses at the beginning of a project. They are useful as part of analyses for evaluating model results and then at the end of a project when researchers present their results and conclusions to varied audiences, such as their local research group, decision makers, or a concerned public. Cancer researchers are gaining skill with geographic information system (GIS) mapping as one of their many tools and are broadening the symbolization approaches they use for investigating and illustrating their data. A single map is one of many possible representations of the data, so making multiple maps is often part of a complete mapping effort. Symbol types, color choices, and data classing each affect the information revealed by a map and are best tailored to the specific characteristics of data. Related data can be examined in series with coordinated classing and can also be compared using multivariate symbols that build on the basic rules of symbol design. Informative legend wording and setting suitable map projections are also basic to skilled mapmaking.

  3. Updating the Geologic Maps of the Apollo 15, 16, and 17 Landing Sites

    NASA Astrophysics Data System (ADS)

    Garry, W. B.; Mest, S. C.; Yingst, R. A.; Ostrach, L. R.; Petro, N. E.; Cohen, B. A.

    2018-06-01

    Our team is funded through NASA's Planetary Data Archiving, Restoration, and Tools (PDART) program to produce two new USGS Special Investigation Maps (SIM) for the Apollo 15, 16, and 17 missions: a regional map (1:200K) and a landing-site map (1:24K).

  4. 27 CFR 9.192 - Wahluke Slope.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... boundary line of section 15, which forms a portion of the boundary line of the Hanford Site, T15N/R26E, Wahatis Peak map; then (4) Proceed generally southwest along the Hanford Site boundary in a series of 90... Bridge map, and continue onto the Priest Rapids NE map to the intersection of the Hanford Site boundary...

  5. 27 CFR 9.192 - Wahluke Slope.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... boundary line of section 15, which forms a portion of the boundary line of the Hanford Site, T15N/R26E, Wahatis Peak map; then (4) Proceed generally southwest along the Hanford Site boundary in a series of 90... Bridge map, and continue onto the Priest Rapids NE map to the intersection of the Hanford Site boundary...

  6. 27 CFR 9.192 - Wahluke Slope.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... boundary line of section 15, which forms a portion of the boundary line of the Hanford Site, T15N/R26E, Wahatis Peak map; then (4) Proceed generally southwest along the Hanford Site boundary in a series of 90... Bridge map, and continue onto the Priest Rapids NE map to the intersection of the Hanford Site boundary...

  7. 27 CFR 9.192 - Wahluke Slope.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... boundary line of section 15, which forms a portion of the boundary line of the Hanford Site, T15N/R26E, Wahatis Peak map; then (4) Proceed generally southwest along the Hanford Site boundary in a series of 90... Bridge map, and continue onto the Priest Rapids NE map to the intersection of the Hanford Site boundary...

  8. 27 CFR 9.192 - Wahluke Slope.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... boundary line of section 15, which forms a portion of the boundary line of the Hanford Site, T15N/R26E, Wahatis Peak map; then (4) Proceed generally southwest along the Hanford Site boundary in a series of 90... Bridge map, and continue onto the Priest Rapids NE map to the intersection of the Hanford Site boundary...

  9. Across-site patterns of modulation detection: Relation to speech recognitiona)

    PubMed Central

    Garadat, Soha N.; Zwolan, Teresa A.; Pfingst, Bryan E.

    2012-01-01

    The aim of this study was to identify across-site patterns of modulation detection thresholds (MDTs) in subjects with cochlear implants and to determine if removal of sites with the poorest MDTs from speech processor programs would result in improved speech recognition. Five hundred millisecond trains of symmetric-biphasic pulses were modulated sinusoidally at 10 Hz and presented at a rate of 900 pps using monopolar stimulation. Subjects were asked to discriminate a modulated pulse train from an unmodulated pulse train for all electrodes in quiet and in the presence of an interleaved unmodulated masker presented on the adjacent site. Across-site patterns of masked MDTs were then used to construct two 10-channel MAPs such that one MAP consisted of sites with the best masked MDTs and the other MAP consisted of sites with the worst masked MDTs. Subjects’ speech recognition skills were compared when they used these two different MAPs. Results showed that MDTs were variable across sites and were elevated in the presence of a masker by various amounts across sites. Better speech recognition was observed when the processor MAP consisted of sites with best masked MDTs, suggesting that temporal modulation sensitivity has important contributions to speech recognition with a cochlear implant. PMID:22559376

  10. A geochemical atlas of North Carolina, USA

    USGS Publications Warehouse

    Reid, J.C.

    1993-01-01

    A geochemical atlas of North Carolina, U.S.A., was prepared using National Uranium Resource Evaluation (NURE) stream-sediment data. Before termination of the NURE program, sampling of nearly the entire state (48,666 square miles of land area) was completed and geochemical analyses were obtained. The NURE data are applicable to mineral exploration, agriculture, waste disposal siting issues, health, and environmental studies. Applications in state government include resource surveys to assist mineral exploration by identifying geochemical anomalies and areas of mineralization. Agriculture seeks to identify areas with favorable (or unfavorable) conditions for plant growth, disease, and crop productivity. Trace elements such as cobalt, copper, chromium, iron, manganese, zinc, and molybdenum must be present within narrow ranges in soils for optimum growth and productivity. Trace elements as a contributing factor to disease are of concern to health professionals. Industry can use pH and conductivity data for water samples to site facilities which require specific water quality. The North Carolina NURE database consists of stream-sediment samples, groundwater samples, and stream-water analyses. The statewide database consists of 6,744 stream-sediment sites, 5,778 groundwater sample sites, and 295 stream-water sites. Neutron activation analyses were provided for U, Br, Cl, F, Mn, Na, Al, V, Dy in groundwater and stream water, and for U, Th, Hf, Ce, Fe, Mn, Na, Sc, Ti, V, Al, Dy, Eu, La, Sm, Yb, and Lu in stream sediments. Supplemental analyses by other techniques were reported on U (extractable), Ag, As, Ba, Be, Ca, Co, Cr, Cu, K, Li, Mg, Mo, Nb, Ni, P, Pb, Se, Sn, Sr, W, Y, and Zn for 4,619 stream-sediment samples. A small subset of 334 stream samples was analyzed for gold. The goal of the atlas was to make available the statewide NURE data with minimal interpretation to enable prospective users to modify and manipulate the data for their end use. The atlas provides only very general indication of geochemical distribution patterns and should not be used for site specific studies. The atlas maps for each element were computer-generated at the state's geographic information system (Center for Geographic Information and Analysis [CGIA]). The Division of Statistics and Information Services provided input files. The maps in the atlas are point maps. Each sample is represented by a symbol generally corresponding to a quartile class. Other reports will transmit sample and analytical data for state regions. Data are tentatively planned to be available on disks in spreadsheet format for personal computers. During the second phase of this project, stream-sediment samples are being assigned to state geologic map unit names using a GIS system to determine background and anomaly values. Subsequent publications will make this geochemical data and accompanying interpretations available to a wide spectrum of interdisciplinary users. ?? 1993.

  11. Multispectral Thermal Imagery and Its Application to the Geologic Mapping of the Koobi Fora Formation, Northwestern Kenya

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Green, Mary K.

    The Koobi Fora Formation in northwestern Kenya has yielded more hominin fossils dated between 2.1 and 1.2 Ma than any other location on Earth. This research was undertaken to discover the spectral signatures of a portion of the Koobi Fora Formation using imagery from the DOE's Multispectral Thermal Imager (MTI) satellite. Creation of a digital geologic map from MTI imagery was a secondary goal of this research. MTI is unique amongst multispectral satellites in that it co-collects data from 15 spectral bands ranging from the visible to the thermal infrared with a ground sample distance of 5 meters per pixelmore » in the visible and 20 meters in the infrared. The map was created in two stages. The first was to correct the base MTI image using spatial accuracy assessment points collected in the field. The second was to mosaic various MTI images together to create the final Koobi Fora map. Absolute spatial accuracy of the final map product is 73 meters. The geologic classification of the Koobi Fora MTI map also took place in two stages. The field work stage involved location of outcrops of different lithologies within the Koobi Fora Formation. Field descriptions of these outcrops were made and their locations recorded. During the second stage, a linear spectral unmixing algorithm was applied to the MTI mosaic. In order to train the linear spectra unmixing algorithm, regions of interest representing four different classes of geologic material (tuff, alluvium, carbonate, and basalt), as well as a vegetation class were defined within the MTI mosaic. The regions of interest were based upon the aforementioned field data as well as overlays of geologic maps from the 1976 Iowa State mapping project. Pure spectra were generated for each class from the regions of interest, and then the unmixing algorithm classified each pixel according to relative percentage of classes found within the pixel based upon the pure spectra values. A total of four unique combinations of geologic classes were analyzed using the algorithm. The tuffs within the Koobi Fora Formation were defined with 100% accuracy using a combination of pure spectra from the basalt, vegetation, and tuff.« less

  12. Seismic hazard and risk assessment for large Romanian dams situated in the Moldavian Platform

    NASA Astrophysics Data System (ADS)

    Moldovan, Iren-Adelina; Popescu, Emilia; Otilia Placinta, Anica; Petruta Constantin, Angela; Toma Danila, Dragos; Borleanu, Felix; Emilian Toader, Victorin; Moldoveanu, Traian

    2016-04-01

    Besides periodical technical inspections, the monitoring and the surveillance of dams' related structures and infrastructures, there are some more seismic specific requirements towards dams' safety. The most important one is the seismic risk assessment that can be accomplished by rating the dams into seismic risk classes using the theory of Bureau and Ballentine (2002), and Bureau (2003), taking into account the maximum expected peak ground motions at the dams site - values obtained using probabilistic hazard assessment approaches (Moldovan et al., 2008), the structures vulnerability and the downstream risk characteristics (human, economical, historic and cultural heritage, etc) in the areas that might be flooded in the case of a dam failure. Probabilistic seismic hazard (PSH), vulnerability and risk studies for dams situated in the Moldavian Platform, starting from Izvorul Muntelui Dam, down on Bistrita and following on Siret River and theirs affluent will be realized. The most vulnerable dams will be studied in detail and flooding maps will be drawn to find the most exposed downstream localities both for risk assessment studies and warnings. GIS maps that clearly indicate areas that are potentially flooded are enough for these studies, thus giving information on the number of inhabitants and goods that may be destroyed. Geospatial servers included topography is sufficient to achieve them, all other further studies are not necessary for downstream risk assessment. The results will consist of local and regional seismic information, dams specific characteristics and locations, seismic hazard maps and risk classes, for all dams sites (for more than 30 dams), inundation maps (for the most vulnerable dams from the region) and possible affected localities. The studies realized in this paper have as final goal to provide the local emergency services with warnings of a potential dam failure and ensuing flood as a result of an large earthquake occurrence, allowing further public training for evacuation. The work is supported from PNII/PCCA 2013 Project DARING 69/2014, financed by UEFISCDI, Romania. Bureau GJ (2003) "Dams and appurtenant facilities" Earthquake Engineering Handbook, CRS Press, WF Chen, and C Scawthorn (eds.), Boca Raton, pp. 26.1-26.47. Bureau GJ and Ballentine GD (2002) "A comprehensive seismic vulnerability and loss assessment of the State of Carolina using HAZUS. Part IV: Dam inventory and vulnerability assessment methodology", 7th National Conference on Earthquake Engineering, July 21-25, Boston, Earthquake Engineering Research Institute, Oakland, CA. Moldovan IA, Popescu E, Constantin A (2008), "Probabilistic seismic hazard assessment in Romania: application for crustal seismic active zones", Romanian Journal of Physics, Vol.53, Nos. 3-4

  13. Surface-material maps of Viking landing sites on Mars

    NASA Technical Reports Server (NTRS)

    Moore, H. J.; Keller, J. M.

    1991-01-01

    Researchers mapped the surface materials at the Viking landing sites on Mars to gain a better understanding of the materials and rock populations at the sites and to provide information for future exploration. The maps extent to about 9 m in front of each lander and are about 15 m wide - an area comparable to the area of a pixel in high resolution Viking Orbiter images. The maps are divided into the near and far fields. Data for the near fields are from 1/10 scale maps, umpublished maps, and lander images. Data for the far fields are from 1/20 scale contour maps, contoured lander camera mosaics, and lander images. Rocks are located on these maps using stereometric measurements and the contour maps. Frequency size distribution of rocks and the responses of soil-like materials to erosion by engine exhausts during landings are discussed.

  14. Development of two socioeconomic indices for Saudi Arabia.

    PubMed

    AlOmar, Reem S; Parslow, Roger C; Law, Graham R

    2018-06-26

    Health and socioeconomic status (SES) are linked in studies worldwide. Measures of SES exist for many countries, however not for Saudi Arabia (SA). We describe two indices of area-based SES for SA. Routine census data has been used to construct two indices of SES at the geographically-delimited administrative region of Governorates in SA (n = 118). The data used included indicators of educational status, employment status, car and material ownership. A continuous measure of SES was constructed using exploratory factor analysis (EFA) and a categorical measure of SES using latent class analysis (LCA). Both indices were mapped by Governorates. The EFA identified three factors: The first explained 51.58% of the common variance within the interrelated factors, the second 15.14%, and the third 14.26%. These proportions were used in the formulation of the standard index. The scores were fixed to range from 100 for the affluent Governorate and 0 for the deprived. The LCA found a 4 class model as the best model fit. Class 1 was termed "affluent" and included 11.01% of Governorates, class 2 "upper middle class" (44.91%), class 3 "lower middle class" (33.05%) and class 4 "deprived" (11.01%). The populated urbanised Governorates were found to be the most affluent whereas the smaller rural Governorates were the most deprived. This is the first description of measures of SES in SA at a geographical level. Two measures have been successfully constructed and mapped. The maps show similar patterns suggesting validity. Both indices support the common perception of SES in SA.

  15. Phenome-Wide Association Study (PheWAS) for Detection of Pleiotropy within the Population Architecture using Genomics and Epidemiology (PAGE) Network

    PubMed Central

    Pendergrass, Sarah A.; Brown-Gentry, Kristin; Dudek, Scott; Frase, Alex; Torstenson, Eric S.; Goodloe, Robert; Ambite, Jose Luis; Avery, Christy L.; Buyske, Steve; Bůžková, Petra; Deelman, Ewa; Fesinmeyer, Megan D.; Haiman, Christopher A.; Heiss, Gerardo; Hindorff, Lucia A.; Hsu, Chu-Nan; Jackson, Rebecca D.; Kooperberg, Charles; Le Marchand, Loic; Lin, Yi; Matise, Tara C.; Monroe, Kristine R.; Moreland, Larry; Park, Sungshim L.; Reiner, Alex; Wallace, Robert; Wilkens, Lynn R.; Crawford, Dana C.; Ritchie, Marylyn D.

    2013-01-01

    Using a phenome-wide association study (PheWAS) approach, we comprehensively tested genetic variants for association with phenotypes available for 70,061 study participants in the Population Architecture using Genomics and Epidemiology (PAGE) network. Our aim was to better characterize the genetic architecture of complex traits and identify novel pleiotropic relationships. This PheWAS drew on five population-based studies representing four major racial/ethnic groups (European Americans (EA), African Americans (AA), Hispanics/Mexican-Americans, and Asian/Pacific Islanders) in PAGE, each site with measurements for multiple traits, associated laboratory measures, and intermediate biomarkers. A total of 83 single nucleotide polymorphisms (SNPs) identified by genome-wide association studies (GWAS) were genotyped across two or more PAGE study sites. Comprehensive tests of association, stratified by race/ethnicity, were performed, encompassing 4,706 phenotypes mapped to 105 phenotype-classes, and association results were compared across study sites. A total of 111 PheWAS results had significant associations for two or more PAGE study sites with consistent direction of effect with a significance threshold of p<0.01 for the same racial/ethnic group, SNP, and phenotype-class. Among results identified for SNPs previously associated with phenotypes such as lipid traits, type 2 diabetes, and body mass index, 52 replicated previously published genotype–phenotype associations, 26 represented phenotypes closely related to previously known genotype–phenotype associations, and 33 represented potentially novel genotype–phenotype associations with pleiotropic effects. The majority of the potentially novel results were for single PheWAS phenotype-classes, for example, for CDKN2A/B rs1333049 (previously associated with type 2 diabetes in EA) a PheWAS association was identified for hemoglobin levels in AA. Of note, however, GALNT2 rs2144300 (previously associated with high-density lipoprotein cholesterol levels in EA) had multiple potentially novel PheWAS associations, with hypertension related phenotypes in AA and with serum calcium levels and coronary artery disease phenotypes in EA. PheWAS identifies associations for hypothesis generation and exploration of the genetic architecture of complex traits. PMID:23382687

  16. Identification of RFLP and NBS/PK profiling markers for disease resistance loci in genetic maps of oats.

    PubMed

    Sanz, M J; Loarce, Y; Fominaya, A; Vossen, J H; Ferrer, E

    2013-01-01

    Two of the domains most widely shared among R genes are the nucleotide binding site (NBS) and protein kinase (PK) domains. The present study describes and maps a number of new oat resistance gene analogues (RGAs) with two purposes in mind: (1) to identify genetic regions that contain R genes and (2) to determine whether RGAs can be used as molecular markers for qualitative loci and for QTLs affording resistance to Puccinia coronata. Such genes have been mapped in the diploid A. strigosa × A. wiestii (Asw map) and the hexaploid MN841801-1 × Noble-2 (MN map). Genomic and cDNA NBS-RGA probes from oat, barley and wheat were used to produce RFLPs and to obtain markers by motif-directed profiling based on the NBS (NBS profiling) and PK (PK profiling) domains. The efficiency of primers used in NBS/PK profiling to amplify RGA fragments was assessed by sequencing individual marker bands derived from genomic and cDNA fragments. The positions of 184 markers were identified in the Asw map, while those for 99 were identified in the MN map. Large numbers of NBS and PK profiling markers were found in clusters across different linkage groups, with the PK profiling markers more evenly distributed. The location of markers throughout the genetic maps and the composition of marker clusters indicate that NBS- and PK-based markers cover partly complementary regions of oat genomes. Markers of the different classes obtained were found associated with the two resistance loci, PcA and R-284B-2, mapped on Asw, and with five out of eight QTLs for partial resistance in the MN map. 53 RGA-RFLPs and 187 NBS/PK profiling markers were also mapped on the hexaploid map A. byzantina cv. Kanota × A. sativa cv. Ogle. Significant co-localization was seen between the RGA markers in the KO map and other markers closely linked to resistance loci, such as those for P. coronata and barley yellow dwarf virus (Bydv) that were previously mapped in other segregating populations.

  17. Acoustic mapping of the regional seafloor geology in and around Hawaiian ocean dredged-material disposal sites

    USGS Publications Warehouse

    Torresan, Michael E.; Gardner, James V.

    2000-01-01

    During January and February 1998 the U.S. Geological Survey Coastal and Marine Geology Team (USGS) conducted regional high-resolution multibeam mapping surveys of the area surrounding EPA-designated ocean disposal sites located offshore of the Hawaiian Islands of Oahu, Kauai, Maui, and Hawaii. The sites are all located within 5 nautical miles of shore on insular shelves or slopes. Regional maps were required of areas much larger than the disposal sites themselves to assess both the regional seafloor geology and the immediate vicinity of the disposal sites. The purpose of the disposal site surveys was to delimit the extent of disposal material by producing detailed bathymetric and backscatter maps of the seafloor with a ± 1 m spatial accuracy and <1% depth error. The advantage of using multibeam over conventional towed, single-beam sidescan sonar is that the multibeam data are accurately georeferenced for precise location of all imaged features. The multibeam produces a coregistered acoustic-backscatter map that is often required to locate individual disposal deposits. These data were collected by the USGS as part of its regional seafloor mapping and in support of ocean disposal site monitoring studies conducted in cooperation with the US Environmental Protection Agency (EPA) and the US Army Corps of Engineers (COE).

  18. Mapping wildfire vulnerability in Mediterranean Europe. Testing a stepwise approach for operational purposes.

    PubMed

    Oliveira, Sandra; Félix, Fernando; Nunes, Adélia; Lourenço, Luciano; Laneve, Giovanni; Sebastián-López, Ana

    2018-01-15

    Vulnerability assessment is a vital component of wildfire management. This research focused on the development of a framework to measure and map vulnerability levels in several areas within Mediterranean Europe, where wildfires are a major concern. The framework followed a stepwise approach to evaluate its main components, expressed by exposure, sensitivity and coping capacity. Data on population density, fuel types, protected areas location, roads infrastructure and surveillance activities, among others, were integrated to create composite indices, representing each component and articulated in multiple dimensions. Maps were created for several test areas, in northwest Portugal, southwest Sardinia in Italy and northeast Corsica in France, with the contribution of local participants from civil protection institutions and forest services. Results showed the influence of fuel sensitivity levels, population distribution and protected areas coverage for the overall vulnerability classes. Reasonable levels of accuracy were found on the maps provided through the validation procedure, with an overall match above 72% for the several sites. The systematic and flexible approach applied allowed for adjustments to local circumstances with regards to data availability and fire management procedures, without compromising its consistency and with substantial operational capabilities. The results obtained and the positive feedback of end-users encourage its further application, as a means to improve wildfire management strategies at multiple levels with the latest scientific outputs. Copyright © 2017 Elsevier Ltd. All rights reserved.

  19. Mapping invasive wetland plants in the Hudson River National Estuarine Research Reserve using quickbird satellite imagery

    USGS Publications Warehouse

    Laba, M.; Downs, R.; Smith, S.; Welsh, S.; Neider, C.; White, S.; Richmond, M.; Philpot, W.; Baveye, P.

    2008-01-01

    The National Estuarine Research Reserve (NERR) program is a nationally coordinated research and monitoring program that identifies and tracks changes in ecological resources of representative estuarine ecosystems and coastal watersheds. In recent years, attention has focused on using high spatial and spectral resolution satellite imagery to map and monitor wetland plant communities in the NERRs, particularly invasive plant species. The utility of this technology for that purpose has yet to be assessed in detail. To that end, a specific high spatial resolution satellite imagery, QuickBird, was used to map plant communities and monitor invasive plants within the Hudson River NERR (HRNERR). The HRNERR contains four diverse tidal wetlands (Stockport Flats, Tivoli Bays, Iona Island, and Piermont), each with unique water chemistry (i.e., brackish, oligotrophic and fresh) and, consequently, unique assemblages of plant communities, including three invasive plants (Trapa natans, Phragmites australis, and Lythrum salicaria). A maximum-likelihood classification was used to produce 20-class land cover maps for each of the four marshes within the HRNERR. Conventional contingency tables and a fuzzy set analysis served as a basis for an accuracy assessment of these maps. The overall accuracies, as assessed by the contingency tables, were 73.6%, 68.4%, 67.9%, and 64.9% for Tivoli Bays, Stockport Flats, Piermont, and Iona Island, respectively. Fuzzy assessment tables lead to higher estimates of map accuracies of 83%, 75%, 76%, and 76%, respectively. In general, the open water/tidal channel class was the most accurately mapped class and Scirpus sp. was the least accurately mapped. These encouraging accuracies suggest that high-resolution satellite imagery offers significant potential for the mapping of invasive plant species in estuarine environments. ?? 2007 Elsevier Inc. All rights reserved.

  20. In Vivo Investigation of Escitalopram’s Allosteric Site on the Serotonin Transporter

    PubMed Central

    Murray, Karen E.; Ressler, Kerry J.; Owens, Michael J.

    2015-01-01

    Escitalopram is a commonly prescribed antidepressant of the selective serotonin reuptake inhibitor class. Clinical evidence and mapping of the serotonin transporter (SERT) identified that escitalopram, in addition to its binding to a primary uptake-blocking site, is capable of binding to the SERT via an allosteric site that is hypothesized to alter escitalopram’s kinetics at the SERT. The studies reported here examined the in vivo role of the SERT allosteric site in escitalopram action. A knockin mouse model that possesses an allosteric-null SERT was developed. Autoradiographic studies indicated that the knockin protein was expressed at a lower density than endogenous mouse SERT (approximately 10–30% of endogenous mouse SERT), but the knockin mice are a viable tool to study the allosteric site. Microdialysis studies in the ventral hippocampus found no measurable decrease in extracellular serotonin response after local escitalopram challenge in mice without the allosteric site compared to mice with the site (p = 0.297). In marble burying assays there was a modest effect of the absence of the allosteric site, with a larger systemic dose of escitalopram (10-fold) necessary for the same effect as in mice with intact SERT (p = 0.023). However, there was no effect of the allosteric site in the tail suspension test. Together these data suggest that there may be a regional specificity in the role of the allosteric site. The lack of a robust effect overall suggests that the role of the allosteric site for escitalopram on the SERT may not produce meaningful in vivo effects. PMID:26621784

  1. A guide for the use of digital elevation model data for making soil surveys

    USGS Publications Warehouse

    Klingebiel, A.A.; Horvath, Emil H.; Reybold, William U.; Moore, D.G.; Fosnight, E.A.; Loveland, Thomas R.

    1988-01-01

    The intent of this publication is twofold: (1) to serve as a user guide for soil scientists and others interested in learning about the value and use of digital elevation model (DEM) data in making soil surveys and (2) to provide documentation of the Soil Landscape Analysis Project (SLAP). This publication provides a step-by-step guide on how digital slope-class maps are adjusted to topographic maps and orthophotoquads to obtain accurate slope-class maps, and how these derivative maps can be used as a base for soil survey premaps. In addition, guidance is given on the use of aspect-class maps and other resource data in making pre-maps. The value and use of tabular summaries are discussed. Examples of the use of DEM products by the authors and by selected field soil scientists are also given. Additional information on SLAP procedures may be obtained from USDA, Soil Conservation Service, Soil Survey Division, P.O. Box 2890, Washington, D.C. 20013, and from references (Horvath and others, 1987; Horvath and others, 1983; Klingebiel and others, 1987; and Young, 1987) listed in this publication. The slope and aspect products and the procedures for using these products have evolved during 5 years of cooperative research with the USDA, Soil Conservation Service and Forest Service, and the USDI, Bureau of Land Management.

  2. Multiple positive solutions for a class of integral inclusions

    NASA Astrophysics Data System (ADS)

    Hong, Shihuang

    2008-04-01

    This paper deals with sufficient conditions for the existence of at least two positive solutions for a class of integral inclusions arising in the traffic theory. To show our main results, we apply a norm-type expansion and compression fixed point theorem for multivalued map due to Agarwal and O'Regan [A note on the existence of multiple fixed points for multivalued maps with applications, J. Differential Equation 160 (2000) 389-403].

  3. The Effects of a Concept Map-Based Information Display in an Electronic Portfolio System on Information Processing and Retention in a Fifth-Grade Science Class Covering the Earth's Atmosphere

    ERIC Educational Resources Information Center

    Kim, Paul; Olaciregui, Claudia

    2008-01-01

    An electronic portfolio system, designed to serve as a resource-based learning space, was tested in a fifth-grade science class. The control-group students accessed a traditional folder-based information display in the system and the experimental-group students accessed a concept map-based information display to review a science portfolio. The…

  4. A dynamical system view of cerebellar function

    NASA Astrophysics Data System (ADS)

    Keeler, James D.

    1990-06-01

    First some previous theories of cerebellar function are reviewed, and deficiencies in how they map onto the neurophysiological structure are pointed out. I hypothesize that the cerebellar cortex builds an internal model, or prediction, of the dynamics of the animal. A class of algorithms for doing prediction based on local reconstruction of attractors are described, and it is shown how this class maps very well onto the structure of the cerebellar cortex. I hypothesize that the climbing fibers multiplex between different trajectories corresponding to different modes of operation. Then the vestibulo-ocular reflex is examined, and experiments to test the proposed model are suggested. The purpose of the presentation here is twofold: (1) To enlighten physiologists to the mathematics of a class of prediction algorithms that map well onto cerebellar architecture. (2) To enlighten dynamical system theorists to the physiological and anatomical details of the cerebellum.

  5. Mapping Land Cover Types in Amazon Basin Using 1km JERS-1 Mosaic

    NASA Technical Reports Server (NTRS)

    Saatchi, Sassan S.; Nelson, Bruce; Podest, Erika; Holt, John

    2000-01-01

    In this paper, the 100 meter JERS-1 Amazon mosaic image was used in a new classifier to generate a I km resolution land cover map. The inputs to the classifier were 1 km resolution mean backscatter and seven first order texture measures derived from the 100 m data by using a 10 x 10 independent sampling window. The classification approach included two interdependent stages: 1) a supervised maximum a posteriori Bayesian approach to classify the mean backscatter image into 5 general land cover categories of forest, savannah, inundated, white sand, and anthropogenic vegetation classes, and 2) a texture measure decision rule approach to further discriminate subcategory classes based on taxonomic information and biomass levels. Fourteen classes were successfully separated at 1 km scale. The results were verified by examining the accuracy of the approach by comparison with the IBGE and the AVHRR 1 km resolution land cover maps.

  6. A scheme of pedagogical problems solving in kinematic to observe toulmin argumentation feasibility

    NASA Astrophysics Data System (ADS)

    Manurung, Sondang R.; Rustaman, Nuryani Y.; Siregar, Nelson

    2013-09-01

    The purpose of this study is to determine the students' ability to map out the problem solving. This paper would show a schematic template map used to analyze the students' tasks in performing problem solving pedagogically. Scheme of problem solving map of student was undertaken based on Toulmin Argumentation Pattern (TAP) argumentative discourse. The samples of this study were three work-sheets of physics education students who represented the upper, middle and lower levels of class in one LPTK in Medan. The instrument of this study was an essay test in kinematics topic. The data analyses were performed with schematic template map in order to know the students' ability in mapping the problem solving. The results showed that the student in the Upper level of class followed the appropriate direction pattern, while two others students could not followed the pattern exactly.

  7. Student Engagement and Marketing Classes

    ERIC Educational Resources Information Center

    Taylor, Steven A.; Hunter, Gary L.; Melton, Horace; Goodwin, Stephen A.

    2011-01-01

    A study is reported that investigates the goals underlying undergraduate students' engagement in their major classes, nonmajor classes, and in extracurricular activities. The qualitative study employs both focus groups and goal-mapping exercises. The results suggest that students tend to focus on utilitarian, attribute-level considerations mainly…

  8. Comparing Two Forms of Concept Map Critique Activities to Facilitate Knowledge Integration Processes in Evolution Education

    ERIC Educational Resources Information Center

    Schwendimann, Beat A.; Linn, Marcia C.

    2016-01-01

    Concept map activities often lack a subsequent revision step that facilitates knowledge integration. This study compares two collaborative critique activities using a Knowledge Integration Map (KIM), a form of concept map. Four classes of high school biology students (n?=?81) using an online inquiry-based learning unit on evolution were assigned…

  9. Subpixel Mapping of Hyperspectral Image Based on Linear Subpixel Feature Detection and Object Optimization

    NASA Astrophysics Data System (ADS)

    Liu, Zhaoxin; Zhao, Liaoying; Li, Xiaorun; Chen, Shuhan

    2018-04-01

    Owing to the limitation of spatial resolution of the imaging sensor and the variability of ground surfaces, mixed pixels are widesperead in hyperspectral imagery. The traditional subpixel mapping algorithms treat all mixed pixels as boundary-mixed pixels while ignoring the existence of linear subpixels. To solve this question, this paper proposed a new subpixel mapping method based on linear subpixel feature detection and object optimization. Firstly, the fraction value of each class is obtained by spectral unmixing. Secondly, the linear subpixel features are pre-determined based on the hyperspectral characteristics and the linear subpixel feature; the remaining mixed pixels are detected based on maximum linearization index analysis. The classes of linear subpixels are determined by using template matching method. Finally, the whole subpixel mapping results are iteratively optimized by binary particle swarm optimization algorithm. The performance of the proposed subpixel mapping method is evaluated via experiments based on simulated and real hyperspectral data sets. The experimental results demonstrate that the proposed method can improve the accuracy of subpixel mapping.

  10. A Direct Mapping of Max k-SAT and High Order Parity Checks to a Chimera Graph

    PubMed Central

    Chancellor, N.; Zohren, S.; Warburton, P. A.; Benjamin, S. C.; Roberts, S.

    2016-01-01

    We demonstrate a direct mapping of max k-SAT problems (and weighted max k-SAT) to a Chimera graph, which is the non-planar hardware graph of the devices built by D-Wave Systems Inc. We further show that this mapping can be used to map a similar class of maximum satisfiability problems where the clauses are replaced by parity checks over potentially large numbers of bits. The latter is of specific interest for applications in decoding for communication. We discuss an example in which the decoding of a turbo code, which has been demonstrated to perform near the Shannon limit, can be mapped to a Chimera graph. The weighted max k-SAT problem is the most general class of satisfiability problems, so our result effectively demonstrates how any satisfiability problem may be directly mapped to a Chimera graph. Our methods faithfully reproduce the low energy spectrum of the target problems, so therefore may also be used for maximum entropy inference. PMID:27857179

  11. A simultaneous multichannel monophasic action potential electrode array for in vivo epicardial repolarization mapping.

    PubMed

    Sahakian, A V; Peterson, M S; Shkurovich, S; Hamer, M; Votapka, T; Ji, T; Swiryn, S

    2001-03-01

    While the recording of extracellular monophasic action potentials (MAPs) from single epicardial or endocardial sites has been performed for over a century, we are unaware of any previous successful attempt to record MAPs simultaneously from a large number of sites in vivo. We report here the design and validation of an array of MAP electrodes which records both depolarization and repolarization simultaneously at up to 16 epicardial sites in a square array on the heart in vivo. The array consists of 16 sintered Ag-AgCl electrodes mounted in a common housing with individual suspensions allowing each electrode to exert a controlled pressure on the epicardial surface. The electrodes are arranged in a square array, with each quadrant of four having an additional recessed sintered Ag-AgCl reference electrode at its center. A saline-soaked sponge establishes ionic contact between the reference electrodes and the tissue. The array was tested on six anesthetized open-chested pigs. Simultaneous diagnostic-quality MAP recordings were obtained from up to 13 out of 16 ventricular sites. Ventricular MAPs had amplitudes of 10-40 mV with uniform morphologies and stable baselines for up to 30 min. MAP duration at 90% repolarization was measured and shown to vary as expected with cycle length during sustained pacing. The relationship between MAP duration and effective refractory period was also confirmed. The ability of the array to detect local differences in repolarization was tested in two ways. Placement of the array straddling the atrioventricular (AV) junction yielded simultaneous atrial or ventricular recordings at corresponding sites during 1:1 and 2:1 AV conduction. Localized ischemia via constriction of a coronary artery branch resulted in shortening of the repolarization phase at the ischemic, but not the nonischemic, sites. In conclusion, these results indicate that the simultaneous multichannel MAP electrode array is a viable method for in vivo epicardial repolarization mapping. The array has the potential to be expanded to increase the number of sites and spatial resolution.

  12. Evaluating Technology in Schools: Implications of a Research Study.

    ERIC Educational Resources Information Center

    Kell, Diane; And Others

    This report provides an overview of the issues related to a recently completed study of the use of computers in primary classrooms in six school districts and some special program classes, i.e., K-2 English-as-a-Second-Language and bilingual classes at one study site and Chapter 1 pullout classes for grades K-5 at another site. The sites used were…

  13. Whole Sky Imager Characterization of Sky Obscuration by Clouds for the Starfire Optical Range

    DTIC Science & Technology

    2010-01-11

    9.3 Further Algorithm Development and Evaluation 58 9.4 Analysis of the Data Base 58 10.0 DISCUSSION OF CONTRACT REQUIREMENTS 59 10.1...clouds, Site 5 Feb 14 2008 0900 28 21 Transmittance map, Moonlight , clear sky, Site 5 Feb 3 2008 0700 28 22 Transmittance map, Moonlight , thin...clouds, Site 5 Feb 8 2008 1200 29 23 Transmittance map, Moonlight , broken clouds, Site 5 Feb 2 2008 0800 29 24 Cloud Algorithm Results, Moonlight

  14. Differential affinities of molindone, metoclopramide and domperidone for classes of [3H]spiroperidol binding sites in rat striatum: evidence for pharmacologically distinct classes of receptors.

    PubMed

    Rosenfeld, M R; Dvorkin, B; Klein, P N; Makman, M H

    1982-03-04

    Rat striatum contains two populations of dopaminergic [3H]spiroperidol binding sites. The two populations are similar in their affinities for chlorpromazine and dopamine. Only one population, that with a somewhat higher affinity for spiroperidol itself, exhibits high affinity for the selective D2 antagonists molindone, metoclopramide and domperidone. Hence, this population may represent D2 receptor sites. The other larger population may represent either a separate class of receptor sites or a different form of D2 receptor sites.

  15. Phenotypic and genotypic expression of self-incompatibility haplotypes in Arabidopsis lyrata suggests unique origin of alleles in different dominance classes.

    PubMed

    Prigoda, Nadia L; Nassuth, Annette; Mable, Barbara K

    2005-07-01

    The highly divergent alleles of the SRK gene in outcrossing Arabidopsis lyrata have provided important insights into the evolutionary history of self-incompatibility (SI) alleles and serve as an ideal model for studies of the evolutionary and molecular interactions between alleles in cell-cell recognition systems in general. One tantalizing question is how new specificities arise in systems that require coordination between male and female components. Allelic recruitment via gene conversion has been proposed as one possibility, based on the division of DNA sequences at the SRK locus into two distinctive groups: (1) sequences whose relationships are not well resolved and display the long branch lengths expected for a gene under balancing selection (Class A); and (2) sequences falling into a well-supported group with shorter branch lengths (Class B) that are closely related to an unlinked paralogous locus. The purpose of this study was to determine if differences in phenotype (site of expression assayed using allele-specific reverse transcription-polymerase chain reaction) or function (dominance relationships assayed through controlled pollinations) accompany the sequence-based classification. Expression of Class A alleles was restricted to floral tissues, as predicted for genes involved in the SI response. In contrast, Class B alleles, despite being tightly linked to the SI phenotype, were unexpectedly expressed in both leaves and floral tissues; the same pattern found for a related unlinked paralogous sequence. Whereas Class A included haplotypes in three different dominance classes, all Class B haplotypes were found to be recessive to all except one Class A haplotype. In addition, mapping of expression and dominance patterns onto an S-domain-based genealogy suggested that allelic dominance may be determined more by evolutionary history than by frequency-dependent selection for lowered dominance as some theories suggest. The possibility that interlocus gene conversion might have contributed to allelic diversity is discussed.

  16. Biomedical Terminology Mapper for UML projects.

    PubMed

    Thibault, Julien C; Frey, Lewis

    2013-01-01

    As the biomedical community collects and generates more and more data, the need to describe these datasets for exchange and interoperability becomes crucial. This paper presents a mapping algorithm that can help developers expose local implementations described with UML through standard terminologies. The input UML class or attribute name is first normalized and tokenized, then lookups in a UMLS-based dictionary are performed. For the evaluation of the algorithm 142 UML projects were extracted from caGrid and automatically mapped to National Cancer Institute (NCI) terminology concepts. Resulting mappings at the UML class and attribute levels were compared to the manually curated annotations provided in caGrid. Results are promising and show that this type of algorithm could speed-up the tedious process of mapping local implementations to standard biomedical terminologies.

  17. Biomedical Terminology Mapper for UML projects

    PubMed Central

    Thibault, Julien C.; Frey, Lewis

    As the biomedical community collects and generates more and more data, the need to describe these datasets for exchange and interoperability becomes crucial. This paper presents a mapping algorithm that can help developers expose local implementations described with UML through standard terminologies. The input UML class or attribute name is first normalized and tokenized, then lookups in a UMLS-based dictionary are performed. For the evaluation of the algorithm 142 UML projects were extracted from caGrid and automatically mapped to National Cancer Institute (NCI) terminology concepts. Resulting mappings at the UML class and attribute levels were compared to the manually curated annotations provided in caGrid. Results are promising and show that this type of algorithm could speed-up the tedious process of mapping local implementations to standard biomedical terminologies. PMID:24303278

  18. Lunar Observer Laser Altimeter observations for lunar base site selection

    NASA Technical Reports Server (NTRS)

    Garvin, James B.; Bufton, Jack L.

    1992-01-01

    One of the critical datasets for optimal selection of future lunar landing sites is local- to regional-scale topography. Lunar base site selection will require such data for both engineering and scientific operations purposes. The Lunar Geoscience Orbiter or Lunar Observer is the ideal precursory science mission from which to obtain this required information. We suggest that a simple laser altimeter instrument could be employed to measure local-scale slopes, heights, and depths of lunar surface features important to lunar base planning and design. For this reason, we have designed and are currently constructing a breadboard of a Lunar Observer Laser Altimeter (LOLA) instrument capable of acquiring contiguous-footprint topographic profiles with both 30-m and 300-m along-track resolution. This instrument meets all the severe weight, power, size, and data rate limitations imposed by Observer-class spacecraft. In addition, LOLA would be capable of measuring the within-footprint vertical roughness of the lunar surface, and the 1.06-micron relative surface reflectivity at normal incidence. We have used airborne laser altimeter data for a few representative lunar analog landforms to simulate and analyze LOLA performance in a 100-km lunar orbit. We demonstrate that this system in its highest resolution mode (30-m diameter footprints) would quantify the topography of all but the very smallest lunar landforms. At its global mapping resolution (300-m diameter footprints), LOLA would establish the topographic context for lunar landing site selection by providing the basis for constructing a 1-2 km spatial resolution global, geodetic topographic grid that would contain a high density of observations (e.g., approximately 1000 observations per each 1 deg by 1 deg cell at the lunar equator). The high spatial and vertical resolution measurements made with a LOLA-class instrument on a precursory Lunar Observer would be highly synergistic with high-resolution imaging datasets, and will allow for direct quantification of critical slopes, heights, and depths of features visible in images of potential lunar base sites.

  19. Quantitative susceptibility mapping of human brain at 3T: a multisite reproducibility study.

    PubMed

    Lin, P-Y; Chao, T-C; Wu, M-L

    2015-03-01

    Quantitative susceptibility mapping of the human brain has demonstrated strong potential in examining iron deposition, which may help in investigating possible brain pathology. This study assesses the reproducibility of quantitative susceptibility mapping across different imaging sites. In this study, the susceptibility values of 5 regions of interest in the human brain were measured on 9 healthy subjects following calibration by using phantom experiments. Each of the subjects was imaged 5 times on 1 scanner with the same procedure repeated on 3 different 3T systems so that both within-site and cross-site quantitative susceptibility mapping precision levels could be assessed. Two quantitative susceptibility mapping algorithms, similar in principle, one by using iterative regularization (iterative quantitative susceptibility mapping) and the other with analytic optimal solutions (deterministic quantitative susceptibility mapping), were implemented, and their performances were compared. Results show that while deterministic quantitative susceptibility mapping had nearly 700 times faster computation speed, residual streaking artifacts seem to be more prominent compared with iterative quantitative susceptibility mapping. With quantitative susceptibility mapping, the putamen, globus pallidus, and caudate nucleus showed smaller imprecision on the order of 0.005 ppm, whereas the red nucleus and substantia nigra, closer to the skull base, had a somewhat larger imprecision of approximately 0.01 ppm. Cross-site errors were not significantly larger than within-site errors. Possible sources of estimation errors are discussed. The reproducibility of quantitative susceptibility mapping in the human brain in vivo is regionally dependent, and the precision levels achieved with quantitative susceptibility mapping should allow longitudinal and multisite studies such as aging-related changes in brain tissue magnetic susceptibility. © 2015 by American Journal of Neuroradiology.

  20. Suitable Site Selection of Small Dams Using Geo-Spatial Technique: a Case Study of Dadu Tehsil, Sindh

    NASA Astrophysics Data System (ADS)

    Khalil, Zahid

    2016-07-01

    Decision making about identifying suitable sites for any project by considering different parameters, is difficult. Using GIS and Multi-Criteria Analysis (MCA) can make it easy for those projects. This technology has proved to be an efficient and adequate in acquiring the desired information. In this study, GIS and MCA were employed to identify the suitable sites for small dams in Dadu Tehsil, Sindh. The GIS software is used to create all the spatial parameters for the analysis. The parameters that derived are slope, drainage density, rainfall, land use / land cover, soil groups, Curve Number (CN) and runoff index with a spatial resolution of 30m. The data used for deriving above layers include 30 meter resolution SRTM DEM, Landsat 8 imagery, and rainfall from National Centre of Environment Prediction (NCEP) and soil data from World Harmonized Soil Data (WHSD). Land use/Land cover map is derived from Landsat 8 using supervised classification. Slope, drainage network and watershed are delineated by terrain processing of DEM. The Soil Conservation Services (SCS) method is implemented to estimate the surface runoff from the rainfall. Prior to this, SCS-CN grid is developed by integrating the soil and land use/land cover raster. These layers with some technical and ecological constraints are assigned weights on the basis of suitability criteria. The pair wise comparison method, also known as Analytical Hierarchy Process (AHP) is took into account as MCA for assigning weights on each decision element. All the parameters and group of parameters are integrated using weighted overlay in GIS environment to produce suitable sites for the Dams. The resultant layer is then classified into four classes namely, best suitable, suitable, moderate and less suitable. This study reveals a contribution to decision making about suitable sites analysis for small dams using geo-spatial data with minimal amount of ground data. This suitability maps can be helpful for water resource management organizations in determination of feasible rainwater harvesting structures (RWH).

  1. Characterization of post-fire surface cover, soils, and burn severity at the Cerro Grande Fire, New Mexico, using hyperspectral and multispectral remote sensing

    USGS Publications Warehouse

    Kokaly, R.F.; Rockwell, B.W.; Haire, S.L.; King, T.V.V.

    2007-01-01

    Forest fires leave behind a changed ecosystem with a patchwork of surface cover that includes ash, charred organic matter, soils and soil minerals, and dead, damaged, and living vegetation. The distributions of these materials affect post-fire processes of erosion, nutrient cycling, and vegetation regrowth. We analyzed high spatial resolution (2.4??m pixel size) Airborne Visible and Infrared Imaging Spectrometer (AVIRIS) data collected over the Cerro Grande fire, to map post-fire surface cover into 10 classes, including ash, soil minerals, scorched conifer trees, and green vegetation. The Cerro Grande fire occurred near Los Alamos, New Mexico, in May 2000. The AVIRIS data were collected September 3, 2000. The surface cover map revealed complex patterns of ash, iron oxide minerals, and clay minerals in areas of complete combustion. Scorched conifer trees, which retained dry needles heated by the fire but not fully combusted by the flames, were found to cover much of the post-fire landscape. These scorched trees were found in narrow zones at the edges of completely burned areas. A surface cover map was also made using Landsat Enhanced Thematic Mapper plus (ETM+) data, collected September 5, 2000, and a maximum likelihood, supervised classification. When compared to AVIRIS, the Landsat classification grossly overestimated cover by dry conifer and ash classes and severely underestimated soil and green vegetation cover. In a comparison of AVIRIS surface cover to the Burned Area Emergency Rehabilitation (BAER) map of burn severity, the BAER high burn severity areas did not capture the variable patterns of post-fire surface cover by ash, soil, and scorched conifer trees seen in the AVIRIS map. The BAER map, derived from air photos, also did not capture the distribution of scorched trees that were observed in the AVIRIS map. Similarly, the moderate severity class of Landsat-derived burn severity maps generated from the differenced Normalized Burn Ratio (dNBR) calculation had low agreement with the AVIRIS classes of scorched conifer trees. Burn severity and surface cover images were found to contain complementary information, with the dNBR map presenting an image of degree of change caused by fire and the AVIRIS-derived map showing specific surface cover resulting from fire.

  2. Neighborhood size of training data influences soil map disaggregation

    USDA-ARS?s Scientific Manuscript database

    Soil class mapping relies on the ability of sample locations to represent portions of the landscape with similar soil types; however, most digital soil mapping (DSM) approaches intersect sample locations with one raster pixel per covariate layer regardless of pixel size. This approach does not take ...

  3. The Design of Tactile Thematic Symbols

    ERIC Educational Resources Information Center

    Lawrence, Megan M.; Lobben, Amy K.

    2011-01-01

    The study reported here investigated the design and legibility of tactile thematic maps, focusing on symbolization and the comprehension of spatial patterns on the maps. The results indicate that discriminable and effective tactile thematic maps can be produced using classed data with a microcapsule paper production method. The participants…

  4. The Effects of Using Concept Mapping for Improving Advanced Level Biology Students' Lower- and Higher-Order Cognitive Skills

    NASA Astrophysics Data System (ADS)

    Bramwell-Lalor, Sharon; Rainford, Marcia

    2014-03-01

    This paper reports on teachers' use of concept mapping as an alternative assessment strategy in advanced level biology classes and its effects on students' cognitive skills on selected biology concepts. Using a mixed methods approach, the study employed a pre-test/post-test quasi-experimental design involving 156 students and 8 teachers from intact classes. A researcher-constructed Biology Cognitive Skills Test was used to collect the quantitative data. Qualitative data were collected through interviews and students' personal documents. The data showed that the participants utilized concept mapping in various ways and they described positive experiences while being engaged in its use. The main challenge cited by teachers was the limited time available for more consistent use. The results showed that the use of concept mapping in advanced level biology can lead to learning gains that exceed those achieved in classes where mainly traditional methods are used. The students in the concept mapping experimental groups performed significantly better than their peers in the control group on both the lower-order (F(1) = 21.508; p < .001) and higher-order (F(1) = 42.842, p < .001) cognitive items of the biology test. A mean effect size of .56 was calculated representing the contribution of treatment to the students' performance on the test items.

  5. An Anomalous Noise Events Detector for Dynamic Road Traffic Noise Mapping in Real-Life Urban and Suburban Environments.

    PubMed

    Socoró, Joan Claudi; Alías, Francesc; Alsina-Pagès, Rosa Ma

    2017-10-12

    One of the main aspects affecting the quality of life of people living in urban and suburban areas is their continued exposure to high Road Traffic Noise (RTN) levels. Until now, noise measurements in cities have been performed by professionals, recording data in certain locations to build a noise map afterwards. However, the deployment of Wireless Acoustic Sensor Networks (WASN) has enabled automatic noise mapping in smart cities. In order to obtain a reliable picture of the RTN levels affecting citizens, Anomalous Noise Events (ANE) unrelated to road traffic should be removed from the noise map computation. To this aim, this paper introduces an Anomalous Noise Event Detector (ANED) designed to differentiate between RTN and ANE in real time within a predefined interval running on the distributed low-cost acoustic sensors of a WASN. The proposed ANED follows a two-class audio event detection and classification approach, instead of multi-class or one-class classification schemes, taking advantage of the collection of representative acoustic data in real-life environments. The experiments conducted within the DYNAMAP project, implemented on ARM-based acoustic sensors, show the feasibility of the proposal both in terms of computational cost and classification performance using standard Mel cepstral coefficients and Gaussian Mixture Models (GMM). The two-class GMM core classifier relatively improves the baseline universal GMM one-class classifier F1 measure by 18.7% and 31.8% for suburban and urban environments, respectively, within the 1-s integration interval. Nevertheless, according to the results, the classification performance of the current ANED implementation still has room for improvement.

  6. Lithologic mapping of the Mordor, NT, Australia ultramafic complex by using the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER)

    USGS Publications Warehouse

    Rowan, L.C.; Mars, J.C.; Simpson, C.J.

    2005-01-01

    Spectral measurements made in the Mordor Pound, NT, Australia study area using the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER), in the laboratory and in situ show dominantly Al-OH and ferric-iron VNIR-SWIR absorption features in felsic rock spectra and ferrous-iron and Fe,Mg-OH features in the mafic-ultramafic rock spectra. ASTER ratio images, matched-filter, and spectral-angle mapper processing (SAM) were evaluated for mapping the lithologies. Matched-filter processing in which VNIR + SWIR image spectra were used for reference resulted in 4 felsic classes and 4 mafic-ultramafic classes based on Al-OH or Fe,Mg-OH absorption features and, in some, subtle reflectance differences related to differential weathering and vegetation. These results were similar to those obtained by match-filter analysis of HyMap data from a previous study, but the units were more clearly demarcated in the HyMap image. ASTER TIR spectral emittance data and laboratory emissivity measurements document a wide wavelength range of Si-O spectral features, which reflect the lithological diversity of the Mordor ultramafic complex and adjacent rocks. SAM processing of the spectral emittance data distinguished 2 classes representing the mafic-ultramafic rocks and 4 classes comprising the quartzose to intermediate composition rocks. Utilization of the complementary attributes of the spectral reflectance and spectral emittance data resulted in discrimination of 4 mafic-ultramafic categories; 3 categories of alluvial-colluvial deposits; and a significantly more completely mapped quartzite unit than could be accomplished by using either data set alone. ?? 2005 Elsevier Inc. All rights reserved.

  7. Nuclear binding of progesterone in hen oviduct. Binding to multiple sites in vitro.

    PubMed Central

    Pikler, G M; Webster, R A; Spelsberg, T C

    1976-01-01

    Steroid hormones, including progesterone, are known to bind with high affinity (Kd approximately 1x10(-10)M) to receptor proteins once they enter target cells. This complex (the progesterone-receptor) then undergoes a temperature-and/or salt-dependent activation which allows it to migrate to the cell nucleus and to bind to the deoxyribonucleoproteins. The present studies demonstrate that binding the hormone-receptor complex in vitro to isolated nuclei from the oviducts of laying hens required the same conditions as do other studies of bbinding in vitro reported previously, e.g. the hormone must be complexed to intact and activated receptor. The assay of the nuclear binding by using multiple concentrations of progesterone receptor reveals the presence of more than one class of binding site in the oviduct nuclei. The affinity of each of these classes of binding sites range from Kd approximately 1x10(-9)-1x10(-8)M. Assays using free steroid (not complexed with receptor) show no binding to these sites. The binding to each of the classes of sites, displays a differential stability to increasing ionic concentrations, suggesting primarily an ionic-type interaction for all classes. Only the highest-affinity class of binding site is capable of binding progesterone receptor under physioligical-saline conditions. This class represent 6000-10000 sites per cell nucleus and resembles the sites detected in vivo (Spelsberg, 1976, Biochem. J. 156, 391-398) which cause maximal transcriptional response when saturated with the progesterone receptor. The multiple binding sites for the progesterone receptor either are not present or are found in limited numbers in the nuclei of non-target organs. Differences in extent of binding to the nuclear material between a target tissue (oviduct) and other tissues (spleen or erythrocyte) are markedly dependent on the ionic conditions, and are probably due to binding to different classes of sites in the nuclei. PMID:182147

  8. Predicting macropores in space and time by earthworms and abiotic controls

    NASA Astrophysics Data System (ADS)

    Hohenbrink, Tobias Ludwig; Schneider, Anne-Kathrin; Zangerlé, Anne; Reck, Arne; Schröder, Boris; van Schaik, Loes

    2017-04-01

    Macropore flow increases infiltration and solute leaching. The macropore density and connectivity, and thereby the hydrological effectiveness, vary in space and time due to earthworms' burrowing activity and their ability to refill their burrows in order to survive drought periods. The aim of our study was to predict the spatiotemporal variability of macropore distributions by a set of potentially controlling abiotic variables and abundances of different earthworm species. We measured earthworm abundances and effective macropore distributions using tracer rainfall infiltration experiments in six measurement campaigns during one year at six field sites in Luxembourg. Hydrologically effective macropores were counted in three soil depths (3, 10, 30 cm) and distinguished into three diameter classes (<2, 2-6, >6 mm). Earthworms were sampled and determined to species-level. In a generalized linear modelling framework, we related macropores to potential spatial and temporal controlling factors. Earthworm species such as Lumbricus terrestris and Aporrectodea longa, local abiotic site conditions (land use, TWI, slope), temporally varying weather conditions (temperature, humidity, precipitation) and soil moisture affected the number of effective macropores. Main controlling factors and explanatory power of the models (uncertainty and model performance) varied depending on the depth and diameter class of macropores. We present spatiotemporal predictions of macropore density by daily-resolved, one year time series of macropore numbers and maps of macropore distributions at specific dates in a small-scale catchment with 5 m resolution.

  9. Identity, Meaning, and Engagement with School: A Native American Student's Composition of a Life Map in a Senior English Class

    ERIC Educational Resources Information Center

    Smagorinsky, Peter; Anglin, Joanna L.; O'Donnell-Allen, Cindy

    2012-01-01

    This case study of a Native American high school senior focuses on one of the final assignments he completed before dropping out of school early in the school year. The task was to draw a life map--a nonverbal text that identified 10 key life events on his journey to that point--as part of a larger unit on identity for his senior English class.…

  10. An open source multivariate framework for n-tissue segmentation with evaluation on public data.

    PubMed

    Avants, Brian B; Tustison, Nicholas J; Wu, Jue; Cook, Philip A; Gee, James C

    2011-12-01

    We introduce Atropos, an ITK-based multivariate n-class open source segmentation algorithm distributed with ANTs ( http://www.picsl.upenn.edu/ANTs). The Bayesian formulation of the segmentation problem is solved using the Expectation Maximization (EM) algorithm with the modeling of the class intensities based on either parametric or non-parametric finite mixtures. Atropos is capable of incorporating spatial prior probability maps (sparse), prior label maps and/or Markov Random Field (MRF) modeling. Atropos has also been efficiently implemented to handle large quantities of possible labelings (in the experimental section, we use up to 69 classes) with a minimal memory footprint. This work describes the technical and implementation aspects of Atropos and evaluates its performance on two different ground-truth datasets. First, we use the BrainWeb dataset from Montreal Neurological Institute to evaluate three-tissue segmentation performance via (1) K-means segmentation without use of template data; (2) MRF segmentation with initialization by prior probability maps derived from a group template; (3) Prior-based segmentation with use of spatial prior probability maps derived from a group template. We also evaluate Atropos performance by using spatial priors to drive a 69-class EM segmentation problem derived from the Hammers atlas from University College London. These evaluation studies, combined with illustrative examples that exercise Atropos options, demonstrate both performance and wide applicability of this new platform-independent open source segmentation tool.

  11. An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data

    PubMed Central

    Tustison, Nicholas J.; Wu, Jue; Cook, Philip A.; Gee, James C.

    2012-01-01

    We introduce Atropos, an ITK-based multivariate n-class open source segmentation algorithm distributed with ANTs (http://www.picsl.upenn.edu/ANTs). The Bayesian formulation of the segmentation problem is solved using the Expectation Maximization (EM) algorithm with the modeling of the class intensities based on either parametric or non-parametric finite mixtures. Atropos is capable of incorporating spatial prior probability maps (sparse), prior label maps and/or Markov Random Field (MRF) modeling. Atropos has also been efficiently implemented to handle large quantities of possible labelings (in the experimental section, we use up to 69 classes) with a minimal memory footprint. This work describes the technical and implementation aspects of Atropos and evaluates its performance on two different ground-truth datasets. First, we use the BrainWeb dataset from Montreal Neurological Institute to evaluate three-tissue segmentation performance via (1) K-means segmentation without use of template data; (2) MRF segmentation with initialization by prior probability maps derived from a group template; (3) Prior-based segmentation with use of spatial prior probability maps derived from a group template. We also evaluate Atropos performance by using spatial priors to drive a 69-class EM segmentation problem derived from the Hammers atlas from University College London. These evaluation studies, combined with illustrative examples that exercise Atropos options, demonstrate both performance and wide applicability of this new platform-independent open source segmentation tool. PMID:21373993

  12. Developing a climate-based risk map of fascioliasis outbreaks in Iran.

    PubMed

    Halimi, Mansour; Farajzadeh, Manuchehr; Delavari, Mahdi; Arbabi, Mohsen

    2015-01-01

    The strong relationship between climate and fascioliasis outbreaks enables the development of climate-based models to estimate the potential risk of fascioliasis outbreaks. This work aims to develop a climate-based risk map of fascioliasis outbreaks in Iran using Ollerenshaw's fascioliasis risk index incorporating geographical information system (GIS). Using this index, a risk map of fascioliasis outbreaks for the entire country was developed. We determined that the country can be divided into 4 fascioliasis outbreak risk categories. Class 1, in which the Mt value is less than 100, includes more than 0.91 of the country's area. The climate in this class is not conducive to fascioliasis outbreaks in any month. Dryness and low temperature in the wet season (December to April) are the key barriers against fascioliasis outbreaks in this class. The risk map developed based on climatic factors indicated that only 0.03 of the country's area, including Gilan province in the northern region of Iran, is highly suitable to fascioliasis outbreaks during September to January. The Mt value is greater than 500 in this class. Heavy rainfall in the summer and fall, especially in Rasht, Astara and Bandar Anzaly (≥ 1000 mm/year), creates more suitable breeding places for snail intermediate hosts. Copyright © 2015 King Saud Bin Abdulaziz University for Health Sciences. Published by Elsevier Ltd. All rights reserved.

  13. Central Atlantic regional ecological test site: A prototype regional environmental information system

    NASA Technical Reports Server (NTRS)

    Alexander, R. H. (Principal Investigator)

    1973-01-01

    The author has identified the following significant results. A comparison of photomorphic regions from an uncontrolled ERTS-1 mosaic of CARETS to land use areas on a map published in the National Atlas revealed close correlations in non-urban regions. Such regional scale analysis of ERTS-1 data has the potential for providing an economical sampling strategy for selecting sites for more detailed field measurements if other environmental variables can be correlated with patterns on ERTS-1 imagery. ERTS-1 imagery has also revealed for the first time the appearance of CARETS during the winter months. Investigators have identified extensive areas of conifers, which have previously been indistinguishable from deciduous vegetation. Imagery has also shown very clearly the extent of snow cover at a particular time over the region. The evaluation of ERTS-1 imagery used for the land use mapping of the shore zone of CARETS, has shown that the presence or absence of elements of an hierarchal system of shoreline landforms can help identify areas of potential rapid change. Changes in land use class distributions on the Barrier Islands signify the environmental response to natural and man-caused processes. Both environmental vulnerability and sensitivity can be estimated from the repetitive ERTS-1 coverage of long reaches of the CARETS coast. Results indicate potential applications to land use planning, management, and regional environmental quality analysis.

  14. Inhibition of Non-ATG Translational Events in Cells via Covalent Small Molecules Targeting RNA.

    PubMed

    Yang, Wang-Yong; Wilson, Henry D; Velagapudi, Sai Pradeep; Disney, Matthew D

    2015-04-29

    One major class of disease-causing RNAs is expanded repeating transcripts. These RNAs cause diseases via multiple mechanisms, including: (i) gain-of-function, in which repeating RNAs bind and sequester proteins involved in RNA biogenesis and (ii) repeat associated non-ATG (RAN) translation, in which repeating transcripts are translated into toxic proteins without use of a canonical, AUG, start codon. Herein, we develop and study chemical probes that bind and react with an expanded r(CGG) repeat (r(CGG)(exp)) present in a 5' untranslated region that causes fragile X-associated tremor/ataxia syndrome (FXTAS). Reactive compounds bind to r(CGG)(exp) in cellulo as shown with Chem-CLIP-Map, an approach to map small molecule binding sites within RNAs in cells. Compounds also potently improve FXTAS-associated pre-mRNA splicing and RAN translational defects, while not affecting translation of the downstream open reading frame. In contrast, oligonucleotides affect both RAN and canonical translation when they bind to r(CGG)(exp), which is mechanistically traced to a decrease in polysome loading. Thus, designer small molecules that react with RNA targets can be used to profile the RNAs to which they bind in cells, including identification of binding sites, and can modulate several aspects of RNA-mediated disease pathology in a manner that may be more beneficial than oligonucleotides.

  15. Reflections on the "Site of Struggle": Girls' Experience of Secondary Education in the Late 1950s

    ERIC Educational Resources Information Center

    Spencer, Stephanie

    2004-01-01

    Brian Simon used the phrase 'site of struggle' to describe the class-based inequalities that were played out in the provisions for English compulsory education. In the nineteenth century, the growth of the state system for the working class alongside the predominantly middle-class independent sector simply confirmed existing class hierarchies with…

  16. Generating a National Land Cover Dataset for Mexico at 30m Spatial Resolution in the Framework of the NALCMS Project.

    NASA Astrophysics Data System (ADS)

    Llamas, R. M.; Colditz, R. R.; Ressl, R.; Jurado Cruz, D. A.; Argumedo, J.; Victoria, A.; Meneses, C.

    2017-12-01

    The North American Land Change Monitoring System (NALCMS) is a tri-national initiative for mapping land cover across Mexico, United States and Canada, integrating efforts of institutions from the three countries. At the continental scale the group released land cover and change maps derived from MODIS image mosaics at 250m spatial resolution for 2005 and 2010. Current efforts are based on 30m Landsat images for 2010 ± 1 year. Each country uses its own mapping approach and sources for ancillary data, while ensuring that maps are produced in a coherent fashion across the continent. This paper presents the methodology and final land cover map of Mexico for the year 2010 that was later integrated into a continental map. The principal input for Mexico was the Monitoring Activity Data for Mexico (MAD-MEX) land cover map (version 4.3), derived from all available mostly cloud-free images for the year 2010. A total of 35 classes were regrouped to 15 classes of the NALCMS legend present in Mexico. Next, various issues of the automatically generated MAD-MEX land cover mosaic were corrected, such as: filling areas of no data due no cloud-free observation or gaps in Landsat 7 ETM+ images, filling inland water bodies which were left unclassified due to masking issues, relabeling isolated unclassified of falsely classified pixels, structural mislabeling due to data gaps, reclassifying areas of adjacent scenes with significant class disagreements and correcting obvious misclassifications, mostly of water and urban areas. In a second step minor missing areas and rare class snow and ice were digitized and a road network was added. A product such as NALCMS land cover map at 30m for North America is an unprecedented effort and will be without doubt an important source of information for many users around the world who need coherent land cover data over a continental domain as an input for a wide variety of environmental studies. The product release to the general public is expected by late summer of 2017 and will be made available through the Commission for Environmental Cooperation (CEC) at www.cec.org

  17. Site-specific Microtubule-associated Protein 4 Dephosphorylation Causes Microtubule Network Densification in Pressure Overload Cardiac Hypertrophy*

    PubMed Central

    Chinnakkannu, Panneerselvam; Samanna, Venkatesababa; Cheng, Guangmao; Ablonczy, Zsolt; Baicu, Catalin F.; Bethard, Jennifer R.; Menick, Donald R.; Kuppuswamy, Dhandapani; Cooper, George

    2010-01-01

    In severe pressure overload-induced cardiac hypertrophy, a dense, stabilized microtubule network forms that interferes with cardiocyte contraction and microtubule-based transport. This is associated with persistent transcriptional up-regulation of cardiac α- and β-tubulin and microtubule-stabilizing microtubule-associated protein 4 (MAP4). There is also extensive microtubule decoration by MAP4, suggesting greater MAP4 affinity for microtubules. Because the major determinant of this affinity is site-specific MAP4 dephosphorylation, we characterized this in hypertrophied myocardium and then assessed the functional significance of each dephosphorylation site found by mimicking it in normal cardiocytes. We first isolated MAP4 from normal and pressure overload-hypertrophied feline myocardium; volume-overloaded myocardium, which has an equal degree and duration of hypertrophy but normal functional and cytoskeletal properties, served as a control for any nonspecific growth-related effects. After cloning cDNA-encoding feline MAP4 and obtaining its deduced amino acid sequence, we characterized by mass spectrometry any site-specific MAP4 dephosphorylation. Solely in pressure overload-hypertrophied myocardium, we identified striking MAP4 dephosphorylation at Ser-472 in the MAP4 N-terminal projection domain and at Ser-924 and Ser-1056 in the assembly-promoting region of the C-terminal microtubule-binding domain. Site-directed mutagenesis of MAP4 cDNA was then used to switch each serine to non-phosphorylatable alanine. Wild-type and mutated cDNAs were used to construct adenoviruses; microtubule network density, stability, and MAP4 decoration were assessed in normal cardiocytes following an equivalent level of MAP4 expression. The Ser-924 → Ala MAP4 mutant produced a microtubule phenotype indistinguishable from that seen in pressure overload hypertrophy, such that Ser-924 MAP4 dephosphorylation during pressure overload hypertrophy may be central to this cytoskeletal abnormality. PMID:20436166

  18. Cloud fraction at the ARM SGP site: reducing uncertainty with self-organizing maps

    NASA Astrophysics Data System (ADS)

    Kennedy, Aaron D.; Dong, Xiquan; Xi, Baike

    2016-04-01

    Instrument downtime leads to uncertainty in the monthly and annual record of cloud fraction (CF), making it difficult to perform time series analyses of cloud properties and perform detailed evaluations of model simulations. As cloud occurrence is partially controlled by the large-scale atmospheric environment, this knowledge is used to reduce uncertainties in the instrument record. Synoptic patterns diagnosed from the North American Regional Reanalysis (NARR) during the period 1997-2010 are classified using a competitive neural network known as the self-organizing map (SOM). The classified synoptic states are then compared to the Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) instrument record to determine the expected CF. A number of SOMs are tested to understand how the number of classes and the period of classifications impact the relationship between classified states and CFs. Bootstrapping is utilized to quantify the uncertainty of the instrument record when statistical information from the SOM is included. Although all SOMs significantly reduce the uncertainty of the CF record calculated in Kennedy et al. (Theor Appl Climatol 115:91-105, 2014), SOMs with a large number of classes and separated by month are required to produce the lowest uncertainty and best agreement with the annual cycle of CF. This result may be due to a manifestation of seasonally dependent biases in NARR. With use of the SOMs, the average uncertainty in monthly CF is reduced in half from the values calculated in Kennedy et al. (Theor Appl Climatol 115:91-105, 2014).

  19. Mapping shallow waters habitats using OBIA by applying several approaches of depth invariant index in North Kepulauan Seribu

    NASA Astrophysics Data System (ADS)

    Siregar, V. P.; Agus, S. B.; Subarno, T.; Prabowo, N. W.

    2018-05-01

    The availability of satellite imagery with a variety of spatial resolution, both free access and commercial become as an option in utilizing the remote sensing technology. Variability of the water column is one of the factors affecting the interpretation results when mapping marine shallow waters. This study aimed to evaluate the influence of water column correction (depth-invariant index) on the accuracy of shallow water habitat classification results using OBIA. This study was conducted in North of Kepulauan Seribu, precisely in Harapan Island and its surrounding areas. Habitat class schemes were based on field observations, which were then used to build habitat classes on satellite imagery. The water column correction was applied to the three pairs of SPOT-7 multispectral bands, which were subsequently used in object-based classification. Satellite image classification was performed with four different approaches, namely (i) using DII transformed bands with single pair band input (B1B2), (ii) multi pairs bands (B1B2, B1B3, and B2B3), (iii) combination of multi pairs band and initial bands, and (iv) only using initial bands. The accuracy test results of the four inputs show the values of Overall Accuracy and Kappa Statistics, respectively 55.84 and 0.48; 68.53 and 0.64; 78.68 and 0.76; 77.66 and 0.74. It shows that the best results when using DII and initial band combination for shallow water benthic classification in this study site.

  20. Mapping of risk prone areas of kala-azar (Visceral leishmaniasis) in parts of Bihar State, India: an RS and GIS approach.

    PubMed

    Sudhakar, S; Srinivas, T; Palit, A; Kar, S K; Battacharya, S K

    2006-09-01

    The kala-azar fever (Visceral leishmaniasis) is continuing unabated in India for over a century, now being largely confined to the eastern part of India mainly in Bihar state and to some extent in its bordering states like West Bengal and Uttar Pradesh. Two study sites namely Patepur block in Vaishali district with high endemicity in northern part and Lohardagga block in Lohardagga district with absolute non-endemicity in southern part of Bihar were selected for the study with the following objectives : (i) to study the macro-ecosystem in relation to distribution of vector -Phlebotomus argentipes; (ii) to identify/map the risk prone areas or villages in a block for quick remedial measures; and (iii) to make use of satellite remote sensing and GIS to demonstrate the utility for rapid assessment of landuse/landcover and their relation with the incidence of kalaazar leading to the mapping of risk prone areas. Indian Remote Sensing (IRS)-1D LISS III satellite data for the periods of March and November 2000 were analysed in Silicon graphic image processing system using ERDAS software. False color composites (FCC) were generated and landuse/landcover was assessed using Maximum likelihood supervised classification techniques based on ground truth training sets. During the study the GIS functions are used to quantify the remotely sensed landscape proportions of 5 km2 buffer surrounding each known group of villages of high occurrence of sandflies in endemic and nonendemic study sites. Instead of traditional ground based survey methods to vector surveillance, the present study used a combination of remote sensing (RS) and geographical information system (GIS) approach to develop landscape predictors of sandfly abundance-an indicator of human vector contact and as a measure of risk prone areas. Statistical analysis using the remotely sensed landscape variables showed that rural villages surrounded by higher proportion of transitional swamps with soft stemmed edible plants and banana, sugarcane plantations had higher sandfly abundance and would, therefore, be at higher risk prone areas for man-vector contact. The present study clearly brought out the usefulness of satellite remote sensing technology in generating the crucial information on spatial distribution of landuse/landcover classes with special emphasis on indicator landcover classes thereby helping in prioritising the area to identify risk prone areas of kala-azar through GIS application tools.

  1. Polygonal tundra geomorphological change in response to warming alters future CO2 and CH4 flux on the Barrow Peninsula.

    PubMed

    Lara, Mark J; McGuire, A David; Euskirchen, Eugenie S; Tweedie, Craig E; Hinkel, Kenneth M; Skurikhin, Alexei N; Romanovsky, Vladimir E; Grosse, Guido; Bolton, W Robert; Genet, Helene

    2015-04-01

    The landscape of the Barrow Peninsula in northern Alaska is thought to have formed over centuries to millennia, and is now dominated by ice-wedge polygonal tundra that spans drained thaw-lake basins and interstitial tundra. In nearby tundra regions, studies have identified a rapid increase in thermokarst formation (i.e., pits) over recent decades in response to climate warming, facilitating changes in polygonal tundra geomorphology. We assessed the future impact of 100 years of tundra geomorphic change on peak growing season carbon exchange in response to: (i) landscape succession associated with the thaw-lake cycle; and (ii) low, moderate, and extreme scenarios of thermokarst pit formation (10%, 30%, and 50%) reported for Alaskan arctic tundra sites. We developed a 30 × 30 m resolution tundra geomorphology map (overall accuracy:75%; Kappa:0.69) for our ~1800 km² study area composed of ten classes; drained slope, high center polygon, flat-center polygon, low center polygon, coalescent low center polygon, polygon trough, meadow, ponds, rivers, and lakes, to determine their spatial distribution across the Barrow Peninsula. Land-atmosphere CO2 and CH4 flux data were collected for the summers of 2006-2010 at eighty-two sites near Barrow, across the mapped classes. The developed geomorphic map was used for the regional assessment of carbon flux. Results indicate (i) at present during peak growing season on the Barrow Peninsula, CO2 uptake occurs at -902.3 10(6) gC-CO2 day(-1) (uncertainty using 95% CI is between -438.3 and -1366 10(6) gC-CO2 day(-1)) and CH4 flux at 28.9 10(6) gC-CH4 day(-1) (uncertainty using 95% CI is between 12.9 and 44.9 10(6) gC-CH4 day(-1)), (ii) one century of future landscape change associated with the thaw-lake cycle only slightly alter CO2 and CH4 exchange, while (iii) moderate increases in thermokarst pits would strengthen both CO2 uptake (-166.9 10(6) gC-CO2 day(-1)) and CH4 flux (2.8 10(6) gC-CH4 day(-1)) with geomorphic change from low to high center polygons, cumulatively resulting in an estimated negative feedback to warming during peak growing season. © 2014 John Wiley & Sons Ltd.

  2. Recombination between bacteriophage lambda and plasmid pBR322 in Escherichia coli.

    PubMed Central

    Pogue-Geile, K L; Dassarma, S; King, S R; Jaskunas, S R

    1980-01-01

    Recombinant lambda phages were isolated that resulted from recombination between the lambda genome and plasmid pBR322 in Escherichia coli, even though these deoxyribonucleic acids (DNAs) did not share extensive regions of homology. The characterization of these recombinant DNAs by heteroduplex analysis and restriction endonucleases is described. All but one of the recombinants appeared to have resulted from reciprocal recombination between a site on lambda DNA and a site on the plasmid. In general, there were two classes of recombinants. One class appeared to have resulted from recombination at the phage attachment site that probably resulted from lambda integration into secondary attachment sites on the plasmid. Seven different secondary attachment sites on pBR322 were found. The other class resulted from plasmid integration at other sites that were widely scattered on the lambda genome. For this second class of recombinants, more than one site on the plasmid could recombine with lambda DNA. Thus, the recombination did not appear to be site specific with respect to lambda or the plasmid. Possible mechanisms for generating these recombinants are discussed. Images PMID:6247334

  3. Modeling forest site productivity using mapped geospatial attributes within a South Carolina landscape, USA

    Treesearch

    B.R. Parresol; D.A. Scott; S.J. Zarnoch; L.A. Edwards; J.I. Blake

    2017-01-01

    Spatially explicit mapping of forest productivity is important to assess many forest management alternatives. We assessed the relationship between mapped variables and site index of forests ranging from southern pine plantations to natural hardwoods on a 74,000-ha landscape in South Carolina, USA. Mapped features used in the analysis were soil association, land use...

  4. Use of a remote computer terminal during field checking of Landsat digital maps

    USGS Publications Warehouse

    Robinove, Charles J.; Hutchinson, C.F.

    1978-01-01

    Field checking of small-scale land classification maps made digitally from Landsat data is facilitated by use of a remote portable teletypewriter terminal linked by teleplume to the IDIMS (Interactive Digital Image Manipulation System) at the EDC (EROS Data Center), Sioux Falls, S. Dak. When field checking of maps 20 miles northeast of Baker, Calif., during the day showed that changes in classification were needed, the terminal was used at night to combine image statistical files, remap portions of images, and produce new alphanumeric maps for field checking during the next day. The alphanumeric maps can be used without serious difficulty in location in the field even though the scale is distorted, and statistical files created during the field check can be used for full image classification and map output at the EDC. This process makes field checking faster than normal, provides interaction with the statistical data while in the field, and reduces to a minimum the number of trips needed to work interactively with the IDIMS at the EDC, thus saving significant amounts of time and money. The only significant problem is using telephone lines which at times create spurious characters in the printout or prevent the line feed (paper advance) signal from reaching the terminal, thus overprinting lines which should be sequential. We recommend that maps for field checking be made with more spectral classes than are expected because in the field it is much easier to group classes than to reclassify or separate classes when only the remote terminal is available for display.

  5. Estimating Vegetation Structure in African Savannas using High Spatial Resolution Imagery

    NASA Astrophysics Data System (ADS)

    Axelsson, C.; Hanan, N. P.

    2016-12-01

    High spatial resolution satellite imagery allows for detailed mapping of trees in savanna landscapes, including estimates of woody cover, tree densities, crown sizes, and the spatial pattern of trees. By linking these vegetation parameters to rainfall and soil properties we gain knowledge of how the local environment influences vegetation. A thorough understanding of the underlying ecosystem processes is key to assessing the future productivity and stability of these ecosystems. In this study, we have processed and analyzed hundreds of sites sampled from African savannas across a wide range of rainfall and soil conditions. The vegetation at each site is classified using unsupervised classification with manual assignment into woody, herbaceous and bare cover classes. A crown delineation method further divides the woody areas into individual tree crowns. The results show that rainfall, soil, and topography interactively influence vegetation structure. We see that both total rainfall and rainfall seasonality play important roles and that soil type influences woody cover and the sizes of tree crowns.

  6. Mechanism of activation of methyltransferases involved in translation by the Trm112 'hub' protein.

    PubMed

    Liger, Dominique; Mora, Liliana; Lazar, Noureddine; Figaro, Sabine; Henri, Julien; Scrima, Nathalie; Buckingham, Richard H; van Tilbeurgh, Herman; Heurgué-Hamard, Valérie; Graille, Marc

    2011-08-01

    Methylation is a common modification encountered in DNA, RNA and proteins. It plays a central role in gene expression, protein function and mRNA translation. Prokaryotic and eukaryotic class I translation termination factors are methylated on the glutamine of the essential and universally conserved GGQ motif, in line with an important cellular role. In eukaryotes, this modification is performed by the Mtq2-Trm112 holoenzyme. Trm112 activates not only the Mtq2 catalytic subunit but also two other tRNA methyltransferases (Trm9 and Trm11). To understand the molecular mechanisms underlying methyltransferase activation by Trm112, we have determined the 3D structure of the Mtq2-Trm112 complex and mapped its active site. Using site-directed mutagenesis and in vivo functional experiments, we show that this structure can also serve as a model for the Trm9-Trm112 complex, supporting our hypothesis that Trm112 uses a common strategy to activate these three methyltransferases.

  7. Mechanism of activation of methyltransferases involved in translation by the Trm112 ‘hub’ protein

    PubMed Central

    Liger, Dominique; Mora, Liliana; Lazar, Noureddine; Figaro, Sabine; Henri, Julien; Scrima, Nathalie; Buckingham, Richard H.; van Tilbeurgh, Herman; Heurgué-Hamard, Valérie; Graille, Marc

    2011-01-01

    Methylation is a common modification encountered in DNA, RNA and proteins. It plays a central role in gene expression, protein function and mRNA translation. Prokaryotic and eukaryotic class I translation termination factors are methylated on the glutamine of the essential and universally conserved GGQ motif, in line with an important cellular role. In eukaryotes, this modification is performed by the Mtq2-Trm112 holoenzyme. Trm112 activates not only the Mtq2 catalytic subunit but also two other tRNA methyltransferases (Trm9 and Trm11). To understand the molecular mechanisms underlying methyltransferase activation by Trm112, we have determined the 3D structure of the Mtq2-Trm112 complex and mapped its active site. Using site-directed mutagenesis and in vivo functional experiments, we show that this structure can also serve as a model for the Trm9-Trm112 complex, supporting our hypothesis that Trm112 uses a common strategy to activate these three methyltransferases. PMID:21478168

  8. Mapping the miRNA interactome by crosslinking ligation and sequencing of hybrids (CLASH)

    PubMed Central

    Helwak, Aleksandra; Tollervey, David

    2014-01-01

    RNA-RNA interactions play critical roles in many cellular processes but studying them is difficult and laborious. Here, we describe an experimental procedure, termed crosslinking ligation and sequencing of hybrids (CLASH), which allows high-throughput identification of sites of RNA-RNA interaction. During CLASH, a tagged bait protein is UV crosslinked in vivo to stabilise RNA interactions and purified under denaturing conditions. RNAs associated with the bait protein are partially truncated, and the ends of RNA-duplexes are ligated together. Following linker addition, cDNA library preparation and high-throughput sequencing, the ligated duplexes give rise to chimeric cDNAs, which unambiguously identify RNA-RNA interaction sites independent of bioinformatic predictions. This protocol is optimized for studying miRNA targets bound by Argonaute proteins, but should be easily adapted for other RNA-binding proteins and classes of RNA. The protocol requires around 5 days to complete, excluding the time required for high-throughput sequencing and bioinformatic analyses. PMID:24577361

  9. Evaluation of automated global mapping of Reference Soil Groups of WRB2015

    NASA Astrophysics Data System (ADS)

    Mantel, Stephan; Caspari, Thomas; Kempen, Bas; Schad, Peter; Eberhardt, Einar; Ruiperez Gonzalez, Maria

    2017-04-01

    SoilGrids is an automated system that provides global predictions for standard numeric soil properties at seven standard depths down to 200 cm, currently at spatial resolutions of 1km and 250m. In addition, the system provides predictions of depth to bedrock and distribution of soil classes based on WRB and USDA Soil Taxonomy (ST). In SoilGrids250m(1), soil classes (WRB, version 2006) consist of the RSG and the first prefix qualifier, whereas in SoilGrids1km(2), the soil class was assessed at RSG level. Automated mapping of World Reference Base (WRB) Reference Soil Groups (RSGs) at a global level has great advantages. Maps can be updated in a short time span with relatively little effort when new data become available. To translate soil names of older versions of FAO/WRB and national classification systems of the source data into names according to WRB 2006, correlation tables are used in SoilGrids. Soil properties and classes are predicted independently from each other. This means that the combinations of soil properties for the same cells or soil property-soil class combinations do not necessarily yield logical combinations when the map layers are studied jointly. The model prediction procedure is robust and probably has a low source of error in the prediction of RSGs. It seems that the quality of the original soil classification in the data and the use of correlation tables are the largest sources of error in mapping the RSG distribution patterns. Predicted patterns of dominant RSGs were evaluated in selected areas and sources of error were identified. Suggestions are made for improvement of WRB2015 RSG distribution predictions in SoilGrids. Keywords: Automated global mapping; World Reference Base for Soil Resources; Data evaluation; Data quality assurance References 1 Hengl T, de Jesus JM, Heuvelink GBM, Ruiperez Gonzalez M, Kilibarda M, et al. (2016) SoilGrids250m: global gridded soil information based on Machine Learning. Earth System Science Data (ESSD), in review. 2 Hengl T, de Jesus JM, MacMillan RA, Batjes NH, Heuvelink GBM, et al. (2014) SoilGrids1km — Global Soil Information Based on Automated Mapping. PLoS ONE 9(8): e105992. doi:10.1371/journal.pone.0105992

  10. A Mid-Latitude Geomorphologic Map of Titan

    NASA Astrophysics Data System (ADS)

    Lopes, Rosaly M. C.; Malaska, Michael; Schoenfeld, Ashley; Solomonidou, Anezina; Birch, Samuel; Hayes, Alexander; Williams, David A.; Janssen, Michael A.; Le Gall, Alice; Turtle, Elizabeth P.; Radebaugh, Jani; Cassini RADAR Team

    2016-10-01

    We investigated the geologic history of Titan through mapping and analyzing the distribution of observed geomorphic features using a combination of Cassini data collected by RADAR, VIMS, and ISS. Determining the spatial and superposition relationships between geomorphologic units on Titan leads to an understanding of the likely time evolution of the landscape and gives insight into the process interactions that drive its evolution. We have used all available datasets to extend the mapping initially done by Lopes et al. [1]. We now have the mid-latitudes (60N to 60S) of Titan mapped at 1:800,000 scale in all areas covered by Synthetic Aperture Radar (SAR). A map of the polar regions has been done by Birch et al. [2]. For the mid-latitudes, we have defined five broad classes of terrains following Malaska et al. [3], largely based on prior mapping [1]. These broad classes are: craters, hummocky/mountainous, labyrinth, plains, and dunes. We have found that the hummocky/mountainous terrains are the oldest units on the surface and appear radiometrically cold, indicating icy materials [5]. Dunes are the youngest units and appear radiometrically warm, indicating organic sediments. VIMS analysis shows that compositional variations can also exist within the same class of unit [6, 7]. Future work aims to combine the polar maps of Birch et al. [2] with the mid-latitude maps presented here and harmonize the units at the 60 degrees boundaries. We also plan to extend the map in regions not covered by SAR to produce a 1:1,500,000 scale map compatible with USGS standards.References: [1] Lopes, R.M.C., et al.: Icarus, 205, 540-588, 2010; [2] Birch et al., submitted to Icarus. [3] Malaska, M., et al.: Icarus, 270, 130-161, 2016; [4] Barnes, J., et al.: Pl. Scie., 2:1, 2013; [5] Janssen et al., 2016 Icarus 270, 443-459, 2016. [6] Solomonidou, A., et al. : DPS abstract, 2016. [7] Lopes, R.M.C., et al, Icarus, 270, 162-182, 2016.

  11. CLIP-seq analysis of multi-mapped reads discovers novel functional RNA regulatory sites in the human transcriptome.

    PubMed

    Zhang, Zijun; Xing, Yi

    2017-09-19

    Crosslinking or RNA immunoprecipitation followed by sequencing (CLIP-seq or RIP-seq) allows transcriptome-wide discovery of RNA regulatory sites. As CLIP-seq/RIP-seq reads are short, existing computational tools focus on uniquely mapped reads, while reads mapped to multiple loci are discarded. We present CLAM (CLIP-seq Analysis of Multi-mapped reads). CLAM uses an expectation-maximization algorithm to assign multi-mapped reads and calls peaks combining uniquely and multi-mapped reads. To demonstrate the utility of CLAM, we applied it to a wide range of public CLIP-seq/RIP-seq datasets involving numerous splicing factors, microRNAs and m6A RNA methylation. CLAM recovered a large number of novel RNA regulatory sites inaccessible by uniquely mapped reads. The functional significance of these sites was demonstrated by consensus motif patterns and association with alternative splicing (splicing factors), transcript abundance (AGO2) and mRNA half-life (m6A). CLAM provides a useful tool to discover novel protein-RNA interactions and RNA modification sites from CLIP-seq and RIP-seq data, and reveals the significant contribution of repetitive elements to the RNA regulatory landscape of the human transcriptome. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

  12. Analysis of land suitability for urban development in Ahwaz County in southwestern Iran using fuzzy logic and analytic network process (ANP).

    PubMed

    Malmir, Maryam; Zarkesh, Mir Masoud Kheirkhah; Monavari, Seyed Masoud; Jozi, Seyed Ali; Sharifi, Esmail

    2016-08-01

    The ever-increasing development of cities due to population growth and migration has led to unplanned constructions and great changes in urban spatial structure, especially the physical development of cities in unsuitable places, which requires conscious guidance and fundamental organization. It is therefore necessary to identify suitable sites for future development of cities and prevent urban sprawl as one of the main concerns of urban managers and planners. In this study, to determine the suitable sites for urban development in the county of Ahwaz, the effective biophysical and socioeconomic criteria (including 27 sub-criteria) were initially determined based on literature review and interviews with certified experts. In the next step, a database of criteria and sub-criteria was prepared. Standardization of values and unification of scales in map layers were done using fuzzy logic. The criteria and sub-criteria were weighted by analytic network process (ANP) in the Super Decision software. Next, the map layers were overlaid using weighted linear combination (WLC) in the GIS software. According to the research findings, the final land suitability map was prepared with five suitability classes of very high (5.86 %), high (31.93 %), medium (38.61 %), low (17.65 %), and very low (5.95 %). Also, in terms of spatial distribution, suitable lands for urban development are mainly located in the central and southern parts of the Ahwaz County. It is expected that integration of fuzzy logic and ANP model will provide a better decision support tool compared with other models. The developed model can also be used in the land suitability analysis of other cities.

  13. Automated classifications of topography from DEMs by an unsupervised nested-means algorithm and a three-part geometric signature

    NASA Astrophysics Data System (ADS)

    Iwahashi, Junko; Pike, Richard J.

    2007-05-01

    An iterative procedure that implements the classification of continuous topography as a problem in digital image-processing automatically divides an area into categories of surface form; three taxonomic criteria-slope gradient, local convexity, and surface texture-are calculated from a square-grid digital elevation model (DEM). The sequence of programmed operations combines twofold-partitioned maps of the three variables converted to greyscale images, using the mean of each variable as the dividing threshold. To subdivide increasingly subtle topography, grid cells sloping at less than mean gradient of the input DEM are classified by designating mean values of successively lower-sloping subsets of the study area (nested means) as taxonomic thresholds, thereby increasing the number of output categories from the minimum 8 to 12 or 16. Program output is exemplified by 16 topographic types for the world at 1-km spatial resolution (SRTM30 data), the Japanese Islands at 270 m, and part of Hokkaido at 55 m. Because the procedure is unsupervised and reflects frequency distributions of the input variables rather than pre-set criteria, the resulting classes are undefined and must be calibrated empirically by subsequent analysis. Maps of the example classifications reflect physiographic regions, geological structure, and landform as well as slope materials and processes; fine-textured terrain categories tend to correlate with erosional topography or older surfaces, coarse-textured classes with areas of little dissection. In Japan the resulting classes approximate landform types mapped from airphoto analysis, while in the Americas they create map patterns resembling Hammond's terrain types or surface-form classes; SRTM30 output for the United States compares favorably with Fenneman's physical divisions. Experiments are suggested for further developing the method; the Arc/Info AML and the map of terrain classes for the world are available as online downloads.

  14. Automated classifications of topography from DEMs by an unsupervised nested-means algorithm and a three-part geometric signature

    USGS Publications Warehouse

    Iwahashi, J.; Pike, R.J.

    2007-01-01

    An iterative procedure that implements the classification of continuous topography as a problem in digital image-processing automatically divides an area into categories of surface form; three taxonomic criteria-slope gradient, local convexity, and surface texture-are calculated from a square-grid digital elevation model (DEM). The sequence of programmed operations combines twofold-partitioned maps of the three variables converted to greyscale images, using the mean of each variable as the dividing threshold. To subdivide increasingly subtle topography, grid cells sloping at less than mean gradient of the input DEM are classified by designating mean values of successively lower-sloping subsets of the study area (nested means) as taxonomic thresholds, thereby increasing the number of output categories from the minimum 8 to 12 or 16. Program output is exemplified by 16 topographic types for the world at 1-km spatial resolution (SRTM30 data), the Japanese Islands at 270??m, and part of Hokkaido at 55??m. Because the procedure is unsupervised and reflects frequency distributions of the input variables rather than pre-set criteria, the resulting classes are undefined and must be calibrated empirically by subsequent analysis. Maps of the example classifications reflect physiographic regions, geological structure, and landform as well as slope materials and processes; fine-textured terrain categories tend to correlate with erosional topography or older surfaces, coarse-textured classes with areas of little dissection. In Japan the resulting classes approximate landform types mapped from airphoto analysis, while in the Americas they create map patterns resembling Hammond's terrain types or surface-form classes; SRTM30 output for the United States compares favorably with Fenneman's physical divisions. Experiments are suggested for further developing the method; the Arc/Info AML and the map of terrain classes for the world are available as online downloads. ?? 2006 Elsevier B.V. All rights reserved.

  15. DOE Office of Scientific and Technical Information (OSTI.GOV)

    Lewis, M.S.

    The Barnwell Waste Management Facility (BWMF) is scheduled to restrict access to waste generators outside of the Atlantic Compact (SC, CT, NJ) on July 1, 2008. South Carolina, authorized under the Low-Level Waste Policy Act of 1980 and Amendments Act of 1985, and in agreement with the other Atlantic Compact states, will only accept Class A, B, and C low-level radioactive waste (LLRW) generated within compact. For many years, the BWMF has been the only LLRW disposal facility to accept Class B and C waste from LLRW generators throughout the country, except those that have access to the Northwest Compactmore » Site. Many Class B/C waste generators consider this to be a national crisis situation requiring interim or possible permanent storage, changes in operation, significant cost impacts, and/or elimination of services, especially in the health care and non-power generation industries. With proper in-house waste management practices and utilization of commercial processor services, a national crisis can be avoided, although some generators with specific waste forms or radionuclides will remain without options. In summary: It is unknown what the future will bring for commercial LLRW disposal. Could the anticipated post Barnwell Class B/C crisis be avoided by any of the following? - Barnwell Site remains open for the nation's commercial Class B/C waste; - Richland Site opens back up to the nation for commercial Class B/C waste; - Texas Site opens up to the nation for commercial Class B/C waste; - Federal Government intervenes by keeping a commercial Class B/C site open for the nation's commercial Class B/C waste; - Federal Government makes a DOE site available for commercial Class B/C waste; - Federal Government revisits the LLRW Policy Act of 1980 and Amendments Act of 1985. Without a future LLRW site capable of accepting Class B/C currently on the horizon, commercial LLRW generators are faced with waste volume elimination, reduction, or storage. With proper in-house waste management practices, utilization of commercial processor services and regulatory relief, a national crisis can be avoided. Waste volumes for storage can be reduced to as little as 10% of the current Class B/C volume. Although a national LLRW crisis can be avoided, some generators with specific waste forms or radionuclides will have a significant financial and/or operational impact due to a lack of commercial LLRW management options. (authors)« less

  16. Minimal invasive epicardial lead implantation: optimizing cardiac resynchronization with a new mapping device for epicardial lead placement.

    PubMed

    Maessen, J G; Phelps, B; Dekker, A L A J; Dijkman, B

    2004-05-01

    To optimize resynchronization in biventricular pacing with epicardial leads, mapping to determine the best pacing site, is a prerequisite. A port access surgical mapping technique was developed that allowed multiple pace site selection and reproducible lead evaluation and implantation. Pressure-volume loops analysis was used for real time guidance in targeting epicardial lead placement. Even the smallest changes in lead position revealed significantly different functional results. Optimizing the pacing site with this technique allowed functional improvement up to 40% versus random pace site selection.

  17. Trail Orienteering: An Effective Way To Practice Map Interpretation.

    ERIC Educational Resources Information Center

    Horizons, 1999

    1999-01-01

    Discusses a type of orienteering developed in Great Britain to allow people with physical disabilities to compete on equal terms. Sites are viewed from a wheelchair-accessible main route. The main skill is interpreting the maps at each site, not finding the sites. Describes differences from standard orienteering, how sites work, and essential…

  18. Shallow lithological structure across the Dead Sea Transform derived from geophysical experiments

    USGS Publications Warehouse

    Stankiewicz, J.; Munoz, G.; Ritter, O.; Bedrosian, P.A.; Ryberg, T.; Weckmann, U.; Weber, M.

    2011-01-01

    In the framework of the DEad SEa Rift Transect (DESERT) project a 150 km magnetotelluric profile consisting of 154 sites was carried out across the Dead Sea Transform. The resistivity model presented shows conductive structures in the western section of the study area terminating abruptly at the Arava Fault. For a more detailed analysis we performed a joint interpretation of the resistivity model with a P wave velocity model from a partially coincident seismic experiment. The technique used is a statistical correlation of resistivity and velocity values in parameter space. Regions of high probability of a coexisting pair of values for the two parameters are mapped back into the spatial domain, illustrating the geographical location of lithological classes. In this study, four regions of enhanced probability have been identified, and are remapped as four lithological classes. This technique confirms the Arava Fault marks the boundary of a highly conductive lithological class down to a depth of ???3 km. That the fault acts as an impermeable barrier to fluid flow is unusual for large fault zone, which often exhibit a fault zone characterized by high conductivity and low seismic velocity. At greater depths it is possible to resolve the Precambrian basement into two classes characterized by vastly different resistivity values but similar seismic velocities. The boundary between these classes is approximately coincident with the Al Quweira Fault, with higher resistivities observed east of the fault. This is interpreted as evidence for the original deformation along the DST originally taking place at the Al Quweira Fault, before being shifted to the Arava Fault. 

  19. Automated thematic mapping and change detection of ERTS-A images. [farmlands, cities, and mountain identification in Utah, Washington, Arizona, and California

    NASA Technical Reports Server (NTRS)

    Gramenopoulos, N. (Principal Investigator)

    1974-01-01

    The author has identified the following significant results. A diffraction pattern analysis of MSS images led to the development of spatial signatures for farm land, urban areas and mountains. Four spatial features are employed to describe the spatial characteristics of image cells in the digital data. Three spectral features are combined with the spatial features to form a seven dimensional vector describing each cell. Then, the classification of the feature vectors is accomplished by using the maximum likelihood criterion. It was determined that the recognition accuracy with the maximum likelihood criterion depends on the statistics of the feature vectors. It was also determined that for a given geographic area the statistics of the classes remain invariable for a period of a month, but vary substantially between seasons. Three ERTS-1 images from the Phoenix, Arizona area were processed, and recognition rates between 85% and 100% were obtained for the terrain classes of desert, farms, mountains, and urban areas. To eliminate the need for training data, a new clustering algorithm has been developed. Seven ERTS-1 images from four test sites have been processed through the clustering algorithm, and high recognition rates have been achieved for all terrain classes.

  20. Shore zone land use and land cover: Central Atlantic Regional Ecological Test Site

    USGS Publications Warehouse

    Dolan, R.; Hayden, B.P.; Vincent, C.L.

    1974-01-01

    Anderson's 1972 United States Geological Survey classification in modified form was applied to the barrier-island coastline within the CARETS region. High-altitude, color-infrared photography of December, 1972, and January, 1973, served as the primary data base in this study. The CARETS shore zone studied was divided into six distinct geographical regions; area percentages for each class in the modified Anderson classification are presented. Similarities and differences between regions are discussed within the framework of man's modification of these landscapes. The results of this study are presented as a series of 19 maps of land-use categories. Recommendations are made for a remote-sensing system for monitoring the CARETS shore zone within the context of the dynamics of the landscapes studied.

  1. Integration of Satellite Tracking Data and Satellite Images for Detailed Characteristics of Wildlife Habitats

    NASA Astrophysics Data System (ADS)

    Dobrynin, D. V.; Rozhnov, V. V.; Saveliev, A. A.; Sukhova, O. V.; Yachmennikova, A. A.

    2017-12-01

    Methods of analysis of the results got from satellite tracking of large terrestrial mammals differ in the level of their integration with additional geographic data. The reliable fine-scale cartographic basis for assessing specific wildlife habitats can be developed through the interpretation of multispectral remote sensing data and extrapolation of the results to the entire estimated species range. Topographic maps were ordinated according to classified features using self-organizing maps (Kohonen's SOM). The satellite image of the Ussuriiskyi Nature Reserve area was interpreted for the analysis of movement conditions for seven wild Amur tigers ( Panthera tigris altaica) equipped with GPS collars. 225 SOM classes for cartographic visualization are sufficient for the detailed mapping of all natural complexes that were identified as a result of interpretation. During snow-free periods, tigers preferred deciduous and shrub associations at lower elevations, as well as mixed forests in the valleys of streams that are adjacent to sparse forests and shrub watershed in the mountain ranges; during heavy snow periods, the animals preferred the entire range of plant communities in different relief types, except for open sites in meadows and abandoned fields at foothills. The border zones of different biotopes were typically used by the tigers during all seasons. Amur tigers preferred coniferous forests for long-term movements.

  2. Spatial Prediction of Soil Classes by Using Soil Weathering Parameters Derived from vis-NIR Spectroscopy

    NASA Astrophysics Data System (ADS)

    Ramirez-Lopez, Leonardo; Alexandre Dematte, Jose

    2010-05-01

    There is consensus in the scientific community about the great need of spatial soil information. Conventional mapping methods are time consuming and involve high costs. Digital soil mapping has emerged as an area in which the soil mapping is optimized by the application of mathematical and statistical approaches, as well as the application of expert knowledge in pedology. In this sense, the objective of the study was to develop a methodology for the spatial prediction of soil classes by using soil spectroscopy methodologies related with fieldwork, spectral data from satellite image and terrain attributes in simultaneous. The studied area is located in São Paulo State, and comprised an area of 473 ha, which was covered by a regular grid (100 x 100 m). In each grid node was collected soil samples at two depths (layers A and B). There were extracted 206 samples from transect sections and submitted to soil analysis (clay, Al2O3, Fe2O3, SiO2 TiO2, and weathering index). The first analog soil class map (ASC-N) contains only soil information regarding from orders to subgroups of the USDA Soil Taxonomy System. The second (ASC-H) map contains some additional information related to some soil attributes like color, ferric levels and base sum. For the elaboration of the digital soil maps the data was divided into three groups: i) Predicted soil attributes of the layer B (related to the soil weathering) which were obtained by using a local soil spectral library; ii) Spectral bands data extracted from a Landsat image; and iii) Terrain parameters. This information was summarized by a principal component analysis (PCA) in each group. Digital soil maps were generated by supervised classification using a maximum likelihood method. The trainee information for this classification was extracted from five toposequences based on the analog soil class maps. The spectral models of weathering soil attributes shown a high predictive performance with low error (R2 0.71 to 0.90). The spatial prediction of these attributes also showed a high performance (validations with R2> 0.78). These models allowed to increase spatial resolution of soil weathering information. On the other hand, the comparison between the analog and digital soil maps showed a global accuracy of 69% for the ASC-N map and 62% in the ASC-H map, with kappa indices of 0.52 and 0.45 respectively.

  3. Developing Remote Sensing Methodology to Characterize Savanna Vegetation Structure and Composition for Rangeland Monitoring and Conservation Applications

    NASA Astrophysics Data System (ADS)

    Tsalyuk, M.; Kelly, M.; Getz, W.

    2012-12-01

    Rangeland ecosystems cover more than fifty percent of earth's land surface, host considerable biodiversity and provide vital ecosystem services. However, rangelands around the world face degradation due to climate change, land use change and overgrazing. Human-driven changes to fire and grazing regimes enhance degradation processes. The purpose of this research is to develop a remote sensing methodology to characterize the structure and composition of savanna vegetation, in order to improve the ability of conservation managers to monitor and address such degradation processes. Our study site, Etosha National Park, is a 22,270 km^2 semi-arid savanna located in north-central Namibia. Fencing and provision of artificial water sources for wildlife have changed the natural grazing patterns, which has caused bush encroachment and vegetation degradation across the park. We used MODIS and Landsat ETM+ 7 satellite imagery to map the vegetation type, dominant species, density, cover and biomass of herbaceous and woody vegetation in Etosha. We used imagery for 2007-2012 together with extensive field sampling, both in the wet and the dry seasons. At each sampling point, we identified the dominant species and measured the density, canopy size, height and diameter of the trees and shrubs. At only 31% of the sampling points, the identified vegetation type matched the class assigned at the 1996 classification. This may indicate significant habitat modifications in Etosha. We used two parallel analytical approaches to correlate between radiometric and field data. First, we show that traditional supervised classification identifies well five classes: bare soil, grassland, steppe, shrub savanna and tree savanna. We then refined this classification to enable us to identify the species composition in an area utilizing the phenological differences in timing and duration of greenness of the dominant tree and shrub species in Etosha. Specifically, using multi-date images we were able to identify additional six sub-classes based on the dominant species in each class: Colophospermum mopane woodland, Colophospermum mopane shrubland, Cataphractes alexandri woodland, Acacia nebrownii shrubland, mixed Combretum species woodland and Terminalia prunioides woodland. Second, we used quantitative methods to relate satellite-based vegetation indices to the biometric properties measured on the ground. We found a correlation among measured height, diameter and canopy cover of woody vegetation and used this to improve the correlation between cover and Normalized Difference Vegetation Index (NDVI). We showed that the Soil Adjusted Total Vegetation Index (SATVI) and Normalized Difference Water Index (NDWI) were related to both greenness and density at a site. In order to measure grass biomass in the field, we calibrated Disc Pasture Mater by clipping, weighing and drying grass in 1m^2 plots, in the dry and wet seasons, with resulting R^2 of 0.87 and 0.83, respectively. MODIS-derived leaf area index (LAI) data was best correlated with dry grass biomass. We used these correlations to produce detailed maps of each vegetation parameter for the whole park. These maps will provide a baseline to employ historical imagery to better understand the effects of the park's management and changing grazing pressure on vegetation structure.

  4. Combining pixel and object based image analysis of ultra-high resolution multibeam bathymetry and backscatter for habitat mapping in shallow marine waters

    NASA Astrophysics Data System (ADS)

    Ierodiaconou, Daniel; Schimel, Alexandre C. G.; Kennedy, David; Monk, Jacquomo; Gaylard, Grace; Young, Mary; Diesing, Markus; Rattray, Alex

    2018-06-01

    Habitat mapping data are increasingly being recognised for their importance in underpinning marine spatial planning. The ability to collect ultra-high resolution (cm) multibeam echosounder (MBES) data in shallow waters has facilitated understanding of the fine-scale distribution of benthic habitats in these areas that are often prone to human disturbance. Developing quantitative and objective approaches to integrate MBES data with ground observations for predictive modelling is essential for ensuring repeatability and providing confidence measures for habitat mapping products. Whilst supervised classification approaches are becoming more common, users are often faced with a decision whether to implement a pixel based (PB) or an object based (OB) image analysis approach, with often limited understanding of the potential influence of that decision on final map products and relative importance of data inputs to patterns observed. In this study, we apply an ensemble learning approach capable of integrating PB and OB Image Analysis from ultra-high resolution MBES bathymetry and backscatter data for mapping benthic habitats in Refuge Cove, a temperate coastal embayment in south-east Australia. We demonstrate the relative importance of PB and OB seafloor derivatives for the five broad benthic habitats that dominate the site. We found that OB and PB approaches performed well with differences in classification accuracy but not discernible statistically. However, a model incorporating elements of both approaches proved to be significantly more accurate than OB or PB methods alone and demonstrate the benefits of using MBES bathymetry and backscatter combined for class discrimination.

  5. Significance of microhabitat heterogeneity in the spatial pattern and size-class structure of Anastatica hierochuntica L.

    NASA Astrophysics Data System (ADS)

    Hegazy, Ahmad K.; Kabiel, Hanan F.

    2007-05-01

    Anastatica hierochuntica L. (Brassicaceae) is a desert monocarpic annual species characterized by a topochory/ombrohydrochory type of seed dispersal. The hygrochastic nature of the dry skeletons (dead individuals) permits controlling seed dispersal by rain events. The amount of dispersed seeds is proportional to the intensity of rainfall. When light showers occur, seeds are released and remain in the site. Seeds dispersed in the vicinity of the mother or source plant (primary type of seed dispersal) resulted in clumped pattern and complicated interrelationships among size-classes of the population. Following heavy rainfall, most seeds are released and transported into small patches and shallow depressions which collect runoff water. The dead A. hierochuntica skeletons demonstrate site-dependent size-class structure, spatial pattern and spatial interrelationships in different microhabitats. Four microhabitat types have been sampled: runnels, patches and simple and compound depressions in two sites (gravel and sand). Ripley's K-function was used to analyze the spatial pattern in populations of A. hierochuntica skeletons in the study microhabitats. Clumped patterns were observed in nearly all of the study microhabitats. Populations of A. hierochuntica in the sand site were more productive than in the gravel site and usually had more individuals in the larger size-classes. In the compound-depression microhabitat, the degree of clumping decreased from the core zone to the intermediate zone then shifted into overdispersed pattern in the outer zone. At the within size-class level, the clumped pattern dominated in small size classes but shifted into random and overdispersed patterns in the larger size classes. Aggregation between small and large size-classes was not well-defined but large individuals were found closer to the smaller individuals than to those of their own class. In relation to the phytomass and the size-class structure, the outer zone of the simple depression and the outer and intermediate zones of the compound depression microhabitats were the most productive sites.

  6. General Classification Handbook for Floodplain Vegetation in Large River Systems. Chapter 1 of Book 2, Collection of Environmental Data

    DTIC Science & Technology

    2004-01-01

    chlorophyll content, and the more vigorous the growth , the greater the reflectance. This helps the photointerpreter to better distinguish between plant and...land cover map and the field determinations for each class. Based on the error matrix, the accuracy rate for classifying each map class can be...duck- weed (Lemna, Spirodela, and Wolffia) and other nonrooted- floating aquatics. Because duckweed is free-floating, it can relocate day-to-day

  7. QuickMap: a public tool for large-scale gene therapy vector insertion site mapping and analysis.

    PubMed

    Appelt, J-U; Giordano, F A; Ecker, M; Roeder, I; Grund, N; Hotz-Wagenblatt, A; Opelz, G; Zeller, W J; Allgayer, H; Fruehauf, S; Laufs, S

    2009-07-01

    Several events of insertional mutagenesis in pre-clinical and clinical gene therapy studies have created intense interest in assessing the genomic insertion profiles of gene therapy vectors. For the construction of such profiles, vector-flanking sequences detected by inverse PCR, linear amplification-mediated-PCR or ligation-mediated-PCR need to be mapped to the host cell's genome and compared to a reference set. Although remarkable progress has been achieved in mapping gene therapy vector insertion sites, public reference sets are lacking, as are the possibilities to quickly detect non-random patterns in experimental data. We developed a tool termed QuickMap, which uniformly maps and analyzes human and murine vector-flanking sequences within seconds (available at www.gtsg.org). Besides information about hits in chromosomes and fragile sites, QuickMap automatically determines insertion frequencies in +/- 250 kb adjacency to genes, cancer genes, pseudogenes, transcription factor and (post-transcriptional) miRNA binding sites, CpG islands and repetitive elements (short interspersed nuclear elements (SINE), long interspersed nuclear elements (LINE), Type II elements and LTR elements). Additionally, all experimental frequencies are compared with the data obtained from a reference set, containing 1 000 000 random integrations ('random set'). Thus, for the first time a tool allowing high-throughput profiling of gene therapy vector insertion sites is available. It provides a basis for large-scale insertion site analyses, which is now urgently needed to discover novel gene therapy vectors with 'safe' insertion profiles.

  8. A mutational analysis of U12-dependent splice site dinucleotides

    PubMed Central

    DIETRICH, ROSEMARY C.; FULLER, JOHN D.; PADGETT, RICHARD A.

    2005-01-01

    Introns spliced by the U12-dependent minor spliceosome are divided into two classes based on their splice site dinucleotides. The /AU-AC/ class accounts for about one-third of U12-dependent introns in humans, while the /GU-AG/ class accounts for the other two-thirds. We have investigated the in vivo and in vitro splicing phenotypes of mutations in these dinucleotide sequences. A 5′ A residue can splice to any 3′ residue, although C is preferred. A 5′ G residue can splice to 3′ G or U residues with a preference for G. Little or no splicing was observed to 3′ A or C residues. A 5′ U or C residue is highly deleterious for U12-dependent splicing, although some combinations, notably 5′ U to 3′ U produced detectable spliced products. The dependence of 3′ splice site activity on the identity of the 5′ residue provides evidence for communication between the first and last nucleotides of the intron. Most mutants in the second position of the 5′ splice site and the next to last position of the 3′ splice site were defective for splicing. Double mutants of these residues showed no evidence of communication between these nucleotides. Varying the distance between the branch site and the 3′ splice site dinucleotide in the /GU-AG/ class showed that a somewhat larger range of distances was functional than for the /AU-AC/ class. The optimum branch site to 3′ splice site distance of 11–12 nucleotides appears to be the same for both classes. PMID:16043500

  9. A pragmatic comparison of two diabetes education programs in improving type 2 diabetes mellitus outcomes.

    PubMed

    Dorland, Katherine; Liddy, Clare

    2014-03-28

    Although it is clear that education programs constitute key elements of improved diabetes management, uncertainty exists regarding the optimal method of delivering that education. In addition to the lack of consensus regarding the most appropriate delivery methods for these programs, there is a paucity of research which evaluates these methods in terms of specific clinical outcomes. This pragmatic study compares the effectiveness of two distinct diabetes education programs in improving clinical outcomes in patients with type 2 diabetes mellitus in a primary care setting. The two diabetes education classes (n = 80 enrolled) retrospectively evaluated were 'the ABC's of Diabetes' (one 2-hour didactic teaching session) and 'Conversation Maps' (3 highly interactive weekly classes, 6 hours in total). Eligible participants (n = 32) had their charts reviewed and outcome measures (i.e., glycosylated hemoglobin levels (HbA1c), low density lipoprotein (LDL), systolic blood pressure (SBP), diastolic blood pressure (DBP), and weight) recorded 1 year prior to and 6 months following the class. Pre- and post-class outcome measures were compared. A trend towards lower HbA1c was observed after completion of both classes, with an average reduction of 0.2%, and 0.6% after 6 months in the 'ABC's of Diabetes' class and 'Conversation Maps' class respectively. A significant decrease in weight was observed 6 months after the 'ABC's of Diabetes' class (p = 0.028), and in LDL after the 'Conversation Maps' class (p = 0.049). Patients with HbA1c ≥ 8% showed a drop of 1.1% in HbA1c 3 months after either class (p = 0.004). No significant difference in outcomes was found between the two diabetes education classes assessed. There was a trend towards improved glycemic control after both classes, and patients with high HbA1c levels demonstrated statistically significant improvements. This indicates that shorter sessions using didactic teaching methods may be equally effective in producing improvements in diabetes self-management as more intensive course formats.

  10. Factors driving spatial and temporal variation in production and production/biomass ratio of stream-resident brown trout (Salmo trutta) in Cantabrian streams

    USGS Publications Warehouse

    Lobon-Cervia, J.; Gonzalez, G.; Budy, P.

    2011-01-01

    1.The objective was to identify the factors driving spatial and temporal variation in annual production (PA) and turnover (production/biomass) ratio (P/BA) of resident brown trout Salmo trutta in tributaries of the Rio Esva (Cantabrian Mountains, Asturias, north-western Spain). We examined annual production (total production of all age-classes over a year) (PA) and turnover (P/BA) ratios, in relation to year-class production (production over the entire life time of a year-class) (PT) and turnover (P/BT) ratio, over 14years at a total of 12 sites along the length of four contrasting tributaries. In addition, we explored whether the importance of recruitment and site depth for spatial and temporal variations in year-class production (PT), elucidated in previous studies, extends to annual production. 2.Large spatial (among sites) and temporal (among years) variation in annual production (range 1.9-40.3gm-2 per year) and P/BA ratio (range 0.76-2.4per year) typified these populations, values reported here including all the variation reported globally for salmonids streams inhabited by one or several species. 3.Despite substantial differences among streams and sites in all production attributes, when all data were pooled, annual (PA) and year-class production (PT) and annual (P/BA) and year-class P/BT ratios were tightly linked. Annual (PA) and year-class production (PT) were similar but not identical, i.e. PT=0.94 PA, whereas the P/BT ratios were 4+P/BA ratios. 4.Recruitment (Rc) and mean annual density (NA) were major density-dependent drivers of production and their relationships were described by simple mathematical models. While year-class production (PT) was determined (R2=70.1%) by recruitment (Rc), annual production (PA) was determined (R2=60.3%) by mean annual density (NA). In turn, variation in recruitment explained R2=55.2% of variation in year-class P/BT ratios, the latter attaining an asymptote at P/BT=6 at progressively higher levels of recruitment. Similarly, variations in mean annual density (NA) explained R2=52.1% of variation in annual P/BA, the latter reaching an asymptote at P/BA=2.1. This explained why P/BT is equal to P/BA plus the number of year-classes at high but not at low densities. 5.Site depth was a major determinant of spatial (among sites) variation in production attributes. All these attributes described two-phase trajectories with site depth, reaching a maximum at sites of intermediate depth and declining at shallower and deeper sites. As a consequence, at sites where recruitment and mean annual density reached minimum or maximum values, annual (PA) and year-class production (PT) and annual (P/BA) and year-class P/BT ratios also reached minimum and maximum values. ?? 2011 Blackwell Publishing Ltd.

  11. Site Map | USDA Plant Hardiness Zone Map

    Science.gov Websites

    Acknowledgments & Citation Copyright Map & Data Downloads Map Downloads Geography (GIS) Downloads Multi ; Citation Copyright Map & Data Downloads Map Downloads Geography (GIS) Downloads Multi-ZIP Code Finder

  12. Mapping urban land cover from space: Some observations for future progress

    NASA Technical Reports Server (NTRS)

    Gaydos, L.

    1982-01-01

    The multilevel classification system adopted by the USGS for operational mapping of land use and land cover at levels 1 and 2 is discussed and the successes and failures of mapping land cover from LANDSAT digital data are reviewed. Techniques used for image interpretation and their relationships to sensor parameters are examined. The requirements for mapping levels 2 and 3 classes are considered.

  13. Developing Land Use Land Cover Maps for the Lower Mekong Basin to Aid SWAT Hydrologic Modeling

    NASA Astrophysics Data System (ADS)

    Spruce, J.; Bolten, J. D.; Srinivasan, R.

    2017-12-01

    This presentation discusses research to develop Land Use Land Cover (LULC) maps for the Lower Mekong Basin (LMB). Funded by a NASA ROSES Disasters grant, the main objective was to produce updated LULC maps to aid the Mekong River Commission's (MRC's) Soil and Water Assessment Tool (SWAT) hydrologic model. In producing needed LULC maps, temporally processed MODIS monthly NDVI data for 2010 were used as the primary data source for classifying regionally prominent forest and agricultural types. The MODIS NDVI data was derived from processing MOD09 and MYD09 8-day reflectance data with the Time Series Product Tool, a custom software package. Circa 2010 Landsat multispectral data from the dry season were processed into top of atmosphere reflectance mosaics and then classified to derive certain locally common LULC types, such as urban areas and industrial forest plantations. Unsupervised ISODATA clustering was used to derive most LULC classifications. GIS techniques were used to merge MODIS and Landsat classifications into final LULC maps for Sub-Basins (SBs) 1-8 of the LMB. The final LULC maps were produced at 250-meter resolution and delivered to the MRC for use in SWAT modeling for the LMB. A map accuracy assessment was performed for the SB 7 LULC map with 14 classes. This assessment was performed by comparing random locations for sampled LULC types to geospatial reference data such as Landsat RGBs, MODIS NDVI phenologic profiles, high resolution satellite data from Google Map/Earth, and other reference data from the MRC (e.g., crop calendars). LULC accuracy assessment results for SB 7 indicated an overall agreement to reference data of 81% at full scheme specificity. However, by grouping 3 deciduous forest classes into 1 class, the overall agreement improved to 87%. The project enabled updated LULC maps, plus more specific rice types were classified compared to the previous LULC maps. The LULC maps from this project should improve the use of SWAT for modeling hydrology in the LMB, plus improve water and disaster management in a region vulnerable to flooding, droughts, and anthropogenic change (e.g., from dam building and other LULC change).

  14. 77 FR 74266 - Review of National Environmental Policy Act Categorical Exclusion Survey Posted on DOT/FHWA Web Site

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-12-13

    ... of National Environmental Policy Act Categorical Exclusion Survey Posted on DOT/FHWA Web Site AGENCY... review is now available on the FHWA Web site, http://www.fhwa.dot.gov/map21 , and FTA Web site, http://www.fta.dot.gov/map21 . DATES: These reports were posted on the Web site on December 7, 2012...

  15. Hyperspectral analysis of the ultramafic complex and adjacent lithologies at Mordor, NT, Australia

    USGS Publications Warehouse

    Rowan, L.C.; Simpson, C.J.; Mars, J.C.

    2004-01-01

    The Mordor Complex consists of a series of potassic ultramafic rocks which were intruded into Proterozoic felsic gneisses and amphibolite and are overlain by quartzite and unconsolidated deposits. In situ and laboratory 0.4 to 2.5 ??m reflectance spectra show Al-OH absorption features caused by absorption in muscovite, kaolinite, and illite/smectite in syenite, granitic gneiss, quartzite and unconsolidated sedimentary deposits, and Fe,Mg-OH features due to phlogopite, biotite, epidote, and hornblende in the mafic and ultramafic rocks. Ferrous-iron absorption positioned near 1.05 ??m is most intense in peridotite reflectance spectra. Ferric-iron absorption is intense in most of the felsic lithologies. HyMap data were recorded in 126 narrow bands from 0.43 to 2.5 ??m along a 7-km-wide swath with approximately 6-m spatial resolution. Correction of the data to spectral reflectance was accomplished by reference to in situ measurements of an extensive, alluvial plain. Spectral classes for matched filter processing were selected by using the pixel purity index procedure and analysis of in situ and laboratory spectra. Considering the spatial distribution of the resulting 14 classes, some classes were combined, which produced eight classes characterized by Al-OH absorption features, and three Fe,Mg-OH absorption-feature classes. Comparison of the distribution of these 11 spectral classes to a generalized lithologic map of the study area shows that the spectral distinction among the eight Al-OH classes is related to variations in primary lithology, weathering products, and vegetation density. Quartzite is represented in three classes, syenite corresponds to a single scattered class, quartz-muscovite-biotite schist defines a single very coherent class, and unconsolidated sediments are portrayed in four classes. The three mafic-ultramafic classes are distinguished on the basis of generally intense Fe,Mg-OH and ferrous-iron absorption features. A single class represents the main Mordor ultramafic mass. Epidote-bearing rocks define another class, which corresponds to biotite gneiss and, in the southern part of the area, to fracture zones. The third class, which exhibits Al-OH, as well as Fe,Mg-OH features, represents hornblende gneiss and other mafic gneisses. These results indicate the importance of analyzing the VNIR and SWIR spectral shape and albedo, as well as analyzing specific spectral features, for mapping lithologic units in this weathered terrain. ?? 2004 Elsevier Inc. All rights reserved.

  16. EEG microstates during resting represent personality differences.

    PubMed

    Schlegel, Felix; Lehmann, Dietrich; Faber, Pascal L; Milz, Patricia; Gianotti, Lorena R R

    2012-01-01

    We investigated the spontaneous brain electric activity of 13 skeptics and 16 believers in paranormal phenomena; they were university students assessed with a self-report scale about paranormal beliefs. 33-channel EEG recordings during no-task resting were processed as sequences of momentary potential distribution maps. Based on the maps at peak times of Global Field Power, the sequences were parsed into segments of quasi-stable potential distribution, the 'microstates'. The microstates were clustered into four classes of map topographies (A-D). Analysis of the microstate parameters time coverage, occurrence frequency and duration as well as the temporal sequence (syntax) of the microstate classes revealed significant differences: Believers had a higher coverage and occurrence of class B, tended to decreased coverage and occurrence of class C, and showed a predominant sequence of microstate concatenations from A to C to B to A that was reversed in skeptics (A to B to C to A). Microstates of different topographies, putative "atoms of thought", are hypothesized to represent different types of information processing.The study demonstrates that personality differences can be detected in resting EEG microstate parameters and microstate syntax. Microstate analysis yielded no conclusive evidence for the hypothesized relation between paranormal belief and schizophrenia.

  17. Mapping coastal vegetation, land use and environmental impact from ERTS-1. [Delaware coastal zone

    NASA Technical Reports Server (NTRS)

    Klemas, V. (Principal Investigator)

    1973-01-01

    The author has identified the following significant results. Digital analysis of ERTS-1 imagery was used in an attempt to map and inventory the significant ecological communities of Delaware's coastal zone. Eight vegetation and land use discrimination classes were selected: (1) Phragmites communis (giant reed grass); (2) Spartina alterniflora (salt marsh cord grass); (3) Spartina patens (salt marsh hay); (4) shallow water and exposed mud; (5) deep water (greater than 2 m); (6) forest; (7) agriculture; and (8) exposed sand and concrete. Canonical analysis showed the following classification accuracies: Spartina alterniflora, exposed sand, concrete, and forested land - 94% to 100%; shallow water - mud and deep water - 88% and 93% respectively; Phragmites communis 83%; Spartina patens - 52%. Classification accuracy for agriculture was very poor (51%). Limitations of time and available class-memory space resulted in limiting the analysis of agriculture to very gross identification of a class which actually consists of many varied signature classes. Abundant ground truth was available in the form of vegetation maps compiled from color and color infrared photographs. It is believed that with further refinement of training set selection, sufficiently accurate results can be obtained for all categories.

  18. [Medical and ecological assessment of climate effects on urolithiasis morbidity in population of Primorsky territory].

    PubMed

    Koval'chuk, V K

    2004-01-01

    The article presents medicoecological estimation of quantitative relations between monsoon climate and urolithiasis primary morbidity in the Primorsky Territory. Quantitative estimation of the climate was performed by V. I. Rusanov (1973) who calculated daily meteorological data for 1 p.m. throughout 1991-1999. Primary urolithiasis morbidity for this period of time was provided by regional health department. The data were processed by methods of medical mapping and paired correlation analysis. In the Territory, mapping revealed the same location of the zones with high frequency of discomfortable weather of class V and VI causing chilblain in positive air temperatures and zones with elevated primary urolithiasis morbidity in children and adults. Correlation analysis confirmed mapping results and determined significant negative correlations between frequency of relatively comfortable moment weather classes II-IV and morbidity of children and adults, positive correlation between frequency of discomfortable class VI and adult morbidity. Thus, high frequency of days per year with discomfortable classes of moment weather in low positive air temperatures may be one of the factors of urolithiasis risk in population of the Primorsky Territory. Climatic factors should be taken into consideration in planning primary prophylaxis of this disease in the Primorsky Territory.

  19. Analysis of QoS Requirements for e-Health Services and Mapping to Evolved Packet System QoS Classes

    PubMed Central

    Skorin-Kapov, Lea; Matijasevic, Maja

    2010-01-01

    E-Health services comprise a broad range of healthcare services delivered by using information and communication technology. In order to support existing as well as emerging e-Health services over converged next generation network (NGN) architectures, there is a need for network QoS control mechanisms that meet the often stringent requirements of such services. In this paper, we evaluate the QoS support for e-Health services in the context of the Evolved Packet System (EPS), specified by the Third Generation Partnership Project (3GPP) as a multi-access all-IP NGN. We classify heterogeneous e-Health services based on context and network QoS requirements and propose a mapping to existing 3GPP QoS Class Identifiers (QCIs) that serve as a basis for the class-based QoS concept of the EPS. The proposed mapping aims to provide network operators with guidelines for meeting heterogeneous e-Health service requirements. As an example, we present the QoS requirements for a prototype e-Health service supporting tele-consultation between a patient and a doctor and illustrate the use of the proposed mapping to QCIs in standardized QoS control procedures. PMID:20976301

  20. Landsat-faciliated vegetation classification of the Kenai National Wildlife Refuge and adjacent areas, Alaska

    USGS Publications Warehouse

    Talbot, S. S.; Shasby, M.B.; Bailey, T.N.

    1985-01-01

    A Landsat-based vegetation map was prepared for Kenai National Wildlife Refuge and adjacent lands, 2 million and 2.5 million acres respectively. The refuge lies within the middle boreal sub zone of south central Alaska. Seven major classes and sixteen subclasses were recognized: forest (closed needleleaf, needleleaf woodland, mixed); deciduous scrub (lowland and montane, subalpine); dwarf scrub (dwarf shrub tundra, lichen tundra, dwarf shrub and lichen tundra, dwarf shrub peatland, string bog/wetlands); herbaceous (graminoid meadows and marshes); scarcely vegetated areas ; water (clear, moderately turbid, highly turbid); and glaciers. The methodology employed a cluster-block technique. Sample areas were described based on a combination of helicopter-ground survey, aerial photo interpretation, and digital Landsat data. Major steps in the Landsat analysis involved: preprocessing (geometric connection), spectral class labeling of sample areas, derivation of statistical parameters for spectral classes, preliminary classification of the entree study area using a maximum-likelihood algorithm, and final classification through ancillary information such as digital elevation data. The vegetation map (scale 1:250,000) was a pioneering effort since there were no intermediate-sclae maps of the area. Representative of distinctive regional patterns, the map was suitable for use in comprehensive conservation planning and wildlife management.

  1. WebMapping at school

    NASA Astrophysics Data System (ADS)

    de Lange, Norbert

    2010-11-01

    The paper discusses the position of GIS in Geography as a subject especially at German schools. It points out that students only need simple GIS-functions in order to explore digital atlases or webbased data viewers. Furthermore it is widely accepted that learning achievements improve if students make use of the idea of self-employed and explorative working on information produced by themselves. These two arguments have led to the development of the WebMapping tool "kartografix_school". It allows users to generate maps with new and individually defined content on the internet. For that purpose the tool contains generalized outlines of all countries of the world as well as of German States. As these boundaries are given users can assign new attribute data to these geoobjects. These data are transferred to a graphic presentation. It is possible to define the classification and colours for each class. Users can change and update all information (data as well as number of classes, definition of classes, colours) at any time. Moreover "kartografix_school" offers the possibility to produce maps which are composed of two layers. All data are stored at a server located in the University of Osnabrück. "kartografix_school" is integrated in an e-Learning environment.

  2. Cruise report: RV Ocean Alert Cruise A2-98-SC: mapping the southern California continental margin; March 26 through April 11, 1998; San Diego to Long Beach, California

    USGS Publications Warehouse

    Gardner, James V.; Mayer, Larry A.

    1998-01-01

    The major objective of cruise A2-98 was to map portions of the southern California continental margin, including mapping in detail US Environmental Protection Agency (USEPA) ocean dumping sites. Mapping was accomplished using a high-resolution multibeam mapping system. The cruise was a jointly funded project between the USEPA and the US Geological Survey (USGS). The USEPA is specifically interested in a series of ocean dump sites off San Diego, Newport Beach, and Long Beach (see Fig. 1 in report) that require high-resolution base maps for site monitoring purposes. The USGS Coastal and Marine Geology Program has several on-going projects off southern California that lack high-precision base maps for a variety of ongoing geological studies. The cruise was conducted under a Cooperative Agreement between the USGS and the Ocean Mapping Group, University of New Brunswick, Canada.

  3. Area change reporting using the desktop FIADB

    Treesearch

    Patrick D. Miles; Mark H. Hansen

    2012-01-01

    The estimation of area change between two FIA inventories is complicated by the "mapping" of subplots. Subplots can be subdivided or mapped into forest and nonforest conditions, and forest conditions can be further mapped based on distinct changes in reserved status, owner group, forest type, stand-size class, regeneration status, and stand density. The...

  4. Using Concept Maps to Teach a Nanotechnology Survey Short Course

    ERIC Educational Resources Information Center

    Moyses, David D.; Rivet, Jennifer L.; Fahlman, Bradley D.

    2010-01-01

    We describe the use of concept maps within a 4-week nanotechnology survey course, designed for first-year undergraduate students. Because of the extremely short time frame of the class, students would be inundated with an overwhelming number of new concepts and definitions. Hence, we employed concept mapping to increase student retention and…

  5. Evolution families of conformal mappings with fixed points and the Löwner-Kufarev equation

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Goryainov, V V

    2015-01-31

    The paper is concerned with evolution families of conformal mappings of the unit disc to itself that fix an interior point and a boundary point. Conditions are obtained for the evolution families to be differentiable, and an existence and uniqueness theorem for an evolution equation is proved. A convergence theorem is established which describes the topology of locally uniform convergence of evolution families in terms of infinitesimal generating functions. The main result in this paper is the embedding theorem which shows that any conformal mapping of the unit disc to itself with two fixed points can be embedded into a differentiable evolution familymore » of such mappings. This result extends the range of the parametric method in the theory of univalent functions. In this way the problem of the mutual change of the derivative at an interior point and the angular derivative at a fixed point on the boundary is solved for a class of mappings of the unit disc to itself. In particular, the rotation theorem is established for this class of mappings. Bibliography: 27 titles.« less

  6. An integrated remote sensing approach for identifying ecological range sites. [parker mountain

    NASA Technical Reports Server (NTRS)

    Jaynes, R. A.

    1983-01-01

    A model approach for identifying ecological range sites was applied to high elevation sagebrush-dominated rangelands on Parker Mountain, in south-central Utah. The approach utilizes map information derived from both high altitude color infrared photography and LANDSAT digital data, integrated with soils, geological, and precipitation maps. Identification of the ecological range site for a given area requires an evaluation of all relevant environmental factors which combine to give that site the potential to produce characteristic types and amounts of vegetation. A table is presented which allows the user to determine ecological range site based upon an integrated use of the maps which were prepared. The advantages of identifying ecological range sites through an integrated photo interpretation/LANDSAT analysis are discussed.

  7. Thematic accuracy of the National Land Cover Database (NLCD) 2001 land cover for Alaska

    USGS Publications Warehouse

    Selkowitz, D.J.; Stehman, S.V.

    2011-01-01

    The National Land Cover Database (NLCD) 2001 Alaska land cover classification is the first 30-m resolution land cover product available covering the entire state of Alaska. The accuracy assessment of the NLCD 2001 Alaska land cover classification employed a geographically stratified three-stage sampling design to select the reference sample of pixels. Reference land cover class labels were determined via fixed wing aircraft, as the high resolution imagery used for determining the reference land cover classification in the conterminous U.S. was not available for most of Alaska. Overall thematic accuracy for the Alaska NLCD was 76.2% (s.e. 2.8%) at Level II (12 classes evaluated) and 83.9% (s.e. 2.1%) at Level I (6 classes evaluated) when agreement was defined as a match between the map class and either the primary or alternate reference class label. When agreement was defined as a match between the map class and primary reference label only, overall accuracy was 59.4% at Level II and 69.3% at Level I. The majority of classification errors occurred at Level I of the classification hierarchy (i.e., misclassifications were generally to a different Level I class, not to a Level II class within the same Level I class). Classification accuracy was higher for more abundant land cover classes and for pixels located in the interior of homogeneous land cover patches. ?? 2011.

  8. An Anomalous Noise Events Detector for Dynamic Road Traffic Noise Mapping in Real-Life Urban and Suburban Environments

    PubMed Central

    2017-01-01

    One of the main aspects affecting the quality of life of people living in urban and suburban areas is their continued exposure to high Road Traffic Noise (RTN) levels. Until now, noise measurements in cities have been performed by professionals, recording data in certain locations to build a noise map afterwards. However, the deployment of Wireless Acoustic Sensor Networks (WASN) has enabled automatic noise mapping in smart cities. In order to obtain a reliable picture of the RTN levels affecting citizens, Anomalous Noise Events (ANE) unrelated to road traffic should be removed from the noise map computation. To this aim, this paper introduces an Anomalous Noise Event Detector (ANED) designed to differentiate between RTN and ANE in real time within a predefined interval running on the distributed low-cost acoustic sensors of a WASN. The proposed ANED follows a two-class audio event detection and classification approach, instead of multi-class or one-class classification schemes, taking advantage of the collection of representative acoustic data in real-life environments. The experiments conducted within the DYNAMAP project, implemented on ARM-based acoustic sensors, show the feasibility of the proposal both in terms of computational cost and classification performance using standard Mel cepstral coefficients and Gaussian Mixture Models (GMM). The two-class GMM core classifier relatively improves the baseline universal GMM one-class classifier F1 measure by 18.7% and 31.8% for suburban and urban environments, respectively, within the 1-s integration interval. Nevertheless, according to the results, the classification performance of the current ANED implementation still has room for improvement. PMID:29023397

  9. ZN graded discrete Lax pairs and Yang-Baxter maps

    NASA Astrophysics Data System (ADS)

    Fordy, Allan P.; Xenitidis, Pavlos

    2017-05-01

    We recently introduced a class of ZN graded discrete Lax pairs and studied the associated discrete integrable systems (lattice equations). In this paper, we introduce the corresponding Yang-Baxter maps. Many well-known examples belong to this scheme for N=2, so, for N≥3, our systems may be regarded as generalizations of these. In particular, for each N we introduce a class of multi-component Yang-Baxter maps, which include HBIII (of Papageorgiou et al. 2010 SIGMA 6, 003 (9 p). (doi:10.3842/SIGMA.2010.033)), when N=2, and that associated with the discrete modified Boussinesq equation, for N=3. For N≥5 we introduce a new family of Yang-Baxter maps, which have no lower dimensional analogue. We also present new multi-component versions of the Yang-Baxter maps FIV and FV (given in the classification of Adler et al. 2004 Commun. Anal. Geom. 12, 967-1007. (doi:10.4310/CAG.2004.v12.n5.a1)).

  10. [Formula: see text] graded discrete Lax pairs and Yang-Baxter maps.

    PubMed

    Fordy, Allan P; Xenitidis, Pavlos

    2017-05-01

    We recently introduced a class of [Formula: see text] graded discrete Lax pairs and studied the associated discrete integrable systems (lattice equations). In this paper, we introduce the corresponding Yang-Baxter maps. Many well-known examples belong to this scheme for N =2, so, for N ≥3, our systems may be regarded as generalizations of these. In particular, for each N we introduce a class of multi-component Yang-Baxter maps, which include H B III (of Papageorgiou et al. 2010 SIGMA 6, 003 (9 p). (doi:10.3842/SIGMA.2010.033)), when N =2, and that associated with the discrete modified Boussinesq equation, for N =3. For N ≥5 we introduce a new family of Yang-Baxter maps, which have no lower dimensional analogue. We also present new multi-component versions of the Yang-Baxter maps F IV and F V (given in the classification of Adler et al. 2004 Commun. Anal. Geom. 12, 967-1007. (doi:10.4310/CAG.2004.v12.n5.a1)).

  11. ZN graded discrete Lax pairs and Yang–Baxter maps

    PubMed Central

    Fordy, Allan P.

    2017-01-01

    We recently introduced a class of ZN graded discrete Lax pairs and studied the associated discrete integrable systems (lattice equations). In this paper, we introduce the corresponding Yang–Baxter maps. Many well-known examples belong to this scheme for N=2, so, for N≥3, our systems may be regarded as generalizations of these. In particular, for each N we introduce a class of multi-component Yang–Baxter maps, which include HBIII (of Papageorgiou et al. 2010 SIGMA 6, 003 (9 p). (doi:10.3842/SIGMA.2010.033)), when N=2, and that associated with the discrete modified Boussinesq equation, for N=3. For N≥5 we introduce a new family of Yang–Baxter maps, which have no lower dimensional analogue. We also present new multi-component versions of the Yang–Baxter maps FIV and FV (given in the classification of Adler et al. 2004 Commun. Anal. Geom. 12, 967–1007. (doi:10.4310/CAG.2004.v12.n5.a1)). PMID:28588406

  12. Cosmology with CLASS

    NASA Astrophysics Data System (ADS)

    Watts, Duncan; CLASS Collaboration

    2018-01-01

    The Cosmology Large Angular Scale Surveyor (CLASS) will use large-scale measurements of the polarized cosmic microwave background (CMB) to constrain the physics of inflation, reionization, and massive neutrinos. The experiment is designed to characterize the largest scales, which are inaccessible to most ground-based experiments, and remove Galactic foregrounds from the CMB maps. In this dissertation talk, I present simulations of CLASS data and demonstrate their ability to constrain the simplest single-field models of inflation and to reduce the uncertainty of the optical depth to reionization, τ, to near the cosmic variance limit, significantly improving on current constraints. These constraints will bring a qualitative shift in our understanding of standard ΛCDM cosmology. In particular, CLASS's measurement of τ breaks cosmological parameter degeneracies. Probes of large scale structure (LSS) test the effect of neutrino free-streaming at small scales, which depends on the mass of the neutrinos. CLASS's τ measurement, when combined with next-generation LSS and BAO measurements, will enable a 4σ detection of neutrino mass, compared with 2σ without CLASS data.. I will also briefly discuss the CLASS experiment's measurements of circular polarization of the CMB and the implications of the first-such near-all-sky map.

  13. Lesson Plans: Road Maps for the Active Learning Classroom.

    PubMed

    Moore-Cox, Annie

    2017-11-01

    Lesson planning is a documentation process used extensively in education from kindergarten through 12th grade, but rarely in higher education, including undergraduate, prelicensure nursing education. Lesson plans help teachers plan what will happen during a class period from moment to moment. Trends in nursing education, such as the incorporation of active learning strategies in the classroom, make lesson plans a timely addition to the nurse educator's toolkit. This article describes the components of a lesson plan and offers an author-developed template for use in nursing education. Using the template helps nurse educators map out activities for all class participants, such as students, student pairs and teams, and faculty. The lesson plan enables faculty to plot out the many dynamic components of an active learning class period. It also serves as a road map for subsequent faculty, which is an important feature as the profession faces a wave of retirements in the coming decade. [J Nurs Educ. 2017;56(11):697-700.]. Copyright 2017, SLACK Incorporated.

  14. Automated method to differentiate between native and mirror protein models obtained from contact maps.

    PubMed

    Kurczynska, Monika; Kotulska, Malgorzata

    2018-01-01

    Mirror protein structures are often considered as artifacts in modeling protein structures. However, they may soon become a new branch of biochemistry. Moreover, methods of protein structure reconstruction, based on their residue-residue contact maps, need methodology to differentiate between models of native and mirror orientation, especially regarding the reconstructed backbones. We analyzed 130 500 structural protein models obtained from contact maps of 1 305 SCOP domains belonging to all 7 structural classes. On average, the same numbers of native and mirror models were obtained among 100 models generated for each domain. Since their structural features are often not sufficient for differentiating between the two types of model orientations, we proposed to apply various energy terms (ETs) from PyRosetta to separate native and mirror models. To automate the procedure for differentiating these models, the k-means clustering algorithm was applied. Using total energy did not allow to obtain appropriate clusters-the accuracy of the clustering for class A (all helices) was no more than 0.52. Therefore, we tested a series of different k-means clusterings based on various combinations of ETs. Finally, applying two most differentiating ETs for each class allowed to obtain satisfying results. To unify the method for differentiating between native and mirror models, independent of their structural class, the two best ETs for each class were considered. Finally, the k-means clustering algorithm used three common ETs: probability of amino acid assuming certain values of dihedral angles Φ and Ψ, Ramachandran preferences and Coulomb interactions. The accuracies of clustering with these ETs were in the range between 0.68 and 0.76, with sensitivity and selectivity in the range between 0.68 and 0.87, depending on the structural class. The method can be applied to all fully-automated tools for protein structure reconstruction based on contact maps, especially those analyzing big sets of models.

  15. Automated method to differentiate between native and mirror protein models obtained from contact maps

    PubMed Central

    Kurczynska, Monika

    2018-01-01

    Mirror protein structures are often considered as artifacts in modeling protein structures. However, they may soon become a new branch of biochemistry. Moreover, methods of protein structure reconstruction, based on their residue-residue contact maps, need methodology to differentiate between models of native and mirror orientation, especially regarding the reconstructed backbones. We analyzed 130 500 structural protein models obtained from contact maps of 1 305 SCOP domains belonging to all 7 structural classes. On average, the same numbers of native and mirror models were obtained among 100 models generated for each domain. Since their structural features are often not sufficient for differentiating between the two types of model orientations, we proposed to apply various energy terms (ETs) from PyRosetta to separate native and mirror models. To automate the procedure for differentiating these models, the k-means clustering algorithm was applied. Using total energy did not allow to obtain appropriate clusters–the accuracy of the clustering for class A (all helices) was no more than 0.52. Therefore, we tested a series of different k-means clusterings based on various combinations of ETs. Finally, applying two most differentiating ETs for each class allowed to obtain satisfying results. To unify the method for differentiating between native and mirror models, independent of their structural class, the two best ETs for each class were considered. Finally, the k-means clustering algorithm used three common ETs: probability of amino acid assuming certain values of dihedral angles Φ and Ψ, Ramachandran preferences and Coulomb interactions. The accuracies of clustering with these ETs were in the range between 0.68 and 0.76, with sensitivity and selectivity in the range between 0.68 and 0.87, depending on the structural class. The method can be applied to all fully-automated tools for protein structure reconstruction based on contact maps, especially those analyzing big sets of models. PMID:29787567

  16. Remote sensing data applied to the evaluation of soil erosion caused by land-use. Ribeirao Anhumas Basin Area: A case study. [Brazil

    NASA Technical Reports Server (NTRS)

    Dejesusparada, N. (Principal Investigator); Dosanjosferreirapinto, S.; Kux, H. J. H.

    1980-01-01

    Formerly covered by a tropical forest, the study area was deforested in the early 40's for coffee plantation and cattle raising, which caused intense gully erosion problems. To develop a method to analyze the relationship between land use and soil erosion, visual interpretations of aerial photographs (scale 1:25.000), MSS-LANDSAT imagery (scale 1:250,000), as well as automatic interpretation of computer compatible tapes by IMAGE-100 system were carried out. From visual interpretation the following data were obtained: land use and cover tapes, slope classes, ravine frequency, and a texture sketch map. During field work, soil samples were collected for texture and X-ray analysis. The texture sketch map indicate that the areas with higher slope angles have a higher susceptibilty to the development of gullies. Also, the over carriage of pastureland, together with very friable lithologies (mainly sandstone) occuring in that area, seem to be the main factors influencing the catastrophic extension of ravines in the study site.

  17. Applying GIS to develop a model for forest fire risk: A case study in Espírito Santo, Brazil.

    PubMed

    Eugenio, Fernando Coelho; dos Santos, Alexandre Rosa; Fiedler, Nilton Cesar; Ribeiro, Guido Assunção; da Silva, Aderbal Gomes; dos Santos, Áureo Banhos; Paneto, Greiciane Gaburro; Schettino, Vitor Roberto

    2016-05-15

    A forest fire risk map is a basic element for planning and protecting forested areas. The main goal of this study was to develop a statistical model for preparing a forest fire risk map using GIS. Such model is based on assigning weights to nine variables divided into two classes: physical factors of the site (terrain slope, land-use/occupation, proximity to roads, terrain orientation, and altitude) and climatic factors (precipitation, temperature, water deficit, and evapotranspiration). In regions where the climate is different from the conditions of this study, the model will require an adjustment of the variables weights according to the local climate. The study area, Espírito Santo State, exhibited approximately 3.81% low risk, 21.18% moderate risk, 30.10% high risk, 41.50% very high risk, and 3.40% extreme risk of forest fire. The areas classified as high risk, very high and extreme, contemplated a total of 78.92% of heat spots. Copyright © 2016 Elsevier Ltd. All rights reserved.

  18. A multidisciplinary study of earth resources imagery of Australia, Antarctica and Papua, New Guinea

    NASA Technical Reports Server (NTRS)

    Fisher, N. H. (Principal Investigator)

    1975-01-01

    The author has identified the following significant results. A thirteen category recognition map was prepared, showing forest, water, grassland, and exposed rock types. Preliminary assessment of classification accuracies showed that water, forest, meadow, and Niobrara shale were the most accurately mapped classes. Unsatisfactory results, were obtained in an attempt to discrimate sparse forest cover over different substrates. As base elevation varied from 7,000 to 13,000 ft, with an atmospheric visibility of 48 km, no changes in water and forest recognition were observed. Granodiorite recognition accuracy decreased monotonically as base elevation increased, even though the training set location was at 10,000 ft elevation. For snow varying in base elevation from 9400 to 8420 ft, recognition decreases from 99% at the 9400 ft training set elevation to 88% at 8420 ft. Calculations of expected radiance at the ERTS sensor from snow reflectance measured at the site and from Turner model calculations of irradiance, transmission and path radiance, reveal that snow signals should not be clipped, assuming that calculations and ERTS calibration constants were correct.

  19. Comparison of Hyperspectral and Multispectral Satellites for Discriminating Land Cover in Northern California

    NASA Astrophysics Data System (ADS)

    Clark, M. L.; Kilham, N. E.

    2015-12-01

    Land-cover maps are important science products needed for natural resource and ecosystem service management, biodiversity conservation planning, and assessing human-induced and natural drivers of land change. Most land-cover maps at regional to global scales are produced with remote sensing techniques applied to multispectral satellite imagery with 30-500 m pixel sizes (e.g., Landsat, MODIS). Hyperspectral, or imaging spectrometer, imagery measuring the visible to shortwave infrared regions (VSWIR) of the spectrum have shown impressive capacity to map plant species and coarser land-cover associations, yet techniques have not been widely tested at regional and greater spatial scales. The Hyperspectral Infrared Imager (HyspIRI) mission is a VSWIR hyperspectral and thermal satellite being considered for development by NASA. The goal of this study was to assess multi-temporal, HyspIRI-like satellite imagery for improved land cover mapping relative to multispectral satellites. We mapped FAO Land Cover Classification System (LCCS) classes over 22,500 km2 in the San Francisco Bay Area, California using 30-m HyspIRI, Landsat 8 and Sentinel-2 imagery simulated from data acquired by NASA's AVIRIS airborne sensor. Random Forests (RF) and Multiple-Endmember Spectral Mixture Analysis (MESMA) classifiers were applied to the simulated images and accuracies were compared to those from real Landsat 8 images. The RF classifier was superior to MESMA, and multi-temporal data yielded higher accuracy than summer-only data. With RF, hyperspectral data had overall accuracy of 72.2% and 85.1% with full 20-class and reduced 12-class schemes, respectively. Multispectral imagery had lower accuracy. For example, simulated and real Landsat data had 7.5% and 4.6% lower accuracy than HyspIRI data with 12 classes, respectively. In summary, our results indicate increased mapping accuracy using HyspIRI multi-temporal imagery, particularly in discriminating different natural vegetation types, such as spectrally-mixed woodlands and forests.

  20. Support Vector Data Description Model to Map Specific Land Cover with Optimal Parameters Determined from a Window-Based Validation Set.

    PubMed

    Zhang, Jinshui; Yuan, Zhoumiqi; Shuai, Guanyuan; Pan, Yaozhong; Zhu, Xiufang

    2017-04-26

    This paper developed an approach, the window-based validation set for support vector data description (WVS-SVDD), to determine optimal parameters for support vector data description (SVDD) model to map specific land cover by integrating training and window-based validation sets. Compared to the conventional approach where the validation set included target and outlier pixels selected visually and randomly, the validation set derived from WVS-SVDD constructed a tightened hypersphere because of the compact constraint by the outlier pixels which were located neighboring to the target class in the spectral feature space. The overall accuracies for wheat and bare land achieved were as high as 89.25% and 83.65%, respectively. However, target class was underestimated because the validation set covers only a small fraction of the heterogeneous spectra of the target class. The different window sizes were then tested to acquire more wheat pixels for validation set. The results showed that classification accuracy increased with the increasing window size and the overall accuracies were higher than 88% at all window size scales. Moreover, WVS-SVDD showed much less sensitivity to the untrained classes than the multi-class support vector machine (SVM) method. Therefore, the developed method showed its merits using the optimal parameters, tradeoff coefficient ( C ) and kernel width ( s ), in mapping homogeneous specific land cover.

  1. Association of West Nile virus illness and urban landscapes in Chicago and Detroit.

    PubMed

    Ruiz, Marilyn O; Walker, Edward D; Foster, Erik S; Haramis, Linn D; Kitron, Uriel D

    2007-03-12

    West Nile virus infection in humans in urban areas of the Midwestern United States has exhibited strong spatial clustering during epidemic years. We derived urban landscape classes from the physical and socio-economic factors hypothesized to be associated with West Nile Virus (WNV) transmission and compared those to human cases of illness in 2002 in Chicago and Detroit. The objectives were to improve understanding of human exposure to virus-infected mosquitoes in the urban context, and to assess the degree to which environmental factors found to be important in Chicago were also found in Detroit. Five urban classes that partitioned the urban space were developed for each city region. The classes had many similarities in the two settings. In both regions, the WNV case rate was considerably higher in the urban class associated with the Inner Suburbs, where 1940-1960 era housing dominates, vegetation cover is moderate, and population density is moderate. The land cover mapping approach played an important role in the successful and consistent classification of the urban areas. The analysis demonstrates how urban form and past land use decisions can influence transmission of a vector-borne virus. In addition, the results are helpful to develop hypotheses regarding urban landscape features and WNV transmission, they provide a structured method to stratify the urban areas to locate representative field study sites specifically for WNV, and this analysis contributes to the question of how the urban environment affects human health.

  2. AAPG-CSD geologic provinces code map

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Meyer, R.F.; Wallace, L.G.; Wagner, F.J. Jr.

    1991-10-01

    This article provides the history of a revised geologic map which was drawn based on both surface geology and petroleum occurrence. The map includes offshore maps for California and the Gulf Coast of Texas and Louisiana. For onshore sites it provides geologic province boundaries which were drawn along county boundaries to approximate their position relative to oil and gas production. The offshore sites are drawn based on the universal transverse Mercator system.

  3. Regional hydrogeological screening characteristics used for siting near-surface waste-disposal facilities in Oklahoma, U.S.A.

    USGS Publications Warehouse

    Johnson, K.S.

    1991-01-01

    The Oklahoma Geological Survey has developed several maps and reports for preliminary screening of the state of Oklahoma to identify areas that are generally acceptable or unacceptable for disposal of a wide variety of waste materials. These maps and reports focus on the geologic and hydrogeologic parameters that must be evaluated in the screening process. One map (and report) shows the outcrop distribution of 35 thick shale or clay units that are generally suitable for use as host rocks for surface disposal of wastes. A second map shows the distribution of unconsolidated alluvial and terrace-deposit aquifers, and a third map shows the distribution and hydrologic character of bedrock aquifers and their recharge areas. These latter two maps show the areas in the state where special attention must be exercised in permitting storage or disposal of waste materials that could degrade the quality of groundwater. State regulatory agencies and industry are using these maps and reports in preliminary screening of the state to identify potential disposal sites. These maps in no way replace the need for site-specific investigations to prove (or disprove) the adequacy of a site to safely contain waste materials. ?? 1991 Springer-Verlag New York Inc.

  4. Detection of changes in semi-natural grasslands by cross correlation analysis with WorldView-2 images and new Landsat 8 data.

    PubMed

    Tarantino, Cristina; Adamo, Maria; Lucas, Richard; Blonda, Palma

    2016-03-15

    Focusing on a Mediterranean Natura 2000 site in Italy, the effectiveness of the cross correlation analysis (CCA) technique for quantifying change in the area of semi-natural grasslands at different spatial resolutions (grain) was evaluated. In a fine scale analysis (2 m), inputs to the CCA were a) a semi-natural grasslands layer extracted from an existing validated land cover/land use (LC/LU) map (1:5000, time T 1 ) and b) a more recent single date very high resolution (VHR) WorldView-2 image (time T 2 ), with T 2  > T 1 . The changes identified through the CCA were compared against those detected by applying a traditional post-classification comparison (PCC) technique to the same reference T 1 map and an updated T 2 map obtained by a knowledge driven classification of four multi-seasonal Worldview-2 input images. Specific changes observed were those associated with agricultural intensification and fires. The study concluded that prior knowledge (spectral class signatures, awareness of local agricultural practices and pressures) was needed for the selection of the most appropriate image (in terms of seasonality) to be acquired at T 2 . CCA was also applied to the comparison of the existing T 1 map with recent high resolution (HR) Landsat 8 OLS images. The areas of change detected at VHR and HR were broadly similar with larger error values in HR change images.

  5. SU-E-J-219: A Dixon Based Pseudo-CT Generation Method for MR-Only Radiotherapy Treatment Planning of the Pelvis and Head and Neck

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Maspero, M.; Meijer, G.J.; Lagendijk, J.J.W.

    2015-06-15

    Purpose: To develop an image processing method for MRI-based generation of electron density maps, known as pseudo-CT (pCT), without usage of model- or atlas-based segmentation, and to evaluate the method in the pelvic and head-neck region against CT. Methods: CT and MRI scans were obtained from the pelvic region of four patients in supine position using a flat table top only for CT. Stratified CT maps were generated by classifying each voxel based on HU ranges into one of four classes: air, adipose tissue, soft tissue or bone.A hierarchical region-selective algorithm, based on automatic thresholding and clustering, was used tomore » classify tissues from MR Dixon reconstructed fat, In-Phase (IP) and Opposed-Phase (OP) images. First, a body mask was obtained by thresholding the IP image. Subsequently, an automatic threshold on the Dixon fat image differentiated soft and adipose tissue. K-means clustering on IP and OP images resulted in a mask that, via a connected neighborhood analysis, allowing the user to select the components corresponding to bone structures.The pCT was estimated through assignment of bulk HU to the tissue classes. Bone-only Digital Reconstructed Radiographs (DRR) were generated as well. The pCT images were rigidly registered to the stratified CT to allow a volumetric and voxelwise comparison. Moreover, pCTs were also calculated within the head-neck region in two volunteers using the same pipeline. Results: The volumetric comparison resulted in differences <1% for each tissue class. A voxelwise comparison showed a good classification, ranging from 64% to 98%. The primary misclassified classes were adipose/soft tissue and bone/soft tissue. As the patients have been imaged on different table tops, part of the misclassification error can be explained by misregistration. Conclusion: The proposed approach does not rely on an anatomy model providing the flexibility to successfully generate the pCT in two different body sites. This research is founded by ZonMw IMDI Programme, project name: “RASOR sharp: MRI based radiotherapy planning using a single MRI sequence”, project number: 10-104003010.« less

  6. A global map of rainfed cropland areas (GMRCA) at the end of last millennium using remote sensing

    USGS Publications Warehouse

    Biradar, C.M.; Thenkabail, P.S.; Noojipady, P.; Li, Y.; Dheeravath, V.; Turral, H.; Velpuri, M.; Gumma, M.K.; Gangalakunta, O.R.P.; Cai, X.L.; Xiao, X.; Schull, M.A.; Alankara, R.D.; Gunasinghe, S.; Mohideen, S.

    2009-01-01

    The overarching goal of this study was to produce a global map of rainfed cropland areas (GMRCA) and calculate country-by-country rainfed area statistics using remote sensing data. A suite of spatial datasets, methods and protocols for mapping GMRCA were described. These consist of: (a) data fusion and composition of multi-resolution time-series mega-file data-cube (MFDC), (b) image segmentation based on precipitation, temperature, and elevation zones, (c) spectral correlation similarity (SCS), (d) protocols for class identification and labeling through uses of SCS R2-values, bi-spectral plots, space-time spiral curves (ST-SCs), rich source of field-plot data, and zoom-in-views of Google Earth (GE), and (e) techniques for resolving mixed classes by decision tree algorithms, and spatial modeling. The outcome was a 9-class GMRCA from which country-by-country rainfed area statistics were computed for the end of the last millennium. The global rainfed cropland area estimate from the GMRCA 9-class map was 1.13 billion hectares (Bha). The total global cropland areas (rainfed plus irrigated) was 1.53 Bha which was close to national statistics compiled by FAOSTAT (1.51 Bha). The accuracies and errors of GMRCA were assessed using field-plot and Google Earth data points. The accuracy varied between 92 and 98% with kappa value of about 0.76, errors of omission of 2-8%, and the errors of commission of 19-36%. ?? 2008 Elsevier B.V.

  7. An industry perspective on commercial radioactive waste disposal conditions and trends.

    PubMed

    Romano, Stephen A

    2006-11-01

    The United States is presently served by Class-A, -B and -C low-level radioactive waste and naturally-occurring and accelerator-produced radioactive material disposal sites in Washington and South Carolina; a Class-A and mixed waste disposal site in Utah that also accepts naturally-occurring radioactive material; and hazardous and solid waste facilities and uranium mill tailings sites that accept certain radioactive materials on a site-specific basis. The Washington site only accepts low-level radioactive waste from 11 western states due to interstate Compact restrictions on waste importation. The South Carolina site will be subject to geographic service area restrictions beginning 1 July 2008, after which only three states will have continued access. The Utah site dominates the commercial Class-A and mixed waste disposal market due to generally lower state fees than apply in South Carolina. To expand existing commercial services, an existing hazardous waste site in western Texas is seeking a Class-A, -B and -C and mixed waste disposal license. With that exception, no new Compact facilities are proposed. This fluid, uncertain situation has inspired national level rulemaking initiatives and policy studies, as well as alternative disposal practices for certain low-activity materials.

  8. KULTURisk regional risk assessment methodology for water-related natural hazards - Part 2: Application to the Zurich case study

    NASA Astrophysics Data System (ADS)

    Ronco, P.; Bullo, M.; Torresan, S.; Critto, A.; Olschewski, R.; Zappa, M.; Marcomini, A.

    2015-03-01

    The aim of this paper is the application of the KULTURisk regional risk assessment (KR-RRA) methodology, presented in the companion paper (Part 1, Ronco et al., 2014), to the Sihl River basin, in northern Switzerland. Flood-related risks have been assessed for different receptors lying on the Sihl River valley including Zurich, which represents a typical case of river flooding in an urban area, by calibrating the methodology to the site-specific context and features. Risk maps and statistics have been developed using a 300-year return period scenario for six relevant targets exposed to flood risk: people; economic activities: buildings, infrastructure and agriculture; natural and semi-natural systems; and cultural heritage. Finally, the total risk index map has been produced to visualize the spatial pattern of flood risk within the target area and, therefore, to identify and rank areas and hotspots at risk by means of multi-criteria decision analysis (MCDA) tools. Through a tailored participatory approach, risk maps supplement the consideration of technical experts with the (essential) point of view of relevant stakeholders for the appraisal of the specific scores weighting for the different receptor-relative risks. The total risk maps obtained for the Sihl River case study are associated with the lower classes of risk. In general, higher (relative) risk scores are spatially concentrated in the deeply urbanized city centre and areas that lie just above to river course. Here, predicted injuries and potential fatalities are mainly due to high population density and to the presence of vulnerable people; flooded buildings are mainly classified as continuous and discontinuous urban fabric; flooded roads, pathways and railways, most of them in regards to the Zurich central station (Hauptbahnhof) are at high risk of inundation, causing severe indirect damage. Moreover, the risk pattern for agriculture, natural and semi-natural systems and cultural heritage is relatively less important mainly because the scattered presence of these assets. Finally, the application of the KR-RRA methodology to the Sihl River case study, as well as to several other sites across Europe (not presented here), has demonstrated its flexibility and the possible adaptation of it to different geographical and socioeconomic contexts, depending on data availability and particulars of the sites, and for other (hazard) scenarios.

  9. Detecting Non-Markovianity of Quantum Evolution via Spectra of Dynamical Maps.

    PubMed

    Chruściński, Dariusz; Macchiavello, Chiara; Maniscalco, Sabrina

    2017-02-24

    We provide an analysis on non-Markovian quantum evolution based on the spectral properties of dynamical maps. We introduce the dynamical analog of entanglement witness to detect non-Markovianity and we illustrate its behavior with several instructive examples. It is shown that for several important classes of dynamical maps the corresponding evolution of singular values and/or eigenvalues of the map provides a simple non-Markovianity witness.

  10. Estimating forest species abundance through linear unmixing of CHRIS/PROBA imagery

    NASA Astrophysics Data System (ADS)

    Stagakis, Stavros; Vanikiotis, Theofilos; Sykioti, Olga

    2016-09-01

    The advancing technology of hyperspectral remote sensing offers the opportunity of accurate land cover characterization of complex natural environments. In this study, a linear spectral unmixing algorithm that incorporates a novel hierarchical Bayesian approach (BI-ICE) was applied on two spatially and temporally adjacent CHRIS/PROBA images over a forest in North Pindos National Park (Epirus, Greece). The scope is to investigate the potential of this algorithm to discriminate two different forest species (i.e. beech - Fagus sylvatica, pine - Pinus nigra) and produce accurate species-specific abundance maps. The unmixing results were evaluated in uniformly distributed plots across the test site using measured fractions of each species derived by very high resolution aerial orthophotos. Landsat-8 images were also used to produce a conventional discrete-type classification map of the test site. This map was used to define the exact borders of the test site and compare the thematic information of the two mapping approaches (discrete vs abundance mapping). The required ground truth information, regarding training and validation of the applied mapping methodologies, was collected during a field campaign across the study site. Abundance estimates reached very good overall accuracy (R2 = 0.98, RMSE = 0.06). The most significant source of error in our results was due to the shadowing effects that were very intense in some areas of the test site due to the low solar elevation during CHRIS acquisitions. It is also demonstrated that the two mapping approaches are in accordance across pure and dense forest areas, but the conventional classification map fails to describe the natural spatial gradients of each species and the actual species mixture across the test site. Overall, the BI-ICE algorithm presented increased potential to unmix challenging objects with high spectral similarity, such as different vegetation species, under real and not optimum acquisition conditions. Its full potential remains to be investigated in further and more complex study sites in view of the upcoming satellite hyperspectral missions.

  11. Seismic microzoning in the metropolitan area of Port - au-Prince - complexity of the subsoil

    NASA Astrophysics Data System (ADS)

    Gilles, R.; Bertil, D.; Belvaux, M.; Roulle, A.; Noury, G.; Prepetit, C.; Jean-Philippe, J.

    2013-12-01

    The magnitude 7.3 earthquake that struck Haiti in January 12, 2010 has caused a lot of damages in surrounding areas epicenter. These damages are due to a lack of knowledge of the Haitian subsoil. To overcome this problem, the LNBTP, the BME and BRGM have agreed to implement a project of seismic microzonation of the metropolitan area of Port-au-Prince which is financed by the Fund for the reconstruction of the country. The seismic microzonation is an important tool for knowledge of seismic risk. It is based on a collection of geological, geotechnical, geophysical and measures and recognition and the campaign of numerous sites. It describes a class of specific soils with associated spectral response. The objective of the microzoning is to identify and map the homogeneous zones of lithology, topography, liquefaction and ground movements. The zoning of lithological sites effect is to identify and map areas with geological and geomechanical consistent and homogeneous seismic response; the objective is to provide, in each area, seismic movements adapted to the ground. This zoning is done in about five steps: 1- Cross-analysis of geological, geotechnical and geophysical information; 2- Such information comprise the existing data collected and the data acquired during the project; 3- Identification of homogeneous areas. 4- Definition of one or more columns of representative soils associated with each zone; 5 - Possible consolidation of area to get the final seismic zoning. 27 zones types were considered for the study of sites effects after the analysis of all geological, geotechnical and geophysical data. For example, for the formation of Delmas, there are 5 areas with soil classes ranging from D to C. Soil columns described in the metropolitan area of Port-au-Prince are processed with the CyberQuake software, which is developed at the BRGM by Modaressi et al. in 1997, to calculate their response to seismic rock solicitation. The seismic motion is determined by 4 accelerograms (2 real and 2 altered real) having a spectral response close to the spectrum of acceleration to the rock. In sum, the seismic microzoning presents a better perspective for the preparation of the plan for the prevention of seismic risk (PPRS) and for the establishment of seismic rules in the metropolitan area of Port-au-Prince.

  12. Urban forest topographical mapping using UAV LIDAR

    NASA Astrophysics Data System (ADS)

    Putut Ash Shidiq, Iqbal; Wibowo, Adi; Kusratmoko, Eko; Indratmoko, Satria; Ardhianto, Ronni; Prasetyo Nugroho, Budi

    2017-12-01

    Topographical data is highly needed by many parties, such as government institution, mining companies and agricultural sectors. It is not just about the precision, the acquisition time and data processing are also carefully considered. In relation with forest management, a high accuracy topographic map is necessary for planning, close monitoring and evaluating forest changes. One of the solution to quickly and precisely mapped topography is using remote sensing system. In this study, we test high-resolution data using Light Detection and Ranging (LiDAR) collected from unmanned aerial vehicles (UAV) to map topography and differentiate vegetation classes based on height in urban forest area of University of Indonesia (UI). The semi-automatic and manual classifications were applied to divide point clouds into two main classes, namely ground and vegetation. There were 15,806,380 point clouds obtained during the post-process, in which 2.39% of it were detected as ground.

  13. Chernobyl fallout in the uppermost (0-3 cm) humus layer of forest soil in Finland, North East Russia and the Baltic countries in 2000--2003.

    PubMed

    Ylipieti, J; Rissanen, K; Kostiainen, E; Salminen, R; Tomilina, O; Täht, K; Gilucis, A; Gregorauskiene, V

    2008-12-15

    The situation resulting from the Chernobyl fallout in 1987 was compared to that in 2000--2001 in Finland and NW Russia and that in 2003 in the Baltic countries. 786 humus (0-3 cm layer) samples were collected during 2000--2001 in the Barents Ecogeochemistry Project, and 177 samples in the Baltic countries in 2003. Nuclides emitting gamma-radiation in the 0-3 cm humus layer were measured by the Radiation and Nuclear Safety Authority-STUK in Finland. In 1987 the project area was classified by the European Commission into four different fallout classes. 137Cs inventory Bg/m2 levels measured in 2000--2003 were compared to the EU's class ranges. Fitting over the whole project area was implemented by generalizing the results for samples from the Baltic countries, for which Bq/m2 inventories could be calculated. A rough estimation was made by comparing the mass of organic matter and humus with 137Cs concentrations in these two areas. Changes in 137Cs concentration levels are illustrated in both thematic maps and tables. Radionuclide 137Cs concentrations (Bq/kg d.w.) were detected in the humus layer at all the 988 sampling sites. 134Cs was still present in 198 sites 15 years after the nuclear accident in Chernobyl. No other anthropogenic nuclides emitting gamma-radiation were detected, but low levels of 60Co, 125Sb and 154Eu isotopes were found in 14 sites. Fifteen years after the Chernobyl accident, the radioactive nuclide 137Cs was and still is the most significant fallout radionuclide in the environment and in food chains. The results show that the fallout can still be detected in the uppermost humus layer in North East Europe.

  14. O-GlcNAc transferase regulates transcriptional activity of human Oct4.

    PubMed

    Constable, Sandii; Lim, Jae-Min; Vaidyanathan, Krithika; Wells, Lance

    2017-10-01

    O-linked β-N-acetylglucosamine (O-GlcNAc) is a single sugar modification found on many different classes of nuclear and cytoplasmic proteins. Addition of this modification, by the enzyme O-linked N-acetylglucosamine transferase (OGT), is dynamic and inducible. One major class of proteins modified by O-GlcNAc is transcription factors. O-GlcNAc regulates transcription factor properties through a variety of different mechanisms including localization, stability and transcriptional activation. Maintenance of embryonic stem (ES) cell pluripotency requires tight regulation of several key transcription factors, many of which are modified by O-GlcNAc. Octamer-binding protein 4 (Oct4) is one of the key transcription factors required for pluripotency of ES cells and more recently, the generation of induced pluripotent stem (iPS) cells. The action of Oct4 is modulated by the addition of several post-translational modifications, including O-GlcNAc. Previous studies in mice found a single site of O-GlcNAc addition responsible for transcriptional regulation. This study was designed to determine if this mechanism is conserved in humans. We mapped 10 novel sites of O-GlcNAc attachment on human Oct4, and confirmed a role for OGT in transcriptional activation of Oct4 at a site distinct from that found in mouse that allows distinction between different Oct4 target promoters. Additionally, we uncovered a potential new role for OGT that does not include its catalytic function. These results confirm that human Oct4 activity is being regulated by OGT by a mechanism that is distinct from mouse Oct4. © The Author 2017. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  15. Site classification for National Strong Motion Observation Network System (NSMONS) stations in China using an empirical H/V spectral ratio method

    NASA Astrophysics Data System (ADS)

    Ji, Kun; Ren, Yefei; Wen, Ruizhi

    2017-10-01

    Reliable site classification of the stations of the China National Strong Motion Observation Network System (NSMONS) has not yet been assigned because of lacking borehole data. This study used an empirical horizontal-to-vertical (H/V) spectral ratio (hereafter, HVSR) site classification method to overcome this problem. First, according to their borehole data, stations selected from KiK-net in Japan were individually assigned a site class (CL-I, CL-II, or CL-III), which is defined in the Chinese seismic code. Then, the mean HVSR curve for each site class was computed using strong motion recordings captured during the period 1996-2012. These curves were compared with those proposed by Zhao et al. (2006a) for four types of site classes (SC-I, SC-II, SC-III, and SC-IV) defined in the Japanese seismic code (JRA, 1980). It was found that an approximate range of the predominant period Tg could be identified by the predominant peak of the HVSR curve for the CL-I and SC-I sites, CL-II and SC-II sites, and CL-III and SC-III + SC-IV sites. Second, an empirical site classification method was proposed based on comprehensive consideration of peak period, amplitude, and shape of the HVSR curve. The selected stations from KiK-net were classified using the proposed method. The results showed that the success rates of the proposed method in identifying CL-I, CL-II, and CL-III sites were 63%, 64%, and 58% respectively. Finally, the HVSRs of 178 NSMONS stations were computed based on recordings from 2007 to 2015 and the sites classified using the proposed method. The mean HVSR curves were re-calculated for three site classes and compared with those from KiK-net data. It was found that both the peak period and the amplitude were similar for the mean HVSR curves derived from NSMONS classification results and KiK-net borehole data, implying the effectiveness of the proposed method in identifying different site classes. The classification results have good agreement with site classes based on borehole data of 81 stations in China, which indicates that our site classification results are acceptable and that the proposed method is practicable.

  16. The 2018 and 2020 Updates of the U.S. National Seismic Hazard Models

    NASA Astrophysics Data System (ADS)

    Petersen, M. D.

    2017-12-01

    During 2018 the USGS will update the 2014 National Seismic Hazard Models by incorporating new seismicity models, ground motion models, site factors, fault inputs, and by improving weights to ground motion models using empirical and other data. We will update the earthquake catalog for the U.S. and introduce new rate models. Additional fault data will be used to improve rate estimates on active faults. New ground motion models (GMMs) and site factors for Vs30 have been released by the Pacific Earthquake Engineering Research Center (PEER) and we will consider these in assessing ground motions in craton and extended margin regions of the central and eastern U.S. The USGS will also include basin-depth terms for selected urban areas of the western United States to improve long-period shaking assessments using published depth estimates to 1.0 and 2.5 km/s shear wave velocities. We will produce hazard maps for input into the building codes that span a broad range of periods (0.1 to 5 s) and site classes (shear wave velocity from 2000 m/s to 200 m/s in the upper 30 m of the crust, Vs30). In the 2020 update we plan on including: a new national crustal model that defines basin depths required in the latest GMMs, new 3-D ground motion simulations for several urban areas, new magnitude-area equations, and new fault geodetic and geologic strain rate models. The USGS will also consider including new 3-D ground motion simulations for inclusion in these long-period maps. These new models are being evaluated and will be discussed at one or more regional and topical workshops held at the beginning of 2018.

  17. Validation of a novel mapping system and utility for mapping complex atrial tachycardias.

    PubMed

    Honarbakhsh, S; Hunter, R J; Dhillon, G; Ullah, W; Keating, E; Providencia, R; Chow, A; Earley, M J; Schilling, R J

    2018-03-01

    This study sought to validate a novel wavefront mapping system utilizing whole-chamber basket catheters (CARTOFINDER, Biosense Webster). The system was validated in terms of (1) mapping atrial-paced beats and (2) mapping complex wavefront patterns in atrial tachycardia (AT). Patients undergoing catheter ablation for AT and persistent AF were included. A 64-pole-basket catheter was used to acquire unipolar signals that were processed by CARTOFINDER mapping system to generate dynamic wavefront propagation maps. The left atrium was paced from four sites to demonstrate focal activation. ATs were mapped with the mechanism confirmed by conventional mapping, entrainment, and response to ablation. Twenty-two patients were included in the study (16 with AT and 6 with AF initially who terminated to AT during ablation). In total, 172 maps were created with the mapping system. It correctly identified atrial-pacing sites in all paced maps. It accurately mapped 9 focal/microreentrant and 18 macroreentrant ATs both in the left and right atrium. A third and fourth observer independently identified the sites of atrial pacing and the AT mechanism from the CARTOFINDER maps, while being blinded to the conventional activation maps. This novel mapping system was effectively validated by mapping focal activation patterns from atrial-paced beats. The system was also effective in mapping complex wavefront patterns in a range of ATs in patients with scarred atria. The system may therefore be of practical use in the mapping and ablation of AT and could have potential for mapping wavefront activations in AF. © 2018 Wiley Periodicals, Inc.

  18. Mapping landscape fire frequency for fire regime condition class

    Treesearch

    Dale A. Hamilton; Wendel J. Hann

    2015-01-01

    Fire Regime Condition Class (FRCC) is a departure index that compares the current amounts of the different vegetation succession classes, fire frequency, and fire severity to historic reference conditions. FRCC assessments have been widely used for evaluating ecosystem status in many areas of the U.S. in reports such as land use plans, fire management plans, project...

  19. Using the Gravity Model to Delineate a Trade Area: A Class Project.

    ERIC Educational Resources Information Center

    Dzik, Anthony J.

    1992-01-01

    Reports that students who might be bored or intimidated by economic geographic theory become enthusiastic when they can apply it to their own experiences. Describes a class project involving fieldwork and in-class analysis on delineating the retail trade area of a small Ohio city. Includes three maps and mathematical formulae for data analysis.…

  20. Examining the Conceptual Organization of Students in an Integrated Algebra and Physical Science Class.

    ERIC Educational Resources Information Center

    Westbrook, Susan L.

    1998-01-01

    Compares the conceptual organization of students in an integrated algebra and physical science class (SAM 9) with that of students in a discipline-specific physical science class (PSO). Analysis of students' concept maps indicates that the SAM9 students used a greater number of procedural linkages to connect mathematics and science concepts than…

  1. Chaotic map clustering algorithm for EEG analysis

    NASA Astrophysics Data System (ADS)

    Bellotti, R.; De Carlo, F.; Stramaglia, S.

    2004-03-01

    The non-parametric chaotic map clustering algorithm has been applied to the analysis of electroencephalographic signals, in order to recognize the Huntington's disease, one of the most dangerous pathologies of the central nervous system. The performance of the method has been compared with those obtained through parametric algorithms, as K-means and deterministic annealing, and supervised multi-layer perceptron. While supervised neural networks need a training phase, performed by means of data tagged by the genetic test, and the parametric methods require a prior choice of the number of classes to find, the chaotic map clustering gives a natural evidence of the pathological class, without any training or supervision, thus providing a new efficient methodology for the recognition of patterns affected by the Huntington's disease.

  2. Research Networks Map | Division of Cancer Prevention

    Cancer.gov

    The Division of Cancer Prevention supports major scientific collaborations and research networks at more than 100 sites across the United States. Seven Major Programs' sites are shown on this map. | The Division of Cancer Prevention supports major scientific collaborations and research networks at more than 100 sites across the United States.

  3. Geodiversity assessment for environmental management of geomorphosites: Derborence and Illgraben, Swiss Alps

    NASA Astrophysics Data System (ADS)

    Jaskulska, Alicja; Reynard, Emmanuel; Zwoliński, Zbigniew

    2013-04-01

    The concept of geodiversity was created relatively recently and has been accepted by geomorphologists and geologists worldwide. Nevertheless, despite the widespread use of the term, little progress has been made in its evaluation. Until now, only a few authors have undertaken, directly or indirectly, methodological issues related to the geodiversity estimation. In some studies, geodiversity maps were applied to investigate the spatial or genetic relationships with the richness of particular environmental elements like geosites, geomorphosites, geoarchaeological and palaeontological sites, etc. However, so far, the spatial differentiation of geodiversity values in areas already accepted as large geomorphosites has not been undertaken. This poster presents a new methodology developed to assess the geodiversity in geoinformation environments and tested in two geomorphosites located in the Swiss Alps: Derborence and Illgraben. Derborence is a quite isolated valley, where some big rockslides occurred in the past; the sharp rockslide landforms, high limestone cliffs and a lake dammed by the rockslide deposits attract tourists in summer. A part of the valley is a natural reserve managed by Pronatura (a national environmental association). Illgraben is a steep torrential system on the left bank of the Rhone River valley, characterized by high erosion rates and frequent occurrence of rockfalls and debris flows. The site is the largest active torrential system in Switzerland and is part of a Regional Nature Park. Both geomorphosites are recognized as geosites of national importance. The basis of the assessment is the selection of features of the geographical environment, which on one hand describe landforms, and on the other indicate geomorphometric differences. Firstly, seven factor maps were processed for each area: landform energy derived from a 25-meter digital elevation model, landform fragmentation generated from the Topographic Position Index (TPI), contemporary landform preservation derived from land use classification using high resolution ortho images, geological settings, geomorphological features, soils and hydrology elements. Input maps were then standardized by attributing grid geodiversity values in five classes to each raster map: very low geodiversity, low geodiversity, medium geodiversity, high geodiversity and very high geodiversity. Obtained maps result from map algebra operations carried out by multi criteria evaluation (MCE) with GIS-based Weighted Linear Combination (WLC) technique. The final geodiversity maps for each of the two geomorphosites were then compared with existing tourist trails and panoramic points to verify if there are any dependencies. Geosite inventories are a more or less qualitative selection of sites considered as important by the scientific community for their contribution to Earth history knowledge and more in general for the society. Some geosites, in particular geomorphosites, can be quite large (several sq. km), and sometimes heterogeneous. The proposed methodology, tested on two Swiss geomorphosites, allows the intrinsic geodiversity differentiation of large geosites to be assessed and the results could be used for other purposes such as the preservation of specific features within the geosite perimeter, spatial planning or tourist management.

  4. Cognitive Maps as a Way of Presenting the Dimension of Comparison within the History of Psychology.

    ERIC Educational Resources Information Center

    Diekhoff, George M.

    1982-01-01

    Describes how cognitive maps can help to stimulate discussion of the structural inter-relationships of psychological theory in college-level history of psychology classes. The author describes a cognitive mapping activity in which students pair prominent theorists and theories, rate their degrees of similarity, and graph the relationships of their…

  5. Design and analysis for thematic map accuracy assessment: Fundamental principles

    Treesearch

    Stephen V. Stehman; Raymond L. Czaplewski

    1998-01-01

    Land-cover maps are used in numerous natural resource applications to describe the spatial distribution and pattern of land-cover, to estimate areal extent of various cover classes, or as input into habitat suitability models, land-cover change analyses, hydrological models, and risk analyses. Accuracy assessment quantifies data quality so that map users may evaluate...

  6. Mapping forest canopy disturbance in the Upper Great Lakes, USA

    Treesearch

    James D. Garner; Mark D. Nelson; Brian G. Tavernia; Charles H. (Hobie) Perry; Ian W. Housman

    2015-01-01

    A map of forest canopy disturbance was generated for Michigan, Wisconsin, and most of Minnesota using 42 Landsat time series stacks (LTSS) and a vegetation change tracker (VCTw) algorithm. Corresponding winter imagery was used to reduce commission errors of forest disturbance by identifying areas of persistent snow cover. The resulting disturbance age map was classed...

  7. The use of witness trees as pyro-indicators for mapping past fire conditions

    Treesearch

    Melissa A. Thomas-Van Gundy; Gregory J. Nowacki

    2013-01-01

    Understanding and mapping presettlement fire regimes is vitally important for ecosystem restoration, helping ensure the proper placement of fire back into ecosystems that formerly burned. Witness trees can support this endeavor by serving as pyro-indicators of the past. We mapped fire-adapted traits across a landscape by categorizing trees into two classes, pyrophiles...

  8. Integrating a Digital Concept Mapping into a PPT Slide Writing Project

    ERIC Educational Resources Information Center

    Yen, Ai Chun; Yang, Pei Yi

    2013-01-01

    Carried out during a semester-long EFL (English as a foreign language) drama class, this research aimed to scrutinize the effects of digital concept mapping via LMS on English majors' (N = 38) PowerPoint (PPT) slide writing skills in Taiwan. Students were instructed to follow the concept mapping agenda via university learning management system…

  9. Mind Maps as Classroom Exercises

    ERIC Educational Resources Information Center

    Budd, John W.

    2004-01-01

    A Mind Map is an outline in which the major categories radiate from a central image and lesser categories are portrayed as branches of larger branches. The author describes an in-class exercise in which small groups of students each create a Mind Map for a specific topic. This exercise is another example of an active and collaborative learning…

  10. Origins of Allostery and Evolvability in Proteins: A Case Study.

    PubMed

    Raman, Arjun S; White, K Ian; Ranganathan, Rama

    2016-07-14

    Proteins display the capacity for adaptation to new functions, a property critical for evolvability. But what structural principles underlie the capacity for adaptation? Here, we show that adaptation to a physiologically distinct class of ligand specificity in a PSD95, DLG1, ZO-1 (PDZ) domain preferentially occurs through class-bridging intermediate mutations located distant from the ligand-binding site. These mutations provide a functional link between ligand classes and demonstrate the principle of "conditional neutrality" in mediating evolutionary adaptation. Structures show that class-bridging mutations work allosterically to open up conformational plasticity at the active site, permitting novel functions while retaining existing function. More generally, the class-bridging phenotype arises from mutations in an evolutionarily conserved network of coevolving amino acids in the PDZ family (the sector) that connects the active site to distant surface sites. These findings introduce the concept that allostery in proteins could have its origins not in protein function but in the capacity to adapt. Copyright © 2016 Elsevier Inc. All rights reserved.

  11. BOREAS TE-23 Map Plot Data

    NASA Technical Reports Server (NTRS)

    Rich, Paul M.; Fournier, Robert; Hall, Forrest G. (Editor); Papagno, Andrea (Editor)

    2000-01-01

    The Boreal Ecosystem-Atmospheric Study (BOREAS) TE-23 (Terrestrial Ecology) team collected map plot data in support of its efforts to characterize and interpret information on canopy architecture and understory cover at the BOREAS tower flux sites and selected auxiliary sites from May to August 1994. Mapped plots (typical dimensions 50 m x 60 m) were set up and characterized at all BOREAS forested tower flux and selected auxiliary sites. Detailed measurement of the mapped plots included: (1) stand characteristics (location, density, basal area); (2) map locations diameter at breast height (DBH) of all trees; (3) detailed geometric measures of a subset of trees (height, crown dimensions); and (4) understory cover maps. The data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

  12. 23 CFR 750.107 - Class 3 and 4 signs outside informational sites.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... areas. (6) Not more than one such sign advertising activities being conducted as a single enterprise or... 23 Highways 1 2011-04-01 2011-04-01 false Class 3 and 4 signs outside informational sites. 750.107... to the Interstate System Under the 1958 Bonus Program § 750.107 Class 3 and 4 signs outside...

  13. 23 CFR 750.107 - Class 3 and 4 signs outside informational sites.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... areas. (6) Not more than one such sign advertising activities being conducted as a single enterprise or... 23 Highways 1 2010-04-01 2010-04-01 false Class 3 and 4 signs outside informational sites. 750.107... to the Interstate System Under the 1958 Bonus Program § 750.107 Class 3 and 4 signs outside...

  14. Land cover heterogeneity and soil respiration in a west Greenland tundra landscape

    NASA Astrophysics Data System (ADS)

    Bradley-Cook, J. I.; Burzynski, A.; Hammond, C. R.; Virginia, R. A.

    2011-12-01

    Multiple direct and indirect pathways underlie the association between land cover classification, temperature and soil respiration. Temperature is a main control of the biological processes that constitute soil respiration, yet the effect of changing atmospheric temperatures on soil carbon flux is unresolved. This study examines associations amongst land cover, soil carbon characteristics, soil respiration, and temperature in an Arctic tundra landscape in western Greenland. We used a 1.34 meter resolution multi-spectral WorldView2 satellite image to conduct an unsupervised multi-staged ISODATA classification to characterize land cover heterogeneity. The four band image was taken on July 10th, 2010, and captures an 18 km by 15 km area in the vicinity of Kangerlussuaq. The four major terrestrial land cover classes identified were: shrub-dominated, graminoid-dominated, mixed vegetation, and bare soil. The bare soil class was comprised of patches where surface soil has been deflated by wind and ridge-top fellfield. We hypothesize that soil respiration and soil carbon storage are associated with land cover classification and temperature. We set up a hierarchical field sampling design to directly observe spatial variation between and within land cover classes along a 20 km temperature gradient extending west from Russell Glacier on the margin of the Greenland Ice Sheet. We used the land cover classification map and ground verification to select nine sites, each containing patches of the four land cover classes. Within each patch we collected soil samples from a 50 cm pit, quantified vegetation, measured active layer depth and determined landscape characteristics. From a subset of field sites we collected additional 10 cm surface soil samples to estimate soil heterogeneity within patches and measured soil respiration using a LiCor 8100 Infrared Gas Analyzer. Soil respiration rates varied with land cover classes, with values ranging from 0.2 mg C/m^2/hr in the bare soil class to over 5 mg C/m^2/hr in the graminoid-dominated class. These findings suggest that shifts in land cover vegetation types, especially soil and vegetation loss (e.g. from wind deflation), can alter landscape soil respiration. We relate soil respiration measurements to soil, vegetation, and permafrost characteristics to understand how ecosystem properties and processes vary at the landscape scale. A long-term goal of this research is to develop a spatially explicit model of soil organic matter, soil respiration, and temperature sensitivity of soil carbon dynamics for a western Greenland permafrost tundra ecosystems.

  15. Evaluation of Site Amplification Functions For Generalized Soil Types Using Earthquake Records and Spectral Models

    NASA Astrophysics Data System (ADS)

    Sokolov, V.; Loh, C. H.; Wen, K. L.

    When evaluating the local site influence on seismic ground motion, in certain cases (e.g. building codes provisions) it is sufficient to describe the variety of soil condi- tions by a few number of generalized site classes. The site classification system that is widely used at present is based on on the properties of top 30 m of soil column, dis- regarding the characteristics of the deeper geology. Six site categories are defined on the basis of averaged shear waves velocity, namely: A - hard rock; B - rock; C - very dense or stiff soil; D - stiff soil; E - soft soil; F - soils requiring special studies. The generalized site amplification curves were developed for several site classes in west- ern US (Boore and Joyner, 1997) and Greece (Klimis et al., 1999) using available geotechnical data from near-surface boreholes. We propose to evaluate the amplifica- tion functions as the ratios between the spectra of real earthquakes recordings and the spectra modeled for "very hard rock" (VHR) conditions. The VHR spectra (regional source scaling and attenuation models) are constructed on the basis of ground motion records. The approach allows, on the one hand, to analyze all obtained records. On the other hand, it is possible to test applicability of the used spectral model. Moreover, the uncertainty of site response may be evaluated and described in terms of random variable characteristics to be considered in seismic hazard analysis. The results of the approach application are demonstrated for the case of Taiwan region. The char- acteristics of site amplification functions (mean values and standard deviation) were determined and analyzed in frequency range of 0.2-13 Hz for site classes B and C us- ing recordings of the 1999 Chi-Chi, Taiwan, earthquake (M=7.6), strong aftershocks (M=6.8), and several earthquakes (M < 6.5) occurred in the region in 1995-1998. When comparing the empirical amplification function resulting from the Taiwan data with that proposed for western US, it has been shown that, for both class B and class C, the US amplification functions exhibit lower values than Taiwan class B function for frequencies 1-8 Hz. The Hellenic class C amplification shows, in general, the sim- ilar shape and amplitude as that evaluated for Taiwan region. Thus, the generalized site amplification curves should be also considered as region-dependent functions.

  16. Landscape models of brook trout abundance and distribution in lotic habitat with field validation

    USGS Publications Warehouse

    McKenna, James E.; Johnson, James H.

    2011-01-01

    Brook trout Salvelinus fontinalis are native fish in decline owing to environmental changes. Predictions of their potential distribution and a better understanding of their relationship to habitat conditions would enhance the management and conservation of this valuable species. We used over 7,800 brook trout observations throughout New York State and georeferenced, multiscale landscape condition data to develop four regionally specific artificial neural network models to predict brook trout abundance in rivers and streams. Land cover data provided a general signature of human activity, but other habitat variables were resistant to anthropogenic changes (i.e., changing on a geological time scale). The resulting models predict the potential for any stream to support brook trout. The models were validated by holding 20% of the data out as a test set and by comparison with additional field collections from a variety of habitat types. The models performed well, explaining more than 90% of data variability. Errors were often associated with small spatial displacements of predicted values. When compared with the additional field collections (39 sites), 92% of the predictions were off by only a single class from the field-observed abundances. Among “least-disturbed” field collection sites, all predictions were correct or off by a single abundance class, except for one where brown trout Salmo trutta were present. Other degrading factors were evident at most sites where brook trout were absent or less abundant than predicted. The most important habitat variables included landscape slope, stream and drainage network sizes, water temperature, and extent of forest cover. Predicted brook trout abundances were applied to all New York streams, providing a synoptic map of the distribution of brook trout habitat potential. These fish models set benchmarks of best potential for streams to support brook trout under broad-scale human influences and can assist with planning and identification of protection or rehabilitation sites.

  17. Gene duplication and fragmentation in the zebra finch major histocompatibility complex.

    PubMed

    Balakrishnan, Christopher N; Ekblom, Robert; Völker, Martin; Westerdahl, Helena; Godinez, Ricardo; Kotkiewicz, Holly; Burt, David W; Graves, Tina; Griffin, Darren K; Warren, Wesley C; Edwards, Scott V

    2010-04-01

    Due to its high polymorphism and importance for disease resistance, the major histocompatibility complex (MHC) has been an important focus of many vertebrate genome projects. Avian MHC organization is of particular interest because the chicken Gallus gallus, the avian species with the best characterized MHC, possesses a highly streamlined minimal essential MHC, which is linked to resistance against specific pathogens. It remains unclear the extent to which this organization describes the situation in other birds and whether it represents a derived or ancestral condition. The sequencing of the zebra finch Taeniopygia guttata genome, in combination with targeted bacterial artificial chromosome (BAC) sequencing, has allowed us to characterize an MHC from a highly divergent and diverse avian lineage, the passerines. The zebra finch MHC exhibits a complex structure and history involving gene duplication and fragmentation. The zebra finch MHC includes multiple Class I and Class II genes, some of which appear to be pseudogenes, and spans a much more extensive genomic region than the chicken MHC, as evidenced by the presence of MHC genes on each of seven BACs spanning 739 kb. Cytogenetic (FISH) evidence and the genome assembly itself place core MHC genes on as many as four chromosomes with TAP and Class I genes mapping to different chromosomes. MHC Class II regions are further characterized by high endogenous retroviral content. Lastly, we find strong evidence of selection acting on sites within passerine MHC Class I and Class II genes. The zebra finch MHC differs markedly from that of the chicken, the only other bird species with a complete genome sequence. The apparent lack of synteny between TAP and the expressed MHC Class I locus is in fact reminiscent of a pattern seen in some mammalian lineages and may represent convergent evolution. Our analyses of the zebra finch MHC suggest a complex history involving chromosomal fission, gene duplication and translocation in the history of the MHC in birds, and highlight striking differences in MHC structure and organization among avian lineages.

  18. Using Research Data to Stimulate Critical Thinking in Undergraduate Geoscience Courses: Examples and Future Directions

    NASA Astrophysics Data System (ADS)

    Reed, D. L.; Moore, G. F.; Bangs, N. L.; Tobin, H.

    2007-12-01

    The results of major research initiatives, such as NSF-MARGINS, IODP and its predecessors DSDP and ODP, Ridge 2000, and NOAA's Ocean Explorer and Vents Programs provide a rich library of resources for inquiry-based learning in undergraduate classes in the geosciences. These materials are scalable for use in general education courses for the non-science major to upper division major and graduate courses, which are both content-rich and research-based. Examples of these materials include images and animations drawn from computer presentations at research workshops and audio/video clips from web sites, as well as data repositories, which can be accessed through GeoMapApp, a data exploration and visualization tool developed as part of the Marine Geoscience Data System by researchers at the LDEO (http://www.geomapapp.org/). Past efforts have focused on recreating sea-going research experiences by integrating and repurposing these data in web-based virtual environments to stimulate active student participation in laboratory settings and at a distance over the WWW. Virtual expeditions have been created based on multibeam mapping of the seafloor near the Golden Gate, bathymetric transects of the major ocean basins, subduction zone seismicity and related tsunamis, water column mapping and submersible dives at hydrothermal vents, and ocean drilling of deep-sea sediments to explore climate change. Students also make use of multichannel seismic data provided through the Marine Seismic Data Center of UTIG to study subduction zone processes at convergent plate boundaries. We will present the initial stages of development of a web-based virtual expedition for use in undergraduate classes, based on a recent 3-D seismic survey associated with the NanTroSEIZE program of NSF-MARGINS and IODP to study the properties of the plate boundary fault system in the upper limit of the seismogenic zone off Japan.

  19. 3D-QSAR and Molecular Docking Studies on Derivatives of MK-0457, GSK1070916 and SNS-314 as Inhibitors against Aurora B Kinase

    PubMed Central

    Zhang, Baidong; Li, Yan; Zhang, Huixiao; Ai, Chunzhi

    2010-01-01

    Development of anticancer drugs targeting Aurora B, an important member of the serine/threonine kinases family, has been extensively focused on in recent years. In this work, by applying an integrated computational method, including comparative molecular field analysis (CoMFA), comparative molecular similarity indices analysis (CoMSIA), homology modeling and molecular docking, we investigated the structural determinants of Aurora B inhibitors based on three different series of derivatives of 108 molecules. The resultant optimum 3D-QSAR models exhibited (q2 = 0.605, r2pred = 0.826), (q2 = 0.52, r2pred = 0.798) and (q2 = 0.582, r2pred = 0.971) for MK-0457, GSK1070916 and SNS-314 classes, respectively, and the 3D contour maps generated from these models were analyzed individually. The contour map analysis for the MK-0457 model revealed the relative importance of steric and electrostatic effects for Aurora B inhibition, whereas, the electronegative groups with hydrogen bond donating capacity showed a great impact on the inhibitory activity for the derivatives of GSK1070916. Additionally, the predictive model of the SNS-314 class revealed the great importance of hydrophobic favorable contour, since hydrophobic favorable substituents added to this region bind to a deep and narrow hydrophobic pocket composed of residues that are hydrophobic in nature and thus enhanced the inhibitory activity. Moreover, based on the docking study, a further comparison of the binding modes was accomplished to identify a set of critical residues that play a key role in stabilizing the drug-target interactions. Overall, the high level of consistency between the 3D contour maps and the topographical features of binding sites led to our identification of several key structural requirements for more potency inhibitors. Taken together, the results will serve as a basis for future drug development of inhibitors against Aurora B kinase for various tumors. PMID:21151441

  20. 3D-QSAR and molecular docking studies on derivatives of MK-0457, GSK1070916 and SNS-314 as inhibitors against Aurora B kinase.

    PubMed

    Zhang, Baidong; Li, Yan; Zhang, Huixiao; Ai, Chunzhi

    2010-11-02

    Development of anticancer drugs targeting Aurora B, an important member of the serine/threonine kinases family, has been extensively focused on in recent years. In this work, by applying an integrated computational method, including comparative molecular field analysis (CoMFA), comparative molecular similarity indices analysis (CoMSIA), homology modeling and molecular docking, we investigated the structural determinants of Aurora B inhibitors based on three different series of derivatives of 108 molecules. The resultant optimum 3D-QSAR models exhibited (q(2) = 0.605, r(2) (pred) = 0.826), (q(2) = 0.52, r(2) (pred) = 0.798) and (q(2) = 0.582, r(2) (pred) = 0.971) for MK-0457, GSK1070916 and SNS-314 classes, respectively, and the 3D contour maps generated from these models were analyzed individually. The contour map analysis for the MK-0457 model revealed the relative importance of steric and electrostatic effects for Aurora B inhibition, whereas, the electronegative groups with hydrogen bond donating capacity showed a great impact on the inhibitory activity for the derivatives of GSK1070916. Additionally, the predictive model of the SNS-314 class revealed the great importance of hydrophobic favorable contour, since hydrophobic favorable substituents added to this region bind to a deep and narrow hydrophobic pocket composed of residues that are hydrophobic in nature and thus enhanced the inhibitory activity. Moreover, based on the docking study, a further comparison of the binding modes was accomplished to identify a set of critical residues that play a key role in stabilizing the drug-target interactions. Overall, the high level of consistency between the 3D contour maps and the topographical features of binding sites led to our identification of several key structural requirements for more potency inhibitors. Taken together, the results will serve as a basis for future drug development of inhibitors against Aurora B kinase for various tumors.

  1. Blue Ribbon Web Sites Contest Winners.

    ERIC Educational Resources Information Center

    Southworth, Samuel A.

    2001-01-01

    Presents a collection of prize-winning Web sites created by K-8 teachers nationwide. Some of the unique features of the Web sites include an online student-written newspaper; a sing-along section; a chronicle of the past 3 years of classes to see how the classes have evolved; and student art and writing projects. (SM)

  2. Digital modelling of landscape and soil in a mountainous region: A neuro-fuzzy approach

    NASA Astrophysics Data System (ADS)

    Viloria, Jesús A.; Viloria-Botello, Alvaro; Pineda, María Corina; Valera, Angel

    2016-01-01

    Research on genetic relationships between soil and landforms has largely improved soil mapping. Recent technological advances have created innovative methods for modelling the spatial soil variation from digital elevation models (DEMs) and remote sensors. This generates new opportunities for the application of geomorphology to soil mapping. This study applied a method based on artificial neural networks and fuzzy clustering to recognize digital classes of land surfaces in a mountainous area in north-central Venezuela. The spatial variation of the fuzzy memberships exposed the areas where each class predominates, while the class centres helped to recognize the topographic attributes and vegetation cover of each class. The obtained classes of terrain revealed the structure of the land surface, which showed regional differences in climate, vegetation, and topography and landscape stability. The land-surface classes were subdivided on the basis of the geological substratum to produce landscape classes that additionally considered the influence of soil parent material. These classes were used as a framework for soil sampling. A redundancy analysis confirmed that changes of landscape classes explained the variation in soil properties (p = 0.01), and a Kruskal-Wallis test showed significant differences (p = 0.01) in clay, hydraulic conductivity, soil organic carbon, base saturation, and exchangeable Ca and Mg between classes. Thus, the produced landscape classes correspond to three-dimensional bodies that differ in soil conditions. Some changes of land-surface classes coincide with abrupt boundaries in the landscape, such as ridges and thalwegs. However, as the model is continuous, it disclosed the remaining variation between those boundaries.

  3. Mapping for Depth and Variety: Using a "Six W's" Scaffold to Facilitate Concept Mapping for Different History Concepts with Different Degrees of Freedom

    ERIC Educational Resources Information Center

    Tzeng, Jeng-Yi

    2014-01-01

    This study examines how 98 students in Taiwan taking a typical high-school history class composed concept maps related to both an everyday concept and an academic-oriented unique concept with various degrees of freedom in concept mapping. In order to reveal the multidimensionality of history concepts, this study provided participants a 6W scaffold…

  4. World Cultural Geography without Maps, How Can We Find Our Way? An Assessment of Implementing Map Use in Senior High School World Cultural Geography Classes

    ERIC Educational Resources Information Center

    Ryan, Patrick

    2007-01-01

    This article is designed to illustrate the critical importance of utilizing cartographic representations, i.e., maps in aiding in the increase of academic scores in regards to World Geography at the 10th grade level. The issue of using maps to better a student's comprehension of various world cultures is essential. It is my contention that the…

  5. Semantic 3d City Model to Raster Generalisation for Water Run-Off Modelling

    NASA Astrophysics Data System (ADS)

    Verbree, E.; de Vries, M.; Gorte, B.; Oude Elberink, S.; Karimlou, G.

    2013-09-01

    Water run-off modelling applied within urban areas requires an appropriate detailed surface model represented by a raster height grid. Accurate simulations at this scale level have to take into account small but important water barriers and flow channels given by the large-scale map definitions of buildings, street infrastructure, and other terrain objects. Thus, these 3D features have to be rasterised such that each cell represents the height of the object class as good as possible given the cell size limitations. Small grid cells will result in realistic run-off modelling but with unacceptable computation times; larger grid cells with averaged height values will result in less realistic run-off modelling but fast computation times. This paper introduces a height grid generalisation approach in which the surface characteristics that most influence the water run-off flow are preserved. The first step is to create a detailed surface model (1:1.000), combining high-density laser data with a detailed topographic base map. The topographic map objects are triangulated to a set of TIN-objects by taking into account the semantics of the different map object classes. These TIN objects are then rasterised to two grids with a 0.5m cell-spacing: one grid for the object class labels and the other for the TIN-interpolated height values. The next step is to generalise both raster grids to a lower resolution using a procedure that considers the class label of each cell and that of its neighbours. The results of this approach are tested and validated by water run-off model runs for different cellspaced height grids at a pilot area in Amersfoort (the Netherlands). Two national datasets were used in this study: the large scale Topographic Base map (BGT, map scale 1:1.000), and the National height model of the Netherlands AHN2 (10 points per square meter on average). Comparison between the original AHN2 height grid and the semantically enriched and then generalised height grids shows that water barriers are better preserved with the new method. This research confirms the idea that topographical information, mainly the boundary locations and object classes, can enrich the height grid for this hydrological application.

  6. Topographic soil wetness index derived from combined Alaska-British Columbia datasets for the Gulf of Alaska region

    NASA Astrophysics Data System (ADS)

    D'Amore, D. V.; Biles, F. E.

    2016-12-01

    The flow of water is often highlighted as a priority in land management planning and assessments related to climate change. Improved measurement and modeling of soil moisture is required to develop predictive estimates for plant distributions, soil moisture, and snowpack, which all play important roles in ecosystem planning in the face of climate change. Drainage indexes are commonly derived from GIS tools with digital elevation models. Soil moisture classes derived from these tools are useful digital proxies for ecosystem functions associated with the concentration of water on the landscape. We developed a spatially explicit topographically derived soil wetness index (TWI) across the perhumid coastal temperate rainforest (PCTR) of Alaska and British Columbia. Developing applicable drainage indexes in complex terrain and across broad areas required careful application of the appropriate DEM, caution with artifacts in GIS covers and mapping realistic zones of wetlands with the indicator. The large spatial extent of the model has facilitated the mapping of forest habitat and the development of water table depth mapping in the region. A key element of the TWI is the merging of elevation datasets across the US-Canada border where major rivers transect the international boundary. The unified TWI allows for seemless mapping across the international border and unified ecological applications. A python program combined with the unified DEM allows end users to quickly apply the TWI to all areas of the PCTR. This common platform can facilitate model comparison and improvements to local soil moisture conditions, generation of streamflow, and ecological site conditions. In this presentation we highlight the application of the TWI for mapping risk factors related to forest decline and the development of a regional water table depth map. Improved soil moisture maps are critical for deriving spatial models of changes in soil moisture for both plant growth and streamflow across future climate conditions.

  7. Rumination disorder

    MedlinePlus

    ... MedlinePlus GO GO About MedlinePlus Site Map FAQs Customer Support Health Topics Drugs & Supplements Videos & Tools Español ... ADAM Health Solutions. About MedlinePlus Site Map FAQs Customer Support Get email updates Subscribe to RSS Follow ...

  8. 7 CFR 1940.309 - Responsibilities of the prospective applicant.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... project elements and the proposed site(s) to include location maps, topographic maps, and photographs when... agency under Public Law 103-354 of a Soil Conservation Service (SCS) environmental assessment or...

  9. Email Updates

    MedlinePlus

    ... MedlinePlus GO GO About MedlinePlus Site Map FAQs Customer Support Health Topics Drugs & Supplements Videos & Tools Español ... spam" or "junk." About MedlinePlus Site Map FAQs Customer Support Get email updates Subscribe to RSS Follow ...

  10. Comparing the performance of various digital soil mapping approaches to map physical soil properties

    NASA Astrophysics Data System (ADS)

    Laborczi, Annamária; Takács, Katalin; Pásztor, László

    2015-04-01

    Spatial information on physical soil properties is intensely expected, in order to support environmental related and land use management decisions. One of the most widely used properties to characterize soils physically is particle size distribution (PSD), which determines soil water management and cultivability. According to their size, different particles can be categorized as clay, silt, or sand. The size intervals are defined by national or international textural classification systems. The relative percentage of sand, silt, and clay in the soil constitutes textural classes, which are also specified miscellaneously in various national and/or specialty systems. The most commonly used is the classification system of the United States Department of Agriculture (USDA). Soil texture information is essential input data in meteorological, hydrological and agricultural prediction modelling. Although Hungary has a great deal of legacy soil maps and other relevant soil information, it often occurs, that maps do not exist on a certain characteristic with the required thematic and/or spatial representation. The recent developments in digital soil mapping (DSM), however, provide wide opportunities for the elaboration of object specific soil maps (OSSM) with predefined parameters (resolution, accuracy, reliability etc.). Due to the simultaneous richness of available Hungarian legacy soil data, spatial inference methods and auxiliary environmental information, there is a high versatility of possible approaches for the compilation of a given soil map. This suggests the opportunity of optimization. For the creation of an OSSM one might intend to identify the optimum set of soil data, method and auxiliary co-variables optimized for the resources (data costs, computation requirements etc.). We started comprehensive analysis of the effects of the various DSM components on the accuracy of the output maps on pilot areas. The aim of this study is to compare and evaluate different digital soil mapping methods and sets of ancillary variables for producing the most accurate spatial prediction of texture classes in a given area of interest. Both legacy and recently collected data on PSD were used as reference information. The predictor variable data set consisted of digital elevation model and its derivatives, lithology, land use maps as well as various bands and indices of satellite images. Two conceptionally different approaches can be applied in the mapping process. Textural classification can be realized after particle size data were spatially extended by proper geostatistical method. Alternatively, the textural classification is carried out first, followed by the spatial extension through suitable data mining method. According to the first approach, maps of sand, silt and clay percentage have been computed through regression kriging (RK). Since the three maps are compositional (their sum must be 100%), we applied Additive Log-Ratio (alr) transformation, instead of kriging them independently. Finally, the texture class map has been compiled according to the USDA categories from the three maps. Different combinations of reference and training soil data and auxiliary covariables resulted several different maps. On the basis of the other way, the PSD were classified firstly into the USDA categories, then the texture class maps were compiled directly by data mining methods (classification trees and random forests). The various results were compared to each other as well as to the RK maps. The performance of the different methods and data sets has been examined by testing the accuracy of the geostatistically computed and the directly classified results to assess the most predictive and accurate method. Acknowledgement: Our work was supported by the Hungarian National Scientific Research Foundation (OTKA, Grant No. K105167).

  11. A GIS-BASED MULTI-CRITERIA EVALUATION SYSTEM FOR SELECTION OF LANDFILL SITES: a case study from Abu Dhabi, United Arab Emirates

    NASA Astrophysics Data System (ADS)

    Issa, S. M.; Shehhi, B. Al

    2012-07-01

    Landfill sites receive 92% of total annual solid waste produced by municipalities in the emirate of Abu Dhabi. In this study, candidate sites for an appropriate landfill location for the Abu Dhabi municipal area are determined by integrating geographic information systems (GIS) and multi-criteria evaluation (MCE) analysis. To identify appropriate landfill sites, eight input map layers including proximity to urban areas, proximity to wells and water table depth, geology and topography, proximity to touristic and archeological sites, distance from roads network, distance from drainage networks, and land slope are used in constraint mapping. A final map was generated which identified potential areas showing suitability for the location of the landfill site. Results revealed that 30% of the study area was identified as highly suitable, 25% as suitable, and 45% as unsuitable. The selection of the final landfill site, however, requires further field research.

  12. How do Japanese escape from TSUNAMI? - Disaster Prevention Education through using Hazard Maps

    NASA Astrophysics Data System (ADS)

    Sakaue, Hiroaki

    2013-04-01

    After the disaster of the earthquake and tsunami in Tohoku, Japan in 2011, it is necessary to teach more "Disaster Prevention" in school. The government guideline for education of high school geography students emphasizes improving students' awareness of disaster prevention through acquiring geographical skills, for example reading hazard and thematic maps. The working group of the Ministry of Education, Culture, Sports, Science and Technology (MEXT) says that the purpose of Disaster Prevention Education is to develop the following competencies: 1. To acquire knowledge about disasters in the local area and the science of disaster prevention. 2. To teach individuals to protect themselves from natural hazards. 3. To safely support other people in the local area. 4. To build a safe society during rebuilding from the disasters. "Disaster Prevention Education" is part of the "Education for Sustainable Development" (ESD) curriculum. That is, teaching disaster prevention can contribute to developing abilities for sustainable development and building a sustainable society. I have tried to develop a high school geography class about "tsunami". The aim of this class is to develop the students' competencies to acquire the knowledge about tsunami and protect themselves from it through reading a hazard map. I especially think that in geography class, students can protect themselves from disasters through learning the risks of disasters and how to escape when disasters occur. In the first part of class, I have taught the mechanism of tsunami formation and where tsunamis occur in Japan. In the second part of class, I have shown students pictures that I had taken in Tohoku, for instance Ishinomaki-City, Minamisanriku-Town, Kesen'numa-City, and taught how to read hazard maps that show where safe and dangerous places are when natural hazards occur. I think that students can understand the features of the local area and how to escape from disasters that may occur in local area by learning a hazard map. I have used a comment paper to evaluate the following competencies: 1. Students can understand the mechanism of tsunami formation and its potential for damage. 2. Students can read the hazard map. 3. Students can explain or describe a detailed plan for disaster prevention. In conclusion, many students could read hazard maps and describe a detailed plan for disaster prevention. In other words, through developing mapping skills, geography students can contribute to developing abilities for Disaster Prevention Education and building a sustainable society. Disaster Prevention Education has many requirements. For example, the MEXT working group says that Disaster Prevention Education teaching should not only deliver knowledge but also develop students' problem solving competency, and that it is important to incorporate this education within each subject area in the school.

  13. PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications.

    PubMed

    Chaudhuri, Rima; Sadrieh, Arash; Hoffman, Nolan J; Parker, Benjamin L; Humphrey, Sean J; Stöckli, Jacqueline; Hill, Adam P; James, David E; Yang, Jean Yee Hwa

    2015-08-19

    Most biological processes are influenced by protein post-translational modifications (PTMs). Identifying novel PTM sites in different organisms, including humans and model organisms, has expedited our understanding of key signal transduction mechanisms. However, with increasing availability of deep, quantitative datasets in diverse species, there is a growing need for tools to facilitate cross-species comparison of PTM data. This is particularly important because functionally important modification sites are more likely to be evolutionarily conserved; yet cross-species comparison of PTMs is difficult since they often lie in structurally disordered protein domains. Current tools that address this can only map known PTMs between species based on known orthologous phosphosites, and do not enable the cross-species mapping of newly identified modification sites. Here, we addressed this by developing a web-based software tool, PhosphOrtholog ( www.phosphortholog.com ) that accurately maps protein modification sites between different species. This facilitates the comparison of datasets derived from multiple species, and should be a valuable tool for the proteomics community. Here we describe PhosphOrtholog, a web-based application for mapping known and novel orthologous PTM sites from experimental data obtained from different species. PhosphOrtholog is the only generic and automated tool that enables cross-species comparison of large-scale PTM datasets without relying on existing PTM databases. This is achieved through pairwise sequence alignment of orthologous protein residues. To demonstrate its utility we apply it to two sets of human and rat muscle phosphoproteomes generated following insulin and exercise stimulation, respectively, and one publicly available mouse phosphoproteome following cellular stress revealing high mapping and coverage efficiency. Although coverage statistics are dataset dependent, PhosphOrtholog increased the number of cross-species mapped sites in all our example data sets by more than double when compared to those recovered using existing resources such as PhosphoSitePlus. PhosphOrtholog is the first tool that enables mapping of thousands of novel and known protein phosphorylation sites across species, accessible through an easy-to-use web interface. Identification of conserved PTMs across species from large-scale experimental data increases our knowledgebase of functional PTM sites. Moreover, PhosphOrtholog is generic being applicable to other PTM datasets such as acetylation, ubiquitination and methylation.

  14. A Bayesian-Based Novel Methodology to Generate Reliable Site Response Mapping Sensitive to Data Uncertainties

    NASA Astrophysics Data System (ADS)

    Chakraborty, A.; Goto, H.

    2017-12-01

    The 2011 off the Pacific coast of Tohoku earthquake caused severe damage in many areas further inside the mainland because of site-amplification. Furukawa district in Miyagi Prefecture, Japan recorded significant spatial differences in ground motion even at sub-kilometer scales. The site responses in the damage zone far exceeded the levels in the hazard maps. A reason why the mismatch occurred is that mapping follow only the mean value at the measurement locations with no regard to the data uncertainties and thus are not always reliable. Our research objective is to develop a methodology to incorporate data uncertainties in mapping and propose a reliable map. The methodology is based on a hierarchical Bayesian modeling of normally-distributed site responses in space where the mean (μ), site-specific variance (σ2) and between-sites variance(s2) parameters are treated as unknowns with a prior distribution. The observation data is artificially created site responses with varying means and variances for 150 seismic events across 50 locations in one-dimensional space. Spatially auto-correlated random effects were added to the mean (μ) using a conditionally autoregressive (CAR) prior. The inferences on the unknown parameters are done using Markov Chain Monte Carlo methods from the posterior distribution. The goal is to find reliable estimates of μ sensitive to uncertainties. During initial trials, we observed that the tau (=1/s2) parameter of CAR prior controls the μ estimation. Using a constraint, s = 1/(k×σ), five spatial models with varying k-values were created. We define reliability to be measured by the model likelihood and propose the maximum likelihood model to be highly reliable. The model with maximum likelihood was selected using a 5-fold cross-validation technique. The results show that the maximum likelihood model (μ*) follows the site-specific mean at low uncertainties and converges to the model-mean at higher uncertainties (Fig.1). This result is highly significant as it successfully incorporates the effect of data uncertainties in mapping. This novel approach can be applied to any research field using mapping techniques. The methodology is now being applied to real records from a very dense seismic network in Furukawa district, Miyagi Prefecture, Japan to generate a reliable map of the site responses.

  15. Tertiary model of a plant cellulose synthase

    PubMed Central

    Sethaphong, Latsavongsakda; Haigler, Candace H.; Kubicki, James D.; Zimmer, Jochen; Bonetta, Dario; DeBolt, Seth; Yingling, Yaroslava G.

    2013-01-01

    A 3D atomistic model of a plant cellulose synthase (CESA) has remained elusive despite over forty years of experimental effort. Here, we report a computationally predicted 3D structure of 506 amino acids of cotton CESA within the cytosolic region. Comparison of the predicted plant CESA structure with the solved structure of a bacterial cellulose-synthesizing protein validates the overall fold of the modeled glycosyltransferase (GT) domain. The coaligned plant and bacterial GT domains share a six-stranded β-sheet, five α-helices, and conserved motifs similar to those required for catalysis in other GT-2 glycosyltransferases. Extending beyond the cross-kingdom similarities related to cellulose polymerization, the predicted structure of cotton CESA reveals that plant-specific modules (plant-conserved region and class-specific region) fold into distinct subdomains on the periphery of the catalytic region. Computational results support the importance of the plant-conserved region and/or class-specific region in CESA oligomerization to form the multimeric cellulose–synthesis complexes that are characteristic of plants. Relatively high sequence conservation between plant CESAs allowed mapping of known mutations and two previously undescribed mutations that perturb cellulose synthesis in Arabidopsis thaliana to their analogous positions in the modeled structure. Most of these mutation sites are near the predicted catalytic region, and the confluence of other mutation sites supports the existence of previously undefined functional nodes within the catalytic core of CESA. Overall, the predicted tertiary structure provides a platform for the biochemical engineering of plant CESAs. PMID:23592721

  16. 7 CFR 12.31 - On-site wetland identification criteria.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... CONSERVATION Wetland Conservation § 12.31 On-site wetland identification criteria. (a) Hydric soils. (1) NRCS shall identify hydric soils through the use of published soil maps which reflect soil surveys completed by NRCS or through the use of on-site reviews. If a published soil map is unavailable for a given...

  17. 7 CFR 12.31 - On-site wetland identification criteria.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... CONSERVATION Wetland Conservation § 12.31 On-site wetland identification criteria. (a) Hydric soils. (1) NRCS shall identify hydric soils through the use of published soil maps which reflect soil surveys completed by NRCS or through the use of on-site reviews. If a published soil map is unavailable for a given...

  18. 7 CFR 12.31 - On-site wetland identification criteria.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... CONSERVATION Wetland Conservation § 12.31 On-site wetland identification criteria. (a) Hydric soils. (1) NRCS shall identify hydric soils through the use of published soil maps which reflect soil surveys completed by NRCS or through the use of on-site reviews. If a published soil map is unavailable for a given...

  19. 7 CFR 12.31 - On-site wetland identification criteria.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... CONSERVATION Wetland Conservation § 12.31 On-site wetland identification criteria. (a) Hydric soils. (1) NRCS shall identify hydric soils through the use of published soil maps which reflect soil surveys completed by NRCS or through the use of on-site reviews. If a published soil map is unavailable for a given...

  20. 7 CFR 12.31 - On-site wetland identification criteria.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... CONSERVATION Wetland Conservation § 12.31 On-site wetland identification criteria. (a) Hydric soils. (1) NRCS shall identify hydric soils through the use of published soil maps which reflect soil surveys completed by NRCS or through the use of on-site reviews. If a published soil map is unavailable for a given...

  1. Ecological effects of pipeline construction through deciduous forested wetlands, Midland County, Michigan. Topical report, October 1990--August 1992

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Rastorfer, J.R.; Van Dyke, G.D.; Zellmer, S.D.

    This study is designed to record vegetational changes induced by the construction of a large-diameter gas pipeline through deciduous forested wetlands. Two second-growth wetland sites mapped Lenawee soils were selected in Midland County, Michigan: Site 1, a younger stand subjected to recent selective logging, and Site 2, a more mature stand. The collection of ecological data to analyze plant succession on the right-of-way (ROW) and the effects of the developing ROW plant communities on adjacent forest communities was initiated in 1989. Cover class estimates were made for understory and ROW plant species on the basis of 1 {times} 1{minus}m quadrats.more » Individual stem diameters and species counts were recorded for overstory plants in 10{minus}m quadrats. Although long-term studies have not been completed, firm baseline data were established for comparative analyses with future sampling. Current data indicate that vegetation became well-established on the ROW within one year and subsequently increased in coverage. About 65% of the species were wetland indicators, and the dominants included seeded and natural invading species; nevertheless, some elements of the original flora regenerated and persist. The plants of the ecotone understories of both sites changed from their original composition as a result of the installation of the gas pipeline. Although some forest species persist at both sites, the ecotone of Site I was influenced more by the seeded species, whereas the natural invaders were more important at Site 2.« less

  2. Identifying riparian sinks for watershed nitrate using soil surveys.

    PubMed

    Rosenblatt, A E; Gold, A J; Stolt, M H; Groffman, P M; Kellogg, D Q

    2001-01-01

    The capacity of riparian zones to serve as critical control locations for watershed nitrogen flux varies with site characteristics. Without a means to stratify riparian zones into different levels of ground water nitrate removal capacity, this variability will confound spatially explicit source-sink models of watershed nitrate flux and limit efforts to target riparian restoration and management. We examined the capability of SSURGO (1:15 840 Soil Survey Geographic database) map classifications (slope class, geomorphology, and/or hydric soil designation) to identify riparian sites with high capacity for ground water nitrate removal. The study focused on 100 randomly selected riparian locations in a variety of forested and glaciated settings within Rhode Island. Geomorphic settings included till, outwash, and organic/alluvial deposits. We defined riparian zones with "high ground water nitrate removal capacity" as field sites possessing both >10 m of hydric soil width and an absence of ground water surface seeps. SSURGO classification based on a combination of geomorphology and hydric soil status created two functionally distinct sets of riparian sites. More than 75% of riparian sites classified by SSURGO as organic/alluviumhydric or as outwash-hydric had field attributes that suggest a high capacity for ground water nitrate removal. In contrast, >85% of all till sites and nonhydric outwash sites had field characteristics that minimize the capacity for ground water nitrate removal. Comparing the STATSGO and SSURGO databases for a 64000-ha watershed, STATSGO grossly under-represented critical riparian features. We conclude that the SSURGO database can provide modelers and managers with important insights into riparian zone nitrogen removal potential.

  3. Chromosome segregation drives division site selection in Streptococcus pneumoniae.

    PubMed

    van Raaphorst, Renske; Kjos, Morten; Veening, Jan-Willem

    2017-07-18

    Accurate spatial and temporal positioning of the tubulin-like protein FtsZ is key for proper bacterial cell division. Streptococcus pneumoniae (pneumococcus) is an oval-shaped, symmetrically dividing opportunistic human pathogen lacking the canonical systems for division site control (nucleoid occlusion and the Min-system). Recently, the early division protein MapZ was identified and implicated in pneumococcal division site selection. We show that MapZ is important for proper division plane selection; thus, the question remains as to what drives pneumococcal division site selection. By mapping the cell cycle in detail, we show that directly after replication both chromosomal origin regions localize to the future cell division sites, before FtsZ. Interestingly, Z-ring formation occurs coincidently with initiation of DNA replication. Perturbing the longitudinal chromosomal organization by mutating the condensin SMC, by CRISPR/Cas9-mediated chromosome cutting, or by poisoning DNA decatenation resulted in mistiming of MapZ and FtsZ positioning and subsequent cell elongation. Together, we demonstrate an intimate relationship between DNA replication, chromosome segregation, and division site selection in the pneumococcus, providing a simple way to ensure equally sized daughter cells.

  4. Volume 51, Issue 7-8Copyright © 2003 WILEY-VCH Verlag GmbH & Co. KGaA, WeinheimSave Title to My Profile

    E-MailPrint

    Volume 51, Issue 7-8, Pages 639-896(July 2003)

    Preface

    Preface

    NASA Astrophysics Data System (ADS)

    Andreev, O.

    2003-07-01

    We briefly review a possible scheme for getting the known QCD scaling laws within string theory. In particular, we consider amplitudes for exclusive scattering of hadrons at large momentum transfer and hadronic form factors.

  5. Evaluation of SLAR and thematic mapper MSS data for forest cover mapping using computer-aided analysis techniques

    NASA Technical Reports Server (NTRS)

    Hoffer, R. M. (Principal Investigator)

    1980-01-01

    To facilitate comparison between the four different spatial resolution of the NS-001 MSS data sets, a supervised approach was taken in defining training blocks for each of the different cover types. The training fields representing each cover type category were grouped and this group was clustered to determine the individual spectral classes within each cover type category which would effectively characterize the entire test site. Graphs show the variation in spectral response level with respect to distance in the across track dimension for four sampling intervals. Radar digitization procedures were developd. Flight characteristics and parameters for digitization of radar imagery are tabulated. The statement of work for phase 3 was reviewed and modifications were suggested to meet funding reduction.

  6. Molecular analysis of mercury-resistant Bacillus isolates from sediment of Minamata Bay, Japan.

    PubMed Central

    Nakamura, K; Silver, S

    1994-01-01

    Bacillus isolates from Minamata Bay sediment were selected for the ability to volatilize mercury from a range of organomercurials (including methylmercury). Chromosomal DNA from 74 of 78 such strains hybridized with the mer mercury resistance operon DNA from marine Bacillus sp. strain RC607 (Y. Wang, M. Moore, H. S. Levinson, S. Silver, C. Walsh, and I. Mahler, J. Bacteriol. 171:83-92, 1989). The most frequent classes with regard to restriction nuclease site maps of the mer operon for the new isolates were identical to or closely related to the mer determinant of strain RC607. PCR amplification analysis with primers designed from the strain RC607 mer operon gave products of precisely the predicted size with the 74 Minamata Bay isolates. Images PMID:7811095

  7. Support Vector Machines for Multitemporal and Multisensor Change Detection in a Mining Area

    NASA Astrophysics Data System (ADS)

    Hecheltjen, Antje; Waske, Bjorn; Thonfeld, Frank; Braun, Matthias; Menz, Gunter

    2010-12-01

    Long-term change detection often implies the challenge of incorporating multitemporal data from different sensors. Most of the conventional change detection algorithms are designed for bi-temporal datasets from the same sensors detecting only the existence of changes. The labeling of change areas remains a difficult task. To overcome such drawbacks, much attention has been given lately to algorithms arising from machine learning, such as Support Vector Machines (SVMs). While SVMs have been applied successfully for land cover classifications, the exploitation of this approach for change detection is still in its infancy. Few studies have already proven the applicability of SVMs for bi- and multitemporal change detection using data from one sensor only. In this paper we demonstrate the application of SVM for multitemporal and -sensor change detection. Our study site covers lignite open pit mining areas in the German state North Rhine-Westphalia. The dataset consists of bi-temporal Landsat data and multi-temporal ERS SAR data covering two time slots (2001 and 2009). The SVM is conducted using the IDL program imageSVM. Change is deduced from one time slot to the next resulting in two change maps. In contrast to change detection, which is based on post-classification comparison, change detection is seen here as a specific classification problem. Thus, changes are directly classified from a layer-stack of the two years. To reduce the number of change classes, we created a change mask using the magnitude of Change Vector Analysis (CVA). Training data were selected for different change classes (e.g. forest to mining or mining to agriculture) as well as for the no-change classes (e.g. agriculture). Subsequently, they were divided in two independent sets for training the SVMs and accuracy assessment, respectively. Our study shows the applicability of SVMs to classify changes via SVMs. The proposed method yielded a change map of reclaimed and active mines. The use of ERS SAR data, however, did not add to the accuracy compared to Landsat data only. A great advantage compared to other change detection approaches are the labeled change maps, which are a direct output of the methodology. Our approach also overcomes the drawback of post-classification comparison, namely the propagation of classification inaccuracies.

  8. Coastline Mapping and Cultural Review to Predict Sea Level Rise Impact on Hawaiian Archeological Sites

    NASA Astrophysics Data System (ADS)

    Clinton, J.

    2017-12-01

    Much of Hawaii's history is recorded in archeological sites. Researchers and cultural practitioners have been studying and reconstructing significant archeological sites for generations. Climate change, and more specifically, sea level rise may threaten these sites. Our research records current sea levels and then projects possible consequences to these cultural monuments due to sea level rise. In this mixed methods study, research scientists, cultural practitioners, and secondary students use plane-table mapping techniques to create maps of coastlines and historic sites. Students compare historical records to these maps, analyze current sea level rise trends, and calculate future sea levels. They also gather data through interviews with community experts and kupuna (elders). If climate change continues at projected rates, some historic sites will be in danger of negative impact due to sea level rise. Knowing projected sea levels at specific sites allows for preventative action and contributes to raised awareness of the impacts of climate change to the Hawaiian Islands. Students will share results with the community and governmental agencies in hopes of inspiring action to minimize climate change. It will take collaboration between scientists and cultural communities to inspire future action on climate change.

  9. A comparison between univariate probabilistic and multivariate (logistic regression) methods for landslide susceptibility analysis: the example of the Febbraro valley (Northern Alps, Italy)

    NASA Astrophysics Data System (ADS)

    Rossi, M.; Apuani, T.; Felletti, F.

    2009-04-01

    The aim of this paper is to compare the results of two statistical methods for landslide susceptibility analysis: 1) univariate probabilistic method based on landslide susceptibility index, 2) multivariate method (logistic regression). The study area is the Febbraro valley, located in the central Italian Alps, where different types of metamorphic rocks croup out. On the eastern part of the studied basin a quaternary cover represented by colluvial and secondarily, by glacial deposits, is dominant. In this study 110 earth flows, mainly located toward NE portion of the catchment, were analyzed. They involve only the colluvial deposits and their extension mainly ranges from 36 to 3173 m2. Both statistical methods require to establish a spatial database, in which each landslide is described by several parameters that can be assigned using a main scarp central point of landslide. The spatial database is constructed using a Geographical Information System (GIS). Each landslide is described by several parameters corresponding to the value of main scarp central point of the landslide. Based on bibliographic review a total of 15 predisposing factors were utilized. The width of the intervals, in which the maps of the predisposing factors have to be reclassified, has been defined assuming constant intervals to: elevation (100 m), slope (5 °), solar radiation (0.1 MJ/cm2/year), profile curvature (1.2 1/m), tangential curvature (2.2 1/m), drainage density (0.5), lineament density (0.00126). For the other parameters have been used the results of the probability-probability plots analysis and the statistical indexes of landslides site. In particular slope length (0 ÷ 2, 2 ÷ 5, 5 ÷ 10, 10 ÷ 20, 20 ÷ 35, 35 ÷ 260), accumulation flow (0 ÷ 1, 1 ÷ 2, 2 ÷ 5, 5 ÷ 12, 12 ÷ 60, 60 ÷27265), Topographic Wetness Index 0 ÷ 0.74, 0.74 ÷ 1.94, 1.94 ÷ 2.62, 2.62 ÷ 3.48, 3.48 ÷ 6,00, 6.00 ÷ 9.44), Stream Power Index (0 ÷ 0.64, 0.64 ÷ 1.28, 1.28 ÷ 1.81, 1.81 ÷ 4.20, 4.20 ÷ 9.40). Geological map and land use map were also used, considering geological and land use properties as categorical variables. Appling the univariate probabilistic method the Landslide Susceptibility Index (LSI) is defined as the sum of the ratio Ra/Rb calculated for each predisposing factor, where Ra is the ratio between number of pixel of class and the total number of pixel of the study area, and Rb is the ratio between number of landslides respect to the pixel number of the interval area. From the analysis of the Ra/Rb ratio the relationship between landslide occurrence and predisposing factors were defined. Then the equation of LSI was used in GIS to trace the landslide susceptibility maps. The multivariate method for landslide susceptibility analysis, based on logistic regression, was performed starting from the density maps of the predisposing factors, calculated with the intervals defined above using the equation Rb/Rbtot, where Rbtot is a sum of all Rb values. Using stepwise forward algorithms the logistic regression was performed in two successive steps: first a univariate logistic regression is used to choose the most significant predisposing factors, then the multivariate logistic regression can be performed. The univariate regression highlighted the importance of the following factors: elevation, accumulation flow, drainage density, lineament density, geology and land use. When the multivariate regression was applied the number of controlling factors was reduced neglecting the geological properties. The resulting final susceptibility equation is: P = 1 / (1 + exp-(6.46-22.34*elevation-5.33*accumulation flow-7.99* drainage density-4.47*lineament density-17.31*land use)) and using this equation the susceptibility maps were obtained. To easy compare the results of the two methodologies, the susceptibility maps were reclassified in five susceptibility intervals (very high, high, moderate, low and very low) using natural breaks. Then the maps were validated using two cumulative distribution curves, one related to the landslides (number of landslides in each susceptibility class) and one to the basin (number of pixel covering each class). Comparing the curves for each method, it results that the two approaches (univariate and multivariate) are appropriate, providing acceptable results. In both maps the distribution of high susceptibility condition is mainly localized on the left slope of the catchment in agreement with the field evidences. The comparison between the methods was obtained by subtraction of the two maps. This operation shows that about 40% of the basin is classified by the same class of susceptibility. In general the univariate probabilistic method tends to overestimate the areal extension of the high susceptibility class with respect to the maps obtained by the logistic regression method.

  10. Human HDAC7 Harbors a Class IIa Histone Deacetylase-specific Zinc Binding Motif and Cryptic Deacetylase Activity*S⃞

    PubMed Central

    Schuetz, Anja; Min, Jinrong; Allali-Hassani, Abdellah; Schapira, Matthieu; Shuen, Michael; Loppnau, Peter; Mazitschek, Ralph; Kwiatkowski, Nick P.; Lewis, Timothy A.; Maglathin, Rebecca L.; McLean, Thomas H.; Bochkarev, Alexey; Plotnikov, Alexander N.; Vedadi, Masoud; Arrowsmith, Cheryl H.

    2008-01-01

    Histone deacetylases (HDACs) are protein deacetylases that play a role in repression of gene transcription and are emerging targets in cancer therapy. Here, we characterize the structure and enzymatic activity of the catalytic domain of human HDAC7 (cdHDAC7). Although HDAC7 normally exists as part of a multiprotein complex, we show that cdHDAC7 has a low level of deacetylase activity which can be inhibited by known HDAC inhibitors. The crystal structures of human cdHDAC7 and its complexes with two hydroxamate inhibitors are the first structures of the catalytic domain of class IIa HDACs and demonstrate significant differences with previously reported class I and class IIb-like HDAC structures. We show that cdHDAC7 has an additional class IIa HDAC-specific zinc binding motif adjacent to the active site which is likely to participate in substrate recognition and protein-protein interaction and may provide a site for modulation of activity. Furthermore, a different active site topology results in modified catalytic properties and in an enlarged active site pocket. Our studies provide mechanistic insights into class IIa HDACs and facilitate the design of specific modulators. PMID:18285338

  11. Human HDAC7 harbors a class IIa histone deacetylase-specific zinc binding motif and cryptic deacetylase activity.

    PubMed

    Schuetz, Anja; Min, Jinrong; Allali-Hassani, Abdellah; Schapira, Matthieu; Shuen, Michael; Loppnau, Peter; Mazitschek, Ralph; Kwiatkowski, Nick P; Lewis, Timothy A; Maglathin, Rebecca L; McLean, Thomas H; Bochkarev, Alexey; Plotnikov, Alexander N; Vedadi, Masoud; Arrowsmith, Cheryl H

    2008-04-25

    Histone deacetylases (HDACs) are protein deacetylases that play a role in repression of gene transcription and are emerging targets in cancer therapy. Here, we characterize the structure and enzymatic activity of the catalytic domain of human HDAC7 (cdHDAC7). Although HDAC7 normally exists as part of a multiprotein complex, we show that cdHDAC7 has a low level of deacetylase activity which can be inhibited by known HDAC inhibitors. The crystal structures of human cdHDAC7 and its complexes with two hydroxamate inhibitors are the first structures of the catalytic domain of class IIa HDACs and demonstrate significant differences with previously reported class I and class IIb-like HDAC structures. We show that cdHDAC7 has an additional class IIa HDAC-specific zinc binding motif adjacent to the active site which is likely to participate in substrate recognition and protein-protein interaction and may provide a site for modulation of activity. Furthermore, a different active site topology results in modified catalytic properties and in an enlarged active site pocket. Our studies provide mechanistic insights into class IIa HDACs and facilitate the design of specific modulators.

  12. Combination of statistical and physically based methods to assess shallow slide susceptibility at the basin scale

    NASA Astrophysics Data System (ADS)

    Oliveira, Sérgio C.; Zêzere, José L.; Lajas, Sara; Melo, Raquel

    2017-07-01

    Approaches used to assess shallow slide susceptibility at the basin scale are conceptually different depending on the use of statistical or physically based methods. The former are based on the assumption that the same causes are more likely to produce the same effects, whereas the latter are based on the comparison between forces which tend to promote movement along the slope and the counteracting forces that are resistant to motion. Within this general framework, this work tests two hypotheses: (i) although conceptually and methodologically distinct, the statistical and deterministic methods generate similar shallow slide susceptibility results regarding the model's predictive capacity and spatial agreement; and (ii) the combination of shallow slide susceptibility maps obtained with statistical and physically based methods, for the same study area, generate a more reliable susceptibility model for shallow slide occurrence. These hypotheses were tested at a small test site (13.9 km2) located north of Lisbon (Portugal), using a statistical method (the information value method, IV) and a physically based method (the infinite slope method, IS). The landslide susceptibility maps produced with the statistical and deterministic methods were combined into a new landslide susceptibility map. The latter was based on a set of integration rules defined by the cross tabulation of the susceptibility classes of both maps and analysis of the corresponding contingency tables. The results demonstrate a higher predictive capacity of the new shallow slide susceptibility map, which combines the independent results obtained with statistical and physically based models. Moreover, the combination of the two models allowed the identification of areas where the results of the information value and the infinite slope methods are contradictory. Thus, these areas were classified as uncertain and deserve additional investigation at a more detailed scale.

  13. Modeling plant composition as community continua in a forest landscape with LiDAR and hyperspectral remote sensing.

    PubMed

    Hakkenberg, C R; Peet, R K; Urban, D L; Song, C

    2018-01-01

    In light of the need to operationalize the mapping of forest composition at landscape scales, this study uses multi-scale nested vegetation sampling in conjunction with LiDAR-hyperspectral remotely sensed data from the G-LiHT airborne sensor to map vascular plant compositional turnover in a compositionally and structurally complex North Carolina Piedmont forest. Reflecting a shift in emphasis from remotely sensing individual crowns to detecting aggregate optical-structural properties of forest stands, predictive maps reflect the composition of entire vascular plant communities, inclusive of those species smaller than the resolution of the remotely sensed imagery, intertwined with proximate taxa, or otherwise obscured from optical sensors by dense upper canopies. Stand-scale vascular plant composition is modeled as community continua: where discrete community-unit classes at different compositional resolutions provide interpretable context for continuous gradient maps that depict n-dimensional compositional complexity as a single, consistent RGB color combination. In total, derived remotely sensed predictors explain 71%, 54%, and 48% of the variation in the first three components of vascular plant composition, respectively. Among all remotely sensed environmental gradients, topography derived from LiDAR ground returns, forest structure estimated from LiDAR all returns, and morphological-biochemical traits determined from hyperspectral imagery each significantly correspond to the three primary axes of floristic composition in the study site. Results confirm the complementarity of LiDAR and hyperspectral sensors for modeling the environmental gradients constraining landscape turnover in vascular plant composition and hold promise for predictive mapping applications spanning local land management to global ecosystem modeling. © 2017 by the Ecological Society of America.

  14. Landslide susceptibility map: from research to application

    NASA Astrophysics Data System (ADS)

    Fiorucci, Federica; Reichenbach, Paola; Ardizzone, Francesca; Rossi, Mauro; Felicioni, Giulia; Antonini, Guendalina

    2014-05-01

    Susceptibility map is an important and essential tool in environmental planning, to evaluate landslide hazard and risk and for a correct and responsible management of the territory. Landslide susceptibility is the likelihood of a landslide occurring in an area on the basis of local terrain conditions. Can be expressed as the probability that any given region will be affected by landslides, i.e. an estimate of "where" landslides are likely to occur. In this work we present two examples of landslide susceptibility map prepared for the Umbria Region and for the Perugia Municipality. These two maps were realized following official request from the Regional and Municipal government to the Research Institute for the Hydrogeological Protection (CNR-IRPI). The susceptibility map prepared for the Umbria Region represents the development of previous agreements focused to prepare: i) a landslide inventory map that was included in the Urban Territorial Planning (PUT) and ii) a series of maps for the Regional Plan for Multi-risk Prevention. The activities carried out for the Umbria Region were focused to define and apply methods and techniques for landslide susceptibility zonation. Susceptibility maps were prepared exploiting a multivariate statistical model (linear discriminant analysis) for the five Civil Protection Alert Zones defined in the regional territory. The five resulting maps were tested and validated using the spatial distribution of recent landslide events that occurred in the region. The susceptibility map for the Perugia Municipality was prepared to be integrated as one of the cartographic product in the Municipal development plan (PRG - Piano Regolatore Generale) as required by the existing legislation. At strategic level, one of the main objectives of the PRG, is to establish a framework of knowledge and legal aspects for the management of geo-hydrological risk. At national level most of the susceptibility maps prepared for the PRG, were and still are obtained qualitatively classifying the territory according to slope classes. For the Perugia Municipality the susceptibility map was obtained combining results of statistical multivariate models and landslide density map. In particular, in the first phase a susceptibility zonation was prepared using different single and combined probability statistical multivariate techniques. The zonation was then combined and compared with the landslide density map in order to reclassify the false negative (portion of the territory classified by the model as stable affected by slope failures). The semi-quantitative resulting map was classified in five susceptibility classes. For each class a set of technical regulation was established to manage the territory.

  15. Mapping of a disease susceptibility locus in chromosome 6p in Japanese patients with ulcerative colitis.

    PubMed

    Nomura, E; Kinouchi, Y; Negoro, K; Kojima, Y; Oomori, S; Sugimura, M; Hiroki, M; Takagi, S; Aihara, H; Takahashi, S; Hiwatashi, N; Shimosegawa, T

    2004-09-01

    Ulcerative colitis (UC) is a multifactorial disorder with both genetic and environmental factors. HLA-B*52 and DRB1*1502 are reported to be strongly associated with UC in Japan. However, the actual susceptible gene has not been identified yet. In this study, to map precisely the susceptible locus for UC, we performed association mapping in the chromosome 6p using 24 microsatellite markers distributed over 16 Mb. A total of 183 patients with UC and 186 healthy controls (HC) were included in this study. In all, 15 markers around the human leukocyte antigen (HLA) region showed statistical significance in the genotypic differentiation test concerned with the allelic distribution between the UC and HC. Especially, the markers between the centromeric region of HLA class I and the telomeric region of class III showed remarkably low P-values and the allele239 of C2-4-4 in class I marker showed the strongest association (Pc=2.9 x 10(-9): OR=3.74, 95% CI=2.50-5.60). Furthermore, we found strong linkage disequilibrium (LD) between the allele239 of C2-4-4 and HLA-B*52 in haplotype analysis. These results provide evidence that, in Japanese, important determinants of disease susceptibility to UC may exist in HLA, especially between the centromeric region of class I and the telomeric region of class III, under the strong LD with HLA-B*52.

  16. Histocompatibility antigen test

    MedlinePlus

    ... MedlinePlus GO GO About MedlinePlus Site Map FAQs Customer Support Health Topics Drugs & Supplements Videos & Tools Español ... ADAM Health Solutions. About MedlinePlus Site Map FAQs Customer Support Get email updates Subscribe to RSS Follow ...

  17. Stress and your heart

    MedlinePlus

    ... MedlinePlus GO GO About MedlinePlus Site Map FAQs Customer Support Health Topics Drugs & Supplements Videos & Tools Español ... ADAM Health Solutions. About MedlinePlus Site Map FAQs Customer Support Get email updates Subscribe to RSS Follow ...

  18. Premenstrual dysphoric disorder

    MedlinePlus

    ... MedlinePlus GO GO About MedlinePlus Site Map FAQs Customer Support Health Topics Drugs & Supplements Videos & Tools Español ... ADAM Health Solutions. About MedlinePlus Site Map FAQs Customer Support Get email updates Subscribe to RSS Follow ...

  19. Learn to manage stress

    MedlinePlus

    ... MedlinePlus GO GO About MedlinePlus Site Map FAQs Customer Support Health Topics Drugs & Supplements Videos & Tools Español ... ADAM Health Solutions. About MedlinePlus Site Map FAQs Customer Support Get email updates Subscribe to RSS Follow ...

  20. Site plan, map, and statement of significance Promontory Route ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Site plan, map, and statement of significance - Promontory Route Railroad Trestles, S.P. Trestle 779.91, One mile southwest of junction of State Highway 83 and Blue Creek, Corinne, Box Elder County, UT

Top