Tree Ring Chronology Indexes and Reconstructions of Precipitation in Central Iowa, USA (1984) (NDP-002)

DOE Data Explorer

Blasing, T. J. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Duvick, D. N. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Building Technologies Research and Integration Center (BTRIC)

2012-01-01

Tree core samples (4 mm in diameter) were extracted from the trunks of white oak (Quercus alba) at three sites in central Iowa (Duvick Back Woods, Ledges State Park, and Pammel). At least 60 trees were sampled at each site, and at least two cores were taken from each tree. The growth rings of each core were dated by calendar year and measured; the measurements were then transformed into dimensionless ring-width indices and correlated with annual precipitation. Data were collected for the years 1680 through 1979. Each tree ring was characterized by the site, year, tree-ring-width index, number of core samples, decade year, and the annual reconstructed precipitation estimate. These data have more than 50% of their variance in common with the known annual statewide average precipitation for Iowa and serve as useful indicators of the precipitation and drought history of the region for the past 300 years. The data are in two files: tree-ring-chronology data (8 kB) and the annual reconstructed precipitation data for central Iowa (2 kB).

Application of phytoscreening to three hazardous waste sites in Arizona.

PubMed

Duncan, Candice M; Mainhagu, Jon; Virgone, Kayla; Ramírez, Denise Moreno; Brusseau, Mark L

2017-12-31

The great majority of prior phytoscreening applications have been conducted in humid and temperate environments wherein groundwater is relatively shallow (~1-6m deep). The objective of this research is to evaluate its use in semi-arid environments for sites with deeper groundwater (>10m). To that end, phytoscreening is applied to three chlorinated-solvent hazardous-waste sites in Arizona. Contaminant concentrations were quantifiable in tree-tissue samples collected from two of the sites (Nogales, Park-Euclid). Contaminant concentrations were detectable, but not quantifiable, for the third site. Tree-tissue concentrations of tetrachloroethene (PCE) ranged from approximately 400-5000ug/kg wet weight for burrobrush, cottonwood, palo verde, and velvet mesquite at the Nogales site. In addition to standard trunk-core samples, leaf samples were collected to test the effectiveness of a less invasive sampling method. Leaf-sample concentrations were quantifiable, but several times lower than the corresponding core-sample concentrations. Comparison of results obtained for the test sites to those reported in the literature suggest that tree species is a major factor mediating observed results. One constraint faced for the Arizona sites was the relative scarcity of mature trees available for sampling, particularly in areas adjacent to industrial zones. The results of this study illustrate that phytoscreening can be used effectively to characterize the presence of groundwater contamination for semi-arid sites with deeper groundwater. Copyright © 2017 Elsevier B.V. All rights reserved.

Real-Time and Delayed Analysis of Tree and Shrub Cores as Indicators of Subsurface Volatile Organic Compound Contamination, Durham Meadows Superfund Site, Durham, Connecticut, August 29, 2006

USGS Publications Warehouse

Vroblesky, Don A.; Willey, Richard E.; Clifford, Scott; Murphy, James J.

2008-01-01

This study examined volatile organic compound concentrations in cores from trees and shrubs for use as indicators of vadose-zone contamination or potential vapor intrusion by volatile organic compounds into buildings at the Durham Meadows Superfund Site, Durham, Connecticut. The study used both (1) real-time tree- and shrub-core analysis, which involved field heating the core samples for 5 to 10 minutes prior to field analysis, and (2) delayed analysis, which involved allowing the gases in the cores to equilibrate with the headspace gas in the sample vials unheated for 1 to 2 days prior to analysis. General correspondence was found between the two approaches, indicating that preheating and field analysis of vegetation cores is a viable approach to real-time monitoring of subsurface volatile organic compounds. In most cases, volatile organic compounds in cores from trees and shrubs at the Merriam Manufacturing Company property showed a general correspondence to the distribution of volatile organic compounds detected in a soil-gas survey, despite the fact that most of the soil-gas survey data in close proximity to the relevant trees were collected about 3 years prior to the tree-core collection. Most of the trees cored at the Durham Meadows Superfund Site, outside of the Merriam Manufacturing Company property, contained no volatile organic compounds and were in areas where indoor air sampling and soil-gas sampling showed little or no volatile organic compound concentrations. An exception was tree DM11, which contained barely detectable concentrations of trichloroethene near a house where previous investigations found low concentrations of trichloroethene (0.13 to 1.2 parts per billion by volume) in indoor air and 7.7 micrograms per liter of trichloroethene in the ground water. The barely detectable concentration of trichloroethene in tree DM11 and the lack of volatile organic compound detection in nearby tree DM10 (adjacent to the well having 7.7 micrograms of trichloroethene) may be attributable to the relatively large depth to water (17.6 feet), the relatively low soil-vapor trichloroethene concentration, and the large amount of rainfall during and preceding the tree-coring event. The data indicate that real-time and delayed analyses of tree cores are viable approaches to examining subsurface volatile organic compound soil-gas or vadose-zone contamination at the Durham Meadows Superfund Site and other similar sites. Thus, the methods may have application for determining the potential for vapor intrusion into buildings.

Study of lime vs. no lime in cold in-place recycled asphalt concrete pavements : final report.

DOT National Transportation Integrated Search

1991-09-01

The resilient characteristics of cold in-place recycled asphalt concrete with and without lime were examined. Six core samples were obtained from a site two months after construction; six months later, six additional core samples were obtained from t...

Dechlorane plus, a chlorinated flame retardant, in the Great Lakes.

PubMed

Hoh, Eunha; Zhu, Lingyan; Hites, Ronald A

2006-02-15

A highly chlorinated flame retardant, Dechlorane Plus (DP), was detected and identified in ambient air, fish, and sediment samples from the Great Lakes region. The identity of this compound was confirmed by comparing its gas chromatographic retention times and mass spectra with those of authentic material. This compound exists as two gas chromatographically separable stereoisomers (syn and anti), the structures of which were characterized by one- and two-dimensional proton nuclear magnetic resonance. DP was detected in most air samples, even at remote sites. The atmospheric DP concentrations were higher at the eastern Great Lakes sites (Sturgeon Point, NY, and Cleveland, OH) than those at the western Great Lakes sites (Eagle Harbor, MI, Chicago, IL, and Sleeping Bear Dunes, MI). Atthe Sturgeon Point site, DP concentrations once reached 490 pg/m3. DP atmospheric concentrations were comparable to those of BDE-209 at the eastern Great Lakes sites. DP was also found in sediment cores from Lakes Michigan and Erie. The peak DP concentrations were comparable to BDE-209 concentrations in the sediment core from Lake Erie butwere about 30 times lower than BDE-209 concentrations in the core from Lake Michigan. In the sediment cores, the DP concentrations peaked around 1975-1980, and the surficial concentrations were 10-80% of peak concentrations. Higher DP concentrations in air samples from Sturgeon Point, NY, and in the sediment core from Lake Erie suggest that DP's manufacturing facility in Niagara Falls, NY, may be a source. DP was also detected in archived fish (walleye) from Lake Erie, suggesting that this compound is, at least partially, bioavailable.

Large-scale identification of core-fucosylated glycopeptide sites in pancreatic cancer serum using mass spectrometry.

PubMed

Tan, Zhijing; Yin, Haidi; Nie, Song; Lin, Zhenxin; Zhu, Jianhui; Ruffin, Mack T; Anderson, Michelle A; Simeone, Diane M; Lubman, David M

2015-04-03

Glycosylation has significant effects on protein function and cell metastasis, which are important in cancer progression. It is of great interest to identify site-specific glycosylation in search of potential cancer biomarkers. However, the abundance of glycopeptides is low compared to that of nonglycopeptides after trypsin digestion of serum samples, and the mass spectrometric signals of glycopeptides are often masked by coeluting nonglycopeptides due to low ionization efficiency. Selective enrichment of glycopeptides from complex serum samples is essential for mass spectrometry (MS)-based analysis. Herein, a strategy has been optimized using LCA enrichment to improve the identification of core-fucosylation (CF) sites in serum of pancreatic cancer patients. The optimized strategy was then applied to analyze CF glycopeptide sites in 13 sets of serum samples from pancreatic cancer, chronic pancreatitis, healthy controls, and a standard reference. In total, 630 core-fucosylation sites were identified from 322 CF proteins in pancreatic cancer patient serum using an Orbitrap Elite mass spectrometer. Further data analysis revealed that 8 CF peptides exhibited a significant difference between pancreatic cancer and other controls, which may be potential diagnostic biomarkers for pancreatic cancer.

Application of Phytoscreening to Three Hazardous Waste Sites in Arizona

NASA Astrophysics Data System (ADS)

Duncan, C.

2017-12-01

The great majority of prior phytoscreening applications have been conducted in humid and temperate environments wherein groundwater is relatively shallow ( 1-6m deep). The objective of this research is to evaluate its use in semi-arid environments for sites with deeper groundwater (>10 m). To that end, phytoscreening is applied to three chlorinated-solvent hazardous-waste sites in Arizona. Contaminant concentrations were quantifiable in tree-tissue samples collected from two of the sites (Nogales, Park-Euclid). Contaminant concentrations were detectable, but not quantifiable, for the third site. Tree-tissue concentrations of tetrachloroethene (PCE) ranged from approximately 400-5000 ug/kg wet weight for burrobrush, cottonwood, palo verde, and velvet mesquite at the Nogales site. In addition to standard trunk-core samples, leaf samples were collected to test the effectiveness of a less invasive sampling method. Leaf-sample concentrations were quantifiable, but several times lower than the corresponding core-sample concentrations. Comparison of results obtained for the test sites to those reported in the literature suggest that tree species is amajor factormediating observed results. One constraint faced for the Arizona siteswas the relative scarcity of mature trees available for sampling, particularly in areas adjacent to industrial zones. The results of this study illustrate that phytoscreening can be used effectively to characterize the presence of groundwater contamination for semi-arid sites with deeper groundwater.

Sampling for Soil Carbon Stock Assessment in Rocky Agricultural Soils

NASA Technical Reports Server (NTRS)

Beem-Miller, Jeffrey P.; Kong, Angela Y. Y.; Ogle, Stephen; Wolfe, David

2016-01-01

Coring methods commonly employed in soil organic C (SOC) stock assessment may not accurately capture soil rock fragment (RF) content or soil bulk density (rho (sub b)) in rocky agricultural soils, potentially biasing SOC stock estimates. Quantitative pits are considered less biased than coring methods but are invasive and often cost-prohibitive. We compared fixed-depth and mass-based estimates of SOC stocks (0.3-meters depth) for hammer, hydraulic push, and rotary coring methods relative to quantitative pits at four agricultural sites ranging in RF content from less than 0.01 to 0.24 cubic meters per cubic meter. Sampling costs were also compared. Coring methods significantly underestimated RF content at all rocky sites, but significant differences (p is less than 0.05) in SOC stocks between pits and corers were only found with the hammer method using the fixed-depth approach at the less than 0.01 cubic meters per cubic meter RF site (pit, 5.80 kilograms C per square meter; hammer, 4.74 kilograms C per square meter) and at the 0.14 cubic meters per cubic meter RF site (pit, 8.81 kilograms C per square meter; hammer, 6.71 kilograms C per square meter). The hammer corer also underestimated rho (sub b) at all sites as did the hydraulic push corer at the 0.21 cubic meters per cubic meter RF site. No significant differences in mass-based SOC stock estimates were observed between pits and corers. Our results indicate that (i) calculating SOC stocks on a mass basis can overcome biases in RF and rho (sub b) estimates introduced by sampling equipment and (ii) a quantitative pit is the optimal sampling method for establishing reference soil masses, followed by rotary and then hydraulic push corers.

Coccolith and silicoflagellate stratigraphy, northern mid-Atlantic Ridge and Reykjanes Ridge, Deep Sea Drilling Project Leg 49

USGS Publications Warehouse

Bukry, David

1979-01-01

Leg 49 of the Deep Sea Drilling Project recovered 192 cores at eight drilling sites, 407 through 414 (Figure 1). Light-microscope techniques were used to study the cocoliths, silicoflagellates, and sponge spicules of 120 samples from these cores. The cocolith zonation of the samples follows Bukry (1975a), and is summarized in Figure 2. Silicoflagellate zonation, summarized in Figure 3, is explained in the text. Siliceous sponge spicules are common in many samples and are briefly discussed and illustrated. One new silicoflagellate, Distephanus sulcatus, from the Plicene of Site 407, is described.

Description, dissection, and subsampling of Apollo 14 core sample 14230

NASA Technical Reports Server (NTRS)

Fryxell, R.; Heiken, G.

1971-01-01

Core sample 14230, collected at Triplet Crater near the Fra Mauro landing site of the Apollo 14 mission, was dissected in greater detail than any previous core. Sediment from the actual lunar surface was missing, and 6.7 grams of sediment were removed from the base of the core for a portion of the biotest prime sample. Upper and lower portions of the original 70.7-gram core (12.5 centimeters long) were fractured excessively but not mixed stratigraphically. Three major morphologic units and 11 subdivisions were recognized. Dissection provided 55 subsamples in addition to three others made by removing longitudinal sections of the core impregnated with n-butyl methacrylate for use as a permanent documentary record and for studies requiring particles of known orientation.

Results of the Chemical and Isotopic Analyses of Sediment and Ground Water from Alluvium of the Canadian River Near a Closed Municipal Landfill, Norman, Oklahoma, Part 2

USGS Publications Warehouse

Breit, George N.; Tuttle, Michele L.W.; Cozzarelli, Isabelle M.; Berry, Cyrus J.; Christenson, Scott C.; Jaeschke, Jeanne B.

2008-01-01

Analytical results on sediment and associated ground water from the Canadian River alluvium collected subsequent to those described in Breit and others (2005) are presented in this report. The data presented herein were collected primarily to evaluate the iron and sulfur species within the sediment at well sites IC 36, IC 54, and IC South located at the USGS Norman Landfill study site. Cored sediment and water samples were collected during October 2004 and April 2005. The 52 sediment samples collected by coring were analyzed to determine grain size, the abundance of extractable iron species, and the abundance of sulfur forms and their isotopic compositions. Ground water was collected from cluster wells that sampled ground water from 11 to 15 screened intervals at each of the three sites. The depth range of the wells overlapped the interval of cored sediment. Concentrations of major ions, dissolved organic carbon (DOC), ammonium, and iron are reported with pH, specific conductance, and the isotopic composition of the water for the 75 water samples analyzed. Dissolved sulfate in selected water samples was analyzed to determine its sulfur and oxygen isotope composition.

Quantitative x-ray diffraction mineralogy of Los Angeles basin core samples

USGS Publications Warehouse

Hein, James R.; McIntyre, Brandie R.; Edwards, Brian D.; Lakota, Orion I.

2006-01-01

This report contains X-ray diffraction (XRD) analysis of mineralogy for 81 sediment samples from cores taken from three drill holes in the Los Angeles Basin in 2000-2001. We analyzed 26 samples from Pier F core, 29 from Pier C core, and 26 from the Webster core. These three sites provide an offshore-onshore record across the Southern California coastal zone. This report is designed to be a data repository; these data will be used in further studies, including geochemical modeling as part of the CABRILLO project. Summary tables quantify the major mineral groups, whereas detailed mineralogy is presented in three appendices. The rationale, methodology, and techniques are described in the following paper.

a Mineralogical Analysis of Hspdp Core Samples from the Northern Awash Pliocene Hadar Formation, Ethiopia: the tale of AN East African Paleolake

NASA Astrophysics Data System (ADS)

Davis, D. M.; Deocampo, D.; Rabideaux, N. M.; Campisano, C. J.

2017-12-01

The Northern Awash Valley is located in the southwestern portion of the Afar Depression in Ethiopia. During the 2014 field season, two core sites were drilled as part of the Hominin Sites and Paleolakes Drilling Project (HSPDP), recovering a total of 600 m of sediment from both localities (NAO and NAW). Mineralogical analyses of the bulk sediments and clays from the Hadar Formation have helped to begin constructing a more complete picture of the paleoenvironmental conditions of the Northern Awash during the Pliocene. This work is an attempt to begin to answer the questions about salinity/alkalinity of Hadar Paleolake as well as its sulfur content. The two sites, NAW and NAO, are about 3 kilometers apart and presumably part of the same paleolake basin. The data has shown that this area was much more humid during the Pliocene than it is today and that most of the minerals in the paleolake basin are detrital, save for calcite, Mg-calcite, gypsum, pyrite, and a few zeolites. 060 analyses of the clays in the cores show that the lake was a freshwater lake three million years ago, up until its eventual evaporation. Interestingly, the lack of trioctahedral clays is an indication that the lake water did not become highly saline and alkaline during its evaporation. An interesting contrast between the two cores shows that NAO contains gypsum, but so far, no pyrite. NAW, on the other hand, contains both pyrite and gypsum. The pyrite in NAW is mostly at the bottom of the core, whereas, the gypsum is intermittent throughout the core and much more sparse toward the bottom. This line of evidence suggests that the two sites within the lake may have experienced different redox conditions. It may be that the NAO core was sampled in a shallower part of the lake whereas the NAW core sampled a deeper section.

Grain Size Biasing of 230Th-derived Focusing Factors in the Panama Basin

NASA Astrophysics Data System (ADS)

Loveley, M. R.; Marcantonio, F.; Lyle, M. W.; Ibrahim, R.; Wang, J. K.; Hertzberg, J. E.

2014-12-01

In this study, we attempt to understand how differing grain size classes in Panama Basin sediments may create biasing of 230Th as a constant-flux proxy. Greater amounts of 230Th are contained in fine grained particles, which, if fractionated from coarser grained counterparts may lead to biasing of 230Th-derived mass accumulation rates (MARs) and sediment focusing factors. We examined sediments that span the past 25 kyr from four new sediment cores retrieved from two different localities close to the ridges that bound the Panama Basin. Each locality contained paired sites that were seismically interpreted to have undergone sediment redistribution, i.e., thick focused sites versus thin winnowed sites. Two sediment cores were retrieved from the northern part of the Panama basin, Cocos Ridge, (MV1014-01-"4JC", 5° 44.7'N 85° 45.5' W, 1730 m depth; MV1014-01-"8JC", 6° 14.0'N 86° 2.6' W, 1993 m depth), and two were retrieved from the southern part of the basin, Carnegie Ridge, (MV1014-02-"11JC", 0° 41.6'S 85° 20.0' W, 2452 m depth; MV1014-02-"17JC" 0° 10.8'S 85° 52.0' W, 2846 m depth). Cores 4JC and 11JC lie closer to the ridge tops of the Cocos and Carnegie Ridges, respectively, and have thin sediment drapes, while deeper cores, 8JC (Cocos) and 17JC (Carnegie), have thicker sediment drapes and lie downslope from the ridge top cores. Age-model-derived sand MARs, which likely represent the vertical rain of particles that cannot be transported by bottom currents, are similar at each of the paired sites in Holocene and glacial time slices. However, 230Th-normalized MARs are about 50% lower, on average at each of the paired sites during the same time slices. Both Holocene and glacial samples from "thin" cores (4,11JC) contain, surprisingly, significant amounts (up to 50%) of the 230Th within the coarse grained (>63 μm) fraction which makes up 40-70% of the bulk samples analyzed. On the contrary, Holocene and glacial samples from "thick" cores, (8,17JC), contain the greatest amounts of 230Th (up to 49%) in the finest grain-sized fraction (<4μm), which makes up 26-40% of the bulk samples analyzed. Although, redistribution of sediment has taken place, our analysis indicates that 230Th-derived focusing factors are being overestimated at thick sites and underestimated at thin sites.

Sequence polymorphism at the human apolipoprotein AII gene ( APOA2): unexpected deficit of variation in an African-American sample.

PubMed

Fullerton, Stephanie M; Clark, Andrew G; Weiss, Kenneth M; Taylor, Scott L; Stengård, Jari H; Salomaa, Veikko; Boerwinkle, Eric; Nickerson, Deborah A

2002-07-01

A 3.3-kb region, encompassing the APOA2 gene and 2 kb of 5' and 3' flanking DNA, was re-sequenced in a "core" sample of 24 individuals, sampled without regard to the health from each of three populations: African-Americans from Jackson (Miss., USA), Europeans from North Karelia (Finland), and non-Hispanic European-Americans from Rochester, (Minn., USA). Fifteen variable sites were identified (14 SNPs and one multi-allelic microsatellite, all silent), and these sites segregated as 18 sequence haplotypes (or nine, if SNPs only are considered). The haplotype distribution in the core African-American sample was unusual, with a deficit of particular haplotypes compared with those found in the other two samples, and a significantly (P<0.05) low level of nucleotide diversity relative to patterns of polymorphism and divergence at other human loci. Six of the 14 SNPs, whose variation captured the haplotype structure of the core data, were then genotyped by oligonucleotide ligation assay in an additional 2183 individuals from the same three populations (n=843, n=452, and n=888, respectively). All six sites varied in each of the larger "epidemiological" samples, and together, they defined 19 SNP haplotypes, seven with relative frequencies greater than 1% in the total sample; all of these common haplotypes had been identified earlier in the core re-sequencing survey. Here also, the African-American sample showed significantly lower SNP heterozygosity and haplotype diversity than the other two samples. The deficit of polymorphism is consistent with a population-specific non-neutral increase in the relative frequency of several haplotypes in Jackson.

IMPACT OF OIL PRODUCTION RELEASES ON SOME SOIL CHEMICAL PROPERTIES AT THE OSPER SITES

EPA Science Inventory

Surface and soil core samples were collected at two field sites in an old oil production area near Skiatook Lake in Oklahoma. The soil samples were analyzed for nitrates, organic matter, total petroleum hydrocarbons, conductivity, chlorides and dehydrogenase activity. Low level...

Historic CH4 Records from Antarctic and Greenland Ice Cores, Antarctic Firn Data, and Archived Air Samples from Cape Grim, Tasmania

DOE Data Explorer

Etheridge, D. M. [Division of Atmospheric Research, CSIRO, Aspendale, Victoria, Australia; Steele, L. P. [Division of Atmospheric Research, CSIRO, Aspendale, Victoria, Australia; Francey, R. J. [Division of Atmospheric Research, CSIRO, Aspendale, Victoria, Australia; Langenfelds, R. L. [Division of Atmospheric Research, CSIRO, Aspendale, Victoria, Australia

2002-01-01

The Antarctic CH4 records presented here are derived from three ice cores obtained at Law Dome, East Antarctica (66°44'S, 112°50'E, 1390 meters above mean sea level). Law Dome has many qualities of an ideal ice core site for the reconstruction of past concentrations of atmospheric gases; these qualities include: negligible melting of the ice sheet surface, low concentrations of impurities, regular stratigraphic layering undisturbed by wind stress at the surface or differential ice flow at depth, and a high snow accumulation rate. Further details on the site, drilling, and cores are provided by Etheridge et al. (1998), Etheridge et al. (1996), Etheridge and Wookey (1989), and Morgan et al. (1997). The two Greenland ice cores are from the Summit region (72°34' N, 37°37' W, 3200 meters above mean sea level). Lower snow accumulation rate there results in lower air-age resolution, and measurements presented here cover only the pre-industrial period (until 1885). More details about these measurements are presented in Etheridge et al. (1998). Additionally, this site contains firn data from Core DE08-2, and archived air samples from Cape Grim, Tasmania, for comparison.

Changes in Black Carbon Deposition to Antarctica from Two Ice Core Records, A.D. 1850-2000

NASA Technical Reports Server (NTRS)

Bisiaux, Marion M.; Edward, Ross; McConnell, Joseph R.; Curran, Mark A. J.; VanOmmen, Tas D.; Smith, Andrew M.; Neumann, Thomas A.; Pasteris, Daniel R.; Penner, Joyce E.; Taylor, Kendrick

2012-01-01

Continuous flow analysis was based on a steady sample flow and in-line detection of BC and other chemical substances as described in McConnell et al. (2007). In the cold room, previously cut one meter ice core sticks of 3x3cm, are melted continuously on a heated melter head specifically designed to eliminate contamination from the atmosphere or by the external parts of the ice. The melted ice from the most inner part of the ice stick is continuously pumped by a peristaltic pump and carried to a clean lab by Teflon lines. The recorded signal is continuous, integrating a sample volume of about 0.05 mL, for which the temporal resolution depends on the speed of melting, ice density and snow accumulation rate at the ice core drilling site. For annual accumulation derived from the WAIS and Law Dome ice cores, we assumed 3.1 cm water equivalent uncertainty in each year's accumulation from short scale spatial variability (glaciological noise) which was determined from several measurements of annual accumulation in multiple parallel ice cores notably from the WAIS Divide ice core site (Banta et al., 2008) and from South Pole site (McConnell et al., 1997; McConnell et al., 2000). Refractory black carbon (rBC) concentrations were determined using the same method as in (Bisiaux et al., 2011) and adapted to continuous flow measurements as described by (McConnell et al., 2007). The technique uses a single particle intracavity laser induced incandescence photometer (SP2, Droplet Measurement Technologies, Boulder, Colorado) coupled to an ultrasonic nebulizer/desolvation (CETAC UT5000) Flow Injection Analysis (FIA). All analyses, sample preparation etc, were performed in a class 100 cleanroom using anti contamination "clean techniques". The samples were not acidified.

Anisotropy of magnetic susceptibility used to detect coring-induced sediment disturbance and filter palaeomagnetic secular variation data: IODP sites M0061 and M0062 (Baltic Sea)

NASA Astrophysics Data System (ADS)

Snowball, Ian; Almqvist, Bjarne; Lougheed, Bryan; Svensson, Anna; Wiers, Steffen; Herrero-Bervera, Emilio

2017-04-01

Inspired by palaeomagnetic data obtained from two sites (M0061 and M0062) cored during IODP Expedition 347 - Baltic Sea Paleoenvironment we studied the Hemsön Alloformation, which is a series of brackish water muds consisting of horizontal planar and parallel laminated (varved) silty clays free from bioturbation. We determined the anisotropy of magnetic susceptibility (AMS) and characteristic remanence (ChRM) directions of a total of 1,102 discrete samples cut from (i) IODP cores recovered by an Advanced Piston corer and (ii) a series of six sediment cores recovered from the same sites by a Kullenberg piston corer. Systematic core splitting, sub-sampling methods and measurements were applied to all sub-samples. We experimentally tested for field-impressed AMS of these muds, in which titanomagnetite carries magnetic remanence and this test was negative. The AMS is likely determined by paramagnetic minerals. As expected for horizontally bedded sediments, the vast majority of the K1 (maximum) and K2 (intermediate) axes had inclinations close to 0 degrees and the AMS shape parameter (T) indicates an oblate fabric. The declinations of the K1 and K2 directions of the sub-samples taken from Kullenberg cores showed a wide distribution around the bedding plane, with no preferred alignment along any specimen axis. Exceptions are samples from the upper 1.5 m of some of these cores, in which the K1 and K2 directions were vertical, the K3 (minimum) axis shallow and T became prolate. We conclude that the Kullenberg corer, which penetrated the top sediments with a pressure of approximately 15 bar, occasionally under-sampled during penetration and vertically stretched the top sediments. Sub-samples from the upper sections of Kullenberg cores had relatively steep ChRM inclinations and we rejected samples that had a prolate, vertically oriented AMS ellipsoid. Surprisingly, the declinations of the K1 axis of all sub-samples taken from IODP APC core sections, which were not oriented relative to each other with respect to azimuth, clustered tightly within the 90-270 degree specimen axis (K2 is within the 0-180 degree axis). This axis is the direction across each cores' split surface (i.e. perpendicular to the "push" direction of the sub-sampling boxes). The APC cores were characterized by various degrees of downwards bending of the planar varves towards the inner surface of the core liner. We conclude that the initial hydraulic pressure applied by the APC, which was consistently above 50 bar during Expedition 347, was needlessly high and created a conical sediment structure and the distinct alignment of the magnetic susceptibility axes along specimen axes. APC core sections with marked disturbances were characterized by ChRM inclinations below 65 degrees, which is a lower limit predicted by time varying geomagnetic field models for the duration of the Hemsö Alloformation (the most recent 6000 years). We rejected samples for palaeomagnetic purposes if the K1 inclination was steeper than 10 degrees. Our study highlights the added value of measuring AMS of discrete sub-samples as an independent control of the suitability of sediments as a source of palaeomagnetic data.

Seagrass morphometrics at species level in Moreton Bay, Australia from 2012 to 2013.

PubMed

Samper-Villarreal, Jimena; Roelfsema, Chris; Kovacs, Eva M; Adi, Novi S; Lyons, Mitchell; Mumby, Peter J; Lovelock, Catherine E; Saunders, Megan I; Phinn, Stuart R

2017-05-09

Seagrass above, below and total biomass, density and leaf area, length and width were quantified at a species level for 122 sites over three sampling periods in Moreton Bay, Australia. Core samples were collected in two regions: (1) a high water quality region with varying species assemblages and canopy complexity (98 sites); and (2) along a turbidity gradient in the bay (24 sites within four locations). Core samples were collected using a 15 cm diameter×20 cm long corer. Seagrass dry biomass per component was quantified per species present in each sample. A total of 220 biomass and density data records are included, 130 from the high water quality region and 90 from the turbidity gradient. These data provide a detailed assessment of biomass, density and leaf metrics per species sampled from Moreton Bay over 2012-2013. In future, these can be used as a baseline to assess seasonal and spatial variation within the bay, within the region and among regions.

Seagrass morphometrics at species level in Moreton Bay, Australia from 2012 to 2013

PubMed Central

Samper-Villarreal, Jimena; Roelfsema, Chris; Kovacs, Eva M.; Adi, Novi S.; Lyons, Mitchell; Mumby, Peter J.; Lovelock, Catherine E.; Saunders, Megan I.; Phinn, Stuart R.

2017-01-01

Seagrass above, below and total biomass, density and leaf area, length and width were quantified at a species level for 122 sites over three sampling periods in Moreton Bay, Australia. Core samples were collected in two regions: (1) a high water quality region with varying species assemblages and canopy complexity (98 sites); and (2) along a turbidity gradient in the bay (24 sites within four locations). Core samples were collected using a 15 cm diameter×20 cm long corer. Seagrass dry biomass per component was quantified per species present in each sample. A total of 220 biomass and density data records are included, 130 from the high water quality region and 90 from the turbidity gradient. These data provide a detailed assessment of biomass, density and leaf metrics per species sampled from Moreton Bay over 2012–2013. In future, these can be used as a baseline to assess seasonal and spatial variation within the bay, within the region and among regions. PMID:28485717

Carbon Turnover in Organic Soils of Central Saskatchewan: Insights From a Core-Based Decomposition Study

NASA Astrophysics Data System (ADS)

Bauer, I. E.; Bhatti, J. S.; Hurdle, P. A.

2004-05-01

Field-based decomposition studies that examine several site types tend to use one of two approaches: Either the decay of one (or more) standard litters is examined in all sites, or litters native to each site type are incubated in the environment they came from. The first of these approaches examines effects of environment on decay, whereas the latter determines rates of mass loss characteristic of each site type. Both methods are usually restricted to a limited number of litters, and neither allows for a direct estimate of ecosystem-level parameters (e.g. heterotrophic respiration). In order to examine changes in total organic matter turnover along forest - peatland gradients in central Saskatchewan, we measured mass loss of native peat samples from six different depths (surface to 50 cm) over one year. Samples were obtained by sectioning short peat cores, and cores and samples were returned to their original position after determining the initial weight of each sample. A standard litter (birch popsicle sticks) was included at each depth, and water tables and soil temperature were monitored over the growing season. After one year, average mass loss in surface peat samples was similar to published values from litter bag studies, ranging from 12 to 21 percent in the environments examined. Native peat mass loss showed few systematic differences between sites or along the forest - peatland gradient, with over 60 percent of the total variability explained by depth alone. Mass loss of standard litter samples was highly variable, with high values in areas at the transition between upland and peatland that may have experienced recent disturbance. In combination, these results suggest strong litter-based control over natural rates of organic matter turnover. Estimates of heterotrophic respiration calculated from the mass loss data are higher than values obtained by eddy covariance or static chamber techniques, probably reflecting loss of material during the handling of samples or increased mass loss from manipulated profiles. Nevertheless, the core-based method is a useful tool in examining carbon dynamics of organic soils, since it provides a good relative index of organic matter turnover, and allows for separate examination of environmental and litter-based effects.

The Yucca Mountain Project prototype air-coring test, U12g tunnel, Nevada test site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ray, J.M.; Newsom, J.C.

1994-12-01

The Prototype Air-Coring Test was conducted at the Nevada Test Site (NTS) G-Tunnel facility to evaluate standard coring techniques, modified slightly for air circulation, for use in testing at a prospective nuclear waste repository at Yucca Mountain, Nevada. Air-coring technology allows sampling of subsurface lithology with minimal perturbation to ambient characteristic such as that required for exploratory holes near aquifers, environmental applications, and site characterization work. Two horizontal holes were cored, one 50 ft long and the other 150 ft long, in densely welded fractured tuff to simulate the difficult drilling conditions anticipated at Yucca Mountain. Drilling data from sevenmore » holes on three other prototype tests in nonwelded tuff were also collected for comparison. The test was used to establish preliminary standards of performance for drilling and dust collection equipment and to assess procedural efficiencies. The Longyear-38 drill achieved 97% recovery for HQ-size core (-2.5 in.), and the Atlas Copco dust collector (DCT-90) captured 1500 lb of fugitive dust in a mine environment with only minor modifications. Average hole production rates were 6-8 ft per 6-h shift in welded tuff and almost 20 ft per shift on deeper holes in nonwelded tuff. Lexan liners were successfully used to encapsulate core samples during the coring process and protect core properties effectively. The Prototype Air-Coring Test demonstrated that horizontal air coring in fractured welded tuff (to at least 150 ft) can be safely accomplished by proper selection, integration, and minor modification of standard drilling equipment, using appropriate procedures and engineering controls. The test also indicated that rig logistics, equipment, and methods need improvement before attempting a large-scale dry drilling program at Yucca Mountain.« less

Digitally available interval-specific rock-sample data compiled from historical records, Nevada National Security Site and vicinity, Nye County, Nevada

USGS Publications Warehouse

Wood, David B.

2007-11-01

Between 1951 and 1992, 828 underground tests were conducted on the Nevada National Security Site, Nye County, Nevada. Prior to and following these nuclear tests, holes were drilled and mined to collect rock samples. These samples are organized and stored by depth of borehole or drift at the U.S. Geological Survey Core Library and Data Center at Mercury, Nevada, on the Nevada National Security Site. From these rock samples, rock properties were analyzed and interpreted and compiled into project files and in published reports that are maintained at the Core Library and at the U.S. Geological Survey office in Henderson, Nevada. These rock-sample data include lithologic descriptions, physical and mechanical properties, and fracture characteristics. Hydraulic properties also were compiled from holes completed in the water table. Rock samples are irreplaceable because pre-test, in-place conditions cannot be recreated and samples can not be recollected from the many holes destroyed by testing. Documenting these data in a published report will ensure availability for future investigators.

Contaminant Gradients in Trees: Directional Tree Coring Reveals Boundaries of Soil and Soil-Gas Contamination with Potential Applications in Vapor Intrusion Assessment.

PubMed

Wilson, Jordan L; Samaranayake, V A; Limmer, Matthew A; Schumacher, John G; Burken, Joel G

2017-12-19

Contaminated sites pose ecological and human-health risks through exposure to contaminated soil and groundwater. Whereas we can readily locate, monitor, and track contaminants in groundwater, it is harder to perform these tasks in the vadose zone. In this study, tree-core samples were collected at a Superfund site to determine if the sample-collection location around a particular tree could reveal the subsurface location, or direction, of soil and soil-gas contaminant plumes. Contaminant-centroid vectors were calculated from tree-core data to reveal contaminant distributions in directional tree samples at a higher resolution, and vectors were correlated with soil-gas characterization collected using conventional methods. Results clearly demonstrated that directional tree coring around tree trunks can indicate gradients in soil and soil-gas contaminant plumes, and the strength of the correlations were directly proportionate to the magnitude of tree-core concentration gradients (spearman's coefficient of -0.61 and -0.55 in soil and tree-core gradients, respectively). Linear regression indicates agreement between the concentration-centroid vectors is significantly affected by in planta and soil concentration gradients and when concentration centroids in soil are closer to trees. Given the existing link between soil-gas and vapor intrusion, this study also indicates that directional tree coring might be applicable in vapor intrusion assessment.

Contaminant gradients in trees: Directional tree coring reveals boundaries of soil and soil-gas contamination with potential applications in vapor intrusion assessment

USGS Publications Warehouse

Wilson, Jordan L.; Samaranayake, V.A.; Limmer, Matthew A.; Schumacher, John G.; Burken, Joel G.

2017-01-01

Contaminated sites pose ecological and human-health risks through exposure to contaminated soil and groundwater. Whereas we can readily locate, monitor, and track contaminants in groundwater, it is harder to perform these tasks in the vadose zone. In this study, tree-core samples were collected at a Superfund site to determine if the sample-collection location around a particular tree could reveal the subsurface location, or direction, of soil and soil-gas contaminant plumes. Contaminant-centroid vectors were calculated from tree-core data to reveal contaminant distributions in directional tree samples at a higher resolution, and vectors were correlated with soil-gas characterization collected using conventional methods. Results clearly demonstrated that directional tree coring around tree trunks can indicate gradients in soil and soil-gas contaminant plumes, and the strength of the correlations were directly proportionate to the magnitude of tree-core concentration gradients (spearman’s coefficient of -0.61 and -0.55 in soil and tree-core gradients, respectively). Linear regression indicates agreement between the concentration-centroid vectors is significantly affected by in-planta and soil concentration gradients and when concentration centroids in soil are closer to trees. Given the existing link between soil-gas and vapor intrusion, this study also indicates that directional tree coring might be applicable in vapor intrusion assessment.

Geoconservation and scientific rock sampling: Call for geoethical education strategies

NASA Astrophysics Data System (ADS)

Druguet, Elena; Passchier, Cees W.; Pennacchioni, Giorgio; Carreras, Jordi

2013-04-01

Some geological outcrops have a special scientific or educational value, represent a geological type locality and/or have a considerable aesthetical/photographic value. Such important outcrops require appropriate management to safeguard them from potentially damaging and destructive activities. Damage done to such rock exposures can include drill sampling by geologist undertaken in the name of scientific advancement. In order to illustrate the serious damage scientific sampling can do, we give some examples of outcrops from Western Europe, North America and South Africa, important to structural geology and petrology, where sampling was undertaken by means of drilling methods without any protective measures. After the rock coring, the aesthetic and photographic value of these delicate outcrops has decreased considerably. Unfortunately, regulation and protection mechanisms and codes of conduct can be ineffective. The many resources of geological information available to the geoscientist community (e.g. via Internet, such as outcrops stored in websites like "Outcropedia") promote access to sites of geological interest, but can also have a negative effect on their conservation. Geoethical education on rock sampling is therefore critical for conservation of the geological heritage. Geoethical principles and educational actions are aimed to be promoted at different levels to improve geological sciences development and to enhance conservation of important geological sites. Ethical protocols and codes of conduct should include geoconservation issues, being explicit about responsible sampling. Guided and inspired by the UK Geologists's Association "Code of Conduct for Rock Coring" (MacFadyen, 2010), we present a tentative outline requesting responsible behaviour: » Drill sampling is particularly threatening because it has a negative visual impact, whilst it is often unnecessary. Before sampling, geologists should think about the question "is drill sampling necessary for the study being carried on?" » Do not take samples from the centre of a geological type locality or a site of especial scientific, didactic interest or aesthetical/photographic value. If an outcrop is spectacular enough to be photographed, then you should not core or sample the rock face that has been recorded. The same applies to outstanding outcrops stored in websites. » Sample other parts of the same or a neighbouring outcrop where there is less impact. Core samples must be discrete in location; take cores from the least exposed, least spectacular part of an outcrop and try to plug the holes using the outer end of the core, if possible. » Before sampling ask experts and authorities (e.g. Natural Reserve or National Park managers if the area is protected) for advise and permission. References: MacFadyen, C.C.J., 2010. The vandalizing effects of irresponsible core sampling: a call for a new code of conduct: Geology Today 26, 146-151. Outcropedia: http://www.outcropedia.org/

10 CFR 960.3-1-4-2 - Site nomination for characterization.

Code of Federal Regulations, 2012 CFR

2012-01-01

... testing of core samples for the evaluation of geochemical and engineering rock properties, and chemical... industrial activities; and extrapolations of regional data to estimate site-specific characteristics and...

10 CFR 960.3-1-4-2 - Site nomination for characterization.

Code of Federal Regulations, 2013 CFR

2013-01-01

... testing of core samples for the evaluation of geochemical and engineering rock properties, and chemical... industrial activities; and extrapolations of regional data to estimate site-specific characteristics and...

10 CFR 960.3-1-4-2 - Site nomination for characterization.

Code of Federal Regulations, 2011 CFR

2011-01-01

... testing of core samples for the evaluation of geochemical and engineering rock properties, and chemical... industrial activities; and extrapolations of regional data to estimate site-specific characteristics and...

10 CFR 960.3-1-4-2 - Site nomination for characterization.

Code of Federal Regulations, 2014 CFR

2014-01-01

... testing of core samples for the evaluation of geochemical and engineering rock properties, and chemical... industrial activities; and extrapolations of regional data to estimate site-specific characteristics and...

Trace elements and organic compounds in sediment and fish tissue from the Great Salt Lake basins, Utah, Idaho, and Wyoming, 1998-99

USGS Publications Warehouse

Waddell, Kidd M.; Giddings, Elise M.

2004-01-01

A study to determine the occurrence and distribution of trace elements, organochlorine pesticides, polychlorinated biphenyls (PCBs), and semivolatile organic compounds in sediment and in fish tissue was conducted in the Great Salt Lake Basins study unit of the National Water-Quality Assessment (NAWQA) program during 1998-99. Streambed-sediment and fish-tissue samples were collected concurrently at 11 sites and analyzed for trace-element concentration. An additional four sites were sampled for streambed sediment only and one site for fish tissue only. Organic compounds were analyzed from streambed-sediment and fish-tissue samples at 15 sites concurrently.Bed-sediment cores from lakes, reservoirs, and Farmington Bay collected by the NAWQA program in 1998 and by other researchers in 1982 were used to examine historical trends in trace-element concentration and to determine anthropogenic sources of contaminants. Cores collected in 1982 from Mirror Lake, a high-mountain reference location, showed an enrichment of arsenic, cadmium, copper, lead, tin, and zinc in the surface sediments relative to the deeper sediments, indicating that enrichment likely began after about 1900. This enrichment was attributed to atmospheric deposition during the period of metal-ore mining and smelting. A core from Echo Reservoir, in the Weber River Basin, however, showed a different pattern of trace-element concentration that was attributed to a local source. This site is located downstream from the Park City mining district, which is the most likely historical source of trace elements. Cores collected in 1998 from Farmington Bay show that the concentration of lead began to increase after 1842 and peaked during the mid-1980s and has been in decline since. Recent sediments deposited during 1996-98 indicate a 41- to 62-percent reduction since the peak in the mid-1980s.The concentration of trace elements in streambed sediment was greatest at sites that have been affected by historic mining, including sites on Little Cottonwood Creek in the Jordan River basin, Silver Creek in the Weber River basin, and the Weber River below the confluence with Silver Creek. There was significant correlation of lead concentrations in streambed sediment and fish tissue, but other trace elements did not correlate well. Streambed sediment and fish tissue collected from sites in the Bear River basin, which is predominantly rangeland and agriculture, generally had low concentrations of most elements.Sediment-quality guidelines were used to assess the relative toxicity of streambed-sediment sites to aquatic communities. Sites affected by mining exceeded the Probable Effect Concentration (PEC), the concentration at which it is likely there will be a negative effect on the aquatic community, for arsenic, cadmium, copper, lead, silver, mercury, and zinc. Sites that were not affected by mining did not exceed these criteria. Concentrations of trace elements in samples collected from the Great Salt Lake Basins study unit (GRSL) are high compared to those of samples collected nationally with the NAWQA program. Nine of 15 streambed-sediment samples and 11 of 14 fish-tissue samples had concentrations of at least one trace element greater than the concentration of 90 percent of the samples collected nationally during 1993-2000.Organic compounds that were examined in streambed sediment and fish-tissue samples also were examined in bed-sediment cores. A bed-sediment core from Farmington Bay of Great Salt Lake showed an increase in total polycyclic aromatic hydrocarbon (PAH) concentrations coincident with the increase in population in Salt Lake Valley, which drains into this bay. Analysis of streambed-sediment samples showed that the highest concentrations of PAHs were detected at urban sites, including two sites in the lower Jordan River (the Jordan River flows into Farmington Bay), the Weber River at Ogden Bay, and the Provo River near Provo. Other organic compounds detected in streambed sediment in the lower Jordan River were PCBs, DDT compounds, and chlordane compounds.Organic compounds were detected more frequently in fish tissue than in streambed sediment. Chlordane compounds and PCBs were detected more frequently at urban sites. DDT compounds were detected at 13 of 15 sites including urban and agricultural sites. Concentrations of total DDT in fish tissue exceeded the guideline for protection of fish-eating wildlife at two urban sites. The concentration of organic compounds in the GRSL study unit is low compared with that of samples collected nationally.

Fukushima Daiichi reactor source term attribution using cesium isotope ratios from contaminated environmental samples

DOE PAGES

Snow, Mathew S.; Snyder, Darin C.; Delmore, James E.

2016-01-18

Source term attribution of environmental contamination following the Fukushima Daiichi Nuclear Power Plant (FDNPP) disaster is complicated by a large number of possible similar emission source terms (e.g. FDNPP reactor cores 1–3 and spent fuel ponds 1–4). Cesium isotopic analyses can be utilized to discriminate between environmental contamination from different FDNPP source terms and, if samples are sufficiently temporally resolved, potentially provide insights into the extent of reactor core damage at a given time. Rice, soil, mushroom, and soybean samples taken 100–250 km from the FDNPP site were dissolved using microwave digestion. Radiocesium was extracted and purified using two sequentialmore » ammonium molybdophosphate-polyacrylonitrile columns, following which 135Cs/ 137Cs isotope ratios were measured using thermal ionization mass spectrometry (TIMS). Results were compared with data reported previously from locations to the northwest of FDNPP and 30 km to the south of FDNPP. 135Cs/ 137Cs isotope ratios from samples 100–250 km to the southwest of the FDNPP site show a consistent value of 0.376 ± 0.008. 135Cs/ 137Cs versus 134Cs/ 137Cs correlation plots suggest that radiocesium to the southwest is derived from a mixture of FDNPP reactor cores 1, 2, and 3. Conclusions from the cesium isotopic data are in agreement with those derived independently based upon the event chronology combined with meteorological conditions at the time of the disaster. In conclusion, cesium isotopic analyses provide a powerful tool for source term discrimination of environmental radiocesium contamination at the FDNPP site. For higher precision source term attribution and forensic determination of the FDNPP core conditions based upon cesium, analyses of a larger number of samples from locations to the north and south of the FDNPP site (particularly time-resolved air filter samples) are needed. Published in 2016. This article is a U.S. Government work and is in the public domain in the USA.« less

Fukushima Daiichi reactor source term attribution using cesium isotope ratios from contaminated environmental samples

DOE Office of Scientific and Technical Information (OSTI.GOV)

Snow, Mathew S.; Snyder, Darin C.; Delmore, James E.

Source term attribution of environmental contamination following the Fukushima Daiichi Nuclear Power Plant (FDNPP) disaster is complicated by a large number of possible similar emission source terms (e.g. FDNPP reactor cores 1–3 and spent fuel ponds 1–4). Cesium isotopic analyses can be utilized to discriminate between environmental contamination from different FDNPP source terms and, if samples are sufficiently temporally resolved, potentially provide insights into the extent of reactor core damage at a given time. Rice, soil, mushroom, and soybean samples taken 100–250 km from the FDNPP site were dissolved using microwave digestion. Radiocesium was extracted and purified using two sequentialmore » ammonium molybdophosphate-polyacrylonitrile columns, following which 135Cs/ 137Cs isotope ratios were measured using thermal ionization mass spectrometry (TIMS). Results were compared with data reported previously from locations to the northwest of FDNPP and 30 km to the south of FDNPP. 135Cs/ 137Cs isotope ratios from samples 100–250 km to the southwest of the FDNPP site show a consistent value of 0.376 ± 0.008. 135Cs/ 137Cs versus 134Cs/ 137Cs correlation plots suggest that radiocesium to the southwest is derived from a mixture of FDNPP reactor cores 1, 2, and 3. Conclusions from the cesium isotopic data are in agreement with those derived independently based upon the event chronology combined with meteorological conditions at the time of the disaster. In conclusion, cesium isotopic analyses provide a powerful tool for source term discrimination of environmental radiocesium contamination at the FDNPP site. For higher precision source term attribution and forensic determination of the FDNPP core conditions based upon cesium, analyses of a larger number of samples from locations to the north and south of the FDNPP site (particularly time-resolved air filter samples) are needed. Published in 2016. This article is a U.S. Government work and is in the public domain in the USA.« less

Fukushima Daiichi reactor source term attribution using cesium isotope ratios from contaminated environmental samples.

PubMed

Snow, Mathew S; Snyder, Darin C; Delmore, James E

2016-02-28

Source term attribution of environmental contamination following the Fukushima Daiichi Nuclear Power Plant (FDNPP) disaster is complicated by a large number of possible similar emission source terms (e.g. FDNPP reactor cores 1-3 and spent fuel ponds 1-4). Cesium isotopic analyses can be utilized to discriminate between environmental contamination from different FDNPP source terms and, if samples are sufficiently temporally resolved, potentially provide insights into the extent of reactor core damage at a given time. Rice, soil, mushroom, and soybean samples taken 100-250 km from the FDNPP site were dissolved using microwave digestion. Radiocesium was extracted and purified using two sequential ammonium molybdophosphate-polyacrylonitrile columns, following which (135)Cs/(137) Cs isotope ratios were measured using thermal ionization mass spectrometry (TIMS). Results were compared with data reported previously from locations to the northwest of FDNPP and 30 km to the south of FDNPP. (135)Cs/(137)Cs isotope ratios from samples 100-250 km to the southwest of the FDNPP site show a consistent value of 0.376 ± 0.008. (135)Cs/(137)Cs versus (134)Cs/(137)Cs correlation plots suggest that radiocesium to the southwest is derived from a mixture of FDNPP reactor cores 1, 2, and 3. Conclusions from the cesium isotopic data are in agreement with those derived independently based upon the event chronology combined with meteorological conditions at the time of the disaster. Cesium isotopic analyses provide a powerful tool for source term discrimination of environmental radiocesium contamination at the FDNPP site. For higher precision source term attribution and forensic determination of the FDNPP core conditions based upon cesium, analyses of a larger number of samples from locations to the north and south of the FDNPP site (particularly time-resolved air filter samples) are needed. Published in 2016. This article is a U.S. Government work and is in the public domain in the USA.

One-year measurements of chloroethenes in tree cores and groundwater at the SAP Mimoň Site, Northern Bohemia.

PubMed

Wittlingerova, Z; Machackova, J; Petruzelkova, A; Trapp, S; Vlk, K; Zima, J

2013-02-01

Chlorinated ethenes (CE) are among the most frequent contaminants of soil and groundwater in the Czech Republic. Because conventional methods of subsurface contamination investigation are costly and technically complicated, attention is directed on alternative and innovative field sampling methods. One promising method is sampling of tree cores (plugs of woody tissue extracted from a host tree). Volatile organic compounds can enter into the trunks and other tissues of trees through their root systems. An analysis of the tree core can thus serve as an indicator of the subsurface contamination. Four areas of interest were chosen at the experimental site with CE groundwater contamination and observed fluctuations in groundwater concentrations. CE concentrations in groundwater and tree cores were observed for a 1-year period. The aim was to determine how the CE concentrations in obtained tree core samples correlate with the level of contamination of groundwater. Other factors which can affect the transfer of contaminants from groundwater to wood were also monitored and evaluated (e.g., tree species and age, level of groundwater table, river flow in the nearby Ploučnice River, seasonal effects, and the effect of the remediation technology operation). Factors that may affect the concentration of CE in wood were identified. The groundwater table level, tree species, and the intensity of transpiration appeared to be the main factors within the framework of the experiment. Obtained values documented that the results of tree core analyses can be used to indicate the presence of CE in the subsurface. The results may also be helpful to identify the best sampling period for tree coring and to learn about the time it takes until tree core concentrations react to changes in groundwater conditions. Interval sampling of tree cores revealed possible preservation of the contaminant in the wood of trees.

The EOS land validation core sites: background information and current status

USGS Publications Warehouse

Morisette, J.; Privette, J.L.; Justice, C.; Olson, D.; Dwyer, John L.; Davis, P.; Starr, D.; Wickland, D.

1999-01-01

The EOS Land Validation Core Sites1 will provide the user community with timely ground, aircraft, and satellite data for EOS science and validation investigations. The sites, currently 24 distributed worldwide, represent a consensus among the instrument teams and validation investigators and represent a range of global biome types (see Figure 1 and Table 1; Privette et al., 1999; Justice et al., 1998). The sites typically have a history of in situ and remote observations and can expect continued monitoring and land cover research activities. In many cases, a Core Site will have a tower equipped with above-canopy instrumentation for nearcontinuous sampling of landscape radiometric, energy and CO2 flux, meteorological variables, and atmospheric aerosol and water vapor data. These will be complemented by intensive field measurement campaigns. The data collected at these sites will provide an important resource for the broader science community. These sites can also provide a foundation for a validation network supported and used by all international space agencies.

Variations in the depths of sulfate-methane transition zone (SMTZ) in UBGH2-6 drilling site in Ulleung Basin, East sea of Korea

NASA Astrophysics Data System (ADS)

Kim, Y.; Chun, J. H.; Bahk, J. J.; Ryu, B. J.; Um, I. K.

2016-12-01

The second Ulleung Basin Gas hydrate Drilling Expedition (UBGH2) was conducted in the Ulleung Basin, East Sea of Korea in 2010. Gas hydrates were observed in depth interval from 140 mbsf (meter below seafloor) to 160 mbsf in core sediment taken from UBGH2-6 drilling site, located in the north-western part of the basin (2,164 m water depth). To characterize the geochemical process for UBGH2-6 core sediments, pore fluid samples and headspace gas samples were extracted from core sediments and analyzed SO42- and CH4 concentrations. Based on SO42- and CH4 concentrations, sulfate-methane transition zone (SMTZ), where SO42- is depleted to zero and CH4 starts to increase was defined at a depth of approximately 6.50 mbsf in 2010. And in order to identify the variations in the depths of SMTZ at UBGH2-6 drilling site since 2010 (UBGH2), whole-round piston cores were collected from UBGH2-6 drilling site from 2013 to 2015. We analyzed SO42- and CH4 concentrations and identified the SMTZ for the last 3 years. The depths of SMTZ for the cores obtained from 2013, 2014 and 2015 are approximately 3.50 mbsf, 5.00 mbsf, and 5.00 mbsf respectively. The analysis results indicate that the SMTZ in 2013, 2014, and 2015 are shallower than the SMTZ of 2010.

Biogeographic Comparison of Lophelia-Associated Bacterial Communities in the Western Atlantic Reveals Conserved Core Microbiome

PubMed Central

Kellogg, Christina A.; Goldsmith, Dawn B.; Gray, Michael A.

2017-01-01

Over the last decade, publications on deep-sea corals have tripled. Most attention has been paid to Lophelia pertusa, a globally distributed scleractinian coral that creates critical three-dimensional habitat in the deep ocean. The bacterial community associated with L. pertusa has been previously described by a number of studies at sites in the Mediterranean Sea, Norwegian fjords, off Great Britain, and in the Gulf of Mexico (GOM). However, use of different methodologies prevents direct comparisons in most cases. Our objectives were to address intra-regional variation and to identify any conserved bacterial core community. We collected samples from three distinct colonies of L. pertusa at each of four locations within the western Atlantic: three sites within the GOM and one off the east coast of the United States. Amplicon libraries of 16S rRNA genes were generated using primers targeting the V4–V5 hypervariable region and 454 pyrosequencing. The dominant phylum was Proteobacteria (75–96%). At the family level, 80–95% of each sample was comprised of five groups: Pirellulaceae, Pseudonocardiaceae, Rhodobacteraceae, Sphingomonadaceae, and unclassified Oceanospirillales. Principal coordinate analysis based on weighted UniFrac distances showed a clear distinction between the GOM and Atlantic samples. Interestingly, the replicate samples from each location did not always cluster together, indicating there is not a strong site-specific influence. The core bacterial community, conserved in 100% of the samples, was dominated by the operational taxonomic units of genera Novosphingobium and Pseudonocardia, both known degraders of aromatic hydrocarbons. The sequence of another core member, Propionibacterium, was also found in prior studies of L. pertusa from Norway and Great Britain, suggesting a role as a conserved symbiont. By examining more than 40,000 sequences per sample, we found that GOM samples were dominated by the identified conserved core sequences, whereas open Atlantic samples had a much higher proportion of locally consistent bacteria. Further, predictive functional profiling highlights the potential for the L. pertusa microbiome to contribute to chemoautotrophy, nutrient cycling, and antibiotic production. PMID:28522997

Biogeographic Comparison of Lophelia-Associated Bacterial Communities in the Western Atlantic Reveals Conserved Core Microbiome.

PubMed

Kellogg, Christina A; Goldsmith, Dawn B; Gray, Michael A

2017-01-01

Over the last decade, publications on deep-sea corals have tripled. Most attention has been paid to Lophelia pertusa , a globally distributed scleractinian coral that creates critical three-dimensional habitat in the deep ocean. The bacterial community associated with L. pertusa has been previously described by a number of studies at sites in the Mediterranean Sea, Norwegian fjords, off Great Britain, and in the Gulf of Mexico (GOM). However, use of different methodologies prevents direct comparisons in most cases. Our objectives were to address intra-regional variation and to identify any conserved bacterial core community. We collected samples from three distinct colonies of L. pertusa at each of four locations within the western Atlantic: three sites within the GOM and one off the east coast of the United States. Amplicon libraries of 16S rRNA genes were generated using primers targeting the V4-V5 hypervariable region and 454 pyrosequencing. The dominant phylum was Proteobacteria (75-96%). At the family level, 80-95% of each sample was comprised of five groups: Pirellulaceae, Pseudonocardiaceae, Rhodobacteraceae, Sphingomonadaceae, and unclassified Oceanospirillales. Principal coordinate analysis based on weighted UniFrac distances showed a clear distinction between the GOM and Atlantic samples. Interestingly, the replicate samples from each location did not always cluster together, indicating there is not a strong site-specific influence. The core bacterial community, conserved in 100% of the samples, was dominated by the operational taxonomic units of genera Novosphingobium and Pseudonocardia , both known degraders of aromatic hydrocarbons. The sequence of another core member, Propionibacterium , was also found in prior studies of L. pertusa from Norway and Great Britain, suggesting a role as a conserved symbiont. By examining more than 40,000 sequences per sample, we found that GOM samples were dominated by the identified conserved core sequences, whereas open Atlantic samples had a much higher proportion of locally consistent bacteria. Further, predictive functional profiling highlights the potential for the L. pertusa microbiome to contribute to chemoautotrophy, nutrient cycling, and antibiotic production.

Biogeographic comparison of Lophelia-associated bacterial communities in the Western Atlantic reveals conserved core microbiome

USGS Publications Warehouse

Kellogg, Christina A.; Goldsmith, Dawn; Gray, Michael A.

2017-01-01

Over the last decade, publications on deep-sea corals have tripled. Most attention has been paid to Lophelia pertusa, a globally distributed scleractinian coral that creates critical three-dimensional habitat in the deep ocean. The bacterial community associated with L. pertusa has been previously described by a number of studies at sites in the Mediterranean Sea, Norwegian fjords, off Great Britain, and in the Gulf of Mexico (GOM). However, use of different methodologies prevents direct comparisons in most cases. Our objectives were to address intra-regional variation and to identify any conserved bacterial core community. We collected samples from three distinct colonies of L. pertusa at each of four locations within the western Atlantic: three sites within the GOM and one off the east coast of the United States. Amplicon libraries of 16S rRNA genes were generated using primers targeting the V4–V5 hypervariable region and 454 pyrosequencing. The dominant phylum was Proteobacteria (75–96%). At the family level, 80–95% of each sample was comprised of five groups: Pirellulaceae, Pseudonocardiaceae, Rhodobacteraceae, Sphingomonadaceae, and unclassified Oceanospirillales. Principal coordinate analysis based on weighted UniFrac distances showed a clear distinction between the GOM and Atlantic samples. Interestingly, the replicate samples from each location did not always cluster together, indicating there is not a strong site-specific influence. The core bacterial community, conserved in 100% of the samples, was dominated by the operational taxonomic units of genera Novosphingobium and Pseudonocardia, both known degraders of aromatic hydrocarbons. The sequence of another core member, Propionibacterium, was also found in prior studies of L. pertusa from Norway and Great Britain, suggesting a role as a conserved symbiont. By examining more than 40,000 sequences per sample, we found that GOM samples were dominated by the identified conserved core sequences, whereas open Atlantic samples had a much higher proportion of locally consistent bacteria. Further, predictive functional profiling highlights the potential for the L. pertusa microbiome to contribute to chemoautotrophy, nutrient cycling, and antibiotic production.

Initial Results from the Deep Drilling of Lake Junin, Perú

NASA Astrophysics Data System (ADS)

Rodbell, D. T.; Abbott, M. B.; Weidhaas, N.; Hatfield, R. G.; Woods, A.; Hillman, A. L.; Tapia, P. M.; Chen, C. Y.; McGee, D.; Stoner, J. S.

2016-12-01

Lake Junín (11.0°S, 76.2°W, 4085 masl) is an intermontane, high-elevation lake in the inner-tropics of the Southern Hemisphere that spans 300 km2. With a maximum water depth of 12m, Lake Junin is dammed at its northern and southern ends by alluvial fans that emanate from glacial valleys in both cordillera. These fans can be traced to moraines that are >250 ka, indicating that the lake is at least this old. During the maximum extent of late Cenozoic glaciation, glaciers reached the lake edge but at no time over the last 1 million years, or more, has Lake Junín been overridden by ice. Lake Junín is thus one of the few lakes in the tropical Andes that predates the maximum extent of glaciation and is in a geomorphic position to record the waxing and waning of alpine glaciers in nearby cordillera. Sediment cores obtained between 1980 and 1996 reveal that sediment deposited during the last glacial cycle ( 30-16 ka) is dominated by glacial flour whereas sediment deposited during the last 16 ka consists predominantly of authigenic calcite (marl) with ostracod carapaces punctuated with intervals of gyttja and peat. In July and August of 2015, piston cores were obtained from three sites in Lake Junin. Multiple overlapping cores from the deepest water site (Site 1) extend to 100 m below lake floor (mblf), and those from two shallow water, paleoglacier-proximal sites (Sites 2 and 3) extend 23 and 51 mblf, respectively. Samples acquired at 8-cm resolution from Site 1 were analyzed for total organic carbon (TOC) and total inorganic carbon [as Ca(Mg)CO3; TIC] by coulometry. Total carbon (TC) was analyzed by combusting 10 mg samples at 1000°C and quantifying the resultant CO2 by coulometry whereas TIC was analyzed by reacting 10 mg samples in 6N H3PO4 and quantifying the resultant CO2 by coulometry; TOC was determined from TOC=TC-TIC. Over the last glacial postglacial cycle (last 30 ka), mean CaCO3 and TOC concentrations in Site 1 cores are higher ( 33% and 7.4%, respectively) than those in shallow water settings ( 9.5% and 4%). Similarly, mean magnetic susceptibility (MS) is lower in Site 1 cores (6.9 SI) than in the most paleoglacier-proximal shallow water site (Site 2, 9.4 SI). Site 1 records 7 glacial and interglacial cycles whereas shallow water locations appear to be dominated by sediment deposited during the last glacial-interglacial cycle.

Contaminant trends in reservoir sediment cores as records of influent stream quality

USGS Publications Warehouse

Van Metre, P.C.; Mahler, B.J.

2004-01-01

When reconstructing water-quality histories from lake and reservoir cores, it is sometimes assumed that the chemical signatures in the cores reflect historical water quality in the influent streams. To investigate this assumption, concentrations of metals, PAHs, and organochlorine compounds in sediment cores were compared to those associated with an influent-stream suspended sediment for three reservoirs in Fort Worth, TX, and two reservoirs in Boston, MA, U.S.A., and interpreted in light of land-use and regulation histories. In evaluating relations between suspended sediments and cores, three levels of preservation were indicated: (1) influent concentrations and historical trends are preserved in cores (metals at all sites; some organic contaminants at some sites); (2) some loss occurs during transport and initial deposition but relative historical trends are preserved in cores (some organic contaminants at some sites); and (3) neither stream concentrations nor relative historical trends are preserved (dieldrin and p,p???-DDT). The degree of preservation of influent concentration histories varied between lakes, particularly for PAHs. The results support the use of sediment cores to infer streamwater-quality histories for many contaminants but indicate that reservoir-bottom sediment samples might underestimate concentrations of organic contaminants in some streams.

Deposition and chemistry of bottom sediments in Cochiti Lake, north-central New Mexico

USGS Publications Warehouse

Wilson, Jennifer T.; Van Metre, Peter C.

2000-01-01

Bottom sediments were sampled at seven sites in Cochiti Lake in September 1996. Sediment cores penetrating the entire lacustrine sediment sequence were collected at one site near the dam. Surficial sediments were sampled at the near-dam site and six other sites located along the length of the reservoir. Analyses included grain size, major and trace elements, organochlorine compounds, polycyclic aromatic hydrocarbons (PAH's), and radionuclides. Concentrations of trace elements, organic compounds, and radionuclides are similar to those in other Rio Grande reservoirs and are low compared to published sediment-quality guidelines. Most elements and compounds that were detected did not show trends in the age estimated sediment cores with the exception of a decreasing trend in total DDT concentrations from about 1980 to 1992. The mixture of PAH's suggests that the increase is caused by inputs of fuel-related PAH and not combustion- related PAH.

Monitoring Well Installation and Groundwater Sampling and Analysis Plan at the USARC Training Reserve, 84th Division, Milwaukee, Wisconsin

DTIC Science & Technology

1988-11-01

paint chips at the sampling site. 0 Clean water tanks, pumps, mud pans, hoses, including hoses and tanks used to transfer water from source to drill rig...TO’ LCA , Filll I F’APCr,;I~- € C/ " rKL2PIrlA , ATTFNrIGN TO SMOKING. ALCOHOLF MFDrICATIONP AND FXPOSI.RE TO CARCINOGENS.1 ENERAL MEDICAl. HISTORY...A. General: 1. Place samples in core trough for visual inspection. After logging, place selected samples in sample jars or wood core boxes. 2. Seal

Depleted uranium investigation at missile impact sites in White Sands Missile Range

DOE Office of Scientific and Technical Information (OSTI.GOV)

Van Etten, D.M.; Purtymun, W.D.

1994-01-01

An investigation for residual depleted uranium was conducted at Pershing missile impact sites on the White Sands Missile Range. Subsurface core soil samples were taken at Chess, Salt Target, and Mine Impact Sites. A sampling pump was installed in a monitoring well at Site 65 where a Pershing earth penetrator was not recovered. Pumping tests and water samples were taken at this site. Chess Site, located in a gypsum flat, was the only location showing elevated levels of depleted uranium in the subsurface soil or perched groundwater. Small fragments can still be found on the surface of the impact sites.more » The seasonal flooding and near surface water has aided in the movement of surface fragments.« less

Characterizing Mobile/Less-Mobile Porosity and Solute Exchange in Dual-Domain Media Using Tracer Experiments and Electrical Measurements in a Hassler-Type Core Holder

NASA Astrophysics Data System (ADS)

Falzone, S.; Slater, L. D.; Day-Lewis, F. D.; Parker, B. L.; Keating, K.; Robinson, J.

2017-12-01

Mass transfer is the process by which solute is retained in less-mobile porosity domains, and later released into the mobile porosity domain. This process is often responsible for the slow arrival and gradual release of contaminants and solute tracers. Recent studies have outlined methods using dual-domain mass transfer (DDMT) models for characterizing this phenomenon. These models use the non-linear relationship of bulk (σb) and fluid (σf) conductivity, collected from electrical methods during tracer experiments, to characterize the less-mobile/mobile porosity ratio (β) and the mass-transfer rate coefficient (α). DDMT models use the hysteretic σb-σf relationship observed while solute tracers are injected and then flushed from a sample media. Due to limitations in observing the hysteretic σb-σf relationship, this method has not been used to characterize low permeability samples. We have developed an experimental method for testing porous rock cores that allows us to develop a fundamental understanding of contaminant storage and release in consolidated rock. We test the approach on cores from sedimentary rock sites where mass transfer is expected to occur between hydraulically connected fractures and the adjacent low permeability rock matrix. Our method uses a Hassler-type core holder, designed to apply confining pressure around the outside of a sample core, which hydraulically isolates the sample core, allowing water to be injected into it at increased pressures. The experimental apparatus was also designed to measure σb with spectral induced polarization (SIP) measurements, and σf from a sampling port located at the center of the core. Cores were initially saturated with a solution with high electrical conductivity ( 80000 μS/cm). DI water was then injected into the cores at elevated pressures (>60 psi) and the saturating solution was flushed from the cores, in order to generate flow rates fast enough to capture the non-linear σb-σf relationship expected when DDMT occurs. Our initial results demonstrate the existence of a non-linear σb-σf relationship indicative of DDMT for a tight sandstone core from a contaminated fractured rock site. Integrating the electrical results with known physical characteristics of the cores, we are able to quantify the mass transfer characteristics of the cores.

INNOVATIVE TECHNOLOGY EVALUATION REPORT ...

EPA Pesticide Factsheets

The Russian Peat Borer designed and fabricated by Aquatic Research Instruments was demonstrated under the U.S. Environmental Protection Agency (EPA) Superfund Innovative Technology Evaluation Program in April and May 1999 at sites in EPA Regions 1 and 5, respectively. In addition to assessing ease of sampler operation, key objectives of the demonstration included evaluating the sampler?s ability to (1) consistently collect a given volume of sediment, (2) consistently collect sediment in a given depth interval, (3) collect samples with consistent characteristics from a homogenous layer of sediment, and (4) collect samples under a variety of site conditions. This report describes the demonstration results for the Russian Peat Borer and two conventional samplers (the Hand Corer and Vibrocorer) used as reference samplers. During the demonstration, the Russian Peat Borer was the only sampler that collected samples in the deep depth interval (4 to 11 feet below sediment surface). It collected representative and relatively uncompressed core samples of consolidated sediment in discrete depth intervals. The reference samplers collected relatively compressed samples of both consolidated and unconsolidated sediments from the sediment surface downward; sample representativeness may be questionable because of core shortening and core compression. Sediment stratification was preserved only for consolidated sediment samples collected by the Russian Peat Borer but for bo

A core handling device for the Mars Sample Return Mission

NASA Technical Reports Server (NTRS)

Gwynne, Owen

1989-01-01

A core handling device for use on Mars is being designed. To provide a context for the design study, it was assumed that a Mars Rover/Sample Return (MRSR) Mission would have the following characteristics: a year or more in length; visits by the rover to 50 or more sites; 100 or more meter-long cores being drilled by the rover; and the capability of returning about 5 kg of Mars regolith to Earth. These characteristics lead to the belief that in order to bring back a variegated set of samples that can address the range of scientific objetives for a MRSR mission to Mars there needs to be considerable analysis done on board the rover. Furthermore, the discrepancy between the amount of sample gathered and the amount to be returned suggests that there needs to be some method of choosing the optimal set of samples. This type of analysis will require pristine material-unaltered by the drilling process. Since the core drill thermally and mechanically alters the outer diameter (about 10 pct) of the core sample, this outer area cannot be used. The primary function of the core handling device is to extract subsamples from the core and to position these subsamples, and the core itself if needed, with respect to the various analytical instruments that can be used to perform these analyses.

In silico evolution of the Drosophila gap gene regulatory sequence under elevated mutational pressure.

PubMed

Chertkova, Aleksandra A; Schiffman, Joshua S; Nuzhdin, Sergey V; Kozlov, Konstantin N; Samsonova, Maria G; Gursky, Vitaly V

2017-02-07

Cis-regulatory sequences are often composed of many low-affinity transcription factor binding sites (TFBSs). Determining the evolutionary and functional importance of regulatory sequence composition is impeded without a detailed knowledge of the genotype-phenotype map. We simulate the evolution of regulatory sequences involved in Drosophila melanogaster embryo segmentation during early development. Natural selection evaluates gene expression dynamics produced by a computational model of the developmental network. We observe a dramatic decrease in the total number of transcription factor binding sites through the course of evolution. Despite a decrease in average sequence binding energies through time, the regulatory sequences tend towards organisations containing increased high affinity transcription factor binding sites. Additionally, the binding energies of separate sequence segments demonstrate ubiquitous mutual correlations through time. Fewer than 10% of initial TFBSs are maintained throughout the entire simulation, deemed 'core' sites. These sites have increased functional importance as assessed under wild-type conditions and their binding energy distributions are highly conserved. Furthermore, TFBSs within close proximity of core sites exhibit increased longevity, reflecting functional regulatory interactions with core sites. In response to elevated mutational pressure, evolution tends to sample regulatory sequence organisations with fewer, albeit on average, stronger functional transcription factor binding sites. These organisations are also shaped by the regulatory interactions among core binding sites with sites in their local vicinity.

Evaluation of surficial sediment toxicity and sediment physico-chemical characteristics of representative sites in the Lagoon of Venice (Italy)

NASA Astrophysics Data System (ADS)

Losso, C.; Arizzi Novelli, A.; Picone, M.; Marchetto, D.; Pessa, G.; Molinaroli, E.; Ghetti, P. F.; Volpi Ghirardini, A.

2004-11-01

Toxic hazard in sites with varying types and levels of contamination in the Lagoon of Venice was estimated by means of toxicity bioassays based on the early life-stages of the autochthonous sea urchin Paracentrotus lividus. Elutriate was chosen as the test matrix, due to its ability to highlight potential toxic effects towards sensitive biological components of the water column caused by sediment resuspension phenomena affecting the Lagoon. Surficial sediments (core-top 5 cm deep), directly influenced by resuspension/redeposition processes, and core sediments (core 20 cm deep), recording time-mediated contamination, were sampled in some sites located in the lagoonal area most greatly influenced by anthropogenic activities. Particle size, organic matter and water content were also analysed. In two sites, the results of physical parameters showed that the core-top sediments were coarser than the 20-cm core sediments. Sperm cell toxicity test results showed the negligible acute toxicity of elutriates from all investigated sites. The embryo toxicity test demonstrated a short-term chronic toxicity gradient for elutriates from the 20-cm core sediments, in general agreement both with the expected contamination gradient and with results of the Microtox® solid-phase test. Elutriates of the core-top 5-cm sediments revealed a totally inverted gradient, in comparison with that for the 20-cm core sediments, and the presence of a "hot spot" of contamination in the site chosen as a possible reference. Investigations on ammonia and sulphides as possible confounding factors excluded their contribution to this "hot spot". Integrated physico-chemical and toxicity results on sediments at various depths demonstrated the presence of disturbed sediments in the central basin of the Lagoon of Venice.

The distribution of tree roots in Douglas-fir forests in the Pacific Northwest in relation to depth, space, coarse organic matter and mineral fragments.

Treesearch

Constance A. Harrington; Scott M. Holub; Cici Bauer; E. Ashley Steel

2017-01-01

This study evaluated relationships between site or tree characteristics and below-ground materials in Douglas-fir forests of the Pacific Northwest. We core-sampled living roots, dead organic matter, and mineral fragments at three soil depths on a 300-sample grid at nine forested sites in western Washington and Oregon resulting in approximately 7200 samples. We explored...

Seabed texture and composition changes offshore of Port Royal Sound, South Carolina before and after the dredging for beach nourishment

NASA Astrophysics Data System (ADS)

Xu, Kehui; Sanger, Denise; Riekerk, George; Crowe, Stacie; Van Dolah, Robert F.; Wren, P. Ansley; Ma, Yanxia

2014-08-01

Beach nourishment has been a strategy widely used to slow down coastal erosion in many beaches around the world. The dredging of sand at the borrow site, however, can have complicated physical, geological and ecological impacts. Our current knowledge is insufficient to make accurate predictions of sediment infilling in many dredging pits due to lack of detailed sediment data. Two sites in the sandy shoal southeast of Port Royal Sound (PRS) of South Carolina, USA, were sampled 8 times from April 2010 to March 2013; one site (defined as 'borrow site') was 2 km offshore and used as the dredging site for beach nourishment of nearby Hilton Head Island in Beaufort County, South Carolina, and the other site (defined as 'reference site') was 10 km offshore and not directly impacted by the dredging. A total of 184 surficial sediment samples were collected randomly at two sites during 8 sampling periods. Most sediments were fine sand, with an average grain size of 2.3 phi and an organic matter content less than 2%. After the dredging in December 2011-January 2012, sediments at the borrow site became finer, changing from 1.0 phi to 2.3 phi, and carbonate content decreased from 10% to 4%; changes in mud content and organic matter were small. Compared with the reference site, the borrow site experienced larger variations in mud and carbonate content. An additional 228 sub-samples were gathered from small cores collected at 5 fixed stations in the borrow site and 1 fixed station at the reference site 0, 3, 6, 9, and 12 months after the dredging; these down-core sub-samples were divided into 1-cm slices and analyzed using a laser diffraction particle size analyzer. Most cores were uniform vertically and consisted of fine sand with well to moderately well sorting and nearly symmetrical averaged skewness. Based on the analysis of grain size populations, 2 phi- and 3 phi-sized sediments were the most dynamic sand fractions in PRS. Mud deposition on shoals offshore of PRS presumably happens when offshore mud transport is prevalent and there is a following rapid sand accumulation to bury the mud. However, in this borrow site there was very little accumulation of mud. This will allow the site to be used in future nourishment projects presuming no accumulation of mud occurs in the future.

Innovations in Sampling Pore Fluids From Deep-Sea Hydrate Sites

NASA Astrophysics Data System (ADS)

Lapham, L. L.; Chanton, J. P.; Martens, C. S.; Schaefer, H.; Chapman, N. R.; Pohlman, J. W.

2003-12-01

We have developed a sea-floor probe capable of collecting and returning undecompressed pore water samples at in situ pressures for determination of dissolved gas concentrations and isotopic values in deep-sea sediments. In the summer of 2003, we tested this instrument in sediments containing gas hydrates off Vancouver Island, Cascadia Margin from ROPOS (a remotely operated vehicle) and in the Gulf of Mexico from Johnson-Sea-Link I (a manned submersible). Sediment push cores were collected alongside the probe to compare methane concentrations and stable carbon isotope compositions in decompressed samples vs. in situ samples obtained by probe. When sufficient gas was available, ethane and propane concentrations and isotopes were also compared. Preliminary data show maximum concentrations of dissolved methane to be 5mM at the Cascadia Margin Fish Boat site (850m water depth) and 12mM in the Gulf of Mexico Bush Hill hydrate site (550m water depth). Methane concentrations were, on average, five times as high in probe samples as in the cores. Carbon isotopic values show a thermogenic input and oxidative effects approaching the sediment-water interface at both sites. This novel data set will provide information that is critical to the understanding of the in situ processes and environmental conditions controlling gas hydrate occurrences in sediments.

Near-bottom pelagic bacteria at a deep-water sewage sludge disposal site.

PubMed

Takizawa, M; Straube, W L; Hill, R T; Colwell, R R

1993-10-01

The epibenthic bacterial community at deep-ocean sewage sludge disposal site DWD-106, located approximately 106 miles (ca. 196 km) off the coast of New Jersey, was assessed for changes associated with the introduction of large amounts of sewage sludge. Mixed cultures and bacterial isolates obtained from water overlying sediment core samples collected at the deep-water (2,500 m) municipal sewage disposal site were tested for the ability to grow under in situ conditions of temperature and pressure. The responses of cultures collected at a DWD-106 station heavily impacted by sewage sludge were compared with those of samples collected from a station at the same depth which was not contaminated by sewage sludge. Significant differences were observed in the ability of mixed bacterial cultures and isolates from the two sites to grow under deep-sea pressure and temperature conditions. The levels of sludge contamination were established by enumerating Clostridium perfringens, a sewage indicator bacterium, in sediment samples from the two sites. The results of hybridization experiments in which DNAs extracted directly from the water overlying sediment core samples were used indicate that the reference site epibenthic community, the disposal site epibenthic community, and the community in a surface sludge plume share many members. Decreased culturability of reference site mixed cultures in the presence of sewage sludge was observed. Thus, the culturable portions of both the autochthonous and allochthonous bacterial communities at the disposal site may be inhibited in situ, the former by sewage sludge and the latter by high pressure and low temperature.

Wetland paleoecological study of southwest coastal Louisiana: sediment cores and diatom calibration dataset

USGS Publications Warehouse

Smith, Kathryn E. L.; Flocks, James G.; Steyer, Gregory D.; Piazza, Sarai C.

2015-01-01

Wetland sediment data were collected in 2009 and 2010 throughout the southwest Louisiana Chenier Plain as part of a pilot study to develop a diatom-based proxy for past wetland water chemistry and the identification of sediment deposits from tropical storms. The complete dataset includes forty-six surface sediment samples and nine sediment cores. The surface sediment samples were collected in fresh, intermediate, and brackish marsh and are located coincident with Coastwide Reference Monitoring System (CRMS) sites. The nine sediment cores were collected at the Rockefeller Wildlife Refuge (RWR) located in Grand Chenier, La.

Gas content and composition of gas hydrate from sediments of the southeastern North American continental margin

USGS Publications Warehouse

Lorenson, T.D.; Collett, T.S.

2000-01-01

Gas hydrate samples were recovered from four sites (Sites 994, 995, 996, and 997) along the crest of the Blake Ridge during Ocean Drilling Program (ODP) Leg 164. At Site 996, an area of active gas venting, pockmarks, and chemosynthetic communities, vein-like gas hydrate was recovered from less than 1 meter below seafloor (mbsf) and intermittently through the maximum cored depth of 63 mbsf. In contrast, massive gas hydrate, probably fault filling and/or stratigraphically controlled, was recovered from depths of 260 mbsf at Site 994, and from 331 mbsf at Site 997. Downhole-logging data, along with geochemical and core temperature profiles, indicate that gas hydrate at Sites 994, 995, and 997 occurs from about 180 to 450 mbsf and is dispersed in sediment as 5- to 30-m-thick zones of up to about 15% bulk volume gas hydrate. Selected gas hydrate samples were placed in a sealed chamber and allowed to dissociate. Evolved gas to water volumetric ratios measured on seven samples from Site 996 ranged from 20 to 143 mL gas/mL water to 154 mL gas/mL water in one sample from Site 994, and to 139 mL gas/mL water in one sample from Site 997, which can be compared to the theoretical maximum gas to water ratio of 216. These ratios are minimum gas/water ratios for gas hydrate because of partial dissociation during core recovery and potential contamination with pore waters. Nonetheless, the maximum measured volumetric ratio indicates that at least 71% of the cages in this gas hydrate were filled with gas molecules. When corrections for pore-water contamination are made, these volumetric ratios range from 29 to 204, suggesting that cages in some natural gas hydrate are nearly filled. Methane comprises the bulk of the evolved gas from all sites (98.4%-99.9% methane and 0%-1.5% CO2). Site 996 hydrate contained little CO2 (0%-0.56%). Ethane concentrations differed significantly from Site 996, where they ranged from 720 to 1010 parts per million by volume (ppmv), to Sites 994 and 997, which contained much less ethane (up to 86 ppmv). Up to 19 ppmv propane and other higher homologues were noted; however, these gases are likely contaminants derived from sediment in some hydrate samples. CO2 concentrations are less in gas hydrate than in the surrounding sediment, likely an artifact of core depressurization, which released CO2 derived from dissolved organic carbon (DIC) into sediment. The isotopic composition of methane from gas hydrate ranges from ??13C of -62.5??? to -70.7??? and ??D of -175??? to -200??? and is identical to the isotopic composition of methane from surrounding sediment. Methane of this isotopic composition is mainly microbial in origin and likely produced by bacterial reduction of bicarbonate. The hydrocarbon gases here are likely the products of early microbial diagenesis. The isotopic composition of CO2 from gas hydrate ranges from ??13C of -5.7 to -6.9, about 15??? lighter than CO2 derived from nearby sediment.

A sample-freezing drive shoe for a wire line piston core sampler

USGS Publications Warehouse

Murphy, F.; Herkelrath, W.N.

1996-01-01

Loss of fluids and samples during retrieval of cores of saturated, noncohesive sediments results in incorrect measures of fluid distributions and an inaccurate measure of the stratigraphic position of the sample. To reduce these errors, we developed a hollow drive shoe that freezes in place the lowest 3 inches (75 mm) of a 1.88-inch-diameter (48 mm), 5-foot-long (1.5 m) sediment sample taken using a commercial wire line piston core sampler. The end of the core is frozen by piping liquid carbon dioxide at ambient temperature through a steel tube from a bottle at the land surface to the drive shoe where it evaporates and expands, cooling the interior surface of the shoe to about -109??F (-78??C). Freezing a core end takes about 10 minutes. The device was used to collect samples for a study of oil-water-air distributions, and for studies of water chemistry and microbial activity in unconsolidated sediments at the site of an oil spill near Bemidji, Minnesota. Before freezing was employed, samples of sandy sediments from near the water table sometimes flowed out of the core barrel as the sampler was withdrawn. Freezing the bottom of the core allowed for the retention of all material that entered the core barrel and lessened the redistribution of fluids within the core. The device is useful in the unsaturated and shallow saturated zones, but does not freeze cores well at depths greater than about 20 feet (6 m) below water, possibly because the feed tube plugs with dry ice with increased exhaust back-pressure, or because sediment enters the annulus between the core barrel and the core barrel liner and blocks the exhaust.

Enantiomer fractions of chlordane components in sediment from U.S. Geological Survey sites in lakes and rivers

USGS Publications Warehouse

Ulrich, E.M.; Foreman, W.T.; Van Metre, P.C.; Wilson, J.T.; Rounds, S.A.

2009-01-01

Spatial, temporal, and sediment-type trends in enantiomer signatures were evaluated for cis- and trans-chlordane (CC, TC) in archived core, suspended, and surficial-sediment samples from six lake, reservoir, and river sites across the United States. The enantiomer fractions (EFs) measured in these samples are in good agreement with those reported for sediment, soil, and air samples in previous studies. The chlordane EFs were generally close to the racemic value of 0.5, with CC values ranging from 0.493 to 0.527 (usually >0.5) and TC values from 0.463 to 0.53 (usually <0.5). EF changes with core depth were detected for TC and CC in some cores, with the most non-racemic values near the top of the core. Surficial and suspended sediments generally have EF values similar to the top core layers but are often more non-racemic, indicating that enantioselective degradation is occurring before soils are eroded and deposited into bottom sediments. We hypothesize that rapid losses (desorption or degradation) from suspended sediments of the more bioavailable chlordane fraction during transport and initial deposition could explain the apparent shift to more racemic EF values in surficial and top core sediments. Near racemic CC and TC in the core profiles suggest minimal alteration of chlordane from biotic degradation, unless it is via non-enantioselective processes. EF values for the heptachlor degradate, heptachlor epoxide (HEPX), determined in surficial sediments from one location only were always non-racemic (EF ??? 0.66), were indicative of substantial biotic processing, and followed reported EF trends.

Reconstructed plutonium fallout in the GV7 firn core from Northern Victoria Land, East Antarctica

NASA Astrophysics Data System (ADS)

Hwang, H.; Han, Y.; Kang, J.; Lee, K.; Hong, S.; Hur, S. D.; Narcisi, B.; Frezzotti, M.

2017-12-01

Atmospheric nuclear explosions during the period from the 1940s to the 1980s are the major anthropogenic source of plutonium (Pu) in the environment. In this work, we analyzed fg g-1 levels of artificial Pu, released predominantly by atmospheric nuclear weapons tests. We measured 351 samples which collected a 78 m-depth fire core at the site of GV7 (S 70°41'17.1", E 158°51'48.9", 1950 m a.s.l.), Northern Victoria Land, East Antarctica. To determine the Pu concentration in the samples, we used an inductively coupled plasma sector field mass spectrometry coupled with an Apex high-efficiency sample introduction system, which has the advantages of small sample consumption and simple sample preparation. We reconstructed the firn core Pu fallout record for the period after 1954 CE shows a significant fluctuation in agreement with past atmospheric nuclear testing. These data will contribute to ice core research by providing depth-age information.

Comparing basal area growth models, consistency of parameters, and accuracy of prediction

Treesearch

J.J. Colbert; Michael Schuckers; Desta Fekedulegn

2002-01-01

We fit alternative sigmoid growth models to sample tree basal area historical data derived from increment cores and disks taken at breast height. We examine and compare the estimated parameters for these models across a range of sample sites. Models are rated on consistency of parameters and on their ability to fit growth data from four sites that are located across a...

Rapid analysis of the microfibril angle of loblolly pine from two test sites using near-infrared analysis

Treesearch

ChiLeung So; Jennifer Myszewski; Thomas Elder; Les Groom

2013-01-01

Abstract There have been several recent studies employing near infrared (NIR) spectroscopy for the rapid determination of microfibril angle (MFA). However, only a few have utilized samples cut from individual rings of increment cores, and none have been as large as this present study, sampling over 600 trees from two test sites producing over 3000 individual ring...

Physical properties of sidewall cores from Decatur, Illinois

USGS Publications Warehouse

Morrow, Carolyn A.; Kaven, Joern; Moore, Diane E.; Lockner, David A.

2017-10-18

To better assess the reservoir conditions influencing the induced seismicity hazard near a carbon dioxide sequestration demonstration site in Decatur, Ill., core samples from three deep drill holes were tested to determine a suite of physical properties including bulk density, porosity, permeability, Young’s modulus, Poisson’s ratio, and failure strength. Representative samples of the shale cap rock, the sandstone reservoir, and the Precambrian basement were selected for comparison. Physical properties were strongly dependent on lithology. Bulk density was inversely related to porosity, with the cap rock and basement samples being both least porous (

Historical contributions of phosphorus from natural and agricultural sources and implications for stream water quality, Cheney Reservoir watershed, south-central Kansas

USGS Publications Warehouse

Pope, Larry M.; Milligan, Chad R.; Mau, David Phillip

2002-01-01

An examination of soil cores collected from 43 nonagricultural coring sites in the Cheney Reservoir watershed of south-central Kansas was conducted by the U.S. Geological Survey in September 1999. The cores were collected as part of an ongoing cooperative study with the city of Wichita, Kansas. The 43 sites (mostly cemeteries) were thought to have total phosphorus concentrations in the soil that are representative of natural conditions (unaffected by human activity). The purpose of this report is to present the analysis and evaluation of these soil cores, to quantify the phosphorus contributions to Cheney Reservoir from natural and agricultural sources, and to provide estimates of stream-water-quality response to natural concentrations of total phosphorus in the soil. Analysis of soil cores from the 43 sites produced natural concentrations of total phosphorus that ranged from 74 to 539 milligrams per kilogram with a median concentration of 245 milligrams per kilogram in 2-inch soil cores and from 50 to 409 milligrams per kilogram with a median concentration of 166 milligrams per kilogram in 8-inch soil cores. Natural concentrations of total phosphorus in soil were statistically larger in samples from coring sites in the eastern half of the watershed than in samples from coring sites in the western half of the watershed. This result partly explains a previously determined west-to-east increase in total phosphorus yields in streams of the Cheney Reservoir watershed. A comparison of total phosphorus concentrations in soil under natural conditions to the historical mean total phosphorus concentration in agriculturally enriched bottom sediment in Cheney Reservoir indicated that agricultural activities within the watershed have increased total phosphorus concentrations in watershed soil that is transported in streams to about 2.9 times natural concentrations. Retention efficiencies for phosphorus and sediment historically transported to Cheney Reservoir were calculated at 92 and 99 percent, respectively. Most of the phosphorus was retained in bottom sediment. Sediment accumulation in Cheney Reservoir was less than reservoir design-life specifications on the basis of the age of the reservoir. Estimates of mean total phosphorus concentrations for selected streams in the Cheney Reservoir watershed under natural concentrations of total phosphorus in soil and a historic set of watershed conditions indicate that water from two of the five streamflow sampling sites would not meet the total phosphorus water-quality goal of 0.10 milligram per liter established by the Cheney Reservoir Watershed Task Force Committee. These results imply that the water-quality goal for total phosphorus in some streams of the watershed may not be met simply by reducing the amount of phosphorus applied. Instead, meeting the goal could involve a combination of approaches-for example, reducing the agricultural distribution of phosphorus and implementing changes in watershed activities to mitigate phosphorus movement to surface water.

A Comparison of Naturally-Occurring and Artificially Stimulated Uranium(VI) Bioreduction in Sediment from a Field-scale Experiment in Rifle, CO

NASA Astrophysics Data System (ADS)

Campbell, K. M.; Williams, K. H.; Lesher, E.; Davis, J. A.; Long, P. E.

2007-12-01

Long-term remediation of uranium (U)-contaminated groundwater poses one of the greatest challenges in the clean-up of impacted sites. One solution is to reduce dissolved U(VI) to insoluble U(IV) precipitates by stimulating indigenous metal reducing bacterial populations in situ. Contamination from a former U mine tailings repository (Rifle, CO) provides a research site to study the efficacy of biostimulated U(VI) reduction at the field scale. Several cores were drilled in June 2007 across a region of naturally-occurring U(VI) bioreduction. The cores represent a cross section of sediment that ranges from minimally reducing to highly reducing. Anaerobic sediment samples from the cores were analyzed for labile U(VI) content by carbonate extraction in anoxic conditions (pH 9.4, 14 mM NaHCO3, 2.8 mM Na2CO¬3). A subset of the same core sections were dried and oxidized by exposure to air for 2 weeks. The carbonate extraction was repeated, and the amount of U(IV) present in the anaerobic sample was calculated by difference between the anoxic and oxidized extractions. An acid extraction was also performed on the oxidized sediments to compare the carbonate extractable and the acid extractable U fractions. The highest U concentrations were found in the highly bioreduced sediment, with the majority of U present as U(IV) (66-92%). The regions of highest bioreduction also correspond to elevated concentrations of solid phase organic carbon, suggesting that natural bioreduction is stimulated by zones of increased organic carbon content. The same field site was then used for an artificially stimulated bioreduction experiment, where the indigenous bacterial community was stimulated by injecting acetate upgradient of the core collection location. Carbonate and acid extractions were performed on core samples taken after the completion of the acetate injection. This work evaluates the composition of the sediment before and after biostimulation as a way of directly comparing the extent of natural U(VI) bioreduction to acetate-stimulated bioreduction in order to facilitate the design of a more effective bioremediation strategy for this site.

Accelerated gravity testing of aquitard core permeability and implications at formation and regional scale

NASA Astrophysics Data System (ADS)

Timms, W. A.; Crane, R.; Anderson, D. J.; Bouzalakos, S.; Whelan, M.; McGeeney, D.; Rahman, P. F.; Acworth, R. I.

2016-01-01

Evaluating the possibility of leakage through low-permeability geological strata is critically important for sustainable water supplies, the extraction of fuels from coal and other strata, and the confinement of waste within the earth. The current work demonstrates that relatively rapid and realistic vertical hydraulic conductivity (Kv) measurements of aquitard cores using accelerated gravity can constrain and compliment larger-scale assessments of hydraulic connectivity. Steady-state fluid velocity through a low-K porous sample is linearly related to accelerated gravity (g level) in a centrifuge permeameter (CP) unless consolidation or geochemical reactions occur. A CP module was custom designed to fit a standard 2 m diameter geotechnical centrifuge (550 g maximum) with a capacity for sample dimensions up to 100 mm diameter and 200 mm length, and a total stress of ˜ 2 MPa at the base of the core. Formation fluids were used as influent to limit any shrink-swell phenomena, which may alter the permeability. Kv results from CP testing of minimally disturbed cores from three sites within a clayey-silt formation varied from 10-10 to 10-7 m s-1 (number of samples, n = 18). Additional tests were focussed on the Cattle Lane (CL) site, where Kv within the 99 % confidence interval (n = 9) was 1.1 × 10-9 to 2.0 × 10-9 m s-1. These Kv results were very similar to an independent in situ Kv method based on pore pressure propagation though the sequence. However, there was less certainty at two other core sites due to limited and variable Kv data. Blind standard 1 g column tests underestimated Kv compared to CP and in situ Kv data, possibly due to deionised water interactions with clay, and were more time-consuming than CP tests. Our Kv results were compared with the set-up of a flow model for the region, and considered in the context of heterogeneity and preferential flow paths at site and formation scale. Reasonable assessments of leakage and solute transport through aquitards over multi-decadal timescales can be achieved by accelerated core testing together with complimentary hydrogeological monitoring, analysis, and modelling.

Physical properties of the Nankai inner accretionary prism sediments at Site C0002, IODP Expedition 348.

NASA Astrophysics Data System (ADS)

Kitamura, M.; Kitajima, H.; Henry, P.; Valdez, R. D., II; Josh, M.; Tobin, H. J.; Saffer, D. M.; Hirose, T.; Toczko, S.; Maeda, L.

2014-12-01

Integrated Ocean Drilling Program (IODP) Nankai Trough Seismogenic Zone Experiment (NanTroSEIZE) Expedition 348 focused on deepening the existing riser hole at Site C0002 to ~3000 meters below seafloor (mbsf) to access the deep interior of the Miocene inner accretionary prism. This unique tectonic environment, which has never before been sampled in situ by ocean drilling, was characterized through riser drilling, logging while drilling (LWD), mud gas monitoring and sampling, and cuttings and core analysis. Shipboard physical properties measurements including moisture and density (MAD), electrical conductivity, P-wave, natural gamma ray, and magnetic susceptibility measurements were performed mainly on cuttings samples from 870.5 to 3058.5 mbsf, but also on core samples from 2163 and 2204 mbsf. MAD measurements were conducted on seawater-washed cuttings ("bulk cuttings") in two size fractions of >4 mm and 1-4 mm from 870.5 to 3058.5 mbsf, and hand-picked intact cuttings from the >4 mm size fractions within 1222.5-3058.5 mbsf interval. The bulk cuttings show grain density of ~2.7 g/cm3, bulk density of 1.9 g/cm3 to 2.2 g/cm3, and porosity of 50% to 32%. Compared to the values on bulk cuttings, the intact cuttings show almost the same grain density, but higher bulk density and lower porosity, respectively. Combined with the MAD measurements on hand-picked intact cuttings and discrete core samples from previous expeditions, porosity generally decreases from ~60% to ~20% from the seafloor to 3000 mbsf at Site C0002. Electrical conductivity and P-wave velocity on discrete samples, which were prepared from both cuttings and core samples in the depth interval of 1745.5-3058.5 mbsf, range 0.15-0.9 S/m and 1.7-4.5 km/s, respectively. The electrical resistivity on discrete samples is higher than the LWD resistivity data but the overall depth trends are similar. The electrical conductivity and P-wave velocity on discrete samples corrected for in-situ pressure and temperature will be presented. The shipboard physical properties measurements on cuttings are very limited but can be useful with careful treatment and observation.

Paleomagnetism of the Oman Ophiolite: New Results from Oman Drilling Project Cores

NASA Astrophysics Data System (ADS)

Horst, A. J.; Till, J. L.; Koornneef, L.; Usui, Y.; Kim, H.; Morris, A.

2017-12-01

The Oman Drilling Project drilled holes at four sites in a transect through the southern massifs of the Samail ophiolite, and recovered 1500 m of igneous and metamorphic rocks. We focus on three sites from the oceanic crustal section including lower layered gabbros (GT1A), the mid-crustal layered to foliated gabbro transition (GT2A), and the shallower transition from sheeted dikes to varitextured gabbros (GT3A). Detailed core descriptions, analyses, and paleomagnetic measurements, were made on D/V Chikyu from July to September 2017 to utilize the core laboratory facilities similar to IODP expeditions. Shipboard measurements included anisotropy of magnetic susceptibility (AMS) and alternating field and thermal demagnetization of 597 discrete samples. Sample demagnetization behavior is varied from each of the cores, with some revealing multiple components of magnetization, and others yielding nearly univectorial data. The interpretation of results from the lower crustal cores is complicated by the pervasive presence of secondary magnetite. In almost all samples, a stable component was resolved (interpreted as a characteristic remanent magnetization) after removal of a lower-coercivity or lower unblocking-temperature component. The inclinations of the stable components in the core reference frame are very consistent in Hole GT1A. However, a transition from negative to positive inclinations in GT2A suggests some structural complexity, possibly as a result of intense late faulting activity. Both abrupt and gradual transitions between multiple zones of negative and positive inclinations occur in Hole GT3A. Interpretation and direct comparison of remanence between drill sites is difficult as recovered core pieces currently remain azimuthally unoriented, and GT2A was drilled at a plunge of 60°, whereas GT1A and GT3A were both drilled vertically. Work is ongoing to use borehole imagery to reorient the core pieces and paleomagnetic data into a geographic in situ reference frame. We will present an overview of preliminary AMS and remanence data that will be used in the future to 1) document deformational histories, 2) characterize magmatic flow directions at different structural levels, and 3) identify the magnetic mineralogy of remanence carriers throughout the oceanic crustal section.

Geomagnetic Excursions and High-Latitude Paleomagnetic Records of Glaciomarine Sediments from the Western Greenland Margin (Baffin Bay)

NASA Astrophysics Data System (ADS)

Richter, C.; Jensen, S. R.; Acton, G. D.; Evans, H. F.

2017-12-01

We present new paleomagnetic results from Quaternary sediment samples recovered during the Baffin Bay Scientific Coring Expedition conducted by the JOIDES Resolution in 2012. The expedition recovered well-preserved core material from the Arctic Basin, providing an outstanding opportunity for the study of the behavior of the geomagnetic field at high latitude. We analyzed material from 12 sites cored at latitudes between 74°45.32'N and 75°46.68'N in the Melville Bay region (Cape York and Melville Ridge) of Baffin Bay located at an average water depth of 394 m. The Quaternary glaciomarine sediments are up to 150 m thick and consist of very soft diatom-bearing muds to clast-rich sandy and muddy diamicts, which suggest deposition in a subglacial to ice-procimal environment. We carried out paleomagnetic and rock magnetic measurements on the shipboard cryogenic magnetometer at 5-cm resolution on 32 split-core sections and a selected number of discrete samples, and recently processed measurements taken at 1-cm resolution on eight U-channel samples from the uppermost Holocene part of the section. Stepwise demagnetization of the NRM demonstrates excellent demagnetization behavior, with a viscous isothermal remanent magnetization overprint, induced by the coring and sampling process, and typically removed by the 20 mT demagnetization step. The magnetic inclination data are characterized by steep, 80°, normal inclinations, consistent with the site position near the North Pole. Thermal demagnetization, magnetic susceptibility, isothermal remanent magnetization, and hysteresis parameters indicate that the primary magnetic carrier consists of a low-coercivity mineral, e.g., magnetite and/or titanomagnetite, with minor traces of higher-coercivity minerals. Well-developed geomagnetic excursions in the upper part of the section can be correlated between several sites. Although dating of these sediments remains a challenge because of the lack of carbonates we will discuss possible age models and use them to assign ages to the geomagnetic excursions.

The feasibility of recharge rate determinations using the steady- state centrifuge method

USGS Publications Warehouse

Nimmo, J.R.; Stonestrom, David A.; Akstin, K.C.

1994-01-01

The establishment of steady unsaturated flow in a centrifuge permits accurate measurement of small values of hydraulic conductivity (K). This method can provide a recharge determination if it is applied to an unsaturated core sample from a depth at which gravity alone drives the flow. A K value determined at the in situ water content indicates the long-term average recharge rate at a point. Tests of this approach have been made at two sites. For sandy core samples a better knowledge of the matric pressure profiles is required before a recharge rate can be determined. Fine-textured cores required new developments of apparatus and procedures, especially for making centrifuge measurements with minimal compaction of the samples. -from Authors

Accessing SAFOD data products: Downhole measurements, physical samples and long-term monitoring

NASA Astrophysics Data System (ADS)

Weiland, C.; Zoback, M.; Hickman, S. H.; Ellsworth, W. L.

2005-12-01

Many different types of data were collected during SAFOD Phases 1 and 2 (2004-2005) as part of the National Science Foundation's EarthScope program as well as from the SAFOD Pilot Hole, drilled in 2002 and funded by the International Continental Drilling Program (ICDP). Both SAFOD and the SAFOD Pilot Hole are being conducted as a close collaboration between NSF, the U.S. Geological Survey and the ICDP. SAFOD data products include cuttings, core and fluid samples; borehole geophysical measurements; and strain, tilt, and seismic recordings from the multilevel SAFOD borehole monitoring instruments. As with all elements of EarthScope, these data (and samples) are openly available to members of the scientific and educational communities. This paper presents the acquisition, storage and distribution plan for SAFOD data products. Washed and unwashed drill cuttings and mud samples were collected during Phases 1 and 2, along with three spot cores at depths of 1.5, 2.5, and 3.1 km. A total of 52 side-wall cores were also collected in the open-hole interval between 2.5 and 3.1 km depth. The primary coring effort will occur during Phase 3 (2007), when we will continuously core up to four, 250-m-long multilaterals directly within and adjacent to the San Andreas Fault Zone. Drill cuttings, core, and fluid samples from all three Phases of SAFOD drilling are being curated under carefully controlled conditions at the Integrated Ocean Drilling Program (IODP) Gulf Coast Repository in College Station, Texas. Photos of all physical samples and a downloadable sample request form are available on the ICDP website (http://www.icdp-online.de/sites/sanandreas/index/index.html). A suite of downhole geophysical measurements was conducted during the first two Phases of SAFOD drilling, as well as during drilling of the SAFOD Pilot Hole. These data include density, resistivity, porosity, seismic and borehole image logs and are also available via the ICDP website. The SAFOD monitoring program includes fiber-optic strain, tilt, seismic and fluid-pressure recording instruments. Seismic data from the Pilot Hole array are now available in SEED format from the Northern California Earthquake Data Center (http://quake.geo.berkeley.edu/safod/). The strain and tilt instruments are still undergoing testing and quality assurance, and these data will be available through the same web site as soon as possible. Lastly, two terabytes of unprocessed (SEG-2 format) data from a two-week deployment of an 80-level seismic array during April/May 2005 by Paulsson Geophysical Services, Inc. are now available via the IRIS data center (http://www.iris.edu/data/data.htm). Drilling parameters include real-time descriptions of drill cuttings mineralogy, drilling mud properties, and mechanical data related to the drilling process and are available via the ICDP web site. Current status reports on SAFOD drilling, borehole measurements, sampling, and monitoring instrumentation will continue to be available from the EarthScope web site (http://www.earthscope.org).

Water-quality monitoring for a pilot piling removal field evaluation, Coal Creek Slough, Washington, 2008-09

USGS Publications Warehouse

Nilsen, Elena B.; Alvarez, David A.

2011-01-01

Significant Findings Water and sediment quality monitoring was conducted before and after the removal of a piling field located in Coal Creek Slough near Longview, Washington. Passive chemical samplers and continuous water-quality monitoring instruments were deployed at the piling removal site, Coal Creek Slough Site 1 (CCS1), and at a comparison site, Coal Creek Slough Site 2 (CCS2), before (2008) and after (2009) piling removal. Surface and subsurface (core) sediment samples were collected before and after piling removal and were analyzed for grain size, organic carbon content, and chemicals of concern. Significant findings from this study include: * Phenanthrene was the only compound detected in wood piling samples analyzed for a large suite of semivolatile organic compounds and polycyclic aromatic hydrocarbons (PAHs). Metals potentially associated with wood treatment were detected in the wood piling samples at low concentrations. * Organic carbon was slightly lower in core samples from CCS1 in pre-removal (2008) and post-removal (2009) samples than in surface samples from both sites in both years. * Grain-size class distributions were relatively uniform between sites and years. * Thirty-four out of 110 chemicals of concern were detected in sediments. Eight of those detected were anthropogenic waste indicator (AWI) compounds, 18 were PAHs, 4 were sterols, and 4 were metals potentially associated with wood treatment. * Nearly all reported concentrations of chemicals of concern in sediments are qualified as estimates, primarily due to interferences in extracts resulting from complex sample matrices. Indole, perylene, and fluoranthene are reported without qualification for some of the samples, and the metals are reported without qualification for all samples. * The highest frequency of detection of chemicals of concern was seen in the pre-removal surface samples at both sites. * AWI compounds were detected less frequently and at lower concentrations during the post-removal sampling compared to the pre-removal sampling. * Several PAHs were detected at relatively high concentrations in core samples, likely indicating historical sources. * Most commonly detected PAHs in sediments were 2,6-dimethylnaphthalene, fluoranthene, perylene, and pyrene. * Most commonly detected AWIs in sediments were 3-methyl-1h-indole (skatol), acetophenone, indole, phenol, and paracresol. * Sedimentary concentrations of perylene exceeded available sediment quality guidelines. Perylene is widespread in the environment and has large potential natural sources in addition to its anthropogenic sources. * Concentrations of metals did not exceed sediment quality guidelines. * Multiple organochlorine pesticides, both banned and currently used, were detected at each site using passive samplers. * Commonly detected pesticides included hexachlorobenzene, pentachloroanisole (a degradation product of pentachlorophenol), diazinon, cis-chlordane, endosulfan, DDD, and endosulfan sulfate. * PBDE concentrations detected in passive sampler extracts were less than the method detection limit at all sites with the exception of PBDE-99, detected at a concentration less than the reporting limit. * The fragrance galaxolide was detected at a concentration greater than the method detection limit. * Common PAHs, such as phenanthrene, fluoranthene, and pyrene, were detected in every passive sampler. * Dissolved oxygen concentration was slightly higher at site CCS1 compared to site CCS2 in both years. * Overall, there was no systematic increase in chemicals of concern at the restoration site during post-removal monitoring compared to conditions during pre-removal monitoring. Any immediate, short-duration effects of piling removal on water quality could not be determined because monitoring was not conducted during the removal.

A wireline piston core barrel for sampling cohesionless sand and gravel below the water table

USGS Publications Warehouse

Zapico, Michael M.; Vales, Samuel; Cherry, John A.

1987-01-01

A coring device has been developed to obtain long and minimally disturbed samples of saturated cohesionless sand and gravel. The coring device, which includes a wireline and piston, was developed specifically for use during hollow-stem auger drilling but it also offers possibilities for cable tool and rotary drilling. The core barrel consists of an inner liner made of inexpensive aluminum or plastic tubing, a piston for core recovery, and an exterior steel housing that protects the liner when the core barrel is driven into the aquifer. The core barrel, which is approximately 1.6m (5.6 feet) long, is advanced ahead of the lead auger by hammering at the surface on drill rods that are attached to the core barrel. After the sampler has been driven 1.5m (5 feet), the drill rods are detached and a wireline is used to hoist the core barrel, with the sample contained in the aluminum or plastic liner, to the surface. A vacuum developed by the piston during the coring operation provides good recovery of both the sediment and aquifer fluids contained in the sediment. In the field the sample tubes can be easily split along their length for on-site inspection or they can be capped with the pore water fluids inside and transported to the laboratory. The cores are 5cm (2 inches) in diameter by 1.5m (5 feet) long. Core acquisition to depths of 35m (115 feet), with a recovery greater than 90 percent, has become routine in University of Waterloo aquifer studies. A large diameter (12.7cm [5 inch]) version has also been used successfully. Nearly continuous sample sequences from sand and gravel aquifers have been obtained for studies of sedimentology, hydraulic conductivity, hydrogeochemistry and microbiology.

INTEGRATED DEMONSTRATION OF SURFACTANT-ENHANCED AQUIFER REMEDIATION WITH SURFACTANT RECOVERY AND REUSE

EPA Science Inventory

The demonstration site will be the base dry cleaning facility at Camp Lejeune, North Carolina. Conservative and partitioning tracer tests will be used in conjunction with conventional core and ground-water sampling to characterize the site with respect to DNAPL composition and d...

Phytoforensics: Trees as bioindicators of potential indoor exposure via vapor intrusion.

PubMed

Wilson, Jordan L; Samaranayake, V A; Limmer, Matt A; Burken, Joel G

2018-01-01

Human exposure to volatile organic compounds (VOCs) via vapor intrusion (VI) is an emerging public health concern with notable detrimental impacts on public health. Phytoforensics, plant sampling to semi-quantitatively delineate subsurface contamination, provides a potential non-invasive screening approach to detect VI potential, and plant sampling is effective and also time- and cost-efficient. Existing VI assessment methods are time- and resource-intensive, invasive, and require access into residential and commercial buildings to drill holes through basement slabs to install sampling ports or require substantial equipment to install groundwater or soil vapor sampling outside the home. Tree-core samples collected in 2 days at the PCE Southeast Contamination Site in York, Nebraska were analyzed for tetrachloroethene (PCE) and results demonstrated positive correlations with groundwater, soil, soil-gas, sub-slab, and indoor-air samples collected over a 2-year period. Because tree-core samples were not collocated with other samples, interpolated surfaces of PCE concentrations were estimated so that comparisons could be made between pairs of data. Results indicate moderate to high correlation with average indoor-air and sub-slab PCE concentrations over long periods of time (months to years) to an interpolated tree-core PCE concentration surface, with Spearman's correlation coefficients (ρ) ranging from 0.31 to 0.53 that are comparable to the pairwise correlation between sub-slab and indoor-air PCE concentrations (ρ = 0.55, n = 89). Strong correlations between soil-gas, sub-slab, and indoor-air PCE concentrations and an interpolated tree-core PCE concentration surface indicate that trees are valid indicators of potential VI and human exposure to subsurface environment pollutants. The rapid and non-invasive nature of tree sampling are notable advantages: even with less than 60 trees in the vicinity of the source area, roughly 12 hours of tree-core sampling with minimal equipment at the PCE Southeast Contamination Site was sufficient to delineate vapor intrusion potential in the study area and offered comparable delineation to traditional sub-slab sampling performed at 140 properties over a period of approximately 2 years.

Phytoforensics: Trees as bioindicators of potential indoor exposure via vapor intrusion

USGS Publications Warehouse

Wilson, Jordan L.; Samaranayake, V.A.; Limmer, Matthew A.; Burken, Joel G.

2018-01-01

Human exposure to volatile organic compounds (VOCs) via vapor intrusion (VI) is an emerging public health concern with notable detrimental impacts on public health. Phytoforensics, plant sampling to semi-quantitatively delineate subsurface contamination, provides a potential non-invasive screening approach to detect VI potential, and plant sampling is effective and also time- and cost-efficient. Existing VI assessment methods are time- and resource-intensive, invasive, and require access into residential and commercial buildings to drill holes through basement slabs to install sampling ports or require substantial equipment to install groundwater or soil vapor sampling outside the home. Tree-core samples collected in 2 days at the PCE Southeast Contamination Site in York, Nebraska were analyzed for tetrachloroethene (PCE) and results demonstrated positive correlations with groundwater, soil, soil-gas, sub-slab, and indoor-air samples collected over a 2-year period. Because tree-core samples were not collocated with other samples, interpolated surfaces of PCE concentrations were estimated so that comparisons could be made between pairs of data. Results indicate moderate to high correlation with average indoor-air and sub-slab PCE concentrations over long periods of time (months to years) to an interpolated tree-core PCE concentration surface, with Spearman’s correlation coefficients (ρ) ranging from 0.31 to 0.53 that are comparable to the pairwise correlation between sub-slab and indoor-air PCE concentrations (ρ = 0.55, n = 89). Strong correlations between soil-gas, sub-slab, and indoor-air PCE concentrations and an interpolated tree-core PCE concentration surface indicate that trees are valid indicators of potential VI and human exposure to subsurface environment pollutants. The rapid and non-invasive nature of tree sampling are notable advantages: even with less than 60 trees in the vicinity of the source area, roughly 12 hours of tree-core sampling with minimal equipment at the PCE Southeast Contamination Site was sufficient to delineate vapor intrusion potential in the study area and offered comparable delineation to traditional sub-slab sampling performed at 140 properties over a period of approximately 2 years.

Phytoforensics: Trees as bioindicators of potential indoor exposure via vapor intrusion

PubMed Central

2018-01-01

Human exposure to volatile organic compounds (VOCs) via vapor intrusion (VI) is an emerging public health concern with notable detrimental impacts on public health. Phytoforensics, plant sampling to semi-quantitatively delineate subsurface contamination, provides a potential non-invasive screening approach to detect VI potential, and plant sampling is effective and also time- and cost-efficient. Existing VI assessment methods are time- and resource-intensive, invasive, and require access into residential and commercial buildings to drill holes through basement slabs to install sampling ports or require substantial equipment to install groundwater or soil vapor sampling outside the home. Tree-core samples collected in 2 days at the PCE Southeast Contamination Site in York, Nebraska were analyzed for tetrachloroethene (PCE) and results demonstrated positive correlations with groundwater, soil, soil-gas, sub-slab, and indoor-air samples collected over a 2-year period. Because tree-core samples were not collocated with other samples, interpolated surfaces of PCE concentrations were estimated so that comparisons could be made between pairs of data. Results indicate moderate to high correlation with average indoor-air and sub-slab PCE concentrations over long periods of time (months to years) to an interpolated tree-core PCE concentration surface, with Spearman’s correlation coefficients (ρ) ranging from 0.31 to 0.53 that are comparable to the pairwise correlation between sub-slab and indoor-air PCE concentrations (ρ = 0.55, n = 89). Strong correlations between soil-gas, sub-slab, and indoor-air PCE concentrations and an interpolated tree-core PCE concentration surface indicate that trees are valid indicators of potential VI and human exposure to subsurface environment pollutants. The rapid and non-invasive nature of tree sampling are notable advantages: even with less than 60 trees in the vicinity of the source area, roughly 12 hours of tree-core sampling with minimal equipment at the PCE Southeast Contamination Site was sufficient to delineate vapor intrusion potential in the study area and offered comparable delineation to traditional sub-slab sampling performed at 140 properties over a period of approximately 2 years. PMID:29451904

Magnetostratigraphy and Rock Magnetic Characterization of Baltic Sea IODP Expedition 347 Sites M0059 and M0060.

NASA Astrophysics Data System (ADS)

Herrero-Bervera, E.; Lau, J. K. S.; Snowball, I.

2014-12-01

We have studied the rock magnetic and paleomagnetic properties of a ~205 meter-long composite core from Site M0059 (Little Belt, BSB3) and ~210 meter-long core from Site M0060 (Anholt Loch, BSB1) recovering for the most part clays, (silty) sands, sandy clays and gravel. We deployed 454 (Site M0059) and 297 (site M0060) 8-cc discrete samples at approximately every 50 cm down-core from inside the respective site splices. The magnetic susceptibility (X) of the total of 751 samples was normalized to wet sample mass. We also performed stepwise alternating field demagnetization (AF) of the NRM up to a maximum field of 80 mT and the results show that the characteristic remanent magnetization (ChRM) was isolated by a series of weak AF's, typically between 0-25 mT, and that a low field of 5 mT removed weak VRM. After the removal of the VRM overprint the NRM intensity of the two sites is characterized by a general positive relationship with (X). The inclination data from both sites show positive and negative inclination values with a certain degree of scattering around 0°. At Site M0059 the upper lithologic units show inclinations that vary within 10 degrees either side of the geoaxial dipole prediction (GAD) for this location. In contrast the inclinations of Site M0060 show greater variability: only a few of the samples from the lower units approach this site's GAD prediction, although the inclination values in the upper lithologic units are closer to the GAD prediction. Measurements of the temperature dependence of bulk susceptibility (k-T) indicate the presence of at three magnetic mineral phases, which display characteristic Curie point temperatures of 360-400°C, 520 and 575°C for both sites and an additional Curie temperature of 610°C for Site M0060. We have obtained four 14C radiometric age determinations from 4 different stratigraphic levels at site 59A. These dates range in age from 4100+/-100 to 810+/-60 years and allow us to correlate the directional data to the FENNOSTACK regional master curve (Snowball et al. 2007). An interval of relatively steep inclinations between approximately 18 m and 16 m depth in Site M0060 probably corresponds to the period of steep inclination experienced in Fennsocandia between 3090 and 2590 Cal. a BP, which is delimited by inclination features e and e1, respectively, in FENNOSTACK.

Trends in chlorinated hydrocarbon levels in Hudson River basin sediments.

PubMed

Bopp, R F; Chillrud, S N; Shuster, E L; Simpson, H J; Estabrooks, F D

1998-08-01

Analysis of sections from dated sediment cores were used to establish geographic distributions and temporal trends of chlorinated hydrocarbon contaminant levels in sediments from natural waters of the Hudson River basin. Radiometric dating was based primarily on the depth distribution of 137(Cs) in the cores and on the occurrence of detectable levels of 7(Be) in surface sediment samples. Eighteen sampling sites included several along the main stem of the Hudson, its major tributaries, and components of the New York/New Jersey (NY/NJ) harbor complex. Drinking-water reservoirs were sampled to place upper limits on atmospheric inputs. Core sections were analyzed for polychlorinated biphenyls (PCBs), 1,1,1-trichloro-2,2-bis(p-chlorophenyl) ethane (DDT)-derived compounds, chlordane, and dioxins. Sediment concentrations of most contaminants at most sites have decreased significantly since the mid-1960s. The data provide a basinwide perspective on major point-source inputs of PCBs to the upper Hudson River and of 2,3,7,8-tetrachlorodibenzo-p-dioxin and DDT to the lower Passaic River. Evidence was found for significant but poorly characterized sources of PCBs and chlordane to the western NY/NJ harbor, and of highly chlorinated dioxins to the upstream sites on the main stem of the Hudson. The results indicate that analysis of dated sediment samples is a most effective and efficient monitoring tool for the study of large-scale geographic and temporal trends in levels of particle-associated contaminants.

33 CFR 148.405 - What are the procedures for notifying the Commandant (CG-5) of proposed site evaluation and pre...

Code of Federal Regulations, 2010 CFR

2010-07-01

... proposed location and purpose of the activities, including: (1) Gravity and magneto-metric measurements; (2...) Sediment sampling of a limited nature using either core or grab samplers, and the specified diameter and...) Hydrographic and oceanographic measurements, including the setting of instruments; and (7) Small diameter core...

33 CFR 148.405 - What are the procedures for notifying the Commandant (CG-5) of proposed site evaluation and pre...

Code of Federal Regulations, 2011 CFR

2011-07-01

... proposed location and purpose of the activities, including: (1) Gravity and magneto-metric measurements; (2...) Sediment sampling of a limited nature using either core or grab samplers, and the specified diameter and...) Hydrographic and oceanographic measurements, including the setting of instruments; and (7) Small diameter core...

Geologic logs of geotechnical cores from the subsurface Sacramento-San Joaquin Delta, California

USGS Publications Warehouse

Maier, Katherine L.; Ponti, Daniel J.; Tinsley, John C.; Gatti, Emma; Pagenkopp, Mark

2014-01-01

This report presents and summarizes descriptive geologic logs of geotechnical cores collected from 2009–12 in the Sacramento–San Joaquin Delta, California, by the California Department of Water Resources. Graphic logs are presented for 1,785.7 ft of retained cores from 56 borehole sites throughout the Sacramento-San Joaquin Delta. Most core sections are from a depth of ~100–200 feet. Cores primarily contain mud, silt, and sand lithologies. Tephra (volcanic ash and pumice), paleosols, and gravels are also documented in some core sections. Geologic observations contained in the core logs in this report provide stratigraphic context for subsequent sampling and data for future chronostratigraphic subsurface correlations.

High-Resolution Magnetic Properties and Cyclicity of Contourites from IODP Site U1389 (West Iberian Margin)

NASA Astrophysics Data System (ADS)

Richter, C.; Adesiyun, O.; Acton, G.; Sidorovskaia, N.; Sierro, F. J.; Xuan, C.; Verosub, K. L.

2015-12-01

We present high-resolution paleomagnetic and rock magnetic results from the lower part of the APC-cored section (36 - 107 meters composite depth) of Integrated Ocean Drilling Program (IODP) Site U1389 (36º 25.515'N; 7º 16.683'W, 644 m water depth). This site was cored as part of the IODP Mediterranean Outflow Expedition to address paleoceanographic questions about the evolution of the North Atlantic Mediterranean and climate system over the past 6 million years. The recovered section at Site U1389 consists of a thick, rapidly accumulated (~40 cm/kyr), and very uniform series of contouritic sediment. Ages were obtained by tuning the planktonic foraminifer oxygen isotope data to the NGRIP ice core record. We collected rock magnetic and paleomagnetic measurements at 1-cm resolution on 71-m of U-channel samples (representing ~145 k.yr.), with the goal of extracting a high-resolution record of paleoenvironmental variability, relative geomagnetic paleointensity, and paleosecular variation. Stepwise demagnetization of the natural remanence (NRM) demonstrates the successful removal of a secondary, predominantly drill-string induced, magnetization and identification of a stable and strong primary magnetization carried by the sediment samples (average MAD calculated by principal component analysis: ~1º). Excellent behavior of the samples during alternating field demagnetization and isothermal remanent magnetization (IRM) acquisition suggest magnetite as the main carrier of magnetic remanence. Relative paleointensity estimates were determined by normalizing the NRM by the ARM, IRM, and magnetic susceptibility. Time-frequency analyses of high-resolution concentration and grain-size dependent paleomagnetic proxy data for the entire 107-m (200 k.yr.) long APC section of Site U1389 will be presented with the goal of identifying the driver of cyclic changes in the sedimentary section.

Natural gas geochemistry of sediments drilled on the 2005 Gulf of Mexico JIP cruise

USGS Publications Warehouse

Lorenson, T.D.; Claypool, G.E.; Dougherty, J.A.

2008-01-01

In April and May 2005, cores were acquired and sub-sampled for gases in lease blocks Atwater Valley 13 and 14 and Keathley Canyon 151 during deep subseafloor drilling conducted as part of the JIP study of gas hydrates in the northern Gulf of Mexico. Sample types included sediment headspace gas, free gas derived from sediment gas exsolution, and gas exsolution from controlled degassing of pressurized cores. The gases measured both onboard and in shore-based labs were nitrogen, oxygen, hydrogen sulfide, carbon dioxide, and the hydrocarbons methane through hexane. The presence of seafloor mounds, seismic anomalies, a shallow sulfate-methane interface, and similar gas compositions and isotopic compositions near the seafloor and at depth suggest an upward flux of methane at both sites. Sediment gases at the Atwater Valley sites, where seafloor mounds and adjacent sediments were cored, strongly suggest a microbial source of methane, with very little thermogenic gas input. Sediment gas from all cores contained from about 96 to 99.9% methane, with the balance composed primarily of carbon dioxide. Methane to ethane ratios were greater than 1000, and often over 10,000. Gases from cores at Keathley Canyon were similar to those at Atwater Valley, however, deeper cores from Keathley Canyon contained more ethane, propane, and butane suggesting mixing with minor concentrations thermogenic gas. The isotopic composition of methane, ethane, and carbon dioxide were measured, and ??13C values range from -84.3 to -71.5???, -65.2 to -46.8???, and -23.5 to -3.0???, respectively, all consistent with microbial gas sources, early diagenesis of organic matter and perhaps biodegradation of petroleum. The presence of deep microbial gas at these sites here and elsewhere highlights a potentially significant, predominantly microbial gas source in the northern Gulf of Mexico.

A simple and inexpensive technique for assessing microbial contamination during drilling operations

NASA Astrophysics Data System (ADS)

Friese, André; Vuillemin, Aurèle; Kallmeyer, Jens; Wagner, Dirk

2016-04-01

Exploration of the Deep Biosphere relies on drilling, which inevitably causes infiltration of drilling fluids, containing allochthonous microbes from the surface, into the core. Therefore it is absolutely necessary to trace contamination of the sediment core in order to identify uncontaminated samples for microbiological investigations. Several techniques have been used in the past, including fluorescent dyes, perfluorocarbon tracers and fluorescent microspheres. Fluorescent dyes are inexpensive and easy to analyze on-site but are sensitive to light, pH and water chemistry. Furthermore, significant sorption to clays can decrease the fluorescence signal. Perfluorocarbon tracers are chemically inert hydrophobic compounds that can be detected with high sensitivity via gas chromatography, which might be a problem for on-site analysis. Samples have to be taken immediately after core retrieval as otherwise the volatile tracer will have diffused out of the core. Microsphere tracers are small (0.2 - 0.5 μm diameter) fluorescent plastic particles that are mixed into the drilling fluid. For analysis, these particles can be extracted from the sediment sample, transferred onto a filter and quantified via fluorescence microscopy. However, they are very expensive and therefore unsuitable for deep drilling operations that need large amounts of drilling fluids. Here, we present an inexpensive contamination control approach using fluorescent pigments initially used for coloring plastics. The price of this tracer is nearly three orders of magnitude lower than conventional microsphere tracers. Its suitability for large drilling campaigns was tested at the ICDP Deep Drilling at Lake Towuti, Sulawesi, Indonesia. The tracer was diluted 1:1000 in lake water, which was used as the drilling fluid. Additionally, a plastic bag filled with 20 mL of undiluted tracer was attached to the core catcher to increase the amount of particles in the liner fluid right at the core. After core retrieval, the core was cut and the liner fluid collected. From each whole round core (WRC) that was taken for microbiological and biogeochemical analyses, small samples of 1 cc were retrieved with sterile cutoff syringes from the rim, the center and an intermediate position. After dilution and homogenization in 9 mL MilliQ water, 10 μL of the sediment slurry was transferred onto a filter membrane and particles counted via fluorescence microscopy. Additionally, particles in the liner fluid were also quantified. This allows the quantification of the amount of drilling fluid that has entered the sediment sample during drilling. The minimum detectable volume of drilling fluid was in the order of single nanoliters per cc of sediment, which is in the range of established techniques. The presented method requires only a minimum of equipment and allows rapid determination of contamination in the sediment core and an easy to handle on-site analysis at low costs. The sensitivity is in the same range as perfluorocarbon and microsphere tracer applications. Thus, it offers an inexpensive but powerful technique for contamination assessment for future drilling campaigns.

Validation of a multilevel sampling device to determine the vertical variability of chlorinated solvent in a contaminated aquifer.

PubMed

Barnier, C; Palmier, C; Atteia, O

2013-01-01

The vertical heterogeneity of contaminant concentrations in aquifers is well known, but obtaining representative samples is still a subject of debate. In this paper, the question arises from sites where numerous fully screened wells exist and there is a need to define the vertical distribution of contaminants. For this purpose, several wells were investigated with different techniques on a site contaminated with chlorinated solvents. A core-bored well shows that a tetrachloroethene (PCE) phase is sitting on and infiltrating a less permeable layer. Downstream of the cored well, the following sampling techniques were compared on fully screened wells: low flow pumping at several depths, pumping between packers and a new multilevel sampler for fully screened wells. Concerning low flow rate pumping, very low gradients were found, which may be due to the existence of vertical flow inside the well or in the gravel pack. Sampling between packers gave results comparable with the cores, separating a layer with PCE and trichloroethene from another one with cis 1,2-dichloroethene and vinyl chloride as major compounds. Detailed sampling according to pumped volume shows that even between packers, cleaning of the inter-packer volume is necessary before each sampling. Lastly, the proposed new multilevel sampler gives results similar to the packers but has the advantages of much faster sampling and a constant vertical positioning, which is fairly important for long-term monitoring in highly stratified aquifers.

Results of Physical Property Measurements Obtained during the CHIKYU Cruise CK16-01 to Hydrothermal Fields of the Middle Okinawa Trough

NASA Astrophysics Data System (ADS)

Tanikawa, W.; Masaki, Y.; Komori, S.; Torimoto, J.; Makio, M.; Ohta, Y.; Nozaki, T.; Ishibashi, J. I.; Kumagai, H.; Maeda, L.; Hamada, Y.

2016-12-01

The middle Okinawa trough, along the Ryukyu-arc on the margin of the western Pacific, fosters several hydrothermal fields. The cruise CK16-01 of D/V CHIKYU targeted the Iheya-North Field and Noho hydrothermal site. More than ten-days extensive coring was carried out with Logging While Drilling (LWD) and deployment of Kuroko cultivation apparatus between February 29th to March 17th2016. Here we present the results of the physical property measurements obtained using Chikyu's on-board laboratory. Cores were sampled among three sites where the seafloor environments were quite different: the Noho site (C9017), a site between the Natsu and Aki sites of the Iheya-North field (C9021), and the Iheya-North Aki site (C9023). Site C9017 was near the center of the hydrothermal activity, and the obtained core was limited 36 m in length and 30 % in the recovery rate. At 70 mbsf (meters below seafloor), the grain density and bulk density of the sediment reached their maxim (3.7 g/m3 and 2.7 g/cm3, respectively), while thermal conductivity reached its lowest value (0.6 W/m·K). Site C9021 yielded a 54 m core, with a core recovery rate of 50 %. Coarse pumiceous layers were found at 68 mbsf, with a hydrothermally altered layer appearing below 68 mbsf. The mean grain density value was 2.4 g/cm3 and was uniform throughout the core. The mean bulk density value of the pumiceous layers was 1.3 g/cm3, and of the hydrothermally altered layer was 2.1 g/cm3. Site C9023 was close to the active hydrothermal chimneys of the Iheya-North Aki site, and yielded 33 m of core with a core recovery rate of 16 %. Massive sulfide layers were found below 48 mbsf with grain density and bulk density values varying between 2.8-4.7 g/cm3 and 1.5-3.9 g/cm3, respectively. Magnetic susceptibility exhibited a high anomaly in a sedimented anhydrite layer found between 95 and 135 mbsf, and a high porosity and low resistivity zone was found below 150 mbsf. Together, these data from drilling cores and onboard analysis provide the first insights into the physical properties of hydrothermal fields in the Okinawa trough. This work was supported by the Council for Science, Technology and Innovation (CSTI) Cross-ministerial Strategic Innovation Promotion Program (SIP), "Next-generation technology for ocean resources exploration" (Lead agency: JAMSTEC)

Methodological issues and preliminary results from a combined sediment fingerprinting and radioisotope dating approach to explore changes in sediment sources with land-use change in the Brantian Catchment, Borneo.

NASA Astrophysics Data System (ADS)

Walsh, Rory; Higton, Sam; Marshall, Jake; Bidin, Kawi; Blake, William; Nainar, Anand

2015-04-01

This paper reports some methodological issues and early results of a project investigating the erosional impacts of land use changes (multiple selective logging and progressive, partial conversion to oil palm) over the last 25-40 years in the 600km2 Brantian river catchment in Sabah, Borneo. A combined sediment fingerprinting and radioisotope dating approach is being applied to sediment cores taken in stream hierarchical fashion across the intermediate catchment scale. Changes in sediment sources and sedimentation rates over time can be captured by changes in the relative importance of geochemical elements with depth in downstream sediment cores, which in turn can be linked to parallel changes in upstream cores by the application of unmixing models and statistical techniques. Radioisotope analysis of the sediment cores allows these changes to be dated and sedimentation rates to be estimated. Work in the neighbouring Segama catchment had successfully demonstrated the potential of such an approach in a rainforest environment (Walsh et al. 2011). The paper first describes steps taken to address methodological issues. The approach relies on taking continuous sediment cores which have aggraded progressively over time and remain relatively undisturbed and uncontaminated. This issue has been tackled (1) through careful core sampling site selection with a focus on lateral bench sites and (2) deployment of techniques such as repeat-measurement erosion bridge transects to assess the contemporary nature of sedimentation to validate (or reject) candidate sites. The issue of sediment storage and uncertainties over lag times has been minimised by focussing on sets of above- and below-confluence sites in the intermediate zone of the catchment, thus minimising sediment transit times between upstream contributing and downstream destination core sites. This focus on the intermediate zone was also driven by difficulties in finding suitable core sites in the mountainous headwaters area due to the prevalence of steep, incised channels without even narrow floodplains. Preliminary results are reported from (1) a field visit to investigate potential sampling sites in July 2014 and (2) initial analysis of a sediment core at a promising lateral bench site. Marked down-profile geochemistry changes of the core indicate a history of phases of high deposition and lateral growth of the channel caused by mobilisation of sediment linked to logging and clearance upstream. Recent channel bed degradation suggests the system has been adjusting a decline in sediment supply with forest recovery since logging in 2005, but a renewed sedimentation phase heralded by > 10 cm deposition at the site in a flood in July 2014 appears to have started linked to partial forest clearance for oil palm. These preliminary results support the ability of a combined fingerprinting and dating approach to reflect the spatial history of land-use change in a catchment undergoing disturbance. Walsh R. P. D. , Bidin K., Blake W.H., Chappell N.A., Clarke M.A., Douglas I., Ghazali R., Sayer A.M., Suhaimi J., Tych W. & Annammala K.V. (2011) Long-term responses of rainforest erosional systems at different spatial scales to selective logging and climatic change. Philosophical Transactions of the Royal Society B, 366, 3340-3353.

Diagnostic performance and safety of a three-dimensional 14-core systematic biopsy method.

PubMed

Takeshita, Hideki; Kawakami, Satoru; Numao, Noboru; Sakura, Mizuaki; Tatokoro, Manabu; Yamamoto, Shinya; Kijima, Toshiki; Komai, Yoshinobu; Saito, Kazutaka; Koga, Fumitaka; Fujii, Yasuhisa; Fukui, Iwao; Kihara, Kazunori

2015-03-01

To investigate the diagnostic performance and safety of a three-dimensional 14-core biopsy (3D14PBx) method, which is a combination of the transrectal six-core and transperineal eight-core biopsy methods. Between December 2005 and August 2010, 1103 men underwent 3D14PBx at our institutions and were analysed prospectively. Biopsy criteria included a PSA level of 2.5-20 ng/mL or abnormal digital rectal examination (DRE) findings, or both. The primary endpoint of the study was diagnostic performance and the secondary endpoint was safety. We applied recursive partitioning to the entire study cohort to delineate the unique contribution of each sampling site to overall and clinically significant cancer detection. Prostate cancer was detected in 503 of the 1103 patients (45.6%). Age, family history of prostate cancer, DRE, PSA, percentage of free PSA and prostate volume were associated with the positive biopsy results significantly and independently. Of the 503 cancers detected, 39 (7.8%) were clinically locally advanced (≥cT3a), 348 (69%) had a biopsy Gleason score (GS) of ≥7, and 463 (92%) met the definition of biopsy-based significant cancer. Recursive partitioning analysis showed that each sampling site contributed uniquely to both the overall and the biopsy-based significant cancer detection rate of the 3D14PBx method. The overall cancer-positive rate of each sampling site ranged from 14.5% in the transrectal far lateral base to 22.8% in the transrectal far lateral apex. As of August 2010, 210 patients (42%) had undergone radical prostatectomy, of whom 55 (26%) were found to have pathologically non-organ-confined disease, 174 (83%) had prostatectomy GS ≥7 and 185 (88%) met the definition of prostatectomy-based significant cancer. This is the first prospective analysis of the diagnostic performance of an extended biopsy method, which is a simplified version of the somewhat redundant super-extended three-dimensional 26-core biopsy. As expected, each sampling site uniquely contributed not only to overall cancer detection, but also to significant cancer detection. 3D14PBx is a feasible systematic biopsy method in men with PSA <20 ng/mL. © 2014 The Authors. BJU International © 2014 BJU International.

Methane Transmission and Oxidation throughout the Soil Column from Three Central Florida Sites

NASA Astrophysics Data System (ADS)

Bond-Lamberty, B. P.; Fansler, S.; Becker, K. E.; Hinkle, C. R.; Bailey, V. L.

2015-12-01

When methane (CH4) is generated in anoxic soil sites, it may be subsequently re-oxidized to carbon dioxide (CO2). Understanding the controls on, and magnitudes of, these processes is necessary to accurately represent greenhouse gas production and emission from soils. We used a laboratory incubation to examine the influence of variable conditions on methane transmission and oxidation, and identify critical reaction zones throughout the soil column. Sandy soils were sampled from three different sites at Disney Wilderness Preserve (DWP), Florida, USA: a depression marsh characterized by significant surface organic matter accumulation, a dry pine flatwood site with water intrusion and organic horizon at depth (200+ cm); and an intermediate-drainage site. Contiguous, 30-cm long cores were sampled from N=4 random boreholes at each site, from the surface to the water table (varying from 90 to 240 cm). In the lab, each core was monitored for 50 hours to quantify baseline (pretreatment) gas fluxes before injection with 6 ml CH4 (an amount commensurate with previous field collar measurements) at the base of each core. We then monitored CH4 and CO2 evolution for 100 hours after injection, calculating per-gas and total C evolution. Methane emissions spiked ~10 hours after injection for all cores, peaking at 0.001 μmol/g soil/hr, ~30x larger than pre-injection flux rates. On a C basis, CO2 emissions were orders of magnitude larger, and rose significantly after injection, with elevated rates generally sustained throughout the incubation. Cores from the depression marsh and shallower depths had significantly higher fluxes of both gases. We estimate that 99.1% of the original CH4 injection was oxidized to CO2. These findings suggest either that the methane measured in the field at DWP originates from within a few centimeters of the surface, or that it is produced in much larger quantities deeper in the profile before most is subsequently oxidized. This highlights the need for better understanding and modeling the multiple processes that result in soil-atmosphere CO2 and CH4 fluxes.

Variations in soil detachment rates after wildfire as a function of soil depth, flow properties, and root properties

USGS Publications Warehouse

Moody, John A.; Nyman, Peter

2013-01-01

Wildfire affects hillslope erosion through increased surface runoff and increased sediment availability, both of which contribute to large post-fire erosion events. Relations between soil detachment rate, soil depth, flow and root properties, and fire impacts are poorly understood and not represented explicitly in commonly used post-fire erosion models. Detachment rates were measured on intact soil cores using a modified tilting flume. The cores were mounted flush with the flume-bed and a measurement was made on the surface of the core. The core was extruded upward, cut off, and another measurement was repeated at a different depth below the original surface of the core. Intact cores were collected from one site burned by the 2010 Fourmile Canyon (FMC) fire in Colorado and from one site burned by the 2010 Pozo fire in California. Each site contained contrasting vegetation and soil types. Additional soil samples were collected alongside the intact cores and were analyzed in the laboratory for soil properties (organic matter, bulk density, particle-size distribution) and for root properties (root density and root-length density). Particle-size distribution and root properties were different between sites, but sites were similar in terms of bulk density and organic matter. Soil detachment rates had similar relations with non-uniform shear stress and non-uniform unit stream power. Detachment rates within single sampling units displayed a relatively weak and inconsistent relation to flow variables. When averaged across all clusters, the detachment rate displayed a linear relation to shear stress, but variability in soil properties meant that the shear stress accounted for only a small proportion of the overall variability in detachment rates (R2 = 0.23; R2 is the coefficient of determination). Detachment rate was related to root-length density in some clusters (R2 values up to 0.91) and unrelated in others (R2 values 2 value improved and the range of exponents became narrower by applying a multivariate regression model where boundary shear stress and root-length density were included as explanatory variables. This suggests that an erodibility parameter which incorporates the effects of both flow and root properties on detachment could improve the representation of sediment availability after wildfire.

Physical, Chemical, and Hydrologic Characteristics of Active Layer and Permafrost Soils of Arctic Polygonal Tundra, Barrow, Alaska, 2013-2016

DOE Data Explorer

Yuxin Wu; Craig Ulrich; Tim Kneafsey

2018-03-22

This dataset reports the results of physical, chemical, and hydrologic analyses of soil cores collected at the NGEE Arctic Intensive Sites 0 and 1 (Plots A, B, C, and D) during late winter seasons (April-May) from 2013 to 2016. Locations were selected across the polygonal ground to include low, flat, and high centered polygons (LCPs, FCPs and HCPs) and internal features (i.e. the trough, center, and rim). The data are depth-resolved and down to ~ 4m below ground surface for some cores. The specific depths for each core where samples were analyzed vary from core to core.

Distribution and sources of polychlorinated biphenyls in Woods Inlet, Lake Worth, Fort Worth, Texas, 2003

USGS Publications Warehouse

Besse, Richard E.; Van Metre, Peter C.; Wilson, Jennifer T.

2005-01-01

Woods Inlet is a flooded stream channel on the southern shore of Lake Worth along the western boundary of Air Force Plant 4 in Fort Worth, Texas, where elevated polychlorinated biphenyl (PCB) concentrations in sediment were detected in a previous study. In response, the U.S. Geological Survey, in cooperation with the U.S. Air Force, conducted a study in 2003 to map the extent of elevated PCB concentrations in Woods Inlet and to identify possible sources (or more specifically, source areas) of PCBs in the watershed of Woods Inlet. Three gravity cores (penetration to pre-reservoir sediment at three sites) and 17 box cores (surficial bottom sediment samples) were collected in Woods Inlet. Suspended sediment in stormwater runoff and streambed sediment were sampled in tributaries to Woods Inlet following storms. Assemblages of PCB congeners in surficial inlet sediments and suspended and streambed sediments were analyzed to indicate sources of PCBs in the inlet sediments on the basis of chemical signatures of PCBs. Woods Inlet receives runoff primarily from three tributaries: (1) Gruggs Park Creek, (2) the small unnamed creek that drains a Texas National Guard maintenance facility, called TNG Creek for this report, and (3) Meandering Road Creek. Twenty-seven of 209 possible PCB congeners were analyzed. The sum of the congeners was used as a measure of total PCB. The spatial distribution of total PCB concentrations in the inlet indicates that most PCBs are originating in the Meandering Road Creek watershed. Peak total PCB concentrations in the three gravity cores occurred at depths corresponding to sediment deposition dates of about 1960 for two of the cores and about 1980 for the third core. The magnitudes of peak total PCB concentrations in the gravity cores followed a spatial distribution generally similar to that of surficial bottom sediment concentrations. Total PCB concentrations in suspended and streambed sediment varied greatly between sites and indicated a likely source of PCBs associated with a sampling site that receives runoff from Air Force Plant 4. Three approaches to the analyses of congener assemblages indicate that PCBs in surficial bottom sediment of Woods Inlet primarily enter Lake Worth from Meandering Road Creek and that runoff from Air Force Plant 4 is a source of the PCBs in Meandering Road Creek. Although current (2003) transport of PCBs from Air Force Plant 4 to the creek is occurring, large decreases in PCB concentrations with decreasing age in two cores indicate that PCB loading to the inlet has decreased greatly since the 1960s. Because runoff entering Meandering Road Creek from some parts of Air Force Plant 4 was not measured or sampled in this study, it cannot be said with certainty that the Air Force Plant 4 site sampled is the only source of PCBs to Meandering Road Creek.

COMPARISON OF TWO FIELD SAMPLING PROCEDURES (EN CORE AND FIELD METHANOL EXTRACTION) FOR VOLATILE ORGANIC COMPOUNDS

EPA Science Inventory

In-situ Lasagna technology was recently evaluated at a contaminated site at Offutt Air Force Base. The site was contaminated with low levels (< 30 mg/kg) of volatile organic compounds (VOCs). Originally, researchers planned to use field methanol extraction for both pre- and pos...

Watershed trend analysis and water-quality assessment using bottom-sediment cores from Cheney Reservoir, south-central Kansas

USGS Publications Warehouse

Pope, Larry M.

1998-01-01

An examination of Cheney Reservoir bottom sediment was conducted in August 1997 to describe long-term trends and document the occurrence of selected constituents at concentrations that may be detrimental to aquatic organisms. Average concentrations of total phosphorus in bottom-sediment cores ranged from 94 to 674 milligrams per kilogram and were statistically related to silt- and (or) clay-size particles. Results from selected sampling sites in Cheney Reservoir indicate an increasing trend in total phosphorus concentrations. This trend is probably of nonpoint-source origin and may be related to an increase in fertilizer sales in the area, which more than doubled between 1965 and 1996, and to livestock production. Few organochlorine compounds were detected in bottom-sediment samples from Cheney Reservoir. DDT, its degradation products DDD and DDE, and dieldrin had detectable concentrations in the seven samples that were analyzed. DDT and DDD were each detected in one sample at concentrations of 1.0 and 0.65 microgram per kilogram, respectively. By far, the most frequently detected organochlorine insecticide was DDE, which was detected in all seven samples, ranging in concentration from 0.31 to 1.3 micrograms per kilogram. A decreasing trend in DDE concentrations was evident in sediment-core data from one sampling site. Dieldrin was detected in one sample from each of two sampling sites at concentrations of 0.21 and 0.22 micrograms per kilogram. Polychlorinated biphenyls were not detected in any bottom-sediment sample analyzed. Selected organophosphate, chlorophenoxy-acid, triazine, and acetanilide pesticides were analyzed in 18 bottom-sediment samples. Of the 23 pesticides analyzed, only the acetanilide herbicide metolachlor was detected (in 22 percent of the samples). Seven bottom-sediment samples were analyzed for major metals and trace elements. The median and maximum concentrations of arsenic and chromium, the maximum concentration of copper, and all concentrations of nickel in the seven samples were in the range where adverse effects to aquatic organisms occasionally occur. No time trends in trace elements were discernable in the August 1997 data.

A Composite Depth Scale for Sediments from Crevice Lake, Montana

USGS Publications Warehouse

Rosenbaum, J.G.; Skipp, G.; Honke, J.; Chapman, C.

2010-01-01

As part of a study to derive records of past environmental change from lake sediments in the western United States, a set of cores was collected from Crevice Lake, Montana, in late February and early March 2001. Crevice Lake (latitude 45.000N, longitude 110.578W, elevation 1,713 meters) lies adjacent to the Yellowstone River at the north edge of Yellowstone National Park. The lake is more than 31 meters deep and has a surface area of 7.76 hectares. The combination of small surface area and significant depth promote anoxic bottom-water conditions that preserve annual laminations (varves) in the sediment. Three types of cores were collected through the ice. The uppermost sediments were obtained in freeze cores that preserved the sediment water interface. Two sites were cored with a 5-centimeter diameter corer. Five cores were taken with a 2-meter-long percussion piston corer. The percussion core uses a plastic core liner with an inside diameter of 9 centimeters. Coring was done at two sites. Because of the relatively large diameter of the percussion cores, samples from these cores were used for a variety of analyses including pollen, charcoal, diatoms, stable isotopes, organic and inorganic carbon, elemental analyses, and magnetic properties.

Determination of subsurface fluid contents at a crude-oil spill site

USGS Publications Warehouse

Hess, K.M.; Herkelrath, W.N.; Essaid, H.I.

1992-01-01

Measurement of the fluid-content distribution at sites contaminated by immiscible fluids, including crude oil, is needed to better understand the movement of these fluids in the subsurface and to provide data to calibrate and verify numerical models and geophysical methods. A laboratory method was used to quantify the fluid contents of 146 core sections retrieved from boreholes aligned along a 120-m longitudinal transect at a crude-oil spill site near Bemidji, Minnesota, U.S.A. The 47-mm-diameter, minimally disturbed cores spanned a 4-m vertical interval contaminated by oil. Cores were frozen on site in a dry ice-alcohol bath to prevent redistribution and loss of fluids while sectioning the cores. We gravimetrically determined oil and water contents using a two-step method: (1) samples were slurried and the oil was removed by absorption onto strips of hydrophobic porous polyethylene (PPE); and (2) the samples were oven-dried to remove the water. The resulting data show sharp vertical gradients in the water and oil contents and a clearly defined oil body. The subsurface distribution is complex and appears to be influenced by sediment heterogeneities and water-table fluctuations. The center of the oil body has depressed the water-saturated zone boundary, and the oil is migrating laterally within the capillary fringe. The oil contents are as high as 0.3 cm3 cm-3, which indicates that oil is probably still mobile 10 years after the spill occurred. The thickness of oil measured in wells suggests that accumulated thickness in wells is a poor indicator of the actual distribution of oil in the subsurface. Several possible sources of error are identified with the field and laboratory methods. An error analysis indicates that adsorption of water and sediment into the PPE adds as much as 4% to the measured oil masses and that uncertainties in the calculated sample volume and the assumed oil density introduce an additional ??3% error when the masses are converted to fluid contents.

Trends in chlorinated hydrocarbon levels in Hudson River basin sediments.

PubMed Central

Bopp, R F; Chillrud, S N; Shuster, E L; Simpson, H J; Estabrooks, F D

1998-01-01

Analysis of sections from dated sediment cores were used to establish geographic distributions and temporal trends of chlorinated hydrocarbon contaminant levels in sediments from natural waters of the Hudson River basin. Radiometric dating was based primarily on the depth distribution of 137(Cs) in the cores and on the occurrence of detectable levels of 7(Be) in surface sediment samples. Eighteen sampling sites included several along the main stem of the Hudson, its major tributaries, and components of the New York/New Jersey (NY/NJ) harbor complex. Drinking-water reservoirs were sampled to place upper limits on atmospheric inputs. Core sections were analyzed for polychlorinated biphenyls (PCBs), 1,1,1-trichloro-2,2-bis(p-chlorophenyl) ethane (DDT)-derived compounds, chlordane, and dioxins. Sediment concentrations of most contaminants at most sites have decreased significantly since the mid-1960s. The data provide a basinwide perspective on major point-source inputs of PCBs to the upper Hudson River and of 2,3,7,8-tetrachlorodibenzo-p-dioxin and DDT to the lower Passaic River. Evidence was found for significant but poorly characterized sources of PCBs and chlordane to the western NY/NJ harbor, and of highly chlorinated dioxins to the upstream sites on the main stem of the Hudson. The results indicate that analysis of dated sediment samples is a most effective and efficient monitoring tool for the study of large-scale geographic and temporal trends in levels of particle-associated contaminants. Images Figure 1 Figure 3 Figure 4 Figure 5 Figure 6 Figure 7 PMID:9703496

Detachment Faulting, Serpentinization, Fluids and Life: Preliminary Results of IODP Expedition 357 (Atlantis Massif, MAR 30°N)

NASA Astrophysics Data System (ADS)

Fruh-Green, G. L.; Orcutt, B.; Green, S.; Cotterill, C.

2016-12-01

We present an overview of IODP Expedition 357, which successfully used two seabed rock drills to core 17 shallow holes at 9 sites across Atlantis Massif (Mid-Atlantic Ridge 30°N). A major goal of this expedition is to investigate serpentinization processes and microbial activity in the shallow subsurface of highly altered ultramafic and mafic sequences that have been uplifted to the seafloor along a major detachment fault zone. More than 57 m of core were recovered, with borehole penetration ranging from 1.3 to 16.4 meters below seafloor, and core recovery as high as 75% of total penetration. The cores show highly heterogeneous rock type, bulk rock chemistry and alteration that reflect multiple phases of magmatism and fluid-rock interaction within the detachment fault zone. In cores along an E-W transect of the southern wall, recovered mantle peridotites are locally intruded by gabbroic and doleritic dikes and veins. The proportion of mafic rocks are volumetrically less than the amount of mafic rocks recovered previously in the central dome at IODP Site U1309, suggesting a lower degree of melt infiltration into mantle peridotite at the ridge-transform intersection. New technologies were developed and successfully applied for the first time: (1) an in-situ sensor package and water sampling system on each seabed drill measured real-time variations in dissolved methane, oxygen, pH, oxidation reduction potential, temperature, and conductivity during drilling and took water samples after drilling; (2) a borehole plug system to seal the boreholes was successfully deployed at two sites to allow access for future sampling; and (3) delivery of chemical tracers into the drilling fluids for contamination testing. We will provide an overview of the drilling strategy and preliminary results of Expedition 357, and highlight the role of serpentinization in sustaining microbial communities in a region of active serpentinization and low temperature hydrothermal alteration.

Initial Geochemistry Data of the Lake Ohrid (Macedonia, Albania) DEEP -Site Sediment Record: The ICDP Scopsco Drilling Project

NASA Astrophysics Data System (ADS)

Francke, A.; Wagner, B.; Sulpizio, R.; Zanchetta, G.; Leicher, N.; Gromig, R.; Krastel, S.; Lindhorst, K.; Wilke, T.

2014-12-01

Ancient lakes, with sediment records spanning >1 million years, are very rare. The UNESCO World Heritage site of Lake Ohrid on the Balkans is thought to be the oldest lake in Europe. With 212 endemic species described to date, it is also a hotspot of evolution. In order to unravel the geological and evolutionary history of the lake, an international group of scientists, conducted a deep drilling campaign in spring 2013 under the umbrella of the ICDP SCOPSCO project (Scientific Collaboration on Past Speciation Conditions in Lake Ohrid). Overall, about 2,100 m of sediments were recovered from four drill sites. At the main drill site (DEEP-site) in central parts of the lake where seismic data indicated a maximum sediment fill of ca. 700 m, a total of more than 1,500 m of sediments were recovered until a penetration depth of 569 m. Currently, core opening, core description, XRF and MSCL scanning, sub-sampling (16 cm resolution), and inorganic and organic geochemical as well as sedimentological analyses of the sediment cores from the DEEP site are in progress at the University of Cologne. Previous studies at Lake Ohrid have shown that interglacial periods are characterized by high TIC and TOC contents, likely associated with high contents of calcite and organic matter in the sediments. In contrast, during glacial periods negligible TIC and low TOC contents correspond to high K counts indicating enhanced supply of clastic material. Similar patterns can be observed in the biogeochemical analyses of the subsamples and in the XRF data of the DEEP site record. Following these variations on a glacial-interglacial time scale, TIC and TOC data obtained from the subsamples and from core catcher samples indicate that the DEEP site sequence provides a 1.2 million year old continuous record of environmental and climatological variability in the Balkan Region. The age control can be further improved by first findings of macroscopic tephra horizons. Peaks in K, Sr, Zr, and magnetic susceptibility might indicate the occurrence of additional cryptotephra layers in the sediment sequence.

Heterogeneity of PTEN and ERG expression in prostate cancer on core needle biopsies: implications for cancer risk stratification and biomarker sampling.

PubMed

Shah, Rajal B; Bentley, James; Jeffery, Zach; DeMarzo, Angelo M

2015-05-01

ERG and PTEN biomarkers are increasingly being analyzed on prostate core biopsies (NBXs); ERG as a marker of clonality and number of separately arising tumor foci and PTEN for prognostic information. Yet, in patients with multiple biopsy cores positive for cancer (PCa), there is no standardized approach for interrogation of these biomarkers in terms of the number of positive cores to evaluate. A total of 194 NBX cases containing more than one positive core with cancer were evaluated for ERG overexpression and PTEN loss by immunostaining (immunohistochemistry) of all positive cores. ERG overexpression or PTEN loss in at least one cancer core was present in 111 (57%) and 69 (36%) cases respectively. ERG overexpression was significantly associated with PTEN loss (P < .0001), and PTEN loss was associated with a high Gleason score (P < .0001). Inter- and intra-tumor core staining heterogeneity for ERG overexpression occurred in 42% and 5% cases and for PTEN loss both intra- and inter-tumor core heterogeneity was 68%. PTEN staining was highly discordant between PCa sites regardless of laterality. When the Gleason score was non-uniform across PCa sites, the combination of cores showing the highest Gleason score and largest tumor volume provided the best representation of ERG overexpression (92%) and PTEN loss (98%). When grades were uniform across cancer sites, the highest tumor volume core was generally representative of ERG overexpression (90%) but was less representative for PTEN loss (76%). Our results suggest that knowledge of this heterogeneity is critical for developing optimal yet cost-effective strategies to identify these underlying molecular abnormalities. Copyright © 2015 Elsevier Inc. All rights reserved.

Concentrations of Elements in Sediments and Selective Fractions of Sediments, and in Natural Waters in Contact with Sediments from Lake Roosevelt, Washington, September 2004

USGS Publications Warehouse

Paulson, Anthony J.; Wagner, Richard J.; Sanzolone, Richard F.; Cox, Steven E.

2006-01-01

Twenty-eight composite and replicate sediment samples from 8 Lake Roosevelt sites were collected and analyzed for 10 alkali and alkaline earth elements, 2 non-metals, 20 metals, and 4 lanthanide and actinide elements. All elements were detected in all sediment samples except for silver (95 percent of the elements detected for 1,008 analyses), which was detected only in 4 samples. Sequential selective extraction procedures were performed on single composite samples from the eight sites. The percentage of detections for the 31 elements analyzed ranged from 76 percent for the first extraction fraction using a weak extractant to 93 percent for the four-acid dissolution of the sediments remaining after the third sequential selective extraction. Water samples in various degrees of contact with the sediment were analyzed for 10 alkali and alkaline earth elements, 5 non-metals, 25 metals, and 16 lanthanide and actinide elements. The filtered water samples included 10 samples from the reservoir water column at 8 sites, 32 samples of porewater, 55 samples from reservoir water overlying sediments in 8 cores from the site incubated in a field laboratory, and 24 water samples that were filtered after being tumbled with sediments from 8 sites. Overall, the concentrations of only 37 percent of the 6,776 analyses of the 121 water samples were greater than the reporting limit. Selenium, bismuth, chromium, niobium, silver, and zirconium were not detected in any water samples. The percentage of concentrations for the water samples that were above the reporting limit ranged from 14 percent for the lanthanide and actinide elements to 77 percent for the alkali and alkaline earth elements. Concentrations were greater than reporting limits in only 23 percent of the analyses of reservoir water and 29 percent of the analyses of reservoir water overlying incubation cores. In contrast, 47 and 48 percent of the concentrations of porewater and water samples tumbled with sediments, respectively, were greater than the reporting limit.

Detailed glaciochemical investigations in southern Victoria Land - a proxy climatic record

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mayewski, P.A.

1987-09-01

Local accumulation-basins in the Transantarctic Mountains possess sites suitable for recovering ice-core records that are valuable for studying climate change. These sites are also unique, because they are close to the sites of other ice-core studies and to areas with established terrestrial records. The objective is to study a snowpit in detail and collect ice cores in southern Victoria Land; this work will be similar to the investigations that the authors has conducted in south Greenland and in the Dominion Range near the Beardmore Glacier. The proposed sites are in Convoy, Asgard, and Royal Society ranges. The authors will selectmore » one site at which he will recover two ice cores, each approximately 200 to 300 meters in depth. Samples will be analyzed for major anions (chloride, sulfate, nitrate, fluoride) and cations (sodium, potassium, magnesium, ammonium, silicate), total acidity, conductivity, density, and core stratigraphy with dating provided by cross-calibration of all of the preceding plus total beta-activity, lead-210, oxygen isotopes, and microparticles. This investigation will yield a detailed record of several thousand years of glacial history, climate change, and volcanic activity for southern Victoria Land. This record will be compared to existing terrestrial records to add necessary detail and to other global ice-core records to assess global climatic change. It will also help to document volcanic activity for Mount Erebus as well as other volcanos in the Southern Hemisphere and possibly some in the Northern Hemisphere. With this record, the author will be able to evaluate the influence of volcanic and solar activity on climate as well as add greatly to the understanding of the chemistry of the global atmosphere.« less

Substrate water exchange in photosystem II depends on the peripheral proteins.

PubMed

Hillier, W; Hendry, G; Burnap, R L; Wydrzynski, T

2001-12-14

The (18)O exchange rates for the substrate water bound in the S(3) state were determined in different photosystem II sample types using time-resolved mass spectrometry. The samples included thylakoid membranes, salt-washed Triton X-100-prepared membrane fragments, and purified core complexes from spinach and cyanobacteria. For each sample type, two kinetically distinct isotopic exchange rates could be resolved, indicating that the biphasic exchange behavior for the substrate water is inherent to the O(2)-evolving catalytic site in the S(3) state. However, the fast phase of exchange became somewhat slower (by a factor of approximately 2) in NaCl-washed membrane fragments and core complexes from spinach in which the 16- and 23-kDa extrinsic proteins have been removed, compared with the corresponding rate for the intact samples. For CaCl(2)-washed membrane fragments in which the 33-kDa manganese stabilizing protein (MSP) has also been removed, the fast phase of exchange slowed down even further (by a factor of approximately 3). Interestingly, the slow phase of exchange was little affected in the samples from spinach. For core complexes prepared from Synechocystis PCC 6803 and Synechococcus elongatus, the fast and slow exchange rates were variously affected. Nevertheless, within the experimental error, nearly the same exchange rates were measured for thylakoid samples made from wild type and an MSP-lacking mutant of Synechocystis PCC 6803. This result could indicate that the MSP has a slightly different function in eukaryotic organisms compared with prokaryotic organisms. In all samples, however, the differences in the exchange rates are relatively small. Such small differences are unlikely to arise from major changes in the metal-ligand structure at the catalytic site. Rather, the observed differences may reflect subtle long range effects in which the exchange reaction coordinates become slightly altered. We discuss the results in terms of solvent penetration into photosystem II and the regional dielectric around the catalytic site.

Interstitial water studies on small core samples, Deep Sea Drilling Project, Leg 8

USGS Publications Warehouse

Manheim, F.T.; Sayles, F.L.

1971-01-01

Leg 8 sites are dominated by siliceous-calcareous biogenic oozes having depositional rates of 0.1 to 1.5 cm/1000 years. Conservative constituents of pore fluids showed, as have cores from other pelagic areas of the Pacific, insignificant or marginally significant changes with depth and location. However, in Sites 70 and 71, calcium, magnesium and strontium showed major shifts in concentration with depth. These changes appear to be related to recrystallization phenomena in skeletal debris of nannoplankton and to the relative accumulation rate of the sediments. The chemical anomalies increase relatively smoothly with depth, demonstrating the effectiveness of vertical diffusional communication, and apparent lack of bulk fluid movement, as noted in Leg 7 and other sites.

Dating young geomorphic surfaces using age of colonizing Douglas fir in southwestern Washington and northwestern Oregon, USA

USGS Publications Warehouse

Pierson, T.C.

2007-01-01

Dating of dynamic, young (<500 years) geomorphic landforms, particularly volcanofluvial features, requires higher precision than is possible with radiocarbon dating. Minimum ages of recently created landforms have long been obtained from tree-ring ages of the oldest trees growing on new surfaces. But to estimate the year of landform creation requires that two time corrections be added to tree ages obtained from increment cores: (1) the time interval between stabilization of the new landform surface and germination of the sampled trees (germination lag time or GLT); and (2) the interval between seedling germination and growth to sampling height, if the trees are not cored at ground level. The sum of these two time intervals is the colonization time gap (CTG). Such time corrections have been needed for more precise dating of terraces and floodplains in lowland river valleys in the Cascade Range, where significant eruption-induced lateral shifting and vertical aggradation of channels can occur over years to decades, and where timing of such geomorphic changes can be critical to emergency planning. Earliest colonizing Douglas fir (Pseudotsuga menziesii) were sampled for tree-ring dating at eight sites on lowland (<750 m a.s.l.), recently formed surfaces of known age near three Cascade volcanoes - Mount Rainier, Mount St. Helens and Mount Hood - in southwestern Washington and northwestern Oregon. Increment cores or stem sections were taken at breast height and, where possible, at ground level from the largest, oldest-looking trees at each study site. At least ten trees were sampled at each site unless the total of early colonizers was less. Results indicate that a correction of four years should be used for GLT and 10 years for CTG if the single largest (and presumed oldest) Douglas fir growing on a surface of unknown age is sampled. This approach would have a potential error of up to 20 years. Error can be reduced by sampling the five largest Douglas fir instead of the single largest. A GLT correction of 5 years should be added to the mean ring-count age of the five largest trees growing on the surface being dated, if the trees are cored at ground level. This correction would have an approximate error of ??5 years. If the trees are cored at about 1.4 m above the round surface (breast height), a CTG correction of 11 years should be added to the mean age of the five sampled trees (with an error of about ??7 years).

Isotope hydrology of the Chalk River Laboratories site, Ontario, Canada

USGS Publications Warehouse

Peterman, Zell; Neymark, Leonid; King-Sharp, K.J.; Gascoyne, Mel

2016-01-01

This paper presents results of hydrochemical and isotopic analyses of groundwater (fracture water) and porewater, and physical property and water content measurements of bedrock core at the Chalk River Laboratories (CRL) site in Ontario. Density and water contents were determined and water-loss porosity values were calculated for core samples. Average and standard deviations of density and water-loss porosity of 50 core samples from four boreholes are 2.73 ± 12 g/cc and 1.32 ± 1.24 percent. Respective median values are 2.68 and 0.83 indicating a positive skewness in the distributions. Groundwater samples from four deep boreholes were analyzed for strontium (87Sr/86Sr) and uranium (234U/238U) isotope ratios. Oxygen and hydrogen isotope analyses and selected solute concentrations determined by CRL are included for comparison. Groundwater from borehole CRG-1 in a zone between approximately +60 and −240 m elevation is relatively depleted in δ18O and δ2H perhaps reflecting a slug of water recharged during colder climatic conditions. Porewater was extracted from core samples by centrifugation and analyzed for major dissolved ions and for strontium and uranium isotopes. On average, the extracted water contains 15 times larger concentration of solutes than the groundwater. 234U/238U and correlation of 87Sr/86Sr with Rb/Sr values indicate that the porewater may be substantially older than the groundwater. Results of this study show that the Precambrian gneisses at Chalk River are similar in physical properties and hydrochemical aspects to crystalline rocks being considered for the construction of nuclear waste repositories in other regions.

Phytoscreening as an efficient tool to delineate chlorinated solvent sources at a chlor-alkali facility.

PubMed

Yung, Loïc; Lagron, Jérôme; Cazaux, David; Limmer, Matt; Chalot, Michel

2017-05-01

Chlorinated ethenes (CE) are among the most common volatile organic compounds (VOC) that contaminate groundwater, currently representing a major source of pollution worldwide. Phytoscreening has been developed and employed through different applications at numerous sites, where it was generally useful for detection of subsurface chlorinated solvents. We aimed at delineating subsurface CE contamination at a chlor-alkali facility using tree core data that we compared with soil data. For this investigation a total of 170 trees from experimental zones was sampled and analyzed for perchloroethene (PCE) and trichloroethene (TCE) concentrations, measured by solid phase microextraction gas chromatography coupled to mass spectrometry. Within the panel of tree genera sampled, Quercus and Ulmus appeared to be efficient biomonitors of subjacent TCE and PCE contamination, in addition to the well known and widely used Populus and Salix genera. Among the 28 trees located above the dense non-aqueous phase liquid (DNAPL) phase zone, 19 tree cores contained detectable amounts of CE, with concentrations ranging from 3 to 3000 μg L -1 . Our tree core dataset was found to be well related to soil gas sampling results, although the tree coring data were more informative. Our data further emphasized the need for choosing the relevant tree species and sampling periods, as well as taking into consideration the nature of the soil and its heterogeneity. Overall, this low-invasive screening method appeared useful to delineate contaminants at a small-scale site impacted by multiple sources of chlorinated solvents. Copyright © 2017 Elsevier Ltd. All rights reserved.

Seismic-reflection data on the eastern U.S. continental shelf acquired by M. V. L'OLONNOIS as part of the Atlantic Margin Coring Project (AMCOR) of the U.S. Geological Survey, July-September 1976

USGS Publications Warehouse

Robb, James M.

1980-01-01

In 1976 the U.S. Geological Survey undertook a program to sample the eastern United States Shelf for stratigraphic information by drilling a set of core holes. Results of this Atlantic Margin Coring Program (AMCOR) have been reported by Hathaway and others. Sites were chosen from seismic-reflection data and were reviewed by a safety panel to minimize the risk of penetrating any hydrocarbon accumulation which might lead to environmental contamination.The M-V-L'OLONNOIS, the service ship for the drilling operation, was fitted with seismic-reflection profiling equipment (listed below), to run seismic-reflection profiles before drilling began on each hole. This provided additional assurance that no closed structures would be penetrated and allowed minor adjustment with the site selection. A total of 491 km of high-resolution seismic profiles was collected on 22 sites.Equipment used (specifics for each site noted on records): Bolt Air Guns 1-40 cubic inch chambers EPC Recorder Teledyne Minisparker (last two sites) Navigation used two Internav 101 Loran-C receivers.

Properties of Subsurface Soil Cores from Four Geologic Provinces Surrounding Mars Desert Research Station, Utah: Characterizing Analog Martian Soil in a Human Exploration Scenario

NASA Technical Reports Server (NTRS)

Stoker, C. R.; Clarke, J. D. A.; Direito, S.; Foing, B.

2011-01-01

The DOMEX program is a NASA-MMAMA funded project featuring simulations of human crews on Mars focused on science activities that involve collecting samples from the subsurface using both manual and robotic equipment methods and analyzing them in the field and post mission. A crew simulating a human mission to Mars performed activities focused on subsurface science for 2 weeks in November 2009 at Mars Desert Research Station near Hanksville, Utah --an important chemical and morphological Mars analog site. Activities performed included 1) survey of the area to identify geologic provinces, 2) obtaining soil and rock samples from each province and characterizing their mineralogy, chemistry, and biology; 3) site selection and reconnaissance for a future drilling mission; 4) deployment and testing of Mars Underground Mole, a percussive robotic soil sampling device; and 5) recording and analyzing how crew time was used to accomplish these tasks. This paper summarizes results from analysis of soil cores

Third-generation site characterization: Cryogenic core collection, nuclear magnetic resonance, and electrical resistivity

NASA Astrophysics Data System (ADS)

Kiaalhosseini, Saeed

In modern contaminant hydrology, management of contaminated sites requires a holistic characterization of subsurface conditions. Delineation of contaminant distribution in all phases (i.e., aqueous, non-aqueous liquid, sorbed, and gas), as well as associated biogeochemical processes in a complex heterogeneous subsurface, is central to selecting effective remedies. Arguably, a factor contributing to the lack of success of managing contaminated sites effectively has been the limitations of site characterization methods that rely on monitoring wells and grab sediment samples. The overarching objective of this research is to advance a set of third-generation (3G) site characterization methods to overcome shortcomings of current site characterization techniques. 3G methods include 1) cryogenic core collection (C3) from unconsolidated geological subsurface to improve recovery of sediments and preserving key attributes, 2) high-throughput analysis (HTA) of frozen core in the laboratory to provide high-resolution, depth discrete data of subsurface conditions and processes, 3) resolution of non-aqueous phase liquid (NAPL) distribution within the porous media using a nuclear magnetic resonance (NMR) method, and 4) application of a complex resistivity method to track NAPL depletion in shallow geological formation over time. A series of controlled experiments were conducted to develop the C 3 tools and methods. The critical aspects of C3 are downhole circulation of liquid nitrogen via a cooling system, the strategic use of thermal insulation to focus cooling into the core, and the use of back pressure to optimize cooling. The C3 methods were applied at two contaminated sites: 1) F.E. Warren (FEW) Air Force Base near Cheyenne, WY and 2) a former refinery in the western U.S. The results indicated that the rate of core collection using the C3 methods is on the order of 30 foot/day. The C3 methods also improve core recovery and limits potential biases associated with flowing sands. HTA of frozen core was employed at the former refinery and FEW. Porosity and fluid saturations (i.e., aqueous, non-aqueous liquid, and gas) from the former refinery indicate that given in situ freezing, the results are not biased by drainage of pore fluids from the core during sample collection. At FEW, a comparison between the results of HTA of the frozen core collected in 2014 and the results of site characterization using unfrozen core, (second-generation (2G) methods) at the same locations (performed in 2010) indicate consistently higher contaminant concentrations using C 3. Many factors contribute to the higher quantification of contaminant concentrations using C3. The most significant factor is the preservation of the sediment attributes, in particular, pore fluids and volatile organic compounds (VOCs) in comparison to the unfrozen conventional sediment core. The NMR study was performed on laboratory-fabricated sediment core to resolve NAPL distribution within the porous media qualitatively and quantitatively. The fabricated core consisted of Colorado silica sand saturated with deionized water and trichloroethylene (TCE). The cores were scanned with a BRUKER small-animal scanner (2.3 Tesla, 100 MHz) at 20 °C and while the core was frozen at -25 °C. The acquired images indicated that freezing the water within the core suppressed the NMR signals of water-bound hydrogen. The hydrogen associated with TCE was still detectable since the TCE was in its liquid state (melting point of TCE is -73 °C). Therefore, qualitative detection of TCE within the sediment core was performed via the NMR scanning by freezing the water. A one-dimensional NMR scanning method was used for quantification of TCE mass distribution within the frozen core. However, the results indicated inconsistency in estimating the total TCE mass within the porous media. Downhole NMR logging was performed at the former refinery in the western U.S. to detect NAPL and to discriminate NAPL from water in the formation. The results indicated that detection of NMR signals to discriminate NAPL from water is compromised by the noise stemming from the active facilities and/or power lines passing over the site. A laboratory experiment was performed to evaluate the electrical response of unconsolidated porous media through time (30 days) while NAPL was being depleted. Sand columns (Colorado silica sand) contaminated with methyl tert-butyl ether (MTBE, a light non-aqueous phase liquid (LNAPL)) were studied. A multilevel electrode system was used to measure electrical resistivity of impacted sand by imposing alternative current. The trend of reduction in resistivity through the depth of columns over time followed depletion of LNAPL by volatilization. Finally, a field experiment was performed at the former refinery in the western U.S. to track natural losses of LNAPL over time. Multilevel systems consisting of water samplers, thermocouples, and electrodes were installed at a clean zone (background zone) and an LNAPL-impacted zone. In situ measurements of complex resistivity and temperature were taken and water sampling was performed for each depth (from 3 to 14 feet below the ground surface at one-foot spacing) within almost a year. At both locations, the results indicated decreases in apparent resistivity below the water table over time. This trend was supported by the geochemistry of the pore fluids. Overall, results indicate that application of the electrical resistivity method to track LNAPL depletion at field sites is difficult due to multiple conflicting factors affecting the geoelectrical response of LNAPL-impacted zones over time.

The Chesapeake Bay Impact Crater: An Educational Investigation for Students into the Planetary Impact Process and its Environmental Consequences

NASA Technical Reports Server (NTRS)

Levine, Arlene S.

2008-01-01

Planetary impact craters are a common surface feature of many planetary bodies, including the Earth, the Moon, Mars, Mercury, Venus, and Jupiter s moons, Ganymede and Callisto. The NASA Langley Research Center in Hampton, VA, is located about 5 km inside the outer rim of the Chesapeake Bay Impact Crater. The Chesapeake Bay Impact Crater, with a diameter of 85 km is the sixth largest impact crater on our planet. The U.S. Geological Survey (USGS), in collaboration with the NASA Langley Research Center, the Virginia Department of Environmental Quality (VDEQ), the Hampton Roads Planning District Commission (HRPDC), and the Department of Geology of the College of William and Mary (WM) drilled into and through the crater at the NASA Langley Research Center and obtained a continuous core to a depth of 2075.9 ft (632.73 meters) from the Chesapeake Bay Impact Crater. At the NASA Langley location, the granite basement depth was at 2046 ft (623.87 meters). This collaborative drilling activity provided a unique educational opportunity and ongoing educational partnership between USGS, NASA Langley and the other collaborators. NASA Langley has a decade-long, ongoing educational partnership with the Colonial Coast Council of the Girl Scouts. The core drilling and on site analysis and cataloguing of the core segments provided a unique opportunity for the Girl Scouts to learn how geologists work in the field, their tools for scientific investigation and evaluation, how they perform geological analyses of the cores in an on-site tent and learn about the formation of impact craters and the impact of impacting bodies on the sub-surface, the surface, the oceans and atmosphere of the target body. This was accomplished with a two-part activity. Girl Scout day camps and local Girl Scout troops were invited to Langley Research Center Conference Center, where more than 300 Girl Scouts, their leaders and adult personnel were given briefings by scientists and educators from the USGS, NASA, VDEQ, HRPDC and WM on the principles of geology, the formation of impact craters, the consequences of the impacting body on the atmosphere, ocean, surface and sub-surface, the geological, chemical and biological analyses of the core and the cataloguing and storage of the core segments, etc. After the briefings, the Girl Scouts visited the drilling site where they inspected the core drilling rig, examined the core samples and discussed the drilling procedures, cores and interpretation of the cores with scientists and educators from the organizations conducting the core drilling. Demonstrations at the drilling site included demonstrations of impacting objects hitting multi-colored layered mud targets at different angles of entry. The multi-colored layers of mud were instructive in mapping out the distribution of impact-ejected material around the impact crater. The presentation will include a series of photographs of the Girl Scout participating in activities at the Chesapeake Bay Impact Crater drill site, including retrieving cores from the drilling rig, inspecting the core samples and participating in the impact-crater formation demonstrations.

Data from a thick unsaturated zone underlying Oro Grande and Sheep Creek washes in the western part of the Mojave Desert, near Victorville, San Bernardino County, California

USGS Publications Warehouse

Izbicki, John A.; Clark, Dennis A.; Pimental, Maria I.; Land, Michael; Radyk, John C.; Michel, Robert L.

2000-01-01

This report presents data on the physical properties of unsaturated alluvial deposits and on the chemical and isotopic composition of soil water and soil gas collected at 12 monitoring sites in the western part of the Mojave Desert, near Victorville, California. Sites were installed using the ODEX air-hammer method. Seven sites were located in the active channels of Oro Grande and Sheep Creek Washes. The remaining five sites were located away from the active washes. Most sites were drilled to a depth of about 100 feet below land surface; two sites were drilled to the water table almost 650 feet below land surface. Drilling procedures, lithologic and geophysical data, and site construction and instrumentation are described. Core material was analyzed for water content, bulk density, water potential, particle size, and water retention. The chemical composition of leachate from almost 1,000 subsamples of cores and cuttings was determined. Water extracted from selected subsamples of cores was analyzed for tritium and the stable isotopes of oxygen and hydrogen. Water from suction-cup lysimeters and soil-gas samples also were analyzed for chemical and isotopic composition. In addition, data on the chemical and isotopic composition of bulk precipitation from five sites and on ground water from two water-table wells are reported.

Radioactivities in returned lunar materials and in meteorites

NASA Technical Reports Server (NTRS)

Fireman, E. L.

1984-01-01

Carbon 14 terrestial ages were determined with low level minicomputers and accelerator mass spectrometry on 1 Yamato and 18 Allan Hills and nearby sited meteorites. Techniques for an accelerator mass spectrometer which make C(14) measurements on small samples were developed. Also Be(10) concentrations were measured in Byrd core and Allan Hills ice samples.

Production ecology of Thuja occidentalis

Treesearch

Philip V. Hofmeyer; Robert S. Seymour; Laura S. Kenefic

2010-01-01

Equations to predict branch and tree leaf area, foliar mass, and stemwood volume were developed from 25 destructively sampled northern white-cedar (Thuja occidentalis L.) trees, a species whose production ecology has not been studied. Resulting models were applied to a large sample of 296 cored trees from 60 sites stratified across a soil gradient...

Drilling on the Moon and Mars: Developing the Science Approach for Subsurface Exploration with Human Crews

NASA Technical Reports Server (NTRS)

Stoker, C. R.; Zavaleta, J.; Bell, M.; Direto, S.; Foing, B.; Blake, D.; Kim, S.

2010-01-01

DOMEX (Drilling on the Moon and Mars in Human Exploration) is using analog missions to develop the approach for using human crews to perform science activities on the Moon and Mars involving exploration and sampling of the subsurface. Subsurface science is an important activity that may be uniquely enabled by human crews. DOMEX provides an opportunity to plan and execute planetary mission science activities without the expense and overhead of a planetary mission. Objectives: The objective of this first in a series of DOMEX missions were to 1) explore the regional area to understand the geologic context and determine stratigraphy and geologic history of various geologic units in the area. 2) Explore for and characterize sites for deploying a deep (10 m depth) drilling system in a subsequent field season. 3) Perform GPR on candidate drill sites. 4) Select sites that represent different geological units deposited in different epochs and collect soil cores using sterile procedures for mineralogical, organic and biological analysis. 5) Operate the MUM in 3 different sites representing different geological units and soil characteristics. 6) Collect rock and soil samples of sites visited and analyze them at the habitat. Results: At mission start the crew performed a regional survey to identify major geologic units that were correlated to recognized stratigraphy and regional geologic maps. Several candidate drill sites were identified. During the rest of the mission, successful GPR surveys were conducted in four locations. Soil cores were collected in 5 locations representing soils from 4 different geologic units, to depths up to 1m. Soil cores from two locations were analyzed with PCR in the laboratory. The remainder were reserved for subsequent analysis. XRD analysis was performed in the habitat and in the field on 39 samples, to assist with sample characterization, conservation, and archiving. MUM was deployed at 3 field locations and 1 test location (outside the habitat) where it operated autonomously for 2-4 hours at each site. Depths achieved ranged from 15 to 70 cm depending on the soil compressive strength and the presence and depth of subsurface indurated layers. Subsurface samples weighing 0.5 to 1 g were collected at the deepest depth encountered at each of the sites using the MUM automated sample collection system, and subsequently analyzed with XRD. Downhole inspection of holes produced by MUM with the Raman spectrometer was acquired on two of the holes and spectral features associated with selenite were identified in specific soil layers. Previously unreported fossilized remains of vertebrate fauna from the Jurassic era were discovered during our mission. Analysis of mineral biomarkers associated with this discovery are underway.

Upward extension of the Nankai accretionary prism megasplay fault into slope basin strata. Insights from drilling at IODP Expedition 338 Site C0022

NASA Astrophysics Data System (ADS)

Fabbri, O.; Oohashi, K.; Kanagawa, K.; Yamaguchi, A.

2013-12-01

Megasplay faults have been recognized on seismic reflection profiles across several convergent margins in the world. Understanding the behavior of these faults during large to very large inter-plate earthquakes is a major challenge in assessing strong-motion and tsunami hazards at or near subduction zones. One of the goals of the IODP NanTroSEIZE project is to drill across and to obtain data from the megasplay fault crossing the Nankai accretionary prism off Kii peninsula (Kumano transect), SW Japan. This fault is considered to have been activated during the 1944 Tonankai earthquake (Baba et al., 2006 ; Moore et al., 2007). Drilling and coring during IODP Expedition 316 (Expedition 316 Scientists, 2009) showed that the megasplay fault at 300 mbsf at Site C0004 consists in a 60 m thick package of fractured and brecciated rocks. Combined analysis of 3D reflection data in the vicinity of Site C0004 and core data from sites C0004 and C0008 (Strasser et al., 2009 ; Kimura et al., 2011) suggest that the lower boundary of the megasplay fault ceased activity at about 1.55 Ma while its upper boundary has remained active since about 1.95 Ma and probably 1.24 Ma. In order to determine whether the megasplay fault upper boundary crosscuts slope sediments or is sealed by them, drilling at IODP Site C0022 was carried out during Expedition 338. Two 420 m deep holes were drilled: C0022A (LWD) and C0022B (coring). At Hole C0022A, LWD resistivity images show that the 85-105.5 mbsf interval is fractured and extends above and below a ca. 1 m thick interval characterized by a low resistivity value at 100-101 mbsf. Structures observed in cores from Hole C0022B confirm LWD data. While gently dipping elsewhere, bedding in the 73-146 mbsf interval is steep, commonly exceeding 30°. This bedding dip increase may be a consequence of fault activity (folding ?). Though the low-resistivity interval at 100-101 mbsf could not be sampled at Hole C0022B (no recovery between 95.5 and 99.5 mbsf), cores immediately from above this interval show three ca. 2 cm thick zones of claystone characterized by a marked planar fabric bearing faint striations raking at about 90°. Preliminary biostratigraphic dating in Hole C0022B indicate age reversals at 80.5, 137.5 and 145.5 mbsf, suggesting reverse offset bringing older strata over younger strata. Drilling at IODP Site C0022 confirms that a branch of the megasplay fault previously cored at Expedition 316 Site C0004 extends upwards and southeastwards. The core zone of this branch lies at about 100 mbsf and is about 1 m thick. The presence of weakly foliated claystone suggests aseismic motion immediately above the core zone. The lack of samples from the core zone prevents to determine whether motion was aseismic or not.

In-situ carbon and nitrogen turnover dynamics and the role of soil functional biodiversity therein; a climate warming simulation study in Alpine ecosystems

NASA Astrophysics Data System (ADS)

Djukic, Ika

2010-05-01

Climate change affects a variety of soil properties and processes. Alpine soils take an extraordinary position in this context because of the vulnerability of mountain regions to climatic changes. We used altitudinal soil translocation to simulate the combined effects of changing climatic conditions and shifting vegetation zones in order to study short- to medium-term soil changes in the Austrian Limestone Alps. We translocated 160 soil cores from an alpine grassland site (1900 m asl) down to a sub-alpine spruce forest (1300 m asl) and a montane beech forest site (900m asl), including reference soil cores at each site to estimate artifacts arising from the method. 15N-labeled maize straw was added (1 kg/m2) to translocated and control soil cores and sampled over a period of 2 years for the analysis of δ13C and δ15N in the bulk soil and extracted phospholipid fatty acids (PLFAs). Additionally, 20 litter bags (at each of the three climatic zones) containing Fagus sylvatica or Pinus nigra litter were inserted into the soil, and decomposition was studied over a two-year period. The basic soil parameters (organic C, total N and pH) were unaffected by translocation within the observation time. Overall, decomposition of Pinus nigra litter was significantly slower compared to Fagus sylvatica, and the decomposition rate of both litter types was inversely related to elevation. The decomposition of the maize straw carbon was significantly faster in the translocated soil cores (sites at 900 and 1300 m asl) than at the original site (1900 m asl). The labelled nitrogen contents in the translocated soil cores showed just marginal differences to the soil cores at the original site. The maize straw application promptly increased the amount of bacterial and fungal PLFAs at all studied sites. Downslope translocated soil cores showed an increase in total microbial biomass and sum of bacteria. The fungal PLFA biomarker 18:2ω6,9 was slightly lower at the new (host) sites compared to the original site. The bacterial to fungal ratio of the translocated soil cores showed a rapid acclimatization to the new (host) soil conditions. Our study demonstrates that rising temperatures in Alpine ecosystems will accelerate decomposition of fresh C pools but also lead to rapid adaptation of the microbial community to the new conditions.

Anthropic changes to the biotic factor of soil formation from forests to managed grasslands along summits of the western Pyrenees Mountains, France

NASA Astrophysics Data System (ADS)

Leigh, David; Gragson, Theodore

2017-04-01

Mounting evidence indicates that highland pastures of the humid-temperate western Pyrenees were converted from mixed forests to managed grasslands thousands of years ago, as early as during the late Neolithic and Bronze age by human actions including use of fire. We observe pronounced differences between soil profiles of ancient pastures and old-growth forests in otherwise similar landscape positions. In order to test physical and chemical differences, we collected paired samples of forest versus grassland soils at four separate hillslope sites where there was a clear boundary between the two vegetation types. Animal trails were excluded from sampling. Factors of climate, topography, parent material, and time of soil formation were essentially identical in the forests and pastures of each site, but the time of soil under grassland vegetation may have varied. Each paired hillslope site included five core samples (7.6 cm diameter) from the upper 7.6 cm of the mineral soil within each vegetation type, and the A horizon thickness was recorded at each core hole site. In addition, one complete soil profile was sampled in each vegetation type at each site, making a total of 20 core samples and 4 complete profiles from each respective vegetation type. In addition, we measured the magnetic susceptibility of the mineral soil surface on two transects crossing the vegetation boundary. Core samples have been measured for bulk density, pH, plant-available nutrients, and organic matter; and tests for total carbon and nitrogen, amorphous silica, charcoal, and other forms of black carbon are ongoing. Preliminary results indicate pastured A horizons are about three times as thick as forested soils, contain more organic matter, have lower soil bulk densities, have much finer and stronger structural development of soil aggregates. These traits favor much greater infiltration and water holding capacities of the pastured soils, which we have validated with saturated hydraulic conductivity tests. Pedogenically, the pastured soils indicate that melanization processes have been much more pronounced than in the forested soils. Distinct changes in soil materials result from conversion to pasture. Significantly more black carbon (including macro-charcoal) appears to be present in the pastured soils, indicating that it plays an important role in melanization, in addition to long-term sequestration of carbon. Pastured soils contain greater contents of amorphous silica due to more rapid phytolith production from grasses as opposed to trees. Pastures register significantly higher soil magnetic susceptibility than forests, presumably from past use of fire. In essence, anthropic manipulation of the biotic factor of pedogenesis has created new soil materials, processes, and functions. Our current research involves radiocarbon and chronostratigraphy to establish rates of this anthropisation of the biotic factor.

Effective Low-Frequency Geoacoustic Properties Inferred from Measurements in the Northeast Atlantic

DTIC Science & Technology

1982-09-01

models designed to predict the nature of acoustic boundary Interaction. For five sites involving thickly sedimented bottoms, simple models are...DSDP Site 95 136. Gross descriptor! of lithology and age of the sediment profile at DSDP site is indicated on the left. Core sampling was not...during the 1890’s. Rayleigh derived the reflection coefficient for plane waves incident at arbitrary angles on the boundary separa- ting two

Airborne Petcoke Dust is a Major Source of Polycyclic Aromatic Hydrocarbons in the Athabasca Oil Sands Region.

PubMed

Zhang, Yifeng; Shotyk, William; Zaccone, Claudio; Noernberg, Tommy; Pelletier, Rick; Bicalho, Beatriz; Froese, Duane G; Davies, Lauren; Martin, Jonathan W

2016-02-16

Oil sands mining has been linked to increasing atmospheric deposition of polycyclic aromatic hydrocarbons (PAHs) in the Athabasca oil sands region (AOSR), but known sources cannot explain the quantity of PAHs in environmental samples. PAHs were measured in living Sphagnum moss (24 sites, n = 68), in sectioned peat cores (4 sites, n = 161), and snow (7 sites, n = 19) from ombrotrophic bogs in the AOSR. Prospective source samples were also analyzed, including petroleum coke (petcoke, from both delayed and fluid coking), fine tailings, oil sands ore, and naturally exposed bitumen. Average PAH concentrations in near-field moss (199 ng/g, n = 11) were significantly higher (p = 0.035) than in far-field moss (118 ng/g, n = 13), and increasing temporal trends were detected in three peat cores collected closest to industrial activity. A chemical mass-balance model estimated that delayed petcoke was the major source of PAHs to living moss, and among three peat core the contribution to PAHs from delayed petcoke increased over time, accounting for 45-95% of PAHs in contemporary layers. Petcoke was also estimated to be a major source of vanadium, nickel, and molybdenum. Scanning electron microscopy with energy-dispersive X-ray spectroscopy confirmed large petcoke particles (>10 μm) in snow at near-field sites. Petcoke dust has not previously been considered in environmental impact assessments of oil sands upgrading, and improved dust control from growing stockpiles may mitigate future risks.

Revised South China Sea spreading history based on macrostructure analysis of IODP Expedition 349 core samples and geophysical data

NASA Astrophysics Data System (ADS)

Sun, Z.; Ding, W.; Zhao, X.; Qiu, N.; Lin, J.; Li, C.

2017-12-01

In Internaltional Ocean Discovery Program (IODP) Expedition 349, four sites were drilled and cored successfully in the South China Sea (SCS). Three of them are close to the central spreading ridge (Sites U1431, U1433 and U1434), and one (Site U1435) is located on an outer rise,,providingsignificant information on the spreading history of the SCS.In order to constrain the spreading historymore accurately with the core results, we analyzed the identifiable macrostructures (over 300 fractures, veins and slickensides)from all the consolidated samples of these four drill sites. Then we made a retrograde reconstruction of the SCS spreading history with the constraints of the estimated fractures and veins, post-spreading volcanism,seismic interpretation, as well as free-air gravity and magnetic anomaly and topography analysis. Our study indicates that the spreading of the SCS experienced at least one ridge jump event and two events of ridge orientation and spreading direction adjustment, which mademagnetic anomaly orientation, ridge positionand facture zone directionskeep changing in the South China Sea. During the last spreading stage, the spreading direction was north-southward but lasted for a very short time period. The oceanic crust is wider in the eastern SCS and tapers out toward west.Due to the subductionof SCS beneath the Philippine Sea plate, the seafloor began to develop new fractures:the NWW-to EW-trending R' shear faults and the NE-trending P faultsbecame dominant faults and controlled the eruption of post-drift volcanism.

Patterns in bacterial and archaeal community structure and diversity in western Beaufort Sea sediments and waters

NASA Astrophysics Data System (ADS)

Hamdan, L. J.; Sikaroodi, M.; Coffin, R. B.; Gillevet, P. M.

2010-12-01

A culture-independent phylogenetic study of microbial communities in water samples and sediment cores recovered from the Beaufort Sea slope east of Point Barrow, Alaska was conducted. The goal of the work was to describe community composition in sediment and water samples and determine the influence of local environmental conditions on microbial populations. Archaeal and bacterial community composition was studied using length heterogeneity-polymerase chain reaction (LH-PCR) and multitag pyrosequencing (MTPS). Sediment samples were obtained from three piston cores on the slope (~1000m depth) arrayed along an east-west transect and one core from a depth of approximately 2000m. Discrete water samples were obtained using a CTD-rosette from three locations adjacent to piston core sites. Water sample were selected at three discrete depths within a vertically stratified (density) water column. The microbial community in near surface waters was distinct from the community observed in deeper stratified layers of the water column. Multidimensional scaling analysis (MDS) revealed that water samples from mid and deep stratified layers bore high similarity to communities in cores collected in close proximity. Overall, the highest diversity (bacteria and archaea) was observed in a core which had elevated methane concentration relative to other locations. Geochemical (e.g., bulk organic and inorganic carbon pools, nutrients, metabolites) and physical data (e.g. depth, water content) were used to reveal the abiotic factors structuring microbial communities. The analysis indicates that sediment water content (porosity) and inorganic carbon concentration are the most significant structuring elements on Beaufort shelf sedimentary microbial communities.

Mid-term variation of vertical distribution of acid volatile sulphide and simultaneously extracted metals in sediment cores from Lake Albufera (Valencia, Spain).

PubMed

Hernández-Crespo, Carmen; Martín, Miguel

2013-11-01

Lake Albufera is one of the most eutrophic bodies of water in Spain due to point and diffuse pollution over past decades, and its sediments are likely to be anoxic because of high organic matter flux. Hence, sulphides can play an important role in limiting the mobility of heavy metals. This study aimed to study the vertical variation of acid volatile sulphide (AVS) and simultaneously extracted metals (SEM) in sediment cores collected from Lake Albufera; other sediment characteristics, such as organic matter, biochemical oxygen, demand or total metals, were also studied. Three sites were selected, and four sampling campaigns were performed to study spatial and temporal variation as well as to obtain information regarding historical variation in the composition of sediments. AVS and SEM were analysed by the purge-and-trap method. The vertical distribution of AVS and SEM varied depending on the sampling site-concentrations of AVS and SEM were higher at sites close to mouths of inflowing channels. A decreasing trend of AVS has been found at these sites over time: In the two first samplings, AVS increased with depth reaching maximum concentrations of 40 and 21 μmol g(-1), but from then on AVS were lower and decreased with depth. SEM decreased with depth from 3 μmol g(-1) in surface layers to approximately 1 μmol g(-1) at deeper segments at these sites. However, the central site was more uniform with respect to depth as well as with time; it presented lower values of SEM and AVS (mean 0.9 and 2.0 μmol g(-1) respectively), and the maximum value of AVS (7 μmol g(-1)) was found at the top layer (0-3 cm). According to the (SEM-AVS)/fOC approach, every site, and throughout the cores, can be classified as containing nontoxic metals because the values were <130 μmol g(-1).

Speciation and isotopic composition of sedimentary sulfur in the Everglades, Florida, USA

USGS Publications Warehouse

Bates, A.L.; Spiker, E. C.; Holmes, C.W.

1998-01-01

We have studied the sulfur speciation and isotopic composition of two peat cores from Water Conservation Area 2A (WCA 2A) in the Florida Everglades. Core site E1 is affected by agricultural runoff from the Hillsboro Canal which drains the Everglades Agricultural Area; Core site U3 is distant from the canal and relatively unaffected by agricultural runoff. Depth profiles of the total sulfur content of both cores show fairly constant levels (??0.7 wt.%) below about 25-30 cm depth in Core E1 and below 40-45 cm in Core U3. Above these depths, total sulfur increases to as much as 1.52 wt.% in Core E1 and 1.74 wt.% in Core U3, suggesting that more sulfur has entered the sediments and/or that more sulfur is being retained in recent times at both sampling sites. These changes in total sulfur content with depth in Core E1 correlate with changes in total phosphorus that have been observed in other studies at core sites near the Hillsboro Canal. This correlation of total sulfur with phosphorus with depth is not seen in Core U3 located away from the canal, possibly because phosphorus is more effectively retained than sulfur in the organic sediment near the canal. Organic-sulfur (OS) concentrations are at least twice as high as the dusulfide-sulfur (DS) concentrations in the upper parts of both cores suggesting that iron is presently limiting the amount of dusulfide minerals formed in these sediments. The degree of pyritization (DOP) in the upper parts of the cores suggest that sulfide mineralization is limited by the availability of highly reactive iron during the earliest stages of diagenesis. Positive ??34S values for reduced sulfur forms in both cores indicate a relatively restricted sulfate reservoir, consistent with nearly complete reduction of the sulfate available in the sediment at any given time. Differences between the two core appear in the ??34S values for the near-surface sediments. The DS ??34S values in the upper 10.0 cm of sediment are more posotive at site E1, with a mean ??34S value of +12.9???, than at site U3, with a mean ??34S value of +2.9???. These reuslts may indicate that increased rates of organic deposition due to nutrient loading near the canal have increased the rate of sulfate reduction at the E1 site in recent times. Acid-volatile-sulfide (AVS) concentrations are lower than DS and OS concentrations by at least a factor of 10. Increasing ??34S values for AVS with increasing depth in both cores suggests ongoing reduction of a limited porewater sulfate reservoir after deposition. The disulfide and organic-sulfur ??34S values diverge from the ??34S values for AVS with depth, suggesting that most of the transformation of AVS into disulfide minerals or incorporation of sulfur into orgnaic matter occurs in the near-surface sediments. A comparison of organic-sulfur ??34S values in the dominant flora at the U3 site (sawgrass leaves and periphyton) with organic-sulfur ??34S values at the top of the U3 core indicates that there was early incorporation of an isotopically light sulfide species into the orgnaic matter.

Application of individual foraminifera Mg/Ca and δ18O analyses for paleoceanographic reconstructions in the Bay of Bengal and other active depositional environments

NASA Astrophysics Data System (ADS)

Fritz-Endres, T.; Dekens, P.; Fehrenbacher, J. S.; Spero, H. J.; Stine, A.

2017-12-01

Paleoceanographic research traditionally focuses on regions where sediment deposition is minimally affected by transport. However, sediment fans near tectonically active regions provide an opportunity to link oceanographic climate to terrestrial processes. Sediment cores recovered during IODP Expedition 354 in the Bay of Bengal include hemipelagic sections that record the history of tectonic uplift and the development of the Indian Monsoon through the last 10 Ma. Although these cores provide a unique opportunity to link marine and terrestrial climate, the complex depositional environment requires that the source of foraminifera is carefully considered before using these proxies to reconstruct oceanographic conditions. Foraminifera in Bengal Fan sediments may have been transported via turbidity currents from the northern Bay of Bengal, where the seasonal variability of SST and SSS is larger compared to the southern Bay of Bengal. We measured single Globigerinoides sacculifer Mg/Ca and δ18O from mudline samples of IODP Site U1454 (8.4°N, 85.5°E, 3721 m water depth) near the modern active channel and Site U1449 (8.4°N, 88.7°E, 3653 m water depth) far from channel activity. We compare these sites to single G. sacculifer from the core-top sample of Site 342KL (20.6°N, 90.1°E, 1256 m water depth) located on the continental shelf. Each foraminifera lives 2-4 weeks and the distribution of 60 to 80 data points reflects the seasonal range of SST and SSS at the location where the foraminifera calcified. Measurements in foraminifera from Site U1449 (away from active channel) are statistically different from the site in the northern Bay of Bengal and more consistent with local conditions. Conversely, foraminifera from the site near the active channel reflect a combined signal of local conditions recorded from the site far from channel activity and those recorded from the continental shelf. This suggests a portion of foraminifera from the active channel site have been transported from the northern Bay of Bengal. Our data show that foraminifera can be used to reconstruct SST and δ18O in this complex depositional environment, but caution must be taken when the down-core lithology indicates turbidites and possible sediment transport

Design of a multi-center immunophenotyping analysis of peripheral blood, sputum and bronchoalveolar lavage fluid in the Subpopulations and Intermediate Outcome Measures in COPD Study (SPIROMICS).

PubMed

Freeman, Christine M; Crudgington, Sean; Stolberg, Valerie R; Brown, Jeanette P; Sonstein, Joanne; Alexis, Neil E; Doerschuk, Claire M; Basta, Patricia V; Carretta, Elizabeth E; Couper, David J; Hastie, Annette T; Kaner, Robert J; O'Neal, Wanda K; Paine, Robert; Rennard, Stephen I; Shimbo, Daichi; Woodruff, Prescott G; Zeidler, Michelle; Curtis, Jeffrey L

2015-01-27

Subpopulations and Intermediate Outcomes in COPD Study (SPIROMICS) is a multi-center longitudinal, observational study to identify novel phenotypes and biomarkers of chronic obstructive pulmonary disease (COPD). In a subset of 300 subjects enrolled at six clinical centers, we are performing flow cytometric analyses of leukocytes from induced sputum, bronchoalveolar lavage (BAL) and peripheral blood. To minimize several sources of variability, we use a "just-in-time" design that permits immediate staining without pre-fixation of samples, followed by centralized analysis on a single instrument. The Immunophenotyping Core prepares 12-color antibody panels, which are shipped to the six Clinical Centers shortly before study visits. Sputum induction occurs at least two weeks before a bronchoscopy visit, at which time peripheral blood and bronchoalveolar lavage are collected. Immunostaining is performed at each clinical site on the day that the samples are collected. Samples are fixed and express shipped to the Immunophenotyping Core for data acquisition on a single modified LSR II flow cytometer. Results are analyzed using FACS Diva and FloJo software and cross-checked by Core scientists who are blinded to subject data. Thus far, a total of 152 sputum samples and 117 samples of blood and BAL have been returned to the Immunophenotyping Core. Initial quality checks indicate useable data from 126 sputum samples (83%), 106 blood samples (91%) and 91 BAL samples (78%). In all three sample types, we are able to identify and characterize the activation state or subset of multiple leukocyte cell populations (including CD4+ and CD8+ T cells, B cells, monocytes, macrophages, neutrophils and eosinophils), thereby demonstrating the validity of the antibody panel. Our study design, which relies on bi-directional communication between clinical centers and the Core according to a pre-specified protocol, appears to reduce several sources of variability often seen in flow cytometric studies involving multiple clinical sites. Because leukocytes contribute to lung pathology in COPD, these analyses will help achieve SPIROMICS aims of identifying subgroups of patients with specific COPD phenotypes. Future analyses will correlate cell-surface markers on a given cell type with smoking history, spirometry, airway measurements, and other parameters. This study was registered with ClinicalTrials.gov as NCT01969344 .

Evaluation of dredged material proposed for ocean disposal from Hudson River, New York

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gardiner, W.W.; Barrows, E.S.; Antrim, L.D.

1996-09-01

The Hudson River (Federal Project No. 41) was one of seven waterways that the U.S. Army Corps of Engineers-New York District (USACE-NYD) requested the Battelle Marine Sciences Laboratory (MSL) to sample and evaluate for dredging and disposal in March 1994. Sediment samples were collected from the Hudson River. Tests and analyses were conducted on Hudson River sediment core samples. The evaluation of proposed dredged material from the Hudson River included bulk sediment chemical analyses, chemical analyses of site water and elutriate, water-column and benthic acute toxicity tests, and bioaccumulation studies. Individual sediment core samples collected from Hudson River were analyzedmore » for grain size, moisture content, and total organic carbon (TOC). A composite sediment sample, representing the entire area proposed for dredging, was analyzed for bulk density, specific gravity, metals, chlorinated pesticides, polychlorinated biphenyl (PCB) congeners, polynuclear aromatic hydrocarbons (PAH), and 1,4-dichlorobenzene. Site water and elutriate water, prepared from the suspended-particulate phase (SPP) of Hudson River sediment, were analyzed for metals, pesticides, and PCBS. Water-column or SPP toxicity tests were performed with three species. Benthic acute toxicity tests were performed. Bioaccumulation tests were also conducted.« less

Accelerated gravity testing of aquitard core permeability and implications at formation and regional scale

NASA Astrophysics Data System (ADS)

Timms, W. A.; Crane, R.; Anderson, D. J.; Bouzalakos, S.; Whelan, M.; McGeeney, D.; Rahman, P. F.; Guinea, A.; Acworth, R. I.

2015-03-01

Evaluating the possibility of leakage through low permeability geological strata is critically important for sustainable water supplies, the extraction of fuels from strata such as coal beds, and the confinement of waste within the earth. The current work demonstrates that relatively rapid and reliable hydraulic conductivity (K) measurement of aquitard cores using accelerated gravity can inform and constrain larger scale assessments of hydraulic connectivity. Steady state fluid velocity through a low K porous sample is linearly related to accelerated gravity (g-level) in a centrifuge permeameter (CP) unless consolidation or geochemical reactions occur. The CP module was custom designed to fit a standard 2 m diameter geotechnical centrifuge (550 g maximum) with a capacity for sample dimensions of 30 to 100 mm diameter and 30 to 200 mm in length, and a maximum total stress of ~2 MPa at the base of the core. Formation fluids were used as influent to limit any shrink-swell phenomena which may alter the permeability. Vertical hydraulic conductivity (Kv) results from CP testing of cores from three sites within the same regional clayey silt formation varied (10-7 to 10-9 m s-1, n = 14). Results at one of these sites (1.1 × 10-10 to 3.5 × 10-9 m s-1, n = 5) that were obtained in < 24 h were similar to in situ Kv values (3 × 10-9 m s-1) from pore pressure responses over several weeks within a 30 m clayey sequence. Core scale and in situ Kv results were compared with vertical connectivity within a regional flow model, and considered in the context of heterogeneity and preferential flow paths at site and formation scale. More reliable assessments of leakage and solute transport though aquitards over multi-decadal timescales can be achieved by accelerated core testing together with advanced geostatistical and numerical methods.

Gains in efficiency and scientific potential of continental climate reconstruction provided by the LRC LacCore Facility, University of Minnesota

NASA Astrophysics Data System (ADS)

Noren, A.; Brady, K.; Myrbo, A.; Ito, E.

2007-12-01

Lacustrine sediment cores comprise an integral archive for the determination of continental paleoclimate, for their potentially high temporal resolution and for their ability to resolve spatial variability in climate across vast sections of the globe. Researchers studying these archives now have a large, nationally-funded, public facility dedicated to the support of their efforts. The LRC LacCore Facility, funded by NSF and the University of Minnesota, provides free or low-cost assistance to any portion of research projects, depending on the specific needs of the project. A large collection of field equipment (site survey equipment, coring devices, boats/platforms, water sampling devices) for nearly any lacustrine setting is available for rental, and Livingstone-type corers and drive rods may be purchased. LacCore staff can accompany field expeditions to operate these devices and curate samples, or provide training prior to device rental. The Facility maintains strong connections to experienced shipping agents and customs brokers, which vastly improves transport and importation of samples. In the lab, high-end instrumentation (e.g., multisensor loggers, high-resolution digital linescan cameras) provides a baseline of fundamental analyses before any sample material is consumed. LacCore staff provide support and training in lithological description, including smear-slide, XRD, and SEM analyses. The LRC botanical macrofossil reference collection is a valuable resource for both core description and detailed macrofossil analysis. Dedicated equipment and space for various subsample analyses streamlines these endeavors; subsamples for several analyses may be submitted for preparation or analysis by Facility technicians for a fee (e.g., carbon and sulfur coulometry, grain size, pollen sample preparation and analysis, charcoal, biogenic silica, LOI, freeze drying). The National Lacustrine Core Repository now curates ~9km of sediment cores from expeditions around the world, and stores metadata and analytical data for all cores processed at the facility. Any researcher may submit sample requests for material in archived cores. Supplies for field (e.g., polycarbonate pipe, endcaps), lab (e.g., sample containers, pollen sample spike), and curation (e.g., D-tubes) are sold at cost. In collaboration with facility users, staff continually develop new equipment, supplies, and procedures as needed in order to provide the best and most comprehensive set of services to the research community.

Soil Sampling Techniques For Alabama Grain Fields

NASA Technical Reports Server (NTRS)

Thompson, A. N.; Shaw, J. N.; Mask, P. L.; Touchton, J. T.; Rickman, D.

2003-01-01

Characterizing the spatial variability of nutrients facilitates precision soil sampling. Questions exist regarding the best technique for directed soil sampling based on a priori knowledge of soil and crop patterns. The objective of this study was to evaluate zone delineation techniques for Alabama grain fields to determine which method best minimized the soil test variability. Site one (25.8 ha) and site three (20.0 ha) were located in the Tennessee Valley region, and site two (24.2 ha) was located in the Coastal Plain region of Alabama. Tennessee Valley soils ranged from well drained Rhodic and Typic Paleudults to somewhat poorly drained Aquic Paleudults and Fluventic Dystrudepts. Coastal Plain s o i l s ranged from coarse-loamy Rhodic Kandiudults to loamy Arenic Kandiudults. Soils were sampled by grid soil sampling methods (grid sizes of 0.40 ha and 1 ha) consisting of: 1) twenty composited cores collected randomly throughout each grid (grid-cell sampling) and, 2) six composited cores collected randomly from a -3x3 m area at the center of each grid (grid-point sampling). Zones were established from 1) an Order 1 Soil Survey, 2) corn (Zea mays L.) yield maps, and 3) airborne remote sensing images. All soil properties were moderately to strongly spatially dependent as per semivariogram analyses. Differences in grid-point and grid-cell soil test values suggested grid-point sampling does not accurately represent grid values. Zones created by soil survey, yield data, and remote sensing images displayed lower coefficient of variations (8CV) for soil test values than overall field values, suggesting these techniques group soil test variability. However, few differences were observed between the three zone delineation techniques. Results suggest directed sampling using zone delineation techniques outlined in this paper would result in more efficient soil sampling for these Alabama grain fields.

Geochemical data for mercury, methylmercury, and other constituents in sediments from Englebright Lake, California, 2002

USGS Publications Warehouse

Alpers, Charles N.; Hunerlach, Michael P.; Marvin-DePasquale, Mark C.; Antweiler, Ronald C.; Lasorsa, Brenda K.; De Wild, John F.; Snyder, Noah P.

2006-01-01

Deep coring penetrated the full thickness of material deposited after 1940 at six locations in the reservoir; the cores reached a maximum depth of 32.8 meters below the reservoir floor. At the three deep coring sites closest to Englebright Dam, concentrations of HgT (dry basis) were consistently in the range of 100 to 500 ng/g (nanogram per gram), in sediment dominantly of silt size (median grain size of 0.004 to 0.063 mm [millimeter]). At the deep coring sites located farther upstream, the upper parts of the profile had lower concentrations of HgT, generally ranging from 2 to 100 ng/g, in sediment dominantly of sand size (median grain size from 0.063 to 2 mm). The lower part of the vertical profiles at three upstream coring sites had higher concentrations of HgT than the upper and middle parts of these profiles, and had finer median grain size. The highest median concentration of MeHg (1.1 ng/g) was in the top 2 cm (centimeter) of the shallow box cores. This vertical interval also had the highest value of the ratio of MeHg to HgT, 0.41 percent. Median concentrations of MeHg and median values of MeHg/HgT decreased systematically with depth from 0-4 to 4-8 to 8-12 cm in the shallow cores. However, similar systematic decreases were not observed at the meter scale in the deep cores of the MEM (MEthylMercury) series. The overall median of the ratio MeHg/HgT in the deep cores was 0.25 percent, not much less than the overall median value for the shallow cores (0.33 percent). Mercury-203 radiotracer divalent inorganic mercury (203Hg(II)) was used to determine microbial mercury-methylation potential rates for 11 samples collected from three reservoir locations and various depths in the sediment profile. For the five shallow mercury-methylation subsamples, ancillary geochemical parameters were assayed, including microbial sulfate reduction rates, sulfur speciation (sediment acid volatile sulfide, total reduced sulfur, and pore-water sulfate), iron speciation (sediment acid extractable iron(II), amorphous iron(III), crystalline iron(III) and pore-water iron(II)), pore-water chloride and dissolved organic carbon, and pH, oxidation-reduction potential (Eh) and whole-sediment organic content. The highest potential rates of microbial mercury methylation were measured in shallow (0 to 8 cm depth) sediments (5 to 30 nanograms of mercury per gram dry sediment per day), whereas potential rates for subsamples collected from depths greater than 500 cm were consistently below the detection limit of the radiotracer method (< 0.02 nanogram of mercury per gram dry sediment per day). Chemical analyses of trace and major elements in bed sediment are presented for 202 samples from deep cores from five locations in Englebright Lake. The mean values and standard deviations for selected trace elements were as follows (in micrograms per gram): antimony, 2.4 ? 1.6; arsenic, 69 ? 48; chromium, 134 ? 23; lead, 33 ? 25; and nickel, 87 ? 24. Concentrated samples of heavy-mineral grains, prepared using nine large-volume composite samples from

Analysis of Monolith Cores from an Engineering Scale Demonstration of a Prospective Cast Stone Process

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crawford, C. L.; Cozzi, A. D.; Hill, K. A.

2016-06-01

The primary disposition path of Low Activity Waste (LAW) at the DOE Hanford Site is vitrification. A cementitious waste form is one of the alternatives being considered for the supplemental immobilization of the LAW that will not be treated by the primary vitrification facility. Washington River Protection Solutions (WRPS) has been directed to generate and collect data on cementitious or pozzolanic waste forms such as Cast Stone. This report documents the coring and leach testing of monolithic samples cored from an engineering-scale demonstration (ES Demo) with non-radioactive simulants. The ES Demo was performed at SRNL in October of 2013 usingmore » the Scaled Continuous Processing Facility (SCPF) to fill an 8.5 ft. diameter x 3.25 ft. high container with simulated Cast Stone grout. The Cast Stone formulation was chosen from the previous screening tests. Legacy salt solution from previous Hanford salt waste testing was adjusted to correspond to the average LAW composition generated from the Hanford Tank Waste Operation Simulator (HTWOS). The dry blend materials, ordinary portland cement (OPC), Class F fly ash, and ground granulated blast furnace slag (GGBFS or BFS), were obtained from Lafarge North America in Pasco, WA. In 2014 core samples originally obtained approximately six months after filling the ES Demo were tested along with bench scale molded samples that were collected during the original pour. A latter set of core samples were obtained in late March of 2015, eighteen months after completion of the original ES Demo. Core samples were obtained using a 2” diameter x 11” long coring bit. The ES Demo was sampled in three different regions consisting of an outer ring, a middle ring and an inner core zone. Cores from these three lateral zones were further segregated into upper, middle and lower vertical segments. Monolithic core samples were tested using the Environmental Protection Agency (EPA) Method 1315, which is designed to provide mass transfer rates (release rates) of inorganic analytes contained in monolithic material under diffusion controlled release conditions as a function of leaching time. Compressive strength measurements and drying tests were also performed on the 2015 samples. Leachability indices reported are based on analyte concentrations determined from dissolution of the dried samples.« less

In-situ stress measurements using core-based methods in the vicinity of Nojima fault.

NASA Astrophysics Data System (ADS)

Yano, S.; Sugimoto, T.; Lin, W.; Lin, A.

2017-12-01

In the cycle of repeatable occurrence of earthquakes, stress accumulates at the source fault and its surroundings in an interseismic period until the next earthquake, and releases abruptly when the earthquake occurs. However, it is almost unknown that the quantitative relationship between stress change and earthquake occurrence. Hence, in order to improve our understanding on the mechanisms of the outbreak of earthquakes, it is important to grasp the stress states in the vicinity of the source fault and to evaluate its change over time. In this study, we carried out in-situ stress measurements by using core samples obtained from a scientific drilling penetrated through the Nojima fault which ruptured and caused the Hyogo-ken Nanbu earthquake, Japan in 1995. Our stress measurements were conducted from 2016 to 2017 when is 22 years after the earthquake. For this purpose, we applied the Anelastic Strain Recovery (ASR) method and Diametrical Core Deformation Analysis (DCDA). First, we measure the ASR change with time of the cores from stress releasing soon and calculate three-dimensional principal in-situ stress orientations and magnitudes from the ASR data. In this study, to ensure the enough amount of ASR, we conducted the measurements using the cores collected within a short time (e.g. 2.5 - 3.5 hours) after stress releasing by drilling at an on-site laboratory in the drilling site in Awaji island, Japan. The site locates at the south-west part of the Nojima fault. In DCDA, we measure the core diameters in all (360°) azimuths, and determine difference of the two horizontal principal stresses and their orientation by using the other cores as those used for ASR. DCDA experiments were conducted indoor and after a long time passed from core collecting. Lithology of all the core samples we used for ASR and DCDA are granite, and 19 and 7 cores were used for ASR and DCDA, respectively. As a result, it was found that the stress state in the depth range of 500 - 560 m and around 822 m were of normal faulting stress regime and that in 711 - 730 m was strike slip faulting type. As mentioned above, we have obtained a data set of the current state of stress around Nojima fault using the two core-based stress measurement methods. In future, we will determine the core orientations and restore the directions of the principal stress axes to the geologic coodinates.

Tank Vapor Sampling and Analysis Data Package for Tank 241-Z-361 Sampled 09/22/1999 and 09/271999 During Sludge Core Removal

DOE Office of Scientific and Technical Information (OSTI.GOV)

VISWANATH, R.S.

This data package presents sampling data and analytical results from the September 22 and 27, 1999, headspace vapor sampling of Hanford Site Tank 241-2-361 during sludge core removal. The Lockheed Martin Hanford Corporation (LMHC) sampling team collected the samples and Waste Management Laboratory (WML) analyzed the samples in accordance with the requirements specified in the 241-2361 Sludge Characterization Sampling and Analysis Plan, (SAP), HNF-4371, Rev. 1, (Babcock and Wilcox Hanford Corporation, 1999). Six SUMMA{trademark} canister samples were collected on each day (1 ambient field blank and 5 tank vapor samples collected when each core segment was removed). The samples weremore » radiologically released on September 28 and October 4, 1999, and received at the laboratory on September 29 and October 6, 1999. Target analytes were not detected at concentrations greater than their notification limits as specified in the SAP. Analytical results for the target analytes and tentatively identified compounds (TICs) are presented in Section 2.2.2 starting on page 2B-7. Three compounds identified for analysis in the SAP were analyzed as TICs. The discussion of this modification is presented in Section 2.2.1.2.« less

Summary of hydraulic properties of the Floridan Aquifer system in coastal Georgia and adjacent parts of South Carolina and Florida

USGS Publications Warehouse

Clarke, John S.; Leeth, David C.; Taylor-Harris, DaVette; Painter, Jaime A.; Labowski, James L.

2005-01-01

Hydraulic-property data for the Floridan aquifer system and equivalent clastic sediments in a 67-county area of coastal Georgia and adjacent parts of South Carolina and Florida were evaluated to provide data necessary for development of ground-water flow and solute-transport models. Data include transmissivity at 324 wells, storage coefficient at 115 wells, and vertical hydraulic conductivity of 72 core samples from 27 sites. Hydraulic properties of the Upper Floridan aquifer vary greatly in the study area due to the heterogeneity (and locally to anisotropy) of the aquifer and to variations in the degree of confinement provided by confining units. Prominent structural features in the areathe Southeast Georgia Embayment, the Beaufort Arch, and the Gulf Troughinfluence the thickness and hydraulic properties of the sediments comprising the Floridan aquifer system. Transmissivity of the Upper Floridan aquifer and equivalent updip units was compiled for 239 wells and ranges from 530 feet squared per day (ft2/d) at Beaufort County, South Carolina, to 600,000 ft2/d in Coffee County, Georgia. In carbonate rock settings of the lower Coastal Plain, transmissivity of the Upper Floridan aquifer generally is greater than 20,000 ft2/d, with values exceeding 100,000 ft2/d in the southeastern and southwestern parts of the study area (generally coinciding with the area of greatest aquifer thickness). Transmissivity of the Upper Floridan aquifer generally is less than 10,000 ft2/d in and near the upper Coastal Plain, where the aquifer is thin and consists largely of clastic sediments, and in the vicinity of the Gulf Trough, where the aquifer consists of low permeability rocks and sediments. Large variability in the range of transmissivity in Camden and Glynn Counties, Georgia, and Nassau County, Florida, demonstrates the anisotropic distribution of hydraulic properties that may result from fractures or solution openings in the carbonate rocks. Storage coefficient of the Upper Floridan aquifer was compiled for 106 wells and ranges from about 0.00004 at Beaufort County, South Carolina, to 0.04 in Baker County, Florida. Transmissivity of the Lower Floridan aquifer and equivalent updip clastic units was compiled for 53 wells and ranges from about 170 ft2/d in Barnwell County, South Carolina, to about 43,000 ft2/d in Camden County, Georgia. Transmissivity of the Lower Floridan aquifer is greatest where the aquifer is thickest in southeastern Georgia and northeastern Floridawhere estimates are greater than 10,000 ft2/d; at one well in southeastern Georgia transmissivity was estimated to be as high as 200,000 ft2/d. Storage-coefficient data for the Lower Floridan aquifer are limited to three estimates in Barnwell and Allendale Counties, South Carolina, and to estimates determined from six multi-aquifer tests in Duval County, Florida. In the South Carolina tests, storage coefficient ranges from 0.0003 to 0.0004; this range is indicative of a confined aquifer. The storage coefficient for the combined Upper and Lower Floridan wells in Duval County, Florida, ranges from 0.00002 to 0.02. Vertical hydraulic conductivity was compiled from core samples collected at 27 sites. For the Upper Floridan confining unit, values from 39 core samples at 17 sites range from 0.0002 to 3 feet per day (ft/d). For the Lower Floridan confining unit, values from 10 core samples at 9 sites range from about 0.000004 to 0.16 ft/d. Vertical hydraulic conductivity of the Upper Floridan aquifer was compiled from 16 core samples at five sites, mostly in the Brunswick, Georgia, area and values range from 0.00134 to 160.4 ft/d. Vertical hydraulic conductivity for the semiconfining unit separating the upper and lower water-bearing zones of the Upper Floridan at Brunswick, Georgia, compiled from 6 core samples at three sites ranges from 0.000008 to 0.000134 ft/d. The vertical hydraulic conductivity of the Lower Floridan aquifer in a core sample from a well at Brunswick, G

Preserving Geological Samples and Metadata from Polar Regions

NASA Astrophysics Data System (ADS)

Grunow, A.; Sjunneskog, C. M.

2011-12-01

The Office of Polar Programs at the National Science Foundation (NSF-OPP) has long recognized the value of preserving earth science collections due to the inherent logistical challenges and financial costs of collecting geological samples from Polar Regions. NSF-OPP established two national facilities to make Antarctic geological samples and drill cores openly and freely available for research. The Antarctic Marine Geology Research Facility (AMGRF) at Florida State University was established in 1963 and archives Antarctic marine sediment cores, dredge samples and smear slides along with ship logs. The United States Polar Rock Repository (USPRR) at Ohio State University was established in 2003 and archives polar rock samples, marine dredges, unconsolidated materials and terrestrial cores, along with associated materials such as field notes, maps, raw analytical data, paleomagnetic cores, thin sections, microfossil mounts, microslides and residues. The existence of the AMGRF and USPRR helps to minimize redundant sample collecting, lessen the environmental impact of doing polar field work, facilitates field logistics planning and complies with the data sharing requirement of the Antarctic Treaty. USPRR acquires collections through donations from institutions and scientists and then makes these samples available as no-cost loans for research, education and museum exhibits. The AMGRF acquires sediment cores from US based and international collaboration drilling projects in Antarctica. Destructive research techniques are allowed on the loaned samples and loan requests are accepted from any accredited scientific institution in the world. Currently, the USPRR has more than 22,000 cataloged rock samples available to scientists from around the world. All cataloged samples are relabeled with a USPRR number, weighed, photographed and measured for magnetic susceptibility. Many aspects of the sample metadata are included in the database, e.g. geographical location, sample description, collector, rock age, formation, section location, multimedia images as well structural data, field observations, logistics, surface features, etc. The metadata are entered into a commercial, museum based database called EMu. The AMGRF houses more than 25,000m of deep-sea cores and drill cores as well as nearly 3,000 meters of rotary cored geological material from Antarctica. Detailed information on the sediment cores including location, sediment composition are available in cruise reports posted on the AMGRF web-site. Researchers may access the sample collections through the online websites (http://www-bprc.mps.ohio-state.edu/emuwebusprr and http://www.arf.fsu.edu). Searches may be done using multiple search terms or by use of the mapping feature. The on-line databases provide an essential resource for proposal preparation, pilot studies and other sample based research that should make fieldwork more efficient.

FIELD TRAPPING OF SUBSURFACE VAPOR PHASE PETROLEUM HYDROCARBONS

EPA Science Inventory

Soil gas samples from intact soil cores were collected on adsorbents at a field site, then thermally desorbed and analyzed by laboratory gas chromatography (GC). ertical concentration profiles of predominant vapor phase petroleum hydrocarbons under ambient conditions were obtaine...

First Results of Nitrate and its Stable Isotopic Composition in an Ice Core from Dome A, East Antarctica

NASA Astrophysics Data System (ADS)

Jiang, S.

2017-12-01

During the 21st Chinese Antarctic Research Expedition in 2004/2005 austral summer, a 109.91 m ice core (hereafter DA2005 core) was recovered at the site about 300 m away from the summit of Dome A. The top 100.42 m was analyzed for major chemical impurities and isotopic composition of nitrate. Dating was based on the volcanic stratigraphy and average annual accumulation rate. Results showed that the analyzed 100.42 m part of the core covers the last 2840 years before present, from 840 BC to AD 1998. Nitrate concentration in the DA2005 core varies between 2.86 μg kg-1 and 30.75 μg kg-1 throughout the 2840 years, with the mean concentration of 11.84 µg kg-1. Comparisons with previous Antarctic ice core nitrate records show that the DA2005 core has the lowest mean concentration of nitrate, which is consistent with the lowest accumulation rate at Dome A among these sampling sites. Decreased nitrate concentration during the period of Little Ice Age (AD 1500-1900) is observed in the DA2005 core. The δ15N(NO3-) values vary between 235.4 ‰ and 279.4 ‰, which suggest strong 15N enrichment in the DA2005 core. The sample covering the most recent time period (AD 1695-1838) has the lowest δ15N(NO3-) value. The Δ17O(NO3-) values span from 28.9 ‰ to 31.4 ‰, which is among the range ever observed. An increasing trend is seen during the period of AD 1225-1838, which corresponds to the time period when nitrate concentration remains low. The maximum Δ17O(NO3-) value occurs in the period AD 1695-1838, and the minimum value occurs in the period AD 62-166.

Scientific results of the Second Gas Hydrate Drilling Expedition in the Ulleung Basin (UBGH2)

USGS Publications Warehouse

Ryu, Byong-Jae; Collett, Timothy S.; Riedel, Michael; Kim, Gil-Young; Chun, Jong-Hwa; Bahk, Jang-Jun; Lee, Joo Yong; Kim, Ji-Hoon; Yoo, Dong-Geun

2013-01-01

As a part of Korean National Gas Hydrate Program, the Second Ulleung Basin Gas Hydrate Drilling Expedition (UBGH2) was conducted from 9 July to 30 September, 2010 in the Ulleung Basin, East Sea, offshore Korea using the D/V Fugro Synergy. The UBGH2 was performed to understand the distribution of gas hydrates as required for a resource assessment and to find potential candidate sites suitable for a future offshore production test, especially targeting gas hydrate-bearing sand bodies in the basin. The UBGH2 sites were distributed across most of the basin and were selected to target mainly sand-rich turbidite deposits. The 84-day long expedition consisted of two phases. The first phase included logging-while-drilling/measurements-while-drilling (LWD/MWD) operations at 13 sites. During the second phase, sediment cores were collected from 18 holes at 10 of the 13 LWD/MWD sites. Wireline logging (WL) and vertical seismic profile (VSP) data were also acquired after coring operations at two of these 10 sites. In addition, seafloor visual observation, methane sensing, as well as push-coring and sampling using a Remotely Operated Vehicle (ROV) were conducted during both phases of the expedition. Recovered gas hydrates occurred either as pore-filling medium associated with discrete turbidite sand layers, or as fracture-filling veins and nodules in muddy sediments. Gas analyses indicated that the methane within the sampled gas hydrates is primarily of biogenic origin. This paper provides a summary of the operational and scientific results of the UBGH2 expedition as described in 24 papers that make up this special issue of the Journal of Marine and Petroleum Geology.

Fossil ostracodes of continental shelf cores at IODP Site U1354 (Expedition 317)

NASA Astrophysics Data System (ADS)

Kusunoki, S.; Ohi, T.; Kawagata, S.; Ishida, K.; Shipboard Scientific Party, E.

2010-12-01

Integrated Ocean Drilling Program (IODP) Expedition 317 was devoted to understanding the relative importance of global sea level (eustasy) versus local tectonic and sedimentary processes in controlling continental margin sedimentary cycles. The expedition recovered sediments from the Eocene to recent period, with a particular focus on the sequence stratigraphy of the late Miocene to recent, when global sea level change was dominated by glacioeustasy. Drilling in the Canterbury Basin, on the eastern margin of the South Island of New Zealand took advantage of high rates of Neogene sediment supply, which preserved a high-frequency (0.1-0.5 m.y.) record of depositional cyclicity. Ostracodes are crustaceans that widely inhabit marine, brackish, and non-marine environments. Shallow marine species have more restricted habitat and respond sensitively to environmental changes. Therefore they are a useful tool for high-resolution analyses of paleoenvironmental changes. We study samples older than ~1.0 Ma from Site U1354, which is in an intermediate position within the three shelf sites transect of Expedition 317. Quaternary to early Pliocene (~4.5 Ma) sediments were cored in this site with best core recovery (81%) among the shelf sites. The period from the Pliocene to Pleistocene is known for distinct paleoclimatic changes, from the intensive warming at around 3.5 Ma, to the cooling stage starting from 2.75 Ma. We expect that high-resolution analyses of fossil ostracode assemblages reveal detailed sea level and paleoceanographic changes on the continental shelf of the Canterbury Basin caused by global climate changes. Samples were examined at 1.5 m depth intervals. Samples of ~20 cc were freeze-dried and washed through a 63 µm opening sieve. The residues were dried and then divided into aliquot parts containing around 200 specimens using a sample splitter. All individual ostracodes were picked from residues coarser than 125 µm. Valves and carapaces were counted as one specimen. Well preserved ostracodes were found abundantly between the interval of 75 to 100 m (1 to 1.5 Ma) below the sea floor, although many of them are juvenile sized 125-250 µm. The numbers of ostracode specimens in each sample are from 20 to around 1100 per 20 cc and increase upward.

Contribution of soil fauna to soil functioning in degraded environments: a multidisciplinary approach

NASA Astrophysics Data System (ADS)

Gargiulo, Laura; Mele, Giacomo; Moradi, Jabbar; Kukla, Jaroslav; Jandová, Kateřina; Frouz, Jan

2016-04-01

The restoration of the soil functions is essential for the recovery of highly degraded sites and, consequently, the study of the soil fauna role in the soil development in such environments has great potential from a practical point of view. The soils of the post-mining sites represent unique models for the study of the natural ecological succession because mining creates similar environments characterized by the same substrate, but by different ages according to the year of closure of mines. The aim of this work was to assess the contribution of different species of macrofauna on the evolution of soil structure and on the composition and activity of the microbial community in soil samples subjected to ecological restoration or characterized by spontaneous ecological succession. For this purpose, an experimental test was carried out in two sites characterized by different post-mining conditions: 1) natural succession, 2) reclamation with planting trees. These sites are located in the post-mining area of Sokolov (Czech Republic). For the experimental test repacked soil cores were prepared in laboratory with sieved soil sampled from the two sites. The soil cores were prepared maintaining the sequence of soil horizons present in the field. These samples were inoculated separately with two genera of earthworms (Lumbricus and Aporrectodea) and two of centipedes (Julida and Polydesmus). In particular, based on their body size, were inoculated for each cylinder 2 individuals of millipedes, 1 individual of Lumbricus and 4 individuals of Aporrectodea. For each treatment and for control samples 5 replicates were prepared and all samples were incubated in field for 1 month in the two original sampling sites. After the incubation the samples were removed from the field and transported in laboratory in order to perform the analysis of microbial respiration, of PLFA (phospholipid-derived fatty acids) and ergosterol contents and finally for the characterization of soil structure. All replicates were subjected to soil respiration measurement by means of chemical titration method. Then some replicates were destructively analyzed for PLFA and ergosterol and others were used for the 3D soil image analysis of the soil pore system. The soil cores were imaged using X-ray microtomography and three-dimensional image processing was performed in order to obtain 3D reconstructions and preliminary analysis of the identified biopores. The experimental approach used in this multidisciplinary study showed a promising potential to provide new useful information about the widely differentiated contribution of many types of macrofauna to the formation of the soil pore system and to the development of the soil microbial functions in different types of environments.

Sample support and resistivity imaging interpretation

NASA Astrophysics Data System (ADS)

Bentley, L. R.; Gharibi, M.

2003-04-01

Three-D Electrical Resistivity Imaging (ERI) is a powerful technique that can be used to improve site characterization. In order to integrate ERI with other site characterization measurements such as soil and water chemistry, it is necessary to understand the sample support of various data. We have studied a decommissioned sour gas processing plant which has experienced releases of glycol and amine. Ammonium and acetic acid are degradation products that cause elevated electrical conductivity (EC) in groundwater and soils.The site is underlain by glacial till that is fractured and has thin sand lenses. 3-D ERI inversion results, direct push tool EC and core EC from the same location are well correlated. However, groundwater EC from piezometer installations are poorly correlated with ERI EC. We hypothesize that the ERI, direct push and core EC are mainly meausuring relatively immobile pore water EC in the fine grain matrix. Piezometer water is derived from mobile groundwater that travels in preferred flow paths such as fractures and higher permeability sand lenses. Due to dewatering and other remediation efforts, the mobile groundwater can have a different chemistry, concentration and EC than the immobile pore water. Consequently, the sample support is different for the groundwater samples and the difference explains the poor correlation between ERI EC and groundwater sample EC. In this particular case, we have the potential to monitor the chemical evolution of the source areas, but cannot use ERI to monitor the chemical evolution of mobile groundwater.

Hydrogeologic applications for historical records and images from rock samples collected at the Nevada National Security Site and vicinity, Nye County, Nevada - A supplement to Data Series 297

USGS Publications Warehouse

Wood, David B.

2018-03-14

Rock samples have been collected, analyzed, and interpreted from drilling and mining operations at the Nevada National Security Site for over one-half of a century. Records containing geologic and hydrologic analyses and interpretations have been compiled into a series of databases. Rock samples have been photographed and thin sections scanned. Records and images are preserved and available for public viewing and downloading at the U.S. Geological Survey ScienceBase, Mercury Core Library and Data Center Web site at https://www.sciencebase.gov/mercury/ and documented in U.S. Geological Survey Data Series 297. Example applications of these data and images are provided in this report.

Sedimentological, mineralogical, and geochemical results from surface sediments and the sediment record from Site 2 of the ICDP drilling project at Lake Towuti, Indonesia

NASA Astrophysics Data System (ADS)

Hasberg, A. K.; Melles, M.; Wennrich, V.; Vogel, H.; Just, J.; Russell, J. M.; Bijaksana, S.; Morlock, M.; Opitz, S.

2017-12-01

More than 1000 m of sediment core were recovered in spring 2015 from three different drill sites in tropical Lake Towuti (2.5°S, 121°E), Indonesia, during the Towuti Drilling Project (TDP) of the International Continental Scientific Drilling Program (ICDP). Furthermore, a set of 84 lake surface sediment samples, distributed over the entire lake, was collected in order to better understand modern sedimentary processes. The surface samples were investigated for physical, chemical, mineralogical, and biological properties at the University of Cologne (UoC), Germany. On the sediment cores macro- and microscopical lithological descriptions, line-scan imaging, logging of physical properties (MSCL), and subsampling was conducted at the National Lacustrine Core Facility of the University of Minnesota, USA, in November 2015 and January 2016. Afterwards, the archive core halves and 672 subsamples of TDP Site 2 were shipped to the UoC for X-Ray Fluorescence (XRF) scanning and sedimentological, geochemical, and mineralogical analyses, respectively, supplemented by visible to near-infrared spectroscopy (VNIR) at Brown University, USA. The data from the surface samples evidence that allochthonous sedimentation in Lake Towuti today is dominated by fluvial supply from five distinguishable source areas: (i) the Mahalona River to the north, which drains lakes Mahalona and Matano, (ii) inlets around the village of Timampu to the northwest, (iii) the Loeha River to the east, (iv) the Lengke River to the south, and (v) the Lemo-Lemo River to the northeast of Lake Towuti. Of these, source areas (ii) and (iii) as well as (iv) and (v) have similar geochemical compositions, respectively. In addition, the lake sedimentation is significantly influenced by gravitational sediment supply from steep slopes as well as lake-internal gravitational and density-driven processes. The uppermost 41 m of sediment core 2A consist of pelagic sediments (totaling 11 m) and event layers from mass movement ( 30 m) that were formed during the past 50 cal kyr. In this period, the data reflect significant climatic and environmental changes, in particular in precipitation and lake level. These changes seem to be coupled to prominent paleoclimatic events.

Biogeochemical and Microbial Survey of Gravity Cores from the Guaymas Basin and Sonora Margin

NASA Astrophysics Data System (ADS)

Buckley, A.; Mckay, L. J.; Chanton, J.; Hensen, C.; Turner, T.; Aiello, I. W.; Ravelo, A. C.; Mortera, C.; Teske, A.

2015-12-01

During the cruise "Guaymas14" with RV El Puma (Oct. 14-25, 2014), 15 sediment cores were obtained from the Guaymas Basin Ridge flanks and the Sonora Margin, to contrast the shallow subsurface sediments of the seafloor set at this spreading center and its adjacent continental margin. Here we present biogeochemical profiles of porewater dissolved gases and stable ions, along with high-throughout 16S rRNA gene sequencing of selected samples. Cores from the NW and SE ends of the Guaymas Basin ridge flanks were not sulfidic, and showed neither sulfate depletion nor methane accumulation. In contrast, samples of compression-impacted Sonora Margin on the NE edge of Guaymas Basin and from the upper Sonora Margin beneath the oxygen minimum zone showed an abundance of sulfide, DIC with sulfate depletion, and accumulation of biogenic methane (δ13C-CH4 ca. -85 to -88 ‰) at supersaturated concentrations below sulfate-replete sediment. Samples from an attenuated off-axis seep site on the NW flank of Guaymas Basin differed from both Sonora Margin and Guaymas Basin. The off-axis seep sediments contained 1 to 1.5 mM methane, with distinct δ13C -isotopic content (δ13C-CH4 near -60 ‰); intermediate to the biogenic methane of the Sonora Margin and the hydrothermally produced methane at Guaymas Basin. Unaltered sulfate and low sulfide concentrations indicate insufficiently reduced conditions, suggesting the methane was not produced in situ. Porewater DIC concentrations in the old seep site and the control site were similar to each other (3-5 mM), and lower than in the Sonora Margin sites (ca. 20-40 mM), indicating low bioremineralization in the old seep site and control sediments. Diverse seafloor habitats are expected to result in distinct microbiota that range from strictly anaerobic seep specialists and methane-cycling archaea in the Sonora Margin to diversified heterotrophic communities in the off-axis ridge flank sediments of Guaymas Basin; high-throughput sequencing should also address potential hydrothermal microbial signature in the attenuated off-axis seep site.

High diversity of tropical peatland ecosystem types in the Pastaza-Marañón basin, Peruvian Amazonia

NASA Astrophysics Data System (ADS)

LäHteenoja, Outi; Page, Susan

2011-06-01

Very little information exists on Amazonian peatlands with most studies on tropical peatlands concentrating on Southeast Asia. Here we describe diversity of Amazonian peatland ecosystems and consider its implications for the global diversity of tropical peatland ecosystems. Nine study sites were selected from within the most extensive wetland area of Peruvian Amazonia: the 120,000 km2 Pastaza-Marañón basin. Peat thickness was determined every 500 m from the edge toward the center of each site, and peat samples were collected from two cores per site. Samples from the entire central core and surface samples from the other core were analyzed for nutrient content. Topography of four peat deposits was measured. In order to study differences in vegetation, pixel values were extracted from a satellite image. The surface peat nutrient content of the peatlands varied from very nutrient-rich to nutrient-poor. Two of the peatlands measured for their topography were domed (5.4 and 5.8 m above the stream), one was gently sloping (1.4 m above the stream), and one was flat and occurred behind a 7 m high levee. Five different peatland vegetation types were detected on the basis of pixel values derived from the satellite image. The peat cores had considerable variation in nutrient content and showed different developmental pathways. In summary, the Pastaza-Marañón basin harbors a considerable diversity of previously undescribed peatland ecosystems, representing a gradient from atmosphere-influenced, nutrient-poor ombrotrophic bogs through to river-influenced, nutrient-rich swamps. Their existence affects the habitat diversity, carbon dynamics, and hydrology of the Amazonian lowlands, and they also provide an undisturbed analog for the heavily disturbed peatlands of Southeast Asia. Considering the factors threatening the Amazonian lowlands, there is an urgent need to investigate and conserve these peatland ecosystems, which may in the near future be among the very few undisturbed tropical ombrotrophic bogs remaining in the world.

Sedimentology of cores recovered from the Canada Basin of the Arctic Ocean

NASA Astrophysics Data System (ADS)

Edwards, B. D.; Saint-Ange, F.; Pohlman, J.; Higgins, J.; Mosher, D. C.; Lorenson, T. D.; Hart, P.

2011-12-01

Researchers from the United States and Canada are collaborating to understand the tectonic and sedimentary history of the Arctic Ocean between Canada and Alaska. As part of this on-going study, a joint US-Canadian ice breaker expedition operated in parts of the Canada Basin during August 2010. Occasional interruptions of the seismic data acquisition provided the ship time to collect gravity and piston cores at five sites-of-opportunity throughout the basin. High-resolution multibeam bathymetry and chirp sub-bottom profiler data collected immediately prior to coring reveal the fine-scale morphology of each site. Core photographs, X-ray radiographs, and physical property data support the following descriptions. Two piston cores were collected from the Beaufort Sea continental margin in a region of known bottom simulating reflectors (BSRs). Site 1 (2538 m water depth): This core recovered 5.72 m of gas-charged, gray sticky clay and silty-clay from an approximately 1100 m diameter, 130 m high conical mound overlying the crest of a buried anticline. Gas hydrate recovered in the core catcher combined with cracks and voids, methane and other hydrocarbon gasses, pyrite concretions, chemosynthetic clams, carbonate nodules, and soft carbonate masses indicate the likely upward migration of deep-seated fluids. Site 2 (1157 m water depth): This core, positioned 40 km upslope from the gas hydrate core, recovered 3 m of gray sticky silty clay and clayey silt near the base of an erosional scarp. Some voids and fracturing are apparent but carbonate masses and pyrite concretions are absent. Site 3 (3070 m water depth): This core from the top of a seamount discovered in 2009 in the north-central part of the Canada Basin recovered 4.94 m of sediment. More than 3 m of dark brown to yellowish brown, massive interbedded silty clays with sands and matrix-supported gravels (ice rafted debris [IRD]) occur in abrupt contact with underlying reddish yellow to brownish yellow silty clay and gravelly sandy clay interpreted to be altered hydrothermally. Successions of IRD layers create a thinly- to medium-bedded sequence throughout the lower section. Site 4 (3700 m water depth; central Canada Basin): This core recovered 3.4 m of sediment typified by decimeter-thick sequences of stacked graded beds with erosional basal contacts (Bouma sequences) characteristic of turbidite deposition. Site 5 (2081 m water depth; continental slope west of the Canadian archipelago): This core recovered 4.96 m of sediment of which the upper 2 m is silty clay to clayey silt with dispersed sand and granules. This upper section has an irregular, sharp basal contact with an underlying 16-cm-thick clast-supported massive gravel. The gravel has a scoured basal contact and overlies a monotonous gray clayey silt containing dispersed granules of IRD. Sparse and poorly preserved fauna throughout all the cores make age determination difficult; however, given the paucity of sediment cores in the Arctic Ocean, these samples provide vital geophysical groundtruth and sedimentological information about the basin.

Lunar map showing traverse plans for Apollo 14 lunar landing mission

NASA Image and Video Library

1970-09-01

This lunar map shows the traverse plans for the Apollo 14 lunar landing mission. Areas marked include Lunar module landing site, areas for the Apollo Lunar Surface Experiment Package (ALSEP) and areas for gathering of core samples.

Shallow Carbon Sequestration Demonstration Project

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pendergrass, Gary; Fraley, David; Alter, William

The potential for carbon sequestration at relatively shallow depths was investigated at four power plant sites in Missouri. Exploratory boreholes were cored through the Davis Shale confining layer into the St. Francois aquifer (Lamotte Sandstone and Bonneterre Formation). Precambrian basement contact ranged from 654.4 meters at the John Twitty Energy Center in Southwest Missouri to over 1100 meters near the Sioux Power Plant in St. Charles County. Investigations at the John Twitty Energy Center included 3D seismic reflection surveys, downhole geophysical logging and pressure testing, and laboratory analysis of rock core and water samples. Plans to perform injectivity tests atmore » the John Twitty Energy Center, using food grade CO{sub 2}, had to be abandoned when the isolated aquifer was found to have very low dissolved solids content. Investigations at the Sioux Plant and Thomas Hill Energy Center in Randolph County found suitably saline conditions in the St. Francois. A fourth borehole in Platte County was discontinued before reaching the aquifer. Laboratory analyses of rock core and water samples indicate that the St. Charles and Randolph County sites could have storage potentials worthy of further study. The report suggests additional Missouri areas for further investigation as well.« less

Analytical Results for 35 Mine-Waste Tailings Cores and Six Bed-Sediment Samples, and An Estimate of the Volume of Contaminated Material at Buckeye Meadow on Upper Basin Creek, Northern Jefferson County, Montana

USGS Publications Warehouse

Fey, David L.; Church, Stan E.; Finney, Christopher J.

1999-01-01

Metal-mining related wastes in the Boulder River basin study area in northern Jefferson County, Montana have been implicated in their detrimental effects on water quality with regard to acid-generation and toxic-metal solubilization. Flotation-mill tailings in the meadow below the Buckeye mine, hereafter referred to as the Buckeye mill-tailings site, have been identified as significant contributors to water quality degradation of Basin Creek, Montana. Basin Creek is one of three tributaries to the Boulder River in the study area; bed sediments and waters draining from the Buckeye mine have also been implicated. Geochemical analysis of 35 tailings cores and six bed-sediment samples was undertaken to determine the concentrations of Ag, As, Cd, Cu, Pb,and Zn present in these materials. These elements are environmentally significant, in that they can be toxic to fish and/or the invertebrate organisms that constitute their food. A suite of one-inch cores of dispersed flotation-mill tailings and underlying premining material was taken from a large, flat area north of Basin Creek near the site of the Buckeye mine. Thirty-five core samples were taken and divided into 204 subsamples. The samples were analyzed by ICP-AES (inductively coupled plasma-atomic emission spectroscopy) using a mixed-acid digestion. Results of the core analyses show that the elements listed above are present at moderate to very high concentrations (arsenic to 63,000 ppm, silver to 290 ppm, cadmium to 370 ppm, copper to 4,800 ppm, lead to 93,000 ppm, and zinc to 23,000 ppm). Volume calculations indicate that an estimated 8,400 metric tons of contaminated material are present at the site. Six bed-sediment samples were also subjected to the mixed-acid total digestion, and a warm (50°C) 2M HCl-1% H2O2 leach and analyzed by ICP-AES. Results indicate that bed sediments of Basin Creek are only slightly impacted by past mining above the Buckeye-Enterprise complex, moderately impacted at the upper (eastern) end of the tailings area, and heavily impacted at the lower (western) end of the area and downstream. The metals are mostly contained in the 2M HCl-1% H2O2 leachable phase, which are the hydrous amorphous iron- and manganese-hydroxide coatings on detrital sediment particles.

Strontium Isotopic Composition of Paleozoic Carbonate Rocks in the Nevada Test Site Vicinity, Clark, Lincoln, and Nye Counties, Nevada and Inyo County, California.

DOE Office of Scientific and Technical Information (OSTI.GOV)

James B. Paces; Zell E. Peterman; Kiyoto Futa

2007-08-07

Ground water moving through permeable Paleozoic carbonate rocks represents the most likely pathway for migration of radioactive contaminants from nuclear weapons testing at the Nevada Test Site, Nye County, Nevada. The strontium isotopic composition (87Sr/86Sr) of ground water offers a useful means of testing hydrochemical models of regional flow involving advection and reaction. However, reaction models require knowledge of 87Sr/86Sr data for carbonate rock in the Nevada Test Site vicinity, which is scarce. To fill this data gap, samples of core or cuttings were selected from 22 boreholes at depth intervals from which water samples had been obtained previously aroundmore » the Nevada Test Site at Yucca Flat, Frenchman Flat, Rainier Mesa, and Mercury Valley. Dilute acid leachates of these samples were analyzed for a suite of major- and trace-element concentrations (MgO, CaO, SiO2, Al2O3, MnO, Rb, Sr, Th, and U) as well as for 87Sr/86Sr. Also presented are unpublished analyses of 114 Paleozoic carbonate samples from outcrops, road cuts, or underground sites in the Funeral Mountains, Bare Mountain, Striped Hills, Specter Range, Spring Mountains, and ranges east of the Nevada Test Site measured in the early 1990's. These data originally were collected to evaluate the potential for economic mineral deposition at the potential high-level radioactive waste repository site at Yucca Mountain and adjacent areas (Peterman and others, 1994). Samples were analyzed for a suite of trace elements (Rb, Sr, Zr, Ba, La, and Ce) in bulk-rock powders, and 87Sr/86Sr in partial digestions of carbonate rock using dilute acid or total digestions of silicate-rich rocks. Pre-Tertiary core samples from two boreholes in the central or western part of the Nevada Test Site also were analyzed. Data are presented in tables and summarized in graphs; however, no attempt is made to interpret results with respect to ground-water flow paths in this report. Present-day 87Sr/86Sr values are compared to values for Paleozoic seawater present at the time of deposition. Many of the samples have 87Sr/86Sr compositions that remain relatively unmodified from expected seawater values. However, rocks underlying the northern Nevada Test Site as well as rocks exposed at Bare Mountain commonly have elevated 87Sr/86Sr values derived from post-depositional addition of radiogenic Sr most likely from fluids circulating through rubidium-rich Paleozoic strata or Precambrian basement rocks.« less

Strontium Isotopic Composition of Paleozoic Carbonate Rocks in the Nevada Test Site Vicinity, Clark, Lincoln, and Nye Counties, Nevada, and Inyo County, California

USGS Publications Warehouse

Paces, James B.; Peterman, Zell E.; Futo, Kiyoto; Oliver, Thomas A.; Marshall, Brian D.

2007-01-01

Ground water moving through permeable Paleozoic carbonate rocks represents the most likely pathway for migration of radioactive contaminants from nuclear weapons testing at the Nevada Test Site, Nye County, Nevada. The strontium isotopic composition (87Sr/86Sr) of ground water offers a useful means of testing hydrochemical models of regional flow involving advection and reaction. However, reaction models require knowledge of 87Sr/86Sr data for carbonate rock in the Nevada Test Site vicinity, which is scarce. To fill this data gap, samples of core or cuttings were selected from 22 boreholes at depth intervals from which water samples had been obtained previously around the Nevada Test Site at Yucca Flat, Frenchman Flat, Rainier Mesa, and Mercury Valley. Dilute acid leachates of these samples were analyzed for a suite of major- and trace-element concentrations (MgO, CaO, SiO2, Al2O3, MnO, Rb, Sr, Th, and U) as well as for 87Sr/86Sr. Also presented are unpublished analyses of 114 Paleozoic carbonate samples from outcrops, road cuts, or underground sites in the Funeral Mountains, Bare Mountain, Striped Hills, Specter Range, Spring Mountains, and ranges east of the Nevada Test Site measured in the early 1990's. These data originally were collected to evaluate the potential for economic mineral deposition at the potential high-level radioactive waste repository site at Yucca Mountain and adjacent areas (Peterman and others, 1994). Samples were analyzed for a suite of trace elements (Rb, Sr, Zr, Ba, La, and Ce) in bulk-rock powders, and 87Sr/86Sr in partial digestions of carbonate rock using dilute acid or total digestions of silicate-rich rocks. Pre-Tertiary core samples from two boreholes in the central or western part of the Nevada Test Site also were analyzed. Data are presented in tables and summarized in graphs; however, no attempt is made to interpret results with respect to ground-water flow paths in this report. Present-day 87Sr/86Sr values are compared to values for Paleozoic seawater present at the time of deposition. Many of the samples have 87Sr/86Sr compositions that remain relatively unmodified from expected seawater values. However, rocks underlying the northern Nevada Test Site as well as rocks exposed at Bare Mountain commonly have elevated 87Sr/86Sr values derived from post-depositional addition of radiogenic Sr most likely from fluids circulating through rubidium-rich Paleozoic strata or Precambrian basement rocks.

Chew Bahir: A Key Site within the Hominin Sites and Paleolakes Drilling Project, towards a Half Million-Year Climate Record from Southern Ethiopia

NASA Astrophysics Data System (ADS)

Schaebitz, F.; Asrat, A.; Lamb, H. F.; Trauth, M. H.; Foerster, V. E.; Junginger, A.; Raub, T. D.; Gromig, R.; Viehberg, F. A.; Roberts, H. M.; Cohen, A.

2015-12-01

Chew Bahir, a saline mudflat today, is one of the five sites in East Africa, drilled within the framework of HSPDP (Hominin Site and Paleolakes Drilling Project). It is also one of the key sites of the Collaborative Research Centre (CRC-806) "Our way to Europe" aiming at the reconstruction of environmental conditions in the source region of modern man (H. sapiens). It is suggested that a changing environment could have triggered the mobility and dispersal of modern man. The oldest known fossils of anatomical modern humans (~195 ka BP) were found in the Omo basin, not more than 90km westwards of our drill site. The deposits in the tectonic basin of Chew Bahir in southern Ethiopia were cored in Nov. 2014 in two boreholes down to 280 m and 260 m below surface respectively. The overlapping long cores (drilled ~20 m apart from each other), were opened, scanned, described and sampled in low resolution in April 2015. The recovered sediments mostly contain green-greyish to light coloured and brown to reddish clays and silty clays, interbedded with some laminated mica-rich sand layers and occurrences of carbonate concretions and nodules, which decrease upcore. Here we will present a first set of results on the composite core, comprising mainly lithology and magnetic susceptibility (MS). Based on known sedimentation rates from pre-studies performed on short cores across the basin, we anticipate the deep drilled cores to cover at least 500 ka BP. Moreover, new insights into the role of post-depositional alteration, especially of clay minerals and zeolites, will be presented as a contribution to an improved understanding of formation processes. The results support the identification of wet and dry climate periods in the past. Those pronounced variations of moisture availability, are thought to have influenced the evolution and mobility of Homo sapiens sapiens.

Carbon and nitrogen isotope composition of core catcher samples from the ICDP deep drilling at Laguna Potrok Aike (Patagonia, Argentina)

NASA Astrophysics Data System (ADS)

Luecke, Andreas; Wissel, Holger; Mayr*, Christoph; Oehlerich, Markus; Ohlendorf, Christian; Zolitschka, Bernd; Pasado Science Team

2010-05-01

The ICDP project PASADO aims to develop a detailed paleoclimatic record for the southern part of the South American continent from sediments of Laguna Potrok Aike (51°58'S, 70°23'W), situated in the Patagonian steppe east of the Andean cordillera and north of the Street of Magellan. The precursor project SALSA recovered the Holocene and Late Glacial sediment infill of Laguna Potrok Aike and developed the environmental history of the semi-arid Patagonian steppe by a consequent interdisciplinary multi-proxy approach (e.g. Haberzettl et al., 2007). From September to November 2008 the ICDP deep drilling took place and successfully recovered in total 510 m of sediments from two sites resulting in a composite depth of 106 m for the selected main study Site 2. A preliminary age model places the record within the last 50.000 years. During the drilling campaign, the core catcher content of each drilled core run (3 m) was taken as separate sample to be shared and distributed between involved laboratories long before the main sampling party. A total of 70 core catcher samples describe the sediments of Site 2 and will form the base for more detailed investigations on the palaeoclimatic history of Patagonia. We here report on the organic carbon and nitrogen isotope composition of bulk sediment and plant debris of the core catcher samples. Similar investigations were performed for Holocene and Late Glacial sediments of Laguna Potrok Aike revealing insights into the organic matter dynamics of the lake and its catchment as well as into climatically induced hydrological variations with related lake level fluctuations (Mayr et al., 2009). The carbon and nitrogen content of the core catcher fine sediment fraction (<200 µm) is low to very low (around 1 % and 0.1 %, respectively) and requires particular attention in isotope analysis. The carbon isotope composition shows comparably little variation around a value of -26.0 per mil. The positive values of the Holocene and the Late Glacial (up to 22.0 per mil) are only sporadically reached down core. Compared to this, separated moss debris is remarkably 13C depleted with a minimum at 31.5 per mil. The nitrogen isotope ratios of glacial Laguna Potrok Aike sediments are lower (2.5 per mil) than those of the younger part of the record. The core catcher samples indicate several oscillations between 0.5 and 3.5 per mil. Data suggest a correlation between nitrogen isotopes and C/N ratios, but no linear relation between carbon isotopes and carbon content and an only weak relationship between carbon and nitrogen isotopes. Increasing nitrogen isotope values from 8000 cm downwards could probably be related to changed environmental conditions of Marine Isotope Stage 3 (MIS 3) compared to Marine Isotope Stage 2 (MIS 2). This will be further evaluated with higher resolution from the composite profile including a detailed study of discrete plant debris layers. References Haberzettl, T. et al. (2007). Lateglacial and Holocene wet-dry cycles in southern Patagonia: chronology, sedimentology and geochemistry of a lacustrine record from Laguna Potrok Aike, Argentina. The Holocene, 17: 297-310. Mayr, C. et al. (2009). Isotopic and geochemical fingerprints of environmental changes during the last 16,000 years on lacustrine organic matter from Laguna Potrok Aike (southern Patagonia, Argentina). Journal of Paleolimnology, 42: 81-102.

Enantiomeric composition of chiral polychlorinated biphenyl atropisomers in aquatic bed sediment

USGS Publications Warehouse

Wong, C.S.; Garrison, A.W.; Foreman, W.T.

2001-01-01

Enantiomeric ratios (ERs) for eight polychlorinated biphenyl (PCB) atropisomers were measured in aquatic sediment from selected sites throughout the United States by using chiral gas chromatography/mass spectrometry. Nonracemic ERs for PCBs 91, 95, 132, 136, 149, 174, and 176 were found in sediment cores from Lake Hartwell, SC, which confirmed previous inconclusive reports of reductive dechlorination of PCBs at these sites on the basis of achiral measurements. Nonracemic ERs for many of the atropisomers were also found in bed-sediment samples from the Hudson and Housatonic Rivers, thus indicating that some of the PCB biotransformation processes identified at these sites are enantioselective. Patterns in ERs among congeners were consistent with known reductive dechlorination patterns at both river sediment basins. The enantioselectivity of PCB 91 is reversed between the Hudson and Housatonic River sites, which implies that the two sites have different PCB biotransformation processes with different enantiomer preferences.Enantiomeric ratios (ERs) for eight polychlorinated biphenyl (PCB) atropisomers were measured in aquatic sediment from selected sites throughout the United States by using chiral gas chromatography/mass spectrometry. Nonracemic ERs for PCBs 91, 95, 132, 136, 149, 174, and 176 were found in sediment cores from Lake Hartwell, SC, which confirmed previous inconclusive reports of reductive dechlorination of PCBs at these sites on the basis of achiral measurements. Nonracemic ERs for many of the atropisomers were also found in bed-sediment samples from the Hudson and Housatonic Rivers, thus indicating that some of the PCB biotransformation processes identified at these sites are enantioselective. Patterns in ERs among congeners were consistent with known reductive dechlorination patterns at both river sediment basins. The enantioselectivity of PCB 91 is reversed between the Hudson and Housatonic River sites, which implies that the two sites have different PCB biotransformation processes with different enantiomer preferences.

The Apollo 14 regolith - Chemistry of cores 14210/14211 and 14220 and soils 14141, 14148, and 14149

NASA Technical Reports Server (NTRS)

Laul, J. C.; Papike, J. J.; Simon, S. B.

1982-01-01

Neutron activation analysis was performed on bulk and size fractions from drive tube specimens from 39 cm and 16.5 cm depths, and soil samples taken at the Apollo 14 landing site. Chemical data were obtained for 31 major, minor, and trace elements in the KREEPy soils. The cores were homogeneous in chemical composition, containing 20% LKFM, 15% mare basalt, 6% ANT, and 59% high-K KREEP, according to the classifications of Laul and Papike (1980). The meteoritic fraction was 3-7% for both cores, while the chemical compositions of both cores and soils were similar. Differences were detected in the fractions finer than 10 microns, which were more feldspathic than the coarser samples. The similarities between the grains 1000-90 micron in diam and less than 10 micron in diam, in terms of chemical contents, indicates that the observed agglutinates were derived from fusion of the finest grained fraction. The dominant soil-forming processes were comminution and vertical mixing of the regolith.

Did the onset of high amplitude glacio-eustatic cycles trigger mass-transport processes on the Northwest Shelf of Australia? Insights from IODP expedition 356

NASA Astrophysics Data System (ADS)

Gallagher, S. J.; McCaffrey, J.; Wallace, M. W.; Keep, M.; Fulthorpe, C.; Bogus, K.; McHugh, C.

2017-12-01

Mass-transport processes on continental margins may have catastrophic consequences, causing tsunamis, major rock falls and avalanches and can destroy offshore hydrocarbon installations. Mass-transport deposits (MTD's) with volumes 17 to >162 km3 are common along the northwest margin of Australia. One of the largest is the Gorgon slide which is offshore from Barrow Island with a minimum volume of 250 km3. Age estimates for slides on the Northwest Shelf are variable and range from Miocene to Recent (Gorgon MTD), late Pliocene to Recent (Thebe/Bonaventure MTD's) and Pleistocene to Recent. This age uncertainty is related to a lack of cored sections through these slides and relies on pre-existing ages and correlations from poorly dated sections (usually industry well sections with minimal samples in the upper 500 m) distal from the MTD's. Therefore, the age, origin and history of these MTD's is not well known. A recent International Ocean Discovery Program Expedition (IODP Expedition 356) to the region obtained a series of continuous cores from the upper 600m to 1.1 km of the Northern Carnarvon and Roebuck Basins. Four sites were cored adjacent to hydrocarbon wells; West Tryal Rocks-2 (Site U1461), Fisher-1 (Site U1462), Picard-1 (Site U1463) and Minilya-1 (Site U1464). Site U1461 yielded 100% core recovery through the Gorgon Slide. Preliminary data from this section suggests that it is relatively young (<1 Ma) with ongoing activity from 0.5 Ma continuing to today. We suggest neotectonism combined with the onset of high amplitude glacio-eustatic cycles may have been triggering factors for this slide.

Three Types of Earth's Inner Core Boundary

NASA Astrophysics Data System (ADS)

Tian, D.; Wen, L.

2017-12-01

The Earth's inner core boundary (ICB) is the site where the liquid outer core solidifies and the solid inner core grows. Thus, the fine-scale structure of the ICB is important for our understanding of the thermo-compositional state of the Earth's core. In this study, we collect a large set of seismic records with high-quality pre-critical PKiKP and PcP phase pairs, recorded by two dense seismic arrays, Hi-net in Japan and USArray in US. This dataset samples the ICB regions beneath East Asia, Mexico and the Bering Sea. We use differential travel times, amplitude ratios and waveform differences between PKiKP and PcP phases to constrain fine-scale structure of the ICB. The sampled ICB can be grouped into three types based on their seismic characteristics: (1) a simple ICB with a flat and sharp boundary, (2) a bumpy ICB with topographic height changes of 10 km, and (3) a localized mushy ICB with laterally varying thicknesses of 4-8 km. The laterally varying fine-scale structure of the ICB indicates existence of complex small-scale forces at the surface and a laterally varying solidification process of the inner core due to lateral variation of thermo-compositional condition near the ICB.

Comparing the Direct Costs and Infrastructure Implications of Anti-Icing Strategies

DOT National Transportation Integrated Search

2015-12-01

FField and laboratory investigations were conducted to examine the effects of various deicers along with freeze/thaw cycles on concrete materials. Samples cored from three sites in Nevada were used to evaluate the impact of deicers on the concrete in...

Effects of Explosions in Underground Magazines

DTIC Science & Technology

1989-10-01

Kayenta sandstone near Grand Junction, CO. Core samples indicated a relatively uniform rock with thin, horizontal, irregularly spaced, clay seams (Swift...Mechanical Properties of a Kayenta Sandstone from the Mixed Company Site," DNA 3683F, July 1975, Physics International Company, San Leandro, CA. 33

Using pre-screening methods for an effective and reliable site characterization at megasites.

PubMed

Algreen, Mette; Kalisz, Mariusz; Stalder, Marcel; Martac, Eugeniu; Krupanek, Janusz; Trapp, Stefan; Bartke, Stephan

2015-10-01

This paper illustrates the usefulness of pre-screening methods for an effective characterization of polluted sites. We applied a sequence of site characterization methods to a former Soviet military airbase with likely fuel and benzene, toluene, ethylbenzene, and xylene (BTEX) contamination in shallow groundwater and subsoil. The methods were (i) phytoscreening with tree cores; (ii) soil gas measurements for CH4, O2, and photoionization detector (PID); (iii) direct-push with membrane interface probe (MIP) and laser-induced fluorescence (LIF) sensors; (iv) direct-push sampling; and (v) sampling from soil and from groundwater monitoring wells. Phytoscreening and soil gas measurements are rapid and inexpensive pre-screening methods. Both indicated subsurface pollution and hot spots successfully. The direct-push sensors yielded 3D information about the extension and the volume of the subsurface plume. This study also expanded the applicability of tree coring to BTEX compounds and tested the use of high-resolution direct-push sensors for light hydrocarbons. Comparison of screening results to results from conventional soil and groundwater sampling yielded in most cases high rank correlation and confirmed the findings. The large-scale application of non- or low-invasive pre-screening can be of help in directing and focusing the subsequent, more expensive investigation methods. The rapid pre-screening methods also yielded useful information about potential remediation methods. Overall, we see several benefits of a stepwise screening and site characterization scheme, which we propose in conclusion.

Fast elemental screening of soil and sediment profiles using small-spot energy-dispersive X-ray fluorescence: application to mining sediments geochemistry.

PubMed

Gonzalez-Fernandez, Oscar; Queralt, Ignacio

2010-09-01

Elemental analysis of different sediment cores originating from the Cartagena-La Union mining district in Spain was carried out by means of a programmable small-spot energy-dispersive X-ray fluorescence (EDXRF) spectrometer to study the distribution of heavy metals along soil profiles. Cores were obtained from upstream sediments of a mining creek, from the lowland sedimentation plain, and from a mining landfill dump (tailings pile). A programmable two-dimensional (2D) stage and a focal spot resolution of 600 μm allow us to obtain complete core mapping. Geochemical results were verified using a more powerful wavelength-dispersion X-ray fluorescence (WDXRF) technique. The data obtained was processed in order to study the statistical correlations within the elemental compositions. The results obtained allow us to observe the differential in-depth distribution of heavy metals among the sampled zones. Dump site cores exhibit a homogeneous distribution of heavy metals, whereas the alluvial plain core shows accumulation of heavy metals in the upper part. This approach can be useful for the fast screening of heavy metals in depositional environments around mining sites.

Lithostratigraphic and Hydrogeologic Characteristics of the Ordovician Sinnipee Group in the Vicinity of Waupun, Fond du Lac County, Wisconsin, 1995-96

USGS Publications Warehouse

Dunning, Charles P.; Yeskis, Douglas J.

2007-01-01

Three boreholes were drilled at a farm site near Waupun, Wis., to improve the understanding of regional hydrogeology of the Ordovician Sinnipee Group. At the site the Sinnipee Group is the uppermost bedrock unit and is found to be about 183 ft thick. On the basis of core descriptions by the Illinois State Geological Survey, the Sinnipee Group at the site comprises (stratigraphically lowest to highest) the Platteville Formation (about 51 ft thick), the Decorah Formation (about 14 ft thick), and the Galena Dolomite (about 119 ft thick). The Illinois State Geological Survey noted that hardgrounds were common in the rock core, some having stratigraphic significance. Four very well developed hardgrounds were identified, three of which were used as formation or member contacts. The hardground at about 797 ft NGVD 29 represents the top of the Platteville Formation, the hardground at about 754 ft represents the top of the Pecatonica Member of the Platteville Formation, and the hardground at about 746 ft represents the top of the Glenwood Formation. On the basis of samples collected from one borehole, the ground water at the site is of the calcium-magnesium bicarbonate type. Trichloroethene was detected in one sample at a concentration of 1 ?g/L, and the concentration of antimony in one sample exceeded the U.S. Environmental Protection Agency (USEPA) Primary Drinking Water Standard. Other water samples contained aluminum and sodium in concentrations that exceeded the USEPA Secondary Drinking Water Standard and the USEPA Drinking Water Equivalent Level, respectively. Samples from various depths contained concentrations of iron, manganese, or dissolved manganese that were near or exceeded the USEPA Secondary Drinking Water Standard. The cross-borehole radar tomography data show differences in velocity and attenuation among the three major units in the Sinnipee Group. Matrix porosity measured in rock-core samples correlates well with these velocity and attenuation tomograms. The Galena Dolomite has the lowest mean porosity at 2.4 percent (7 samples) and is represented in the tomograms as generally having the lowest attenuation and greatest velocity. Below the Galena Dolomite is a transition to a zone with the greatest attenuation and lowest velocity on the tomograms. The rock core shows this interval to be the shaley dolomite of the Decorah Formation which has a mean porosity of 8.3 percent (2 samples). Below the Decorah Formation, the Platteville Formation has a mean porosity of 3.6 percent (6 samples) and is represented in the tomograms as having velocity and attenuation generally intermediate between the Galena Dolomite and the Decorah Formation. The evaluation of the single-hole directional ground-penetrating radar reflection survey in FL-800 identified 15 reflectors (secondary permeability features). Some of the reflectors do correlate with fractures and partings noted on geophysical logs and rock core; however, many additional fractures and partings identified by the televiewer log and/or core description were not measured by the borehole radar survey. Horizontal or sub-horizontal reflectors (bedding-plane partings) which do correlate with indications of bedding-plane partings on the acoustic televiewer intersect the borehole at about 917 ft, 907 ft, 870 ft, 805 ft, and 797 ft. The flowmeter profiles indicate that water entering and exiting the boreholes at seven bedding-plane partings accounts for most of the total borehole transmissivity. The flowmeter profiles in all three boreholes show that more than 90 percent of the total borehole transmissivity is provided by bedding-plane partings found at 870 ft and higher stratigraphically within the Galena Dolomite. Static water levels were measured in selected intervals of the three boreholes, and vertical hydraulic gradients were estimated by comparing levels in adjacent intervals. Gradients were found to be almost uniformly downward, ranging from -0.040 to -1.251 ft/ft. On th

Measuring Concentrations of Dissolved Methane and Ethane and the 13 C of Methane in Shale and Till.

PubMed

Hendry, M Jim; Barbour, S Lee; Schmeling, Erin E; Mundle, Scott O C

2017-01-01

Baseline characterization of concentrations and isotopic values of dissolved natural gases is needed to identify contamination caused by the leakage of fugitive gases from oil and gas activities. Methods to collect and analyze baseline concentration-depth profiles of dissolved CH 4 and C 2 H 6 and δ 13 C-CH 4 in shales and Quaternary clayey tills were assessed at two sites in the Williston Basin, Canada. Core and cuttings samples were stored in Isojars ® in a low O 2 headspace prior to analysis. Measurements and multiphase diffusion modeling show that the gas concentrations in core samples yield well-defined and reproducible depth profiles after 31-d equilibration. No measurable oxidative loss or production during core sample storage was observed. Concentrations from cuttings and mud gas logging (including IsoTubes ® ) were much lower than from cores, but correlated well. Simulations suggest the lower concentrations from cuttings can be attributed to drilling time, and therefore their use to define gas concentration profiles may have inherent limitations. Calculations based on mud gas logging show the method can provide estimates of core concentrations if operational parameters for the mud gas capture cylinder are quantified. The δ 13 C-CH 4 measured from mud gas, IsoTubes ® , cuttings, and core samples are consistent, exhibiting slight variations that should not alter the implications of the results in identifying the sources of the gases. This study shows core and mud gas techniques and, to a lesser extent, cuttings, can generate high-resolution depth profiles of dissolved hydrocarbon gas concentrations and their isotopes. © 2016, National Ground Water Association.

Petrology and geochemistry of lithic fragments separated from the Apollo 15 deep-drill core

NASA Technical Reports Server (NTRS)

Lindstrom, M. M.; Nielsen, R. L.; Drake, M. J.

1977-01-01

Petrological and geochemical analysis of lithic fragments separated from the Apollo 15 deep-drill core showed these fragments to fall into the essentially the same range of rock types as observed in surface soil samples and large rock samples. Three particles are singled out as being of special interest. One sample is a mare basalt containing extremely evolved phases. The particle may represent small-scale imperfect crystal/liquid separation in a lava flow. A green glass particle is not the ultramafic emerald green glass described from the Apollo 15 site, but rather an ANT-like light green color, and has a quite different chemical composition from the ultramafic variety. One mare basalt displays a positive Eu anomaly and is enriched in plagioclase relative to olivine plus pyroxene.

Soil Biogeochemical and Biophysical Footprint of Forest to Pasture Conversion in the Western Pyrenees Mountains, France

NASA Astrophysics Data System (ADS)

Leigh, D.; Gragson, T. L.

2017-12-01

Summits of the humid-temperate western Pyrenees were converted from mixed forests to managed grasslands thousands of years ago, including use of fire. We hypothesize differences in soil chemical and physical traits evolved because of this transformation. Paired forest versus grassland soils were sampled at four separate hillslope sites having a clear boundary between the two vegetation types. Factors of climate, topography, parent material, and time of soil formation were essentially identical in the forests and pastures of each site, but the time of soil under grassland vegetation may have varied. Each paired hillslope site included five core samples from the upper 7.6 cm of the mineral soil within each vegetation type and the A horizon thickness was recorded at each core hole. In addition, one complete soil profile was sampled in each vegetation type at each site, making a total of 20 core samples and 4 complete profiles from each respective vegetation type. Analyses included bulk density, pH, plant-available nutrients, organic matter, fulvic versus humic acids, total carbon and nitrogen, amorphous silica, and charcoal content. Results indicate pastured A horizons are about three times as thick as forested soils, contain more organic matter, and have lower bulk densities. These traits favor much greater infiltration and water holding capacities of the pastured soils, which we validated with saturated hydraulic conductivity tests. Melanization has been more pronounced in the managed pastures, which contain significantly more humic acids than forests. Significantly more charcoal (black carbon) is present in the pastured soils from long-term use of fire, and having implications for sequestration of carbon. Pastures register significantly higher soil magnetic susceptibility than forests, also related to past use of fire as a management tool. Pastures contain greater contents of amorphous silica due to more rapid phytolith production from grasses as opposed to trees. Anthropic manipulation of the biotic factor of pedogenesis has created new soil materials, processes, and functions. Our results indicate better soil quality in pastured soils, counter to stereotypical concepts of soil degradation due to grazing, and having important implications for soil sustainability

Comparison of Three Biomass Sampling Techniques on Submersed Aquatic Plants in a Northern Tier Lake

DTIC Science & Technology

2010-07-01

distribution in 3 out of 14 species when comparing the box-core sampler and the rake method. These included forked duckweed (Lemna trisulca L, p...each site did not exhibit differences. These included coontail (p=0.2949), muskgrass (p=0.2746), American elodea (p=0.7622), forked duckweed (p...collected by the PVC-core sampler. These included coontail (p=0.000), chara (p=0.0219), American elodea (p=0.0061), forked duckweed (p=0.0000), najas (p

Geological Data Preservation Program Receives Bipartisan Support

NASA Astrophysics Data System (ADS)

Showstack, Randy

2014-09-01

More than 22 million vertical feet of geologic cores and cuttings fill the Kentucky Geological Survey's Well Sample and Core Library in Lexington. The materials are from at least 22,000 sites within Kentucky—including collections from oil and gas exploration operations, coal and other mining companies, highway construction projects, environmental studies, and federal facilities such as Fort Knox—and they are straining the 15-year-old facility to the point where there is no room to keep everything, according to geologist Patrick Gooding, the library manager.

Ice Core Reconnaissance in Siberian Altai for Mid-Latitudes Paleo-Climatic and Environmental Reconstruction

NASA Astrophysics Data System (ADS)

Aizen, V.; Aizen, E.; Kreutz, K.; Nikitin, S.; Fujita, K.; Cecil, D.

2001-12-01

Investigations in Siberian Altai permits to expand our scope from Tibet, Himalayas, Tien Shan and Pamir to the area located at the northeastern edge of the Central Asia Mountain System. Altai forms a natural barrier to the northern and western air masses and therefore affords an opportunity to develop modern paleo-climate records relating to the westerly jet stream, the Siberian High and Pacific monsoon. Moreover, Altai alpine snowice accumulation areas are appropriative for studying air pollution dynamics at the center of Eurasia, eastward from the major Former USSR air pollutants in Kazakhstan, South Siberia and Ural Mountains. During the last century Altai Mountains became extremely contaminated region by heavy metal mining, metallurgy, nuclear test in Semipalatinsk polygon and Baikonur rocket site. Our first field reconnaissance on the West Belukha snow/firn plateau at the Central Altai was carried out in July 2001. Dispute of the large Alatai Mountains glaciation, the West Belukha Plateau (49o48' N, 86o32'E, 4000-4100 m a.s.l.) is only one suitable snow accumulation site in Altai to recover ice-core paleo-climatic and environmental records that is not affected by meltwater percolation. The objective of our first reconnaissance was to find an appropriate deep drilling site by radio-echo sounding survey, to recover shallow ice-core, to identify the annual snow accumulation rate, major ions, heavy metals, radio nuclides and oxygen isotopes level distribution. During 6 days of work on the Plateau, a 22 m shallow firn/ice core has been recovered by PICO hand auger at elevation 4050 m where the results of radio-echo sounding suggests about 150 m ice thickness. In addition to the firn/ice core recovery, five 2.5 meter snow pits were sampled for physical statigraphy, major ions, trace element, and heavy metals analysis to assess spatial variability of the environmental impact in this region. Four automatic snow gauges were installed near proposed deep ice coring site for year around records. The seasonal accumulation at the drilling site was ranged from 250 to 300 ?? with density of 0.34 - 0.40 g cm-3. The ice-core stratigraphy analysis has shown that accumulation area seems to lie in the cold infiltration-recrystallization zone. Geochemical analysis of the shallow ice core, snow pit samples collecting during the 2001 field research will be discussed along with meteorological and synoptic data collected at the nearest to Belukha Plateau Akkem, (2050 m) and Kara -Tyurek (3600 ?) stations. A preliminary result has revealed that variability of elementary synoptic processes over the region impact on the amount of precipitation. North Atlantic Oscillation and West Pacific Oscillation indices have inverse associations with average amount of precipitation in Siberia where Altai is located. >http://www.icess.ucsb.edu/%7eaizen/aizen.html

Geochemical characteristics of organic compounds in a permafrost sediment core sample from northeast Siberia, Russia

NASA Technical Reports Server (NTRS)

Matsumoto, G. I.; Friedmann, E. I.; Gilichinsky, D. A.

1995-01-01

We studied total organic carbon (TOC), hydrocarbons and fatty acids in a permafrost sediment core sample (well 6-90, length 32.0 m, 1.5-2.5 Ma BP) from northeast Siberia (approximately 70 degrees N, 158 degrees E), Russia, to elucidate their geochemical features in relation to source organisms and paleoenvironmental conditions. Long-chain n-alkanes and n-alkanoic acids (>C19) were most predominant hydrocarbons and fatty acids, respectively, so organic matter in the sediment core was derived mainly from vascular plants and, to a much smaller extent, from bacteria. Low concentrations of unsaturated fatty acids revealed that organic matter in the sediment core was considerably degraded during and/or after sedimentation. The predominance of vascular plant components, the major ionic components of nonmarine sources, and geological data strongly implied that the sediment layers were formed in shallow lacustrine environments, such as swamp with large influences of tundra or forest-tundra vegetation. Also, no drastic changes in paleoenvironmental conditions for biological activity or geological events, such as sea transgressions or ice-sheet influences, occurred at the sampling site approximately 100 km from the coast of the East Siberian Sea during the late Pliocene an early Pleistocene periods.

Detection of forest stand-level spatial structure in ectomycorrhizal fungal communities.

PubMed

Lilleskov, Erik A; Bruns, Thomas D; Horton, Thomas R; Taylor, D; Grogan, Paul

2004-08-01

Ectomycorrhizal fungal (EMF) communities are highly diverse at the stand level. To begin to understand what might lead to such diversity, and to improve sampling designs, we investigated the spatial structure of these communities. We used EMF community data from a number of studies carried out in seven mature and one recently fire-initiated forest stand. We applied various measures of spatial pattern to characterize distributions at EMF community and species levels: Mantel tests, Mantel correlograms, variance/mean and standardized variograms. Mantel tests indicated that in four of eight sites community similarity decreased with distance, whereas Mantel correlograms also found spatial autocorrelation in those four plus two additional sites. In all but one of these sites elevated similarity was evident only at relatively small spatial scales (< 2.6 m), whereas one exhibited a larger scale pattern ( approximately 25 m). Evenness of biomass distribution among cores varied widely among taxa. Standardized variograms indicated that most of the dominant taxa showed patchiness at a scale of less than 3 m, with a range from 0 to < or =17 m. These results have implications for both sampling scale and intensity to achieve maximum efficiency of community sampling. In the systems we examined, cores should be at least 3 m apart to achieve the greatest sampling efficiency for stand-level community analysis. In some cases even this spacing may result in reduced sampling efficiency arising from patterns of spatial autocorrelation. Interpretation of the causes and significance of these patterns requires information on the genetic identity of individuals in the communities.

Palaeointensity determinations and magnetic properties on Eocene rocks from Izu-Bonin-Mariana forearc (IODP Exp. 352)

NASA Astrophysics Data System (ADS)

Carvallo, C.; Camps, P.; Sager, W. W.; Poidras, T.

2017-09-01

IODP Expedition 352 cored igneous rocks from the Izu-Bonin-Mariana forearc crust. Cores from Sites U1440 and U1441 recovered Eocene basalts and related rocks and cores from Sites U1439 and U1442 recovered Eocene boninites and related rocks. We selected samples from Holes U1439C, U1440B and U1442A for palaeointensity measurements. Hysteresis measurements and high and low-temperature magnetization curves show that samples from Hole U1440B undergo magneto-chemical changes when heated and are mostly composed of single-domain (SD) or pseudo-single-domain (PSD) titanomaghemite. In contrast, the same measurements show that most selected samples from Holes U1439C and U1442A are thermally stable and are composed of either SD or PSD titanomagnetite with very little titanium content, or SD ferromagnetic grains with a large paramagnetic contribution. Thellier-Thellier palaeointensity experiments carried out on U1439C and U1442A samples give a good success rate of 25/60 and Virtual Dipole Moment (VDM) values between 1.3 and 3.5 × 1022 Am2. Multispecimen palaeointensity experiments with the domain-state corrected method carried out on 55 samples from Hole U1440B (divided into four groups) and 20 from Hole U1439C gave poor quality results, but indicated a VDM around 4-6 × 1022 Am2 in Hole U1440B forearc basalts. These results are in agreement with the few, low VDM values previously measured on Eocene rocks. However, they do not support an inverse relationship between field intensity and reversal rate for this period of time, since the Eocene reversal rate was low.

Novel Method of Estimating Metabolic Rates of Soldiers Engaged in Chemical Biological Defense Training

DTIC Science & Technology

2016-12-01

Simplified example of estimating metabolic rate from core temperature using the SCENARIO thermoregulatory model. 7 4 Edgewood training site, Day 1, core... temperature (TC) and metabolic rate (Ṁ). 10 5 Edgewood training site, Day 2, core temperature (TC) and metabolic rate (Ṁ). 11 6 Hayward...training site, Day 1, core temperature (TC) and metabolic rate (Ṁ). 12 7 Hayward training site, Day 2, core temperature (TC) and metabolic rate (Ṁ). 13

Non-destructive Analysis of Oil-Contaminated Soil Core Samples by X-ray Computed Tomography and Low-Field Nuclear Magnetic Resonance Relaxometry: a Case Study

PubMed Central

Mitsuhata, Yuji; Nishiwaki, Junko; Kawabe, Yoshishige; Utsuzawa, Shin; Jinguuji, Motoharu

2010-01-01

Non-destructive measurements of contaminated soil core samples are desirable prior to destructive measurements because they allow obtaining gross information from the core samples without touching harmful chemical species. Medical X-ray computed tomography (CT) and time-domain low-field nuclear magnetic resonance (NMR) relaxometry were applied to non-destructive measurements of sandy soil core samples from a real site contaminated with heavy oil. The medical CT visualized the spatial distribution of the bulk density averaged over the voxel of 0.31 × 0.31 × 2 mm3. The obtained CT images clearly showed an increase in the bulk density with increasing depth. Coupled analysis with in situ time-domain reflectometry logging suggests that this increase is derived from an increase in the water volume fraction of soils with depth (i.e., unsaturated to saturated transition). This was confirmed by supplementary analysis using high-resolution micro-focus X-ray CT at a resolution of ∼10 μm, which directly imaged the increase in pore water with depth. NMR transverse relaxation waveforms of protons were acquired non-destructively at 2.7 MHz by the Carr–Purcell–Meiboom–Gill (CPMG) pulse sequence. The nature of viscous petroleum molecules having short transverse relaxation times (T2) compared to water molecules enabled us to distinguish the water-saturated portion from the oil-contaminated portion in the core sample using an M0–T2 plot, where M0 is the initial amplitude of the CPMG signal. The present study demonstrates that non-destructive core measurements by medical X-ray CT and low-field NMR provide information on the groundwater saturation level and oil-contaminated intervals, which is useful for constructing an adequate plan for subsequent destructive laboratory measurements of cores. PMID:21258437

Advanced Pressure Coring System for Deep Earth Sampling (APRECOS)

NASA Astrophysics Data System (ADS)

Anders, E.; Rothfuss, M.; Müller, W. H.

2009-04-01

Nowadays the recovery of cores from boreholes is a standard operation. However, during that process the mechanical, physical, and chemical properties as well as living conditions for microorganisms are significantly altered. In-situ sampling is one approach to overcome the severe scientific limitations of conventional, depressurized core investigations by recovering, processing, and conducting experiments in the laboratory, while maintaining unchanged environmental parameters. The most successful equipment today is the suite of tools developed within the EU funded projects HYACE (Hydrate Autoclave Coring Equipment) and HYACINTH (Deployment of HYACE tools In New Tests on Hydrates) between 1997 and 2005. Within several DFG (German Research Foundation) projects the Technical University Berlin currently works on concepts to increase the present working pressure of 250 bar as well as to reduce logistical and financial expenses by merging redundant and analogous procedures and scaling down the considerable size of key components. It is also proposed to extend the range of applications for the wireline rotary pressure corer and the sub-sampling and transfer system to all types of soil conditions (soft to highly-consolidated). New modifications enable the tools to be used in other pressure related fields of research, such as unconventional gas exploration (coal-bed methane, tight gas, gas hydrate), CO2 sequestration, and microbiology of the deep biosphere. Expedient enhancement of an overall solution for pressure core retrieval, process and investigation will open the way for a complete on-site, all-purpose, in-situ equipment. The advanced assembly would allow for executing the whole operation sequences of coring, non-destructive measurement, sub-sampling and transfer into storage, measurement and transportation chambers, all in sterile, anaerobic conditions, and without depressurisation in quick succession. Extensive post-cruise handling and interim storage would be dispensable. The complete core processing and preparation of in-situ sample sections for worldwide shipping could be conducted within hours after retrieval.

Estimates of in situ gas hydrate concentration from resistivity monitoring of gas hydrate bearing sediments during temperature equilibration

USGS Publications Warehouse

Riedel, M.; Long, P.E.; Collett, T.S.

2006-01-01

As part of Ocean Drilling Program Leg 204 at southern Hydrate Ridge off Oregon we have monitored changes in sediment electrical resistivity during controlled gas hydrate dissociation experiments. Two cores were used, each filled with gas hydrate bearing sediments (predominantly mud/silty mud). One core was from Site 1249 (1249F-9H3), 42.1 m below seafloor (mbsf) and the other from Site 1248 (1248C-4X1), 28.8 mbsf. At Site 1247, a third experiment was conducted on a core without gas hydrate (1247B-2H1, 3.6 mbsf). First, the cores were imaged using an infra-red (IR) camera upon recovery to map the gas hydrate occurrence through dissociation cooling. Over a period of several hours, successive runs on the multi-sensor track (includes sensors for P-wave velocity, resistivity, magnetic susceptibility and gamma-ray density) were carried out complemented by X-ray imaging on core 1249F-9H3. After complete equilibration to room temperature (17-18??C) and complete gas hydrate dissociation, the final measurement of electrical resistivity was used to calculate pore-water resistivity and salinities. The calculated pore-water freshening after dissociation is equivalent to a gas hydrate concentration in situ of 35-70% along core 1249F-9H3 and 20-35% for core 1248C-4X1 assuming seawater salinity of in situ pore fluid. Detailed analysis of the IR scan, X-ray images and split-core photographs showed the hydrate mainly occurred disseminated throughout the core. Additionally, in core 1249F-9H3, a single hydrate filled vein, approximately 10 cm long and dipping at about 65??, was identified. Analyses of the logging-while-drilling (LWD) resistivity data revealed a structural dip of 40-80?? in the interval between 40 and 44 mbsf. We further analyzed all resistivity data measured on the recovered core during Leg 204. Generally poor data quality due to gas cracks allowed analyses to be carried out only at selected intervals at Sites 1244, 1245, 1246, 1247, 1248, 1249, and 1252. With a few exceptions, data from these intervals yield low to no gas hydrate concentration, which corresponds to estimates from downhole resistivity logs. However, since the gas cracking may be the result of gas hydrate dissociation, this is a biased sampling. Cores that had contained some gas hydrate may have been excluded. ?? 2005 Elsevier B.V. All rights reserved.

Paleomagnetism of the Mesozoic in Alaska. Ph.D. Thesis

NASA Technical Reports Server (NTRS)

Packer, D. R.

1972-01-01

Over 400 oriented cores of Permian, Triassic, Jurassic, and Cretaceous sedimentary and igneous rocks were collected from 34 sites at 10 areas throughout southern Alaska. After magnetic cleaning in successively higher alternating fields 179 samples were considered to be stable and to give statistically consistent results within each site and age group. Due to the lack of a sufficient number of stable samples, the results from Permian, Triassic, and Cretaceous rocks were inconclusive. The nine remaining Jurassic sites represent 100 samples from three general areas in southern Alaska. The southern Alaskan Jurassic paleomagnetic pole is significantly different from the North American Jurassic pole. This suggests that since the Jurassic, southern Alaska must have moved approximately 18 degrees north and rotated 52 degrees clockwise to reach its present position. Tectonic interpretation of these results give a possible explanation for many of the geologic features observed in southern Alaska.

Integrated evaluation of the performance of a more than seven year old permeable reactive barrier at a site contaminated with chlorinated aliphatic hydrocarbons (CAHs)

NASA Astrophysics Data System (ADS)

Muchitsch, Nanna; Van Nooten, Thomas; Bastiaens, Leen; Kjeldsen, Peter

2011-11-01

An important issue of concern for permeable reactive iron barriers is the long-term efficiency of the barriers due to the long operational periods required. Mineral precipitation resulting from the anaerobic corrosion of the iron filings and bacteria present in the barrier may play an important role in the long-term performance. An integrated study was performed on the Vapokon permeable reactive barrier (PRB) in Denmark by groundwater and iron core sample characterization. The detailed field groundwater sampling carried out from more than 75 well screens up and downstream the barrier showed a very efficient removal (> 99%) for the most important CAHs (PCE, TCE and 1,1,1-TCA). However, significant formation of cis-DCE within the PRB resulted in an overall insufficient efficiency for cis-DCE removal. The detailed analysis of the upstream groundwater revealed a very heterogeneous spatial distribution of contaminant loading into the PRB, which resulted in that only about a quarter of the barrier system is treating significant loads of CAHs. Laboratory batch experiments using contaminated groundwater from the site and iron material from the core samples revealed that the aged iron material performed equally well as virgin granular iron of the same type based on determined degradation rates despite that parts of the cored iron material were covered by mineral precipitates (especially iron sulfides, carbonate green rust and aragonite). The PCR analysis performed on the iron core samples indicated the presence of a microbial consortium in the barrier. A wide range of species were identified including sulfate and iron reducing bacteria, together with Dehalococcoides and Desulfuromonas species indicating microbial reductive dehalogenation potential. The microbes had a profound effect on the performance of the barrier, as indicated by significant degradation of dichloromethane (which is typically unaffected by zero valent iron) within the barrier.

Chemical composition of core samples from Newark Basin, a potential carbon sequestration site

NASA Astrophysics Data System (ADS)

Seltzer, A. M.; Yang, Q.; Goldberg, D.

2012-12-01

Injection of carbon dioxide into deep saline aquifers has been identified as a promising mitigation option of greenhouse gases, the successful management of which is considered to be one of the most urgent and important challenges. Given the high energy production in the New York metropolitan area, the Newark Basin region is considered to be a potential future sequestration site. However, the risk of an upward leak of sequestered CO2, especially to a shallow drinking water aquifer, is a key concern facing geological sequestration as a safe and viable mitigation option. In this study, we measured the chemical composition of 25 cores from various depths throughout Newark Basin as a precursor for an ex situ incubation experiment using these rock samples and aquifer water to simulate a leak event. Inductively coupled plasma mass spectrometry analysis of microwave-assisted digested rock powders and X-ray fluorescence analysis of the rock powders were conducted to obtain the concentrations of major and trace elements. Most of the major and trace elements show wide concentration ranges at one to two orders of magnitude. Understanding the chemical composition of these Newark Basin core samples is important not only for characterizing materials used for the later lab incubation, but also for gaining a broader understanding of the chemistry of the Newark Basin and profiling the region according to the varying risks associated with a leak of sequestered CO2 to a drinking water aquifer.

Measurement of unsaturated hydraulic properties and evaluation of property-transfer models for deep sedimentary interbeds, Idaho National Laboratory, Idaho

USGS Publications Warehouse

Perkins, Kimberlie; Johnson, Brittany D.; Mirus, Benjamin B.

2014-01-01

During 2013–14, the USGS, in cooperation with the U.S. Department of Energy, focused on further characterization of the sedimentary interbeds below the future site of the proposed Remote Handled Low-Level Waste (RHLLW) facility, which is intended for the long-term storage of low-level radioactive waste. Twelve core samples from the sedimentary interbeds from a borehole near the proposed facility were collected for laboratory analysis of hydraulic properties, which also allowed further testing of the property-transfer modeling approach. For each core sample, the steady-state centrifuge method was used to measure relations between matric potential, saturation, and conductivity. These laboratory measurements were compared to water-retention and unsaturated hydraulic conductivity parameters estimated using the established property-transfer models. For each core sample obtained, the agreement between measured and estimated hydraulic parameters was evaluated quantitatively using the Pearson correlation coefficient (r). The highest correlation is for saturated hydraulic conductivity (Ksat) with an r value of 0.922. The saturated water content (qsat) also exhibits a strong linear correlation with an r value of 0.892. The curve shape parameter (λ) has a value of 0.731, whereas the curve scaling parameter (yo) has the lowest r value of 0.528. The r values demonstrate that model predictions correspond well to the laboratory measured properties for most parameters, which supports the value of extending this approach for quantifying unsaturated hydraulic properties at various sites throughout INL.

A Brunhes-Matuyama polarity transition record from anoxic sediments in the South Atlantic (Ocean Drilling Program Hole 1082C)

NASA Astrophysics Data System (ADS)

Yamazaki, T.; Oda, H.

2001-08-01

A paleomagnetic study was performed on Hole 1082C sediment cores taken during the Ocean Drilling Program (ODP) Leg 175 in the South Atlantic in order to obtain a high-resolution Brunhes-Matuyama (B/M) polarity transition record. An average sedimentation rate was as high as 10 cm/kyr. The cores consist of strongly anoxic sediments, which is common for the areas of large material supply. Anoxic sediments, which are geochemically quite active, were considered to be unsuitable for studies on detailed behavior of the geomagnetic field such as polarity transitions. For global site distribution, however, it is necessary to make efforts to retrieve paleomagnetic records from such sediments. A continuous record of directional changes around the transition was obtained from U-channel samples after cleaning by stepwise alternating-field (AF) demagnetization. Consistency of the record was checked using discrete samples taken from the other half of the cores. The coring-induced magnetic overprint of radial-inward direction, which has often been reported from ODP piston-cores, was negligibly small in our cores. Relative paleointensity variation was estimated from remanent intensities of the discrete samples normalized by artificial remanences. Our record shows following features of the B/M transition similar to those already reported by previous studies. A zone of large directional fluctuations with low paleointensities occurs just before the main transition (788 to 795 ka based on the oxygen-isotope stratigraphy), which would correspond to the "precursor" of Hartl and Tauxe (1996). The virtual geomagnetic poles (VGPs) at the precursor lie along the so-called preferred longitudinal bands over the north-south Americas and Australia-east Asia. After the main transition from the reversed to normal polarity, VGPs stayed in the middle-to-high latitudes over the North America with an intermediate paleointensity for about 5~kyrs, and then moved in the vicinity of the North Pole with full recovery of intensity. Such behavior was reported by Oda et al. (2000). These similarities suggest that the anoxic sediments at Site 1082 could record the behavior of the geomagnetic field rather faithfully, although the remanence may be of chemical origin.

A comparison of petrophysical data inputs for establishing time-depth relationships: a guide for future drilling expeditions

NASA Astrophysics Data System (ADS)

Boaga, J.; Sauermilch, I.; Mateo, Z. R. P.

2017-12-01

Time-depth relationships (TDR) are crucial in correlating drillhole and core information to seismic reflection profiles, for accurate resource estimation, scientific interpretation and to guide drilling operations. Conventional seismic time-depth domain conversion utilizes downhole sonic logs (DSI), calibrated using available checkshot data, which are local travel times from the surface to a particular depth. Scientific drilling programs (ODP and IODP) also measure P-wave velocity (PWL or C) on recovered core samples. Only three percent of all ODP and IODP sites record all three velocity measurements, however this information can be instructive as sometimes these data input show dissimilar TDR. These representative sites provide us with an opportunity to perform a comparative analysis highlighting the differences and similarities of TDRs derived from checkshot, downhole, and laboratory measurements. We then discuss the impact of lithology, stratigraphy, water column and other petrophysical properties in the predictive accuracy of TDR calculations, in an effort to provide guidance for future drilling and coring expeditions.

Data management integration for biomedical core facilities

NASA Astrophysics Data System (ADS)

Zhang, Guo-Qiang; Szymanski, Jacek; Wilson, David

2007-03-01

We present the design, development, and pilot-deployment experiences of MIMI, a web-based, Multi-modality Multi-Resource Information Integration environment for biomedical core facilities. This is an easily customizable, web-based software tool that integrates scientific and administrative support for a biomedical core facility involving a common set of entities: researchers; projects; equipments and devices; support staff; services; samples and materials; experimental workflow; large and complex data. With this software, one can: register users; manage projects; schedule resources; bill services; perform site-wide search; archive, back-up, and share data. With its customizable, expandable, and scalable characteristics, MIMI not only provides a cost-effective solution to the overarching data management problem of biomedical core facilities unavailable in the market place, but also lays a foundation for data federation to facilitate and support discovery-driven research.

The Hominin Sites and Paleolakes Drilling Project (HSPDP): Understanding the paleoenvironmental and paleoclimatic context of human origins through continental drilling

NASA Astrophysics Data System (ADS)

Cohen, Andrew S.; Campisano, Christopher; Asrat, Asfawossen; Arrowsmith, Ramon; Deino, Alan; Feibel, Craig; Hill, Andrew; Kingston, John; Lamb, Henry; Lowenstein, Tim; Olago, Daniel; Bernhart Owen, R.; Renaut, Robin; Schabitz, Frank; Trauth, Martin

2015-04-01

The influence of climate and environmental history on human evolution is an existential question that continues to be hotly debated, in part because of the paucity of high resolution records collected in close proximity to the key fossil and archaeological evidence. To address this issue and transform the scientific debate, the HSPDP was developed to collect lacustrine sediment drill cores from basins in Kenya and Ethiopia that collectively encompass critical time intervals and locations for Plio-Quaternary human evolution in East Africa. After a 17 month campaign, drilling was completed in November, 2014, with over 1750m of core collected from 11 boreholes from five areas (1930m total drilling length, avg. 91% recovery). The sites, from oldest to youngest, include 1) N. Awash, Ethiopia (~3.5-2.9Ma core interval); 2) Baringo-Tugen Hills, Kenya (~3.3-2.5Ma); 3) West Turkana, Kenya (~1.9-1.4Ma); L. Magadi, Kenya (0.8-0Ma) and the Chew Bahir Basin, Ethiopia (~0.5-0Ma). Initial core description (ICD) and sampling for geochronology, geochemistry and paleoecology studies had been completed by mid2014, with the two remaining sites (Magadi and Chew Bahir) scheduled for ICD work in early 2015. Whereas the primary scientific targets were the lacustrine deposits from the hominin-bearing basin depocenters, many intervals of paleosols (representative of low lake stands and probable arid periods) were also encountered in drill cores. Preliminary analyses of drill core sedimentology and geochemistry show both long-term lake level changes and cyclic variability in lake levels, both of which may be indicative of climatic forcing events of interest to paleoanthropologists. Authors of this abstract also include the entire HSPDP field team.

Ue Project "cheap GSHPs": the Geoexchange Fieldlab

NASA Astrophysics Data System (ADS)

Galgaro, Antonio; Cultrera, Matteo; Dalla Santa, Giorgia; Bertermann, David; Muller, Johannes; De Carli, Michele; Emmi, Giuseppe; Zarrella, Angelo; Bernardi, Adriana; Di Tuccio, Maria; Vivarelli, Arianna; Pockelé, Luc; Mezzasalma, Giulia; Psyk, Mario; Righini, Davide; Bernini, Michele

2017-04-01

The CHEAP - GSHPs Horizon 2020 project (No. 657982) focuses on the development of more efficient and safe shallow geothermal systems and the reduction of time consuming and installation costs. One of its most important objectives is the development of the design of new coaxial steel GSHEs and of newly designed helical heat basket type GSHE by means of innovative installation methodologies and drilling machines. For this purpose, in Molinella test site (Bologna, Italy) several types of borehole heat exchangers have been built. The Molinella test site is the open-air laboratory where several types of ground heat exchangers, such as helical heat basket and double-U and coaxial probes, can be directly compared by means of GRT tests, cores thermal measurement, and optical fibers measurements. Moreover, in this test site, new drilling machines and techniques are being tested. Given a geological setting and thermal load, the heat exchange capacity of a ground heat exchanger depends on the used materials and probe dimensions (length, diameter and thickness). In Molinella, in an area of 300m2, 7 different probes are installed: 4 coaxial probes of different materials and different length (96 and 50m) and diameters of internal and external tubes, 2 heat baskets (15m length, different diameter and different pitch) and a traditional double-U (50 m length). The monitoring equipment is constituted by a piezometer 25m long, a monitoring point instrumented with a hybrid fibre optical cable 100m long, and a standard GRT device. The local stratigraphy is known from a 100m core sample, made on purpose. The lithological sequence is typical of a quaternary floodplain deposition environment, rich in silt and silty clay deposits, alternated with sandy layers. For all the main recognized layers, the thermal properties (conductivity and capacity) have been directly measured on the collected core samples on site in order to maintain their natural water content. The thermal exchange capacities of the tested GSHEs are directly detected both by comparing the GRT test results and by means of numerical analysis based on different modelling approaches. The Molinella test site is particularly remarkable for the possibility to directly compare the energetic efficiency of the tested GSHEs. The GRT results can be compared with the mathematical models outputs and with the thermal measurements directly performed on the sediments core samples. The coupling of traditional GRT and optical fibre temperature recording system allows sharing the data in order to obtain the thermal contribution of the different underground layers interested by the heat exchange processes. The Molinella test site therefore represents a very extraordinary possibility to improve the knowledge of thermal exchange processes in shallow geothermal systems.

Multiproxy record of the last interglacial (MIS 5e) off central and northern California, U.S.A., from Ocean Drilling Program sites 1018 and 1020

USGS Publications Warehouse

Poore, Richard Z.; Dowsett, H.J.; Barron, J.A.; Heusser, L.; Ravelo, A.C.; Mix, A.

2000-01-01

Environmental and climatic conditions during the last interglacial (about 125,000 years ago) along the Central and Northern California coastal region are interpreted from study of marine cores recovered by the Ocean Drilling Program at sites 1018 and 1020. Marine microfossil and pollen assemblages, oxygen isotopes in benthic foraminifers, physical properties, and calcium carbonate contents of cored sediments are proxies indicating strong links between the marine and terrestrial environments during marine isotope stage 5 (MIS 5). At the beginning of the last interglacial (MIS 5e), reduction in global ice volume, increase in surface temperature, and warming of air temperature along the Central and Northern California coast were synchronous within the resolution of our sampling record.

X-ray fluorescence results from IODP Expedition 355 sediments in Laxmi Basin, eastern Arabian Sea: Insights into late Miocene and Pleistocene carbonate production and burial and possible variations in monsoon intensit

NASA Astrophysics Data System (ADS)

Bowen, M. G.; Kulhanek, D. K.; Lyle, M. W.; Hahn, A.

2017-12-01

Variations in CaCO3 accumulation on the seafloor depend on a number of factors, including productivity of carbonate-producing organisms in the overlying water column, input of siliciclastic material from nearby continents, and changes in ocean chemistry. These factors are affected by variations in tectonics and climate. Here we use X-ray fluorescence (XRF) core scanning data to develop high-resolution chemical profiles calibrated with discrete samples to examine changes in carbonate production and burial in the eastern Arabian Sea. International Ocean Discovery Program (IODP) Expedition 355 cored two sites in the Indus Fan in Laxmi Basin. We scanned the Pleistocene composite sections from both sites at 2 cm resolution ( 150-300 year sampling resolution) using the Avaatech XRF core scanner at the IODP Gulf Coast Repository. In addition, we scanned a hemipelagic interval dated to the late Miocene ( 8 to 6 Ma) that spans the late Miocene climate transition to drier conditions globally, as documented by an expansion in C4 plants. The 2 cm scanning resolution represents 500 years between samples for the upper Miocene section. We used carbonate measurements on discrete samples to calibrate the XRF data, supplemented by analysis using a quantitative benchtop XRF at the University of Bremen. We find large variability in carbonate content in the Pleistocene and upper Miocene, varying from 15-80 wt%, with higher carbonate content correlating with lighter colored sediment. The aluminosilicate composition varies in part because of carbonate dilution but also because of changes in the source of clays and turbidites through the section. We also explore the use of chemical ratios to better understand the variations through the section. Changes in Ca/Fe (biogenic/terrestrial component) and Rb/Zr (fine/coarse grained) match well with visual observation of sediment composition in the cores. We can combine these with the oxygen isotope-derived age model for the Pleistocene section to examine orbital-scale variations in carbonate production and terrigenous input at the sites. We also explore proxies for precipitation (Ti/Ca) and weathering (Fe/K and Al/K) to elucidate changes in monsoon strength during the Pleistocene, although these results are preliminary.

Archive of sediment data from vibracores collected in 2010 offshore of the Mississippi barrier islands

USGS Publications Warehouse

Kelso, Kyle W.; Flocks, James G.

2015-01-01

Selection of the core site locations was based on geophysical surveys conducted around the islands from 2008 to 2010. The surveys, using acoustic systems to image and interpret the nearsurface stratigraphy, were conducted to investigate the geologic controls on island evolution. This data series serves as an archive of sediment data collected from August to September 2010, offshore of the Mississippi barrier islands. Data products, including descriptive core logs, core photographs, results of sediment grain-size analyses, sample location maps, and geographic information system (GIS) data files with accompanying formal Federal Geographic Data Committee (FDGC) metadata can be downloaded from the data products and downloads page.

Solid-phase data from cores at the proposed Dewey Burdock uranium in-situ recovery mine, near Edgemont, South Dakota

USGS Publications Warehouse

Johnson, Raymond H.; Diehl, Sharon F.; Benzel, William M.

2013-01-01

This report releases solid-phase data from cores at the proposed Dewey Burdock uranium in-situ recovery site near Edgemont, South Dakota. These cores were collected by Powertech Uranium Corporation, and material not used for their analyses were given to the U.S. Geological Survey for additional sampling and analyses. These additional analyses included total carbon and sulfur, whole rock acid digestion for major and trace elements, 234U/238U activity ratios, X-ray diffraction, thin sections, scanning electron microscopy analyses, and cathodoluminescence. This report provides the methods and data results from these analyses along with a short summary of observations.

Trial coring in LLRW trenches at Chalk River

DOE Office of Scientific and Technical Information (OSTI.GOV)

Donders, R.E.; Killey, R.W.D.; Franklin, K.J.

1996-12-31

As part of a program to better characterize the low-hazard radioactive waste managed by AECL at Chalk River, coring techniques in waste trenches are being assessed. Trial coring has demonstrated that sampling in waste regions is possible, and that boreholes can be placed through the waste trenches. Such coring provides a valuable information gathering technique. Information available from trench coring includes: (1) trench cover depth, waste region depth, waste compaction level, and detailed stratigraphic data; (2) soil moisture content and facility drainage performance; (3) borehole gamma logs that indicate radiation levels in the region of the borehole; (4) biochemical conditionsmore » in the waste regions, vadose zone, and groundwater; (5) site specific information relevant to contaminant migration modelling or remedial actions; (6) information on contaminant releases and inventories. Boreholes through the trenches can also provide a means for early detection of potential contaminant releases.« less

VARIATIONS IN MINERAL MATTER CONTENT OF A PEAT DEPOSIT IN MAINE RESTING ON GLACIO-MARINE SEDIMENTS.

USGS Publications Warehouse

Cameron, Cornelia C.; Schruben, Paul

1983-01-01

The Great Heath, Washington County, Maine, is an excellent example of a multidomed ombrotrophic peatland resting on a gently undulating surface of glacio-marine sediments and towering above modern streams. A comprehensive study sponsored by the Geological Survey of Maine in cooperation with the U. S. Geological Survey included preparation of a contoured surficial geology map on which are located 81 core sites. Eight cross sections accompany the map showing occurrence and thickness of three types of organic material and locations of cored sample analyses. Refs.

K1-95-HW, cruise report 1995: preliminary results. Phase III: sediment chemistry and biological sampling survey

USGS Publications Warehouse

Torresan, M.E.; Hampton, M.A.; Barber, J.H.; Wong, F.L.

1995-01-01

Mamala Bay, off the south shore of the island of Oahu, has been used as a repository of dredged material primarily from Pearl and Honolulu Harbors for over a century. The U.S. Geological Survey, U.S. Army Corps of Engineers, and the U.S. Environmental Protection Agency are conducting an integrated study on the distribution and character of dredged materials as well as the effects of dredged material on the marine environment. A three phase study is providing information to evaluate the effects on seafloor substrate and the benthic fauna. The studies include geophysical profiling and imaging, bottom photography, sampling, chemical and physical analyses of sediment, and evaluations of the benthic population, population density, and adverse impacts to the benthic fauna. Phase 1, conducted in 1993, inventoried the seafloor via remote sensing. Sidescan sonar and subbottom profilers characterized the seafloor in and around the disposal sites, and the resulting products reveal the character and extent of the dredged material. These data were used to plan Phase 2 in 1994, a sampling program that employed subbottom profilers, video and still photography, and seafloor sampling to ground truth the sonar mosaic and identify the seafloor substrates responsible for the various acoustic signatures on the sonar images and subbottom profiles. Box coring provided the samples necessary to distinguish dredged material from native sediment, and for the chemical analyses used to determine contaminant concentrations. Phase 3 studies conducted in June of 1995 consisted of box core sampling for chemical and biological analyses. Specific studies include: infaunal taxonomy and population density, bioassay/bioaccumulation, sediment chemistry, and post-disposal resuspension and transport. The 1995 survey, conducted June 14 through 17, resulted in the collection of 39 box cores from 20 different stations. Multiple box cores were composited at 7 different locations occupied in 1994, to provide the material required for the 7 bioassay and bioaccumulation analyses currently underway (Figure 1). Seventeen of the 20 stations occupied provided the biological samples for the benthic infaunal identification and population density study conducted by Dr. Julie Brock of the University of Hawaii, and the sediment chemistry analyses conducted (and completed) by Quanterra Environmental Laboratories (Figure 1). Seven of the 20 stations occupied in 1995 were occupied in 1994, and provide the data for direct comparison of sediment chemistry at the same sites from two consecutive years. The sum total of the data collected from all three phases of the monitoring program will provide the U.S. Army Corps of Engineers and the U.S. Environmental Protection Agency with the information required to make informed decisions as to the management of the South Oahu disposal site in Mamala Bay.

Rescuing the Cahoon Mine drill cores: Opportunities for modern mapping of the ca. 1.7 Ga Freedom Formation in southern Wisconsin

NASA Astrophysics Data System (ADS)

Stanley, V.; Stewart, E.

2016-12-01

Rock cores collected during historic mineral exploration can provide invaluable data for modern analyses, but only if the samples are properly curated. The Cahoon Mine operated in Baraboo, WI during the 1910's and produced iron ore from the ca. 1.7 Ga Freedom Formation. The Freedom Formation is part of the well-known Baraboo-interval stratigraphy and is only present in the subsurface of Wisconsin (Weidman, 1904). Seventeen exploratory drill cores were rescued by Wisconsin Geological and Natural History Survey (WGNHS) from the original drying house at the mine site. The condition of the containers endangered the stratigraphic context of the collection; identifiers and depth markings were often obscured or lost. The individual core pieces were coated in residue and dust. Most of what is known about the Freedom Formation is from core logs and master's theses from the early 1900's (Leith, 1935; Schmidt, 1951). Ongoing subsurface mapping of the Baraboo-interval sediments and underlying basement of southern Wisconsin integrates new and existing subsurface and regional geophysical datasets. Mapping involves calibrating unique signals in regional aeromagnetic data to known lithology from drill core and cuttings. The Freedom Formation is especially important in this process as its iron-rich composition and regional continuity causes it to have a somewhat unique signal in regional aeromagnetic data. The Cahoon Mine cores in the WGNHS repository are the most extensive collection of physical samples from the Freedom Formation still in existence. We are in the process of curating the cores to facilitate their use in ongoing bedrock mapping. Today the cost and logistics of extensive sampling of this unit makes the existing core collection irreplaceable. We transferred the material to new containers, digitally recorded metadata, and created archival labels. As a result of this effort, the Cahoon Mine cores are now stored in a format that is physically and digitally accessible.

Seismic and chronostratigraphic results from SHALDRIL II, northwestern Weddell Sea

USGS Publications Warehouse

Anderson, J.B.; Wellner, J.; Wise, S.; Bohaty, S.; Manley, P.; Smith, T.; Weaver, F.; Kulhanek, D.

2007-01-01

The 2006 SHALDRIL II cruise was conducted in the northwestern Weddell Sea, with primary drilling targets in the James Ross Basin. A site drilled along the northern edge of the James Ross Basin sampled either latest Eocene or earliest Oligocene deposits, providing a lower chronostratigraphic benchmark for our seismic stratigraphic age model. Severe sea ice conditions forced abandonment of several of the James Ross Basin sites. Three alternate sites were drilled along the southern flank of the Joinville Plateau. Seismic data from the area show a thick, southward dipping stratigraphic succession with no conspicuous gaps. Three drill sites sampled this succession and recovered Oligocene, middle Miocene, and early Pliocene strata overlain by a thin drape of Pleistocene deposits. The Pliocene-Miocene boundary appears to be represented by a disconformity within the cored interval. Otherwise, this is one of the most complete post-Eocene successions anywhere on Antarctica and its adjacent margins

Data report: Mid-Pliocene diatom assemblages at sites 1016, 1021, and 1022

USGS Publications Warehouse

Barron, John A.; Nessler, Susan; Miller, Christine M.; Peters, Lori L.

2000-01-01

Diatom assemblages from the middle part of the Pliocene (3.2-2.5 Ma) were investigated from Ocean Drilling Program Sites 1016, 1021, and 1022 in an effort to infer paleotemperature fluctuations off California.Diatoms are very sparse in virtually all of the samples that were examined from Sites 1016 and 1021. This is presumably because these sites were seaward (west) of the coastal zone of diatom productivity during the middle part of the Pliocene.Diatoms are relatively common in the vast majority of samples that were examined from Hole 1022A. Diatom assemblages are dominated by Chaetoceros spores (a coastal upwelling component), the cold-water (subarctic) taxa Neodenticula kamtschatica and its descendant Neodenticula koizumii, and Thalassionema nitzschioides, a temperate taxon that is typically found at the seaward edge of coastal upwelling zones. Paleotemperature interpretations, however, are not possible at this time because of the scarcity of comparative modern core-top data.

The Pleistocene Eastern Equatorial Pacific: Insights from a New Carnegie Platform Stratigraphic Record

NASA Astrophysics Data System (ADS)

Gwizd, S.; Lea, D. W.

2016-12-01

Renewed interest in a classic Eastern Equatorial Pacific paleoceanographic site at 3° 35.85' S, 83° 57.79' W, previous site of cores V19-29 and TR163-31, prompted a re-coring in 2009 using the recently developed CDH giant piston coring system on cruise KNR195-5. Giant piston core CDH-36 (3225 m depth, 42.61 m length) nearly triples the length of previous cores at this site. When spliced together with companion multicore MC-34A (0.36 m length), these two cores generate continuous stratigraphy throughout most of the middle Pleistocene, and include recognized stratigraphic tie points ash layer "L" (Ninkovich and Shackleton, 1975) and the extinction of pink G. ruber. A new age model utilizing Bayesian analysis of 17 N. dutertrei radiocarbon dates in MC-34A and the top 3.4 m of CDH-36, and alignment of a new CDH-36 δ18O record with the LR04 benthic stack (Lisiecki and Raymo, 2005), demonstrates that this new "Carnegie Platform" (CP) record extends from 0 to 720 ka (MIS 18), tripling the timescale of previous studies, with an average sedimentation rate of 7 cm/kyr. The CP C. wuellerstorfi δ18O and δ13C records reveal strong consistencies in timing and extent of glacial and interglacial episodes with previously studied regional records. Coarse fraction percentage (%CF) ([coarse fraction/bulk dry sample] * 100) is also evaluated throughout the CP core in order to qualitatively assess dissolution cycles. The CP %CF dataset primarily records Pleistocene dissolution cycles, yet exhibits variability representative of potential local bathymetric and hydrographic effects. The timing of %CF cyclicity is consistent with processes which affect basin-wide calcium carbonate dissolution cycles, including changes in terrestrial carbon input to the oceans and changes in water mass ventilation (Shackleton, 1977; Toggweiler et al., 2006; Sexton and Barker, 2012). Establishing the stratigraphy of the CP record provides the first step towards a more thorough and extended analysis of this important Eastern Equatorial Pacific site.

Lunar soils grain size catalog

NASA Technical Reports Server (NTRS)

Graf, John C.

1993-01-01

This catalog compiles every available grain size distribution for Apollo surface soils, trench samples, cores, and Luna 24 soils. Original laboratory data are tabled, and cumulative weight distribution curves and histograms are plotted. Standard statistical parameters are calculated using the method of moments. Photos and location comments describe the sample environment and geological setting. This catalog can help researchers describe the geotechnical conditions and site variability of the lunar surface essential to the design of a lunar base.

Conceptual hydrogeologic framework of the shallow aquifer system at Virginia Beach, Virginia

USGS Publications Warehouse

Smith, Barry S.; Harlow, George E.

2002-01-01

The hydrogeologic framework of the shallow aquifer system at Virginia Beach was revised to provide a better understanding of the distribution of fresh ground water, its potential use, and its susceptibility to contamination. The revised conceptual framework is based primarily on analyses of continuous cores and downhole geophysical logs collected at 7 sites to depths of approximately 200 ft.The shallow aquifer system at Virginia Beach is composed of the Columbia aquifer, the Yorktown confining unit, and the Yorktown-East-over aquifer. The shallow aquifer system is separated from deeper units by the continuous St. Marys confining unit.The Columbia aquifer is defined as the predominantly sandy surficial deposits above the Yorktown confining unit. The Yorktown confining unit is composed of a series of very fine sandy to silty clay units of various colors at or near the top of the Yorktown Formation. The Yorktown confining unit varies in thickness and in composition, but on a regional scale is a leaky confining unit. The Yorktown-Eastover aquifer is defined as the predominantly sandy deposits of the Yorktown Formation and the upper part of the Eastover Formation above the confining clays of the St. Marys Formation. The limited areal extent of highly permeable deposits containing freshwater in the Yorktown-Eastover aquifer precludes the installation of highly productive freshwater wells over most of the city. Some deposits of biofragmental sand or shell hashes in the Yorktown-Eastover aquifer can support high-capacity wells.A water sample was collected from each of 10 wells installed at 5 of the 7 core sites to determine the basic chemistry of the aquifer system. One shallow well and one deep well was installed at each site. Concentrations of chloride were higher in the water from the deeper well at each site. Concentrations of dissolved iron in all of the water samples were higher than the U.S. Environmental Protection Agency Secondary Drinking Water Regulations. Concentrations of manganese and chloride were higher than the Secondary Drinking Water Regulations in samples from some wells.In the humid climate of Virginia Beach, the periodic recharge of freshwater through the sand units of the shallow aquifer system occurs often enough to create a dynamic equilibrium whereby freshwater flows continually down and away from the center of the ridges to mix with and sweep brackish water and saltwater back toward the tidal rivers, bays, salt marshes, and the Atlantic Ocean.The aquifers and confining units of the shallow aquifer system at Virginia Beach are heterogeneous, discontinuous, and without exact marker beds, which makes correlations in the study area difficult. Investigations using well cuttings, spot cores, or split-spoon samples with geophysical logs are not as definitive as continuous cores for determining or correlating hydrogeologic units. Future investigations of the shallow aquifer system would benefit by collecting continuous cores.

Aquifer Recharge Estimation In Unsaturated Porous Rock Using Darcian And Geophysical Methods.

NASA Astrophysics Data System (ADS)

Nimmo, J. R.; De Carlo, L.; Masciale, R.; Turturro, A. C.; Perkins, K. S.; Caputo, M. C.

2016-12-01

Within the unsaturated zone a constant downward gravity-driven flux of water commonly exists at depths ranging from a few meters to tens of meters depending on climate, medium, and vegetation. In this case a steady-state application of Darcy's law can provide recharge rate estimates.We have applied an integrated approach that combines field geophysical measurements with laboratory hydraulic property measurements on core samples to produce accurate estimates of steady-state aquifer recharge, or, in cases where episodic recharge also occurs, the steady component of recharge. The method requires (1) measurement of the water content existing in the deep unsaturated zone at the location of a core sample retrieved for lab measurements, and (2) measurement of the core sample's unsaturated hydraulic conductivity over a range of water content that includes the value measured in situ. Both types of measurements must be done with high accuracy. Darcy's law applied with the measured unsaturated hydraulic conductivity and gravitational driving force provides recharge estimates.Aquifer recharge was estimated using Darcian and geophysical methods at a deep porous rock (calcarenite) experimental site in Canosa, southern Italy. Electrical Resistivity Tomography (ERT) and Vertical Electrical Sounding (VES) profiles were collected from the land surface to water table to provide data for Darcian recharge estimation. Volumetric water content was estimated from resistivity profiles using a laboratory-derived calibration function based on Archie's law for rock samples from the experimental site, where electrical conductivity of the rock was related to the porosity and water saturation. Multiple-depth core samples were evaluated using the Quasi-Steady Centrifuge (QSC) method to obtain hydraulic conductivity (K), matric potential (ψ), and water content (θ) estimates within this profile. Laboratory-determined unsaturated hydraulic conductivity ranged from 3.90 x 10-9 to 1.02 x 10-5 m/s over a volumetric water content range from 0.1938 to 0.4311 m3/m3. Using these measured properties, the water content estimated from geophysical measurements has been used to identify the unsaturated hydraulic conductivity indicative of the steady component of the aquifer recharge rate at Canosa.

Aerobic microbial taxa dominate deep subsurface cores from the Alberta oil sands.

PubMed

Ridley, Christina M; Voordouw, Gerrit

2018-06-01

Little is known about the microbial ecology of the subsurface oil sands in Northern Alberta, Canada. Biodegradation of low molecular weight hydrocarbons by indigenous microbes has enriched high molecular weight hydrocarbons, resulting in highly viscous bitumen. This extreme subsurface environment is further characterized by low nutrient availability and limited access to water, thus resulting in low microbial biomass. Improved DNA isolation protocols and increasingly sensitive sequencing methods have allowed an in-depth investigation of the microbial ecology of this unique subsurface environmental niche. Community analysis was performed on core samples (n = 62) that were retrieved from two adjacent sites located in the Athabasca Oil Sands at depths from 220 to 320 m below the surface. Microbial communities were dominated by aerobic taxa, including Pseudomonas and Acinetobacter. Only one core sample microbial community was dominated by anaerobic taxa, including the methanogen Methanoculleus, as well as Desulfomicrobium and Thauera. Although the temperature of the bitumen-containing subsurface is low (8°C), two core samples had high fractions of the potentially thermophilic taxon, Thermus. Predominance of aerobic taxa in the subsurface suggests the potential for in situ aerobic hydrocarbon degradation; however, more studies are required to determine the functional role of these taxa within this unique environment.

Fire Effects on Soil and Dissolved Organic Matter in a Southern Appalachian Hardwood Forest: Movement of Fire-Altered Organic Matter Across the Terrestrial-Aquatic Interface Following the Great Smoky Mountains National Park Fire of 2016

NASA Astrophysics Data System (ADS)

Matosziuk, L.; Gallo, A.; Hatten, J. A.; Heckman, K. A.; Nave, L. E.; Sanclements, M.; Strahm, B. D.; Weiglein, T.

2017-12-01

Wildfire can dramatically affect the quantity and quality of soil organic matter (SOM), producing thermally altered organic material such as pyrogenic carbon (PyC) and polyaromatic hydrocarbons (PAHs). The movement of this thermally altered material through terrestrial and aquatic ecosystems can differ from that of unburned SOM, with far-reaching consequences for soil carbon cycling and water quality. Unfortunately, due to the rapid ecological changes following fire and the lack of robust pre-fire controls, the cycling of fire-altered carbon is still poorly understood. In December 2016, the Chimney Tops 2 fire in Great Smoky Mountains National Park burned over co-located terrestrial and aquatic NEON sites. We have leveraged the wealth of pre-fire data at these sites (chemical, physical, and microbial characterization of soils, continuous measurements of both soil and stream samples, and five soil cores up to 110 cm in depth) to conduct a thorough study of the movement of fire-altered organic matter through terrestrial and aquatic ecosystems. Stream samples have been collected weekly beginning 5 weeks post-fire. Grab samples of soil were taken at discrete time points in the first two months after the fire. Eight weeks post-fire, a second set of cores was taken and resin lysimeters installed at three different depths. A third set of cores and grab samples will be taken 8-12 months after the fire. In addition to routine soil characterization techniques, solid samples from cores and grab samples at all time points will be analyzed for PyC and PAHs. To determine the effect of fire on dissolved organic matter (DOM), hot water extracts of these soil samples, as well as the stream samples and lysimeter samples, will also be analyzed for PyC and PAHs. Selected samples will be analyzed by 1D- and 2D-NMR to further characterize the chemical composition of DOM. This extensive investigation of the quantity and quality of fire-altered organic material at discrete time points will provide insight into the production and cycling of thermally-altered SOM and DOM. We hypothesize that PyC will be an important source of SOM to surface mineral soil horizons, and that the quantity of DOM will increase after fire, providing a rapid pulse of C to deep soils and aquatic systems.

Using a network of core samples to explore hydroclimatic proxy relationships within the sediments of an alpine, glacier-fed lake

NASA Astrophysics Data System (ADS)

Hodder, Kyle; Suchan, Jared

2015-04-01

Spatial and temporal variability of recent lacustrine sedimentation rates are examined for glacier-fed Mud Lake, in the Monashee Mountains of British Columbia. Clastic varve sequences in alpine, glacier-fed environments have been linked elsewhere with temperature (summer, annual), precipitation (autumn, total snowpack), and runoff (glacial, floods), and the use of varved sediments as hydroclimatic proxies is well-developed from single, but rarely multiple, core samples. In this study, a network of sediment cores (n=63) were extracted using a dense grid-sampling scheme within the 2.5 km2 distal lake basin to assess varve thickness spatially, and through time. A radioisotope profile, sediment traps and repeated coring among multiple years were used to calibrate varve-years with calendar years. Measurements of varve thickness, and sub-annual laminae thickness, were collated among cores and spanned the period 1919 - 2013 AD. The resulting five-dimensional dataset (easting, northing, depth, varve/sub-laminae thickness, time) provides a unique opportunity to explore lacustrine sedimentation. Two clear trends emerge: a general down-lake trend in thickness among most years, which is punctuated by atypical years in which thicker varves appeared in only specific portions of the lake. In the latter case, thick varves appeared either (a) along the north (right-hand) side of the lake where inflow 'hugs' the shoreline, or (b) in the deepest, distal portion of the basin. In both cases, however, atypical varves of type (a) or (b) only punctuate the general down-lake trend in thickness that develops during most years. The clear implication is that sedimentation patterns, and rates, can (but do not always) differ between years and between points in Mud Lake: there is no 'single optimum' site for a core sample. To illustrate the potential consequences on hydroclimate proxy/inference, we show how the statistical relationships between hydroclimatic records and varve thickness vary spatially. Our hydroclimatic dataset includes homogenized local climatic data available from the Meteorological Service of Canada (MSC) since 1929 (temperature, precipitation, snow course), and discharge data from a river into which Mud Lake drains available from the Water Survey of Canada (WSC) since 1915. Our results show that varve records from different positions within the same lake reveal statistical relationships of markedly differing strength, and differing type, with the same hydroclimatic dataset. We conclude that (1) varve thickness is a key indicator in a hydroclimatic proxy context, but an adjunct consideration should include (2) how varve thickness varies spatially within the basin; varve thickness at a single site is an inconsistent indicator of basin-wide thickness in some years. Our findings do not complicate the use of varved sediments as hydroclimatic proxies, but highlight that a core network can yield potentially greater insight into a range of hydroclimatic processes in comparison with one, or few, core samples.

Prominent features in isotopic, chemical and dust stratigraphies from GV7, a drilling site in East Antarctica

NASA Astrophysics Data System (ADS)

Caiazzo, Laura

2016-04-01

In the framework of the new project "The IPICS 2k Array: a network of ice core climate and climate forcing records for the last two millennia", which represents a thematic research line of International Partnerships in Ice Core Sciences (IPICS), a 250 m deep ice core was retrieved (spanning roughly the last millennium) at GV7 site, together with several shallow firn cores and snow pits. The PNRA (Programma Nazionale di Ricerche in Antartide) project "IPICS-2kyr-It" represents the Italian contribution to IPICS "The 2k Array" and it is being accomplished in collaboration with KOPRI (Korean Polar Reasearch Institute). The availability of various records from the same site all spanning a temporal period ranging from the last decades to the last centuries will allow achieving a stacked record of chemical and isotopic markers and accumulation rate that is basic for a reliable climatic reconstruction. Previous surveys in the area of GV7 (70°41' S - 158°51' E, 1950 m a.s.l., East Antarctica) showed that this site is characterized by a relatively high snow accumulation (about 240 mm water eq./year), allowing a high resolution study of the climatic variability in the last millennium. Here we present the isotopic, chemical and dust stratigraphies of the snow pits sampled at GV7 during the 2013/14 field season and analysed in Italy and in Korea. Reversibly deposited components such as nitrate and methansulphonic acid (MSA) appear to be well preserved and show a clear seasonal profiles, as one can observe from the records achieved both by Italian and Korean labs. Such a feature, together with the high accumulation rate, allowed obtaining an accurate dating of the snow pits, based on the counting of annual layers. At this purpose, a multi-parametric approach was chosen by using MSA, non-sea-salt sulphate, and d18O as seasonal markers. The dating confirmed the value of the accumulation rate found during previous samplings.

Historical record and fluxes of DDTs at the Palos Verdes Shelf Superfund site, California.

PubMed

Liao, Chunyang; Taylor, Allison R; Kenney, William F; Schlenk, Daniel; Gan, Jay

2017-03-01

Marine sediments at many locations in the world are contaminated with a wide range of persistent organic pollutants. The Palos Verdes Shelf (PVS) is located in the ocean off the coast of Los Angeles, California and has been listed as a Superfund site by the US EPA since 1997, because of heavy contamination of DDTs and PCBs. However, little is known about the historical trend in the deposition of DDTs as a result of decades-long discharge of wastewater effluents. In this study, sediment cores were taken from the PVS site and determined for DDT and its metabolites including DDE and DDD (denoted as DDTs). Individual DDTs were found in the majority (95%) of the samples analyzed. The highest ∑DDT concentrations were found in three cores along the 60-meter isobath with geometric means of 31300, 7490, and 5010ng/gdw and medians of 82400, 17300, and 5200ng/g dw, respectively. Among DDT congeners, p,p'-DDE, o,p'-DDE and p,p'-DDD were predominant, contributing to approximately 54%, 27%, and 14% of the ΣDDTs in sediment. The vertical profiles of concentrations of contaminants in the sediment cores were examined. For most of the cores, a steady increase in the concentrations of DDTs during 1940s to 1980s was observed, while the concentrations declined gradually toward the surficial layers. On the basis of the mass flux of DDTs calculated and the area of the PVS Superfund site, we estimated the total deposition amount of DDTs in sediment and the deposition amount of ΣDDTs in this region during 1947-1971 was 132 tons, which was fairly close to what was reported in earlier studies for industrial wastewater discharge in the PVS site (870-1450tons). Our findings suggest that the elevated levels of DDTs in sediment from the PVS site are linked to the discharge of these contaminants between the 1940s-1980s. Copyright © 2016 Elsevier B.V. All rights reserved.

Contemporary prostate biopsy reporting: insights from a survey of clinicians' use of pathology data.

PubMed

Varma, Murali; Narahari, Krishna; Mason, Malcolm; Oxley, Jon D; Berney, Daniel M

2018-05-02

To determine how clinicians use data in contemporary prostate biopsy reports. A survey was circulated to members of the British Association of Urological Surgeons and the British Uro-oncology Group. Responses were received from 114 respondents (88 urologists, 26 oncologists). Ninety-seven (94%) use the number of positive cores from each side and 43 (42%) use the % number of positive cores. When determining the number and percentage of positive cores, 72 (71%) would not differentiate between targeted and non-targeted samples. If multiple Gleason Scores (GS) were included in a report, 77 (78%) would use the worst GS even if present in a core with very little tumour, 12% would use the global GS and 10% the GS in the core most involved by tumour. Fifty-five (55%) either never or rarely used perineural invasion for patient management. The number of positive cores is an important parameter for patient management but may be difficult to determine in the laboratory due to core fragmentation so the biopsy taker must indicate the number of biopsies obtained. Multiple biopsies taken from a single site are often interpreted by clinicians as separate cores when determining the number of positive cores so pathologists should also report the number of sites positive. Clinicians have a non-uniform approach to the interpretation of multiple GS in prostate biopsy reports so we recommend that pathologists also include a single 'bottom-line' GS for each case to direct the clinician's treatment decision. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

Core Research Center

USGS Publications Warehouse

Hicks, Joshua; Adrian, Betty

2009-01-01

The Core Research Center (CRC) of the U.S. Geological Survey (USGS), located at the Denver Federal Center in Lakewood, Colo., currently houses rock core from more than 8,500 boreholes representing about 1.7 million feet of rock core from 35 States and cuttings from 54,000 boreholes representing 238 million feet of drilling in 28 States. Although most of the boreholes are located in the Rocky Mountain region, the geologic and geographic diversity of samples have helped the CRC become one of the largest and most heavily used public core repositories in the United States. Many of the boreholes represented in the collection were drilled for energy and mineral exploration, and many of the cores and cuttings were donated to the CRC by private companies in these industries. Some cores and cuttings were collected by the USGS along with other government agencies. Approximately one-half of the cores are slabbed and photographed. More than 18,000 thin sections and a large volume of analytical data from the cores and cuttings are also accessible. A growing collection of digital images of the cores are also becoming available on the CRC Web site Internet http://geology.cr.usgs.gov/crc/.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sale, D.M.; Gibeaut, J.C.; Short, J.W.

Following the Exxon Valdez oil spill, sediment traps were deployed in nearshore subtidal areas of Prince William Sound, Alaska (PWS) to monitor particulate chemistry and mineralogy. Complemented by benthic sediment chemistry and core sample stratigraphy at the study sites, results were compared to historical trends and data from other Exxon Valdez studies. These results clearly indicate the transport of oil-laden sediments from oiled shorelines to adjacent subtidal sediments. The composition of hydrocarbons adsorbed to settling particulates at sites adjacent to oiled shorelines matched the PAH pattern of weathered Exxon Valdez crude oil.

Drilling the Thuringian Syncline, Germany: core processing during the INFLUINS scientific deep drilling campaign

NASA Astrophysics Data System (ADS)

Abratis, Michael; Methe, Pascal; Aehnelt, Michaela; Kunkel, Cindy; Beyer, Daniel; Kukowski, Nina; Totsche, Kai Uwe

2014-05-01

Deep drilling of the central Thuringian Syncline was carried out in order to gather substantial knowledge of subsurface fluid dynamics and fluid rock interaction within a sedimentary basin. The final depth of the borehole was successfully reached at 1179 m, just a few meters above the Buntsandstein - Zechstein boundary. One of the aspects of the scientific drilling was obtaining sample material from different stratigraphic units for insights in genesis, rock properties and fluid-rock interactions. Parts of the section were cored whereas cuttings provide record of the remaining units. Coring was conducted in aquifers and their surrounding aquitards, i.e. parts of the Upper Muschelkalk (Trochitenkalk), the Middle Muschelkalk, the Upper Buntsandstein (Pelitrot and Salinarrot) and the Middle Buntsandstein. In advance and in cooperation with the GFZ Potsdam team "Scientific Drilling" core handling was discussed and a workflow was developed to ensure efficient and appropriate processing of the valuable core material and related data. Core curation including cleaning, fitting, marking, measuring, cutting, boxing, photographing and unrolled scanning using a DMT core scanner was carried out on the drilling site in Erfurt. Due care was exercised on samples for microbiological analyses. These delicate samples were immediately cut when leaving the core tube and stored within a cooling box at -78°C. Special software for data input was used developed by smartcube GmbH. Advantages of this drilling information system (DIS) are the compatibility with formats of international drilling projects from the IODP and ICDP drilling programs and thus options for exchanges with the international data bases. In a following step, the drill cores were brought to the national core repository of the BGR in Berlin Spandau where the cores were logged for their physical rock properties using a GeoTek multi sensor core logger (MSCL). After splitting the cores into a working and archive half, the cores were scanned for compositional variations using an XRF core scanner at the BGR lab and scan images of the slabbed surfaces were performed. The average core recovery rate was very high at nearly 100%. Altogether, we gained 533 m of excellent core material including sandstones, siltstones and claystones, carbonates, sulfates and chlorides. This provides valuable insight into the stratigraphic column of the Thuringian Syncline.

JAMSTEC DARWIN Database Assimilates GANSEKI and COEDO

NASA Astrophysics Data System (ADS)

Tomiyama, T.; Toyoda, Y.; Horikawa, H.; Sasaki, T.; Fukuda, K.; Hase, H.; Saito, H.

2017-12-01

Introduction: Japan Agency for Marine-Earth Science and Technology (JAMSTEC) archives data and samples obtained by JAMSTEC research vessels and submersibles. As a common property of the human society, JAMSTEC archive is open for public users with scientific/educational purposes [1]. For publicizing its data and samples online, JAMSTEC is operating NUUNKUI data sites [2], a group of several databases for various data and sample types. For years, data and metadata of JAMSTEC rock samples, sediment core samples and cruise/dive observation were publicized through databases named GANSEKI, COEDO, and DARWIN, respectively. However, because they had different user interfaces and data structures, these services were somewhat confusing for unfamiliar users. Maintenance costs of multiple hardware and software were also problematic for performing sustainable services and continuous improvements. Database Integration: In 2017, GANSEKI, COEDO and DARWIN were integrated into DARWIN+ [3]. The update also included implementation of map-search function as a substitute of closed portal site. Major functions of previous systems were incorporated into the new system; users can perform the complex search, by thumbnail browsing, map area, keyword filtering, and metadata constraints. As for data handling, the new system is more flexible, allowing the entry of variety of additional data types. Data Management: After the DARWIN major update, JAMSTEC data & sample team has been dealing with minor issues of individual sample data/metadata which sometimes need manual modification to be transferred to the new system. Some new data sets, such as onboard sample photos and surface close-up photos of rock samples, are getting available online. Geochemical data of sediment core samples will supposedly be added in the near future. Reference: [1] http://www.jamstec.go.jp/e/database/data_policy.html [2] http://www.godac.jamstec.go.jp/jmedia/portal/e/ [3] http://www.godac.jamstec.go.jp/darwin/e/

Five Hundred and Seventy Three Holes in the Bottom of the Sea-Some Results From Seven Years of Deep-Sea Drilling

ERIC Educational Resources Information Center

Davies, T. A.

1976-01-01

Described are the background, operation, and findings of the work of the deep sea drilling vessel Glomar Challenger, which has taken 8,638 core samples from 573 holes at 392 sites on the floor of the Earth's oceans. (SL)

Dendrochronology of Utah Juniper (Juniperus osteosperma (Torr.) Little)

Treesearch

R. Justin Derose; Matthew F. Bekker; Roger Kjelgren; Brendan M. Buckley; James H. Speer; Eric B. Allen

2016-01-01

Utah juniper was a foundational species for the discipline of dendrochronology, having been used in the early 20th Century investigations of Mesa Verde, but has been largely ignored by dendrochronologists since. Here we present dendrochronological investigations of Utah juniper core and cross-sectional samples from four sites in northern Utah. We demonstrate that,...

Cores to the rescue: how old cores enable new science

NASA Astrophysics Data System (ADS)

Ito, E.; Noren, A. J.; Brady, K.

2016-12-01

The value of archiving scientific specimens and collections for the purpose of enabling further research using new analytical techniques, resolving conflicting results, or repurposing them for entirely new research, is often discussed in abstract terms. We all agree that samples with adequate metadata ought to be archived systematically for easy access, for a long time and stored under optimal conditions. And yet, as storage space fills, there is a temptation to cull the collection, or when a researcher retires, to discard the collection unless the researcher manages to make his or her own arrangement for the collection to be accessioned elsewhere. Nobody has done anything with these samples in over 20 years! Who would want them? It turns out that plenty of us do want them, if we know how to find them and if they have sufficient metadata to assess past work and suitability for new analyses. The LacCore collection holds over 33 km of core from >6700 sites in diverse geographic locations worldwide with samples collected as early as 1950s. From these materials, there are many examples to illustrate the scientific value of archiving geologic samples. One example that benefitted Ito personally were cores from Lakes Mirabad and Zeribar, Iran, acquired in 1963 by Herb Wright and his associates. Several doctoral and postdoctoral students generated and published paleoecological reconstructions based on cladocerans, diatoms, pollen or plant macrofossils, mostly between 1963 and 1967. The cores were resampled in 1990s by a student being jointly advised by Wright and Ito for oxygen isotope analysis of endogenic calcite. The results were profitably compared with pollen and the results published in 2001 and 2006. From 1979 until very recently, visiting Iran for fieldwork was not pallowed for US scientists. Other examples will be given to further illustrate the power of archived samples to advance science.

Tracing of ca 800 yr old mining activity in peat bog using Pb elemental concentrations and isotope compositions.

NASA Astrophysics Data System (ADS)

Baron, S.; Carignan, J.; Ploquin, A.

2003-04-01

Sixty sites of slags have been documented on the Mont-Lozère in southern France. The petrographic analysis shows that slags are metallurgical wastes (800 to 850 yr BP) which certainly result from smelting activity for lead and silver extraction (Ploquin et al., 2001). The aims of this study are: 1) to trace the source of Pb ores which supplied the smelting sites, by using the Pb isotopic composition of several surrounding Pb deposits, 2) to evaluate the actual pollution caused by these slags, by using elemental and isotopic compositions of soils, water and vegetation, and 3) to document the pollution history of the region, by using elemental and isotopic compositions of peat bog cores collected in the neighbourhood of the historical smelting sites. The lead isotopic composition of galena collected in most surrounding ores is very similar to that of different slag samples. On the other hand, the high precision of the results allowed us to select the mineralised areas which were probably the ore sources. The Pb isotopic composition of slags is even more homogeneous: 208/206 Pb: 2.092±0.002; 206/207 Pb: 1.179±0.001; 208/204 Pb: 38.663±0.025; 207/204 Pb: 15.665±0.006; 206/204 Pb: 18.476±0.023, and will allow source tracing in the environment. The "Narses Mortes" peat bog, around which two smelting sites have been reported, is strongly minerotrophic and contains 8 to 60% ash. A 1.40 m core have been retrieved and divided into 58 individual samples. Minerotrophic peat bog records both atmospheric deposition, soils leaching and the grounwater influence. The measured metal concentrations are normalised to Al contents of peat bog samples and the metal/Al ratios are compared to that of the Mont-Lozère granite: relative excess in metal concentrations are found in peat bog samples. An increasing excess of most metals (Pb, Zn, Cd...) was measured for surface samples, from 55 cm depth to the top of the core (23 cm depth). This profil might be attributed to atmospheric input during the last centuries. Pb and As alone are also enriched in some deeper samples (between 120--90 cm depth). At the moment, no sedimentation rates are available for this section of the peat bog. However, according to palynological data (de Beaulieu, in progress), the bottom of the core might be as old as 5000 years BP. This would place the medieval activities at the base of the surface metal enrichment (˜55 cm depth), having no large effect in Pb concentrations measured in peat bog. The older Pb-As enrichment remain enigmatic and may correspond to earlier anthropogenic activities (2000--2500 BP), a period for which very few traces of metallurgical activities are found in Occidental Europe. 14C dating and Pb isotope works are going on peat bog samples trying to discriminate metals sources.

Do chemical gradients within soil aggregates reflect plant/soil interactions?

NASA Astrophysics Data System (ADS)

Krüger, Jaane; Hallas, Till; Kinsch, Lena; Stahr, Simon; Prietzel, Jörg; Lang, Friederike

2016-04-01

As roots and hyphae often accumulate at the surface of soil aggregates, their formation and turnover might be related to the bioavailability especially of immobile nutrients like phosphorus. Several methods have been developed to obtain specific samples from aggregate surfaces and aggregate cores and thus to investigate differences between aggregate shell and core. However, these methods are often complex and time-consuming; therefore most common methods of soil analysis neglect the distribution of nutrients within aggregates and yield bulk soil concentrations. We developed a new sequential aggregate peeling method to analyze the distribution of different nutrients within soil aggregates (4-20 mm) from four forest sites (Germany) differing in concentrations of easily available mineral P. Aggregates from three soil depths (Ah, BwAh, Bw) were isolated, air-dried, and peeled with a sieving machine performing four sieving levels with increasing sieving intensity. This procedure was repeated in quadruplicate, and fractions of the same sample and sieving level were pooled. Carbon and N concentration, citric acid-extractable PO4 and P, as well as total element concentrations (P, K, Mg, Ca, Al, Fe) were analyzed. Additionally, synchrotron-based P K-edge XANES spectroscopy was applied on selected samples to detect P speciation changes within the aggregates. The results reveal for most samples a significantly higher C and N concentration at the surface compared to the interior of the aggregates. Carbon and N gradients get more pronounced with increasing soil depth and decreasing P status of study sites. This might be explained by lower aggregate turnover rates of subsoil horizons and intense bioturbation on P-rich sites. This assumption is also confirmed by concentrations of citric acid-extractable PO4 and P: gradients within aggregates are getting more pronounced with increasing soil depth and decreasing P status. However, the direction of these gradients is site-specific: On P-rich study sites the results reveal a significant depletion of citric acid-extractable PO4 and P on aggregate surfaces in subsoil horizons, while at the other study sites a slight enrichment at the aggregate surfaces could be observed. Total P concentrations show no distinct gradients within topsoil aggregates, but a slight P enrichment at the surface of subsoil aggregates at the P-rich site. A strong correlation with the total Al concentrations may indicate a P speciation change within aggregates (e.g., due to acidification processes). These results were also confirmed by P K-edge XANES spectra of aggregate core and shell samples of the P-rich site: In the aggregate shells of topsoil as well as subsoil aggregates, organic P forms are most dominant (82 and 80 %, respectively) than in the aggregate interior (54 and 66%, respectively). Moreover, P in the shell seems to be completely associated to Al, whereas some of the P in the aggregate interior is bound to Fe and/or Ca. Overall, our results show that plant/soil interactions impact on small-scale distribution and bioavailability of nutrients by root uptake and root-induced aggregate engineering.

Structure and builtup of the Middle Bengal Fan at 8°N from multichannel seismic surveys and the IODP Expedition 354 drilling transect

NASA Astrophysics Data System (ADS)

Spiess, V.; Bergmann, F.; Schwenk, T.; Lantzsch, H.; Bahk, J. J.; Weber, M. E.; France-Lanord, C.; Klaus, A.

2016-12-01

IODP Expedition 354 to the Bengal Fan drilled a 320 km long e-W transect at 8°N with 7 drill sites, fully covering the uppermost 150-200 meters of fan deposits at distances of 50 km, originating from Himalayan mountain ranges and the Ganges-Brahmaputra river system. A major goal of this transect approach was to ensure a continuous record of turbiditic material delivered over the last appx. 1 million year, considering frequent longitudinal depocenter shifts of the active channel. By extensively utilizing the new half-APC coring technique, high quality and high recovery cores could be retrieved representing a wide range of grain sizes from hemipelagic deposits through clay rich turbidites to coarse silt and sandy units. Up to medium sand grain sizes were retrieved within the basal units of levees, which correspond to high-reflectivity units in high-resolution multichannel seismic profiles. Finely laminated sections with mm to cm-thick turbidites represents levee formations. At Site U1453 for example, core logging and downhole logging data confirm the representative sampling based on a very good match of several physical property data sets. An expanded section was cored at Site U1454, where the presumably currently active channel has built a levee, which likely represents major sediment supply within the last 30 kyr. A spatial grid of seismic and echosounder data in the vicinity of the active channel reveals a high spatial variability in sedimentation rates and distinct depocenter shifts in response to changes in channel geometry. Site U1452 has provided a full record a levee growth including interlevee sedimentation, sandy basal units characterized by a lobe formation, and a pronounced fining upward trend following the phase of channel erosion and levee builtup. From all sites, detailed comparisons of physical and sedimentological shipboard results with seismic data will be presented. Expedition 354 has provided a unique sample and data set to better understand fan deposition and channel-levee growth including silt and sand grain sizes. It will also provide valuable constraints on the volume, nature and composition of suspension flows contributing to fan growth in the Middle Bengal Fan.

Spatial and Temporal Variations in Diatoms from la Chaine des Lacs Urban Watershed, Nord-Pas France, in Relation to Water Quality

NASA Astrophysics Data System (ADS)

Noble, P. J.; Van de Vijver, B.; Verleyen, E.; Prygiel, J.; Ivanovsky, A.; Lesven, L.; Billon, G.

2016-12-01

Diatom analysis was conducted on lake sediments in la Chaîne des Lacs (CDL), a shallow eutrophic urban park and storm control system in Villeneuve d'Ascq, France, to address both the present day water quality, and the evolution of this urban system over its 40 year history. The main lake, Lac du Héron (LDH), received recent attention because of water quality problems, including eutrophication, harmful algal blooms, and invasion by the macrophyte Elodea in 2012. A total of 17 sites were collected in CDL, 11 of which were in LDH, to document spatial variability, and a 26cm long core addresses historical changes. The bulk of the diatom assemblage in LDH can be classified as both eutrophic and moderately metal tolerant, using modern national diatom indices developed and used by the French regional water agencies. Surface sediment samples within LDH show large spatial variations in %Cocconeis placentula whose habitat is epiphytic growth on Elodea. Other variation is reflected in the phytoplankton composition both spatially, and interannually. Aulacoseira muzzanensis and Cyclostephanos dubius showed greater abundance in the open water habitats in LDH, whereas sites in CDL outside of LDH had greater Cyclotella meneghiniana. Temporally, Stephanodicsus (largely S. hantzschii), the dominant diatom in early spring, were present in greater abundances in the 2016 surface sediment samples than in any of the 2015 samples. One possible explanation is that the 2016 samples, taken March 30th, preferentially preserved the early spring Stephanodiscus bloom, in contrast to the 2015 samples, which were taken in January. The sediment core provides an historical record, where the uppermost 4cm plot with the bulk of the LDH surface samples and contain abundant Cocconeis, 4 -14cm is phytoplankton-rich, largely Cyclostephanos dubius and Aulacoseira muzzanensis, and represents a less weed-choked environment prior to the 2012 Elodea invasion. The base of the core is dominated by Amphora and Rhoicosphenia abbreviata, is most similar to an outlier site on the Marque River, and represents early conditions after the reservoir was established. Continued work will focus on relating these results to urban development, improvements of the sewage system, and meteorological patterns.

Biozone Characterization of Foraminifera in Upper Pleistocene through Recent Shelf and Slope Sediments, Northern Gulf of Alaska: Integration of SHE-diversity and Polytopic Vector Analyses

NASA Astrophysics Data System (ADS)

Zellers, S.; Cowan, E. A.; Davies, M. H.

2014-12-01

Gulf of Alaska sediments contain distinct, low-diversity assemblages of benthic and planktic foraminifera, whose distribution is a function of food availability, water mass properties, ice proximity, transport/deposition, predation, and taphonomic processes. Spatial and temporal changes in diversity reflect these processes and provide insight into this margin's history. Two quantitative techniques are integrated to define and characterize benthic foraminferal biozones in Gulf of Alaska sediment core samples collected by the R/V Maurice Ewing in 2004 at shelf site EW0408-79JC (59.53° N, 141.76° W, 158 m depth), and slope site EW0408-85JC (59.56° N, 144.15° W, 682 m depth). Sediments date from the end of the most recent glaciation (diamict in 85JC) to the present (bioturbated, silty clay at both sites). We apply SHE analysis, a graphical, iterative technique, based on diversity trends in a plot of ln E vs. ln N, where E is species evenness and N is cumulative number of specimens. In each step, the plot is examined for the first change in slope between successive samples, representing a change in diversity. At this point a boundary is defined, samples before the break are removed, and the analysis is repeated until all samples are analyzed. Data are further analyzed using an unmixing algorithm known as polytopic vector analyses. This technique defines a small number of orthogonal end members that explain a majority of the variance, thus reducing data complexity and aiding interpretation. SHE-analysis of benthic foraminiferal data defines eighteen informal abundance biozones. Polytopic vector analyses indicate that the faunal assemblages reflect mixtures of up to seven distinct biofacies: outer neritic (2), upper bathyal (2), reduced oxygen (2), and inner neritic. Rapid changes in faunal diversity correspond with increased sedimentation rates, especially during the end of the most recent glaciation (17 to 16 ka). The same relationship occurs over the last 1000 years at the shelf site. Where the cores overlap in age, many more assemblage boundaries occur in the shelf core, suggesting a comparatively dynamic environment relative to the slope. The least amount of diversity change corresponds with the laminated intervals in 85JC, coincident with high productivity and development of anoxia during regional deglaciation.

The effect of acidified sample storage time on the determination of trace element concentration in ice cores by ICP-SFMS

NASA Astrophysics Data System (ADS)

Uglietti, C.; Gabrielli, P.; Lutton, A.; Olesik, J.; Thompson, L. G.

2012-12-01

Trace elements in micro-particles entrapped in ice cores are a valuable proxy of past climate and environmental variations. Inductively coupled plasma sector field mass spectrometry (ICP-SFMS) is generally recognized as a sensitive and accurate technique for the quantification of ultra-trace element concentrations in ice cores. Usually, ICP-SFMS analyses of ice core samples are performed by melting and acidifying aliquots. Acidification is important to transfer trace elements from particles into solution by partial and/or complete dissolution. Only elements in solution and in sufficiently small particles will be vaporized and converted to elemental ions in the plasma for detection by ICP-SFMS. However, experimental results indicate that differences in acidified sample storage time at room temperature may lead to the recovery of different trace element fractions. Moreover, different lithologies of the relatively abundant crustal material entrapped in the ice matrix could also influence the fraction of trace elements that are converted into elemental ions in the plasma. These factors might affect the determination of trace elements concentrations in ice core samples and hamper the comparison of results obtained from ice cores from different locations and/or epochs. In order to monitor the transfer of elements from particles into solution in acidified melted ice core samples during storage, a test was performed on sections from nine ice cores retrieved from low latitude drilling sites around the world. When compared to ice cores from polar regions, these samples are characterized by a relative high content of micro-particles that may leach trace elements into solution differently. Of the nine ice cores, five are from the Tibetan Plateau (Dasuopu, Guliya, Naimonanyi, Puruogangri and Dunde), two from the Andes (Quelccaya and Huascaran), one from Africa (Kilimanjaro) and one from the Eastern Alps (Ortles). These samples were decontaminated by triple rinsing, melted and stored in pre-cleaned low-density polyethylene bottles, and kept frozen until acidification (2% v/v ultra-pure HNO3). Determination of twenty trace elements (Ag, Al, As, Bi, Cd, Co, Cr, Cu, Fe, Mn, Mo, Pb, Rb, Sb, Sn, Ti, Tl, U, V, and Zn) was repeated at different times after acidification using the same aliquot. Analyses show a mean increase of 40-50% in trace element concentration in all the samples during the first 15 days of storage after acidification, except Al, Fe, V and Cr, which show a larger increase (90-100%). After 15 days the trace element concentrations reach generally stable values (with small increases within measurement uncertainty), except for the Naimonanyi and Kilimanjaro samples which continue to increase. In contrast, Ag concentration decreases after one week, likely due to its low stability in the acidified solution that may depend on the Cl- concentration. We froze the samples 43 days after the acidification. After two weeks the samples were melted and re-analyzed by ICP-SFMS in two different laboratories as an inter-calibration exercise. The results show a good correspondence between the measured concentrations determined by the two instruments and a consistent additional increase of 20-30% of measured trace element concentrations in almost all samples.

Initial geochemistry data of the Lake Ohrid (Macedonia, Albania) "DEEP" site sediment record: The ICDP SCOPSCO drilling project

NASA Astrophysics Data System (ADS)

Francke, Alexander; Wagner, Bernd; Krastel, Sebastian; Lindhorst, Katja; Mantke, Nicole; Klinghardt, Dorothea

2014-05-01

Lake Ohrid, located at the border of Macedonia and Albania is about 30 km long, 15 km wide and up to 290 m deep. Formed within a tectonic graben, Lake Ohrid is considered to be the oldest lake in Europe. The ICDP SCOPSCO (Scientific Collaboration of Past Speciation Conditions in Lake Ohrid) deep drilling campaign at Lake Ohrid in spring 2013 aimed (a) to obtain more precise information about the age and origin of the lake, (b) to unravel the seismotectonic history of the lake area including effects of major earthquakes and associated mass wasting events, (c) to obtain a continuous record containing information on volcanic activities and climate changes in the central northern Mediterranean region, and (d) to better understand the impact of major geological/environmental events on general evolutionary patterns and shaping an extraordinary degree of endemic biodiversity as a matter of global significance. Drilling was carried out by DOSECC (Salt Lake City, USA) using the DLDS (Deep Lake Drilling System) with a hydraulic piston corer for surface sediments and rotation drilling for harder, deeper sediments. Overall, about 2,100 m of sediment were recovered from 4 drill sites. At the "DEEP" site in the center of the lake, seismic data indicated a maximum sediment fill of ca. 700 m, of which the uppermost 568 m sediment were recovered. Initial data from core catcher samples and on-site susceptibility measurements indicate that the sediment sequence covers more than 1.2 million years and provides a continuous archive of environmental and climatological variability in the area. Currently, core opening, core description, XRF and MSCL -scanning, core correlation, and sub-sampling of the sediment cores from the "DEEP" site is conducted at the University of Cologne. High-resolution geochemical data obtained from XRF-scanning imply that the sediments from the "DEEP" site are highly sensitive to climate and environmental variations in the Balkan area over the last few glacial-interglacial cycles. Interglacial periods are characterized by high Ca counts, likely associated with a high content of calcite in the sediments. Previous studies have shown that the calcite contents in sediments from Lake Ohrid are predominantly triggered by precipitation of endogenic calcite resulting from enhanced photosynthesis and higher temperatures. Moreover, high Ca counts mostly correspond to low K counts indicating reduced clastic input and a denser vegetation cover in the catchment. In contrast, high K and low Ca counts characterize glacial periods, indicating reduced precipitation of endognic calcite and enhanced deposition of clastic material. The variations in Ca and K counts mainly represent climatic variations on a glacial-interglacial timescale. Inorganic geochemistry data shall also be used to improve the age control of the "DEEP" site sequence. First findings of macroscopic tephra horizons allow a preliminary age control on the sediment succession, and peaks in K, Sr, Zr, and magnetic susceptibility might indicate the occurrence of cryptotephralayers in the sediment sequence.

Characterization of C1-Metabolizing Prokaryotic Communities in Methane Seep Habitats at the Kuroshima Knoll, Southern Ryukyu Arc, by Analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA Genes

PubMed Central

Inagaki, Fumio; Tsunogai, Urumu; Suzuki, Masae; Kosaka, Ayako; Machiyama, Hideaki; Takai, Ken; Nunoura, Takuro; Nealson, Kenneth H.; Horikoshi, Koki

2004-01-01

Samples from three submerged sites (MC, a core obtained in the methane seep area; MR, a reference core obtained at a distance from the methane seep; and HC, a gas-bubbling carbonate sample) at the Kuroshima Knoll in the southern Ryuku arc were analyzed to gain insight into the organisms present and the processes involved in this oxic-anoxic methane seep environment. 16S rRNA gene analyses by quantitative real-time PCR and clone library sequencing revealed that the MC core sediments contained abundant archaea (∼34% of the total prokaryotes), including both mesophilic methanogens related to the genus Methanolobus and ANME-2 members of the Methanosarcinales, as well as members of the δ-Proteobacteria, suggesting that both anaerobic methane oxidation and methanogenesis occurred at this site. In addition, several functional genes connected with methane metabolism were analyzed by quantitative competitive-PCR, including the genes encoding particulate methane monooxygenase (pmoA), soluble methane monooxygenase (mmoX), methanol dehydrogenese (mxaF), and methyl coenzyme M reductase (mcrA). In the MC core sediments, the most abundant gene was mcrA (2.5 × 106 copies/g [wet weight]), while the pmoA gene of the type I methanotrophs (5.9 × 106 copies/g [wet weight]) was most abundant at the surface of the MC core. These results indicate that there is a very complex environment in which methane production, anaerobic methane oxidation, and aerobic methane oxidation all occur in close proximity. The HC carbonate site was rich in γ-Proteobacteria and had a high copy number of mxaF (7.1 × 106 copies/g [wet weight]) and a much lower copy number of the pmoA gene (3.2 × 102 copies/g [wet weight]). The mmoX gene was never detected. In contrast, the reference core contained familiar sequences of marine sedimentary archaeal and bacterial groups but not groups specific to C1 metabolism. Geochemical characterization of the amounts and isotopic composition of pore water methane and sulfate strongly supported the notion that in this zone both aerobic methane oxidation and anaerobic methane oxidation, as well as methanogenesis, occur. PMID:15574947

Physical properties of the Nankai inner accretionary prism at Site C0002, IODP Expedition 348

NASA Astrophysics Data System (ADS)

Kitamura, Manami; Kitajima, Hiroko; Henry, Pierre; Valdez, Robert; Josh, Matthew

2014-05-01

Integrated Ocean Drilling Program (IODP) Nankai Trough Seismogenic Zone Experiment (NanTroSEIZE) Expedition 348 focused on deepening the existing riser hole at Site C0002 to ~3000 meters below seafloor (mbsf) to access the deep interior of the Miocene inner accretionary prism. This unique tectonic environment, which has never before been sampled in situ by ocean drilling, was characterized through riser drilling, logging while drilling (LWD), mud gas monitoring and sampling, and cuttings and core analysis. Shipboard physical properties measurements including moisture and density (MAD), electrical conductivity, P-wave, natural gamma ray, and magnetic susceptibility measurements were performed mainly on cuttings samples from 870.5 to 3058.5 mbsf, but also on core samples from 2163 and 2204 mbsf. MAD measurements were conducted on seawater-washed cuttings ("bulk cuttings") in two size fractions of >4 mm and 1-4 mm from 870.5 to 3058.5 mbsf, and hand-picked intact cuttings from the >4 mm size fractions within 1222.5-3058.5 mbsf interval. The bulk cuttings show grain density of 2.68 g/cm3 and 2.72 g/cm3, bulk density of 1.9 g/cm3 to 2.2 g/cm3, and porosity of 50% to 32%. Compared to the values on bulk cuttings, the intact cuttings show almost the same grain density (2.66-2.70 g/cm3), but higher bulk density (2.05-2.41 g/cm3) and lower porosity (37-18%), respectively. The grain density agreement suggests that the measurements on both bulk cuttings and intact cuttings are of good quality, and the differences in porosity and density are real, but the values from the bulk cuttings are affected strongly by artifacts of the drilling process. Thus, the bulk density and porosity data on handpicked cuttings are better representative of formation properties. Combined with the MAD measurements on hand-picked intact cuttings and discrete core samples from previous expeditions, porosity generally decreases from ~60% to ~20% from the seafloor to 3000 mbsf at Site C0002. Electrical conductivity and P-wave velocity on discrete samples, which were prepared from both cuttings and core samples in the depth interval of 1745.5-3058.5 mbsf, range 0.15-0.9 S/m and 1.7-4.5 km/s, respectively. The electrical resistivity (a reciprocal of conductivity) on discrete samples is generally higher than the LWD resistivity data but the overall depth trends are similar. On the other hand, the P-wave velocity on discrete samples is lower than the LWD P-wave velocity between 2200 mbsf and 2600 mbsf, while the P-wave velocity on discrete samples and LWD P-wave velocity are in a closer agreement below 2600 mbsf. The electrical conductivity and P-wave velocity on discrete samples corrected for in-situ pressure and temperature will be presented. The shipboard physical properties measurements on cuttings are very limited but can be useful with careful treatment and observation.

Impact of extended prostate biopsy including apical anterior region for cancer detection and prediction of surgical margin status for radical prostatectomy.

PubMed

Hashimoto, Kohei; Shinkai, Nobuo; Tanaka, Toshiaki; Masumori, Naoya

2017-06-01

We investigated diagnostic yield of initial biopsy and repeated biopsy including apical cores. We investigated 573 consecutive men with PSA of ≤20 ng/ml who underwent prostate biopsy between 2004 and 2013. The initial 14-core biopsy consisted of the sextant type, lateral sites at the base and middle, lateral apices (la) at anterior horn sites, and apical anterior sites (aa). The repeated 18-core biopsy consisted of the initial 14-core biopsy with four transition zone (TZ) sites at the base (tzb) and middle (tzm). Prostate cancer was diagnosed in 178 (38.9%) of 458 men with the initial 14-core biopsy, and 44 (38.3%) of 115 men with the repeated 18-core biopsy. In the initial biopsy setting, the unique cancer detection rate was high in apical sites (apex, la, and aa: 6.2%, 6.2% and 5.1%, respectively). In the repeated setting, it was high in the TZ site in addition to the apical site (apex, la, aa, tzm, and tzb: 6.8%, 6.8%, 11.4%, 9.1% and 11.4%, respectively). The positive SM rate at the apex was higher in patients whose cancer was detected only in sites other than the sextant region than for those in the sextant region (36.4% vs. 14.8%, P = 0.037). The initial 14-core and the repeated 18-core biopsy scheme including apical anterior cores are feasible for prostate cancer detection. We propose that apical biopsy cores can be used to predict not only the existence of cancer but also surgical margin status at the apex. © The Author 2017. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Major and trace elements in Mahogany zone oil shale in two cores from the Green River Formation, piceance basin, Colorado

USGS Publications Warehouse

Tuttle, M.L.; Dean, W.E.; Parduhn, N.L.

1983-01-01

The Parachute Creek Member of the lacustrine Green River Formation contains thick sequences of rich oil-shale. The richest sequence and the richest oil-shale bed occurring in the member are called the Mahogany zone and the Mahogany bed, respectively, and were deposited in ancient Lake Uinta. The name "Mahogany" is derived from the red-brown color imparted to the rock by its rich-kerogen content. Geochemical abundance and distribution of eight major and 18 trace elements were determined in the Mahogany zone sampled from two cores, U. S. Geological Survey core hole CR-2 and U. S. Bureau of Mines core hole O1-A (Figure 1). The oil shale from core hole CR-2 was deposited nearer the margin of Lake Uinta than oil shale from core hole O1-A. The major- and trace-element chemistry of the Mahogany zone from each of these two cores is compared using elemental abundances and Q-mode factor modeling. The results of chemical analyses of 44 CR-2 Mahogany samples and 76 O1-A Mahogany samples are summarized in Figure 2. The average geochemical abundances for shale (1) and black shale (2) are also plotted on Figure 2 for comparison. The elemental abundances in the samples from the two cores are similar for the majority of elements. Differences at the 95% probability level are higher concentrations of Ca, Cu, La, Ni, Sc and Zr in the samples from core hole CR-2 compared to samples from core hole O1-A and higher concentrations of As and Sr in samples from core hole O1-A compared to samples from core hole CR-2. These differences presumably reflect slight differences in depositional conditions or source material at the two sites. The Mahogany oil shale from the two cores has lower concentrations of most trace metals and higher concentrations of carbonate-related elements (Ca, Mg, Sr and Na) compared to the average shale and black shale. During deposition of the Mahogany oil shale, large quantities of carbonates were precipitated resulting in the enrichment of carbonate-related elements and dilution of most trace elements as pointed out in several previous studies. Q-mode factor modeling is a statistical method used to group samples on the basis of compositional similarities. Factor end-member samples are chosen by the model. All other sample compositions are represented by varying proportions of the factor end-members and grouped as to their highest proportion. The compositional similarities defined by the Q-mode model are helpful in understanding processes controlling multi-element distributions. The models for each core are essentially identical. A four-factor model explains 70% of the variance in the CR-2 data and 64% of the O1-A data (the average correlation coefficients are 0. 84 and 0. 80, respectively). Increasing the number of factors above 4 results in the addition of unique instead of common factors. Table I groups the elements based on high factor-loading scores (the amount of influence each element has in defining the model factors). Similar elemental associations are found in both cores. Elemental abundances are plotted as a function of core depth using a five-point weighted moving average of the original data to smooth the curve (Figure 3 and 4). The plots are grouped according to the four factors defined by the Q-mode models and show similar distributions for elements within the same factor. Factor 1 samples are rich in most trace metals. High oil yield and the presence of illite characterize the end-member samples for this factor (3, 4) suggesting that adsorption of metals onto clay particles or organic matter is controlling the distribution of the metals. Precipitation of some metals as sulfides is possible (5). Factor 2 samples are high in elements commonly associated with minerals of detrital or volcanogenic origin. Altered tuff beds and lenses are prevalent within the Mahogany zone. The CR-2 end-member samples for this factor contain analcime (3) which is an alteration product within the tuff beds of the Green River Formation. Th

Summary of water- and sediment-quality data for Anacostia River well sites sampled in July-August 2002

USGS Publications Warehouse

Miller, Cherie V.; Klohe, Cheryl A.

2003-01-01

This data report is a summary of chemical analyses conducted by the U.S. Geological Survey on ground water and sediment in the tidal Anacostia River watershed, Washington, D.C. during July-August 2002. Cores were drilled and wells were established at three shoreline sites: two wells at the New York Avenue overpass, two wells at the Kenilworth Aquatic Gardens, and one well at Anacostia Park. Additionally, two cores were collected by hoverprobe in mudflats on the river: one by Benning Road and one in the mouth of Beaverdam Creek. Chemical analyses included volatile organic compounds, semi-volatile organic compounds or polyaromatic hydrocarbons, organochlorine pesticides, aroclors and total polychlorinated biphenyls, metals, nutrients, biochemical and chemical oxygen demands, total phenols, total cyanide, oil and grease, and total suspended and dissolved solids in aqueous phases.

Estimating the spatial distribution of soil organic matter density and geochemical properties in a polygonal shaped Arctic Tundra using core sample analysis and X-ray computed tomography

NASA Astrophysics Data System (ADS)

Soom, F.; Ulrich, C.; Dafflon, B.; Wu, Y.; Kneafsey, T. J.; López, R. D.; Peterson, J.; Hubbard, S. S.

2016-12-01

The Arctic tundra with its permafrost dominated soils is one of the regions most affected by global climate change, and in turn, can also influence the changing climate through biogeochemical processes, including greenhouse gas release or storage. Characterization of shallow permafrost distribution and characteristics are required for predicting ecosystem feedbacks to a changing climate over decadal to century timescales, because they can drive active layer deepening and land surface deformation, which in turn can significantly affect hydrological and biogeochemical responses, including greenhouse gas dynamics. In this study, part of the Next-Generation Ecosystem Experiment (NGEE-Arctic), we use X-ray computed tomography (CT) to estimate wet bulk density of cores extracted from a field site near Barrow AK, which extend 2-3m through the active layer into the permafrost. We use multi-dimensional relationships inferred from destructive core sample analysis to infer organic matter density, dry bulk density and ice content, along with some geochemical properties from nondestructive CT-scans along the entire length of the cores, which was not obtained by the spatially limited destructive laboratory analysis. Multi-parameter cross-correlations showed good agreement between soil properties estimated from CT scans versus properties obtained through destructive sampling. Soil properties estimated from cores located in different types of polygons provide valuable information about the vertical distribution of soil and permafrost properties as a function of geomorphology.

The promoting effect of CeO2@Ce-O-P multi-core@shell structure on SO2 tolerance for selective catalytic reduction of NO with NH3 at low temperature

NASA Astrophysics Data System (ADS)

Yao, Weiyuan; Liu, Yue; Wu, Zhongbiao

2018-06-01

A series of CeO2@Ce-O-P "multi-core@shell" catalysts were synthesized in this paper for selective catalytic reduction (SCR) of NO with NH3. The experimental results had showed that CeO2@Ce-O-P-30:3 yielded best SO2 tolerance of an over 70% deNOx efficiency at 250 °C in the presence of 100 ppm SO2 for 20 h, which was much higher compared to pure Ce-O-P and CeO2 samples. Further characterization results indicated that Ce-O-P coating layer could somewhat inhibit sulfur depositing on the catalysts during SCR reaction in the presence of SO2, thereby protecting the active sites from SO2 poisoning. Especially, O2-TPD results illustrated that a great amount of active oxygen species were retained on used CeO2@Ce-O-P catalyst after a long term reaction. The synergetic effect of "multi-core@shell" structure could be attributed to such enhanced performances. The "core" CeO2 devoted abundant active oxygen sites to fulfill the SCR reaction. And the "shell" Ce-O-P could not only provide acid sites, but also protect the active oxygen species by avoiding the over-adsorption of SO2 on the catalyst. This work could provide a new way to increase the sulfur resistance for low temperature SCR catalysts.

Impact of bottom trawling on deep-sea sediment properties along the flanks of a submarine canyon.

PubMed

Martín, Jacobo; Puig, Pere; Masqué, Pere; Palanques, Albert; Sánchez-Gómez, Anabel

2014-01-01

The offshore displacement of commercial bottom trawling has raised concerns about the impact of this destructive fishing practice on the deep seafloor, which is in general characterized by lower resilience than shallow water regions. This study focuses on the flanks of La Fonera (or Palamós) submarine canyon in the Northwestern Mediterranean, where an intensive bottom trawl fishery has been active during several decades in the 400-800 m depth range. To explore the degree of alteration of surface sediments (0-50 cm depth) caused by this industrial activity, fishing grounds and control (untrawled) sites were sampled along the canyon flanks with an interface multicorer. Sediment cores were analyzed to obtain vertical profiles of sediment grain-size, dry bulk density, organic carbon content and concentration of the radionuclide 210Pb. At control sites, surface sediments presented sedimentological characteristics typical of slope depositional systems, including a topmost unit of unconsolidated and bioturbated material overlying sediments progressively compacted with depth, with consistently high 210Pb inventories and exponential decaying profiles of 210Pb concentrations. Sediment accumulation rates at these untrawled sites ranged from 0.3 to 1.0 cm y-1. Sediment properties at most trawled sites departed from control sites and the sampled cores were characterized by denser sediments with lower 210Pb surface concentrations and inventories that indicate widespread erosion of recent sediments caused by trawling gears. Other alterations of the physical sediment properties, including thorough mixing or grain-size sorting, as well as organic carbon impoverishment, were also visible at trawled sites. This work contributes to the growing realization of the capacity of bottom trawling to alter the physical properties of surface sediments and affect the seafloor integrity over large spatial scales of the deep-sea.

Impact of Bottom Trawling on Deep-Sea Sediment Properties along the Flanks of a Submarine Canyon

PubMed Central

Martín, Jacobo; Puig, Pere; Masqué, Pere; Palanques, Albert; Sánchez-Gómez, Anabel

2014-01-01

The offshore displacement of commercial bottom trawling has raised concerns about the impact of this destructive fishing practice on the deep seafloor, which is in general characterized by lower resilience than shallow water regions. This study focuses on the flanks of La Fonera (or Palamós) submarine canyon in the Northwestern Mediterranean, where an intensive bottom trawl fishery has been active during several decades in the 400–800 m depth range. To explore the degree of alteration of surface sediments (0–50 cm depth) caused by this industrial activity, fishing grounds and control (untrawled) sites were sampled along the canyon flanks with an interface multicorer. Sediment cores were analyzed to obtain vertical profiles of sediment grain-size, dry bulk density, organic carbon content and concentration of the radionuclide 210Pb. At control sites, surface sediments presented sedimentological characteristics typical of slope depositional systems, including a topmost unit of unconsolidated and bioturbated material overlying sediments progressively compacted with depth, with consistently high 210Pb inventories and exponential decaying profiles of 210Pb concentrations. Sediment accumulation rates at these untrawled sites ranged from 0.3 to 1.0 cm y−1. Sediment properties at most trawled sites departed from control sites and the sampled cores were characterized by denser sediments with lower 210Pb surface concentrations and inventories that indicate widespread erosion of recent sediments caused by trawling gears. Other alterations of the physical sediment properties, including thorough mixing or grain-size sorting, as well as organic carbon impoverishment, were also visible at trawled sites. This work contributes to the growing realization of the capacity of bottom trawling to alter the physical properties of surface sediments and affect the seafloor integrity over large spatial scales of the deep-sea. PMID:25111298

Mineralogic Causes of Variations in Magnetic Susceptibility of Late Pleistocene and Holocene Sediment from Great Salt Lake, Utah

USGS Publications Warehouse

Reynolds, Richard L.; Rosenbaum, Joseph G.; Thompson, Robert S.

2008-01-01

We describe here results of magnetic susceptibility (MS) measurements and magnetic mineralogy of sediments sampled in three cores from the south basin of Great Salt Lake. The cores were obtained in 1996 with a Kullenburg-type piston corer at sites in close proximity: core 96-4 at 41 deg 01.00' N, 112 deg 28.00' W and cores 96-5 and 96-6 at 41 deg 00.09' N, 112 deg 23.05' W. Cores 96-5 (2.16 m long) and -6 combine to make a composite 11.31-m sediment record. Sediments in core 96-4 (5.54 m long) correspond to the approximate depth interval of 3.9-9.6 m in the composite core of 96-5 and -6 based on similarities in the MS records as described below. The central goal of the research was to provide a sediment record of paleoenvironmental change in the northeastern Basin and Range Province over the past 40,000 years. Specific targets included a sedimentologic record of lake-level change combined with a pollen record of climatic change.

Multi-level slug tests in highly permeable formations: 2. Hydraulic conductivity identification, method verification, and field applications

USGS Publications Warehouse

Zlotnik, V.A.; McGuire, V.L.

1998-01-01

Using the developed theory and modified Springer-Gelhar (SG) model, an identification method is proposed for estimating hydraulic conductivity from multi-level slug tests. The computerized algorithm calculates hydraulic conductivity from both monotonic and oscillatory well responses obtained using a double-packer system. Field verification of the method was performed at a specially designed fully penetrating well of 0.1-m diameter with a 10-m screen in a sand and gravel alluvial aquifer (MSEA site, Shelton, Nebraska). During well installation, disturbed core samples were collected every 0.6 m using a split-spoon sampler. Vertical profiles of hydraulic conductivity were produced on the basis of grain-size analysis of the disturbed core samples. These results closely correlate with the vertical profile of horizontal hydraulic conductivity obtained by interpreting multi-level slug test responses using the modified SG model. The identification method was applied to interpret the response from 474 slug tests in 156 locations at the MSEA site. More than 60% of responses were oscillatory. The method produced a good match to experimental data for both oscillatory and monotonic responses using an automated curve matching procedure. The proposed method allowed us to drastically increase the efficiency of each well used for aquifer characterization and to process massive arrays of field data. Recommendations generalizing this experience to massive application of the proposed method are developed.Using the developed theory and modified Springer-Gelhar (SG) model, an identification method is proposed for estimating hydraulic conductivity from multi-level slug tests. The computerized algorithm calculates hydraulic conductivity from both monotonic and oscillatory well responses obtained using a double-packer system. Field verification of the method was performed at a specially designed fully penetrating well of 0.1-m diameter with a 10-m screen in a sand and gravel alluvial aquifer (MSEA site, Shelton, Nebraska). During well installation, disturbed core samples were collected every 0.6 m using a split-spoon sampler. Vertical profiles of hydraulic conductivity were produced on the basis of grain-size analysis of the disturbed core samples. These results closely correlate with the vertical profile of horizontal hydraulic conductivity obtained by interpreting multi-level slug test responses using the modified SG model. The identification method was applied to interpret the response from 474 slug tests in 156 locations at the MSEA site. More than 60% of responses were oscillatory. The method produced a good match to experimental data for both oscillatory and monotonic responses using an automated curve matching procedure. The proposed method allowed us to drastically increase the efficiency of each well used for aquifer characterization and to process massive arrays of field data. Recommendations generalizing this experience to massive application of the proposed method are developed.

Geochemistry of East Antarctic Margin Sediments Spanning the Eocene Oligocene Transition.

NASA Astrophysics Data System (ADS)

Light, J. J.; Passchier, S.

2016-12-01

The Eocene Oligocene Transition (EOT) 34 million years ago (Ma), marked the global climate change from greenhouse to icehouse, and the full establishment of the East Antarctic Ice Sheet (EAIS). The initiation of the EAIS during the EOT is believed to have been a step-wise transition; however, data resolution is low and merits the need for further study. The purpose of this study is to expand upon existing knowledge of EAIS dynamics spanning the EOT by creating a higher resolution geochemical record of cores taken from continental shelf sites 1166 in Prydz Bay and U1360 from the Wilkes Land margin. We used Inductively Coupled Plasma Optical Emission Spectrometry and Mass Spectrometry (ICP-OES/ ICP-MS) to determine the bulk chemical composition of samples. Results were used to calculate the Chemical Index of Alteration (CIA), Al2O3/TiO2 ratios, and trace elemental variation down core. CIA values for the early Oligocene in Site U1360 indicate an arid colder environment less likely to be chemically weathered. In contrast, Hole 1166A shows values similar to average shales that increase up core and abruptly decrease at the overlying Neogene diamict, suggesting a warmer more humid environment at Prydz Bay during the late Eocene. Al2O3/TiO2 ratios were used to evaluate mud provenance changes at each site. At site 1166 redox sensitive elements (Cr, Ni, and V) show similar down core distributions to one another. The changes in elemental intensities are likely being controlled by factors such as sediment provenance, changes in redox conditions and surficial weathering. We expect the outcomes of this study to allow us to interpret regional depositional environments at a higher resolution, as well as to shed light on the EAIS's step-wise initiation.

Occurrence of near-seafloor gas hydrates and associated cold vents in the Ulleung Basin, East Sea

NASA Astrophysics Data System (ADS)

Bahk, J.-J.; Kong, G.-S.; Park, Y.; Kim, J.-H.; Lee, H.; Park, Y.; Park, K.-P.

2009-04-01

During the site survey cruise for proposed drill sites of the Ulleung Basin Gas Hydrate Expedition 01, near-seafloor gas hydrates were discovered in core sediments from both regions of basin plain (2066-2012 m water depth) and southern slope (898 m) of the Ulleung Basin. The gas hydrate-bearing cores were exclusively retrieved from high backscatter intensity areas in processed 13 kHz multi-beam data, implying high seafloor reflectivity. In high-resolution (2-7 kHz) sub-bottom profiles, the coring sites are also characterized by narrow (< about 500 m wide) acoustic blank zones reaching seafloor, where they have surface expressions of low-relief (< about 5 m high) mound. In the data from a 38 kHz split-beam echosounder, which was deployed for acoustic characterization of gas bubbles, there are no apparent gas flares associated with the blank zones. The recovered gas hydrates mainly consist of disseminated nodules or veins in clayey mud, which normally occur from 5-6 m below the seafloor to the maximum penetration depth (<8 m) of the cores. In some cases, they were associated with abundant scattered authigenic carbonate nodules. Compositional and structural analyses of selected gas hydrate samples revealed that they consist of structure I hydrates which contain more than 99% methane with carbon isotope values ranging from -64 to -80 per mil (PDB). The preliminary results of the site survey cruise collectively suggest that the near-seafloor gas hydrates are related to cold vents, where high seafloor reflectivity is caused by presence of gas hydrates and authigenic carbonates. Gas seeping activity in the cold vents appears to be currently dormant.

Methane Hydrate Recovered From A Mud Volcano in Santa Monica Basin, Offshore Southern California

NASA Astrophysics Data System (ADS)

Normark, W. R.; Hein, J. R.; Powell, C. L.; Lorenson, T. D.; Lee, H. J.; Edwards, B. D.

2003-12-01

In July 2003, a short (2.1 m) piston core from the summit of a mud volcano recovered methane hydrate at a water depth of 813 m in Santa Monica Basin. The discovery core penetrated into in the hydrate as evidenced by chunks of ice and violent degassing of the core section between 162 and 212 cm depth. The core consists of shell hash and carbonate clasts (to 7-cm long) in silty mud. The methanogenic carbonates are of two types: massive, recrystallized nodular masses with an outer mm-thick sugary patina and a bivalve coquina with carbonate cement. Living clams including the genus Vesicomya, commonly found at cold-seep sites elsewhere, were recovered from the top of the core. Further sampling attempts using piston, gravity, and box corers, all of which were obtained within 15 m of the discovery core, recovered olive-brown silty mud with variable amounts of whole and fragmented bivalve shells and methanogenic carbonate fragments characteristic of cold-seep environments. Gases collected in cores adjacent to the discovery core contain elevated amounts of methane and trace amounts of heavier hydrocarbon gases, indicating some component from thermogenic sources. Hydrogen sulfide was also detected in these sediment samples. Vertical channels in one core may have served as fluid pathways. The existence of hydrate at such a shallow depth in the sediment was unexpected, however, the presence of Vesicomya and hydrogen sulfide indicate that the mud volcano is a site of active methane venting. The mud volcano, which is about 24 km west-southwest of Redondo Beach, is about 300 m in diameter at the base. No internal structure is resolved on either high resolution deep-tow boomer or single-channel air-gun profiles, most likely as a result of the gas content and sediment deformation. The diapiric structure has ascended through well-bedded sediment on the lower slope of the basin, producing as much as 30 m of bathymetric relief. It is located in an area where strike-slip motion along the San Pedro Basin fault zone to the south is replaced by convergent motion to the north. The source horizon for the gas in the hydrate is unknown but appears to be collecting in beds as shallow as 200 m below the regional seafloor based on the presence of a strong and irregular reflection interval.

Geological controls on the occurrence of gas hydrate from core, downhole log, and seismic data in the Shenhu area, South China Sea

USGS Publications Warehouse

Xiujuan Wang,; ,; Collett, Timothy S.; Lee, Myung W.; Yang, Shengxiong; Guo, Yiqun; Wu, Shiguo

2014-01-01

Multi-channel seismic reflection data, well logs, and recovered sediment cores have been used in this study to characterize the geologic controls on the occurrence of gas hydrate in the Shenhu area of the South China Sea. The concept of the "gas hydrate petroleum system" has allowed for the systematic analysis of the impact of gas source, geologic controls on gas migration, and the role of the host sediment in the formation and stability of gas hydrates as encountered during the 2007 Guangzhou Marine Geological Survey Gas Hydrate Expedition (GMGS-1) in the Shenhu area. Analysis of seismic and bathymetric data identified seventeen sub-linear, near-parallel submarine canyons in this area. These canyons, formed in the Miocene, migrated in a northeasterly direction, and resulted in the burial and abandonment of canyons partially filled by coarse-grained sediments. Downhole wireline log (DWL) data were acquired from eight drill sites and sediment coring was conducted at five of these sites, which revealed the presence of suitable reservoirs for the occurrence of concentrated gas hydrate accumulations. Gas hydrate-bearing sediment layers were identified from well log and core data at three sites mainly within silt and silt clay sediments. Gas hydrate was also discovered in a sand reservoir at one site as inferred from the analysis of the DWL data. Seismic anomalies attributed to the presence of gas below the base of gas hydrate stability zone, provided direct evidence for the migration of gas into the overlying gas hydrate-bearing sedimentary sections. Geochemical analyses of gas samples collected from cores confirmed that the occurrence of gas hydrate in the Shenhu area is controlled by the presence thermogenic methane gas that has migrated into the gas hydrate stability zone from a more deeply buried source.

Initiation of long-term coupled microbiological, geochemical, and hydrological experimentation within the seafloor at North Pond, western flank of the Mid-Atlantic Ridge

USGS Publications Warehouse

Edwards, K.J.; Backert, N.; Bach, W.; Becker, K.; Klaus, A.; Griffin, Dale W.; Anderson, L.; Haddad, A.G.; Harigane, Y.; Campion, P.L.; Hirayama, H.; Mills, H.J.; Hulme, S.M.; Nakamura, K.; Jorgensen, S.L.; Orcutt, B.; Insua, T.L.; Park, Y.-S.; Rennie, V.; Salas, E.C.; Rouxel, O.; Wang, F.; Russel, J.A.; Wheat, C.G.; Sakata, K.; Brown, M.; Magnusson, J.L.; Ettlinger, Z.

2012-01-01

Integrated Ocean Drilling Program (IODP) Expedition 336 successfully initiated subseafloor observatory science at a young mid-ocean-ridge flank setting. All of the drilled sites are located in the North Pond region of the Atlantic Ocean (22??45'N, 46??05'W) in 4414-4483 m water depth. This area is known from previous ocean drilling and site survey investigations as a site of particularly vigorous circulation of seawater in permeable 8 Ma basaltic basement underlying a <300 m thick sedimentary pile. Understanding how this seawater circulation affects microbial and geochemical processes in the uppermost basement was the primary science objective of Expedition 336. Basement was cored and wireline-logged in Holes U1382A and U1383C. Upper oceanic crust in Hole U1382A, which is only 50 m west of Deep Sea Drilling Project (DSDP) Hole 395A, recovered 32 m of core between 110 and 210 meters below seafloor (mbsf). Core recovery in basement was 32%, yielding a number of volcanic flow units with distinct geochemical and petrographic characteristics. A unit of sedimentary breccia containing clasts of basalt, gabbroic rocks, and mantle peridotite was found intercalated between two volcanic flow units and was interpreted as a rock slide deposit. From Hole U1383C we recovered 50.3 m of core between 69.5 and 331.5 mbsf (19%). The basalts are aphyric to highly plagioclase-olivine-phyric tholeiites that fall on a liquid line of descent controlled by olivine fractionation. They are fresh to moderately altered, with clay minerals (saponite, nontronite, and celadonite), Fe oxyhydroxide, carbonate, and zeolite as secondary phases replacing glass and olivine to variable extents. In addition to traditional downhole logs, we also used a new logging tool for detecting in situ microbial life in ocean floor boreholes-the Deep Exploration Biosphere Investigative tool (DEBI-t). Sediment thickness was ???90 m at Sites U1382 and U1384 and varied between 38 and 53 m at Site U1383. The sediments are predominantly nannofossil ooze with layers of coarse foraminiferal sand and occasional pebble-size clasts of basalt, serpentinite, gabbroic rocks, and bivalve debris. The bottommost meters of sections cored with the advanced piston corer feature brown clay. Extended core barrel coring at the sediment/basement interface recovered <1 m of brecciated basalt with micritic limestone. Sediments were intensely sampled for geochemical pore water analyses and microbiological work. In addition, high-resolution measurements of dissolved oxygen concentration were performed on the whole-round sediment cores. Major strides in ridge-flank studies have been made with subseafloor borehole observatories (CORKs) because they facilitate combined hydrological, geochemical, and microbiological studies and controlled experimentation in the subseafloor. During Expedition 336, two fully functional observatories were installed in two newly drilled holes (U1382A and U1383C) and an instrument and sampling string were placed in an existing hole (395A). Although the CORK wellhead in Hole 395A broke off and Hole U1383B was abandoned after a bit failure, these holes and installations are intended for future observatory science targets. The CORK observatory in Hole U1382A has a packer seal in the bottom of the casing and monitors/samples a single zone in uppermost oceanic crust extending from 90 to 210 mbsf. Hole U1383C was equipped with a three-level CORK observatory that spans a zone of thin basalt flows with intercalated limestone (???70-146 mbsf), a zone of glassy, thin basaltic flows and hyaloclastites (146-200 mbsf), and a lowermost zone (???200-331.5 mbsf) of more massive pillow flows with occasional hyaloclastites in the upper part.

Presence and distribution of wastewater-derived pharmaceuticals in soil irrigated with reclaimed water

USGS Publications Warehouse

Kinney, C.A.; Furlong, E.T.; Werner, S.L.; Cahill, J.D.

2006-01-01

Three sites in the Front Range of Colorado, USA, were monitored from May through September 2003 to assess the presence and distribution of pharmaceuticals in soil irrigated with reclaimed water derived from urban wastewater. Soil cores were collected monthly, and 19 pharmaceuticals, all of which were detected during the present study, were measured in 5-cm increments of the 30-cm cores. Samples of reclaimed water were analyzed three times during the study to assess the input of pharmaceuticals. Samples collected before the onset of irrigation in 2003 contained numerous pharmaceuticals, likely resulting from the previous year's irrigation. Several of the selected pharmaceuticals increased in total soil concentration at one or more of the sites. The four most commonly detected pharmaceuticals were erythromycin, carbamazepine, fluoxetine, and diphenhydramine. Typical concentrations of the individual pharmaceuticals observed were low (0.02-15 ??g/kg dry soil). The existence of subsurface maximum concentrations and detectable concentrations at the lowest sampled soil depth might indicate interactions of soil components with pharmaceuticals during leaching through the vadose zone. Nevertheless, the present study demonstrates that reclaimed-water irrigation results in soil pharmaceutical concentrations that vary through the irrigation season and that some compounds persist for months after irrigation. ?? 2006 SETAC.

Tree Sampling as a Method to Assess Vapor Intrusion Potential at a Site Characterized by VOC-Contaminated Groundwater and Soil.

PubMed

Wilson, Jordan L; Limmer, Matthew A; Samaranayake, V A; Schumacher, John G; Burken, Joel G

2017-09-19

Vapor intrusion (VI) by volatile organic compounds (VOCs) in the built environment presents a threat to human health. Traditional VI assessments are often time-, cost-, and labor-intensive; whereas traditional subsurface methods sample a relatively small volume in the subsurface and are difficult to collect within and near structures. Trees could provide a similar subsurface sample where roots act as the "sampler' and are already onsite. Regression models were developed to assess the relation between PCE concentrations in over 500 tree-core samples with PCE concentrations in over 50 groundwater and 1000 soil samples collected from a tetrachloroethylene- (PCE-) contaminated Superfund site and analyzed using gas chromatography. Results indicate that in planta concentrations are significantly and positively related to PCE concentrations in groundwater samples collected at depths less than 20 m (adjusted R 2 values greater than 0.80) and in soil samples (adjusted R 2 values greater than 0.90). Results indicate that a 30 cm diameter tree characterizes soil concentrations at depths less than 6 m over an area of 700-1600 m 2 , the volume of a typical basement. These findings indicate that tree sampling may be an appropriate method to detect contamination at shallow depths at sites with VI.

Tree sampling as a method to assess vapor intrusion potential at a site characterized by VOC-contaminated groundwater and soil

USGS Publications Warehouse

Wilson, Jordan L.; Limmer, Matthew A.; Samaranayake, V. A.; Schumacher, John G.; Burken, Joel G.

2017-01-01

Vapor intrusion (VI) by volatile organic compounds (VOCs) in the built environment presents a threat to human health. Traditional VI assessments are often time-, cost-, and labor-intensive; whereas traditional subsurface methods sample a relatively small volume in the subsurface and are difficult to collect within and near structures. Trees could provide a similar subsurface sample where roots act as the “sampler’ and are already onsite. Regression models were developed to assess the relation between PCE concentrations in over 500 tree-core samples with PCE concentrations in over 50 groundwater and 1000 soil samples collected from a tetrachloroethylene- (PCE-) contaminated Superfund site and analyzed using gas chromatography. Results indicate that in planta concentrations are significantly and positively related to PCE concentrations in groundwater samples collected at depths less than 20 m (adjusted R2 values greater than 0.80) and in soil samples (adjusted R2 values greater than 0.90). Results indicate that a 30 cm diameter tree characterizes soil concentrations at depths less than 6 m over an area of 700–1600 m2, the volume of a typical basement. These findings indicate that tree sampling may be an appropriate method to detect contamination at shallow depths at sites with VI.

Long-term ground-water monitoring program and performance-evaluation plan for the extraction system at the former Nike Missile Battery Site, Aberdeen Proving Ground, Maryland

USGS Publications Warehouse

Senus, Michael P.; Tenbus, Frederick J.

2000-01-01

This report presents lithologic and ground-water-quality data collected during April and May 2000 in the remote areas of the tidal wetland of West Branch Canal Creek, Aberdeen Proving Ground, Maryland. Contamination of the Canal Creek aquifer with volatile organic compounds has been documented in previous investigations of the area. This study was conducted to investigate areas that were previously inaccessible because of deep mud and shallow water, and to support ongoing investigations of the fate and transport of volatile organic compounds in the Canal Creek aquifer. A unique vibracore drill rig mounted on a hovercraft was used for drilling and ground-water sampling. Continuous cores of the wetland sediment and of the Canal Creek aquifer were collected at five sites. Attempts to sample ground water were made by use of a continuous profiler at 12 sites, without well installation, at a total of 81 depths within the aquifer. Of those 81 attempts, only 34 sampling depths produced enough water to collect samples. Ground-water samples from two sites had the highest concentrations of volatile organic compounds?with total volatile organic compound concentrations in the upper part of the aquifer ranging from about 15,000 to 50,000 micrograms per liter. Ground-water samples from five sites had much lower total volatile organic compound concentrations (95 to 2,100 micrograms per liter), whereas two sites were essentially not contaminated, with total volatile organic compound concentrations less than or equal to 5 micrograms per liter.

Mineralogical, chemical, and physical properties of the regolith overlying crystalline rocks, Fairfax County, Virginia: a preliminary report

USGS Publications Warehouse

Leo, Gerhard W.; Pavich, M.J.; Obermeier, Stephen F.

1977-01-01

Undisturbed cores of saprolite developed on crystalline rocks of the Piedmont Province in Fairfax County, Virginia have been obtained using a combination of Shelby tubes, Denison sampler, and modified diamond core-drilling. The principal purpose of the core study is to correlate variations in chemistry, mineralogy and texture with engineering properties throughout the weathering profile. Coring sites were chosen to obtain a maximum depth of weathering on diverse lithologies. The rocks investigated include pelitic schist, metagraywacke, granite, diabase and serpentinite. Four to twelve samples per core were selected, depending on thickness of 1) the weathering profile (from about 1 m in serpentinite to more than 30 m in pelitic schist) and on 2) megascopic changes in saprolite character for analysis of petrography, texture, clay mineralogy andd major element chemistry. Shear strength and compressibility were determined on corresponding segments of core. Standard penetration tests were performed adjacent to coring sites to evaluate engineering properties in situ. Geochemical changes of saprolite developed from each rock type follow predictable trends from fresh rock to soil profile, with relative Increases in Si, Ti, Al, Fe3+ and H20; variable K; and relative loss of Fe 2+, Mg, Ca, and Na. These variations are more pronounced in the weathering profiles over mafic and ultramafic rocks than metagraywacke. Clay minerals in granite, schist and metagraywacke saprolite are kaolinite, dioctahedral vermiculite, interlayered micavermiculite, and minor illite. Gibbsite is locally developed in near-surface samples of schist. Standard penetration test data for the upper 7 m of saprolite over schist and metagraywacke suggest alternations between stronger and weaker horizons than probably reflect variations in lithology including the presence of quartz lenses. Results for granite saprolite are most consistent but indicate lower strength. Shear strength increases fairly regularly downward in the weathering profile. The engineering behavior of diabase saprolite is controlled by a dense, plastic, near-surface clay layer (montmorillonite and kaolinite)overlying rock which is weathered to a granular state (grus), while engineering properties of serpentinite are determined by a very thin weathering profile.

The Impact of Hypoxia on Foraminifera in the Northern Mississippi Bight

NASA Astrophysics Data System (ADS)

Brunner, C. A.; Kuykendall, J. I.; Hartmann, V. A.; Howden, S. D.

2008-12-01

Hypoxia was measured in bottom water of the northern Mississippi Bight in the summers of 2006 and 2008. In 2006, the area covered approximately 200 km2, extending along the 10-m isobath from Horn Island to the eastern end of Petit Bois Island and southward to the USM buoy near the 20-m isobath. In 2008, the area increased, extending in addition southward along the 10-m isobath seaward of the Chandeleur Islands. Hypoxia was also measured at a site near the USM buoy in August 2004 and at nearby FH-2 in August 2003, and anecdotal reports have suggested hypoxia in August of other years. Because hypoxia in the Mississippi bight is much smaller and appears shorter than seasonal hypoxia in the Louisiana bight, we wanted to assess whether or not these events affect the benthic meiofauna, in this instance, using benthic foraminifers. Benthic foraminifers were collected in box and diver cores within the area of known hypoxia in June when bottom water was well oxygenated and in July and August when conditions were hypoxic. For comparison, cores were also collected east of the area of known hypoxia. All cores were collected from 20 m water depth, and each sample consisted of two replicate cores. The cores were sliced into 1-cm slabs from the top to 5 cm depth, stained with rose Bengal, and counted for live specimens. The assemblage of living foraminifers in normally oxygenated conditions consisted of ten common species, in addition to at least ten rare species. Only 24% of the specimens were hypoxia-tolerant species. In contrast, two hypoxia-tolerant species, Nonionella basiloba and Bolivina lowmani, comprising 80-90% of the fauna, dominated the live assemblage during the hypoxic periods. In addition, the biomass of the hypoxic samples was four times that of the control samples, though habitation depths were not significantly different. Interestingly, at one site sampled in June 2005, a turbid layer (possibly a fluid mud) had moved into the area covering the top two centimeters of the seafloor. The fluid-filled mud was dominated by the same hypoxia- tolerant species, Nonionella basiloba with significant numbers of Bolivina lowmani. We conclude based on these preliminary results that the meiofauna-represented by benthic foraminifers-responds to the August hypoxia with dominance of hypoxia-tolerant species.

What controls the oxidative ratio of UK peats? A multi-site study of elemental CHNO concentrations in peat cores

NASA Astrophysics Data System (ADS)

Clay, Gareth; Worrall, Fred; Masiello, Carrie

2013-04-01

The oxidative ratio (OR) is the amount of CO2 sequestered in the terrestrial biosphere for each mol of O2 produced. The OR governs the effectiveness of a terrestrial biome to mitigate the impact of anthropogenic CO2 emissions and it has been used to calculate the balance of terrestrial and oceanic carbon sinks across the globe. However, few studies have investigated the controls of the variability in OR. What factors affect OR - climate? Soil type? Vegetation type? N deposition? Land use? Land use change? Small shifts in OR could have important implications in the global partitioning of CO2 between the atmosphere, biosphere, and oceans. This study looks at peat soils from a series of sites representing a climatic transect across the UK. Duplicate peat cores were taken, along with samples of above-ground vegetation and litter, from sites in northern Scotland (Forsinard), southern Scotland (Auchencorth), northern England (Moor House; Thorne Moor) through the Welsh borders (Whixhall Moss) and Somerset levels (Westhay Moor) to Dartmoor and Bodmin Moor in the south west of England. Sub-samples of the cores were analysed for their CHNO concentrations using a Costech ECS 4010 Elemental combustion system. Using the method of Masiello et al. (2008), OR values could be calculated from these elemental concentrations. Results show that OR values of UK peats varied between 0.82 and 1.27 with a median value of 1.08 which is within the range of world soils. There were significant differences in OR of the peat between sites with the data falling into two broad groupings - Group 1: Forsinard, Auchencorth, Dartmoor and Bodmin Moor; Group 2: Moor House, Thorne Moor, Westhay Moor, Whixhall Moss. Whilst there were significant changes (p < 0.05) in elemental ratios with increasing peat depth (increasing C:N ratio and decreasing O:C ratio) there was no significant difference overall in OR with depth. This paper will explore some of the possible controlling factors on these ratios. Local vegetation was also sampled along with agricultural soils from the local area of the peat cores to compare the relative differences in different mediums. Significant differences (p < 0.01) between vegetation, agricultural soils and surface peat layers were found where vegetation had OR values of 1.03 ± 0.04 and agricultural soils had OR values of 1.15 ± 0.04. Further discussion of these results from these comparisons is also presented in this study.

Molecular analysis of bacterial diversity in kerosene-based drilling fluid from the deep ice borehole at Vostok, East Antarctica.

PubMed

Alekhina, Irina A; Marie, Dominique; Petit, Jean Robert; Lukin, Valery V; Zubkov, Vladimir M; Bulat, Sergey A

2007-02-01

Decontamination of ice cores is a critical issue in phylogenetic studies of glacial ice and subglacial lakes. At the Vostok drill site, a total of 3650 m of ice core have now been obtained from the East Antarctic ice sheet. The ice core surface is coated with a hard-to-remove film of impure drilling fluid comprising a mixture of aliphatic and aromatic hydrocarbons and foranes. In the present study we used 16S rRNA gene sequencing to analyze the bacterial content of the Vostok drilling fluid sampled from four depths in the borehole. Six phylotypes were identified in three of four samples studied. The two dominant phylotypes recovered from the deepest (3400 and 3600 m) and comparatively warm (-10 degrees C and -6 degrees C, respectively) borehole horizons were from within the genus Sphingomonas, a well-known degrader of polyaromatic hydrocarbons. The remaining phylotypes encountered in all samples proved to be human- or soil-associated bacteria and were presumed to be drilling fluid contaminants of rare occurrence. The results obtained indicate the persistence of bacteria in extremely cold, hydrocarbon-rich environments. They show the potential for contamination of ice and subglacial water samples during lake exploration, and the need to develop a microbiological database of drilling fluid findings.

Paleolatitude Records of the Western Pacific as Determined From DSDP/ODP Basaltic Cores

NASA Astrophysics Data System (ADS)

Liu, Q.; Zhao, X.; Yan, M.; Riisager, P.; Lo, C.

2008-12-01

We report here the new paleomagnetic, rock magnetic, and Ar-Ar geochronologic results of our recent completed project, which aims to determine the Cretaceous paleomagnetic paleolatitude record and the architecture of the volcanic basins in the western Pacific Ocean. The new results, in concert with our paleomagnetic research on ODP rocks recovered from the Ontong Java Plateau (OJP), suggest that various plateaus and basins in the western Pacific had similar plate-tectonic setting (paleolatitude) and ages with that of OJP at time of emplacement (~120 Ma). Basalts sampled from Deep Sea Drilling Project (DSDP) and Ocean Drilling Program (ODP) sites of the greater OJP as well as from obducted sections in the Solomon Islands of Malaita and Santa Isabel are strikingly uniform in petrologic and geochemical characteristics. Many of these cores, especially those from DSDP sites, have not been well-studied paleomagnetically and hence underutilized for tectonic study. We carefully re-sampled and systematic demagnetized and analyzed 925 basaltic cores from 15 sites drilled by10 DSDP/ODP Legs in the western and central Pacific, which represents a unique possibility for averaging out secular variation to obtain a well-defined paleolatitude estimate. The most important findings from this study include: (1). most basins formed during the Cretaceous long normal magnetic period with similar Ar-Ar ages as the OJP; (2) East Mariana, Pigafetta, the upper flow unit in the Nauru basin and Mid-Pacific Guyots all yielded similar paleolatitudes as those for OJP, suggesting the volcanic eruptions of flows in these basins are likely related to the emplacement of the OJP; and (3) the lower flow unit in the Nauru basin yields a paleolatitude that is ~10° further south and the age is more than 10 m.y. older than these of the OJP.

14CO in Antarctic Glacial Ice as a Tracer of Changes in Atmospheric OH Abundance from 1880 AD to Present

NASA Astrophysics Data System (ADS)

Neff, P. D.; Petrenko, V. V.; Hmiel, B.; Smith, A. W.; Buizert, C.; Etheridge, D. M.; Murray, L. T.; Dyonisius, M.

2017-12-01

OH is the main tropospheric oxidant and determines the lifetime of methane and most other trace gases in the atmosphere, thereby controlling the amount of greenhouse warming that these gases can produce. Changes in [OH] in response to large changes in reactive trace gas emissions (which may occur in the future) are uncertain. Measurements of 14C-containing carbon monoxide (14CO) and other tracers such as methyl chloroform over the last ≈25 years have been successfully used to monitor changes in average OH concentration ([OH]), but there are no observational constraints on [OH] further back in time. Reconstructions of 14CO from ice cores could in principle provide such constraints but are complicated by in-situ production of 14CO by cosmic rays directly in the ice. Recent work in Antarctica and Greenland shows that this in-situ component would be relatively small and can be accurately corrected for at sites with very high snow accumulation rates. We propose to sample firn-air and shallow ice to ≈230 m depth at Law Dome, Antarctica (site DE-08, 1.2 m a-1 ice-equivalent snow accumulation), extracting trapped air from the ice cores on-site using a new large-volume ice melting system. 14CO will be analyzed in firn and ice core air samples, and accurate corrections made for the in-situ cosmogenic 14CO component in the ice—allowing for the atmospheric 14CO history to be reconstructed. This 14CO history will be interpreted with the aid of a chemistry-transport model to place the first observational constraints on the variability of Southern Hemisphere [OH] since ≈1880 AD.

Reconstructing Oceanographic Conditions From the Holocene to the Last Glacial Maximum in the Bay of Bengal

NASA Astrophysics Data System (ADS)

Miller, J.; Dekens, P. S.; Weber, M. E.; Spiess, V.; France-Lanord, C.

2015-12-01

The International Ocean Discovery Program (IODP) Expedition 354 drilled 7 sites in the Bay of Bengal, providing a unique opportunity to improve our understanding of the link between glacial cycles, tropical oceanographic changes, and monsoon strength. Deep-sea sediment cores of the Bengal Fan fluctuate between sand, hemipelagic and terrestrial sediment layers. All but one of the sites (U1454) contain a layer of calcareous clay in the uppermost part of the core that is late Pleistocene in age. During Expedition 354 site U1452C was sampled at high resolution (every 2cm) by a broad group of collaborators with the goal of reconstructing monsoon strength and oceanographic conditions using a variety of proxies. The top 480 cm of site U1452C (8ºN, 87ºE, 3671m water depth) contains primarily nannofossil rich calcareous clay. The relatively high abundance of foraminifera will allow us to generate a high resolution record of sea surface temperature (SST) and sea surface salinity (SSS) using standard foraminifera proxies. We will present oxygen isotopes (δ18O) and Mg/Ca data of mixed layer planktonic foraminifera from the top 70cm of the core, representing the Holocene to the last glacial maximum. δ18O of planktonic foraminifera records global ice volume and local SST and SSS, while Mg/Ca of foraminifera is a proxy for SST. The paired Mg/Ca and δ18O measurements on the same samples of foraminifera, together with published estimates with global ocean δ18O, can be used to reconstruct both SST and local δ18O of seawater, which is a function of the evaporation/precipitation balance. In future work, the local SSS and SST during the LGM will be paired with terrestrial and other oceanic proxies to increase our understanding of how global climate is connected to monsoon strength.

Can a rapid underwater video approach enhance the benthic assessment capability of the National Coastal Condition Assessmentin the Great Lakes?

EPA Science Inventory

In the U.S. National Coastal Condition Assessment (NCCA) field survey in summer 2010, over 400 sites in the nearshore zone of the U.S. Great Lakes were sampled. As a supplement to core NCCA benthic taxonomy and sediment chemistry, underwater video images of the bottom condition ...

Dating sediment cores from Hudson River marshes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Robideau, R.; Bopp, R.F.

1993-03-01

There are several methods for determining sediment accumulation rates in the Hudson River estuary. One involves the analysis of the concentration of certain radionuclides in sediment core sections. Radionuclides occur in the Hudson River as a result of: natural sources, fallout from nuclear weapons testing and low level aqueous releases from the Indian Point Nuclear Power Facility. The following radionuclides have been studied in the authors work: Cesium-137, which is derived from global fallout that started in the 1950's and has peaked in 1963. Beryllium-7, a natural radionuclide with a 53 day half-life and found associated with very recently depositedmore » sediments. Another useful natural radionuclide is Lead-210 derived from the decay of Radon-222 in the atmosphere. Lead-210 has a half-life of 22 years and can be used to date sediments up to about 100 years old. In the Hudson River, Cobalt-60 is a marker for Indian Point Nuclear Reactor discharges. The author's research involved taking sediment core samples from four sites in the Hudson River Estuarine Research Reserve areas. These core samples were sectioned, dried, ground and analyzed for the presence of radionuclides by the method of gamma-ray spectroscopy. The strength of each current pulse is proportional to the energy level of the gamma ray absorbed. Since different radionuclides produce gamma rays of different energies, several radionuclides can be analyzed simultaneously in each of the samples. The data obtained from this research will be compared to earlier work to obtain a complete chronology of sediment deposition in these Reserve areas of the river. Core samples may then by analyzed for the presence of PCB's, heavy metals and other pollutants such as pesticides to construct a pollution history of the river.« less

Stratigraphy and depositional history of the Apollo 17 drill core

NASA Technical Reports Server (NTRS)

Taylor, G. J.; Warner, R. D.; Keil, K.

1979-01-01

Lithologic abundances obtained from modal analyses of a continuous string of polished thin sections indicate that the Apollo 17 deep drill core can be divided into three main zones: An upper zone (0-19 cm depth) characterized by high abundances of agglutinates (30%) and a high ratio of mare to non-mare lithic fragments (less than 0.8); a coarse-grained layer (24-56 cm) rich in fragments of high-Ti mare basalts and mineral fragments derived from them, and poor in agglutinates (6%); and a lower zone (56-285 cm) characterized by variable but generally high agglutinate abundances (25%) and a low ratio of mare to nonmare lithic fragments (0.6). Using observations of the geology of the landing site, the principles of cratering dynamics, and the vast amount of data collected on the core, the following depositional history for the section of regolith sampled by the Apollo 17 drill core: was devised.

Sample descriptions and geophysical logs for cored well BP-3-USGS, Great Sand Dunes National Park and Preserve, Alamosa County, Colorado

USGS Publications Warehouse

Grauch, V.J.S.; Skipp, Gary L.; Thomas, Jonathan V.; Davis, Joshua K.; Benson, Mary Ellen

2015-01-01

BP-3-USGS was sited to test hypotheses developed from geophysical studies and to answer questions about the history and evolution of Pliocene and Pleistocene Lake Alamosa, which is represented by lacustrine deposits sampled by the well. The findings reported here represent a basis from which future studies can answer these questions and address other important scientific questions in the San Luis Valley regarding geologic history and climate change, groundwater hydrology, and geophysical interpretation.

Description and Analysis of Core Samples: The Lunar Experience

NASA Technical Reports Server (NTRS)

McKay, David S.; Allton, Judith H.

1997-01-01

Although no samples yet have been returned from a comet, extensive experience from sampling another solar system body, the Moon, does exist. While, in overall structure, composition, and physical properties the Moon bears little resemblance to what is expected for a comet, sampling the Moon has provided some basic lessons in how to do things which may be equally applicable to cometary samples. In particular, an extensive series of core samples has been taken on the Moon, and coring is the best way to sample a comet in three dimensions. Data from cores taken at 24 Apollo collection stations and 3 Luna sites have been used to provide insight into the evolution of the lunar regolith. It is now well understood that this regolith is very complex and reflects gardening (stirring of grains by micrometeorites), erosion (from impacts and solar wind sputtering), maturation (exposure on the bare lunar surface to solar winds ions and micrometeorite impacts) and comminution of coarse grains into finer grains, blanket deposition of coarse-grained layers, and other processes. All of these processes have been documented in cores. While a cometary regolith should not be expected to parallel in detail the lunar regolith, it is possible that the upper part of a cometary regolith may include textural, mineralogical, and chemical features which reflect the original accretion of the comet, including a form of gardening. Differences in relative velocities and gravitational attraction no doubt made this accretionary gardening qualitatively much different than the lunar version. Furthermore, at least some comets, depending on their orbits, have been subjected to impacts of the uppermost surface by small projectiles at some time in their history. Consequently, a more recent post-accretional gardening may have occurred. Finally, for comets which approach the sun, large scale erosion may have occurred driven by gas loss. The uppermost material of these comets may reflect some of the features of this erosional process, such as crust formation, and variations with depth might be expected. Overall, the upper few meters of a comet may be as complex in their own way as the upper few meters of the lunar regolith have proven to be, and by analogy, detailed studies of core samples containing this depth information will be needed to understand these processes and the details of the accretional history and the subsequent alteration history of comets.

Chronology of Late Quaternary Glacial Cycles in the Bering Trough, Gulf of Alaska: Constraints from Core-Log-Seismic Integration across the Continental Shelf and Slope

NASA Astrophysics Data System (ADS)

Clary, W. A.; Worthington, L. L.; Daigle, H.; Slagle, A. L.; Gulick, S. P. S.

2016-12-01

Sediments offshore Southern Alaska offer a natural laboratory to study glacial erosion, sediment deposition, and orogenesis. A major goal of Integrated Ocean Drilling Program (IODP) Expedition 341 was investigation of interrelationships among tectonic processes, paleoclimate, and glacial activity. Here, we focus on core-log-seismic integration of IODP Sites U1420 and U1421 on the shallow shelf and slope near the Bering Trough, a glacially derived shelf-crossing landform. These sites sample glacial and marine sediments that record a history of sedimentation following the onset of glacial intensification near the mid-Pleistocene transition (1.2 Ma) and Yakutat microplate convergence with North America. Ocean drilling provides important stratigraphic, physical properties, and age data in depth which support development of a stratigraphic model that can be extended across the shelf if carefully calibrated to local and regional seismic surveys. We use high resolution multichannel seismic, core, and logging data to develop a time-depth relationship (TDR) and update the developing chronostratigraphic model based on correlation of seismic sequence boundaries and drilling-related data, including biostratigraphic and paleomagnetic age controls. We calibrate, combine, and interpolate core and logging data at each site to minimize gaps in physical property information and generate synthetic seismic traces. At Site U1421, vertical seismic profiling further constrains the TDR, and provides input for the initial velocity model during the tie. Finally, we match reflectors in the synthetic trace with events in nearby seismic reflection data to establish a TDR at each site. We can use this relationship to better interpret the development of the Bering Trough, a recurring and favored path for ice streams and glacial advance. Initial results suggest late Pleistocene sedimentation rates of at least 1 km/m.y. on average, and variable sedimentation rates which are possibly correlated with paleoenvironmental indicators such as sea ice related species of diatoms.

Temporal Geochemical Variations in Glass and Minerals from Early Oligocene to Miocene Volcanic Sediments, DSDP Site 296, Kyushu Palau Ridge: Is There a Geochemical Signal for Arc Rifting?

NASA Astrophysics Data System (ADS)

Hickey-Vargas, R.; Samajpati, E.

2015-12-01

Volcaniclastic sediments and sedimentary rocks from DSDP Site 296, located within a basin at the crest of the northern Kyushu Palau ridge (KPR), record the latter part of the first stage of Izu Bonin Mariana (IBM) arc evolution, up to the cessation of volcanism caused by arc rifting and opening of the Shikoku basin. The lower section consists of early to late Oligocene coarse volcaniclastic sedimentary rocks, and is overlain by late Oligocene to Pleistocene nannofossil chalks and oozes with volcanic sand and ash-rich layers. We have studied the chemical composition of pyroxene, feldspar and glass grains separated from the coarse volcaniclastic rocks at depths from 435 to 1082 meters below sea floor, and of glass shards in layers in the overlying sediments of late Oligocene to early Miocene age. Overall, pyroxene and feldspar compositions show little systematic variation with depth in the core, although for pyroxene, highest En and highest Al2O3 contents are found in the interval from 600-900 meters bsf. An contents in feldspars show a bimodal distribution throughout the core, with most values > 90 or in the range 60-70, with more abundant intermediate compositions in the 600-900 meter interval. Compositions of glass shards vary widely, from basalt to rhyolite, and from low K, light rare earth (LREE)-depleted to high K, strongly LREE-enriched character, without systematic variation with depth in the core. However, all cores sampled from early Oligocene to early Miocene contain relatively low K basalt and basaltic andesite glass. Like the pyroxenes, a wider range of compositions is found in glass from the 600 to 900 mbsf interval. The Site 296 sequence overlaps in age with the uppermost sedimentary section of recently drilled IODP Site 1438, located 230 km to the southwest in the Amami Sankaku basin, thus the two sites may contain volcanic debris shed from contemporaneous sections of the KPR.

Ensemble-Based Computational Approach Discriminates Functional Activity of p53 Cancer and Rescue Mutants

PubMed Central

Demir, Özlem; Baronio, Roberta; Salehi, Faezeh; Wassman, Christopher D.; Hall, Linda; Hatfield, G. Wesley; Chamberlin, Richard; Kaiser, Peter; Lathrop, Richard H.; Amaro, Rommie E.

2011-01-01

The tumor suppressor protein p53 can lose its function upon single-point missense mutations in the core DNA-binding domain (“cancer mutants”). Activity can be restored by second-site suppressor mutations (“rescue mutants”). This paper relates the functional activity of p53 cancer and rescue mutants to their overall molecular dynamics (MD), without focusing on local structural details. A novel global measure of protein flexibility for the p53 core DNA-binding domain, the number of clusters at a certain RMSD cutoff, was computed by clustering over 0.7 µs of explicitly solvated all-atom MD simulations. For wild-type p53 and a sample of p53 cancer or rescue mutants, the number of clusters was a good predictor of in vivo p53 functional activity in cell-based assays. This number-of-clusters (NOC) metric was strongly correlated (r2 = 0.77) with reported values of experimentally measured ΔΔG protein thermodynamic stability. Interpreting the number of clusters as a measure of protein flexibility: (i) p53 cancer mutants were more flexible than wild-type protein, (ii) second-site rescue mutations decreased the flexibility of cancer mutants, and (iii) negative controls of non-rescue second-site mutants did not. This new method reflects the overall stability of the p53 core domain and can discriminate which second-site mutations restore activity to p53 cancer mutants. PMID:22028641

Occurrence of and trends in selected sediment-associated contaminants in Caddo Lake, East Texas, 1940-2002

USGS Publications Warehouse

Wilson, Jennifer T.

2003-01-01

Bottom-sediment cores were collected from four sites in Caddo Lake in East Texas during May 2002 for analyses of radionuclides (for age dating), organochlorine pesticides, polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs), and major and trace elements, and to describe the occurrence and trends of these sediment-associated contaminants. The Goose Prairie Creek and Harrison Bayou sites receive drainage from an area that includes parts of the now-closed Longhorn Army Ammunitions Plant. The mid-lake site is relatively close to dense oil and gas operations in the lake. The Carter Lake site receives minimal discharge from developed areas. Sediment age (deposition) dates represented in the cores ranged from 1940 to 2002. The only organochlorine compounds detected in all core samples were the DDT degradation products DDE or DDD, and PCB Aroclors 1242, 1254, and 1260 were detected only at the Goose Prairie Creek site. One or more of the DDE concentrations at all sites exceeded a consensus-based threshold effect concentration (on benthic biota), but none exceeded a consensus-based probable effect concentration. The Goose Prairie Creek site had significant downward trends in concentrations of organochlorine compounds, except for no trend in DDE concentrations. The Ammunitions Plant is a possible historical source of the few organochlorine compounds detected at the Goose Prairie Creek and Harrison Bayou sites. PAH concentrations at all sites were below respective threshold effect concentrations. Highest PAH concentrations at all four sites were of C2- alkylated naphthalenes. Nearly all statistically significant PAH trends in the cores were downward. On the basis of PAH source-indicator ratios, the majority of PAH compounds appear to have originated from uncombusted sources such as leaks or spills from oil and gas operations or vehicles (automobiles, boats, aircraft) in the Caddo Lake area. Concentrations of several of the eight trace elements with threshold effect concentrations and probable effect concentrations (among 26 analyzed) were above the respective threshold effect concentrations, but all, except one lead concentration at the Goose Prairie Creek site (deposited about 1961), were below respective probable effect concentrations. Among trace element concentrations at the four sites, lead and mercury were consistently relatively high at the Goose Prairie Creek site. Again the Ammunitions Plant, because of its proximity and history of industrial activities, is the suspected primary source. Statistically significant trends in trace element concentrations were mixed, but more were downward than upward. Computations to indicate the dominant source (atmospheric fallout or drainage area) of mercury to the Caddo Lake sediment core sites (except Carter Lake) indicate that about one-third of the mercury at the Goose Prairie Creek site might result from drainage area sources. No drainage area sources were indicated for the Harrison Bayou and mid-lake sites. Arsenic, cadmium, and zinc concentrations were highest at the Carter Lake site. No relation between the relatively higher trace element concentrations and any potential source of contamination in the Carter Lake drainage area (for example, oil and gas operations, a road, a boat ramp) is indicated.

Effects of urbanization and long-term rainfall on the occurrence of organic compounds and trace elements in reservoir sediment cores, streambed sediment, and fish tissue from the Santa Ana River basin, California, 1998

USGS Publications Warehouse

Burton, Carmen A.

2002-01-01

Organcochlorine compounds, semivolatile-organic compounds (SVOC), and trace elements were analyzed in reservoir sediment cores, streambed sediment, and fish tissue in the Santa Ana River Basin as part of the U.S. Geological Survey's National Water-Quality Assessment Program. Three reservoirs were sampled in areas that have different degrees of urbanization. Streambed sediment and fish tissue collected at 12 sites were divided into two groups, urban and nonurban. More organochlorine compounds were detected in reservoir sediment cores, streambed sediment and fish tissue, and at higher concentrations at urban sites than at nonurban sites. At all sites, except West Street Basin, concentrations of organochlorine compounds were lower than the probable-effect concentration (PEC). At the highly urbanized West Street Basin, chlordane and p,p'-DDE exceeded the PEC throughout the historical record. The less stringent threshold-effect concentration (TEC) was exceeded for six compounds at eight sites. Most of the organochlorine compounds detected in streambed sediment and fish tissue were at urban sites on the Santa Ana River as opposed to its tributaries, suggesting accumulation and persistence in the river. More SVOCs were detected in reservoir sediment cores and streambed sediment, and at higher concentrations, at urban sites than at nonurban sites. At all the sites, except West Street Basin, concentrations of SVOCs were lower than the PEC. At West Street Basin, chrysene, pyrene, and total polycyclic-aromatic hydrocarbons exceeded the PEC throughout the historical record. The TEC was exceeded for 10 compounds at 3 sites. Most of the SVOCs were detected in streambed sediment at urban sites on tributaries to the Santa Ana River rather than the mainstem itself. The less frequent occurrence and lower concentrations in the Santa Ana River suggest that SVOCs are less persistent than organochlorine compounds, possibly as a result of volatization, gradation, or dilution. Most trace-element detections in reservoir sediment cores and streambed sediment were at urban sites, and the concentrations were generally higher than at nonurban sites. Lead and zinc exceeded their PECs at West Street Basin throughout the historical record; copper exceeded its PEC at Canyon Lake, an area of urban growth. The TEC was exceeded for 10 compounds at 11 sites. Frequency of detection and concentration did not differ between tributary and Santa Ana River sites, which may be attributed to the fact that trace elements occur naturally. Four trace elements (arsenic, copper, mercury, and selenium) had higher concentrations in fish tissue at nonurban sites than at urban sites. Concentrations decreased over time for organochlorine compounds at all three reservoirs, probably a result of the discontinued use of many of the compounds. Decreasing trends in SVOCs and trace elements were observed at West Street Basin, but increasing trends were observed at Canyon Lake. Concentrations of organochlorine compounds, SVOCs, and trace elements were higher during periods of above average rainfall at both West Street Basin and Canyon Lake.

Chemical data and lead isotopic compositions of geochemical baseline samples from streambed sediments and smelter slag, lead isotopic compositions in fluvial tailings, and dendrochronology results from the Boulder River watershed, Jefferson County, Montana

USGS Publications Warehouse

Unruh, Daniel M.; Fey, David L.; Church, Stan E.

2000-01-01

IntroductionAs a part of the U.S. Geological Survey Abandoned Mine Lands Initiative, metal-mining related wastes in the Boulder River study area in northern Jefferson County, Montana, have been evaluated for their environmental effects. The study area includes a 24-km segment of the Boulder River in and around Basin, Montana and three principal tributaries to the Boulder River: Basin Creek, Cataract Creek, and High Ore Creek. Mine and prospect waste dumps and mill wastes are located throughout the drainage basins of these tributaries and in the Boulder River. Mine-waste material has been transported into and down streams, where it has mixed with and become incorporated into the streambed sediments. In some localities, mine waste material was placed directly in stream channels and was transported downstream forming fluvial tailings deposits along the stream banks. Water quality and aquatic habitat have been affected by trace-element-contaminated sediment that moves from mine wastes into and down streams during snowmelt and storm runoff events within the Boulder River watershed.Present-day trace element concentrations in the streambed sediments and fluvial tailings have been extensively studied. However, in order to accurately evaluate the impact of mining on the stream environments, it is also necessary to evaluate the pre-mining trace-element concentrations in the streambed sediments. Three types of samples have been collected for estimation of pre-mining concentrations: 1) streambed sediment samples from the Boulder River and its tributaries located upstream from historical mining activity, 2) stream terrace deposits located both upstream and downstream of the major tributaries along the Boulder River, and 3) cores through sediment in overbank deposits, in abandoned stream channels, or beneath fluvial tailings deposits. In this report, we present geochemical data for six stream-terrace samples and twelve sediment-core samples and lead isotopic data for six terrace and thirteen core samples. Sample localities are in table 1 and figures 1 and 2, and site and sample descriptions are in table 2.Geochemical data have been presented for cores through fluvial tailings on High Ore Creek, on upper Basin Creek, and on Jack Creek and Uncle Sam Gulch. Geochemical and lead isotopic data for modern streambed-sediment samples have been presented by Fey and others.Lead isotopic determinations in bed sediments have been shown to be an effective tool for evaluating the contributions from various sources to the metals in bed sediments. However, in order to make these calculations, the lead isotopic compositions of the contaminant sources must also be known. Consequently, we have determined the lead isotopic compositions of five streambed-sediment samples heavily contaminated with fluvial mine waste immediately downstream from large mines in the Boulder River watershed in order to determine the lead isotopic signatures of the contaminants. Summary geochemical data for the contaminants are presented here and geochemical data for the streambed-sediment samples are given by Fey and others.Downstream from the Katie mill site and Jib tailings, fluvial deposits of mill tailings are present on a 10-m by 50-m bar in the Boulder River below the confluence with Basin Creek. The source of these tailings is not known, but fluvial tailings are also present immediately downstream from the Katie mill site, which is immediately upstream from the confluence with Basin Creek. Nine cores of fluvial tailings from this bar were analyzed.Dendrochronology samples were taken at several stream terrace localities to provide age control on the stream terrace deposits. Trees growing on the surfaces of stream terraces provide a minimum age for the terrace deposits, although floods subsequent to the trees' growth could have deposited post-mining overbank deposits around the trees. Historical data were also used to provide estimates of minimum ages of cultural features and to bracket the age of events.

Spatial variability of shelf sediments in the STRATAFORM natural laboratory, Northern California

USGS Publications Warehouse

Goff, J.A.; Wheatcroft, R.A.; Lee, H.; Drake, D.E.; Swift, D.J.P.; Fan, S.

2002-01-01

The "Correlation Length Experiment", an intensive box coring effort on the Eel River shelf (Northern California) in the summer of 1997, endeavored to characterize the lateral variability of near-surface shelf sediments over scales of meters to kilometers. Coring focused on two sites, K60 and S60, separated by ??? 15 km along the 60 m isobath. The sites are near the sand-to-mud transition, although K60 is sandier owing to its proximity to the Eel River mouth. Nearly 140 cores were collected on dip and strike lines with core intervals from < 10m to 1 km. Measurements on each core included bulk density computed from gamma-ray attenuation, porosity converted from resistivity measurements, and surficial grain size. Grain size was also measured over the full depth range within a select subset of cores. X-radiograph images were also examined. Semi-variograms were computed for strike, dip, and down-hole directions at each site. The sand-to-mud transition exerts a strong influence on all measurements: on average, bulk density increases and porosity decreases with regional increases in mean grain size. Analysis of bulk density measurements indicates very strong contrasts in the sediment variability at K60 and S60. No coherent bedding is seen at K60; in the strike direction, horizontal variability is "white" (fully uncorrelated) from the smallest scales examined (a few meters) to the largest (8 km), with a variance equal to that seen within the cores. In contrast, coherent bedding exists at S60 related to the preservation of the 1995 flood deposit. A correlatable structure is found in the strike direction with a decorrelation distance of ??? 800 m, and can be related to long-wavelength undulations in the topography and/or thickness of the flood layer or overburden. We hypothesize that the high degree of bulk density variability at K60 is a result of more intense physical reworking of the seabed in the sandier environment. Without significant averaging, the resistivity-based porosity measurements are only marginally correlated to gamma-ray-bulk density measurements, and are largely independent of mean grain size. Furthermore, porosity displays a high degree of incoherent variability at both sites. Porosity, with a much smaller sample volume than bulk density, may therefore resolve small-scale biogenic variability which is filtered out in the bulk density measurement. ?? 2002 Elsevier Science Ltd. All rights reserved.

Using Macrofossils to Reconstruct Paleoenvironmental History of Cedar Swamp, High Point NJ

NASA Astrophysics Data System (ADS)

Buhler, K. M.; Peteet, D. M.

2016-12-01

Macrofossils from deep sediment cores taken from bog environments can reveal much about the paleoclimate of a certain site. A research study conducted by Niering in 1953 focused on the pollen records from Cedar Bog that, although are able to indicate which species were present regionally, are not able to establish the specific local vegetation of the site. By identifying and counting macrofossils from the core, we can determine the species growing in Cedar Bog in High Point State Park, NJ and utilize that data to reconstruct a paleoclimatic history at the highest elevation in New Jersey. We took a 6.5m core from Cedar Bog and, from that, used 4cm³ samples taken throughout the entire depth to wash through a 250um sieve and sift through at 60x magnification, identifying the macrofossils using an extensive Lamont Doherty Earth Observatory reference collection. Additionally, we tested for the percentage of organic matter through the core using loss on ignition. We found 5 zones throughout the core depth that indicate altering habitats. Beginning with low organic matter, less than 5%, the deepest part of the core has little vegetation but high rock content. The next zone introduced Chamaecyparis thyoides in the region and a period of changing organic matter. Following this comes a domination of aquatic plants and byrozoan statoblast and, afterwards, a shift towards sedges. The top of the core shows present day vegetation types from Cedar Bog, such as sphagnum moss and Tsuga canadensis, and 96% organic matter content. The lack of vegetation and high rock content, around 6.5m deep, signal erosion that took place after deglaciation. The vegetation types in zone 2 indicate deep lake/open landscape conditions. High aquatic vegetation and bryozoan statoblasts suggest a shallow lake. The site filled in to become a fen wetland as evidenced by the abundance of Scirpus and Cladium. The final zone signifies a bog habitat represented by the domination of sphagnum and Chamaedaphne. These shifts signal an altering landscape of Cedar Bog, evolving after deglaciation from a deep lake to a shallow lake, followed by a fen wetland and eventually into a modern bog habitat. Certain vegetation and organism data indicate climatic shifts at Cedar Bog that can uncover the paleoclimate for a site located at the highest elevation in New Jersey.

Pollution from the 2014-15 Bárðarbunga eruption monitored by snow cores from the Vatnajökull glacier, Iceland

NASA Astrophysics Data System (ADS)

Galeczka, Iwona; Eiriksdottir, Eydis Salome; Pálsson, Finnur; Oelkers, Eric; Lutz, Stefanie; Benning, Liane G.; Stefánsson, Andri; Kjartansdóttir, Ríkey; Gunnarsson-Robin, Jóhann; Ono, Shuhei; Ólafsdóttir, Rósa; Jónasdóttir, Elín Björk; Gislason, Sigurdur R.

2017-11-01

The chemical composition of Icelandic rain and snow is dominated by marine aerosols, however human and volcanic activity can also affect these compositions. The six month long 2014-15 Bárðarbunga volcanic eruption was the largest in Iceland for more than 200 years and it released into the atmosphere an average of 60 kt/day SO2, 30 kt/day CO2, 500 t/day HCl and 280 t/day HF. To study the effect of this eruption on the winter precipitation, snow cores were collected from the Vatnajökull glacier and the highlands northeast of the glacier. In addition to 29 bulk snow cores from that precipitated from September 2014 until March 2015, two cores were sampled in 21 and 44 increments to quantify the spatial and time evolution of the chemical composition of the snow. The pH and chemical compositions of melted snow samples indicate that snow has been affected by the volcanic gases emitted during the Bárðarbunga eruption. The pH of the melted bulk snow cores ranged from 4.41 to 5.64 with an average value of 5.01. This is four times greater H+ activity than pure water saturated with the atmospheric CO2. The highest concentrations of volatiles in the snow cores were found close to the eruption site as predicted from CALPUFF SO2 gas dispersion quality model. The anion concentrations (SO4, Cl, and F) were higher and the pH was lower compared to equivalent snow samples collected during 1997-2006 from the unpolluted Icelandic Langjökull glacier. Higher SO4 and Cl concentrations in the snow compared with the unpolluted rainwater of marine origin confirm the addition of a non-seawater SO4 and Cl. The δ34S isotopic composition confirms that the sulphur addition is of volcanic aerosol origin. The chemical evolution of the snow with depth reflects changes in the lava effusion and gas emission rates. Those rates were the highest at the early stage of the eruption. Snow that fell during that time, represented by samples from the deepest part of the snow cores, had the lowest pH and highest concentrations of SO4, F, Cl and metals, compared with snow that fell later in the winter. Also the Al concentration, did exceed World Health Organisation drinking water standard of 3.7 μmol/kg in the lower part of the snow core closest to the eruption site. Collected snow represents the precipitation that fell during the eruption period. Nevertheless, only minor environmental impacts are evident in the snow due to its interaction with the volcanic aerosol gases. In addition, the microbial communities identified in the snow that fell during the eruption were similar to those found in snow from other parts of the Arctic, confirming an insignificant impact of this eruption on the snow microecology.

Impact of erosion and accretion on the distribution of enterococci in beach sands.

PubMed

Gast, Rebecca J; Gorrell, Levi; Raubenheimer, Britt; Elgar, Steve

2011-09-15

Bacterial pathogens in coastal sediments may pose a health risk to users of beaches. Although recent work shows that beach sands harbor both indicator bacteria and potential pathogens, it is not known how deep within beach sands the organisms may persist nor if they may be exposed during natural physical processes. In this study, sand cores of approximately 1 m depth were collected at three sites across the beach face in Kitty Hawk, North Carolina before, during and after large waves from an offshore hurricane. The presence of DNA from the fecal indicator bacterium Enterococci was detected in subsamples at different depths within the cores by PCR amplification. Erosion and accretion of beach sand at the three sites also was determined for each sampling day. The results indicate that ocean beach sands with persisting enterococci signals could be exposed and redistributed when wind, waves, and currents cause beach erosion or accretion.

Interstitial water studies on small core samples, Deep Sea Drilling Project: Leg 10

USGS Publications Warehouse

Manheim, Frank T.; Sayles, Fred L.; Waterman, Lee S.

1973-01-01

Leg 10 interstitial water analyses provide new indications of the distribution of rock salt beneath the floor of the Gulf of Mexico, both confirming areas previously indicated to be underlain by salt bodies and extending evidence of salt distribution to seismically featureless areas in the Sigsbee Knolls trend and Isthmian Embayment. The criterion for presence of salt at depth is a consistent increase in interstitial salinity and chlorinity with depth. Site 86, on the northern margin of the Yucatan Platform, provided no evidence of salt at depth. Thus, our data tend to rule out the suggestion of Antoine and Bryant (1969) that the Sigsbee Knolls salt was squeezed out from beneath the Yucatan Scarp. Cores from Sites 90 and 91, in the central Sigsbee Deep, were not obtained from a great enough depth to yield definite evidence for the presence of buried salt.

Small-scale spatial variation in near-surface turbidites around the JFAST site near the Japan Trench

NASA Astrophysics Data System (ADS)

Yoshikawa, Shuro; Kanamatsu, Toshiya; Kasaya, Takafumi

2016-03-01

This paper aims to improve our understanding of the depositional processes associated with turbidites related to recent earthquake events. A series of short sediment cores (ca. 20-30 cm long) were recovered from the landward slope of the Japan Trench around JFAST (Japan Trench Fast Drilling Project) site C0019 by a remotely operated vehicle, KAIKO 7000 II, and the sample sites were accurately located using an LBL (long base line) acoustic navigation system. The properties of the cores were analyzed using visual observations, soft X-ray radiographs, smear slides, measurement of anisotropy of magnetic susceptibility, and analysis of radioactive elements (134Cs, 137Cs, and excess 210Pb). For the first time, small-scale (ca. 200-1000 m) spatial variations in recent earthquake-triggered deep-sea turbidites, the formation of which was probably linked to the 2011 Tohoku-oki earthquake, are described. We also examine the submarine landslide that probably generated the sediment unit below the turbidites, which is thought to be an important process in the study area. The spatial distribution and characteristics of the near-surface seismoturbidite obtained immediately after the earthquake, presented here, will enable precise calibration of offshore evidence of recent earthquakes, and thus facilitate the use of the sedimentary archive for paleoseismic interpretations. Furthermore, although sampling for turbidite seismology on steep slopes has not been widely performed previously, our results suggest that the recent event deposits may be continuously tracked from the slope to the basin using a combination of the present sampling method and conventional large-scale investigation techniques.

The Preservation and Recycling of Snow Pack Nitrate at the West Antarctic Ice Sheet (WAIS) Divide Ice Core Site from the Present Day to the Last Glacial Period.

NASA Astrophysics Data System (ADS)

Robinson, J. W.; Buffen, A.; Hastings, M. G.; Schauer, A. J.; Moore, L.; Isaacs, A.; Geng, L.; Savarino, J. P.; Alexander, B.

2017-12-01

We use observations of the nitrogen isotopic composition of nitrate (δ15N(NO3-)) from snow and ice collected at the West Antarctic ice sheet (WAIS) divide ice core site to quantify the preservation and recycling of snow nitrate. Ice-core samples cover a continuous section from 36 to 52 thousand years ago and discrete samples from the Holocene, the last glacial maximum (LGM), and the glacial-Holocene transition. Higher δ15N of nitrate is consistently associated with lower temperatures with δ15N(NO3-) varying from 26 to 45 ‰ during the last glacial period and from 1 to 45 ‰ between the Holocene and glacial periods, respectively. We attribute the higher δ15N in colder periods to lower snow accumulation rates which lead to greater loss of snow nitrate via photolysis before burial beneath the snow photic zone. Modeling of nitrate preservation in snow pack was performed for modern and LGM conditions. The model is used in conjunction with observations to estimate the fraction of snow nitrate that is photolyzed, re-oxidized, and re-deposited over WAIS divide versus the fraction of primary nitrate that is deposited via long range transport. We used these estimates of fractional loss of snow nitrate in different time periods to determine the variation in the deposition flux of primary nitrate at WAIS divide with climate. Our findings have implications for the climate sensitivity of the oxidizing capacity of the polar atmosphere and the interpretation of ice-core records of nitrate in terms of past atmospheric composition.

Structure changes of human brain gray matter neurons and astrocytes in acute local ischemic injury.

PubMed

Sergeeva, S P; Shishkina, L V; Litvitskiy, P F; Breslavich, I D; Vinogradov, E V

2016-01-01

The purpose to identify key morphological features of the Astrocytes and Neurons in the acute local cerebral ischemia human cortex. Left middle cerebral artery ischemic stroke died persons (n = 9) brain tissue samples from 3 zones: 1st - contiguous to the tissue necrotic damage site zone, 2nd - 5-10 cm distant from the previous one, 3rd - the damage site symmetrical zone of the contralateral hemisphere. For GFAP, MAP-2, NSE, p53 detection indirect immunoperoxidase immunohistochemical staining method has been used. Also, the samples were Nissl and Hematoxylin-Eosin stained. The most pronounced changes in the quantity and morphological structure of astrocytes and neurons are found in directly adjacent to the necrotic core region of theleft middle cerebral artery ischemic stroke brain. This indicates the prevalence of the inflammation processes around the area of nerve tissueischemic destruction. Morphological changes of neurons and astrocytes, apoptosis, enhanced neuron-astrocyte interaction found in the area bordering on necrotic core (5-10 cm from it), as well as ischemic hearth symmetrical sites of the contralateral hemisphere. This interaction is essential for the neuroplasticityrealization in the local ischemic brain injury. The results obtained were shown the nerve tissue morphological characteristics changes occur in local cerebral cortex ischemic injury not only in the lesion, but also in the contralateral hemisphere. These changes are probably related to the implementation of neuroplasticity.

Kinetic analysis of bypass of abasic site by the catalytic core of yeast DNA polymerase eta.

PubMed

Yang, Juntang; Wang, Rong; Liu, Binyan; Xue, Qizhen; Zhong, Mengyu; Zeng, Hao; Zhang, Huidong

2015-09-01

Abasic sites (Apurinic/apyrimidinic (AP) sites), produced ∼ 50,000 times/cell/day, are very blocking and miscoding. To better understand miscoding mechanisms of abasic site for yeast DNA polymerase η, pre-steady-state nucleotide incorporation and LC-MS/MS sequence analysis of extension product were studied using pol η(core) (catalytic core, residues 1-513), which can completely eliminate the potential effects of the C-terminal C2H2 motif of pol η on dNTP incorporation. The extension beyond the abasic site was very inefficient. Compared with incorporation of dCTP opposite G, the incorporation efficiencies opposite abasic site were greatly reduced according to the order of dGTP > dATP > dCTP and dTTP. Pol η(core) showed no fast burst phase for any incorporation opposite G or abasic site, suggesting that the catalytic step is not faster than the dissociation of polymerase from DNA. LC-MS/MS sequence analysis of extension products showed that 53% products were dGTP misincorporation, 33% were dATP and 14% were -1 frameshift, indicating that Pol η(core) bypasses abasic site by a combined G-rule, A-rule and -1 frameshift deletions. Compared with full-length pol η, pol η(core) relatively reduced the efficiency of incorporation of dCTP opposite G, increased the efficiencies of dNTP incorporation opposite abasic site and the exclusive incorporation of dGTP opposite abasic site, but inhibited the extension beyond abasic site, and increased the priority in extension of A: abasic site relative to G: abasic site. This study provides further understanding in the mutation mechanism of abasic sites for yeast DNA polymerase η. Copyright © 2015 Elsevier B.V. All rights reserved.

Data from a Thick Unsaturated Zone Underlying Two Artificial Recharge Sites along Oro Grande Wash in the Western Part of the Mojave Desert, near Victorville, San Bernardino County, California, 2001-2006

USGS Publications Warehouse

Clark, Dennis A.; Izbicki, John A.; Johnson, Russell D.; Land, Michael

2009-01-01

This report presents data on the physical and hydraulic properties of unsaturated alluvial deposits and on the chemical and isotopic composition of water collected at two recharge sites in the western part of the Mojave Desert, near Victorville, California, from 2001 to 2006. Unsaturated-zone monitoring sites were installed adjacent to the two recharge ponds using the ODEX air-hammer and air rotary method to depths of about 460 feet and 269 feet below land surface. Each of the two unsaturated-zone monitoring sites included a water-table well, matric-potential sensors, and suction-cup lysimeters installed in a single bore hole. Drilling procedures, lithologic and geophysical data, and site construction and instrumentation are described. Core material was analyzed for water content, bulk density, water potential, particle size, and water retention. The chemical composition of leachate from almost 400 samples of cores and cuttings was determined. Water from suction-cup lysimeters also was analyzed for chemical and isotopic composition. In addition, data on the chemical and isotopic composition of groundwater from the two water-table wells are reported along with chemical and isotopic composition of the surface water in the recharge ponds.

PNNL Researchers Collect Permafrost Cores in Alaska

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

2016-11-23

Permafrost is ground that is frozen for two or more years. In the Arctic, discontinuous regions of this saturated admixture of soil and rock store a large fraction of the Earth’s carbon – about 1672 petagrams (1672 trillion kilograms). As temperatures increase in the Northern Hemisphere, a lot of that carbon may be released to the atmosphere, making permafrost an important factor to represent accurately in global climate models. At Pacific Northwest National Laboratory, a group led by James C. Stegen periodically extracts permafrost core samples from a site near Fairbanks, Alaska. Back at the lab in southeastern Washington State,more » they study the cores for levels of microbial activity, carbon fluxes, hydrologic patterns, and other factors that reveal the dynamics of this consequential layer of soil and rock.« less

Energy Dissipation in Calico Hills Tuff due to Pore Collapse

NASA Astrophysics Data System (ADS)

Lockner, D. A.; Morrow, C. A.

2008-12-01

Laboratory tests indicate that the weakest portions of the Calico Hills tuff formation are at or near yield stress under in situ conditions and that the energy expended during incremental loading can be more than 90 percent irrecoverable. The Calico Hills tuff underlies the Yucca Mountain waste repository site at a depth of 400 to 500 m within the unsaturated zone. The formation is highly variable in the degree of both vitrification and zeolitization. Since 1980, a number of boreholes penetrated this formation to provide site characterization for the YM repository. In the past, standard strength measurements were conducted on core samples from the drillholes. However, a significant sampling bias occurred in that tests were preferentially conducted on highly vitrified, higher-strength samples. In fact, the most recent holes were drilled with a dry coring technique that would pulverize the weakest layers, leaving none of this material for testing. We have re-examined Calico Hills samples preserved at the YM Core Facility and selected the least vitrified examples (some cores exceeded 50 percent porosity) for mechanical testing. Three basic tests were performed: (i) hydrostatic crushing tests (to 350 MPa), (ii) standard triaxial deformation tests at constant effective confining pressure (to 70 MPa), and (iii) plane strain tests with initial conditions similar to in situ stresses. In all cases, constant pore pressure of 10 MPa was maintained using argon gas as a pore fluid and pore volume loss was monitored during deformation. The strongest samples typically failed along discrete fractures in agreement with standard Mohr-Coulomb failure. The weaker, high porosity samples, however, would fail by pure pore collapse or by a combined shear-induced compaction mechanism similar to failure mechanisms described for porous sandstones and carbonates. In the plane-strain experiments, energy dissipation due to pore collapse was determined for eventual input into dynamic wave calculations. These calculations will simulate ground accelerations at the YM repository due to propagation of high-amplitude compressional waves generated by scenario earthquakes. As an example, in one typical test on a sample with 43 percent starting porosity, an axial stress increase of 25 MPa resulted from 6 percent shortening and energy dissipation (due to grain crushing and pore collapse) of approximately 1.5x106 J/m3. Under proper conditions, this dissipation mechanism could represent a significant absorption of radiated seismic energy and the possible shielding of the repository from extreme ground shaking.

A rock physics and seismic reservoir characterization study of the Rock Springs Uplift, a carbon dioxide sequestration site in Southwestern Wyoming

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grana, Dario; Verma, Sumit; Pafeng, Josiane

We present a reservoir geophysics study, including rock physics modeling and seismic inversion, of a carbon dioxide sequestration site in Southwestern Wyoming, namely the Rock Springs Uplift, and build a petrophysical model for the potential injection reservoirs for carbon dioxide sequestration. Our objectives include the facies classification and the estimation of the spatial model of porosity and permeability for two sequestration targets of interest, the Madison Limestone and the Weber Sandstone. The available dataset includes a complete set of well logs at the location of the borehole available in the area, a set of 110 core samples, and a seismicmore » survey acquired in the area around the well. The proposed study includes a formation evaluation analysis and facies classification at the well location, the calibration of a rock physics model to link petrophysical properties and elastic attributes using well log data and core samples, the elastic inversion of the pre-stack seismic data, and the estimation of the reservoir model of facies, porosity and permeability conditioned by seismic inverted elastic attributes and well log data. In particular, the rock physics relations are facies-dependent and include granular media equations for clean and shaley sandstone, and inclusion models for the dolomitized limestone. The permeability model has been computed by applying a facies-dependent porosity-permeability relation calibrated using core sample measurements. Finally, the study shows that both formations show good storage capabilities. The Madison Limestone includes a homogeneous layer of high-porosity high-permeability dolomite; the Weber Sandstone is characterized by a lower average porosity but the layer is thicker than the Madison Limestone.« less

A rock physics and seismic reservoir characterization study of the Rock Springs Uplift, a carbon dioxide sequestration site in Southwestern Wyoming

DOE PAGES

Grana, Dario; Verma, Sumit; Pafeng, Josiane; ...

2017-06-20

We present a reservoir geophysics study, including rock physics modeling and seismic inversion, of a carbon dioxide sequestration site in Southwestern Wyoming, namely the Rock Springs Uplift, and build a petrophysical model for the potential injection reservoirs for carbon dioxide sequestration. Our objectives include the facies classification and the estimation of the spatial model of porosity and permeability for two sequestration targets of interest, the Madison Limestone and the Weber Sandstone. The available dataset includes a complete set of well logs at the location of the borehole available in the area, a set of 110 core samples, and a seismicmore » survey acquired in the area around the well. The proposed study includes a formation evaluation analysis and facies classification at the well location, the calibration of a rock physics model to link petrophysical properties and elastic attributes using well log data and core samples, the elastic inversion of the pre-stack seismic data, and the estimation of the reservoir model of facies, porosity and permeability conditioned by seismic inverted elastic attributes and well log data. In particular, the rock physics relations are facies-dependent and include granular media equations for clean and shaley sandstone, and inclusion models for the dolomitized limestone. The permeability model has been computed by applying a facies-dependent porosity-permeability relation calibrated using core sample measurements. Finally, the study shows that both formations show good storage capabilities. The Madison Limestone includes a homogeneous layer of high-porosity high-permeability dolomite; the Weber Sandstone is characterized by a lower average porosity but the layer is thicker than the Madison Limestone.« less

Unraveling the Fate and Transport of SrEDTA-2 and Sr+2 in Hanford Sediments

NASA Astrophysics Data System (ADS)

Pace, M. N.; Mayes, M. A.; Jardine, P. M.; Mehlhorn, T. L.; Liu, Q. G.; Yin, X. L.

2004-12-01

Accelerated migration of strontium-90 has been observed in the vadose zone beneath the Hanford tank farm. The goal of this paper is to provide an improved understanding of the hydrogeochemical processes that contribute to strontium transport in the far-field Hanford vadose zone. Laboratory scale batch, saturated packed column experiments, and an unsaturated transport experiment in an undisturbed core were conducted to quantify geochemical and hydrological processes controlling Sr+2 and SrEDTA-2 sorption to Hanford flood deposits. After experimentation, the undisturbed core was disassembled and samples were collected from different bedding units as a function of depth. Sequential extractions were then performed on the samples. It has been suggested that organic chelates such as EDTA may be responsible for the accelerated transport of strontium due to the formation of stable anionic complexes. Duplicate batch and column experiments performed with Sr+2 and SrEDTA-2 suggested that the SrEDTA-2 complex was not stable in the presence of soil and rapid dissociation allowed strontium to be transported as a divalent cation. Batch experiments indicated a decrease in sorption with increasing rock:water ratios, whereas saturated packed column experiments indicated equal retardation in columns of different lengths. This difference between the batch and column experiments is primarily due to the difference between equilibrium conditions where dissolution of cations may compete for sorption sites versus flowing conditions where any dissolved cations are flushed through the system minimizing competition for sorption sites. Unsaturated transport in the undisturbed core resulted in significant Sr+2 retardation despite the presence of physical nonequilibrium. Core disassembly and sequential extractions revealed the mass wetness distribution and reactive mineral phases associated with strontium in the core. Overall, results indicated that strontium will most likely be transported through the Hanford far-field vadose zone as a divalent cation.

Visible-Near Infrared Point Spectrometry of Drill Core Samples from Río Tinto, Spain: Results from the 2005 Mars Astrobiology Research and Technology Experiment (MARTE) Drilling Exercise

NASA Astrophysics Data System (ADS)

Sutter, Brad; Brown, Adrian J.; Stoker, Carol R.

2008-10-01

Sampling of subsurface rock may be required to detect evidence of past biological activity on Mars. The Mars Astrobiology Research and Technology Experiment (MARTE) utilized the Río Tinto region, Spain, as a Mars analog site to test dry drilling technologies specific to Mars that retrieve subsurface rock for biological analysis. This work examines the usefulness of visible-near infrared (VNIR) (450-1000 nm) point spectrometry to characterize ferric iron minerals in core material retrieved during a simulated Mars drilling mission. VNIR spectrometry can indicate the presence of aqueously precipitated ferric iron minerals and, thus, determine whether biological analysis of retrieved rock is warranted. Core spectra obtained during the mission with T1 (893-897 nm) and T2 (644-652 nm) features indicate goethite-dominated samples, while relatively lower wavelength T1 (832-880 nm) features indicate hematite. Hematite/goethite molar ratios varied from 0 to 1.4, and within the 880-898 nm range, T1 features were used to estimate hematite/goethite molar ratios. Post-mission X-ray analysis detected phyllosilicates, which indicates that examining beyond the VNIR (e.g., shortwave infrared, 1000-2500 nm) will enhance the detection of other minerals formed by aqueous processes. Despite the limited spectral range of VNIR point spectrometry utilized in the MARTE Mars drilling simulation project, ferric iron minerals could be identified in retrieved core material, and their distribution served to direct core subsampling for biological analysis.

Visible-near infrared point spectrometry of drill core samples from Río Tinto, Spain: results from the 2005 Mars Astrobiology Research and Technology Experiment (MARTE) drilling exercise.

PubMed

Sutter, Brad; Brown, Adrian J; Stoker, Carol R

2008-10-01

Sampling of subsurface rock may be required to detect evidence of past biological activity on Mars. The Mars Astrobiology Research and Technology Experiment (MARTE) utilized the Río Tinto region, Spain, as a Mars analog site to test dry drilling technologies specific to Mars that retrieve subsurface rock for biological analysis. This work examines the usefulness of visible-near infrared (VNIR) (450-1000 nm) point spectrometry to characterize ferric iron minerals in core material retrieved during a simulated Mars drilling mission. VNIR spectrometry can indicate the presence of aqueously precipitated ferric iron minerals and, thus, determine whether biological analysis of retrieved rock is warranted. Core spectra obtained during the mission with T1 (893-897 nm) and T2 (644-652 nm) features indicate goethite-dominated samples, while relatively lower wavelength T1 (832-880 nm) features indicate hematite. Hematite/goethite molar ratios varied from 0 to 1.4, and within the 880-898 nm range, T1 features were used to estimate hematite/goethite molar ratios. Post-mission X-ray analysis detected phyllosilicates, which indicates that examining beyond the VNIR (e.g., shortwave infrared, 1000-2500 nm) will enhance the detection of other minerals formed by aqueous processes. Despite the limited spectral range of VNIR point spectrometry utilized in the MARTE Mars drilling simulation project, ferric iron minerals could be identified in retrieved core material, and their distribution served to direct core subsampling for biological analysis.

Physical and hydraulic properties of volcanic rocks from Yucca Mountain, Nevada

USGS Publications Warehouse

Flint, Lorraine E.

2003-01-01

A database of physical and hydraulic properties was developed for rocks in the unsaturated zone at Yucca Mountain, Nevada, a site under consideration as a geologic repository for high-level radioactive waste. The 5320 core samples were collected from 23 shallow (<100 m) and 10 deep (500-1000 m) vertical boreholes. Hydrogeologic units have been characterized in the unsaturated zone [Flint, 1998] that represent rocks with ranges of welding, lithophysae, and high and low temperature alteration (as a result of the depositional, cooling, and alterational history of the lithostratigraphic layers). Lithostratigraphy, the hydrogeologic unit, and the corresponding properties are described. In addition, the physical properties of bulk density, porosity, and particle density; the hydraulic properties of saturated hydraulic conductivity and moisture retention characteristics; and the field water content were measured and compiled for each core sample.

Small Scale Characterization of the Presence of the Explosive Octahydro-1,3,5,7-tetranitro- 1,3,5,7 tetrazocine (HMX) Near Former Naval Sites on Vieques Island, Puerto Rico

NASA Astrophysics Data System (ADS)

Simmons, C. C.; Carvalho-Knighton, K. M.; Pyrtle, A. J.

2007-12-01

Octahydro-1,3,5,7-tetranitro-1,3,5,7 tetrazocine (HMX) is a synthetic energetic compounds that has been commonly used in military munitions. The presence and movement of HMX through the environment is of growing concern because of potential civilian exposure and impacts on human health. HMX remains in the environment unreactive with little degradation. It can be transported great distances in water thus having the possibility for migrating into groundwater. The former naval sites in Vieques were used for weapons training and housed several disposal sites. Previous studies around these sites indicate the presence of radioactive materials produced through thermal fission, such as Cs-137. Since HMX was primarily used to implode fissionable materials in nuclear devices, evaluating the release of HMX and consequent movement through the environment at these sites is essential. Surface water and soil samples as well as core and pore water samples were collected from two sites in Vieques; Kiani Lagoon and Mosquito Bay. All samples were extracted using EPA method 8330 and analyzed using RP-HPLC analysis with a C-18 column. HMX was undetected in samples collected from both Kiani Lagoon and Mosquito Bay. The development of a model that studies the flow rates and fate of water runoff in these areas of interest, coupled with data on groundwater testing inside the actual former naval facilities, is being explored for further sample collection and analysis.

Are mangroves as tough as a seawall? Flow-vegetation interaction in a living shoreline restoration

NASA Astrophysics Data System (ADS)

Kibler, K. M.; Kitsikoudis, V.; Spiering, D. W.

2017-12-01

This study aims to assess the impact of an established living shoreline restoration on near-shore hydraulics, shoreline slope, and sediment texture and organic matter content. We collected data from three 100 m shoreline sites within an estuarine lagoon in Canaveral National Seashore: one restored; one that had been stabilized by a seawall; and one in a reference condition stabilized by mature mangrove vegetation. The living shoreline site was restored five years prior with a breakwater of oyster shell bags, emergent marsh grasses (Spartina alterniflora), and mangroves (Rhizophora mangle and Avicennia germinans). We sampled water depth and incoming velocity profiles of the full water column at 2 Hz using a 2 MHz Acoustic Doppler Current Profiler (ADCP, Nortek), stationed down-looking, approximately 10 m offshore. A 2 - 3 cm velocity profile above the bed was sampled on the shoreline at 100 Hz, using a Nortek Vectrino profiler. In restored and reference sites, the onshore probe was placed within vegetation. We surveyed vegetation upstream of the probe for species and diameter at water level. Windspeed and direction were collected 2 m above the water surface. Shorelines were surveyed in transects using GPS survey equipment. Five sediment cores were collected to 20 cm depth from both onshore and offshore of each site. Individual cores were processed for loss on ignition before being pooled by site for analysis of grain size distribution. While incoming velocity profiles were similar between sites, hydraulic conditions onshore within the vegetated sites deviated from the seawall site, which was devoid of vegetation. Offshore to onshore gradients in shear stress, mean velocity, and turbulent kinetic energy differed widely between sites, despite similar wind and tidal conditions. Sediment grain sizes were finer and contained more organic matter in the restored and reference sites than in the seawall site. Profiles of the restored and seawall sites were similar, though the reference site had a more complex bathymetry. Variable hydraulic patterns observed at restored and reference sites may attribute to differences in dominant vegetation-water interactions. Interactions at the reference site were characterized by flow between mangrove prop roots while the restored site consisted mainly of Spartina leaves.

Simulated storm surge effects on freshwater coastal wetland soil porewater salinity and extractable ammonium levels: Implications for marsh recovery after storm surge

NASA Astrophysics Data System (ADS)

McKee, M.; White, J. R.; Putnam-Duhon, L. A.

2016-11-01

Coastal wetland systems experience both short-term changes in salinity, such as those caused by wind-driven tides and storm surge, and long-term shifts caused by sea level rise. Salinity increases associated with storm surge are known to have significant effects on soil porewater chemistry, but there is little research on the effect of flooding length on salt penetration depth into coastal marsh soils. A simulated storm surge was imposed on intact soil columns collected from a non-vegetated mudflat and a vegetated marsh site in the Wax Lake Delta, LA. Triplicate intact cores were continuously exposed to a 35 salinity water column (practical salinity scale) for 1, 2, and 4 weeks and destructively sampled in order to measure porewater salinity and extractable NH4sbnd N at two cm depth intervals. Salinity was significantly higher in the top 8 cm for both the marsh and mudflat cores after one week of flooding. After four weeks of flooding, salinity was significantly higher in marsh and mudflat cores compared to the control (no salinity) cores throughout the profile for both sites. Extractable ammonium levels increased significantly in the marsh cores throughout the experiment, but there was only a marginally (p < 0.1) significant increase seen in the mudflat cores. Results indicate that porewater salinity levels can become significantly elevated within a coastal marsh soil in just one week. This vertical intrusion of salt can potentially negatively impact macrophytes and associated microbial communities for significantly longer term post-storm surge.

Microbial Transport Mechanisms in Silty, Sandy Media as Inferred From Short Core Experiments Performed in the Field.

NASA Astrophysics Data System (ADS)

Mailloux, B.; Hall, j; Fuller, M.; Scheibe, T.; DeFlaun, M.; Onstott, T.

2001-12-01

A novel approach to examining the mechanisms controlling the velocity and attachment of bacteria in porous media was developed for the South Oyster Bacterial Transport Field Site. Instead of performing bacterial transport experiments in the lab using repacked materials and artificial water, samples of sediment core, 7 cm. in length, were connected to multi-level samplers at the field site, the groundwater from select levels in the aquifer was pumped through the cores, and an aliquot of cells stained with a viable, fluorescent dye was injected with Br into the influent end of the cores. The same cells, Br and groundwater were simultaneously passed through repacked cores composed of sieved sand of varying grain size fractions (100 to 600  diameter) and a single grain size fraction coated with Fe and Al synthetic oxides. The grain size of the coated sand and the Fe and Al concentrations of the coated sand (500 to 1000 ppm) were representative of the average value of the aquifer. By using this approach, the parameters that are difficult to reproduce in the lab, e.g., the dissolved gas concentrations, pH, temperature, dissolved organic matter, the indigenous bacterial and protist populations, could be replicated. One of the results derived from 29 short core experiments indicate that the enhanced velocity of adhesion deficient DA001 that has been reported in laboratory experiments was greatly reduced in the field experiments for the Fe and Al coated sands and greatly enhanced for the fine grained sands.

Magnetic properties of Co-ferrite-doped hydroxyapatite nanoparticles having a core/shell structure

NASA Astrophysics Data System (ADS)

Petchsang, N.; Pon-On, W.; Hodak, J. H.; Tang, I. M.

2009-07-01

The magnetic properties of Co-ferrite-doped hydroxyapatite (HAP) nanoparticles of composition Ca 10-3xFe 2xCo x(PO 4) 6(OH) 2 (where x=0, 0.1, 0.2, 0.3, 0.4 and 0.5% mole) are studied. Transmission electron microscope micrograms show that the 90 nm size nanoparticles annealed at 1250 °C have a core/shell structure. Their electron diffraction patterns show that the shell is composed of the hydroxyapatite and the core is composed of the Co-ferrite, CoFe 2O 4. Electron spin resonance measurements indicate that the Co 2+ ions are being substituted into the Ca(1) sites in HAP lattice. X-ray diffraction studies show the formation of impurity phases as higher amounts of the Fe 3+/Co 2+ ions which are substituted into the HAP host matrix. The presence of two sextets (one for the A-site Fe 3+ and the other for the B-site Fe 3+) in the Mössbauer spectrum for all the doped samples clearly indicates that the CoFe 2O 4.cores are in the ferromagnetic state. Evidence of the impurity phases is seen in the appearance of doublet patterns in the Mössbauer spectrums for the heavier-doped ( x=0.4 and 0.5) specimens. The decrease in the saturation magnetizations and other magnetic properties of the nanoparticles at the higher doping levels is consistent with some of the Fe 3+ and Co 2+ which being used to form the CoO and Fe 2O 3 impurity phase seen in the XRD patterns.

Central Core Laboratory versus Site Interpretation of Coronary CT Angiography: Agreement and Association with Cardiovascular Events in the PROMISE Trial.

PubMed

Lu, Michael T; Meyersohn, Nandini M; Mayrhofer, Thomas; Bittner, Daniel O; Emami, Hamed; Puchner, Stefan B; Foldyna, Borek; Mueller, Martin E; Hearne, Steven; Yang, Clifford; Achenbach, Stephan; Truong, Quynh A; Ghoshhajra, Brian B; Patel, Manesh R; Ferencik, Maros; Douglas, Pamela S; Hoffmann, Udo

2018-04-01

Purpose To assess concordance and relative prognostic utility between central core laboratory and local site interpretation for significant coronary artery disease (CAD) and cardiovascular events. Materials and Methods In the Prospective Multicenter Imaging Study for Evaluation of Chest Pain (PROMISE) trial, readers at 193 North American sites interpreted coronary computed tomographic (CT) angiography as part of the clinical evaluation of stable chest pain. Readers at a central core laboratory also interpreted CT angiography blinded to clinical data, site interpretation, and outcomes. Significant CAD was defined as stenosis greater than or equal to 50%; cardiovascular events were defined as a composite of cardiovascular death or myocardial infarction. Results In 4347 patients (51.8% women; mean age ± standard deviation, 60.4 years ± 8.2), core laboratory and site interpretations were discordant in 16% (683 of 4347), most commonly because of a finding of significant CAD by site but not by core laboratory interpretation (80%, 544 of 683). Overall, core laboratory interpretation resulted in 41% fewer patients being reported as having significant CAD (14%, 595 of 4347 vs 23%, 1000 of 4347; P < .001). Over a median follow-up period of 25 months, 1.3% (57 of 4347) sustained myocardial infarction or cardiovascular death. The C statistic for future myocardial infarction or cardiovascular death was 0.61 (95% confidence interval [CI]: 0.54, 0.68) for the core laboratory and 0.63 (95% CI: 0.56, 0.70) for the sites. Conclusion Compared with interpretation by readers at 193 North American sites, standardized core laboratory interpretation classified 41% fewer patients as having significant CAD. © RSNA, 2017 Online supplemental material is available for this article. Clinical trial registration no. NCT01174550.

Analytical Results for 42 Fluvial Tailings Cores and 7 Stream Sediment Samples from High Ore Creek, Northern Jefferson County, Montana

USGS Publications Warehouse

Fey, David L.; Church, Stan E.

1998-01-01

Metal-mining related wastes in the Boulder River basin study area in northern Jefferson County, Montana have been implicated in their detrimental effects on water quality with regard to acid-generation and toxic-metal solubility. Sediments, fluvial tailings and water from High Ore Creek have been identified as significant contributors to water quality degradation of the Boulder River below Basin, Montana. A study of 42 fluvial tailings cores and 7 stream sediments from High Ore Creek was undertaken to determine the concentrations of environmentally sensitive elements (i.e. Ag, As, Cd, Cu, Pb, Zn) present in these materials, and the mineral phases containing those elements. Two sites of fluvial deposition of mine-waste contaminated sediment on upper High Ore Creek were sampled using a one-inch soil probe. Forty-two core samples were taken producing 247 subsamples. The samples were analyzed by ICP-AES (inductively coupled-plasma atomic emission spectroscopy) using a total mixed-acid digestion. Results of the core analyses show that the elements described above are present at very high concentrations (to 22,000 ppm As, to 460 ppm Ag, to 900 ppm Cd, 4,300 ppm Cu, 46,000ppm Pb, and 50,000 ppm Zn). Seven stream-sediment samples were also analyzed by ICP-AES for total element content and for leachable element content. Results show that the sediment of High Ore Creek has elevated levels of ore-related metals throughout its length, down to the confluence with the Boulder River, and that the metals are, to a significant degree, contained in the leachable phase, namely the hydrous amorphous iron- and manganese-hydroxide coatings on detrital sediment particles.

Understanding shallow gas occurrences in the Gulf of Lions

USGS Publications Warehouse

Garcia-Garcia, Ana; Tesi, Tommaso; Orange, Daniel L.; Lorenson, T.; Miserocchi, Stefano; Langone, L.; Herbert, I.; Dougherty, J.

2007-01-01

New coring data have been acquired along the western Gulf of Lions showing anomalous concentrations of methane (up to 95,700 ppm) off the Rho??ne prodelta and the head of the southern canyons Lacaze-Duthiers and Cap de Creus. Sediment cores were acquired with box and kasten cores during 2004-2005 on several EuroSTRATAFORM cruises. Anomalous methane concentrations are discussed and integrated with organic carbon data. Sampled sites include locations where previous surveys identified acoustic anomalies in high-resolution seismic profiles, which may be related to the presence of gas. Interpretation of the collected data has enabled us to discuss the nature of shallow gas along the Gulf of Lions, and its association with recent sedimentary dynamics. The Rho??ne prodelta flood deposits deliver significant amounts of terrigenous organic matter that can be rapidly buried, effectively removing this organic matter from aerobic oxidation and biological uptake, and leading to the potential for methanogenesis with burial. Away from the flood-related sediments off the Rho??ne delta, the organic matter is being reworked and remineralized on its way along the western coast of the Gulf of Lions, with the result that the recent deposits in the canyon contain little reactive carbon. In the southernmost canyons, Lacaze-Duthiers and Cap de Creus, the gas analyses show relatively little shallow gas in the core samples. Samples with anomalous gas (up to 5,000 ppm methane) are limited to local areas where the samples also show higher amounts of organic matter. The anomalous samples at the head of the southern canyons may be related to methanogenesis of recent drape or of older sidewall canyon infills. ?? Springer-Verlag 2007.

Identification of water-quality trends using sediment cores from Dillon Reservoir, Summit County, Colorado

USGS Publications Warehouse

Greve, Adrienne I.; Spahr, Norman E.; Van Metre, Peter C.; Wilson, Jennifer T.

2001-01-01

Since the construction of Dillon Reservoir, in Summit County, Colorado, in 1963, its drainage area has been the site of rapid urban development and the continued influence of historical mining. In an effort to assess changes in water quality within the drainage area, sediment cores were collected from Dillon Reservoir in 1997. The sediment cores were analyzed for pesticides, polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs), and trace elements. Pesticides, PCBs, and PAHs were used to determine the effects of urban development, and trace elements were used to identify mining contributions. Water-quality and streambed-sediment samples, collected at the mouth of three streams that drain into Dillon Reservoir, were analyzed for trace elements. Of the 14 pesticides and 3 PCBs for which the sediment samples were analyzed, only 2 pesticides were detected. Low amounts of dichloro-diphenyldichloroethylene (DDE) and dichloro-diphenyldichloroethane (DDD), metabolites of dichlorodiphenyltrichloroethane (DDT), were found at core depths of 5 centimeters and below 15 centimeters in a core collected near the dam. The longest core, which was collected near the dam, spanned the entire sedimentation history of the reservoir. Concentrations of total combustion PAH and the ratio of fluoranthene to pyrene in the core sample decreased with core depth and increased over time. This relation is likely due to growth in residential and tourist populations in the region. Comparisons between core samples gathered in each arm of the reservoir showed the highest PAH concentrations were found in the Tenmile Creek arm, the only arm that has an urban area on its shores, the town of Frisco. All PAH concentrations, except the pyrene concentration in one segment in the core near the dam and acenaphthylene concentrations in the tops of three cores taken in the reservoir arms, were below Canadian interim freshwater sediment-quality guidelines. Concentrations of arsenic, cadmium, chromium, copper, lead, and zinc in sediment samples from Dillon Reservoir exceeded the Canadian interim freshwater sediment-quality guidelines. Copper, iron, lithium, nickel, scandium, titanium, and vanadium concentrations in sediment samples decreased over time. Other elements, while no trend was evident, displayed concentration spikes in the down-core profiles, indicating loads entering the reservoir may have been larger than they were in 1997. The highest concentrations of copper, lead, manganese, mercury, and zinc were detected during the late 1970's and early 1980's. Elevated concentrations of trace elements in sediment in Dillon Reservoir likely resulted from historical mining in the drainage area. The downward trend identified for copper, iron, lithium, nickel, scandium, titanium, and vanadium may be due in part to restoration efforts in mining-affected areas and a decrease in active mining in the Dillon Reservoir watershed. Although many trace-element core-sediment concentrations exceeded the Canadian probable effect level for freshwater lakes, under current limnological conditions, the high core-sediment concentrations do not adversely affect water quality in Dillon Reservoir. The trace-element concentrations in the reservoir water column meet the standards established by the Colorado Water Quality Control Commission. Although many trace-element core-sediment concentrations exceeded the Canadian probable effect level for freshwater lakes, under current limnological conditions, the high core-sediment concentrations do not adversely affect water quality in Dillon Reservoir. The trace-element concentrations in the reservoir water column meet the standards established by the Colorado Water Quality Control Commission.

Comparison and Correlation of Subsurface Media Properties Reflected in Both Extracted Soil Pore Water From Sectioned Cores and Homogenized Groundwater From Monitoring Wells

NASA Astrophysics Data System (ADS)

Moon, J. W.; Paradis, C. J.; von Netzer, F.; Dixon, E.; Majumder, E.; Joyner, D.; Zane, G.; Fitzgerald, K.; Xiaoxuan, G.; Thorgersen, M. P.; Lui, L.; Adams, B.; Brewer, S. S.; Williams, D.; Lowe, K. A.; Rodriguez, M., Jr.; Mehlhorn, T. L.; Pfiffner, S. M.; Chakraborty, R.; Arkin, A. P.; Terry, A. Y.; Wall, J. D.; Stahl, D. A.; Elias, D. A.; Hazen, T. C.

2017-12-01

Conventional monitoring wells have produced useful long-term data about the contaminants, carbon flux, microbial population and their evolution. The averaged homogenized groundwater matrix from these wells is insufficient to represent all media properties in subsurface. This pilot study investigated the solid, liquid and gas phases from soil core samples from both uncontaminated and contaminated areas of the ENIGMA field research site at Oak Ridge, Tennessee. We focused on a site-specific assessment with depth perspective that included soil structure, soil minerals, major and trace elements and biomass for the solid phase; centrifuged soil pore water including cations, anions, organic acid, pH and conductivity for the liquid phase; and gas (CO2, CH4, N2O) evolution over a 4 week incubation with soil and unfiltered groundwater. Pore water from soil core sections showed a correlation between contamination levels with depth and the potential abundance of sulfate- and nitrate-reducing bacteria based on the 2-order of magnitude decreased concentration. A merged interpretation with mineralogical consideration revealed a more complicated correlation among contaminants, soil texture, clay minerals, groundwater levels, and biomass. This sampling campaign emphasized that subsurface microbial activity and metabolic reactions can be influenced by a variety of factors but can be understood by considering the influence of multiple geochemical factors from all subsurface phases including water, air, and solid along depth rather than homogenized groundwater.

Quaternary radiolarian biostratigraphy in the subarctic northeastern Pacific (IODP Expedition 341 Site U1417) and synchroneity of bioevents across the North Pacific

NASA Astrophysics Data System (ADS)

Matsuzaki, Kenji M.; Suzuki, Noritoshi

2018-01-01

Expedition 341 of the Integrated Ocean Drilling Program (IODP) retrieved sediment cores spanning the time interval between the Pleistocene and Miocene from the southern Gulf of Alaska. Onboard Pleistocene radiolarian biostratigraphy is hereby refined by increasing the sampling resolution. The 178 core samples from the upper 190 m CCSF-B (Composite Core Depth Scale F-B) of Site U1417 contained faunal elements similar to the northwestern Pacific; for example, the three biozones in the northwestern Pacific (i.e., Eucyrtidium matuyamai, Stylatractus universus and Botryostrobus aquilonaris) were also recognized in the Gulf of Alaska, spanning 1.80-1.13 Ma, 1.13-0.45 Ma, and the last 0.45 Myr, respectively. Based on the age model that we used in this study and the shipboard paleomagnetic reversal events, the first occurrences (FOs) of Amphimelissa setosa and Schizodiscus japonicus in the northeastern Pacific were preliminarily determined to be 1.48 and 1.30 Ma, respectively. The last occurrence (LO) of Eucyrtidium matuyamai and the FO of Lychnocanoma sakaii, both well-established bioevents in the northwestern Pacific, were dated at 0.80 and 1.13 Ma, respectively. The LO of E. matuyamai is a synchronous event at 1.05 ± 0.1 Ma in the North Pacific, while the FOs of A. setosa and S. japonicus at 1.48 and 1.30 Ma, respectively, are significantly older than what has been found elsewhere.

Seismic imaging and velocity structure around the JFAST drill site in the Japan Trench: low Vp, high Vp/ Vs in the transparent frontal prism

NASA Astrophysics Data System (ADS)

Nakamura, Yasuyuki; Kodaira, Shuichi; Cook, Becky J.; Jeppson, Tamara; Kasaya, Takafumi; Yamamoto, Yojiro; Hashimoto, Yoshitaka; Yamaguchi, Mika; Obana, Koichiro; Fujie, Gou

2014-12-01

Seismic image and velocity models were obtained from a newly conducted seismic survey around the Integrated Ocean Drilling Program (IODP) Japan Trench Fast Drilling Project (JFAST) drill site in the Japan Trench. Pre-stack depth migration (PSDM) analysis was applied to the multichannel seismic reflection data to produce an accurate depth seismic profile together with a P wave velocity model along a line that crosses the JFAST site location. The seismic profile images the subduction zone at a regional scale. The frontal prism where the drill site is located corresponds to a typically seismically transparent (or chaotic) zone with several landward-dipping semi-continuous reflections. The boundary between the Cretaceous backstop and the frontal prism is marked by a prominent landward-dipping reflection. The P wave velocity model derived from the PSDM analysis shows low velocity in the frontal prism and velocity reversal across the backstop interface. The PSDM velocity model around the drill site is similar to the P wave velocity model calculated from the ocean bottom seismograph (OBS) data and agrees with the P wave velocities measured from the core experiments. The average Vp/ Vs in the hanging wall sediments around the drill site, as derived from OBS data, is significantly larger than that obtained from core sample measurements.

Effects of rare earth doping on multi-core iron oxide nanoparticles properties

NASA Astrophysics Data System (ADS)

Petran, Anca; Radu, Teodora; Borodi, Gheorghe; Nan, Alexandrina; Suciu, Maria; Turcu, Rodica

2018-01-01

New multi-core iron oxide magnetic nanoparticles doped with rare earth metals (Gd, Eu) were obtained by a one step synthesis procedure using a solvothermal method for potential biomedical applications. The obtained clusters were characterized by X-ray diffraction (XRD), transmission electron microscopy (TEM), energy-dispersive X-ray microanalysis (EDX), X-ray photoelectron spectroscopy (XPS) and magnetization measurements. They possess high colloidal stability, a saturation magnetization of up to 52 emu/g, and nearly spherical shape. The presence of rare earth ions in the obtained samples was confirmed by EDX and XPS. XRD analysis proved the homogeneous distribution of the trivalent rare earth ions in the inverse-spinel structure of magnetite and the increase of crystal strain upon doping the samples. XPS study reveals the valence state and the cation distribution on the octahedral and tetrahedral sites of the analysed samples. The observed shift of the XPS valence band spectra maximum in the direction of higher binding energies after rare earth doping, as well as theoretical valence band calculations prove the presence of Gd and Eu ions in octahedral sites. The blood protein adsorption ability of the obtained samples surface, the most important factor of the interaction between biomaterials and body fluids, was assessed by interaction with bovine serum albumin (BSA). The rare earth doped clusters surface show higher afinity for binding BSA. In vitro cytotoxicity test results for the studied samples showed no cytotoxicity in low and medium doses, establishing a potential perspective for rare earth doped MNC to facilitate multiple therapies in a single formulation for cancer theranostics.

Lithologic and ground-water-quality data collected using Hoverprobe drilling techniques at the West Branch Canal Creek wetland, Aberdeen Proving Ground, Maryland, April-May 2000

USGS Publications Warehouse

Phelan, Daniel J.; Senus, Michael P.; Olsen, Lisa D.

2001-01-01

This report presents lithologic and groundwater- quality data collected during April and May 2000 in the remote areas of the tidal wetland of West Branch Canal Creek, Aberdeen Proving Ground, Maryland. Contamination of the Canal Creek aquifer with volatile organic compounds has been documented in previous investigations of the area. This study was conducted to investigate areas that were previously inaccessible because of deep mud and shallow water, and to support ongoing investigations of the fate and transport of volatile organic compounds in the Canal Creek aquifer. A unique vibracore drill rig mounted on a hovercraft was used for drilling and groundwater sampling. Continuous cores of the wetland sediment and of the Canal Creek aquifer were collected at five sites. Attempts to sample ground water were made by use of a continuous profiler at 12 sites, without well installation, at a total of 81 depths within the aquifer. Of those 81 attempts, only 34 sampling depths produced enough water to collect samples. Ground-water samples from two sites had the highest concentrations of volatile organic compounds?with total volatile organic compound concentrations in the upper part of the aquifer ranging from about 15,000 to 50,000 micrograms per liter. Ground-water samples from five sites had much lower total volatile organic compound concentrations (95 to 2,100 micrograms per liter), whereas two sites were essentially not contaminated, with total volatile organic compound concentrations less than or equal to 5 micrograms per liter.

Impacts of Mesopotamian wetland re-flooding on the lipid biomarker distributions in sediments

NASA Astrophysics Data System (ADS)

Rushdi, Ahmed I.; DouAbul, Ali A. Z.; Al-Maarofi, Sama S.; Simoneit, Bernd R. T.

2018-03-01

Shallow sediment core samples from two locales in the Mesopotamian marshlands of Iraq were analyzed to characterize the extractable organic (lipid) compounds, and their sources and distributions after hydrological restoration by re-flooding of the marshes. Dried samples were extracted with a dichloromethane/methanol mixture before analysis by gas chromatography-mass spectrometry (GC-MS). The major compounds were n-alkanes, fatty acids and alcohols, steroids, terpenoids, hopanes, steranes, unresolved complex mixture (UCM), and plasticizers. The lipid compounds in Kurmashia (Al-Hammar marshes) were generally higher in concentration than in Abu Zirig (Central marshes), and decreased with core depths for both sites. This concentration decrease with core depth is attributed to transformation, biodegradation and variable input processes. The distribution patterns of the lipids in the sediment cores indicated that the Abu Zirig area was drier than Kurmashia before the re-flooding process. Furthermore, the concentration of the compounds in the surface sediment the Abu Zirig core was as high and similar to that in Kurmashia, reflecting the re-flooding impacts on the marsh and the revival of the wetland. The major sources of these lipids were from natural terrestrial vegetation (35-66% for Abu Zirig; 40-49% for Kurmashia), microbial (plankton) residues and bacteria (27-52% for Abu Zirig; 39-43% for Kurmashia), with a minor contribution from anthropogenic sources including plastic wastes and petroleum (6-13% for Abu Zirig; 9-18% for Kurmashia).

Late Quaternary sediment-accumulation rates within the inner basins of the California Continental Borderland in support of geologic hazard evaluation

USGS Publications Warehouse

Normark, W.R.; McGann, M.; Sliter, R.W.

2009-01-01

An evaluation of the geologic hazards of the inner California Borderland requires determination of the timing for faulting and mass-movement episodes during the Holocene. Our effort focused on basin slopes and turbidite systems on the basin floors for the area between Santa Barbara and San Diego, California. Dating condensed sections on slopes adjacent to fault zones provides better control on fault history where high-resolution, seismic-reflection data can be used to correlate sediment between the core site and the fault zones. This study reports and interprets 147 radiocarbon dates from 43 U.S. Geological Survey piston cores as well as 11 dates from Ocean Drilling Program Site 1015 on the floor of Santa Monica Basin. One hundred nineteen dates from 39 of the piston cores have not previously been published. Core locations were selected for hazard evaluation, but despite the nonuniform distribution of sample locations, the dates obtained for the late Quaternary deposits are useful for documenting changes in sediment-accumulation rates during the past 30 ka. Cores from basins receiving substantial sediment from rivers, i.e., Santa Monica Basin and the Gulf of Santa Catalina, show a decrease in sediment supply during the middle Holocene, but during the late Holocene after sea level had reached the current highstand condition, rates then increased partly in response to an increase in El Ni??o-Southern Oscillation events during the past 3.5 ka. ?? 2009 The Geological Society of America.

Geologic, water-chemistry, and hydrologic data from multiple-well monitoring sites and selected water-supply wells in the Santa Clara Valley, California, 1999-2003

USGS Publications Warehouse

Newhouse, M.W.; Hanson, R.T.; Wentworth, C.M.; Everett, Rhett; Williams, C.F.; Tinsley, J.C.; Noce, T.E.; Carkin, B.A.

2004-01-01

To better identify the three-dimensional geohydrologic framework of the Santa Clara Valley, lithologic, geologic, geophysical, geomechanical, hydraulic, and water-chemistry data were collected from eight ground-water multiple-well monitoring sites constructed in Santa Clara County, California, as part of a series of cooperative studies between the U.S. Geological Survey and the Santa Clara Valley Water District. The data are being used to update and improve the three-dimensional geohydrologic framework of the basin and to address issues related to water supply, water chemistry, sequence stratigraphy, geology, and geological hazards. This report represents a compilation of data collected from 1999 to 2003, including location and design of the monitoring sites, cone penetrometer borings, geologic logs, lithologic logs, geophysical logs, core analysis, water-chemistry analysis, ground-water-level measurements, and hydraulic and geomechanical properties from wells and core samples. Exploratory cone penetrometer borings taken in the upper 17 to 130 feet at six of the monitoring sites identified the base of Holocene as no deeper than 75 feet in the central confined area and no deeper than 35 feet in the southern unconfined areas of the valley. Generalized lithologic characterization from the monitoring sites indicates about four to six different aquifer units separated by relatively fine-grained units occur within the alluvial deposits shallower than 860 feet deep. Analysis of geophysical logs indicates that coarse-grained units varied in thickness between 10 and 25 feet in the southeastern unconfined area of the valley and between 50 and 200 feet in the south-central and southwestern areas of the valley. Deviations from temperature-gradient logs indicate that the majority of horizontal ground-water flow occurs above a depth of 775 feet in the south central and above 510 feet in the southeastern areas of the valley. Bulk physical properties from more than 1,150 feet of core samples indicate an average primary-wave velocity of about 5,515 feet per second, a bimodal distribution of density between 2.19 and 2.32 grams per cubic centimeter with an average of 2.16 grams per cubic centimeter, and a magnetic susceptibility that generally ranged between 9 and 40 with an average of 22. Water-chemistry data indicate that the ground water in the alluvial aquifers generally is low in total dissolved solids and chloride and of good quality. Isotopic data indicate that water from artificial recharge is present throughout the shallower parts of the aquifer system but may not be present toward the center of the valley. The percentage of water from artificial recharge present in ground water ranges from 0 to 61 percent for water-supply wells. The age of most shallow ground water is less than 2,000 years before present, and the age of deeper ground water is as much as 39,900 years before present, as determined from carbon age dates. Initial water-level data from the multiple-well monitoring sites indicate seasonal water-level fluctuations as great as 60 feet and water-level differences between aquifers as great as 10 feet. The water-level hydrographs indicate different water-level changes and relations between aquifers in different parts of the basin. However, most of these hydrographs indicate the potential for downward water-level gradients, with lower hydraulic heads in the deeper monitoring wells. Hydraulic properties of selected new monitoring wells indicate that horizontal hydraulic conductivities range from 0.1 to 583 feet per day. Hydraulic testing of selected core samples yielded vertical hydraulic conductivity values ranging from 8 x 10-4 to 0.3 feet per day, and effective porosity values ranging from 0.21 to 0.4. Geomechanical properties estimated from one-dimensional consolidation tests of selected core samples resulted in geometric mean inelastic and elastic specific storage values of 1.5 x 10-

Fine structure of the late Eocene Ir anomaly in marine sediments

NASA Technical Reports Server (NTRS)

Asaro, F.

1991-01-01

The Late Eocene Ir abundance profile in deep sea cores from Ocean Drilling Program Leg 113 Hole 689B on the Maude Rise off of Antarctica was studied with 410 samples continuously in 10 cm increments and measured with the Iridium Coincidence (ICS). The ICS was subsequently modified to measure 13 other elements simultaneously with the Ir. The abundance profiles of these elements were then determined in the Late Eocene Massignano section in central Italy with 250 samples (encompassing roughly 2 million years of accumulation) which were collected about every 5 cm in about 2 cm increments. These studies augmented a previous one (which included many elements) of deep sea cores from Deep Sea Drilling Project Site 592 on the Lord Howe Rise in the Tasman Sea between Australia and New Zealand. In the latter study, 50 samples (encompassing roughly 0.7 million years of accumulation) were collected continuously in 10 cm increments. The results from these studies are discussed.

Phospholipid and Respiratory Quinone Analyses From Extreme Environments

NASA Astrophysics Data System (ADS)

Pfiffner, S. M.

2008-12-01

Extreme environments on Earth have been chosen as surrogate sites to test methods and strategies for the deployment of space craft in the search for extraterrestrial life. Surrogate sites for many of the NASA astrobiology institutes include the South African gold mines, Canadian subpermafrost, Atacama Desert, and acid rock drainage. Soils, sediments, rock cores, fracture waters, biofilms, and service and drill waters represent the types of samples collected from these sites. These samples were analyzed by gas chromatography mass spectrometry for phospholipid fatty acid methyl esters and by high performance liquid chromatography atmospheric pressure chemical ionization tandem mass spectrometry for respiratory quinones. Phospholipid analyses provided estimates of biomass, community composition, and compositional changes related to nutritional limitations or exposure to toxic conditions. Similar to phospholipid analyses, respiratory quinone analyses afforded identification of certain types of microorganisms in the community based on respiration and offered clues to in situ redox conditions. Depending on the number of samples analyzed, selected multivariate statistical methods were applied to relate membrane lipid results with site biogeochemical parameters. Successful detection of life signatures and refinement of methodologies at surrogate sites on Earth will be critical for the recognition of extraterrestrial life. At this time, membrane lipid analyses provide useful information not easily obtained by other molecular techniques.

Predictors of patient non-attendance at Improving Access to Psychological Therapy services demonstration sites

PubMed Central

Di Bona, Laura; Saxon, David; Barkham, Michael; Dent-Brown, Kim; Parry, Glenys

2014-01-01

Background Improving Access to Psychological Therapy (IAPT) services have increased the number of people with common mental health disorders receiving psychological therapy in England, but concerns remain about how equitably these services are accessed. Method Using cohort patient data (N=363) collected as part of the independent evaluation of the two demonstration sites, logistic regression was utilised to identify socio-demographic, clinical and service factors predictive of IAPT non-attendance. Results Significant predictors of IAPT first session non-attendance by patients were: lower non-risk score on the Clinical Outcomes in Routine Evaluation-Outcome Measure (CORE-OM); more frequent thoughts of “being better off dead” (derived from the CORE-OM); either a very recent onset of common mental health disorder (1 month or less) or a long term condition (more than 2 years); and site. Limitations The small sample and low response rate are limitations, as the sample may not be representative of all those referred to IAPT services. The predictive power of the logistic regression model is limited and suggests other variables not available in the dataset may also be important predictors. Conclusions The clinical characteristics of risk to self, severity of emotional distress, and illness duration, along with site, were more predictive of IAPT non-attendance than socio-demographic characteristics. Further testing of the relationship between these variables and IAPT non-attendance is recommended. Clinicians should monitor IAPT uptake in those they refer and implement strategies to increase their engagement with services, particularly when referring people presenting with suicidal ideation or more chronic illness. PMID:25194784

Landscape archaeological research and 3D modelling of the Neolithic site of Barcin Höyük, Northwest Turkey

NASA Astrophysics Data System (ADS)

Groenhuijzen, Mark; Kluiving, Sjoerd; Gerritsen, Fokke

2013-04-01

Barcin Höyük is a dwelling mound in the Yenişehir valley in Northwest Turkey. It is found to be one of the oldest farming communities in the region, with an archaeological record stretching from the Neolithic up to the Roman period, with some finds dating to the Byzantine period. An earlier geoarchaeological study was performed in 2009, revealing interesting deposits from a marsh or lake, and two possible small rivers or streams. The current study forms a continuation of the previous research, aimed at improving our understanding of the interrelationship of the site and the landscape, especially around the early neolithisation process. The following research questions have been investigated: is it possible to bring more detail into the knowledge of the landscape around the site through denser and more detailed coring, can a manner of time-control on the sedimentation be found, and is a 3D-model a suitable tool for storing and analysing data to improve our understanding of the landscape and the site? Data was gathered from hand auger corings placed in the vicinity of the excavation site. Soil samples were systematically gathered from these corings, of which a selection was subjected to laboratory analyses. The methods used here are grain size analysis, thermogravimetric analysis and end-member analysis. Spatial analytical tools, such as ArcMap and ArcScene were used to store and analyse all data, more specifically in order to construct the 3D-subsurface model. The deepest sedimentary unit encountered in the corings can be ascribed to a lacustrine environment, inferring that a lake might have been present at the site location prior to the first Neolithic habitation of Barcin Höyük. Two subsequent layers of gravel and coarse sand are found within the lacustrine unit and can be correlated around the site. In the 3D-subsurface model constructed for the site, these layers show a distinct elevation with a relief of almost 2.5 metres. These results can be interpreted as a presence of a large lake prior to the site, with the coarse layers representing beach deposits at the edge of the lake. The first habitation phase occurred on a natural elevation in the landscape left after a lake retreat, represented by the elevation in the coarse layers. A large amount of archaeological material was discovered in the corings, providing an opportunity for linking sedimentation with the archaeological record. The presence of a natural elevation near a lake edge might be a reason for the first habitation phase to begin. The archaeological material found in the corings proved useful in relative dating some of the layers and provides an indication of the sedimentation speed. The 3D-model of the subsurface is successful in providing more insight into the horizontal and vertical distribution of the deposits around the site of Barcin Höyük, and is also useful for combining and comparing data from this research with other sources.

Extensive Core Microbiome in Drone-Captured Whale Blow Supports a Framework for Health Monitoring

PubMed Central

Miller, Carolyn A.; Moore, Michael J.; Durban, John W.; Fearnbach, Holly; Barrett-Lennard, Lance G.

2017-01-01

ABSTRACT The pulmonary system is a common site for bacterial infections in cetaceans, but very little is known about their respiratory microbiome. We used a small, unmanned hexacopter to collect exhaled breath condensate (blow) from two geographically distinct populations of apparently healthy humpback whales (Megaptera novaeangliae), sampled in the Massachusetts coastal waters off Cape Cod (n = 17) and coastal waters around Vancouver Island (n = 9). Bacterial and archaeal small-subunit rRNA genes were amplified and sequenced from blow samples, including many of sparse volume, as well as seawater and other controls, to characterize the associated microbial community. The blow microbiomes were distinct from the seawater microbiomes and included 25 phylogenetically diverse bacteria common to all sampled whales. This core assemblage comprised on average 36% of the microbiome, making it one of the more consistent animal microbiomes studied to date. The closest phylogenetic relatives of 20 of these core microbes were previously detected in marine mammals, suggesting that this core microbiome assemblage is specialized for marine mammals and may indicate a healthy, noninfected pulmonary system. Pathogen screening was conducted on the microbiomes at the genus level, which showed that all blow and few seawater microbiomes contained relatives of bacterial pathogens; no known cetacean respiratory pathogens were detected in the blow. Overall, the discovery of a shared large core microbiome in humpback whales is an important advancement for health and disease monitoring of this species and of other large whales. IMPORTANCE The conservation and management of large whales rely in part upon health monitoring of individuals and populations, and methods generally necessitate invasive sampling. Here, we used a small, unmanned hexacopter drone to noninvasively fly above humpback whales from two populations, capture their exhaled breath (blow), and examine the associated microbiome. In the first extensive examination of the large-whale blow microbiome, we present surprising results about the discovery of a large core microbiome that was shared across individual whales from geographically separated populations in two ocean basins. We suggest that this core microbiome, in addition to other microbiome characteristics, could be a useful feature for health monitoring of large whales worldwide. PMID:29034331

Extensive Core Microbiome in Drone-Captured Whale Blow Supports a Framework for Health Monitoring.

PubMed

Apprill, Amy; Miller, Carolyn A; Moore, Michael J; Durban, John W; Fearnbach, Holly; Barrett-Lennard, Lance G

2017-01-01

The pulmonary system is a common site for bacterial infections in cetaceans, but very little is known about their respiratory microbiome. We used a small, unmanned hexacopter to collect exhaled breath condensate (blow) from two geographically distinct populations of apparently healthy humpback whales ( Megaptera novaeangliae ), sampled in the Massachusetts coastal waters off Cape Cod ( n = 17) and coastal waters around Vancouver Island ( n = 9). Bacterial and archaeal small-subunit rRNA genes were amplified and sequenced from blow samples, including many of sparse volume, as well as seawater and other controls, to characterize the associated microbial community. The blow microbiomes were distinct from the seawater microbiomes and included 25 phylogenetically diverse bacteria common to all sampled whales. This core assemblage comprised on average 36% of the microbiome, making it one of the more consistent animal microbiomes studied to date. The closest phylogenetic relatives of 20 of these core microbes were previously detected in marine mammals, suggesting that this core microbiome assemblage is specialized for marine mammals and may indicate a healthy, noninfected pulmonary system. Pathogen screening was conducted on the microbiomes at the genus level, which showed that all blow and few seawater microbiomes contained relatives of bacterial pathogens; no known cetacean respiratory pathogens were detected in the blow. Overall, the discovery of a shared large core microbiome in humpback whales is an important advancement for health and disease monitoring of this species and of other large whales. IMPORTANCE The conservation and management of large whales rely in part upon health monitoring of individuals and populations, and methods generally necessitate invasive sampling. Here, we used a small, unmanned hexacopter drone to noninvasively fly above humpback whales from two populations, capture their exhaled breath (blow), and examine the associated microbiome. In the first extensive examination of the large-whale blow microbiome, we present surprising results about the discovery of a large core microbiome that was shared across individual whales from geographically separated populations in two ocean basins. We suggest that this core microbiome, in addition to other microbiome characteristics, could be a useful feature for health monitoring of large whales worldwide.

Strontium Isotope Dating of Metalliferous Sediment in the SW Pacific Basin

NASA Astrophysics Data System (ADS)

Stancin, A. M.; Gleason, J. D.; Owen, B. M.; Rea, D. K.; Moore, T. C.; Hendy, I. L.; Lyle, M. W.; Blum, J. D.

2007-12-01

A 2 million km2 region virtually devoid of sediment was identified in the remote SW Pacific Basin during the TUIM- 3 2005 drill site survey cruise. This region, termed the "South Pacific Bare Zone", comprises ocean floor dating back to the Late Cretaceous. Within the Bare Zone, a small (1km2) abyssal valley containing sediment to a depth of 24 m was sampled using a large diameter piston core (MV0502-15JC, 31 ° 42.194'S, 143 ° 30.331'W), leading to recovery of 8.35 m of metalliferous sediment at 5082 m water depth. Fish-teeth Sr-isotope stratigraphy reveals a continuous record of sedimentation from 31 Ma to present at this site. The fish teeth age-depth profile and INAA geochemistry reveal an exponentially decreasing hydrothermal flux, with sedimentation rates approaching 0.05 mm/kyr after 20 Ma. The source of hydrothermal activity at this site was likely the Pacific- Farallon Ridge, which went extinct at 20 Ma. A second piston core (MV0502-16JC; 28 ° 05.151'S, 140 ° 14.140'W) was collected near MacDonald Seamounts located on the southeastern end of the Cook-Austral island chain outside the Bare Zone and recovered 10.5 m of hydrothermal sediment and biogenic ooze. The lower 65 cm of the core consists of a coccolith ooze. From 10 mbsf depth to 1.5 mbsf depth, the core contians reddish black zeolitic clay, while the upper 1.5 mbsf contains biogenic ooze associated with abundant Late Pleistocene foraminifera remains. Concordant nannofossil and fish teeth ages at the base of the core (27-28 Ma), and Pleistocene ages near the top of the core reinforce the validity of the Sr fish teeth method for dating hydrothermal cores. These independent records suggest that regional hydrothermal activity during the Oligocene may have been related to a series of late Eocene/early Oligocene ridge jumps, propagating rifts and seafloor spreading centers that accompanied large-scale plate tectonic reorganization of South Pacific seafloor.

An endoglycosidase-assisted LC-MS/MS-based strategy for the analysis of site-specific core-fucosylation of low-concentrated glycoproteins in human serum using prostate-specific antigen (PSA) as example.

PubMed

Lang, Robert; Leinenbach, Andreas; Karl, Johann; Swiatek-de Lange, Magdalena; Kobold, Uwe; Vogeser, Michael

2018-05-01

Recently, site-specific fucosylation of glycoproteins has attracted attention as it can be associated with several types of cancers including prostate cancer. However, individual glycoproteins, which might serve as potential cancer markers, often are very low-concentrated in complex serum matrices and distinct glycan structures are hard to detect by immunoassays. Here, we present a mass spectrometry-based strategy for the simultaneous analysis of core-fucosylated and total prostate-specific antigen (PSA) in human serum in the low ng/ml concentration range. Sample preparation comprised an immunoaffinity capture step to enrich total PSA from human serum using anti-PSA antibody coated magnetic beads followed by consecutive two-step on-bead partial deglycosylation with endoglycosidase F3 and tryptic digestion prior to LC-MS/MS analysis. The method was shown to be linear from 0.5 to 60 ng/ml total PSA concentrations and allows the simultaneous quantification of core-fucosylated PSA down to 1 ng/ml and total PSA lower than 0.5 ng/ml. The imprecision of the method over two days ranged from 9.7-23.2% for core-fucosylated PSA and 10.3-18.3% for total PSA depending on the PSA level. The feasibility of the method in native sera was shown using three human specimens. To our knowledge, this is the first MS-based method for quantification of core-fucosylated PSA in the low ng/ml concentration range in human serum. This method could be used in large patient cohorts as core-fucosylated PSA may be a diagnostic biomarker for the differentiation of prostate cancer and other prostatic diseases, such as benign prostatic hyperplasia (BPH). Furthermore, the described strategy could be used to monitor potential changes in site-specific core-fucosylation of other low-concentrated glycoproteins, which could serve as more specific markers ("marker refinement") in cancer research. Copyright © 2018 Elsevier B.V. All rights reserved.

Rapid Access Ice Drill: A New Tool for Exploration of the Deep Antarctic Ice Sheets and Subglacial Geology

NASA Astrophysics Data System (ADS)

Goodge, J. W.; Severinghaus, J. P.

2014-12-01

The Rapid Access Ice Drill (RAID) will penetrate the Antarctic ice sheets in order to core through deep ice, the glacial bed, and into bedrock below. This new technology will provide a critical first look at the interface between major ice caps and their subglacial geology. Currently in construction, RAID is a mobile drilling system capable of making several long boreholes in a single field season in Antarctica. RAID is interdisciplinary and will allow access to polar paleoclimate records in ice >1 Ma, direct observation at the base of the ice sheets, and recovery of rock cores from the ice-covered East Antarctic craton. RAID uses a diamond rock-coring system as in mineral exploration. Threaded drill-pipe with hardened metal bits will cut through ice using reverse circulation of Estisol for pressure-compensation, maintenance of temperature, and removal of ice cuttings. Near the bottom of the ice sheet, a wireline bottom-hole assembly will enable diamond coring of ice, the glacial bed, and bedrock below. Once complete, boreholes will be kept open with fluid, capped, and made available for future down-hole measurement of thermal gradient, heat flow, ice chronology, and ice deformation. RAID will also sample for extremophile microorganisms. RAID is designed to penetrate up to 3,300 meters of ice and take sample cores in less than 200 hours. This rapid performance will allow completion of a borehole in about 10 days before moving to the next drilling site. RAID is unique because it can provide fast borehole access through thick ice; take short ice cores for paleoclimate study; sample the glacial bed to determine ice-flow conditions; take cores of subglacial bedrock for age dating and crustal history; and create boreholes for use as an observatory in the ice sheets. Together, the rapid drilling capability and mobility of the drilling system, along with ice-penetrating imaging methods, will provide a unique 3D picture of the interior Antarctic ice sheets.

Developmental regulation of collagenase-3 mRNA in normal, differentiating osteoblasts through the activator protein-1 and the runt domain binding sites

NASA Technical Reports Server (NTRS)

Winchester, S. K.; Selvamurugan, N.; D'Alonzo, R. C.; Partridge, N. C.

2000-01-01

Collagenase-3 mRNA is initially detectable when osteoblasts cease proliferation, increasing during differentiation and mineralization. We showed that this developmental expression is due to an increase in collagenase-3 gene transcription. Mutation of either the activator protein-1 or the runt domain binding site decreased collagenase-3 promoter activity, demonstrating that these sites are responsible for collagenase-3 gene transcription. The activator protein-1 and runt domain binding sites bind members of the activator protein-1 and core-binding factor family of transcription factors, respectively. We identified core-binding factor a1 binding to the runt domain binding site and JunD in addition to a Fos-related antigen binding to the activator protein-1 site. Overexpression of both c-Fos and c-Jun in osteoblasts or core-binding factor a1 increased collagenase-3 promoter activity. Furthermore, overexpression of c-Fos, c-Jun, and core-binding factor a1 synergistically increased collagenase-3 promoter activity. Mutation of either the activator protein-1 or the runt domain binding site resulted in the inability of c-Fos and c-Jun or core-binding factor a1 to increase collagenase-3 promoter activity, suggesting that there is cooperative interaction between the sites and the proteins. Overexpression of Fra-2 and JunD repressed core-binding factor a1-induced collagenase-3 promoter activity. Our results suggest that members of the activator protein-1 and core-binding factor families, binding to the activator protein-1 and runt domain binding sites are responsible for the developmental regulation of collagenase-3 gene expression in osteoblasts.

2014 annual summary of the lower Gunnison River Basin Selenium Management Program water-quality monitoring, Colorado

USGS Publications Warehouse

Henneberg, Mark F.

2016-08-10

Dissolved-selenium loading analyses of data collected at 18 water-quality sites in the lower Gunnison River Basin in Colorado were completed through water year (WY) 2014. A WY is defined as October 1–September 30. Selenium is a trace element that bioaccumulates in aquatic food chains and can cause reproductive failure, deformities, and other harmful effects. This report presents information on the dissolved-selenium loads at 18 sites in the lower Gunnison River Basin for WYs 2011–2014. Annual dissolved-selenium loads were calculated at 5 sites with continuous U.S. Geological Survey (USGS) streamflow gages, whereas instantaneous dissolved-selenium loads were calculated for the remaining 13 sites using water-quality samples that had been collected periodically during WYs 2011–2014. Annual dissolved-selenium loads for WY 2014 ranged from 336 pounds (lb) at Uncompahgre River at Colona to 13,300 lb at Gunnison River near Grand Junction (Whitewater). Most sites in the basin had a median instantaneous dissolved-selenium load of less than 20.0 lb per day. In general, dissolved-selenium loads at Gunnison River main-stem sites showed an increase from upstream to downstream.The State of Colorado water-quality standard for dissolved selenium of 4.6 micrograms per liter (µg/L) was compared to the 85th percentiles for dissolved selenium at selected water-quality sites. Annual 85th percentiles for dissolved selenium were calculated for the five core USGS sites having streamflow gages using estimated dissolved-selenium concentrations from linear regression models. These annual 85th percentiles in WY 2014 ranged from 0.97 µg/L at Uncompahgre River at Colona to 16.7 µg/L at Uncompahgre River at Delta. Uncompahgre River at Delta and Whitewater were the only core sites where water samples exceeded the State of Colorado water-quality standard for dissolved selenium of 4.6 µg/L.Instantaneous 85th percentiles for dissolved selenium were calculated for sites with sufficient data using water-quality samples collected during WYs 2011–2014. The instantaneous 85th percentiles for samples for WY 2014 ranged from 1.1 µg/L at Uncompahgre River at Colona to 125 µg/L at Loutzenhizer Arroyo at North River Road.A trend analysis was completed for Whitewater to determine if dissolved-selenium loads are increasing or decreasing. The trend analysis indicates a decrease of 8,000 lb from WY 1986 to WY 2014, a 34.8 percent reduction during the time period, and an additional 6.2 percent reduction from a reported 28.6 percent reduction during WYs 1986–2008. The trend analysis for WY 1992 to WY 2014 indicates a decrease of 5,800 lb per year, or 27.9 percent.

Analyzing tree cores to detect petroleum hydrocarbon-contaminated groundwater at a former landfill site in the community of Happy Valley-Goose Bay, eastern Canadian subarctic.

PubMed

Fonkwe, Merline L D; Trapp, Stefan

2016-08-01

This research examines the feasibility of analyzing tree cores to detect benzene, toluene, ethylbenzene, and m, p, o-xylene (BTEX) compounds and methyl tertiary-butyl ether (MTBE) in groundwater in eastern Canada subarctic environments, using a former landfill site in the remote community of Happy Valley-Goose Bay, Labrador. Petroleum hydrocarbon contamination at the landfill site is the result of environmentally unsound pre-1990s disposal of households and industrial solid wastes. Tree cores were taken from trembling aspen, black spruce, and white birch and analyzed by headspace-gas chromatography-mass spectrometry. BTEX compounds were detected in tree cores, corroborating known groundwater contamination. A zone of anomalously high concentrations of total BTEX constituents was identified and recommended for monitoring by groundwater wells. Tree cores collected outside the landfill site at a local control area suggest the migration of contaminants off-site. Tree species exhibit different concentrations of BTEX constituents, indicating selective uptake and accumulation. Toluene in wood exhibited the highest concentrations, which may also be due to endogenous production. Meanwhile, MTBE was not found in the tree cores and is considered to be absent in the groundwater. The results demonstrate that tree-core analysis can be useful for detecting anomalous concentrations of petroleum hydrocarbons, such as BTEX compounds, in subarctic sites with shallow unconfined aquifers and permeable soils. This method can therefore aid in the proper management of contamination during landfill operations and after site closures.

Collecting Ground Samples for Balloon-Borne Instruments

NASA Technical Reports Server (NTRS)

Jones, Jack; Zimmerman, Wayne; Wu, Jiunn Jenq

2009-01-01

A proposed system in a gondola containing scientific instruments suspended by a balloon over the surface of the Saturn moon Titan would quickly acquire samples of rock or ice from the ground below. Prototypes of a sample-collecting device that would be a major part of the system have been tested under cryogenic and non-cryogenic conditions on Earth. Systems like this one could also be used in non-cryogenic environments on Earth to collect samples of rock, soil, ice, mud, or other ground material from such inaccessible or hazardous locations as sites of suspected chemical spills or biological contamination. The sample-collecting device would be a harpoonlike device that would be connected to the balloon-borne gondola by a tether long enough to reach the ground. The device would be dropped from the gondola to acquire a sample, then would be reeled back up to the gondola, where the sample would be analyzed by the onboard instruments. Each prototype of the sample-collecting device has a sharp front (lower) end, a hollow core for retaining a sample, a spring for holding the sample in the hollow core, and a rear (upper) annular cavity for retaining liquid sample material. Aerodynamic fins at the rear help to keep the front end pointed downward. In tests, these prototype devices were dropped from various heights and used to gather samples of dry sand, moist sand, cryogenic water ice, and warmer water ice.

Patient-oriented interactive E-health tools on U.S. hospital Web sites.

PubMed

Huang, Edgar; Chang, Chiu-Chi Angela

2012-01-01

The purpose of this study is to provide evidence for strategic planning regarding e-health development in U.S. hospitals. A content analysis of a representative sample of the U.S. hospital Web sites has revealed how U.S. hospitals have taken advantage of the 21 patient-oriented interactive tools identified in this study. Significant gaps between various types of hospitals have also been found. It is concluded that although the majority of the U.S. hospitals have adopted traditional functional tools, they need to make significant inroad in implementing the core e-business tools to serve their patients/users, making their Web sites more efficient marketing tools.

Hydrothermal minerals and microstructures in the Silangkitang geothermal field along the Great Sumatran fault zone, Sumatra, Indonesia

USGS Publications Warehouse

Moore, Diane E.; Hickman, S.; Lockner, D.A.; Dobson, P.F.

2001-01-01

Detailed study of core samples of silicic tuff recovered from three geothermal wells along the strike-slip Great Sumatran fault zone near Silangkitang, North Sumatra, supports a model for enhanced hydrothermal circulation adjacent to this major plate-boundary fault. Two wells (A and C) were drilled nearly vertically ??1 km southwest of the eastern (i.e., the principal) fault trace, and the third, directional well (B) was drilled eastward from the site of well A to within ??100 m of the principal fault trace. The examined core samples come from depths of 1650-2120 m at measured well temperatures of 180-320 ??C. The samples collected near the principal fault trace have the highest temperatures, the largest amount of secondary pore space that correlates with high secondary permeability, and the most extensive hydrothermal mineral development. Secondary permeability and the degree of hydrothermal alteration decrease toward the southwestern margin of the fault zone. These features indicate episodic, localized flow of hot, possibly CO2-rich fluids within the fault zone. The microstructure populations identified in the core samples correlate to the subsidiary fault patterns typical of strike-slip faults. The geothermal reservoir appears to be centered on the fault zone, with the principal fault strands and adjoining, highly fractured and hydrothermally altered rock serving as the main conduits for vertical fluid flow and advective heat transport from deeper magmatic sources.

Acoustic and mechanical properties of Nankai accretionary prism core samples

NASA Astrophysics Data System (ADS)

Raimbourg, Hugues; Hamano, Yozo; Saito, Saneatsu; Kinoshita, Masataka; Kopf, Achim

2011-04-01

We studied undeformed sediment and accreted strata recently recovered by Ocean Drilling Program/Integrated Ocean Drilling Program (ODP/IODP) drilling in Nankai Trough convergent margin to unravel the changes in physical properties from initial deposition to incipient deformation. We have derived acoustic (Vp) and mechanical (uniaxial poroelastic compliance, compaction amplitude) properties of samples from various drill sites along the Muroto (ODP 1173) and Kii transects (IODP C0001, C0002, C0006, and C0007) from isotropic loading tests where confining and pore pressure were independently applied. We quantified the dependence of Vp on both effective (Peff) and confining (Pc) pressure, which can be used to correct atmospheric pressure measurements of Vp. Experimental Vp obtained on core samples extrapolated to in situ conditions are slightly higher than logging-derived velocities, which can be attributed either to velocity dispersion or to the effect of large-scale faults and weak zones on waves with longer wavelength. In the high-porosity (30%-60%) tested sediments, velocities are controlled at first order by porosity and not by lithology, which is in agreement with our static measurements of drained framework incompressibility, much smaller than fluid incompressibility. Rather than framework incompressibility, shear modulus is probably the second-order control on Vp, accounting for most of the difference between actual Vp and the prediction by Wood's (1941) suspension model. We also quantified the mechanical state of Nankai samples in terms of anisotropy, diagenesis, and consolidation. Both acoustic and mechanical parameters reveal similar values in vertical and horizontal directions, attesting to the very low anisotropy of the tested material. When considering the porous samples of the Upper Shikoku Basin sediments (Site 1173) as examples of diagenetically cemented material, several mechanical and acoustic attributes appeared as reliable experimental indicators of the presence of intergrain cementation. We also detected incipient cementation in samples from IODP Site C0001 (accretionary prism unit). In terms of consolidation, we distinguished two classes of material response (shallow, deformable samples and deep, hardly deformable ones) based on the amount of compaction upon application of a Peff large with respect to the inferred in situ value, with a transition that might be related to a critical porosity.

The Patroon Creek Contamination Migration Investigation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dufek, K.; Zafran, A.; Moore, J.T.

2006-07-01

Shaw performed a Site Investigation (SI) for sediment within the Unnamed Tributary of the Patroon Creek, a section of the Patroon Creek, and the Three Mile Reservoir as part of the overall contract with the United States Army Corps of Engineers (USACE) to remediate the Colonie Formerly Utilized Sites Remedial Action Program (FUSRAP) Site. The Unnamed Tributary formerly flowed through the former Patroon Lake, which was located on the main site property and was used as a landfill for radiological and chemical wastes. The objective of the investigation was to determine the absence/presence of radioactive contamination within the three Areasmore » of Concern (AOC). In order to accomplish this objective, Shaw assembled a team to produce a Technical Memorandum that provided an in-depth understanding of the environmental conditions related to the Patroon Creek. Upon completion and analysis of the Technical Memorandum, a Conceptual Site Model (CSM) was constructed and a Technical Planning Program (TPP) was held to develop a Sediment Investigation Work Plan and Sediment Investigation Sampling and Analysis Plan. A total of 32 sample locations were analyzed using on-site direct gamma scans with a Pancake Geiger-Mueller (PGM) instrument for screening purposes and samples were analyzed at on-site and off-site laboratories. The highest interval from each core scan was selected for on-site analysis utilizing a High Purity Germanium (HPGe) detector. Eight of these samples were sent off-site for gamma/alpha spectroscopy confirmation. The data collected during the SI indicated that the U-238 cleanup criterion was exceeded in sediment samples collected from two locations within the Unnamed Tributary but not in downstream sections of Patroon Creek or Three Mile Reservoir. Future actions for impacted sediment in the Unnamed Tributary will be further evaluated. Concentrations of U-238 and Th-232 in all other off-site sediment samples collected from the Unnamed Tributary, Patroon Creek, and the Three Mile Reservoir indicate that no further action is required in these areas. The data was also compared to ecological screening criteria. None of the contaminants of concern (U-238, Th-232, and U-235) had concentrations exceeding the screening values. The evaluation indicates no adverse impacts to ecological receptors. (authors)« less

Description of core samples returned by Apollo 12

NASA Technical Reports Server (NTRS)

Lindsay, J. F.; Fryxell, R.

1971-01-01

Three core samples were collected by the Apollo 12 astronauts. Two are single cores, one of which (sample 12026) was collected close to the lunar module during the first extravehicular activity period and is 19.3 centimeters long. The second core (sample 12027) was collected at Sharp Crater during the second extravehicular activity period and is 17.4 centimeters long. The third sample is a double core (samples 12025 and 12028), which was collected near Halo Crater during the second extravehicular activity period. Unlike the other cores, the double-drive-tube core sample has complex layering with at least 10 clearly defined stratigraphic units. This core sample is approximately 41 centimeters long.

Dating of 30m ice cores drilled by Japanese Antarctic Research Expedition and environmental change study

NASA Astrophysics Data System (ADS)

Motoyama, H.; Suzuki, T.; Fukui, K.; Ohno, H.; Hoshina, Y.; Hirabayashi, M.; Fujita, S.

2017-12-01

1. Introduction It is possible to reveal the past climate and environmental change from the ice core drilled in polar ice sheet and glaciers. The 54th Japanese Antarctic Research Expedition conducted several shallow core drillings up to 30 m depth in the inland and coastal areas of the East Antarctic ice sheet. Ice core sample was cut out at a thickness of about 5 cm in the cold room of the National Institute of Polar Research, and analyzed ion, water isotope, dust and so one. We also conducted dielectric profile measurement (DEP measurement). The age as a key layer of large-scale volcanic explosion was based on Sigl et al. (Nature Climate Change, 2014). 2. Inland ice core Ice cores were collected at the NDF site (77°47'14"S, 39°03'34"E, 3754 m.a.s.l.) and S80 site (80°00'00"S, 40°30'04"E, 3622 m.a.s.l.). Dating of ice core was done as follows. Calculate water equivalent from core density. Accumulate water equivalent from the surface. Approximate the relation of depth - cumulative water equivalent by a quartic equation. We determined the key layer with nssSO42 - peak corresponding to several large volcanic explosions. The accumulation rate was kept constant between the key layers. As a result, NDF was estimated to be around 1360 AD and S80 was estimated to be around 1400 AD in the deepest ice core. 3. Coastal ice core An ice core was collected at coastal H15 sites (69°04'10"S, 40°44'51"E, 1030 m.a.s.l.). Dating of ice core was done as follows. Calculate water equivalent from ice core density. Accumulate water equivalent from the surface. Approximate the relation of depth - cumulative water equivalent by a quartic equation. Basically we decided to summer (December) and winter (June) due to the seasonal change of the water isotope (δD or δ18O). In addition to the seasonal change of isotope, confirm the following. Maximum of SO42- / Na +, which is earlier in time than the maximum of water isotope. Maximum of MSA at about the same time as the maximum of the water isotope. Na+ is maximal immediately after the local maximum of the water isotope. The deepest age was estimated to be around 1940 AD. 4. Example of results In the inland area, the annual average surface mass balance decreased from 1450 to 1850 AD, but it has increased since 1850 AD. The annual mass balance of coastal H15 is consistent with the result of snow stake measurement.

A new method of snowmelt sampling for water stable isotopes

USGS Publications Warehouse

Penna, D.; Ahmad, M.; Birks, S. J.; Bouchaou, L.; Brencic, M.; Butt, S.; Holko, L.; Jeelani, G.; Martinez, D. E.; Melikadze, G.; Shanley, J.B.; Sokratov, S. A.; Stadnyk, T.; Sugimoto, A.; Vreca, P.

2014-01-01

We modified a passive capillary sampler (PCS) to collect snowmelt water for isotopic analysis. Past applications of PCSs have been to sample soil water, but the novel aspect of this study was the placement of the PCSs at the ground-snowpack interface to collect snowmelt. We deployed arrays of PCSs at 11 sites in ten partner countries on five continents representing a range of climate and snow cover worldwide. The PCS reliably collected snowmelt at all sites and caused negligible evaporative fractionation effects in the samples. PCS is low-cost, easy to install, and collects a representative integrated snowmelt sample throughout the melt season or at the melt event scale. Unlike snow cores, the PCS collects the water that would actually infiltrate the soil; thus, its isotopic composition is appropriate to use for tracing snowmelt water through the hydrologic cycle. The purpose of this Briefing is to show the potential advantages of PCSs and recommend guidelines for constructing and installing them based on our preliminary results from two snowmelt seasons.

Hydrologic, lithologic, and chemical data for sediment in the shallow alluvial aquifer at two sites near Fallon, Churchill County, Nevada, 1984-85

USGS Publications Warehouse

Lico, M.S.; Welch, A.H.; Hughes, J.L.

1986-01-01

The U.S. Geological Survey collected an extensive amount of hydrogeologic data from the shallow alluvial aquifer at two study sites near Fallon, Nevada, from 1984 though 1985. These data were collected as part of a study to determine the geochemical controls on the mobility of arsenic and other trace elements in shallow groundwater systems. The main study area is approximately 7 miles south of Fallon. A subsidiary study area is about 8 miles east of Fallon. The data collected include lithologic logs and water level altitudes for the augered sampling wells and piezometers, and determinations of arsenic and selenium content, grain size, porosity, hydraulic conductivity, and mineralogy for sediment samples from cores. (USGS)

Pliocene planktic foraminifer census data from the North Atlantic region

USGS Publications Warehouse

,

1996-01-01

INTRODUCTION: The U.S. Geological Survey is conducting a long-term study of the climatic and oceanographic conditions of the Pliocene known as PRISM (Pliocene Research, Interpretation, and Synoptic Mapping). One of the major elements of the study involves the use of quantitative composition of planktic foraminifer assemblages to estimate seasurface temperatures and identify major oceanographic boundaries and water masses (Dowsett, 1991; Dowsett and Poore, 1991; Dowsett et al., 1992; Dowsett et al., 1994). We have analyzed more than 900 samples from 19 core sites in the North Atlantic Basin (Fig. 1) resulting in a large volume of raw census data. These data are presented here together to facilitate comparison of North Atlantic faunal assemblages. Latitude, longitude, water depth, source of faunal data and source of data used to construct age model (or publication from which age model was taken) are provided for each locality in Table 1. All ages refer to the geomagnetic polarity time scale of Berggren et al. (1985). Counts of species tabulated in each sample are given in Tables 2-20. DSDP and ODP sample designations are abbreviated in Tables 2-20 as core-section, depth within section in centimeters (eg. 10-5, 34 = core 10, section 5, 34 cm below top of section 5).

Strong vortex core pinning and Barkhausen-free magnetization response in thin Permalloy disks induced by implantation of 1 × 10{sup 4} Ga{sup +} ions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fani Sani, F., E-mail: fanisani@ualberta.ca, E-mail: mark.freeman@ualberta.ca; Losby, J. E.; Diao, Z.

2014-05-07

Artificial vortex core pinning sites are induced in thin Permalloy disks by point exposure to as few as 10 000 ions from a focused Ga{sup +} beam. These pinning sites yield a first-order change in the magnetization response of the disk. A single site can keep the vortex core pinned over an applied field range comparable to the vortex annihilation field of the unaltered disk. Several widely separated sites can work together to keep the core pinned in one place, while the Barkhausen effect is eliminated from the magnetization curve over a range approaching the saturation moment of the disk.

A UAV-based active AirCore system for measurements of greenhouse gases

NASA Astrophysics Data System (ADS)

Andersen, Truls; Scheeren, Bert; Peters, Wouter; Chen, Huilin

2018-05-01

We developed and field-tested an unmanned aerial vehicle (UAV)-based active AirCore for atmospheric mole fraction measurements of CO2, CH4, and CO. The system applies an alternative way of using the AirCore technique invented by NOAA. As opposed to the conventional concept of passively sampling air using the atmospheric pressure gradient during descent, the active AirCore collects atmospheric air samples using a pump to pull the air through the tube during flight, which opens up the possibility to spatially sample atmospheric air. The active AirCore system used for this study weighs ˜ 1.1 kg. It consists of a ˜ 50 m long stainless-steel tube, a small stainless-steel tube filled with magnesium perchlorate, a KNF micropump, and a 45 µm orifice working together to form a critical flow of dried atmospheric air through the active AirCore. A cavity ring-down spectrometer (CRDS) was used to analyze the air samples on site not more than 7 min after landing for mole fraction measurements of CO2, CH4, and CO. We flew the active AirCore system on a UAV near the atmospheric measurement station at Lutjewad, located in the northwest of the city of Groningen in the Netherlands. Five consecutive flights took place over a 5 h period on the same morning, from sunrise until noon. We validated the measurements of CO2 and CH4 from the active AirCore against those from the Lutjewad station at 60 m. The results show a good agreement between the measurements from the active AirCore and the atmospheric station (N = 146; R2CO2: 0.97 and R2CH4: 0.94; and mean differences: ΔCO2: 0.18 ppm and ΔCH4: 5.13 ppb). The vertical and horizontal resolution (for CH4) at typical UAV speeds of 1.5 and 2.5 m s-1 were determined to be ±24.7 to 29.3 and ±41.2 to 48.9 m, respectively, depending on the storage time. The collapse of the nocturnal boundary layer and the buildup of the mixed layer were clearly observed with three consecutive vertical profile measurements in the early morning hours. Besides this, we furthermore detected a CH4 hotspot in the coastal wetlands from a horizontal flight north to the dike, which demonstrates the potential of this new active AirCore method to measure at locations where other techniques have no practical access.

Hepatitis C virus core protein potentiates proangiogenic activity of hepatocellular carcinoma cells.

PubMed

Shao, Yu-Yun; Hsieh, Min-Shu; Wang, Han-Yu; Li, Yong-Shi; Lin, Hang; Hsu, Hung-Wei; Huang, Chung-Yi; Hsu, Chih-Hung; Cheng, Ann-Lii

2017-10-17

Increased angiogenic activity has been demonstrated in hepatitis C virus (HCV)-related hepatocellular carcinoma (HCC), but the mechanism was unclear. To study the role of HCV core protein, we used tube formation and Matrigel plug assays to assess the proangiogenic activity of an HCC cell line, HuH7, and 2 of its stable clones-HuH7-core-high and HuH7-core-low, with high and low HCV core protein expression, respectively. In both assays, HuH7-core-high and HuH7-core-low cells dose-dependently induced stronger angiogenesis than control cells. HuH7 cells with HCV core protein expression showed increased mRNA and protein expression of vascular endothelial growth factor (VEGF). VEGF inhibition by bevacizumab reduced the proangiogenic activity of HuH7-core-high cells. The promotor region of VEGF contains the binding site of activator protein-1 (AP-1). Compared with controls, HuH7-core-high cells had an increased AP-1 activity and nuclear localization of phospho-c-jun. AP-1 inhibition using either RNA knockdown or AP-1 inhibitors reduced the VEGF mRNA expression and the proangiogenic activity of HuH7-core-high cells. Among 131 tissue samples from HCC patients, HCV-related HCC revealed stronger VEGF expression than did hepatitis B virus-related HCC. In conclusion, increased VEGF expression through AP-1 activation is a crucial mechanism underlying the proangiogenic activity of the HCV core protein in HCC cells.

Hepatitis C virus core protein potentiates proangiogenic activity of hepatocellular carcinoma cells

PubMed Central

Shao, Yu-Yun; Hsieh, Min-Shu; Wang, Han-Yu; Li, Yong-Shi; Lin, Hang; Hsu, Hung-Wei; Huang, Chung-Yi; Hsu, Chih-Hung; Cheng, Ann-Lii

2017-01-01

Increased angiogenic activity has been demonstrated in hepatitis C virus (HCV)-related hepatocellular carcinoma (HCC), but the mechanism was unclear. To study the role of HCV core protein, we used tube formation and Matrigel plug assays to assess the proangiogenic activity of an HCC cell line, HuH7, and 2 of its stable clones—HuH7-core-high and HuH7-core-low, with high and low HCV core protein expression, respectively. In both assays, HuH7-core-high and HuH7-core-low cells dose-dependently induced stronger angiogenesis than control cells. HuH7 cells with HCV core protein expression showed increased mRNA and protein expression of vascular endothelial growth factor (VEGF). VEGF inhibition by bevacizumab reduced the proangiogenic activity of HuH7-core-high cells. The promotor region of VEGF contains the binding site of activator protein-1 (AP-1). Compared with controls, HuH7-core-high cells had an increased AP-1 activity and nuclear localization of phospho-c-jun. AP-1 inhibition using either RNA knockdown or AP-1 inhibitors reduced the VEGF mRNA expression and the proangiogenic activity of HuH7-core-high cells. Among 131 tissue samples from HCC patients, HCV-related HCC revealed stronger VEGF expression than did hepatitis B virus-related HCC. In conclusion, increased VEGF expression through AP-1 activation is a crucial mechanism underlying the proangiogenic activity of the HCV core protein in HCC cells. PMID:29156827

Children's exposure to food advertising on free-to-air television: an Asia-Pacific perspective.

PubMed

Kelly, Bridget; Hebden, Lana; King, Lesley; Xiao, Yang; Yu, Yang; He, Gengsheng; Li, Liangli; Zeng, Lingxia; Hadi, Hamam; Karupaiah, Tilakavati; Hoe, Ng See; Noor, Mohd Ismail; Yoon, Jihyun; Kim, Hyogyoo

2016-03-01

There is an established link between food promotions and children's food purchase and consumption. Children in developing countries may be more vulnerable to food promotions given the relative novelty of advertising in these markets. This study aimed to determine the scope of television food advertising to children across the Asia-Pacific to inform policies to restrict this marketing. Six sites were sampled, including from China, Indonesia, Malaysia and South Korea. At each site, 192 h of television were recorded (4 days, 16 h/day, three channels) from May to October 2012. Advertised foods were categorized as core/healthy, non-core/unhealthy or miscellaneous, and by product type. Twenty-seven percent of advertisements were for food/beverages, and the most frequently advertised product was sugar-sweetened drinks. Rates of non-core food advertising were highest during viewing times most popular with children, when between 3 (South Korea) and 15 (Indonesia) non-core food advertisements were broadcast each hour. Children in the Asia-Pacific are exposed to high volumes of unhealthy food/beverage television advertising. Different policy arrangements for food advertising are likely to contribute to regional variations in advertising patterns. Cities with the lowest advertising rates can be identified as exemplars of good policy practice. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martino, C

The Department of Energy (DOE) recognizes the need for the characterization of High-Level Waste (HLW) saltcake in the Savannah River Site (SRS) F- and H-area tank farms to support upcoming salt processing activities. As part of the enhanced characterization efforts, Tank 25F will be sampled and the samples analyzed at the Savannah River National Laboratory (SRNL). This Task Technical and Quality Assurance Plan documents the planned activities for the physical, chemical, and radiological analysis of the Tank 25F saltcake core samples. This plan does not cover other characterization activities that do not involve core sample analysis and it does notmore » address issues regarding sampling or sample transportation. The objectives of this report are: (1) Provide information useful in projecting the composition of dissolved salt batches by quantifying important components (such as actinides, {sup 137}Cs, and {sup 90}Sr) on a per batch basis. This will assist in process selection for the treatment of salt batches and provide data for the validation of dissolution modeling. (2) Determine the properties of the heel resulting from dissolution of the bulk saltcake. Also note tendencies toward post-mixing precipitation. (3) Provide a basis for determining the number of samples needed for the characterization of future saltcake tanks. Gather information useful towards performing characterization in a manner that is more cost and time effective.« less

New sedimentary-core records and a recent co-seismic turbidite help to unravel the paleoseismicity of the Hikurangi Subduction Zone, New Zealand

NASA Astrophysics Data System (ADS)

Barnes, Philip; Orpin, Alan; Howarth, Jamie; Patton, Jason; Lamarche, Geoffroy; Woelz, Susanne; Hopkins, Jenni; Gerring, Peter; Mitchell, John; Quinn, Will; McKeown, Monique; Ganguly, Aratrika; Banks, Simon; Davidson, Sam

2017-04-01

The Hikurangi margin straddles the convergent boundary between the Pacific and Australia tectonic plates and is New Zealand's potentially largest earthquake and tsunami hazard. The 3000 m-deep Hikurangi Trough, off eastern Marlborough, Wairarapa, Hawkes Bay, and East Cape, marks the location where the Pacific plate is subducting beneath the eastern continental margin of the North Island and northeastern South Island. To date the Hikurangi margin has a short historical record relative to the recurrence of great earthquakes and tsunami, and consequently the associated hazard remains poorly constrained. In October 2016 a new, international, 5-year project commenced to evaluate the pre-historic earthquake history of the margin. In November 2016 a RV Tangaroa voyage acquired 50 sediment cores up to 5.5 m long from sites on the continental margin between the Kaikoura coast and Poverty Bay. Core sites were selected using available 30 kHz multibeam bathymetry and backscatter data, sub-bottom acoustic profiles, archived sediment samples, and results from numerical modelling of turbidity currents. Sites fell into three general categories: turbidite distributary systems; small isolated slope-basins; and Hikurangi Channel, levees, and trough. Typical of the margin, the terrigenous-dominated sequence included layers of gravel, sand, mud, and volcanic ash. Many of these layers are turbidites, some of which may have been triggered by strong shaking associated with earthquakes (subduction megathrust and other coastal faults). Some cores contain up to 25 individual turbidites. This library of turbidites may provide the basis of new paleoseismic records that span several hundred kilometres of strike along the plate boundary. During the voyage the 14th November 2016 (NZDT) Mw 7.8 Kaikoura Earthquake occurred, causing strong ground shaking beneath the Kaikoura Canyon region. Sampling with a multicorer within five days of the earthquake, we recovered what appeared to be a very recently emplaced, still-fluidised, co-seismic turbidite about 10-20 cm thick over a very large region offshore of Marlborough and Wairarapa. This event appears to extend at least 300 km from Kaikoura and offers a rare opportunity to calibrate our paleoseismic data and to test hypotheses of turbidite triggering and emplacement. Up to five cores detected this highly fluidised layer overlying the pre-earthquake seabed, clearly visible as an oxidised layer. Our sampling spanned channel, channel-levee, and basin floor environments. On-board observations indicated that the turbidite was still settling on the seabed and the boundary with the overlying water column was diffuse. Further laboratory characterisation of the stratigraphy, physical properties, and benthic assemblages along with radionuclide analyses will test this hypothesis further.

Activation of HIV-1 pre-mRNA 3' processing in vitro requires both an upstream element and TAR.

PubMed Central

Gilmartin, G M; Fleming, E S; Oetjen, J

1992-01-01

The architecture of the human immunodeficiency virus type 1 (HIV-1) genome presents an intriguing dilemma for the 3' processing of viral transcripts--to disregard a canonical 'core' poly(A) site processing signal present at the 5' end of the transcript and yet to utilize efficiently an identical signal that resides at the 3' end of the message. The choice of processing sites in HIV-1 appears to be influenced by two factors: (i) proximity to the cap site, and (ii) sequences upstream of the core poly(A) site. We now demonstrate that an in vivo-defined upstream element that resides within the U3 region, 76 nucleotides upstream of the AAUAAA hexamer, acts specifically to enhance 3' processing at the HIV-1 core poly(A) site in vitro. We furthermore show that efficient in vitro 3' processing requires the RNA stem-loop structure of TAR, which serves to juxtapose spatially the upstream element and the core poly(A) site. An analysis of the stability of 3' processing complexes formed at the HIV-1 poly(A) site in vitro suggests that the upstream element may function by increasing processing complex stability at the core poly(A) site. Images PMID:1425577

The Mount Logan (Yukon) Ice Cores: Preliminary Results

NASA Astrophysics Data System (ADS)

Fisher, D. A.

2004-05-01

Three ice cores were taken at different elevations on or near My Logan in the years 2001 and 2002. The summit core (PRCol) comes from the summit plateau ( 5340 masl, length 187 m to bedrock, mean temperature -29 C ) and was done by the Geological Survey of Canada. The NIPR group cored 210m on the flanks of the mountain at King Col (4200 masl mean temperature -16C) and the UNH group cored 20 km from the mountain at Eclipse "Dome" (3015 masl,length 345 m mean temperature -5C) . The three cores were done cooperatively by GSC, NIPR and UNH and cover nominally 30 ka, 1 ka and 2ka respectively . Located very close to the Gulf of Alaska these core records are thought to reflect the climate history of the Pacific Ocean and having three widely spaced elevations, the sites "see" different distances to different sources. The lowest site (Eclipse) has excellent seasonals but a very muted δ 18O history with no obvious little ice age, whereas the most recent 1ka of the PRCol summit sites contains two very large and sudden δ 18O and d (deuterium excess) shifts at 1850 AD and ~ 800 AD. The δ 18O shifts which happen from one year to the next are about 4 o/oo . The summit site (PRCol) δ 18O response is "backwards", ie the Little Ice Age δ 18O values are 4 o/oo more positive than recent ones. The PRCol δ 18O and d suggest that the source water can either be ëlocalí (Gulf of Alaska) or very distant (tropics) . The Eclipse site seems only to get the local water . A massive dust storm originating in central Asia (Gobi) in April 2001 dumped a visible layer all over the St Elias Mountains and this layer was sampled, to provide a calibration "Asian dust event". The satellite and isotoic signatures both agreed that Gobi was the source. The PRCol record covers the Holocene and well back into the ice age. The transition is defined by a sudden ECM shift on the flanks of a more gradual O18 shift. Acknowledgements. Logan consortium consists of : Geological Survey of Canada : Jocelyne Bourgeois, Mike Demuth, David Fisher, Roy Koerner,Chris Zdanowicz, James Zheng. University of Ottawa: Ian Clarke,Raphaelle Cardyn. National Institute of Polar Research (Japan): Kumiko Goto-Azuma University of New Hampshire: Cam Wake, Kaplan Yalcin. University of Maine: Karl Kreutz, Paul Mayewski, Erich Osterberg. Arctic Institute of North America: Gerald Holdsworth. University of Washington: Eric J. Steig, Summer B. Rupper. University of Copenhagen: Dorthe Dahl-Jensen. David Fisher is the presenter but many contributed to what is a joint preliminary offering.

Preliminary Micropaleontological Investigation of a Preserved, Late Pleistocene Cypress Forest on the Northern Gulf of Mexico Inner Shelf

NASA Astrophysics Data System (ADS)

Truong, J. T.; DeLong, K. L.; Bentley, S. J.; Xu, K.; Harley, G. L.; Reese, A.; Gonzalez, S.; Obelcz, J.; Caporaso, A.

2017-12-01

Exposed at the bottom of a trough 13 km offshore Orange Beach, AL on the Gulf of Mexico (GOM) shelf in 18 m water depth are exceptionally preserved in situ bald cypress (Taxodium distichum) stumps. Preserved seeds (T. distichum, Cephalanthus occidentalis, Hibiscus lasiocarpos, Liquidambar styraciflua) discovered in core catcher samples illustrate the exceptional preservation of the site. Woody debris samples have come back radiocarbon dead with an exception to samples located in the upper peat layer with 14C ages from 37,350-41,830 years BP. Optically stimulated luminescence and 14C dates, in combination with GOM eustatic sea level curves, suggest the forest was located 30 m above the paleoshoreline. How the forest remained preserved during subaerial exposure of the continental shelf through the Last Glacial Maximum lowstand until ensuing Holocene sea level transgression remains unknown. The R/V Coastal Profiler collected 7 vibracores from the study site in 2015 and an additional 11 in 2016. A single core (DF1) contains facies identified as the Holocene Mississippi-Alabama-Florida sand sheet, a transitional facies of interbedded sand and mud, and a basal floodplain facies in which the stumps reside. This study seeks to identify the location of the Pleistocene-Holocene unconformity and to assist in stratigraphy of the area. Foraminiferal assemblages found within the transitional facies are of a shallow marine environment that suggests Holocene in age. It is hypothesized that a pulse of sea level rise during Marine Isotope Stages 3-4 caused subsequent rapid aggradation of the paleovalley system allowing for preservation through >30 kyrs of subaerial exposure. One of the ultimate goals of this study is to serve as a guide for identification of other possible sites along the gulf coast.

Autigenic and Anthropogenic Uranium in the Marine Sediments of the Gulf of California in Front of Santa Rosalia Mining District

NASA Astrophysics Data System (ADS)

Choumiline, K.; Rodríguez-Figueroa, G.; Shumilin, E.; Sapozhnikov, D.

2007-05-01

To verify the possibilities of U enrichments in the marine sedimentary environment of the eastern sector of the central Gulf of Califoria (GC), eleven sediment cores were collected in front of the Santa Rosalia mining region, peninsula of Baja California. Uranium and some other trace element contents in sliced core layers, dried and homogenized, were determined using instrumental neutron activation analysis. Average total U contents in sediments of five cores collected in the open GC in front of Santa Rosalía at sites with water depths from 265 m to 1030 m and in the Guaymas Basin with 2019 m, ranged from 1.36±0.26 mg kg-1 (Guaymas Basin) to 9.31±3.03 mg kg-1 (SR63 core, depth 630 m). To distinguish non-lithogenic U from the lithogenic one, the normalization of total U contents to the concentrations of Sc in the samples was used. That because this element is a reliable indicator of crustal materials, mainly aluminosilicates in the marine sediments. The relative contribution of non-lithogenic (authigenic) U varied from 49.8±3 % (Guaymas Basin) to 84.2±8.2 % (SR62 core) of the total U content in the sediments of the open central GC. Surprisingly, in three sediment cores from the coastal zone adjacent to the town of Santa Rosalía in water depth range 3-6 m very high concentrations of total U were found, ranging from 54.2±7.3 mg kg-1 (SR4 core) to 110±13 mg kg-1 (SR2 core) and exceeding not only U average abundance in the earth´s crust (2.7 mg kg-1), but also its levels found for SR62 core, as well as those reported for natural enrichments of U in suboxic-anoxic environments, e.g. at Mexico and Peru margin sites (3.04 mg kg-1 - 24.54 mg kg-1, McManus et al., 2006). The relative contribution of non-lithogenic U in the sediments of these three anomalous cores varied from 97.2±0.4 % (SR4 core) to 98.80.2 % (SR1 and SR2 cores) of their total U content. The sediments were also depleted in organic C (0.05 % - 0.18 %), which is not typical for marine solid phases enriched in authigenic U. Additional surface sampling around the cores with high levels of U, helped to define the spatial distribution of this element, as well as Co, Cu, Zn, light lanthanides and europium, which also showed "anomalies". The association with anthropogenic impact is discussed because the geochemical fingerprints of these sediments are the same as for solid wastes of copper smelting, which has occurred in Santa Rosalía in the past century till 1984.

Pore-water extraction from unsaturated tuff by triaxial and one-dimensional compression methods, Nevada Test Site, Nevada

USGS Publications Warehouse

Mower, Timothy E.; Higgins, Jerry D.; Yang, In C.; Peters, Charles A.

1994-01-01

Study of the hydrologic system at Yucca Mountain, Nevada, requires the extraction of pore-water samples from welded and nonwelded, unsaturated tuffs. Two compression methods (triaxial compression and one-dimensional compression) were examined to develop a repeatable extraction technique and to investigate the effects of the extraction method on the original pore-fluid composition. A commercially available triaxial cell was modified to collect pore water expelled from tuff cores. The triaxial cell applied a maximum axial stress of 193 MPa and a maximum confining stress of 68 MPa. Results obtained from triaxial compression testing indicated that pore-water samples could be obtained from nonwelded tuff cores that had initial moisture contents as small as 13 percent (by weight of dry soil). Injection of nitrogen gas while the test core was held at the maximum axial stress caused expulsion of additional pore water and reduced the required initial moisture content from 13 to 11 percent. Experimental calculations, together with experience gained from testing moderately welded tuff cores, indicated that the triaxial cell used in this study could not apply adequate axial or confining stress to expel pore water from cores of densely welded tuffs. This concern led to the design, fabrication, and testing of a one-dimensional compression cell. The one-dimensional compression cell used in this study was constructed from hardened 4340-alloy and nickel-alloy steels and could apply a maximum axial stress of 552 MPa. The major components of the device include a corpus ring and sample sleeve to confine the sample, a piston and base platen to apply axial load, and drainage plates to transmit expelled water from the test core out of the cell. One-dimensional compression extracted pore water from nonwelded tuff cores that had initial moisture contents as small as 7.6 percent; pore water was expelled from densely welded tuff cores that had initial moisture contents as small as 7.7 percent. Injection of nitrogen gas at the maximum axial stress did not produce additional pore water from nonwelded tuff cores, but was critical to recovery of pore water from densely welded tuff cores. Gas injection reduced the required initial moisture content in welded tuff cores from 7.7 to 6.5 percent. Based on the mechanical ability of a pore-water extraction method to remove water from welded and nonwelded tuff cores, one-dimensional compression is a more effective extraction method than triaxial compression. However, because the effects that one-dimensional compression has on pore-water chemistry are not completely understood, additional testing will be needed to verify that this method is suitable for pore-water extraction from Yucca Mountain tuffs.

Isotopic (δ18O, δD and deuterium excess) records from the TALDICE ice core (East Antarctica) (Invited)

NASA Astrophysics Data System (ADS)

Stenni, B.; Buiron, D.; Masson-Delmotte, V.; Bonazza, M.; Braida, M.; Chappellaz, J.; Frezzotti, M.; Falourd, S.; Minster, B.; Selmo, E.

2010-12-01

Paleotemperature reconstructions from Antarctic ice cores rely mainly on δD and δ18O records and the main key factors controlling the observed distribution of δD and δ18O in Antarctic surface snow are mainly related to the condensation temperature of the precipitation and the origin of moisture. The deuterium excess, d = δD - 8*δ18O, contains information about climate conditions prevailing in the source regions of precipitation and can be used as an integrated tracer of past hydrological cycle changes. In the framework of the TALos Dome Ice CorE (TALDICE) project, a deep ice core (1620 m) has been drilled at Talos Dome, a peripheral dome of East Antarctica facing the Ross Sea, about 550 km north of Taylor Dome and 1100 km East from the EPICA Dome C drilling site. The TALDICE coring site (159°11'E 72°49'S; 2315 m; T -41°C; www.taldice.org) is located near the dome summit and is characterised by an annual snow accumulation rate of 80 mm water equivalent. Backtrajectory analyses suggest that Talos Dome is mainly influenced by air masses arriving both from the Pacific (Ross Sea) and Indian Ocean sectors. A preliminary dating based on an ice flow model and an inverse method suggests for the upper 1580 m an age of about 300,000 years BP. The full TALDICE δ18O record obtained from the bag samples as well as δD and deuterium excess data are presented here. The δ18O and δD measurements were carried out in Italy and France on a continuous basis of 1 m. These new records will be compared to the ones obtained from the EDC ice core as well as with other East Antarctic ice core records. In particular, we will focus on the whole isotopic profiles, in good agreement with other inland deep ice cores, and on the last deglaciation, showing climatic changes at Talos Dome in phase with the Antarctic plateau and suggesting that the bipolar see saw with Greenland temperature is also valid for this new coastal site facing the Ross Sea sector.

43 CFR 3593.1 - Core or test hole cores, samples, cuttings.

Code of Federal Regulations, 2014 CFR

2014-10-01

.... (d) When drilling on lands with potential for encountering high pressure oil, gas or geothermal... 43 Public Lands: Interior 2 2014-10-01 2014-10-01 false Core or test hole cores, samples, cuttings...) EXPLORATION AND MINING OPERATIONS Bore Holes and Samples § 3593.1 Core or test hole cores, samples, cuttings...

43 CFR 3593.1 - Core or test hole cores, samples, cuttings.

Code of Federal Regulations, 2012 CFR

2012-10-01

.... (d) When drilling on lands with potential for encountering high pressure oil, gas or geothermal... 43 Public Lands: Interior 2 2012-10-01 2012-10-01 false Core or test hole cores, samples, cuttings...) EXPLORATION AND MINING OPERATIONS Bore Holes and Samples § 3593.1 Core or test hole cores, samples, cuttings...

43 CFR 3593.1 - Core or test hole cores, samples, cuttings.

Code of Federal Regulations, 2013 CFR

2013-10-01

.... (d) When drilling on lands with potential for encountering high pressure oil, gas or geothermal... 43 Public Lands: Interior 2 2013-10-01 2013-10-01 false Core or test hole cores, samples, cuttings...) EXPLORATION AND MINING OPERATIONS Bore Holes and Samples § 3593.1 Core or test hole cores, samples, cuttings...

43 CFR 3593.1 - Core or test hole cores, samples, cuttings.

Code of Federal Regulations, 2011 CFR

2011-10-01

.... (d) When drilling on lands with potential for encountering high pressure oil, gas or geothermal... 43 Public Lands: Interior 2 2011-10-01 2011-10-01 false Core or test hole cores, samples, cuttings...) EXPLORATION AND MINING OPERATIONS Bore Holes and Samples § 3593.1 Core or test hole cores, samples, cuttings...

Upper Eocene Spherules at ODP Site 1090B

NASA Technical Reports Server (NTRS)

Liu, S.; Kyte, F. T.; Glass, B. P.; Gersonde, R.

2000-01-01

Our two labs independently discovered upper Eocene microtektites and microkrystites at ODP Site 1090, a new South Atlantic locality near the Agulhus Ridge. This is a significant new data point for the strewn fields of these spherules, which were recently extended into the Atlantic sector of the Southern Ocean when they were reported at ODP Site 689 on the Maude Rise. The microtektites have been regarded as related to North American tektites and the microkrystites as belonging to the clinopyroxene-bearing (cpx) spherule strewn field. Initial reports indicate that Site 1090 contains a complete sequence of upper Eocene sediments composed of diatom and nannofossil oozes. The magneto- and bio-stratigraphy indicate that impact-age sediments should occur in core 30X of Hole 1090B. One of us (FTK) took 2 cc samples at 10 cm intervals over 600 cm of core for Ir analyses and the senior author (SL) took 3 cc samples at 20 cm intervals to search for spherules. Both studies proved successful and additional samples were obtained to confirm initial results and better define the Ir anomaly and spherule abundances. Peak Ir concentrations of 0.97 ng/g were found at 1090B-30X-5, 105-106cm and 0.78 ng/g at 115-116 cm. Anomalous Ir concentrations (greater than 0.1 ng/g) extend over about 100 cm of core. Preliminary results indicate that the excess Ir at this site is about 25 ng per sq cm. About 380 microtektites (>63 pm) and 2492 microkrystites (>63 pm) were recovered over a 1.8 m interval with a peak abundance of microtektites (106/gram) and microkrystites (562/gram) at 1090B-30X- 5, 114-115 cm. The largest microtektite is approximately 960 x 1140 micron in size. About 55 % are spherical, and the rest are disc, cylinder, dumbbell, teardrop, or fragments. Most of the microtektites are transparent colorless, but a few are transparent pale brown or green. Preliminary data indicate that the microtektites at Site 1090 have similar major oxide compositions to those at Site 689. About 50% of the cpx spherules are spherical, the rest are fragments. They range from yellowish translucent to dark opaque. Based on stratigraphic data, occurrence of a positive Ir anomaly, and similar appearance and major oxide compositions of the Site 1090 spherules to those at Site 689, we believe that the spherule layer(s) are the same at both sites. However, there are significant differences between these two sites. At Site 689 the peak abundance of the cpx spherules is slightly below that of the microtektites. We can distinguish no such separation at Site 1090, despite a somewhat higher sediment accumulation rates. Peak Ir concentrations are about four times higher at Site 1090, resulting in a similarly higher total flux of Ir for this site compared to Site 689 on the Maude Rise. This is generally consistent with the flux of cpx spherules (greater than 63 pm) which is estimated to be approximately -2100 per sq cm, about twice that of Site 689D (1040 sq cm) and with the cpx-spherule component being a principal carrier of the Ir signal. The number of microtektites per sq cm (greater than 63 micron) is nearly the same at both sites, approximately 300 in 1090B and 280 in 689B. A decrease in the greater than 63 micron size fraction (consisting primarily of diatoms and radiolaria) is coincident with the spherule layer at both sites suggesting that the impact(s) that produced the spherule layer(s) may have had an adverse affect on the marine plankton.

Composition of Sediment Inputs to the Hikurangi Subduction Margin: A Prelude to IODP Expedition 375

NASA Astrophysics Data System (ADS)

Underwood, M.

2017-12-01

Expedition 375 of the International Ocean Discovery Program is scheduled to begin drilling offshore New Zealand in March 2018. Two sites will be cored seaward of the Hikurangi subduction front (subduction inputs), plus one site at the toe of the accretionary prism, and one site in the forearc above a zone of well-documented slow-slip events. One of the challenges during planning for Expedition 375 has been the total absence of pre-existing compositional data from the region; that lack of basic information impacts such tasks as mixing and analysis of appropriate standards for X-ray diffraction, error analysis, computation of accurate normalization factors, and QA/QC. To help overcome those deficiencies, I analyzed a total of 152 samples from ODP Sites 1123 (Quaternary to Eocene), 1124 (Quaternary to Cretaceous), and 1125 (Quaternary to Miocene), plus piston/gravity-core samples from the repositories at Lamont-Doherty, Oregon State, and NIWA. The results reveal an unusually large range of compositions for the bulk sediments. The relative abundance of total clay minerals ranges from 3 to 64 wt%. Quartz ranges from 0 to 39 wt%. Feldspar ranges from 0 to 40 wt%, and calcite ranges from 0 to 93 wt%. Samples from the Hikurangi Plateau and Chatham Rise are carbonate-rich, with many bordering on almost-pure nannofossil chalk. Hemipelagic muds from the floor of Hikurangi Trough, Ruatoria slide, and the landward slope of the trench are fairly uniform, with averages of 36 wt% total clay minerals, 27 wt% quartz, 24 wt% feldspar, and 13 wt% calcite. Unlike many other subduction zones, this diversity of lithologies will save shipboard scientists from repetitive, mind-numbing descriptions and analyses, and shorebased experiments for frictional properties, permeability, and consolidation will need to pay close attention to the compositional attributes of the specimens. In addition, results from the four IODP boreholes can be interpreted within a broader, regional-scale framework of sediment provenance and dispersal.

Preliminary Use of Uric Acid as a Biomarker for Wading Birds on Everglades Tree Islands, Florida, United States

USGS Publications Warehouse

Bates, Anne L.; Orem, William H.; Newman, Susan; Gawlik, Dale E.; Lerch, Harry E.; Corum, Margo D.; Van Winkle, Monica

2010-01-01

Concentrations of organic biomarkers and concentrations of phosphorus in soil cores can potentially be used as proxies for historic population densities of wading birds on tree islands in the Florida Everglades. This report focuses on establishing a link between the organic biomarker uric acid found in wading bird guano and the high phosphorus concentrations in tree island soils in the Florida Everglades. Uric acid was determined in soil core sections, in surface samples, and in bird guano by using a method of high-performance liquid chromatography-mass spectrometry (HPLC-MS) developed for this purpose. Preliminary results show an overall correlation between uric acid and total phosphorus in three soil cores, with a general trend of decreasing concentrations of both uric acid and phosphorus with depth. However, we have also found no uric acid in a soil core having high concentrations of phosphorus. We believe that this result may be explained by different geochemical circumstances at that site.

New radiocarbon ages from cirques in Colorado Front Range

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davis, P.T.; Birkeland, P.W.; Caine, N.

The authors recovered sediment cores 3.1 m long from Blue Lake ([approximately]37m water depth, [approximately]3,445m a.s.l., 40[degree]5 minutes 20 seconds N, 105[degree]37 minutes 08 seconds W) and 2.7m long from Lake Dorothy ([approximately]35m water depth, [approximately]3,675m a.s.l., 40[degree]00 minutes 46 seconds N, 105[degree]41 minutes 11 seconds W). A light-weight percussion coring system suspended from perlon ropes was used because of sediment thicknesses, water depths, and ski-backpacking requirements. Lake ice provided a stable coring platform. One purpose of the project is provision of a high-resolution record of environmental change in the subalpine/alpine ecotone during the Holocene, under the auspices of themore » Niwot Ridge Long-Term Ecological Research program. The sediment cores also provide minimum-limiting radiocarbon ages for deglaciation of cirques and the deposits that impound their tarns. Here the authors report on this second purpose. The Blue Lake core bottomed in sandy, gray, inorganic sediment, presumably glacial diamict. A bulk sample from 2.8--2.9m depth yielded a conventional radiocarbon age of 12,275[+-]345 yrs BP. Thus, ice retreated from the site by 12 ka. Since 12 ka both glacial and rock-glacial sediments have been deposited upvalley; some of these events may be recognized in the core. In contrast, the Lake Dorothy core did not penetrate gray inorganic diamict and is entirely organic-rich. A bulk sample from 2.65--2.7m depth yielded a conventional radiocarbon age of 10,910 [+-] 320 yrs BP. Thus, the moraines impounding the lake are 2--3 times older than suggested by a combination of relative-age methods and one radiocarbon age from surface sediments.« less

Transport of Organic Contaminants Mobilized from Coal through Sandstone Overlying a Geological Carbon Sequestration Reservoir

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhong, Lirong; Cantrell, Kirk J.; Bacon, Diana H.

2014-02-01

Column experiments were conducted using a wetted sandstone rock installed in a tri-axial core holder to study the flow and transport of organic compounds mobilized by scCO2 under simulated geologic carbon storage (GCS) conditions. The sandstone rock was collected from a formation overlying a deep saline reservoir at a GCS demonstration site. Rock core effluent pressures were set at 0, 500, or 1000 psig and the core temperature was set at 20 or 50°C to simulate the transport to different subsurface depths. The concentrations of the organic compounds in the column effluent and their distribution within the sandstone core weremore » monitored. Results indicate that the mobility though the core sample was much higher for BTEX compounds than for naphthalene. Retention of organic compounds from the vapor phase to the core appeared to be primarily controlled by partitioning from the vapor phase to the aqueous phase. Adsorption to the surfaces of the wetted sandstone was also significant for naphthalene. Reduced temperature and elevated pressure resulted in greater partitioning of the mobilized organic contaminants into the water phase.« less

Paleoseismic events inferred from marine seismogenic turbidites of the eastern Nankai Trough

NASA Astrophysics Data System (ADS)

Okutsu, N.; Ashi, J.; Omura, A.; Yamaguchi, A.; Suganuma, Y.; Kanamatsu, T.; Murayama, M.

2016-12-01

Paleoseismology using marine seismogenic turbidites is a developing field especially in subduction margins. However, very fine-grained turbidites are difficult to distinguish from hemipelagic mud. The primary focus of this study is to understand the characteristics of the muddy turbidites. The second focus is to discuss the muddy turbidites distributions and their ages from a longer sediment core, and understand the paleoseismic records of eastern Nankai Trough, Japan. The samples used in this study include multiple cores and a piston core which were collected from the sedimentary basin southwest off Kii Peninsula during the R/V Shinsei Maru KS-14-8 cruise. The sampling site is located at the ENE-WSW elongated basin between the accretionary prism and the forearc basin off Kumano without terrestrial sediment supply. The basin exhibits a terminal basin that captures all sediments supplied from outside. From the multiple core samples, the Cs-137 and Pb- 210 concentration distribution indicates that the muddy sediment layer in the upper 17 cm was formed from the 2004 off the Kii Peninsula earthquake. Visual observation and X-ray CT scans were conducted alongside other measurements for anisotropy of magnetic susceptibility (AMS), paleomagnetism, rock magnetism, electrical resistivity, and X-ray fluorescence core scanning (XRF). Muddy seismogenic turbidites associated with the 2004 off the Kii Peninsula earthquake have thick homogeneous clay layer above the silty lamination. The magnetic susceptibility decreases upwards in the lamination. This specific feature is thought to have formed as the muddy turbiditity current slowly decelerated and slowly settled down the slope. From the results of XRF core scanning, Ca and Fe have a peak at basement of turbidites, and decrease upwards. Ca is thought to correspond to amount of the foraminiferas. In piston core, we observed the same sedimentary and magnetic characteristics as the multiple cores. Based on stratigraphic information from volcanic ash and radiocarbon age of the foraminifera, intercalation pattern of muddy turbidite layers almost consistent with the known past earthquake recurrence times in the Nankai subduction margin. Reversed age recognized beneath the thick turbidite layer suggests reworking of landslide deposits probably due to the strong shaking.

Variability in Time and Space of Meloidogyne incognita Fall Population Density in Cotton Fields

PubMed Central

Wheeler, Terry A.; Baugh, Brant; Kaufman, Harold; Schuster, Greta; Siders, Kerry

2000-01-01

Three cotton fields infested with Meloidogyne incognita were intensively sampled in the fall for 3 years (1996 to 1998) to determine if intensive sampling for M. incognita, for which spatial location is important, was necessary every year in a continuous cotton system. Two composite soil samples (20 cores each), taken over an area covering one-third of the field length and two rows wide, were averaged to represent that area (row-location combination). Each field (except one) had 24 areas assayed for changes in M. incognita population density (Pf) over a 3-year period. At all three sites, Pf was higher during fall 1998 than fall 1996. There were no differences in Pf between rows within a year or between years (no. row × year interaction) at any of the sites. At all three sites, there was a consistent difference each year in Pf among locations in a field (no. year × location interaction). At each area, M. incognital/500 cm³ was labeled for one of four Pf classes: <250, 250 to 999, 1,000 to 2,499, and ≥ 2,500. Management of root-knot nematode would likely be altered as classification changed. The areas that were reclassified by two classes or more after 1 and 2 years ranged from 0 to 29% and 25 to 54%, respectively. The risk of underestimating Pf of M. incognita was higher in one site 2 years after the initial intensive sampling procedure, whereas in another site there was little change in Pf 2 years after initial sampling. Sampling frequency will need to be decided on a field-by-field basis. PMID:19270975

Socket Preservation using Enzyme-treated Equine Bone Granules and an Equine Collagen Matrix: A Case Report with Histological and Histomorphometrical Assessment.

PubMed

Leonida, Alessandro; Todeschini, Giovanni; Lomartire, Giovanni; Cinci, Lorenzo; Pieri, Laura

2016-11-01

To histologically assess the effectiveness of a socket-preservation technique using enzyme-treated equine bone granules as a bone-graft material in combination with an equine collagen matrix as a scaffold for soft-tissue regeneration. Enzyme-treated equine bone granules and equine collagen matrix recently have been developed to help overcome alveolar bone deficiencies that develop in the wake of edentulism. The patient had one mandibular molar extracted and the socket grafted with equine bone granules. The graft was covered with the equine collagen matrix, placed in a double layer. No flap was prepared, and the gingival margins were stabilized with a single stitch, leaving the matrix partially exposed and the site to heal by secondary intention. The adjacent molar was extracted 1 month later, and that socket was left to heal by secondary intention without any further treatment. Three months after each surgery, an implant was placed and a biopsy was collected. The two biopsies underwent histological processing and qualitative evaluation. Histomorphometric analysis was also performed to calculate the percentage of newly formed bone (NFB) in the two cores. Healing at both sites was uneventful, and no inflammation or other adverse reactions were observed in the samples. Soft-tissue healing by secondary intention appeared to occur faster at the grafted site. The corresponding core showed a marked separation between soft and hard tissue that was not observed in the core from the nongrafted site, where soft-tissue hypertrophy could be observed. Newly formed bone at the grafted and nongrafted sites was not significantly different (27.2 ± 7.1 and 29.4 ± 6.2% respectively, p = 0.45). The surgical technique employed in this case appeared to facilitate postextraction soft-tissue healing by second intention and simplify soft-tissue management. Using a collagen-based matrix to cover a postextraction grafted site may facilitate second intention soft-tissue healing and proper soft-tissue growth.

Accessible or Inaccessible? Diagnostic Efficacy of CT-Guided Core Biopsies of Head and Neck Masses

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cunningham, Jane D., E-mail: janecunningham0708@gmail.com; McCusker, Mark W.; Power, Sarah

PurposeTissue sampling of lesions in the head and neck is challenging due to complex regional anatomy and sometimes necessitates open surgical biopsy. However, many patients are poor surgical candidates due to comorbidity. Thus, we evaluated the use of CT guidance for establishing histopathological diagnosis of head and neck masses.MethodsAll consecutive patients (n = 22) who underwent CT-guided core biopsy of head or neck masses between April 2009 and August 2012 were retrospectively reviewed using the departmental CT interventional procedures database. The indication for each biopsy performed was to establish or exclude a diagnosis of neoplasia in patients with suspicious head or neckmore » lesions found on clinical examination or imaging studies. Patients received conscious sedation and 18 G, semiautomated core needle biopsies were performed by experienced neuroradiologists using 16-slice multidetector row CT imaging guidance (Somatom Definition Siemens Medical Solutions, Germany). Histopathology results of each biopsy were analysed.ResultsSixteen of 22 biopsies that were performed (73 %) yielded a pathological diagnosis. Anatomic locations biopsied included: masticator (n = 7), parapharyngeal (n = 3), parotid (n = 3), carotid (n = 3), perivertebral (n = 3), pharyngeal (n = 2), and retropharyngeal (n = 1) spaces. Six biopsies (27 %) were nondiagnostic due to inadequate tissue sampling, particularly small biopsy sample size and failure to biopsy the true sampling site due to extensive necrosis. No major complications were encountered.ConclusionsThe use of CT guidance to perform core biopsies of head and neck masses is an effective means of establishing histopathological diagnosis and reduces the need for diagnostic open surgical biopsy and general anaesthesia.« less

Core descriptions, core photographs, physical property logs and surface textural data of sediment cores recovered from the continental shelf of the Monterey Bay National Marine Sanctuary during the research cruises M-1-95-MB, P-2-95-MB, and P-1-97-MB

USGS Publications Warehouse

Orzech, Kevin M.; Dahl, Wendy E.; Edwards, Brian D.

2001-01-01

In response to the 1992 creation of the Monterey Bay National Marine Sanctuary (MBNMS), the United States Geological Survey (USGS) initiated a multiyear investigation of the Sanctuary continental margin. As part of the investigative effort, this report summarizes the shipboard procedures, subsequent laboratory analyses, and data results from three seafloor sampling cruises conducted on the continental shelf between Monterey peninsula, CA and San Francisco, CA. The cruises were conducted in 1995 aboard the NOAA Ship McArthur (M-1-95-MB) and in 1995 and 1997 aboard the R/V Point Sur (P-2-95-MB and P-1-97-MB). Scientists and representatives from the Environmental Protection Agency (EPA), the National Oceanic and Atmospheric Administration (NOAA), the California Department of Fish and Game (CDFG), the University of California Santa Cruz (UCSC), and the San Jose State University Moss Landing Marine Laboratory (SJSU-MLML) supported the research effort. In this report we present sediment descriptions, sediment textural data, physical property logs, station metadata, and photographs of subcores from a total of three hundred and eighty four sample stations. At these sites either a box corer, MultiCore™r, grab sampler or a combination of these sampling devices were used to collect the sea floor sediments. The report is presented in an interactive web-based format with each mapped core station linked to the corresponding description and photo, and to a spreadsheet of surface texture and other sampling data.

Reconstruction of in-situ porosity and porewater compositions of low-permeability crystalline rocks: Magnitude of artefacts induced by drilling and sample recovery

NASA Astrophysics Data System (ADS)

Meier, D. B.; Waber, H. N.; Gimmi, T.; Eichinger, F.; Diamond, L. W.

2015-12-01

Geological site characterisation programmes typically rely on drill cores for direct information on subsurface rocks. However, porosity, transport properties and porewater composition measured on drill cores can deviate from in-situ values due to two main artefacts caused by drilling and sample recovery: (1) mechanical disruption that increases porosity and (2) contamination of the porewater by drilling fluid. We investigated the effect and magnitude of these perturbations on large drill core samples (12-20 cm long, 5 cm diameter) of high-grade, granitic gneisses obtained from 350 to 600 m depth in a borehole on Olkiluoto Island (SW Finland). The drilling fluid was traced with sodium-iodide. By combining out-diffusion experiments, gravimetry, UV-microscopy and iodide mass balance calculations, we successfully quantified the magnitudes of the artefacts: 2-6% increase in porosity relative to the bulk connected porosity and 0.9 to 8.9 vol.% contamination by drilling fluid. The spatial distribution of the drilling-induced perturbations was revealed by numerical simulations of 2D diffusion matched to the experimental data. This showed that the rims of the samples have a mechanically disrupted zone 0.04 to 0.22 cm wide, characterised by faster transport properties compared to the undisturbed centre (1.8 to 7.7 times higher pore diffusion coefficient). Chemical contamination was shown to affect an even wider zone in all samples, ranging from 0.15 to 0.60 cm, in which iodide enrichment was up to 180 mg/kgwater, compared to 0.5 mg/kgwater in the uncontaminated centre. For all samples in the present case study, it turned out that the magnitude of the artefacts caused by drilling and sample recovery is so small that no correction is required for their effects. Therefore, the standard laboratory measurements of porosity, transport properties and porewater composition can be taken as valid in-situ estimates. However, it is clear that the magnitudes strongly depend on site- and drilling-specific factors and therefore our results cannot be transferred simply to other locations. We recommend the approach presented in this study as a route to obtain reliable values in future drilling campaigns aimed at characterising in-situ bedrock properties.

Reconstruction of in-situ porosity and porewater compositions of low-permeability crystalline rocks: Magnitude of artefacts induced by drilling and sample recovery.

PubMed

Meier, D B; Waber, H N; Gimmi, T; Eichinger, F; Diamond, L W

2015-12-01

Geological site characterisation programmes typically rely on drill cores for direct information on subsurface rocks. However, porosity, transport properties and porewater composition measured on drill cores can deviate from in-situ values due to two main artefacts caused by drilling and sample recovery: (1) mechanical disruption that increases porosity and (2) contamination of the porewater by drilling fluid. We investigated the effect and magnitude of these perturbations on large drill core samples (12-20 cm long, 5 cm diameter) of high-grade, granitic gneisses obtained from 350 to 600 m depth in a borehole on Olkiluoto Island (SW Finland). The drilling fluid was traced with sodium-iodide. By combining out-diffusion experiments, gravimetry, UV-microscopy and iodide mass balance calculations, we successfully quantified the magnitudes of the artefacts: 2-6% increase in porosity relative to the bulk connected porosity and 0.9 to 8.9 vol.% contamination by drilling fluid. The spatial distribution of the drilling-induced perturbations was revealed by numerical simulations of 2D diffusion matched to the experimental data. This showed that the rims of the samples have a mechanically disrupted zone 0.04 to 0.22 cm wide, characterised by faster transport properties compared to the undisturbed centre (1.8 to 7.7 times higher pore diffusion coefficient). Chemical contamination was shown to affect an even wider zone in all samples, ranging from 0.15 to 0.60 cm, in which iodide enrichment was up to 180 mg/kg water, compared to 0.5 mg/kg water in the uncontaminated centre. For all samples in the present case study, it turned out that the magnitude of the artefacts caused by drilling and sample recovery is so small that no correction is required for their effects. Therefore, the standard laboratory measurements of porosity, transport properties and porewater composition can be taken as valid in-situ estimates. However, it is clear that the magnitudes strongly depend on site- and drilling-specific factors and therefore our results cannot be transferred simply to other locations. We recommend the approach presented in this study as a route to obtain reliable values in future drilling campaigns aimed at characterising in-situ bedrock properties. Copyright © 2015 Elsevier B.V. All rights reserved.

Hydrologic data for Leviathan Mine and vicinity, Alpine County, California, 1981-83

USGS Publications Warehouse

Hammermeister, D.P.; Walmsley, S.J.

1985-01-01

The U.S. Geological Survey collected basic hydrologic and water-quality data during 1981-83 to facilitate the geohydrologic evaluation of the Leviathan Mine area and the design of a pollution-abatement project. Surface-water field data included one or more measurements of pH, water temperature, and specific conductance at 45 sites in and adjacent to the mine area. At nine of these sites, daily data on discharge, specific conductance, and water temperature were collected during parts of 1981-82 by using electronic monitor-recorder systems. Ground-water field data included one or more of the water-quality measurements listed above at 71 piezometers in the mine area. Borehole geophysical data included neutron-moisture, neutron-porosity, gamma-gamma density, natural gamma, and temperature logs at three sites. Mineralogic and hydrologic data were obtained for cores taken from nine test holes. One or more surface-water samples from 26 sites were analyzed for major cations, major anions, and a wide range of minor inorganic constituents. Single ground-water samples from 36 piezometers were analyzed for the same array of major and minor constituents. (USGS)

Reconnaissance of Soil, Ground Water, and Plant Contamination at an Abandoned Oilfield-Service Site near Shawnee, Oklahoma, 2005-2006

USGS Publications Warehouse

Mashburn, Shana L.; Smith, S. Jerrod

2007-01-01

The U.S. Geological Survey, in cooperation with the Absentee Shawnee Tribe of Oklahoma, began a reconnaissance study of a site in Pottawatomie County, Oklahoma, in 2005 by testing soil, shallow ground water, and plant material for the presence of trace elements and semivolatile organic compounds. Chemical analysis of plant material at the site was investigated as a preliminary tool to determine the extent of contamination at the site. Thirty soil samples were collected from 15 soil cores during October 2005 and analyzed for trace elements and semivolatile organic compounds. Five small-diameter, polyvinyl-chloride-cased wells were installed and ground-water samples were collected during December 2005 and May 2006 and analyzed for trace elements and semivolatile organic compounds. Thirty Johnsongrass samples and 16 Coralberry samples were collected during September 2005 and analyzed for 53 constituents, including trace elements. Results of the soil, ground-water, and plant data indicate that the areas of trace element and semivolatile organic compound contamination are located in the shallow (A-horizon) soils near the threading barn. Most of the trace-element concentrations in the soils on the study site were either similar to or less than trace-element concentrations in background soils. Several trace elements and semivolatile organic compounds exceeded the U.S. Environmental Protection Agency, Region 6, Human Health Medium-Specific Screening Levels 2007 for Tap Water, Residential Soils, Industrial Indoor Soils, and Industrial Outdoor Soils. There was little or no correlation between the plant and soil sample concentrations and the plant and ground-water concentrations based on the current sample size and study design. The lack of correlation between trace-element concentrations in plants and soils, and plants and ground water indicate that plant sampling was not useful as a preliminary tool to assess contamination at the study site.

A new set-up for simultaneous high-precision measurements of CO2, δ13C-CO2 and δ18O-CO2 on small ice core samples

NASA Astrophysics Data System (ADS)

Jenk, Theo Manuel; Rubino, Mauro; Etheridge, David; Ciobanu, Viorela Gabriela; Blunier, Thomas

2016-08-01

Palaeoatmospheric records of carbon dioxide and its stable carbon isotope composition (δ13C) obtained from polar ice cores provide important constraints on the natural variability of the carbon cycle. However, the measurements are both analytically challenging and time-consuming; thus only data exist from a limited number of sampling sites and time periods. Additional analytical resources with high analytical precision and throughput are thus desirable to extend the existing datasets. Moreover, consistent measurements derived by independent laboratories and a variety of analytical systems help to further increase confidence in the global CO2 palaeo-reconstructions. Here, we describe our new set-up for simultaneous measurements of atmospheric CO2 mixing ratios and atmospheric δ13C and δ18O-CO2 in air extracted from ice core samples. The centrepiece of the system is a newly designed needle cracker for the mechanical release of air entrapped in ice core samples of 8-13 g operated at -45 °C. The small sample size allows for high resolution and replicate sampling schemes. In our method, CO2 is cryogenically and chromatographically separated from the bulk air and its isotopic composition subsequently determined by continuous flow isotope ratio mass spectrometry (IRMS). In combination with thermal conductivity measurement of the bulk air, the CO2 mixing ratio is calculated. The analytical precision determined from standard air sample measurements over ice is ±1.9 ppm for CO2 and ±0.09 ‰ for δ13C. In a laboratory intercomparison study with CSIRO (Aspendale, Australia), good agreement between CO2 and δ13C results is found for Law Dome ice core samples. Replicate analysis of these samples resulted in a pooled standard deviation of 2.0 ppm for CO2 and 0.11 ‰ for δ13C. These numbers are good, though they are rather conservative estimates of the overall analytical precision achieved for single ice sample measurements. Facilitated by the small sample requirement, replicate measurements are feasible, allowing the method precision to be improved potentially. Further, new analytical approaches are introduced for the accurate correction of the procedural blank and for a consistent detection of measurement outliers, which is based on δ18O-CO2 and the exchange of oxygen between CO2 and the surrounding ice (H2O).

The response of excess 230Th and extraterrestrial 3He to sediment redistribution at the Blake Ridge, western North Atlantic

NASA Astrophysics Data System (ADS)

McGee, David; Marcantonio, Franco; McManus, Jerry F.; Winckler, Gisela

2010-10-01

The constant-flux proxies excess 230Th ( 230Th xs) and extraterrestrial 3He ( 3He ET) are commonly used to calculate sedimentary mass accumulation rates and to quantify lateral advection of sediment at core sites. In settings with significant lateral input or removal of sediment, these calculations depend on the assumption that concentrations of 230Th xs and 3He ET are the same in both advected sediment and sediment falling through the water column above the core site. Sediment redistribution is known to fractionate grain sizes, preferentially transporting fine grains; though relatively few studies have examined the grain size distribution of 230Th xs and 3He ET, presently available data indicate that both are concentrated in fine grains, suggesting that fractionation during advection may bias accumulation rate and lateral advection estimates based on these proxies. In this study, we evaluate the behavior of 230Th xs and 3He ET in Holocene and last glacial samples from two cores from the Blake Ridge, a drift deposit in the western North Atlantic. At the end of the last glacial period, both cores received large amounts of laterally transported sediment enriched in fine-grained material. We find that accumulation rates calculated by normalization to 230Th and 3He are internally consistent despite large spatial and temporal differences in sediment advection. Our analyses of grain size fractions indicate that ~ 70% of 3He ET-bearing grains are in the < 20 μm fraction, with roughly equal amounts in the < 4 and 4-20 μm fractions. 230Th xs is concentrated in <4-μm grains relative to 4- to 20-μm grains by approximately a factor of 2 in Holocene samples and by a much larger factor (averaging a factor of 10) in glacial samples. Despite these enrichments of both constant-flux proxies in fine particles, the fidelity of 230Th- and 3He-based accumulation rate estimates appears to be preserved even in settings with extreme sediment redistribution, perhaps due to the cohesive behavior of fine particles in marine settings.

Characterization of methane-hydrate formation inferred from insitu Vp-density relationship for hydrate-bearing sediment cores obtained off the eastern coast of India

NASA Astrophysics Data System (ADS)

Kinoshita, M.; Hamada, Y.; Hirose, T.; Yamada, Y.

2017-12-01

In 2015, the Indian National Gas Hydrate Program (NGHP) Drilling Expedition 02 was carried out off the eastern margin of the Indian Peninsula in order to investigate distribution and occurrence of gas hydrates. From 25 drill sites, downhole logging data, cored samples, and drilling performance data were collected. One of the target areas (area B) is located on the axial and flank of an anticline, where the BSR is identified 100 m beneath the summit of anticline. 3 sites were drilled in the crest. The lower potential hydrate zone II was suggested by downhole logging (LWD) at 270-290 m below seafloor across the top of anticline. Core samples from this interval is characterized by a higher natural gamma radiation, gamma-ray-based higher bulk density and lower porosity, and higher electrical resistivity. All these features are in good agreement with LWD results. During this expedition, numerous special core sampling operations (PCAT) were carried out, keeping its insitu pressure in a pressure-tight vessel. They enabled acquiring insitu P-wave velocity and gamma-ray attenuation density measurements. In-situ X-CT images exhibit very clear hydrate distribution as lower density patches. Hydrate-bearing sediments exhibit a Vp-density trend that is clearly different from the ordinary formation. Vp values are significantly higher than 2 km/s whereas the density remains constant at 2-2.2 g/cm3 in hydrate zones. At some hydrate-bearing sediments, we noticed that Vp is negatively correlated to the density in the deeper portion (235-285 mbsf). On the other hand, in the shallower portion they are positively correlated. From lithostratigraphy the shallower portion consists of sand, whereas deeper portion are silty-clay dominant. We infer that the sand-dominant, shallower hydrate is a pore-filling type, and Vp is correlated positively to density. On the other hand, the clay-dominant, deeper hydrate is filled in vertical veins, and Vp is negatively correlated to density. Negative correlation may be explained by a (partial) replacement of pore water with hydrate because the density of hydrate is lower than the water.

Spatial and overwinter changes in clam populations of San Pablo Bay, a semiarid estuary with highly variable freshwater inflow

USGS Publications Warehouse

Poulton, V.K.; Lovvorn, J.R.; Takekawa, John Y.

2004-01-01

In many estuaries worldwide, climate trends together with human diversion of fresh water have dramatically impacted the benthos. Such impacts have sometimes been complicated by exotic species, whose invasion and persistence can be mediated by wide variations in freshwater inflow. Monitoring such changes usually involves periodic samples at a few sites; but sampling that does not recognize variation at a range of spatial and seasonal scales may not reveal important benthic trends. San Pablo Bay, in northern San Francisco Bay, has extreme fluctuations in freshwater inflow. This bay also experienced a major benthic change with introduction of the Asian clam (Potamocorbula amurensis) in 1986. This species initially displaced the former community, but later appeared to vary in abundance depending on site and freshwater inflow. To investigate such patterns and provide guidelines for research and monitoring, we took 1746 core samples at six sites around San Pablo Bay from 19 October to 17 December 1999 and from 6 March to 19 April 2000. Most biomass consisted of the clams P. amurensis,Macoma balthica and Mya arenaria. Potamocorbula amurensis dominated the benthos at most sites in the fall and recruited a new cohort during winter, while there was weak recruitment in M. balthica and none in M. arenaria. At most but not all sites, densities of P. amurensis and M. arenaria declined dramatically over winter while M. balthica declined only slightly. The dominant clams had patch diameters >5 m at most but not all sites, and some showed inconsistent patch structure at scales of 100–1400 m. In this semiarid estuary with highly variable freshwater inflow, samples for research and monitoring should include multiple sites and seasons, and samples within sites should be ≥5 m apart to account for between-patch variation. Species abundance in winter 1999–2000 appeared to be affected by high freshwater inflows in 1997–1999, while spatial patterns were probably most affected by post-settlement dispersal and mortality.

Coring Sample Acquisition Tool

NASA Technical Reports Server (NTRS)

Haddad, Nicolas E.; Murray, Saben D.; Walkemeyer, Phillip E.; Badescu, Mircea; Sherrit, Stewart; Bao, Xiaoqi; Kriechbaum, Kristopher L.; Richardson, Megan; Klein, Kerry J.

2012-01-01

A sample acquisition tool (SAT) has been developed that can be used autonomously to sample drill and capture rock cores. The tool is designed to accommodate core transfer using a sample tube to the IMSAH (integrated Mars sample acquisition and handling) SHEC (sample handling, encapsulation, and containerization) without ever touching the pristine core sample in the transfer process.

Sediment redistribution and grainsize effects on 230Th-normalized mass accumulation rates and focusing factors in the Panama Basin

NASA Astrophysics Data System (ADS)

Loveley, Matthew R.; Marcantonio, Franco; Lyle, Mitchell; Ibrahim, Rami; Hertzberg, Jennifer E.; Schmidt, Matthew W.

2017-12-01

Here, we examine how redistribution of differing grain sizes by sediment focusing processes in Panama Basin sediments affects the use of 230Th as a constant-flux proxy. We study representative sediments of Holocene and Last Glacial Maximum (LGM) time slices from four sediment cores from two different localities close to the ridges that bound the Panama Basin. Each locality contains paired sites that are seismically interpreted to have undergone extremes in sediment redistribution, i.e., focused versus winnowed sites. Both Holocene and LGM samples from sites where winnowing has occurred contain significant amounts (up to 50%) of the 230Th within the >63 μm grain size fraction, which makes up 40-70% of the bulk sediment analyzed. For sites where focusing has occurred, Holocene and LGM samples contain the greatest amounts of 230Th (up to 49%) in the finest grain-sized fraction (<4 μm), which makes up 26-40% of the bulk sediment analyzed. There are slight underestimations of 230Th-derived mass accumulation rates (MARs) and overestimations of 230Th-derived focusing factors at focused sites, while the opposite is true for winnowed sites. Corrections made using a model by Kretschmer et al. (2010) suggest a maximum change of about 30% in 230Th-derived MARs and focusing factors at focused sites, except for our most focused site which requires an approximate 70% correction in one sample. Our 230Th-corrected 232Th flux results suggest that the boundary between hemipelagically- and pelagically-derived sediments falls between 350 and 600 km from the continental margin.

Phosphorus and greenhouse gas dynamics in a drained calcareous wetland soil in Minnesota.

PubMed

Berryman, Erin M; Venterea, Rodney T; Baker, John M; Bloom, Paul R; Elf, Brandy

2009-01-01

Restoration of wetland hydrology can produce ecological benefits but may have unintended consequences. We examined effects of altered water level on release of dissolved reactive phosphorus (DRP) and greenhouse gases (GHG) in soil cores from a marsh being evaluated for restoration. We also measured field concentrations of DRP and other constituents in wetland porewater. Intact cores from a sampling location with higher Fe and lower calcium carbonate (CaCO(3)) contents released more DRP than another location, and displayed higher DRP under completely saturated compared to partly drained conditions. Porewater samples collected from the high-Fe location also contained higher DRP levels. Chemical data suggest that redox-driven reactions largely controlled DRP levels at the high-Fe site, while CaCO(3) adsorption was more important at the low-Fe site. Over the long term, water table elevation may attenuate P draining from the wetland due to decreased mineralization. However, such measures may increase P release in the short term. Raising the water level in soil cores resulted in decreased nitrous oxide (N(2)O) emissions, increased methane (CH(4)) emissions, and an overall increase in total global warming potential (GWP). The proportion of total GWP contributed by N(2)O decreased from 14% to < or = 1% as water level was raised, while the proportion contributed by CH(4) increased from 10 to 20% to 60 to 80%. Restoration of hydrology in the Rice Lake wetland has the potential to affect both local water quality and global air quality. These combined effects complicate the cost-to-benefit analysis of such wetland restoration efforts.

Non-destructive sampling of a comet

NASA Astrophysics Data System (ADS)

Jessberger, H. L.; Kotthaus, M.

1991-04-01

Various conditions which must be met for the development of a nondestructive sampling and acquisition system are outlined and the development of a new robotic sampling system suited for use on a cometary surface is briefly discussed. The Rosetta mission of ESA will take samples of a comet nucleus and return both core and volatile samples to earth. Various considerations which must be taken into account for such a project are examined including the identification of design parameters for sample quality; the identification of the most probable site conditions; the development of a sample acquisition system with respect to these conditions; the production of model materials and model conditions; and the investigation of the relevant material properties. An adequate sampling system should also be designed and built, including various tools, and the system should be tested under simulated cometary conditions.

Ice core carbonyl sulfide measurements from a new South Pole ice core (SPICECORE)

NASA Astrophysics Data System (ADS)

Aydin, M.; Nicewonger, M. R.; Saltzman, E. S.

2017-12-01

Carbonyl sulfide (COS) is the most abundant sulfur gas in the troposphere with a present-day mixing ratio of about 500 ppt. Direct and indirect emissions from the oceans are the predominant sources of atmospheric COS. The primary removal mechanism is uptake by terrestrial plants during photosynthesis. Because plants do not respire COS, atmospheric COS levels are linked to terrestrial gross primary productivity (GPP). Ancient air trapped in polar ice cores has been used to reconstruct COS records of the past atmosphere, which can be used to infer past GPP variability and potential changes in oceanic COS emission. We are currently analyzing samples from a newly drilled intermediate depth ice core from South Pole, Antarctica (SPICECORE). This core is advantageous for studying COS because the cold temperatures of South Pole ice lead to very slow rates of in situ loss due to hydrolysis. One hundred and eighty-four bubbly ice core samples have been analyzed to date with gas ages ranging from about 9.2 thousand (733 m depth) to 75 years (126 m depth) before present. After a 2% correction for gravitational enrichment in the firn, the mean COS mixing ratio for the data set is 312±15 ppt (±1s), with the data set median also equal to 312 ppt. The only significant long-term trend in the record is a 5-10% increase in COS during the last 2-3 thousand years of the Holocene. The SPICECORE data agree with previously published ice core COS records from other Antarctic sites during times of overlap, confirming earlier estimates of COS loss rates to in situ hydrolysis in ice cores. Antarctic ice core data place strict constraints on the COS mixing ratio and its range of variability in the southern hemisphere atmosphere during the last several millennia. Implications for the atmospheric COS budget will be discussed.

Vertical profile, source apportionment, and toxicity of PAHs in sediment cores of a wharf near the coal-based steel refining industrial zone in Kaohsiung, Taiwan.

PubMed

Chen, Chih-Feng; Chen, Chiu-Wen; Ju, Yun-Ru; Dong, Cheng-Di

2016-03-01

Three sediment cores were collected from a wharf near a coal-based steel refining industrial zone in Kaohsiung, Taiwan. Analyses for 16 polycyclic aromatic hydrocarbons (PAHs) of the US Environmental Protection Agency priority list in the core sediment samples were conducted using gas chromatography-mass spectrometry. The vertical profiles of PAHs in the core sediments were assessed, possible sources and apportionment were identified, and the toxicity risk of the core sediments was determined. The results from the sediment analyses showed that total concentrations of the 16 PAHs varied from 11774 ± 4244 to 16755 ± 4593 ng/g dry weight (dw). Generally, the vertical profiles of the PAHs in the sediment cores exhibited a decreasing trend from the top to the lower levels of the S1 core and an increasing trend of PAHs from the top to the lower levels of the S2 and S3 cores. Among the core sediment samples, the five- and six-ring PAHs were predominantly in the S1 core, ranging from 42 to 54 %, whereas the composition of the PAHs in the S2 and S3 cores were distributed equally across three groups: two- and three-ring, four-ring, and five- and six-ring PAHs. The results indicated that PAH contamination at the site of the S1 core had a different source. The molecular indices and principal component analyses with multivariate linear regression were used to determine the source contributions, with the results showing that the contributions of coal, oil-related, and vehicle sources were 38.6, 35.9, and 25.5 %, respectively. A PAH toxicity assessment using the mean effect range-median quotient (m-ERM-q, 0.59-0.79), benzo[a]pyrene toxicity equivalent (TEQ(carc), 1466-1954 ng TEQ/g dw), and dioxin toxicity equivalent (TEQ(fish), 3036-4174 pg TEQ/g dw) identified the wharf as the most affected area. The results can be used for regular monitoring, and future pollution prevention and management should target the coal-based industries in this region for pollution reduction.

Faunal and stable isotopic analyses of benthic foraminifera from the Southeast Seep on Kimki Ridge offshore southern California, USA

USGS Publications Warehouse

McGann, Mary; Conrad, James E.

2018-01-01

We investigated the benthic foraminiferal faunal and stable carbon and oxygen isotopic composition of a 15-cm push core (NA075-092b) obtained on a Telepresence-Enabled cruise to the Southeast Seep on Kimki Ridge offshore southern California. The seep core was taken at a depth of 973 m in the vicinity of a Beggiatoa bacterial mat and vesicomyid clams (Calyptogena) and compared to previously published data of living assemblages from ~ 714 m, four reference cores obtained at ~ 1030 m, and another one at 739 m. All of the reference sites are also from the Inner Continental Borderland but with no evidence of methane seepage.No endemic species were found at the seep site and most of the taxa recovered there have been reported previously from other seep or low oxygen environments. Q- and R-mode cluster analyses clearly illustrated differences in the faunal assemblages of the seep and non-seep sites. The living assemblage at Southeast Seep was characterized by abundant Takayanagia delicata, Cassidulina translucens, and Spiroplectammina biformis, whereas the non-seep San Pedro Basin reference assemblage was comprised primarily of Chilostomella oolina and Globobulimina pacifica. Density and species richness were lower at the seep site compared to the non-seep site, reflecting the harsher living conditions there. The dead assemblage at the seep site was dominated by Gyroidina turgida compared to Cassidulina translucens at the ~ 1030 m non-seep site and Cassidulina translucens, Pseudoparrella pacifica, and Takayanagia delicata at the 739 m non-seep site. Density was three times lower at Southeast Seep than at the non-seep sites of comparable water depth but species richness was ~ 30% higher. Stable carbon isotopic values were considerably depleted in the seep samples compared to the non-seep samples, with a progression from lightest to heaviest average δ13C values evident at the seep site reflecting microhabitat preference and vital effect: the deep infaunal species of Globobulimina, the shallow infaunal species Uvigerina peregrina, the epifaunal species Cibicidoides wuellerstorfi, and the shallow infaunal but aragonite-shelled species Hoeglundina elegans. The δ13C values downcore among each benthic species indicates ongoing fluid seepage through at least the last 3800 cal yr B.P. at Southeast Seep. Besides the continual local seepage, evidence from δ13C values of planktic foraminifera in the seep core suggest two pulses of methane (at 3000 and 3700 cal yr B.P.) were released that were large enough to influence much of the water column. Paired benthic and planktic foraminiferal stable oxygen isotope records provide evidence that there were no paleoenvironmental changes such as increased bottom-water temperature or changes in oxygen isotopic composition of bottom and pore waters during this 3800-year record to induce the methane releases. Instead, Southeast Seep appears to be the result of local faulting providing pathways for fluid to flow to the seafloor at a fault stepover or transpressional bend in the regional strike-slip system.

Estimating core temperature in infants and children after cardiac surgery: a comparison of six methods.

PubMed

Maxton, Fiona J C; Justin, Linda; Gillies, Donna

2004-01-01

Monitoring temperature in critically ill children is an important component of care, yet the accuracy of methods is often questioned. Temperature measured in the pulmonary artery is considered the 'gold standard', but this route is unsuitable for the majority of patients. An accurate, reliable and less invasive method is, however, yet to be established in paediatric intensive care work. To determine which site most closely reflects core temperature in babies and children following cardiac surgery, by comparing pulmonary artery temperature to the temperature measured at rectal, bladder, nasopharyngeal, axillary and tympanic sites. A convenience sample of 19 postoperative cardiac patients was studied. Temperature was recorded as a continuous measurement from pulmonary artery, rectal, nasopharyngeal and bladder sites. Axillary and tympanic temperatures were recorded at 30 minute intervals for 6 1/2 hours postoperatively. The small sample size of 19 infants and children limits the generalizability of the study. Repeated measures analysis of variance demonstrated no significant difference between pulmonary artery and bladder temperatures, and pulmonary artery and nasopharyngeal temperatures. Intraclass correlation showed that agreement was greatest between pulmonary artery temperature and temperature measured by bladder catheter. There was a significant difference between pulmonary artery temperature and temperature measured at rectal, tympanic and pulmonary artery and axillary sites. Repeated measures analysis showed a significant lag between pulmonary artery and rectal temperature of between 0 and 150 minutes after the 6-hour measurement period. In this study, bladder temperature was shown to be the best estimate of pulmonary artery temperature, closely followed by the temperature measured by nasopharyngeal probe. The results support the use of bladder or nasopharyngeal catheters to monitor temperature in critically ill children after cardiac surgery.

Long-term seafloor monitoring at an open ocean aquaculture site in the western Gulf of Maine, USA: development of an adaptive protocol.

PubMed

Grizzle, R E; Ward, L G; Fredriksson, D W; Irish, J D; Langan, R; Heinig, C S; Greene, J K; Abeels, H A; Peter, C R; Eberhardt, A L

2014-11-15

The seafloor at an open ocean finfish aquaculture facility in the western Gulf of Maine, USA was monitored from 1999 to 2008 by sampling sites inside a predicted impact area modeled by oceanographic conditions and fecal and food settling characteristics, and nearby reference sites. Univariate and multivariate analyses of benthic community measures from box core samples indicated minimal or no significant differences between impact and reference areas. These findings resulted in development of an adaptive monitoring protocol involving initial low-cost methods that required more intensive and costly efforts only when negative impacts were initially indicated. The continued growth of marine aquaculture is dependent on further development of farming methods that minimize negative environmental impacts, as well as effective monitoring protocols. Adaptive monitoring protocols, such as the one described herein, coupled with mathematical modeling approaches, have the potential to provide effective protection of the environment while minimize monitoring effort and costs. Copyright © 2014 Elsevier Ltd. All rights reserved.

Hydrogeologic and water-quality data for the main site, Naval Surface Warfare Center, Dahlgren Laboratory, Dahlgren, Virginia

USGS Publications Warehouse

Bell, Clifton F.; Bolles, Thomas P.; Harlow, George E.

1994-01-01

Hydrogeologic and water-quality data were collected at the Naval Surface Warfare Center, Dahlgren Laboratory at Dahlgren, Virginia, as part of a hydrogeologic assessment of the shallow aquifer system begun in 1992. The U.S. Geological Survey conducted this study to provide the Navy with hydrogeologic data to meet the requirements of a Spill Contingency Plan. This report describes the ground-water observation-well network, hydro- geologic, and water-quality data collected between August 1992 and September 1993. The report includes a description of the locations and con- struction of 35 observation wells on the Main Site. Hydrologic data include lithologic core samples, geophysical logs, and vertical hydraulic conductivity measurements of selected core intervals. Hydrologic data include synoptic and hourly measurements of ground-water levels, observation-well slug tests to determine horizontal hydraulic conductivity, and tide data. Water-quality data include analyses of major dissolved constituents in ground water and surface water.

Determination of premining geochemical background and delineation of extent of sediment contamination in Blue Creek downstream from Midnite Mine, Stevens County, Washington

USGS Publications Warehouse

Church, Stan E.; Kirschner, Frederick E.; Choate, LaDonna M.; Lamothe, Paul J.; Budahn, James R.; Brown, Zoe Ann

2008-01-01

Geochemical and radionuclide studies of sediment recovered from eight core sites in the Blue Creek flood plain and Blue Creek delta downstream in Lake Roosevelt provided a stratigraphic geochemical record of the contamination from uranium mining at the Midnite Mine. Sediment recovered from cores in a wetland immediately downstream from the mine site as well as from sediment catchments in Blue Creek and from cores in the delta in Blue Creek cove provided sufficient data to determine the premining geochemical background for the Midnite Mine tributary drainage. These data provide a geochemical background that includes material eroded from the Midnite Mine site prior to mine development. Premining geochemical background for the Blue Creek basin has also been determined using stream-sediment samples from parts of the Blue Creek, Oyachen Creek, and Sand Creek drainage basins not immediately impacted by mining. Sediment geochemistry showed that premining uranium concentrations in the Midnite Mine tributary immediately downstream of the mine site were strongly elevated relative to the crustal abundance of uranium (2.3 ppm). Cesium-137 (137Cs) data and public records of production at the Midnite Mine site provided age control to document timelines in the sediment from the core immediately downstream from the mine site. Mining at the Midnite Mine site on the Spokane Indian Reservation between 1956 and 1981 resulted in production of more than 10 million pounds of U3O8. Contamination of the sediment by uranium during the mining period is documented from the Midnite Mine along a small tributary to the confluence of Blue Creek, in Blue Creek, and into the Blue Creek delta. During the period of active mining (1956?1981), enrichment of base metals in the sediment of Blue Creek delta was elevated by as much as 4 times the concentration of those same metals prior to mining. Cadmium concentrations were elevated by a factor of 10 and uranium by factors of 16 to 55 times premining geochemical background determined upstream of the mine site. Postmining metal concentrations in sediment are lower than during the mining period, but remain elevated relative to premining geochemical background. Furthermore, the sediment composition of surface sediment in the Blue Creek delta is contaminated. Base-metal contamination by arsenic, cadmium, lead, and zinc in sediment in the delta in Blue Creek cove is dominated by suspended sediment from the Coeur d?Alene mining district. Uranium contamination in surface sediment in the delta of Blue Creek cove extends at least 500 meters downstream from the mouth of Blue Creek as defined by the 1,290-ft elevation boundary between lands administered by the National Park Service and the Spokane Indian Tribe. Comparisons of the premining geochemical background to sediment sampled during the period the mine was in operation, and to the sediment data from the postmining period, are used to delineate the extent of contaminated sediment in Blue Creek cove along the thalweg of Blue Creek into Lake Roosevelt. The extent of contamination out into Lake Roosevelt by mining remains open.

Evaluation of accessible mineral surface areas for improved prediction of mineral reaction rates in porous media

NASA Astrophysics Data System (ADS)

Beckingham, Lauren E.; Steefel, Carl I.; Swift, Alexander M.; Voltolini, Marco; Yang, Li; Anovitz, Lawrence M.; Sheets, Julia M.; Cole, David R.; Kneafsey, Timothy J.; Mitnick, Elizabeth H.; Zhang, Shuo; Landrot, Gautier; Ajo-Franklin, Jonathan B.; DePaolo, Donald J.; Mito, Saeko; Xue, Ziqiu

2017-05-01

The rates of mineral dissolution reactions in porous media are difficult to predict, in part because of a lack of understanding of mineral reactive surface area in natural porous media. Common estimates of mineral reactive surface area used in reactive transport models for porous media are typically ad hoc and often based on average grain size, increased to account for surface roughness or decreased by several orders of magnitude to account for reduced surface reactivity of field as opposed to laboratory samples. In this study, accessible mineral surface areas are determined for a sample from the reservoir formation at the Nagaoka pilot CO2 injection site (Japan) using a multi-scale image analysis based on synchrotron X-ray microCT, SEM QEMSCAN, XRD, SANS, and FIB-SEM. This analysis not only accounts for accessibility of mineral surfaces to macro-pores, but also accessibility through connected micro-pores in smectite, the most abundant clay mineral in this sample. While the imaging analysis reveals that most of the micro- and macro-pores are well connected, some pore regions are unconnected and thus inaccessible to fluid flow and diffusion. To evaluate whether mineral accessible surface area accurately reflects reactive surface area a flow-through core experiment is performed and modeled at the continuum scale. The core experiment is performed under conditions replicating the pilot site and the evolution of effluent solutes in the aqueous phase is tracked. Various reactive surface area models are evaluated for their ability to capture the observed effluent chemistry, beginning with parameter values determined as a best fit to a disaggregated sediment experiment (Beckingham et al., 2016) described previously. Simulations that assume that all mineral surfaces are accessible (as in the disaggregated sediment experiment) over-predict the observed mineral reaction rates, suggesting that a reduction of RSA by a factor of 10-20 is required to match the core flood experimental data. While the fit of the effluent chemistry (and inferred mineral dissolution rates) greatly improve when the pore-accessible mineral surface areas are used, it was also necessary to include highly reactive glass phases to match the experimental observations, in agreement with conclusions from the disaggregated sediment experiment. It is hypothesized here that the 10-20 reduction in reactive surface areas based on the limited pore accessibility of reactive phases in core flood experiment may be reasonable for poorly sorted and cemented sediments like those at the Nagaoka site, although this reflects pore rather than larger scale heterogeneity.

Carbonyl sulfide during the late Holocene from measurements in Antarctic ice cores (Invited)

NASA Astrophysics Data System (ADS)

Aydin, M.; Fudge, T. J.; Verhulst, K. R.; Waddington, E. D.; Saltzman, E. S.

2013-12-01

Carbonyl sulfide (COS) is the most abundant sulfur gas in the troposphere with a global average mixing ratio of about 500 parts per trillion (ppt) and a lifetime of 3 years. It is produced by a variety of natural and anthropogenic sources. Oceans are the largest source, emitting COS and precursors carbon disulfide and dimethyl sulfide. The most important removal process of COS is uptake by terrestrial plants during photosynthesis. Interest in the atmospheric variability of COS is primarily due to its potential value as a proxy for changes in gross primary productivity of the land biosphere. Ice core COS records may provide the long term observational basis needed to explore climate driven changes in terrestrial productivity and the resulting impacts, for example, on atmospheric CO2 levels. Previous measurements in a South Pole ice core established the preindustrial COS levels at ~30% of the modern atmosphere and revealed that atmospheric COS increased at an average rate of 1.8 ppt per 100 years over the last 2,000 years [Aydin et al., 2008]. We have since measured COS in 5 additional ice cores from 4 different sites in Antarctica. These measurements display a site-dependent downcore decline in COS, apparently driven by in situ hydrolysis. The reaction is strongly temperature dependent, with the hydrolysis lifetimes (e-folding) ranging from thousands to hundreds of thousands of years. We implement a novel technique that uses ice and heat flow models to predict temperature histories for the ice core samples from different sites and correct for the COS lost to in situ hydrolysis assuming first order kinetics. The 'corrected' COS records confirm the trend observed previously in the COS record from the South Pole ice core. The new, longer record suggests the slow increase in atmospheric COS may have started about 5,000 years ago and continued for 4,500 years until levels stabilized about 500 years ago. Atmospheric CO2 was also rising during this time period, suggesting the atmospheric levels of both trace gases might have changed as a response to a long-term decline in terrestrial productivity during the late Holocene.

Ground-truth collections at the MTI core sites

NASA Astrophysics Data System (ADS)

Garrett, Alfred J.; Kurzeja, Robert J.; Parker, Matthew J.; O'Steen, Byron L.; Pendergast, Malcolm M.; Villa-Aleman, Eliel

2001-08-01

The Savannah River Technology Center (SRTC) selected 13 sites across the continental US and one site in the western Pacific to serve as the primary or core site for collection of ground truth data for validation of MTI science algorithms. Imagery and ground truth data from several of these sites are presented in this paper. These sites are the Comanche Peak, Pilgrim and Turkey Point power plants, Ivanpah playas, Crater Lake, Stennis Space Center and the Tropical Western Pacific ARM site on the island of Nauru. Ground truth data includes water temperatures (bulk and skin), radiometric data, meteorological data and plant operating data. The organizations that manage these sites assist SRTC with its ground truth data collections and also give the MTI project a variety of ground truth measurements that they make for their own purposes. Collectively, the ground truth data from the 14 core sites constitute a comprehensive database for science algorithm validation.

Core Across the San Andreas Fault at SAFOD - Photographs, Physical Properties Data, and Core-Handling Procedures

NASA Astrophysics Data System (ADS)

Kirschner, D. L.; Carpenter, B.; Keenan, T.; Sandusky, E.; Sone, H.; Ellsworth, B.; Hickman, S.; Weiland, C.; Zoback, M.

2007-12-01

Core samples were obtained that cross three faults of the San Andreas Fault Zone north of Parkfield, California, during the summer of 2007. The cored intervals were obtained by sidetracking off the SAFOD Main Hole that was rotary drilled across the San Andreas in 2005. The first cored interval targeted the pronounced lithologic boundary between the Salinian terrane and the Great Valley and Franciscan formations. Eleven meters of pebbly conglomerate (with minor amounts of fine sands and shale) were obtained from 3141 to 3152 m (measured depth, MD). The two conglomerate units are heavily fractured with many fractures having accommodated displacement. Within this cored interval, there is a ~1m zone with highly sheared, fine-grained material, possibly ultracataclasite in part. The second cored interval crosses a creeping segment of a fault that has been deforming the cemented casing of the adjacent Main Hole. This cored interval sampled the fault 100 m above a seismogenic patch of M2 repeating earthquakes. Thirteen meters of core were obtained across this fault from 3186 to 3199 m (MD). This fault, which is hosted primarily in siltstones and shales, contains a serpentinite body embedded in a highly sheared shale and serpentinite-bearing fault gouge unit. The third cored interval crosses a second creeping fault that has also been deforming the cemented casing of the Main Hole. This fault, which is the most rapidly shearing fault in the San Andreas fault zone based on casing deformation, contains multiple fine- grained clay-rich fault strands embedded in highly sheared shales and lesser deformed sandstones. Initial processing of the cores was carried out at the drill site. Each core came to the surface in 9 meter-long aluminum core barrels. These were cut into more manageable three-foot sections. The quarter-inch-thick aluminum liner of each section was cut and then split apart to reveal the 10 cm diameter cores. Depending on the fragility and porosity of the rock, the drilling fluid was removed either by washing with dilute calcium chloride brine (to approximately match the salinity of the formation fluids) or by gently scraping away drilling mud on the core surface. Once cleaned, each core section was photographed to very high resolution on a Geotek Multi- Sensor Core Logging (MSCL) system. This system was also used to determine the bulk density and magnetic susceptibility of each section. The 25 MB high-resolution photographs and the raw and processed physical properties data were then uploaded to the ICDP web server in Potsdam for public access (http://safod.icdp- online.org). The cores will be archived at the Gulf Coast Repository of the Integrated Ocean Drilling Program in College Station, TX. The MSCL photographs, physical property measurements, and other related data, such as geophysical logs, will be integrated using CoreWall, and will be on display at the meeting. All samples, data, and imagery are available to the science community.

Determining site index accurately in even-aged stands

Treesearch

Gayne G. Erdmann; Ralph M., Jr. Peterson

1992-01-01

Good site index estimates are necessary for intensive forest management. To get tree age used in determining site index, increment cores are commonly used. The diffuse-porous rings of northern hardwoods, though, are difficult to count in cores, so many site index estimates are imprecise. Also, measuring the height of standing trees is more difficult and less accurate...

Diatoms and stratigraphically significant silicoflagellates from the Atlantic Margin Coring Project and other Atlantic margin sites

USGS Publications Warehouse

Abbott, W.H.

1980-01-01

In 1976, 19 sites were cored along the U.S. Atlantic Continental Shelf and Slope by the Oceanographic Branch of the U.S. Geological Survey aboard the Glomar Conception. Only 6 sites contained siliceous microfossil assemblages of sufficient quantity and quality for biostratigraphic study. Two of the sites, AMCOR (Atlantic Margin Coring Project) 6002 and AMCOR 6011, contained good Miocene assemblages: a small Pleistocene assemblage occurred at the top of AMCOR 6002. A Late Miocene to Early Pliocene assemblage was encountered in AMCOR 6007B. AMCOR 6013, 6019, and 6021 contained Pleistocene assemblages. In addition to the AMCOR cores, 3 additional Atlantic Margin cores were studied. These were the JOIDES 1 (Caldrill) core, and Atlantic Slope Project (ASP) cores 10 and 22. JOIDES 1 contains a Middle Miocene assemblage similar to AMCOR 6002. ASP 10 contains a Lower Pliocene assemblage and ASP 22 contains a Middle to Late Oligocene and a Pleistocene assemblage. Siliceous assemblages at all sites consisted mainly of shallow shelf species, including brackish and marine benthics and occasionally freshwater forms. Although planktonic forms were present, they were few and most were extant cosmopolitan species. This makes it difficult to correlate the biostratigraphy of the sediments with siliceous microfossil zonations from other oceans. The only biostratigraphic zonations for Atlantic Shelf diatom assemblages are for the Miocene.

Comet nucleus and asteroid sample return missions

NASA Technical Reports Server (NTRS)

Melton, Robert G.; Thompson, Roger C.; Starchville, Thomas F., Jr.; Adams, C.; Aldo, A.; Dobson, K.; Flotta, C.; Gagliardino, J.; Lear, M.; Mcmillan, C.

1992-01-01

During the 1991-92 academic year, the Pennsylvania State University has developed three sample return missions: one to the nucleus of comet Wild 2, one to the asteroid Eros, and one to three asteroids located in the Main Belt. The primary objective of the comet nucleus sample return mission is to rendezvous with a short period comet and acquire a 10 kg sample for return to Earth. Upon rendezvous with the comet, a tethered coring and sampler drill will contact the surface and extract a two-meter core sample from the target site. Before the spacecraft returns to Earth, a monitoring penetrator containing scientific instruments will be deployed for gathering long-term data about the comet. A single asteroid sample return mission to the asteroid 433 Eros (chosen for proximity and launch opportunities) will extract a sample from the asteroid surface for return to Earth. To limit overall mission cost, most of the mission design uses current technologies, except the sampler drill design. The multiple asteroid sample return mission could best be characterized through its use of future technology including an optical communications system, a nuclear power reactor, and a low-thrust propulsion system. A low-thrust trajectory optimization code (QuickTop 2) obtained from the NASA LeRC helped in planning the size of major subsystem components, as well as the trajectory between targets.

Phytoscreening with SPME: Variability Analysis.

PubMed

Limmer, Matt A; Burken, Joel G

2015-01-01

Phytoscreening has been demonstrated at a variety of sites over the past 15 years as a low-impact, sustainable tool in delineation of shallow groundwater contaminated with chlorinated solvents. Collection of tree cores is rapid and straightforward, but low concentrations in tree tissues requires sensitive analytics. Solid-phase microextraction (SPME) is amenable to the complex matrix while allowing for solvent-less extraction. Accurate quantification requires the absence of competitive sorption, examined here both in laboratory experiments and through comprehensive examination of field data. Analysis of approximately 2,000 trees at numerous field sites also allowed testing of the tree genus and diameter effects on measured tree contaminant concentrations. Collectively, while these variables were found to significantly affect site-adjusted perchloroethylene (PCE) concentrations, the explanatory power of these effects was small (adjusted R(2) = 0.031). 90th quantile chemical concentrations in trees were significantly reduced by increasing Henry's constant and increasing hydrophobicity. Analysis of replicate tree core data showed no correlation between replicate relative standard deviation (RSD) and wood type or tree diameter, with an overall median RSD of 30%. Collectively, these findings indicate SPME is an appropriate technique for sampling and analyzing chlorinated solvents in wood and that phytoscreening is robust against changes in tree type and diameter.

Vertical characterization of soil contamination using multi-way modeling--a case study.

PubMed

Singh, Kunwar P; Malik, Amrita; Basant, Ankita; Ojha, Priyanka

2008-11-01

This study describes application of chemometric multi-way modeling approach to analyze the dataset pertaining to soils of industrial area with a view to assess the soil/sub-soil contamination, accumulation pathways and mobility of contaminants in the soil profiles. The three-way (sampling depths, chemical variables, sampling sites) dataset on heavy metals in soil samples collected from three different sites in an industrial area, up to a depth of 60 m each was analyzed using three-way Tucker3 model validated for stability and goodness of fit. A two component Tucker3 model, explaining 66.6% of data variance, allowed interpretation of the data information in all the three modes. The interpretation of core elements revealing interactions among the components of different modes (depth, variables, sites) allowed inferring more realistic information about the contamination pattern of soils both along the horizontal and vertical coordinates, contamination pathways, and mobility of contaminants through soil profiles, as compared to the traditional data analysis techniques. It concluded that soils at site-1 and site-2 are relatively more contaminated with heavy metals of both the natural as well as anthropogenic origins, as compared to the soil of site-3. Moreover, the accumulation pathways of metals for upper shallow layers and deeper layers of soils in the area were differentiated. The information generated would be helpful in developing strategies for remediation of the contaminated soils for reducing the subsequent risk of ground-water contamination in the study region.

Evaluating Long-Term Impacts of Soil-Mixing Source-Zone Treatment using Cryogenic Core Collection

DTIC Science & Technology

2017-06-01

to (a) coring equipment freezing downhole, (b) freezing or binding of the core sample in barrel, and ( c ) running out of LN in the vicinity of sampling...encountered due to (a) coring equipment freezing downhole, (b) freezing or binding of the core sample in barrel, and ( c ) running out of LN in the...equipment freezing downhole, (b) freezing or binding of the core sample in barrel, and ( c ) running out of LN in the vicinity of sampling. Downhole

Allan Hills Pleistocene Ice Project (PIP)

NASA Astrophysics Data System (ADS)

Kurbatov, A.; Brook, E.; Campbell, S. W.; Conway, H.; Dunbar, N. W.; Higgins, J. A.; Iverson, N. A.; Kehrl, L. M.; McIntosh, W. C.; Spaulding, N. E.; Yan, Y.; Mayewski, P. A.

2016-12-01

A major international effort to identify at least 1.5 Ma old ice for paleoclimate reconstructions has successfully resulted in the selection of several potential drill sites in East Antarctica. At this point it is indisputable that the Antarctic ice sheet captures a continuous envinronmental record of the Earth that spans the Mid Pleistocene Transition (MPT). In addition to traditional ice coring approaches, the oldest ice can also be recovered in Antarctic Blue Ice Areas (BIA). We have already successfully demonstrated that the Allan Hills (AH) BIA captures a regional climate signal and robust record of 1Ma atmosphere that can be studied with a relatively uncomplicated logistical imprint and essentially unlimited sampling volume. The attractiveness of unlimited sampling of known age ice is the basis for the "ice park" concept proposed earlier by our research team. The idea is that, once the age of ice exposed along the flow line at the surface of BIA is mapped, it could be sampled for numerous research projects as needed. Here we propose an intermediate ( 1,150 m deep) ice core drill site, located only 240 km away from McMurdo base that will help to develop a, continuous, high quality regional paleoclimate record that is at least 1Ma old. We will introduce and discuss the glaciological settings, paleoclimate signals and possible limitations and advantages of the 1 Ma AH BIA regional paleoclimate record. The research was funded by NSF Division of Polar Programs.

Effects of produced waters at oilfield production sites on the Osage Indian Reservation, northeastern Oklahoma

USGS Publications Warehouse

Otton, James K.; Asher-Bolinder, Sigrid; Owen, Douglass E.; Hall, Laurel

1997-01-01

The authors conducted limited site surveys in the Wildhorse and Burbank oilfields on the Osage Indian Reservation, northeastern Oklahoma. The purpose was to document salt scarring, erosion, and soil and water salinization, to survey for radioactivity in oilfield equipment, and to determine if trace elements and naturally occurring radioactive materials (NORM) were present in soils affected by oilfield solid waste and produced waters. These surveys were also designed to see if field gamma spectrometry and field soil conductivity measurements were useful in screening for NORM contamination and soil salinity at these sites. Visits to oilfield production sites in the Wildhorse field in June of 1995 and 1996 confirmed the presence of substantial salt scarring, soil salinization, and slight to locally severe erosion. Levels of radioactivity on some oil field equipment, soils, and road surfaces exceed proposed state standards. Radium activities in soils affected by tank sludge and produced waters also locally exceed proposed state standards. Laboratory analyses of samples from two sites show moderate levels of copper, lead, and zinc in brine-affected soils and pipe scale. Several sites showed detectable levels of bromine and iodine, suggesting that these trace elements may be present in sufficient quantity to inhibit plant growth. Surface waters in streams at two sampled sites exceed total dissolved solid limits for drinking waters. At one site in the Wildhorse field, an EM survey showed that saline soils in the upper 6m extend from a surface salt scar downvalley about 150 m. (Photo [95k]: Dead oak trees and partly revegetated salt scar at Site OS95-2 in the Wildhorse field, Osage County, Oklahoma.) In the Burbank field, limited salt scarring and slight erosion occurs in soils at some sites and low to moderate levels of radioactivity were observed in oil field equipment at some sites. The levels of radioactivity and radium observed in some soils and equipment at these sites are above levels of concern as defined in regulations proposed by the Conference of Radiation Control Program Directors. The volumes of material involved appear to be relatively small for most sites. The lead levels observed in soils affected by tank sludge wastes are about one half of the US Environmental Protection Agency (USEPA) interim remedial action levels used for Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) and Resource Conservation and Recovery Act (RCRA) sites (400 ppm). Field gamma spectrometry proved useful in delineating areas where radium has been added to the natural soil by oilfield solid waste and produced water, although the technique does not meet standards of assessment used in the state of Louisiana which require core sampling of 15 cm intervals and radiochemical analysis in the laboratory. Further work is needed to develop field gamma spectrometry as a substitute for the more expensive coring and laboratory analysis. The ratio of radium-228 to radium-226 may hold promise in evaluating the relative ages of NORM contamination at a site.

Isotopic composition of ice cores and meltwater from upper fremont glacier and Galena Creek rock glacier, Wyoming

USGS Publications Warehouse

DeWayne, Cecil L.; Green, J.R.; Vogt, S.; Michel, R.; Cottrell, G.

1998-01-01

Meltwater runoff from glaciers can result from various sources, including recent precipitation and melted glacial ice. Determining the origin of the meltwater from glaciers through isotopic analysis can provide information about such things as the character and distribution of ablation on glaciers. A 9.4 m ice core and meltwater were collected in 1995 and 1996 at the glacigenic Galena Creek rock glacier in Wyoming's Absaroka Mountains. Measurements of chlorine-36 (36Cl), tritium (3H), sulphur-35 (35S), and delta oxygen-18 (??18O) were compared to similar measurements from an ice core taken from the Upper Fremont Glacier in the Wind River Range of Wyoming collected in 1991-95. Meltwater samples from three sites on the rock glacier yielded 36Cl concentrations that ranged from 2.1 ?? 1.0 X 106 to 5.8??0.3 X 106 atoms/l. The ice-core 36Cl concentrations from Galena Creek ranged from 3.4??0.3 X 105 to 1.0??0.1 X 106 atoms/l. Analysis of an ice core from the Upper Fremont Glacier yielded 36Cl concentrations of 1.2??0.2 X 106 and 5.2??0.2 X 106 atoms/l for pre- 1940 ice and between 2 X 106 and 3 X 106 atoms/l for post-1980 ice. Purdue's PRIME Lab analyzed the ice from the Upper Fremont Glacier. The highest concentration of 36Cl in the ice was 77 ?? 2 X 106 atoms/l and was deposited during the peak of atmospheric nuclear weapons testing in the late 1950s. This is an order of magnitude greater than the largest measured concentration from both the Upper Fremont Glacier ice core that was not affected by weapons testing fallout and the ice core collected from the Galena Creek rock glacier. Tritium concentrations from the rock glacier ranged from 9.2??0.6 to 13.2??0.8 tritium units (TU) in the meltwater to -1.3??1.3 TU in the ice core. Concentrations of 3H in the Upper Fremont Glacier ice core ranged from 0 TU in the ice older than 50 years to 6-12 TU in the ice deposited in the last 10 years. The maximum 3H concentration in ice from the Upper Fremont Glacier deposited in the early 1960s during peak weapons testing fallout for this isotope was 360 TU. One meltwater sample from the rock glacier was analyzed for 35S with a measured concentration of 5.4??1.0 millibecquerel per liter (mBeq/l). Modern precipitation in the Rocky Mountains contains 35S from 10 to 40 mBeq/L. The ??18O results in meltwater from the Galena Creek rock glacier (-17.40??0.1 to -17.98??0.1 per mil) are similar to results for modern precipitation in the Rocky Mountains. Comparison of these isotopic concentrations from the two glaciers suggest that the meltwater at the Galena Creek site is composed mostly of melted snow and rain that percolates through the rock debris that covers the glacier. Additionally, this water from the rock debris is much younger (less than two years) than the reported age of about 2000 years for the subsurface ice at the mid-glacier coring site. Thus the meltwater from the Galena Creek rock glacier is composed primarily of melted surface snow and rain water rather than melted glacier ice, supporting previous estimates of slow ablation rates beneath the surface debris of the rock glacier.

Multiple core-hole formation by free-electron laser radiation in molecular nitrogen

NASA Astrophysics Data System (ADS)

Banks, H. I. B.; Little, D. A.; Emmanouilidou, A.

2018-05-01

We investigate the formation of multiple-core-hole states of molecular nitrogen interacting with a free-electron laser pulse. In previous work, we obtained bound and continuum molecular orbitals in the single-center expansion scheme and used these orbitals to calculate photo-ionization and auger decay rates. We extend our formulation to track the proportion of the population that accesses single-site versus two-site double-core-hole (TSDCH) states, before the formation of the final atomic ions. We investigate the pulse parameters that favor the formation of the single-site and TSDCH as well as triple-core-hole states for 525 and 1100 eV photons.

Application of Rhizon Porewater Samplers to Shipboard Operations, IODP Expedition 308, Northeast Gulf of Mexico

NASA Astrophysics Data System (ADS)

Gilhooly, W. P.; Macko, S. A.; Flemings, P. B.

2005-12-01

Pleistocene and Recent sediments within the Brazos-Trinity and Ursa Basins (northwestern Gulf of Mexico) were largely deposited by turbidity currents and have been deformed by a number of mass transport events. The geochemical composition of interstitial waters was determined in order to assess fluid flow within these sediments. Typical porewater sampling resolution, using advanced piston coring and the traditional Manheim squeezer technique, is approximately one sample every other core (20m) with the highest working resolution at one sample every 1.5m. In this study, Rhizon soil moisture samplers were used to attain high-resolution porewater profiles within sea floor surface sediments and for permeable sediments at depth. The small dimensions (2mm x 30mm) and pore-size (1μm) of the devices enable high-frequency placement within a core, specific targeting of the sequence of interest, and do not require sediment removal from the core, or filtering of extracted porewaters. Initial shipboard analyses derived from sediments at the Ursa Basin (Site 1322) indicate a linear decrease in salinity with depth at U1322 where the overpressure gradient is thought to be greatest. The less saline waters with depth lends evidence for potential mixing between deep-seated fluids and low salinity ones derived from the Blue Unit and seawater. Isotopic composition and concentrations of sulfur species (SO4 and H2S) dissolved in porewaters, as well as, ionic compositions (Cl, Na, K, Ca, Mg) and chemical composition of associated sediments (%C, %N, 13C, and 15N) are compared with chemical results obtained with squeezers.

Occurrence of Agricultural Chemicals in Shallow Ground Water and the Unsaturated Zone, Northeast Nebraska Glacial Till, 2002-04

USGS Publications Warehouse

Stanton, Jennifer S.; Steele, Gregory V.; Vogel, Jason R.

2007-01-01

Agricultural chemicals applied at the land surface in northeast Nebraska can move downward, past the crop root zone, to ground water. Because agricultural chemicals applied at the land surface are more likely to be observed in the shallowest part of an aquifer, an assessment of shallow ground-water and unsaturated zone quality in the northeast Nebraska glacial till was completed between 2002 and 2004. Ground-water samples were collected at the first occurrence of ground water or just below the water table at 32 sites located in areas likely affected by agriculture. Four of the 32 sites were situated along a ground-water flow path with its downgradient end next to Maple Creek. Twenty-eight sites were installed immediately adjacent to agricultural fields throughout the glacial-till area. In addition to those 32 sites, two sites were installed in pastures to represent ground-water conditions in a non-cropland setting. Ground-water samples were analyzed for physical properties and concentrations of nitrogen and phosphorus compounds, selected pesticides and pesticide degradates, dissolved solids, major ions, trace elements, and dissolved organic carbon. Chlorofluorocarbons (CFCs) or sulfur hexafluoride (SF6) concentrations were analyzed at about 70 percent of the monitoring wells to estimate the residence time of ground water. Borehole-core samples were collected from 28 of the well boreholes. Sediment in the unsaturated zone was analyzed for nitrate, chloride, and ammonia concentrations. Analytical results indicated that the agricultural chemicals most often detected during this study were nitrates and herbicides. Nitrate as nitrogen (nitrate-N) concentrations (2003 median 9.53 milligrams per liter) indicated that human activity has affected the water quality of recently recharged ground water in approximately two-thirds of the wells near corn and soybean fields. The principal pesticide compounds that were detected reflect the most-used pesticides in the area and included parent or degradate compounds of acetochlor, alachlor, atrazine, and metolachlor. Overall, pesticide concentrations in ground-water samples collected in 2003 and 2004 were small and did not exceed public drinking-water standards where established. On average, more pesticides were detected in the flow-path wells than in the glacial-till network wells. The presence of a perennial stream within 1,640 feet of a well was correlated to smaller nitrate-N concentrations in the well water, and the presence of a road ditch within 164 feet of the well was correlated to the presence of detectable pesticides in the well water. All other variables tested showed no significant correlations to nitrate-N concentrations or pesticide detections. Unsaturated zone soil cores collected in 2002 from well boreholes indicated that nitrogen in the forms of nitrate-N and ammonia as nitrogen (ammonia-N) was available in the unsaturated zone for transport to ground water. Concentrations of nitrate-N and ammonia-N in these soil cores were inversely correlated to depth, and nitrate-N concentrations were correlated to chloride concentrations.

Radionuclide activities and metal concentrations in sediments of the Sebou Estuary, NW Morocco, following a flooding event.

PubMed

Laissaoui, A; Mas, J L; Hurtado, S; Ziad, N; Villa, M; Benmansour, M

2013-06-01

This study presents metal concentrations (Fe, Mg, Mn, Co, Cu, Zn, Pb, As, Sr and V) and radionuclide activities ((40)K, (137)Cs, (210)Pb, (226)Ra, (228)Ac, (234)Th and (212)Pb) in surface deposits and a sediment core from the Sebou Estuary, Northwest Morocco. Samples were collected in April 2009, about 2 months after a flooding event, and analysed using a well-type coaxial gamma-ray detector and inductively coupled plasma-quadrupole mass spectrometry. Activities of radionuclides and concentrations of almost all elements in surface samples displayed only moderate spatial variation, suggesting homogenous deposition of eroded local soil in response to intense precipitation. Excess (210)Pb displayed relatively constant activity throughout the sediment core, preventing dating and precluding determination of the historical accumulation rates of pollutants at the core site. Some elements showed non-systematic trends with depth and displayed local maxima and minima. Other elements presented relatively systematic concentration trends or relatively constant levels with discrete maxima and/or minima. Except for Mn, Sr and Cr, all metal concentrations in sediment were below levels typical of polluted systems, suggesting little human impact or losses of metals from sediment particles.

Temporal changes in lithology and radiochemistry from the back-barrier environments along the Chandeleur Islands, Louisiana: March 2012-July 2013

USGS Publications Warehouse

Marot, Marci E.; Adams, C. Scott; Richwine, Kathryn A.; Smith, Christopher G.; Osterman, Lisa E.; Bernier, Julie C.

2014-01-01

Scientists from the U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center conducted a time-series collection of shallow sediment cores from the back-barrier environments along the Chandeleur Islands, Louisiana from March 2012 through July 2013. The sampling efforts were part of a larger USGS study to evaluate effects on the geomorphology of the Chandeleur Islands following the construction of an artificial sand berm to reduce oil transport onto federally managed lands. The objective of this study was to evaluate the response of the back-barrier tidal and wetland environments to the berm. This report serves as an archive for sedimentological, radiochemical, and microbiological data derived from the sediment cores. Data are available for a time-series of four sampling periods: March 2012; July 2012; September 2012; and July 2013. Downloadable data are available as Excel spreadsheets and as JPEG files. Additional files include: ArcGIS shapefiles of the sampling sites, detailed results of sediment grain size analyses, and formal Federal Geographic Data Committee metadata.

Multifunctional magneto-plasmonic nanotransducers for advanced theranostics: synthesis, modeling and experiment

NASA Astrophysics Data System (ADS)

Masoumi, Masoud; Wang, Ya; Liu, Mingzhao; Tewolde, Mahder; Longtin, Jon

2015-04-01

In this work, nano-transducers with a superparamagnetic iron oxide (SPIO) core have been synthesized by preparation of precursor gold nanoseeds loaded on SPIO-embedded silica to form a gold nanoshell. The goal is for such nanotansducers to be used in theranostics to detect brain tumors by using MRI imaging and then assist in their treatment by using photothermal ablation. The iron oxide core provides for the use of a magnetic-field to guide the particles to the target (tumor) site. The gold nanoshell can be then readily heated using incident light and/or an alternating magneticfield. After synthesis of nano-transducer samples, Transmission Electron Microscopy was employed to analyze the formation of each layer. Then UV spectroscopy experiments were conducted to examine the light absorbance of the synthesized samples. The UV-visible absorption spectra shows a clear surface plasmon resonance (SPR) band around 530 nm, verifying the presence of gold coating nanoshells. Finally photothermal experiments using a high-power laser beam with a wavelength of 527 nm were performed to heat the samples. It was found that the temperature reaches 45° C in 12 minutes.

Characterisation of lubricin in synovial fluid from horses with osteoarthritis.

PubMed

Svala, E; Jin, C; Rüetschi, U; Ekman, S; Lindahl, A; Karlsson, N G; Skiöldebrand, E

2017-01-01

The glycoprotein lubricin contributes to the boundary lubrication of the articular cartilage surface. The early events of osteoarthritis involve the superficial layer where lubricin is synthesised. To characterise the glycosylation profile of lubricin in synovial fluid from horses with osteoarthritis and study secretion and degradation of lubricin in an in vitro inflammation cartilage model. In vitro study. Synovial fluid samples collected from horses with joints with normal articular cartilage and structural osteoarthritic lesions; with and without osteochondral fragments, were analysed for the lubricin glycosylation profiles. Articular cartilage explants were stimulated with or without interleukin-1β for 25 days. Media samples collected at 3-day intervals were analysed by quantitative proteomics, western blot and enzyme-linked immunosorbent assay. O-glycosylation profiles in synovial fluid revealed both Core 1 and 2 O-glycans, with Core 1 O-glycans predominating. Synovial fluid from normal joints (49.5 ± 1.9%) contained significantly lower amounts of monosialylated Core 1 O-glycans compared with joints with osteoarthritis (53.8 ± 7.8%, P = 0.03) or joints with osteochondral fragments (57.3 ± 8.8%, P = 0.001). Additionally, synovial fluid from normal joints (26.7 ± 6.7%) showed higher amounts of disialylated Core 1 O-glycan than from joints with osteochondral fragments (21.2 ± 4.9%, P = 0.03). A C-terminal proteolytic cleavage site in lubricin was found in synovial fluid from normal and osteochondral fragment joints and in media from interleukin-1β stimulated and unstimulated articular cartilage explants. This is the first demonstration of a change in the glycosylation profile of lubricin in synovial fluid from diseased equine joints compared with that from normal joints. We demonstrate an identical proteolytic cleavage site of lubricin both in vitro and in vivo. The reduced sialation of lubricin in synovial fluid from diseased joints may affect the boundary lubricating ability of the superficial layer of articular cartilage and could be one of the early events in the progression of osteoarthritis. © 2015 EVJ Ltd.

Battling through the thermal boundary layer: Deep sampling in ODP Hole 1256D during IODP Expedition 335

NASA Astrophysics Data System (ADS)

Ildefonse, B.; Teagle, D. A.; Blum, P.; IODP Expedition 335 Scientists

2011-12-01

IODP Expedition 335 "Superfast Spreading Rate Crust 4" returned to ODP Hole 1256D with the intent of deepening this reference penetration of intact ocean crust several hundred meters into cumulate gabbros. This was the fourth cruise of the superfast campaign to understand the formation of oceanic crust accreted at fast spreading ridges, by exploiting the inverse relationship between spreading rate and the depth to low velocity zones seismically imaged at active mid-ocean zones, thought to be magma chambers. Site 1256 is located on 15-million-year-old crust formed at the East Pacific Rise during an episode of superfast ocean spreading (>200 mm/yr full rate). Three earlier cruises to Hole 1256D have drilled through the sediments, lavas and dikes and 100 m into a complex dike-gabbro transition zone. The specific objectives of IODP Expedition 335 were to: (1) test models of magmatic accretion at fast spreading ocean ridges; (2) quantify the vigor of hydrothermal cooling of the lower crust; (3) establish the geological meaning of the seismic Layer 2-3 boundary at Site 1256; and (4) estimate the contribution of lower crustal gabbros to marine magnetic anomalies. It was anticipated that even a shortened IODP Expedition could deepen Hole 1256D a significant distance (300 m) into cumulate gabbros. Operations on IODP Expedition 335 proved challenging from the outset with almost three weeks spent re-opening and securing unstable sections of the Hole. When coring commenced, the destruction of a hard-formation C9 rotary coring bit at the bottom of the hole required further remedial operations to remove junk and huge volumes of accumulated drill cuttings. Hole-cleaning operations using junk baskets returned large samples of a contact-metamorphic aureole between the sheeted dikes and a major heat source below. These large (up to 3.5 kg) irregular samples preserve magmatic, hydrothermal and structural relationships hitherto unseen because of the narrow diameter of drill core and previous poor core recovery. Including the ~60 m-thick zone of granoblastic dikes overlying the uppermost gabbro, the dike-gabbro transition zone at Site 1256 is over 170 m thick, of which more than 100 m are recrystallized granoblastic basalts. This zone records a dynamically evolving thermal boundary layer between the principally hydrothermal domain of the upper crust and a deeper zone of intrusive magmatism. The recovered samples document a sequence of evolving geological conditions and the intimate coupling between temporally and spatially intercalated intrusive, hydrothermal, contact-metamorphic, partial melting and retrogressive processes. Despite the operational challenges, we achieved a minor depth advance to 1522 m, but this was insufficient penetration to complete any of the primary objectives. However, Hole 1256D has been thoroughly cleared of junk and drill cuttings that have hampered operations during this and previous Expeditions. At the end of Expedition 335, we briefly resumed coring and stabilized problematic intervals with cement. Hole 1256D is open to its full depth and ready for further deepening in the near future.

Validation of SMAP surface soil moisture products with core validation sites

USDA-ARS?s Scientific Manuscript database

The NASA Soil Moisture Active Passive (SMAP) mission has utilized a set of core validation sites as the primary methodology in assessing the soil moisture retrieval algorithm performance. Those sites provide well-calibrated in situ soil moisture measurements within SMAP product grid pixels for diver...

Snake River Plain FORGE Well Data for USGS-142

DOE Data Explorer

Robert Podgorney

2015-11-23

Well data for the USGS-142 well located in eastern Snake River Plain, Idaho. This data collection includes lithology reports, borehole logs, and photos of rhyolite core samples. This collection of data has been assembled as part of the site characterization data used to develop the conceptual geologic model for the Snake River Plain site in Idaho, as part of phase 1 of the Frontier Observatory for Research in Geothermal Energy (FORGE) initiative. They were assembled by the Snake River Geothermal Consortium (SRGC), a team of collaborators that includes members from national laboratories, universities, industry, and federal agencies, lead by the Idaho National Laboratory (INL).

International Collaboration in Data Management for Scientific Ocean Drilling: Preserving Legacy Data While Implementing New Requirements.

NASA Astrophysics Data System (ADS)

Rack, F. R.

2005-12-01

The Integrated Ocean Drilling Program (IODP: 2003-2013 initial phase) is the successor to the Deep Sea Drilling Project (DSDP: 1968-1983) and the Ocean Drilling Program (ODP: 1985-2003). These earlier scientific drilling programs amassed collections of sediment and rock cores (over 300 kilometers stored in four repositories) and data organized in distributed databases and in print or electronic publications. International members of the IODP have established, through memoranda, the right to have access to: (1) all data, samples, scientific and technical results, all engineering plans, data or other information produced under contract to the program; and, (2) all data from geophysical and other site surveys performed in support of the program which are used for drilling planning. The challenge that faces the individual platform operators and management of IODP is to find the right balance and appropriate synergies among the needs, expectations and requirements of stakeholders. The evolving model for IODP database services consists of the management and integration of data collected onboard the various IODP platforms (including downhole logging and syn-cruise site survey information), legacy data from DSDP and ODP, data derived from post-cruise research and publications, and other IODP-relevant information types, to form a common, program-wide IODP information system (e.g., IODP Portal) which will be accessible to both researchers and the public. The JANUS relational database of ODP was introduced in 1997 and the bulk of ODP shipboard data has been migrated into this system, which is comprised of a relational data model consisting of over 450 tables. The JANUS database includes paleontological, lithostratigraphic, chemical, physical, sedimentological, and geophysical data from a global distribution of sites. For ODP Legs 100 through 210, and including IODP Expeditions 301 through 308, JANUS has been used to store data from 233,835 meters of core recovered, which are comprised of 38,039 cores, with 202,281 core sections stored in repositories, which have resulted in the taking of 2,299,180 samples for scientists and other users (http://iodp.tamu.edu/janusweb/general/dbtable.cgi). JANUS and other IODP databases are viewed as components of an evolving distributed network of databases, supported by metadata catalogs and middleware with XML workflows, that are intended to provide access to DSDP/ODP/IODP cores and sample-based data as well as other distributed geoscience data collections (e.g., CHRONOS, PetDB, SedDB). These data resources can be explored through the use of emerging data visualization environments, such as GeoWall, CoreWall (http://(www.evl.uic.edu/cavern/corewall), a multi-screen display for viewing cores and related data, GeoWall-2 and LambdaVision, a very-high resolution, networked environment for data exploration and visualization, and others. The U.S Implementing Organization (USIO) for the IODP, also known as the JOI Alliance, is a partnership between Joint Oceanographic Institutions (JOI), Texas A&M University, and Lamont-Doherty Earth Observatory of Columbia University. JOI is a consortium of 20 premier oceanographic research institutions that serves the U.S. scientific community by leading large-scale, global research programs in scientific ocean drilling and ocean observing. For more than 25 years, JOI has helped facilitate discovery and advance global understanding of the Earth and its oceans through excellence in program management.

Sediment-deposition rates and organic compounds in bottom sediment at four sites in Lake Mead, Nevada, May 1998

USGS Publications Warehouse

Covay, K.J.; Beck, D.A.

2001-01-01

In May 1998 the U.S. Geological Survey, in cooperation with the University of Nevada, Las Vegas, investigated rates of sediment deposition and concentrations of selected synthetic organic compounds at four sites in Lake Mead. Sediment cores were extracted from two sites (one shallow and one deep) in Las Vegas Bay, from one site in the Overton Arm, and from one site near the historic confluence of the Colorado and Virgin Rivers. The sediment cores were age-dated using cesium-137 and were analyzed for the presence of organochlorine compounds (pesticides and degradation products, polychlorinated biphenyls, dioxins, and furans) and for semivolatile organic compounds (polycyclic aromatic hydrocarbons and phenols). Sediment-deposition rates after impoundment of the Colorado River by Hoover Dam were determined by measuring the accumulation of mass during three different periods: (1) from the approximate impoundment date for each site (1935-37) to the initial occurrence of cesium-137 in the atmosphere (1952); (2) from 1952 to the maximum concentration of cesium-137 in the atmosphere (1964); and (3) from 1964 to the collection date of the sample (1998). Sediment-deposition rates for the entire post-impoundment period (1935-98) averaged 1.45 (g/cm2)/yr (grams per square centimeter per year) at the Las Vegas Bay shallow site, 1.25 (g/cm2)/yr at the Las Vegas Bay deep site, 0.80 (g/cm2)/yr at the Overton Arm site, and 0.65 (g/cm2)/yr at the Colorado and Virgin Rivers confluence site. Sediment-deposition rates after impoundment of the Colorado River by Hoover Dam were determined by measuring the accumulation of mass during three different periods: (1) from the approximate impoundment date for each site (1935-37) to the initial occurrence of cesium-137 in the atmosphere (1952); (2) from 1952 to the maximum concentration of cesium-137 in the atmosphere (1964); and (3) from 1964 to the collection date of the sample (1998). Sediment-deposition rates for the entire post-impoundment period (1935-98) averaged 1.45 (g/cm2)/yr (grams per square centimeter per year) at the Las Vegas Bay shallow site, 1.25 (g/cm2)/yr at the Las Vegas Bay deep site, 0.80 (g/cm2)/yr at the Overton Arm site, and 0.65 (g/cm2)/yr at the Colorado and Virgin Rivers confluence site. Total numbers of synthetic organic compounds detected in sediment samples were 48 at the Las Vegas Bay shallow site, 57 at the Las Vegas Bay deep site, 26 at the Overton Arm site, and 31 at the Colorado and Virgin Rivers confluence site. The most commonly detected organochlorine pesticide and polychlorinated biphenyl compounds were dichlorodiphenyldichloroethane and dichlorodiphenyldichloroethylene. The most commonly detected dioxin compounds were tetrachlorodibenzo-p-dioxin and octochlorodibenzo-p-dioxin. The most commonly detected furan compounds were tetrachlorodibenzofuran and octochlorodibenzofuran. The most commonly detected polycyclic aromatic hydrocarbons included perylene, benzo[g,h,i]perylene, 2,6-dimethylnaphthalene, and indeno[1,2,3-c,d]pyrene. The most commonly detected phenol compound was phenol.

Decadal to centennial oscillations in the upper and lower boundaries of the San Diego, California margin Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Myhre, S. E.; Hill, T. M.; Frieder, C.; Grupe, B.

2016-02-01

Here we present two new marine sediment archives from the continental margin of San Diego, California, USA, which record decadal to centennial oscillations in the hydrographic structure of the Eastern Pacific Oxygen Minimum Zone (OMZ). The two cores, located at 528 and 1,180 m water depth, record oceanographic history across overlapping timescales. Biotic communities, including Foraminifera, Echinodermata, Brachiopoda, Mollusca and Ostrocoda, were examined in subsurface (>10 cm sediment core depth) samples. Chronologies for both cores were developed with reservoir-corrected 14C dates of mixed planktonic Foraminifera and linearly interpolated sedimentation rates. Sediment ages for the cores range from 400-1,800 years before present. Indices of foraminiferal community density, diversity and evenness are applied as biotic proxies to track the intensification of the continental margin OMZ. Biotic communities at the shallower site reveal multi-decadal to centennial timescales of OMZ intensification, whereas the deeper site exhibits decadal to multi-decadal scales of hydrographic variability. Hypoxia-associated foraminiferal genera Uvigerina and Bolivina were compositionally dominant during intervals of peak foraminiferal density. Invertebrate assemblages often co-occurred across taxa groups, and thereby provide a broad trophic context for interpreting changes in the margin seafloor. Variability in the advection of Pacific Equatorial Water may mechanistically contribute to this described hydrographic variability. This investigation reconstructs historical timescales of OMZ intensification, seafloor ecological variability, and synchrony between open-ocean processes and regional climate.

Accretion rate of extraterrestrial matter: Iridium deposited over the last 70 million years

NASA Technical Reports Server (NTRS)

Kyte, Frank T.

1988-01-01

In order to quantify the accretion rate of extraterrestrial matter during the Cenozoic, Ir concentrations were measured in a continuous series of 450 samples across most of the length of piston core LL44-GPC3. LL44-GPC3 is a 25-meter-long, large-diameter piston core of abyssal clay from the central North Pacific. This core contains a nearly continuous record of sedimentation over the last 70 Ma, as this site migrated from a region near the Equator in the late Cretaceous to its present position north of Hawaii. The first-cut survey across the core is nearing completion, and all of the conclusions of the earlier study, in which was reported the concentrations of Ir, Co, and Sb across 9 meters of this core, remain unchanged. The only strongly enhanced Ir concentrations occur at the Cretaceous-Tertiary (K-T) boundary and outside the K-T boundary Ir correlates well with Co, a terrestrial element which is largely present in hydrogenous ferromanganese oxide precipitates from seawater. Concentrations of both elements appear to be inversely correlated with the sedimentation rate. Although the K-T Ir anomaly is unique in magnitude in this core, there are several small bumps in the Ir profile which may reflect smaller accretionary events. The most promising Ir enhancement was observed in a 30 cm section approximately 1 m below the K-T boundary. Preliminary data suggest deposition of an excess across this interval at a time estimate to be approximate 1 Ma before the K-T impact event, but there is insufficient evidence at present to prove that this reflects enhanced accretion of extraterrestrial matter. A detailed model is being prepared of the chemical record of sedimentation in this core using a combined database of 39 elements in approximately 450 samples across the Cenozoic. Preliminary working model indicates that the only sedimentary sources which contribute significantly to the Ir budget in this core are the hydrogenous precipitates and extraterrestrial particulates.

Surface sediment remobilization triggered by earthquakes in the Nankai forearc region

NASA Astrophysics Data System (ADS)

Okutsu, N.; Ashi, J.; Yamaguchi, A.; Irino, T.; Ikehara, K.; Kanamatsu, T.; Suganuma, Y.; Murayama, M.

2017-12-01

Submarine landslides triggered by earthquakes generate turbidity currents (e.g. Piper et al., 1988; 1999). Recently several studies report that the remobilization of the surface sediment triggered by earthquakes can also generate turbidity currents. However, studies that proposed such process are still limited (e.g. Ikehara et al., 2016; Mchugh et al., 2016; Moernaut et al., 2017). The purpose of this study is to examine those sedimentary processes in the Nankai forearc region, SW Japan using sedimentary records. We collected 46 cm-long multiple core (MC01) and a 6.7 m-long piston core (PC03) from the small basin during the R/V Shinsei Maru KS-14-8 cruise. The small confined basin, which is our study site, block the paths of direct sediment supply from river-submarine canyon system. The sampling site is located at the ENE-WSW elongated basin between the accretionary prism and the forearc basin off Kumano without direct sediment supply from river-submarine canyon system. The basin exhibits a confined basin that captures almost of sediments supplied from outside. Core samples are mainly composed of silty clay or very fine sand. Cs-137 measurement conducted on a MC01 core shows constantly high value at the upper 17 cm section and no detection below it. Moreover, the sedimentary structure is similar to fine-grained turbidite described by Stow and Shanmgam (1980), we interpret the upper 17 cm of MC01 as muddy turbidite. Grain size distribution and magnetic susceptibility also agree to this interpretation. Rapid sediment deposition after 1950 is assumed and the most likely event is the 2004 off Kii peninsula earthquakes (Mw=6.6-7.4). By calculation from extent of provenance area, which are estimated by paleocurrent analysis and bathymetric map, and thickness of turbidite layer we conclude that surface 1 cm of slope sediments may be remobilized by the 2004 earthquakes. Muddy turbidites are also identified in a PC03 core. The radiocarbon age gap of 170 years obtained around 2 mbsf of PC03 core also indicates similar sedimentary process. However, we also obtained large age gap in a thick turbidite layer, indicating remobilization of deeper sediments by landslide. Our results revealed that the studied basin recorded various scales and styles of sediment remobilizations by earthquake shakings.

Age depth model construction of the upper section of ICDP Dead Sea Deep Drilling Project based on the high-resolution 14C dating

NASA Astrophysics Data System (ADS)

Kitagawa, H.; Nakamura, T.; Neugebauer, I.; Schwab, M. J.; Brauer, A.; Goldstein, S. L.; Stein, M.

2014-12-01

To reconstruct environmental, climatic and tectonic histories of the Levant, a deep drilling has been accomplished in the northern basin of the Dead Sea during the fall winter of 2010-2011 by the Dead Sea Deep Drilling Project (DSDDP) in the framework of the ICDP program. The sediment cores from site 5017-1 (water depth of ~300 m) recorded the paleoenvironmental and paleohydrological changes in the Dead Sea and the Levant during the last two glacial-interglacial cycles (Neugebauer et al., QSR in press). To provide precise timing of sedimentological - limnological events in the lake and its watershed, and more critically the relative timing of these events, radiocarbon dating of >70 well-preserved terrestrial plants and some carbonate deposits from the upper 150 m long section of the sediment core were performed. Based on the high-resolution radiocarbon dating, a statistical age-depth model was constructed with assumptions on the deposition condition and the radiocarbon age offset of carbonate samples. We discuss the practicality and the limitation of the age-depth model toward interpreting the high-resolution records of environmental, climatic and tectonic events recorded in the long sediment cores from site 5017-1.

Systematics of Alkali Metals in Pore Fluids from Serpentinite Mud Volcanoes: IODP Expedition 366

NASA Astrophysics Data System (ADS)

Wheat, C. G.; Ryan, J.; Menzies, C. D.; Price, R. E.; Sissmann, O.

2017-12-01

IODP Expedition 366 focused, in part, on the study of geo­chemical cycling, matrix alteration, material and fluid transport, and deep biosphere processes within the subduction channel in the Mariana forearc. This was accomplished through integrated sampling of summit and flank regions of three active serpentinite mud volcanoes (Yinazao (Blue Moon), Asùt Tesoro (Big Blue), and Fantangisña (Celestial) Seamounts). These edifices present a transect of depths to the Pacific Plate, allowing one to characterize thermal, pressure and compositional effects on processes that are associated with the formation of serpentinite mud volcanoes and continued activity below and within them. Previous coring on ODP Legs 125 and 195 at two other serpentinite mud volcanoes (Conical and South Chamorro Seamounts) and piston, gravity, and push cores from several other Mariana serpentinite mud volcanoes add to this transect of sites where deep-sourced material is discharged at the seafloor. Pore waters (149 samples) were squeezed from serpentinite materials to determine the composition of deep-sourced fluid and to assess the character, extent, and effect of diagenetic reactions and mixing with seawater on the flanks of the seamounts as the serpentinite matrix weathers. In addition two Water Sampler Temperature Tool (WSTP) fluid samples were collected within two of the cased boreholes, each with at least 30 m of screened casing that allows formations fluids to discharge into the borehole. Shipboard results for Na and K record marked seamount-to-seamount differences in upwelling summit fluids, and complex systematics in fluids obtained from flank sites. Here we report new shore-based Rb and Cs measurements, two elements that have been used to constrain the temperature of the deep-sourced fluid. Data are consistent with earlier coring and drilling expeditions, resulting in systematic changes with depth (and by inference temperature) to the subduction channel.

Oxygen and hydrogen stable isotope content in daily-collected precipitation samples at Dome C, East Antarctica

NASA Astrophysics Data System (ADS)

Dreossi, Giuliano; Stenni, Barbara; Del Guasta, Massimo; Bonazza, Mattia; Grigioni, Paolo; Karlicek, Daniele; Mognato, Riccardo; Scarchilli, Claudio; Turchetti, Filippo; Zannoni, Daniele

2016-04-01

Antarctic ice cores allow to obtain exceptional past climate records, thanks to their water stable isotope content, which provides integrated tracers of the atmospheric water cycle and local climate. Low accumulation sites of the East Antarctic plateau provide the oldest ice core records, with the record-breaking EPICA Dome C drilling covering the last eight climate cycles. However, the isotope-temperature relationship, commonly used to derive the temperature, may be characterized by significant geographical and temporal variations. Moreover, post-depositional effects may further complicate the climate interpretation. A continuous series of precipitation data is needed in order to gain a better understanding of the factors affecting the water stable isotopes in Antarctic precipitation at a specific site. In this study, we use the first and so-far only multi-year series of daily precipitation sampling and isotope measurements from the French-Italian Concordia Station, located at Dome C in East Antarctica (75°06'S 123°21'E; elevation: 3233 m a.s.l.; mean annual temperature: -54.5°C; snow accumulation rate: 25 kg m-2 yr-1), where the oldest deep Antarctic ice core has been retrieved. Surface air temperature data have been provided by the US automatic weather station (AWS), placed 1.5 km away from the base, while tropospheric temperature profiles are obtained by means of a radiosonde, launched once per day by the IPEV/Italian Antarctic Meteo-climatological Observatory. The new dataset also enables us for the first time to study the isotope-temperature relationship distinguishing between different types of precipitation, namely diamond dust, hoar frost and snowfall, identified by the observations carried out by the winter-over personnel collecting the snow samples. Here we present the complete data series of water stable isotopes in precipitation at Dome C spanning the time period from 2008 to 2014, in the framework of the PNRA PRE-REC project.

Contaminant behavior in fractured sedimentary rocks: Seeing the fractures that matter

NASA Astrophysics Data System (ADS)

Parker, B. L.

2017-12-01

High resolution spatial sampling of continuous cores from sites contaminated with chlorinated solvents over many decades was used as a strategy to quantify mass stored in low permeability blocks of rock between hydraulically active fractures. Given that core and geophysical logging methods cannot distinguish between hydraulically active fractures and those that do not transmit water, these samples were informed by careful logging of visible fracture features in the core with sample spacing determined by modelled diffusion transport distances given rock matrix properties and expected ages of contamination. These high resolution contaminant concentration profiles from long term contaminated sites in sedimentary rock showed evidence of many more hydraulically active fractures than indicated by the most sophisticated open-hole logging methods. Fracture density is an important attribute affecting fracture connectivity and influencing contaminant plume evolution in fractured porous sedimentary rock. These contaminant profile findings were motivation to find new borehole methods to directly measure hydraulically active fracture occurrence and flux to corroborate the long term "DNAPL tracer experiment" results. Improved sensitivity is obtained when boreholes are sealed using flexible fabric liners (FLUTeTM technology) and various sensor options are deployed in the static water columns used to inflate these liners or in contact with the borehole wall behind the liners. Several methods rely on high resolution temperature measurements of ambient or induced temperature variability such as temperature vector probes (TVP), fiber optic cables for distributed temperature sensing (DTS), both using active heat; packer testing, point dilution testing and groundwater flux measurements between multiple straddle packers to account for leakage. In all cases, numerous hydraulically active fractures are identified over 100 to 300 meters depth, with a large range in transmissivities and hydraulic apertures to inform discrete fracture flow and transport models. 3-D field mapping of decades-old contaminant plumes in sedimentary aquifers shows that numerous hydraulically active fractures are needed to reproduce observed plume concentration distributions and allow targeted monitoring and remediation.

Response of Tree Rings Growth to Various Climatological Indices in the Sierra Nevada Mountains

NASA Astrophysics Data System (ADS)

Shamir, E.; Kaliff, R.; Graham, R.; Lepley, K. S.; Meko, D. M.; Touchan, R.

2017-12-01

Tree rings properties have been used to reconstruct historic regional climatological proxies. In this study, we examine whether tree rings can inform us on the basin scale spatial variability of the snow pack and soil moisture. Cores from seven sites and nine tree species of conifers were sampled in a vertical transect along the American River watershed at the Sierra Nevada Mountains. The tree cores were then cross-dated and chronologies of total ring width, early wood width, late wood width and late wood density measured by blue intensity methodology were developed. For each sampling site, a high-resolution land surface model was implemented to simulate 6-hour climatological time series of snow and soil moisture that are congruent in time and space for 1912- 2016. These time series were then used to derive independent indices that represent key climatological features that were thought to impact the tree growth. These indices include for example the duration of the dormancy season (winter), the duration of the growth season (spring), the duration of the dry season (summer) and the available seasonal soil moisture at the root zone. A comprehensive analysis of these indices with respect to the tree chronologies revealed that although different sites responded differently to these indices, all the sites were relatively insensitive to the winter temperature. Initial results suggest that warming condition and early spring onset as during the recent (2012-2015) drought increase growth in the high elevation that had a short winter with ample moisture while suppressing growth in lower elevation that experiences long dry summers. It is also interesting to note that the growth at the high elevation sites was found to be associated with the available moisture from the previous year, while in lower elevations growth responded to moisture conditions of the current year.

Evaluation of dredged material proposed for ocean disposal from Bronx River Project Area, New York

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gruendell, B.D.; Gardiner, W.W.; Antrim, L.D.

1996-12-01

The objective of the Bronx River project was to evaluate proposed dredged material from the Bronx River project area in Bronx, New York, to determine its suitability for unconfined ocean disposal at the Mud Dump Site. Bronx River was one of five waterways that the US Army Corps of Engineers-New York District (USAGE-NYD) requested the Battelle Marine Sciences Laboratory (MSL) to sample and to evaluate for dredging and disposal. Sediment samples were submitted for physical and chemical analyses, chemical analyses of dredging site water and elutriate, benthic and water-column acute toxicity tests, and bioaccumulation studies. Fifteen individual sediment core samplesmore » collected from the Bronx River project area were analyzed for grain size, moisture content, and total organic carbon (TOC). One composite sediment sample, representing the entire reach of the area proposed for dredging, was analyzed for bulk density, specific gravity, metals, chlorinated pesticides, polychlorinated biphenyl (PCB) congeners, polynuclear aromatic hydrocarbons (PAH), and 1,4- dichlorobenzene. Dredging site water and elutriate water, which was prepared from the suspended-particulate phase (SPP) of the Bronx River sediment composite, were analyzed for metals, pesticides, and PCBS.« less

Late Holocene environmental changes in a mesotidal estuary from Patagonia, Argentina

NASA Astrophysics Data System (ADS)

Espinosa, Marcela; Escandell, Alejandra; Velez Agudelo, Camilo

2016-04-01

Two sediment records from the lower valley of Negro River, Patagonia, Argentina (41°01´S; 62°47'W) spanning for the last 2000 cal yrs BP were analyzed according to diatoms and sediments contents. The river originates at the junction of the Neuquén and the Limay Rivers, Northern Patagonia, and discharges more than 1000 m3/s to the South Atlantic Ocean. Mesotidal conditions dominate at the inlet (2.95 m) affecting the lower valley (about 20 km) where salinity decreases drastically in the last 2 km. Fossil diatom assemblages and grain size were studied from two cores located at 1.5 km (Villarino site) and 12 km (Criadero site) from the inlet. Samples for modern diatom analyses were collected from the littoral zone at eleven sites along the river. Physical and chemical variables were quantified representing the maximum heterogeneity along the aquatic environment. Turbidity, salinity, conductivity, pH and temperature data were obtained in situ during summer and winter. In addition, a surface sediment sample was taken for grain size analysis and organic matter content, and water samples were taken to analyze nutrients and major ions following standard methods. The diatom content of modern sediment samples were studied in order to achieve ecological information useful as modern analogous for Patagonian rivers. Diatom zones were characterized by constrained incremental sum of squares cluster analysis (single linkage, Euclidean distance) in the fossil sequences. Fossil and modern diatom assemblages were compared with Detrended Correspondence Analysis (DCA). A total of 77 samples (modern and fossils) were analyzed and more than 200 taxa were identified. Diatom assemblages showed distinct abundance patterns in relation to salinity with a shift from communities dominated by marine/brackish taxa in lower sites to communities dominated by freshwater taxa in the middle and upper course of the river. The record of Criadero core (12 km from the inlet) began 2000 cal yrs BP with a shallow vegetated brackish/freshwater environment represented by Surirella brebissonii, Epithemia adnata and Rhopalodia gibba. The environment evolved gradually into marine conditions with dominance of Paralia sulcata, Delphineis surirella, Raphoneis amphiceros and Cymatosira belgica (tidal channel). Finally, marine brackish aerophilous taxa indicate the development of a saltmarsh. Villarino core (1.5 km from the inlet) represents the infilling of the estuary during the last 1300 cal yrs BP with the dominance of the marine/brackish tychoplankton taxa Paralia sulcata. The fossil assemblages of the two studied sequences showed similarity with modern assemblages of the lower valley of the river. Considering the strong influence of salinity changes on diatom assemblages, tidal effects are the main controlling factor for the composition and distribution of diatoms along mesotidal estuaries from Patagonia. The knowledge of palaeoenvironmental conditions derived from fossil diatom assemblages is very important to infer man-made changes in coastal areas and can be used as reference for the assessment of recent coastal changes (dredging, harbour construction, flood control improvements, pollution).

Chromium(VI) generation in vadose zone soils and alluvial sediments of the southwestern Sacramento Valley, California: a potential source of geogenic Cr(VI) to groundwater

USGS Publications Warehouse

Mills, Christopher T.; Morrison, Jean M.; Goldhaber, Martin B.; Ellefsen, Karl J.

2011-01-01

Concentrations of geogenic Cr(VI) in groundwater that exceed the World Health Organization’s maximum contaminant level for drinking water (50 μg L−1) occur in several locations globally. The major mechanism for mobilization of this Cr(VI) at these sites is the weathering of Cr(III) from ultramafic rocks and its subsequent oxidation on Mn oxides. This process may be occurring in the southern Sacramento Valley of California where Cr(VI) concentrations in groundwater can approach or exceed 50 μg L−1. To characterize Cr geochemistry in the area, samples from several soil auger cores (approximately 4 m deep) and drill cores (approximately 25 m deep) were analyzed for total concentrations of 44 major, minor and trace elements, Cr associated with labile Mn and Fe oxides, and Cr(VI). Total concentrations of Cr in these samples ranged from 140 to 2220 mg per kg soil. Between 9 and 70 mg per kg soil was released by selective extractions that target Fe oxides, but essentially no Cr was associated with the abundant reactive Mn oxides (up to ~1000 mg hydroxylamine-reducible Mn per kg soil was present). Both borehole magnetic susceptibility surveys performed at some of the drill core sites and relative differences between Cr released in a 4-acid digestion versus total Cr (lithium metaborate fusion digestion) suggest that the majority of total Cr in the samples is present in refractory chromite minerals transported from ultramafic exposures in the Coast Range Mountains. Chromium(VI) in the samples studied ranged from 0 to 42 μg kg−1, representing a minute fraction of total Cr. Chromium(VI) content was typically below detection in surface soils (top 10 cm) where soil organic matter was high, and increased with increasing depth in the soil auger cores as organic matter decreased. Maximum concentrations of Cr(VI) were up to 3 times greater in the deeper drill core samples than the shallow auger cores. Although Cr(VI) in these vadose zone soils and sediments was only a very small fraction of the total solid phase Cr, they are a potentially important source for Cr(VI) to groundwater. Enhanced groundwater recharge through the vadose zone due to irrigation could carry Cr(VI) from the vadose zone to the groundwater and may be the mechanism responsible for the correlation observed between elevated Cr(VI) and NO3- source concentrations in previously published data for valley groundwaters. Incubation of a valley subsoil showed a Cr(VI) production rate of 24 μg kg−1 a−1 suggesting that field Cr(VI) concentrations could be regenerated annually. Increased Cr(VI) production rates in H+-amended soil incubations indicate that soil acidification processes such as nitrification of ammonium in fertilizers could potentially increase the occurrence of geogenic Cr(VI) in groundwater. Thus, despite the natural origin of the Cr, Cr(VI) generation in the Sacramento Valley soils and sediments has the potential to be influenced by human activities.

Mechanical Alteration And Contamination Issues In Automated Subsurface Sample Acquisition And Handling

NASA Astrophysics Data System (ADS)

Glass, B. J.; Cannon, H.; Bonaccorsi, R.; Zacny, K.

2006-12-01

The Drilling Automation for Mars Exploration (DAME) project's purpose is to develop and field-test drilling automation and robotics technologies for projected use in missions in the 2011-15 period. DAME includes control of the drilling hardware, and state estimation of both the hardware and the lithography being drilled and the state of the hole. A sister drill was constructed for the Mars Analog Río Tinto Experiment (MARTE) project and demonstrated automated core handling and string changeout in 2005 drilling tests at Rio Tinto, Spain. DAME focused instead on the problem of drill control while actively drilling while not getting stuck. Together, the DAME and MARTE projects demonstrate a fully automated robotic drilling capability, including hands-off drilling, adjustment to different strata and downhole conditions, recovery from drilling faults (binding, choking, etc.), drill string changeouts, core acquisition and removal, and sample handling and conveyance to in-situ instruments. The 2006 top-level goal of DAME drilling in-situ tests was to verify and demonstrate a capability for hands-off automated drilling, at an Arctic Mars-analog site. There were three sets of 2006 test goals, all of which were exceeded during the July 2006 field season. The first was to demonstrate the recognition, while drilling, of at least three of the six known major fault modes for the DAME planetary-prototype drill, and to employ the correct recovery or safing procedure in response. The second set of 2006 goals was to operate for three or more hours autonomously, hands-off. And the third 2006 goal was to exceed 3m depth into the frozen breccia and permafrost with the DAME drill (it had not gone further than 2.2m previously). Five of six faults were detected and corrected, there were 43 hours of hands-off drilling (including a 4 hour sequence with no human presence nearby), and 3.2m was the total depth. And ground truth drilling used small commercial drilling equipment in parallel in order to obtain cores and ice profiles at the drilling site. In the course of DAME drilling automation testing, the drilling-induced temperature gradients and their effects on encountered subsurface permafrost and ice layers were observed while drilling in frozen impact breccia at Haughton Crater. In repeated tests of robotic core removal processing and handling in the MARTE project, including field tests, cross-contamination issues arose between successive cores and samples, and procedures and metrics were developed for minimizing the cross-contamination. The MARTE core processing cross-contamination aspects were tested by analyzing a set of pristine samples (those stratigraphically known) vs. cuttings (loose clays) or artifacts from the robotic drilling (indurated clay layers). MARTE ground truth drilling, in parallel with the automated tests, provided control information on the discontinuity/continuity of the stratigraphic record (i.e., texture, color and structure of loose and consolidated materials).

High-resolution delineation of chlorinated volatile organic compounds in a dipping, fractured mudstone: Depth- and strata-dependent spatial variability from rock-core sampling

NASA Astrophysics Data System (ADS)

Goode, Daniel J.; Imbrigiotta, Thomas E.; Lacombe, Pierre J.

2014-12-01

Synthesis of rock-core sampling and chlorinated volatile organic compound (CVOC) analysis at five coreholes, with hydraulic and water-quality monitoring and a detailed hydrogeologic framework, was used to characterize the fine-scale distribution of CVOCs in dipping, fractured mudstones of the Lockatong Formation of Triassic age, of the Newark Basin in West Trenton, New Jersey. From these results, a refined conceptual model for more than 55 years of migration of CVOCs and depth- and strata-dependent rock-matrix contamination was developed. Industrial use of trichloroethene (TCE) at the former Naval Air Warfare Center (NAWC) from 1953 to 1995 resulted in dense non-aqueous phase liquid (DNAPL) TCE and dissolved TCE and related breakdown products, including other CVOCs, in underlying mudstones. Shallow highly weathered and fractured strata overlie unweathered, gently dipping, fractured strata that become progressively less fractured with depth. The unweathered lithology includes black highly fractured (fissile) carbon-rich strata, gray mildly fractured thinly layered (laminated) strata, and light-gray weakly fractured massive strata. CVOC concentrations in water samples pumped from the shallow weathered and highly fractured strata remain elevated near residual DNAPL TCE, but dilution by uncontaminated recharge, and other natural and engineered attenuation processes, have substantially reduced concentrations along flow paths removed from sources and residual DNAPL. CVOCs also were detected in most rock-core samples in source areas in shallow wells. In many locations, lower aqueous concentrations, compared to rock core concentrations, suggest that CVOCs are presently back-diffusing from the rock matrix. Below the weathered and highly fractured strata, and to depths of at least 50 meters (m), groundwater flow and contaminant transport is primarily in bedding-plane-oriented fractures in thin fissile high-carbon strata, and in fractured, laminated strata of the gently dipping mudstones. Despite more than 18 years of pump and treat (P&T) remediation, and natural attenuation processes, CVOC concentrations in aqueous samples pumped from these deeper strata remain elevated in isolated intervals. DNAPL was detected in one borehole during coring at a depth of 27 m. In contrast to core samples from the weathered zone, concentrations in core samples from deeper unweathered and unfractured strata are typically below detection. However, high CVOC concentrations were found in isolated samples from fissile black carbon-rich strata and fractured gray laminated strata. Aqueous-phase concentrations were correspondingly high in samples pumped from these strata via short-interval wells or packer-isolated zones in long boreholes. A refined conceptual site model considers that prior to P&T remediation groundwater flow was primarily subhorizontal in the higher-permeability near surface strata, and the bulk of contaminant mass was shallow. CVOCs diffused into these fractured and weathered mudstones. DNAPL and high concentrations of CVOCs migrated slowly down in deeper unweathered strata, primarily along isolated dipping bedding-plane fractures. After P&T began in 1995, using wells open to both shallow and deep strata, downward transport of dissolved CVOCs accelerated. Diffusion of TCE and other CVOCs from deeper fractures penetrated only a few centimeters into the unweathered rock matrix, likely due to sorption of CVOCs on rock organic carbon. Remediation in the deep, unweathered strata may benefit from the relatively limited migration of CVOCs into the rock matrix. Synthesis of rock core sampling from closely spaced boreholes with geophysical logging and hydraulic testing improves understanding of the controls on CVOC delineation and informs remediation design and monitoring.

High-resolution delineation of chlorinated volatile organic compounds in a dipping, fractured mudstone: depth- and strata-dependent spatial variability from rock-core sampling

USGS Publications Warehouse

Goode, Daniel J.; Imbrigiotta, Thomas E.; Lacombe, Pierre J.

2014-01-01

Synthesis of rock-core sampling and chlorinated volatile organic compound (CVOC) analysis at five coreholes, with hydraulic and water-quality monitoring and a detailed hydrogeologic framework, was used to characterize the fine-scale distribution of CVOCs in dipping, fractured mudstones of the Lockatong Formation of Triassic age, of the Newark Basin in West Trenton, New Jersey. From these results, a refined conceptual model for more than 55 years of migration of CVOCs and depth- and strata-dependent rock-matrix contamination was developed. Industrial use of trichloroethene (TCE) at the former Naval Air Warfare Center (NAWC) from 1953 to 1995 resulted in dense non-aqueous phase liquid (DNAPL) TCE and dissolved TCE and related breakdown products, including other CVOCs, in underlying mudstones. Shallow highly weathered and fractured strata overlie unweathered, gently dipping, fractured strata that become progressively less fractured with depth. The unweathered lithology includes black highly fractured (fissile) carbon-rich strata, gray mildly fractured thinly layered (laminated) strata, and light-gray weakly fractured massive strata. CVOC concentrations in water samples pumped from the shallow weathered and highly fractured strata remain elevated near residual DNAPL TCE, but dilution by uncontaminated recharge, and other natural and engineered attenuation processes, have substantially reduced concentrations along flow paths removed from sources and residual DNAPL. CVOCs also were detected in most rock-core samples in source areas in shallow wells. In many locations, lower aqueous concentrations, compared to rock core concentrations, suggest that CVOCs are presently back-diffusing from the rock matrix. Below the weathered and highly fractured strata, and to depths of at least 50 meters (m), groundwater flow and contaminant transport is primarily in bedding-plane-oriented fractures in thin fissile high-carbon strata, and in fractured, laminated strata of the gently dipping mudstones. Despite more than 18 years of pump and treat (P&T) remediation, and natural attenuation processes, CVOC concentrations in aqueous samples pumped from these deeper strata remain elevated in isolated intervals. DNAPL was detected in one borehole during coring at a depth of 27 m. In contrast to core samples from the weathered zone, concentrations in core samples from deeper unweathered and unfractured strata are typically below detection. However, high CVOC concentrations were found in isolated samples from fissile black carbon-rich strata and fractured gray laminated strata. Aqueous-phase concentrations were correspondingly high in samples pumped from these strata via short-interval wells or packer-isolated zones in long boreholes. A refined conceptual site model considers that prior to P&T remediation groundwater flow was primarily subhorizontal in the higher-permeability near surface strata, and the bulk of contaminant mass was shallow. CVOCs diffused into these fractured and weathered mudstones. DNAPL and high concentrations of CVOCs migrated slowly down in deeper unweathered strata, primarily along isolated dipping bedding-plane fractures. After P&T began in 1995, using wells open to both shallow and deep strata, downward transport of dissolved CVOCs accelerated. Diffusion of TCE and other CVOCs from deeper fractures penetrated only a few centimeters into the unweathered rock matrix, likely due to sorption of CVOCs on rock organic carbon. Remediation in the deep, unweathered strata may benefit from the relatively limited migration of CVOCs into the rock matrix. Synthesis of rock core sampling from closely spaced boreholes with geophysical logging and hydraulic testing improves understanding of the controls on CVOC delineation and informs remediation design and monitoring.

Laguna Potrok Aike, Argentina: the first non-tropical environmental record in South America extending far beyond the Late-Glacial - a progress report

NASA Astrophysics Data System (ADS)

Zolitschka, B.; Anselmetti, F.; Ariztegui, D.; Corbella, H.; Francus, P.; Gebhardt, C.; Lücke, A.; Ohlendorf, C.; Schäbitz, F.; Pasado Science Team

2009-04-01

Within the framework of the ICDP-funded "Potrok Aike maar lake sediment archive drilling project" (PASADO) an international team of scientists carried out interdisciplinary research at the unique mid-Pleistocene (770 ka) maar lake of Laguna Potrok Aike in southern Patagonia (Province of Santa Cruz, Argentina). This lake is very sensitive to variations in southern hemispheric wind and pressure systems and thus holds a unique and continuous lacustrine record of climatic and ecological variability of global significance. Moreover, Southern Patagonia with its many active volcanoes is an ideal location to better understand the regional history of volcanism. These are two challenging geo-scientific themes that need to be tackled, especially as both of them have an increasing socio-economic relevance. Three months of drilling activities that finished last November 2008 were carried out by DOSECC from the drilling platform R/V "Kerry Kelts". More than 500 m of lacustrine sediments were recovered. This sedimentary archive will provide (1) new insights into the processes of regional back arc volcanism within the Pali Aike Volcanic Field itself as well as the more distant explosive volcanism of the Andean mountain chains; and, (2) high-resolution (decadal) quantitative climate and environmental reconstructions supported by multiple dating and stratigraphic correlations. Marine - ice core - terrestrial linkages will be emphasized as well as the incorporation of results from global climate modelling simulations for the last ca. 100 ka. The two drilled sites in the central deep basin of Laguna Potrok Aike have been selected based on four seismic surveys carried out between 2003 and 2005. Sediments were recovered at both drilled sites down to a subbottom depth of slightly more than 100 m using the GLAD800 drill rig with the hydraulic piston corer tool (HPC) at water depths varying between 95 and 100 m. The total core recovery is 94%. On-site core logging with the multi sensor core logger (MSCL) documents an excellent correlation between the four recovered holes drilled at Site 1 as well as with the three holes obtained from Site 2 which is located ca. 700 m south of Site 1. Additionally, a variety of sedimentological, physical and geochemical analyses were carried out on the core catcher samples in the field laboratory. Preliminary interpretation of all data that is available before core opening indicates that the record may go back in time as far as to the ending of oxygen isotope stage 5. Acknowledgements This research is supported by the International Continental Scientific Drilling Program (ICDP) in the framework of the "Potrok Aike Maar Lake Sediment Archive Drilling Project" (PASADO). Funding was provided by the ICDP, the German Science Foundation (DFG), the Swiss National Science Foundation (SNF), the Natural Sciences and Engineering Research Council of Canada (NSERC), the Swedish Vetenskapsradet (VR) and the University of Bremen.

Organic Geochemistry of Sediments in Nearshore Areas of the Mississippi and Atchafalaya Rivers: I. General Organic Characterization

USGS Publications Warehouse

Orem, William H.; Rosenbauer, Robert J.; Swarzenski, Peter W.; Lerch, Harry E.; Corum, Margo D.; Bates, Anne L.

2007-01-01

This report presents results on the general organic characteristics of sediment cores collected from the coastal zone of the Mississippi River system, including distributions of the important nutrient elements (C, N, P, and S). This was part of a larger study conducted from 2001-2005 to examine the delivery of sediment-associated contaminants to the Gulf of Mexico by the Mississippi River system, funded by the USGS Coastal and Marine Geology Program. Companion reports emphasize organic contaminants (Rosenbauer and others, 2006), and metals (Swarzenski and others, 2006). The level of contamination within the deltaic system of the Mississippi River system was determined through the collection of sediment cores from interdistributary bays, and offshore in the Gulf of Mexico, including the zone of hypoxia. Results provide the basis for reconstructing contaminant inventories from which to develop historic perspectives on nutrient loading and hypoxia, and to better understand how sediment-hosted contaminants either directly or indirectly move through biota and ultimately affect ecosystem health. Concentrations of C, N, P, and S in sediments varied by a factor of 10 between sites, and in down core profiles. Nearshore cores collected in 2001 proved to have erratic downcore C, N, P, and S profiles and sediment deposition rates, suggesting a high energy regime controlled more by variability in river flow rather than by geochemical processes and reactions within the system. These results focused further coring activities further offshore. Atomic C/N ratios suggest that organic matter deposited at all sites is a mix of microbial (algal) and terrestrial (vascular plant) remains, but with algal material dominant. Concentrations of total sulfur in sediments from cores in the zone of hypoxia were often higher than those in nearby zones with oxic water columns. Corresponding atomic C/S ratios were typically lower in sediments from sites in the zone of hypoxia compared to nearby sites with oxic water columns, and thus atomic C/S values may be useful as a proxy for identifying sites impacted by hypoxic conditions in the water column and for examining historical trends in hypoxia. At one site examined in this study, maximum hypoxic conditions were observed in the mid 1960's. The organic elemental composition (C, N, P, and S) of sediments was also used to guide sample selection for contaminant analysis, and to normalize the contaminant data to organic C content of the sediments. Dissolved hydrocarbon gases in sediments showed a dominance of methane, but identifiable concentrations of ethane and hexane, and trace concentrations of propane, butane, and pentane were also detected. All dissolved gases except hexane were dominated by 'bound' gas, gas released only after agitation of the sediment in a blender. Hexane, in contrast was observed mostly as free gas, determined by headspace analysis.

Preparation and recognition of surface molecularly imprinted core-shell microbeads for protein in aqueous solutions

NASA Astrophysics Data System (ADS)

Lu, Yan; Yan, Chang-Ling; Gao, Shu-Yan

2009-04-01

In this paper, a surface molecular imprinting technique was reported for preparing core-shell microbeads of protein imprinting, and bovine hemoglobin or bovine serum albumin were used as model proteins for studying the imprinted core-shell microbeads. 3-Aminophenylboronic acid (APBA) was polymerized onto the surface of polystyrene microbead in the presence of the protein templates to create protein-imprinted core-shell microbeads. The various samples were characterized using scanning electron microscopy (SEM), transmission electron microscopy (TEM), Raman spectroscopy, X-ray photoelectron spectroscopy (XPS) and Brunauer-Emmett-Teller (BET) methods. The effect of pH on rebinding of the template hemoglobin, the specific binding and selective recognition were studied for the imprinted microbeads. The results show that the bovine hemoglobin-imprinted core-shell microbeads were successfully created. The shell was a sort of imprinted thin films with porous structure and larger surface areas. The imprinted microbeads have good selectivity for templates and high stability. Due to the recognition sites locating at or closing to the surface, these imprinted microbeads have good property of mass-transport. Unfortunately, the imprint technology was not successfully applied to imprinting bovine serum albumin (BSA).

Arsenic geochemistry of alluvial sediments and pore waters affected by mine tailings along the Belle Fourche and Cheyenne River floodplains

USGS Publications Warehouse

Pfeifle, Bryce D.; Stamm, John F.; Stone, James J.

2018-01-01

Gold mining operations in the northern Black Hills of South Dakota resulted in the discharge of arsenopyrite-bearing mine tailings into Whitewood Creek from 1876 to 1977. Those tailings were transported further downstream along the Belle Fourche River, the Cheyenne River, and the Missouri River. An estimated 110 million metric tons of tailings remain stored in alluvial deposits of the Belle Fourche and Cheyenne Rivers. Pore-water dialysis samplers were deployed in the channel and backwaters of the Belle Fourche and Cheyenne Rivers to determine temporal and seasonal changes in the geochemistry of groundwater in alluvial sediments. Alluvial sediment adjacent to the dialysis samplers were cored for geochemical analysis. In comparison to US Environmental Protection Agency drinking water standards and reference concentrations of alluvial sediment not containing mine tailings, the Belle Fourche River sites had elevated concentrations of arsenic in pore water (2570 μg/L compared to 10 μg/L) and sediment (1010 ppm compared to < 34 ppm), respectively. Pore water arsenic concentration was affected by dissolution of iron oxyhydroxides under reducing conditions. Sequential extraction of iron and arsenic from sediment cores indicates that substantial quantities of soluble metals were present. Dissolution of arsenic sorbed to alluvial sediment particles appears to be affected by changing groundwater levels that cause shifts in redox conditions. Bioreductive processes did not appear to be a substantial transport pathway but could affect speciation of arsenic, especially at the Cheyenne River sampling sites where microbial activity was determined to be greater than at Belle Fourche sampling sites.

Polychlorinated biphenyls in two salt marsh sediments of the Venice Lagoon.

PubMed

Mugnai, Cristian; Giuliani, Silvia; Bellucci, Luca G; Carraro, Claudio; Favotto, Maurizio; Frignani, Mauro

2011-10-01

Polychlorinated biphenyls (PCBs) were measured in two dated salt marsh cores of the Venice Lagoon to assess their input chronology and to evaluate the importance of atmospheric deposition as a source. Sampling sites were chosen in order to evidence the differences between areas located leeward and windward with respect to inputs originating in both the city of Venice and the industrial area. Concentrations of PCB indicators (0.13-15.6 ng g⁻¹) increased gradually from the 1930s, reached maxima from the 1950s to the late 1970s, and then decreased. PCB loadings to marshes are driven by both the atmospheric deposition and the resuspension of subtidal sediments, this latter being more important for heavier congeners. The downwind marsh recorded higher fluxes (0.06-9.72 ng cm⁻² year⁻¹) than the upwind one (0.01-0.53 ng cm⁻² year⁻¹). Recent fluxes are rather consistent with bulk deposition measurements. A higher contribution of CB-101 and CB-118 was detected in the intermediate layers of the downwind site, suggesting a different PCB source for the corresponding time interval. In the other marsh, PCBs showed a rather constant composition at all levels (mostly CB-153, CB-138 and CB-180), accounting for a regional influence. Deep layers showed an enrichment of higher chlorinated congeners at both sites, whereas recent samples conserve the patterns typical of surficial and subsurficial subtidal sediments. The scientific approach adopted in this research can be considered as a sort of methodological procedure for the determination of fluxes and pathways of PCBs through the study of marsh cores.

PAH concentrations in lake sediment decline following ban on coal-tar-based pavement sealants in Austin, Texas

USGS Publications Warehouse

Van Metre, Peter C.; Mahler, Barbara J.

2013-01-01

Recent studies have concluded that coal-tar-based pavement sealants are a major source of polycyclic aromatic hydrocarbons (PAHs) in urban settings in large parts of the United States. In 2006, Austin, TX, became the first jurisdiction in the U.S. to ban the use of coal-tar sealants. We evaluated the effect of Austin’s ban by analyzing PAHs in sediment cores and bottom-sediment samples collected in 1998, 2000, 2001, 2012, and 2014 from Lady Bird Lake, the principal receiving water body for Austin urban runoff. The sum concentration of the 16 EPA Priority Pollutant PAHs (∑PAH16) in dated core intervals and surficial bottom-sediment samples collected from sites in the lower lake declined about 44% from 1998–2005 to 2006–2014 (means of 7980 and 4500 μg kg–1, respectively), and by 2012–2014, the decline was about 58% (mean of 3320 μg kg–1). Concentrations of ∑PAH16 in bottom sediment from two of three mid-lake sites decreased by about 71 and 35% from 2001 to 2014. Concentrations at a third site increased by about 14% from 2001 to 2014. The decreases since 2006 reverse a 40-year (1959–1998) upward trend. Despite declines in PAH concentrations, PAH profiles and source-receptor modeling results indicate that coal-tar sealants remain the largest PAH source to the lake, implying that PAH concentrations likely will continue to decline as stocks of previously applied sealant gradually become depleted.

Historical CO2 Records from the Law Dome DE08, DE08-2, and DSS Ice Cores (1006 A.D.-1978 A.D)

DOE Data Explorer

Etheridge, D. M. [Commonwealth Scientific and Industrial Research Organization (CSIRO), Aspendale, Australia; Barnola, J. M. [Laboratoire de Glaciologie et Géophysique de l'Environnement, Saint Martin d'Hères-Cedex, France; Morgan, V. I. [Antarctic CRC and Australian Antarctic Division, Hobart, Tasmania, Australia; Steele, L. P. [Commonwealth Scientific and Industrial Research Organization (CSIRO), Aspendale, Australia; Langenfelds, R. L. [Commonwealth Scientific and Industrial Research Organization (CSIRO), Aspendale, Australia; Francey, R. J. [Commonwealth Scientific and Industrial Research Organization (CSIRO), Aspendale, Australia; Martinez, Monica [Oak Ridge National Laboratory, Oak Ridge, TN (USA)

1998-01-01

The CO2 records presented here are derived from three ice cores obtained at Law Dome, East Antarctica from 1987 to 1993. The Law Dome site satisfies many of the desirable characteristics of an ideal ice core site for atmospheric CO2 reconstructions including negligible melting of the ice sheet surface, low concentrations of impurities, regular stratigraphic layering undisturbed at the surface by wind or at depth by ice flow, and high snow accumulation rate. Further details on the site, drilling, and cores are provided in Etheridge et al. (1996), Etheridge and Wookey (1989), and Morgan et al (1997).

A carbon, nitrogen, and sulfur elemental and isotopic study in dated sediment cores from the Louisiana Shelf

USGS Publications Warehouse

Rosenbauer, R.J.; Swarzenski, P.W.; Kendall, C.; Orem, W.H.; Hostettler, F.D.; Rollog, M.E.

2009-01-01

Three sediment cores were collected off the Mississippi River delta on the Louisiana Shelf at sites that are variably influenced by recurring, summer-time water-column hypoxia and fluvial loadings. The cores, with established chronology, were analyzed for their respective carbon, nitrogen, and sulfur elemental and isotopic composition to examine variable organic matter inputs, and to assess the sediment record for possible evidence of hypoxic events. Sediment from site MRJ03-3, which is located close to the Mississippi Canyon and generally not influenced by summer-time hypoxia, is typical of marine sediment in that it contains mostly marine algae and fine-grained material from the erosion of terrestrial C4 plants. Sediment from site MRJ03-2, located closer to the mouth of the Mississippi River and at the periphery of the hypoxic zone (annual recurrence of summer-time hypoxia >50%), is similar in composition to core MRJ03-3, but exhibits more isotopic and elemental variability down-core, suggesting that this site is more directly influenced by river discharge. Site MRJ03-5 is located in an area of recurring hypoxia (annual recurrence >75%), and is isotopically and elementally distinct from the other two cores. The carbon and nitrogen isotopic composition of this core prior to 1960 is similar to average particulate organic matter from the lower Mississippi River, and approaches the composition of C3 plants. This site likely receives a greater input of local terrestrial organic matter to the sediment. After 1960 and to the present, a gradual shift to higher values of ??13C and ??15N and lower C:N ratios suggests that algal input to these shelf sediments increased as a result of increased productivity and hypoxia. The values of C:S and ??34S reflect site-specific processes that may be influenced by the higher likelihood of recurring seasonal hypoxia. In particular, the temporal variations in the C:S and ??34S down-core are likely caused by changes in the rate of sulfate reduction, and hence the degree of hypoxia in the overlying water column. Based principally on the down-core C:N and C:S ratios and ??13C and ??34S profiles, sites MRJ03-3 and MRJ03-2 generally reflect more marine organic matter inputs, while site MRJ03-5 appears to be more influenced by terrestrial deposition. ?? 2009 Springer-Verlag.

The value of core lab stress echocardiography interpretations: observations from the ISCHEMIA Trial.

PubMed

Kataoka, Akihisa; Scherrer-Crosbie, Marielle; Senior, Roxy; Gosselin, Gilbert; Phaneuf, Denis; Guzman, Gabriela; Perna, Gian; Lara, Alfonso; Kedev, Sasko; Mortara, Andrea; El-Hajjar, Mohammad; Shaw, Leslee J; Reynolds, Harmony R; Picard, Michael H

2015-12-18

Stress echocardiography (SE) is dependent on subjective interpretations. As a prelude to the International Study of Comparative Health Effectiveness with Medical and Invasive Approaches (ISCHEMIA) Trial, potential sites were required to submit two SE, one with moderate or severe left ventricular (LV) myocardial ischemia and one with mild ischemia. We evaluated the concordance of site and core lab interpretations. Eighty-one SE were submitted from 41 international sites. Ischemia was classified by the number of new or worsening segmental LV wall motion abnormalities (WMA): none, mild (1 or 2) or moderate or severe (3 or more) by the sites and the core lab. Core lab classified 6 SE as no ischemia, 35 mild and 40 moderate or greater. There was agreement between the site and core in 66 of 81 total cases (81%, weighted kappa coefficient [K] =0.635). Agreement was similar for SE type - 24 of 30 exercise (80%, K = 0.571) vs. 41 of 49 pharmacologic (84%, K = 0.685). The agreement between poor or fair image quality (27 of 36 cases, 75%, K = 0.492) was not as good as for the good or excellent image quality cases (39 of 45 cases, 87%, K = 0.755). Differences in concordance were noted for degree of ischemia with the majority of discordant interpretations (87%) occurring in patients with no or mild LV myocardial ischemia. While site SE interpretations are largely concordant with core lab interpretations, this appears dependent on image quality and the extent of WMA. Thus core lab interpretations remain important in clinical trials where consistency of interpretation across a range of cases is critical. ClinicalTrials.gov NCT01471522.

Videoteleconferencing for administration of a multisite obstetrics and gynecology core clerkship.

PubMed

Browne, M W; Hines, J F; Satin, A J; Haffner, W H

2000-03-01

Recent changes and trends in health care delivery have required medical schools to use multiple sites to obtain adequate patient exposure for their students. Decentralization of clinical undergraduate medical education may lead to a lack of continuity in curricula, evaluation, and feedback. We describe the use of interactive videoteleconferencing as a tool to link and improve a multi-site undergraduate core clerkship in obstetrics and gynecology. The Uniformed Services University of the Health Sciences, Bethesda, Maryland, currently utilizes five geographically separate sites for its 6-week core clerkship in obstetrics and gynecology. The site coordinators, clerkship director, and administrative personnel from the parent institution meet approximately 3 weeks after the completion of each core clerkship for live, real-time, and interactive broadcast to complete student evaluations, review curricula, and discuss problems with current students and other pertinent educational issues. Videoteleconferencing provides a mechanism to ensure consistency in curriculum and student evaluations and provides administrative support to distant sites. Furthermore, it enables site coordinators to keep the clerkship director abreast of students and clerkship issues.

Perispeckles are major assembly sites for the exon junction core complex

PubMed Central

Daguenet, Elisabeth; Baguet, Aurélie; Degot, Sébastien; Schmidt, Ute; Alpy, Fabien; Wendling, Corinne; Spiegelhalter, Coralie; Kessler, Pascal; Rio, Marie-Christine; Le Hir, Hervé; Bertrand, Edouard; Tomasetto, Catherine

2012-01-01

The exon junction complex (EJC) is loaded onto mRNAs as a consequence of splicing and regulates multiple posttranscriptional events. MLN51, Magoh, Y14, and eIF4A3 form a highly stable EJC core, but where this tetrameric complex is assembled in the cell remains unclear. Here we show that EJC factors are enriched in domains that we term perispeckles and are visible as doughnuts around nuclear speckles. Fluorescence resonance energy transfer analyses and EJC assembly mutants show that perispeckles do not store free subunits, but instead are enriched for assembled cores. At the ultrastructural level, perispeckles are distinct from interchromatin granule clusters that may function as storage sites for splicing factors and intermingle with perichromatin fibrils, where nascent RNAs and active RNA Pol II are present. These results support a model in which perispeckles are major assembly sites for the tetrameric EJC core. This subnuclear territory thus represents an intermediate region important for mRNA maturation, between transcription sites and splicing factor reservoirs and assembly sites. PMID:22419818

The 1500m South Pole Ice Core: Recovering a 40 Ka Environmental Record

NASA Technical Reports Server (NTRS)

Casey, Kimberly Ann; Neumann, Thomas Allen; Fudge, T. J.; Neumann, T. A.; Steig, E. J.; Cavitte, M. G. P.; Blankenship, D. D.

2014-01-01

Supported by the US National Science Foundation, a new 1500 m, approximately 40 ka old ice core will be recovered from South Pole during the 2014/15 and 2015/16 austral summer seasons using the new US Intermediate Depth Drill. The combination of low temperatures, relatively high accumulation rates and low impurity concentrations at South Pole will yield detailed records of ice chemistry and trace atmospheric gases. The South Pole ice core will provide a climate history record of a unique area of the East Antarctic plateau that is partly influenced by weather systems that cross the West Antarctic ice sheet. The ice at South Pole flows at approximately 10m a(exp-1) and the South Pole ice-core site is a significant distance from an ice divide. Therefore, ice recovered at depth originated progressively farther upstream of the coring site. New ground-penetrating radar collected over the drill site location shows no anthropogenic influence over the past approximately 50 years or upper 15 m. Depth-age scale modeling results show consistent and plausible annual-layer thicknesses and accumulation rate histories, indicating that no significant stratigraphic disturbances exist in the upper 1500m near the ice-core drill site.

Automation in clinical biochemistry: core, peripheral, STAT, and specialist laboratories in Australia.

PubMed

Streitberg, George S; Angel, Lyndall; Sikaris, Kenneth A; Bwititi, Phillip T

2012-10-01

Pathology has developed substantially since the 1990s with the introduction of total laboratory automation (TLA), in response to workloads and the need to improve quality. TLA has enhanced core laboratories, which evolved from discipline-based laboratories. Work practices have changed, with central reception now loading samples onto the Inlet module of the TLA. It is important to continually appraise technology. This study looked at the impact of technology using a self-administered survey to seniors in clinical biochemistry in NATA GX/GY-classified laboratories in Australia. The responses were yes, no, or not applicable and are expressed as percentages of responses. Some of the questions sourced for descriptive answers. Eighty-one laboratories responded, and the locations were 63%, 33%, and 4% in capital cities, regional cities, and country towns, respectively. Forty-two percent were public and 58% private. Clinical biochemistry was in all core laboratories of various sizes, and most performed up to 20 tests per sample. Thirty percent of the 121 surveyed laboratories had plans to install an automated line. Fifty-eight percent had hematology and biochemistry instrumentations in their peripheral laboratory, and 16% had a STAT laboratory on the same site as the core laboratory. There were varied instruments in specialist laboratories, and analyzers with embedded computers were in all laboratories. Medium and large laboratories had workstations with integrated instruments, and some large laboratories had TLA. Technology evolution and rising demand for pathology services make it imperative for laboratories to embrace such changes and reorganize the laboratories to take into account point-of-care testing and the efficiencies of core laboratories and TLA.

Hotspots engineering by grafting Au@Ag core-shell nanoparticles on the Au film over slightly etched nanoparticles substrate for on-site paraquat sensing.

PubMed

Wang, Chaoguang; Wu, Xuezhong; Dong, Peitao; Chen, Jian; Xiao, Rui

2016-12-15

Paraquat (PQ) pollutions are ultra-toxic to human beings and hard to be decomposed in the environment, thus requiring an on-site detection strategy. Herein, we developed a robust and rapid PQ sensing strategy based on the surface-enhanced Raman scattering (SERS) technique. A hybrid SERS substrate was prepared by grafting the Au@Ag core-shell nanoparticles (NPs) on the Au film over slightly etched nanoparticles (Au FOSEN). Hotspots were engineered at the junctions as indicated by the finite difference time domain calculation. SERS performance of the hybrid substrate was explored using p-ATP as the Raman probe. The hybrid substrate gives higher enhancement factor comparing to either the Au FOSEN substrate or the Au@Ag core-shell NPs, and exhibits excellent reproducibility, homogeneity and stability. The proposed SERS substrates were prepared in batches for the practical PQ sensing. The total analysis time for a single sample, including the pre-treatment and measurement, was less than 5min with a PQ detection limit of 10nM. Peak intensities of the SERS signal were plotted as a function of the PQ concentrations to calibrate the sensitivity by fitting the Hill's equation. The plotted calibration curve showed a good log-log linearity with the coefficient of determination of 0.98. The selectivity of the sensing proposal was based on the "finger print" Raman spectra of the analyte. The proposed substrate exhibited good recovery when it applied to real water samples, including lab tap water, bottled water, and commercially obtained apple juice and grape juice. This SERS-based PQ detection method is simple, rapid, sensitive and selective, which shows great potential in pesticide residue and additives abuse monitoring. Copyright © 2016 Elsevier B.V. All rights reserved.

Influence of item distribution pattern and abundance on efficiency of benthic core sampling

USGS Publications Warehouse

Behney, Adam C.; O'Shaughnessy, Ryan; Eichholz, Michael W.; Stafford, Joshua D.

2014-01-01

ore sampling is a commonly used method to estimate benthic item density, but little information exists about factors influencing the accuracy and time-efficiency of this method. We simulated core sampling in a Geographic Information System framework by generating points (benthic items) and polygons (core samplers) to assess how sample size (number of core samples), core sampler size (cm2), distribution of benthic items, and item density affected the bias and precision of estimates of density, the detection probability of items, and the time-costs. When items were distributed randomly versus clumped, bias decreased and precision increased with increasing sample size and increased slightly with increasing core sampler size. Bias and precision were only affected by benthic item density at very low values (500–1,000 items/m2). Detection probability (the probability of capturing ≥ 1 item in a core sample if it is available for sampling) was substantially greater when items were distributed randomly as opposed to clumped. Taking more small diameter core samples was always more time-efficient than taking fewer large diameter samples. We are unable to present a single, optimal sample size, but provide information for researchers and managers to derive optimal sample sizes dependent on their research goals and environmental conditions.

Lightweight Low Force Rotary Percussive Coring Tool for Planetary Applications

NASA Technical Reports Server (NTRS)

Hironaka, Ross; Stanley, Scott

2010-01-01

A prototype low-force rotary-percussive rock coring tool for use in acquiring samples for geological surveys in future planetary missions was developed. The coring tool could eventually enable a lightweight robotic system to operate from a relatively small (less than 200 kg) mobile or fixed platform to acquire and cache Mars or other planetary rock samples for eventual return to Earth for analysis. To gain insight needed to design an integrated coring tool, the coring ability of commercially available coring bits was evaluated for effectiveness of varying key parameters: weight-on-bit, rotation speed, percussive rate and force. Trade studies were performed for different methods of breaking a core at its base and for retaining the core in a sleeve to facilitate sample transfer. This led to a custom coring tool design which incorporated coring, core breakage, core retention, and core extraction functions. The coring tool was tested on several types of rock and demonstrated the overall feasibility of this approach for robotic rock sample acquisition.

Mass Spectrometry on Future Mars Landers

NASA Technical Reports Server (NTRS)

Brinckerhoff, W. B.; Mahaffy, P. R.

2011-01-01

Mass spectrometry investigations on the 2011 Mars Science Laboratory (MSL) and the 2018 ExoMars missions will address core science objectives related to the potential habitability of their landing site environments and more generally the near-surface organic inventory of Mars. The analysis of complex solid samples by mass spectrometry is a well-known approach that can provide a broad and sensitive survey of organic and inorganic compounds as well as supportive data for mineralogical analysis. The science value of such compositional information is maximized when one appreciates the particular opportunities and limitations of in situ analysis with resource-constrained instrumentation in the context of a complete science payload and applied to materials found in a particular environment. The Sample Analysis at Mars (SAM) investigation on MSL and the Mars Organic Molecule Analyzer (MOMA) investigation on ExoMars will thus benefit from and inform broad-based analog field site work linked to the Mars environments where such analysis will occur.

Northern Victoria Land (western Ross Sea-Antarctica): inner shelf fine sedimentation

NASA Astrophysics Data System (ADS)

Colizza, E.; Finocchiaro, F.; Ivaldi, R.; Pittà, A.; Tolotti, R.; Brambati, A.

2003-04-01

The Holocene sedimentation conditions are represented, in the western Ross Sea, by diatomaceous ooze in the uppermost part of sedimentary sequences, while diamicton deposited during Last Glacial Maximum are the basal unit of most cores. Thick layer (> 2 m) of diatomaceous ooze were sampled in the northern Joides Basin and into Granite Harbour. In Drygalski Ice Tongue area and along the coasts of northern Victoria Land, prevails coarse sedimentation, due to seaward flowing of large outlet glacier that drain the Transantarctic Mountain. During 1998-99 and 2001-02 PNRA antarctic cruises, favourable sea ice conditions, has allowed to sample inner shelf area, both in Wood Bay and south of Drygalski ice tongue (Nordenskjold basin). In both sites fine laminated diatomaceous mud are present. Preliminary seismostratigraphy and sedimentological data are here reported. This is the first note of new sites of fine sedimentation in the Ross Sea inner shelf.

Examination of core samples from the Mount Elbert Gas Hydrate Stratigraphic Test Well, Alaska North Slope: Effects of retrieval and preservation

USGS Publications Warehouse

Kneafsey, T.J.; Lu, H.; Winters, W.; Boswell, R.; Hunter, R.; Collett, T.S.

2011-01-01

Collecting and preserving undamaged core samples containing gas hydrates from depth is difficult because of the pressure and temperature changes encountered upon retrieval. Hydrate-bearing core samples were collected at the BPXA-DOE-USGS Mount Elbert Gas Hydrate Stratigraphic Test Well in February 2007. Coring was performed while using a custom oil-based drilling mud, and the cores were retrieved by a wireline. The samples were characterized and subsampled at the surface under ambient winter arctic conditions. Samples thought to be hydrate bearing were preserved either by immersion in liquid nitrogen (LN), or by storage under methane pressure at ambient arctic conditions, and later depressurized and immersed in LN. Eleven core samples from hydrate-bearing zones were scanned using x-ray computed tomography to examine core structure and homogeneity. Features observed include radial fractures, spalling-type fractures, and reduced density near the periphery. These features were induced during sample collection, handling, and preservation. Isotopic analysis of the methane from hydrate in an initially LN-preserved core and a pressure-preserved core indicate that secondary hydrate formation occurred throughout the pressurized core, whereas none occurred in the LN-preserved core, however no hydrate was found near the periphery of the LN-preserved core. To replicate some aspects of the preservation methods, natural and laboratory-made saturated porous media samples were frozen in a variety of ways, with radial fractures observed in some LN-frozen sands, and needle-like ice crystals forming in slowly frozen clay-rich sediments. Suggestions for hydrate-bearing core preservation are presented.

Financial Management of a Large Multi-site Randomized Clinical Trial

PubMed Central

Sheffet, Alice J.; Flaxman, Linda; Tom, MeeLee; Hughes, Susan E.; Longbottom, Mary E.; Howard, Virginia J.; Marler, John R.; Brott, Thomas G.

2014-01-01

Background The Carotid Revascularization Endarterectomy versus Stenting Trial (CREST) received five years’ funding ($21,112,866) from the National Institutes of Health to compare carotid stenting to surgery for stroke prevention in 2,500 randomized participants at 40 sites. Aims Herein we evaluate the change in the CREST budget from a fixed to variable-cost model and recommend strategies for the financial management of large-scale clinical trials. Methods Projections of the original grant’s fixed-cost model were compared to the actual costs of the revised variable-cost model. The original grant’s fixed-cost budget included salaries, fringe benefits, and other direct and indirect costs. For the variable-cost model, the costs were actual payments to the clinical sites and core centers based upon actual trial enrollment. We compared annual direct and indirect costs and per-patient cost for both the fixed and variable models. Differences between clinical site and core center expenditures were also calculated. Results Using a variable-cost budget for clinical sites, funding was extended by no-cost extension from five to eight years. Randomizing sites tripled from 34 to 109. Of the 2,500 targeted sample size, 138 (5.5%) were randomized during the first five years and 1,387 (55.5%) during the no-cost extension. The actual per-patient costs of the variable model were 9% ($13,845) of the projected per-patient costs ($152,992) of the fixed model. Conclusions Performance-based budgets conserve funding, promote compliance, and allow for additional sites at modest additional cost. Costs of large-scale clinical trials can thus be reduced through effective management without compromising scientific integrity. PMID:24661748

Spatial variation in diesel-related elemental and organic PM2.5 components during workweek hours across a downtown core.

PubMed

Tunno, Brett J; Shmool, Jessie L C; Michanowicz, Drew R; Tripathy, Sheila; Chubb, Lauren G; Kinnee, Ellen; Cambal, Leah; Roper, Courtney; Clougherty, Jane E

2016-12-15

Capturing intra-urban variation in diesel-related pollution exposures remains a challenge, given its complex chemical mix, and relatively few well-characterized ambient-air tracers for the multiple diesel sources in densely-populated urban areas. To capture fine-scale spatial resolution (50×50m grid cells) in diesel-related pollution, we used geographic information systems (GIS) to systematically allocate 36 sampling sites across downtown Pittsburgh, PA, USA (2.8km 2 ), cross-stratifying to disentangle source impacts (i.e., truck density, bus route frequency, total traffic density). For buses, outbound and inbound trips per week were summed by route and a kernel density was calculated across sites. Programmable monitors collected fine particulate matter (PM 2.5 ) samples specific to workweek hours (Monday-Friday, 7 am-7 pm), summer and winter 2013. Integrated filters were analyzed for black carbon (BC), elemental carbon (EC), organic carbon (OC), elemental constituents, and diesel-related organic compounds [i.e., polycyclic aromatic hydrocarbons (PAHs), hopanes, steranes]. To our knowledge, no studies have collected this suite of pollutants with such high sampling density, with the ability to capture spatial patterns during specific hours of interest. We hypothesized that we would find substantial spatial variation for each pollutant and significant associations with key sources (e.g. diesel and gasoline vehicles), with higher concentrations near the center of this small downtown core. Using a forward stepwise approach, we developed seasonal land use regression (LUR) models for PM 2.5 , BC, total EC, OC, PAHs, hopanes, steranes, aluminum (Al), calcium (Ca), and iron (Fe). Within this small domain, greater concentration differences were observed in most pollutants across sites, on average, than between seasons. Higher PM 2.5 and BC concentrations were found in the downtown core compared to the boundaries. PAHs, hopanes, and steranes displayed different spatial patterning across the study area by constituent. Most LUR models suggested a strong influence of bus-related emissions on pollution gradients. Buses were more dominant predictors compared to truck and vehicular traffic for several pollutants. Overall, we found substantial variation in diesel-related concentrations in a very small downtown area, which varied across elemental and organic components. Copyright © 2016. Published by Elsevier B.V.

Portable imaging system method and apparatus

DOEpatents

Freifeld, Barry M.; Kneafsley, Timothy J.; Pruess, Jacob; Tomutsa, Liviu; Reiter, Paul A.; deCastro, Ted M.

2006-07-25

An operator shielded X-ray imaging system has sufficiently low mass (less than 300 kg) and is compact enough to enable portability by reducing operator shielding requirements to a minimum shielded volume. The resultant shielded volume may require a relatively small mass of shielding in addition to the already integrally shielded X-ray source, intensifier, and detector. The system is suitable for portable imaging of well cores at remotely located well drilling sites. The system accommodates either small samples, or small cross-sectioned objects of unlimited length. By rotating samples relative to the imaging device, the information required for computer aided tomographic reconstruction may be obtained. By further translating the samples relative to the imaging system, fully three dimensional (3D) tomographic reconstructions may be obtained of samples having arbitrary length.

Defining Lithological Units by Cuttings, Core and Logging Data at Site C0009A in the Nankai Trough, Japan: IODP Expedition 319

NASA Astrophysics Data System (ADS)

Efimenko, N.; Schleicher, A. M.; Buchs, D. M.; Buret, C.; Kawabata, K.; Boutt, D. F.; Underwood, M.; Araki, E.; Byrne, T. B.; McNeill, L. C.; Saffer, D. M.; Eguchi, N. O.; Takahashi, K.; Toczko, S.; Scientists, E.

2009-12-01

The use of cuttings as an alternative or addition to core material is broadly debated in on-shore and off-shore drilling expeditions. Expedition 319 is the first IODP based Nankai Trough Seismogenic Zone Experiment (NanTroSEIZE) project using the riser-drilling method to collect cutting and core samples for scientific studies. One major scientific objective for this site was to characterise the lithology and deformation history of the Kumano forearc basin sediments and its underlying units through comparison of (i) cuttings, (ii) core, (iii) measurements while drilling, and (iv) wireline logging data. Cuttings were retrieved from each 5 m intervals from 703.9 to 1604 m, and cores were recovered from 1509.7 to 1593.9 m below sea floor. As core availability was limited, the study of cuttings was a crucial step in improving our understanding of their potential and limits for lithostratigraphical interpretations compared to core. Mineralogical and chemical analysis of cuttings and core, wireline logging data, and gamma ray data from MWD were available to define four lithostratigraphic units. These units are composed of mud and mudstone with coarser silty and sandy interbeds, and volcanic ash/tuff. Consistency between unit boundaries determined from cuttings and those determined from log data is good in terms of depth, with typical mismatches of less than 10m. Three significant problems affecting the preservation of cuttings were (1) mixing of cuttings as they travel from the drill face to the surface, (2) alteration of natural mineral and structure signatures, and (3) possible contamination from natural clay minerals with the polymer/bentonite drill mud. These difficulties can be overcome in part through the analysis of cuttings of similar sizes (1-4 mm), guided by the analyses of bulk cuttings. A more accurate quantitative characterisation of cuttings through the use of digital imaging might improve the description of lithofacies. Although the quality of cuttings is affected by caving and drilling mud contamination, our results clearly indicate that cuttings retrieval is a viable alternative to coring in ocean drilling. However, to improve the precision of lithostratigraphical observations and interpretations in critical intervals, the study of cores is needed.

Patterns of orchid bee species diversity and turnover among forested plateaus of central Amazonia

PubMed Central

Machado, Carolina de Barros; Galetti, Pedro Manoel; Oliveira, Marcio; Dirzo, Rodolfo; Fernandes, Geraldo Wilson

2017-01-01

The knowledge of spatial pattern and geographic beta-diversity is of great importance for biodiversity conservation and interpreting ecological information. Tropical forests, especially the Amazon Rainforest, are well known for their high species richness and low similarity in species composition between sites, both at local and regional scales. We aimed to determine the effect and relative importance of area, isolation and climate on species richness and turnover in orchid bee assemblages among plateaus in central Brazilian Amazonia. Variance partitioning techniques were applied to assess the relative effects of spatial and environmental variables on bee species richness, phylogeny and composition. We hypothesized that greater abundance and richness of orchid bees would be found on larger plateaus, with a set of core species occurring on all of them. We also hypothesized that smaller plateaus would possess lower phylogenetic diversity. We found 55 bee species distributed along the nine sampling sites (plateaus) with 17 of them being singletons. There was a significant decrease in species richness with decreasing size of plateaus, and a significant decrease in the similarity in species composition with greater distance and climatic variation among sampling sites. Phylogenetic diversity varied among the sampling sites but was directly related to species richness. Although not significantly related to plateau area, smaller or larger PDFaith were observed in the smallest and the largest plateaus, respectively. PMID:28410432

Patterns of orchid bee species diversity and turnover among forested plateaus of central Amazonia.

PubMed

Antonini, Yasmine; Machado, Carolina de Barros; Galetti, Pedro Manoel; Oliveira, Marcio; Dirzo, Rodolfo; Fernandes, Geraldo Wilson

2017-01-01

The knowledge of spatial pattern and geographic beta-diversity is of great importance for biodiversity conservation and interpreting ecological information. Tropical forests, especially the Amazon Rainforest, are well known for their high species richness and low similarity in species composition between sites, both at local and regional scales. We aimed to determine the effect and relative importance of area, isolation and climate on species richness and turnover in orchid bee assemblages among plateaus in central Brazilian Amazonia. Variance partitioning techniques were applied to assess the relative effects of spatial and environmental variables on bee species richness, phylogeny and composition. We hypothesized that greater abundance and richness of orchid bees would be found on larger plateaus, with a set of core species occurring on all of them. We also hypothesized that smaller plateaus would possess lower phylogenetic diversity. We found 55 bee species distributed along the nine sampling sites (plateaus) with 17 of them being singletons. There was a significant decrease in species richness with decreasing size of plateaus, and a significant decrease in the similarity in species composition with greater distance and climatic variation among sampling sites. Phylogenetic diversity varied among the sampling sites but was directly related to species richness. Although not significantly related to plateau area, smaller or larger PDFaith were observed in the smallest and the largest plateaus, respectively.

Near-Surface Profiles of Water Stable Isotope Components and Indicated Transitional History of Ice-Wedge Polygons Near Barrow

NASA Astrophysics Data System (ADS)

Iwahana, G.; Wilson, C.; Newman, B. D.; Heikoop, J. M.; Busey, R.

2017-12-01

Wetlands associated with ice-wedge polygons are commonly distributed across the Arctic Coastal Plain of northern Alaska, a region underlain by continuous permafrost. Micro-topography of the ice-wedge polygons controls local hydrology, and the micro-topography could be altered due to factors such like surface vegetation, wetness, freeze-thaw cycles, and permafrost degradation/aggradation under climate change. Understanding status of the wetlands in the near future is important because it determines biogeochemical cycle, which drives release of greenhouse gases from the ground. However, transitional regime of the ice-wedge polygons under the changing climate is not fully understood. In this study, we analyzed geochemistry of water extracted from frozen soil cores sampled down to about 1m depth in 2014 March at NGEE-Arctic sites in the Barrow Environmental Observatory. The cores were sampled from troughs/rims/centers of five different low-centered or flat-centered polygons. The frozen cores are divided into 5-10cm cores for each location, thawed in sealed plastic bags, and then extracted water was stored in vials. Comparison between the profiles of geochemistry indicated connection of soil water in the active layer at different location in a polygon, while it revealed that distinctly different water has been stored in permafrost layer at troughs/rims/centers of some polygons. Profiles of volumetric water content (VWC) showed clear signals of freeze-up desiccation in the middle of saturated active layers as low VWC anomalies at most sampling points. Water in the active layer and near-surface permafrost was classified into four categories: ice wedge / fresh meteoric / transitional / highly fractionated water. The overall results suggested prolonged separation of water in the active layer at the center of low-centered polygons without lateral connection in water path in the past.

The Chew Bahir Drilling Project (HSPDP). Deciphering climate information from the Chew Bahir sediment cores: Towards a continuous half-million year climate record near the Omo - Turkana key palaeonanthropological Site

NASA Astrophysics Data System (ADS)

Foerster, Verena E.; Asrat, Asfawossen; Chapot, Melissa S.; Cohen, Andrew S.; Dean, Jonathan R.; Deino, Alan; Günter, Christina; Junginger, Annett; Lamb, Henry F.; Leng, Melanie J.; Roberts, Helen M.; Schaebitz, Frank; Trauth, Martin H.

2017-04-01

As a contribution towards an enhanced understanding of human-climate interactions, the Hominin Sites and Paleolakes Drilling Project (HSPDP) has successfully completed coring five dominantly lacustrine archives of climate change during the last 3.5 Ma in East Africa. All five sites in Ethiopia and Kenya are adjacent to key paleoanthropological research areas encompassing diverse milestones in human evolution, dispersal episodes, and technological innovation. The 280 m-long Chew Bahir sediment records, recovered from a tectonically-bound basin in the southern Ethiopian rift in late 2014, cover the past 550 ka of environmental history, a time period that includes the transition to the Middle Stone Age, and the origin and dispersal of modern Homo sapiens. Deciphering climate information from lake sediments is challenging, due to the complex relationship between climate parameters and sediment composition. We will present the first results in our efforts to develop a reliable climate-proxy tool box for Chew Bahir by deconvolving the relationship between sedimentological and geochemical sediment composition and strongly climate-controlled processes in the basin, such as incongruent weathering, transportation and authigenic mineral alteration. Combining our first results from the long cores with those from a pilot study of short cores taken in 2009/10 along a NW-SE transect of the basin, we have developed a hypothesis linking climate forcing and paleoenvironmental signal-formation processes in the basin. X-ray diffraction analysis of the first sample sets from the long Chew Bahir record reveals similar processes that have been recognized for the uppermost 20 m during the pilot-study of the project: the diagenetic illitization of smectites during episodes of higher alkalinity and salinity in the closed-basin lake induced by a drier climate. The precise time resolution, largely continuous record and (eventually) a detailed understanding of site specific proxy formation, will give us a continuous record of environmental history on decadal to orbital timescales. Our data enable us to test current hypotheses of the impact of a variety of climate shifts on human evolution and dispersal.

When core competence is not enough: functional interplay of the DEAD-box helicase core with ancillary domains and auxiliary factors in RNA binding and unwinding.

PubMed

Rudolph, Markus G; Klostermeier, Dagmar

2015-08-01

DEAD-box helicases catalyze RNA duplex unwinding in an ATP-dependent reaction. Members of the DEAD-box helicase family consist of a common helicase core formed by two RecA-like domains. According to the current mechanistic model for DEAD-box mediated RNA unwinding, binding of RNA and ATP triggers a conformational change of the helicase core, and leads to formation of a compact, closed state. In the closed conformation, the two parts of the active site for ATP hydrolysis and of the RNA binding site, residing on the two RecA domains, become aligned. Closing of the helicase core is coupled to a deformation of the RNA backbone and destabilization of the RNA duplex, allowing for dissociation of one of the strands. The second strand remains bound to the helicase core until ATP hydrolysis and product release lead to re-opening of the core. The concomitant disruption of the RNA binding site causes dissociation of the second strand. The activity of the helicase core can be modulated by interaction partners, and by flanking N- and C-terminal domains. A number of C-terminal flanking regions have been implicated in RNA binding: RNA recognition motifs (RRM) typically mediate sequence-specific RNA binding, whereas positively charged, unstructured regions provide binding sites for structured RNA, without sequence-specificity. Interaction partners modulate RNA binding to the core, or bind to RNA regions emanating from the core. The functional interplay of the helicase core and ancillary domains or interaction partners in RNA binding and unwinding is not entirely understood. This review summarizes our current knowledge on RNA binding to the DEAD-box helicase core and the roles of ancillary domains and interaction partners in RNA binding and unwinding by DEAD-box proteins.

Vertical hydraulic conductivity of a clayey-silt aquitard: accelerated fluid flow in a centrifuge permeameter compared with in situ conditions

NASA Astrophysics Data System (ADS)

Timms, W. A.; Crane, R.; Anderson, D. J.; Bouzalakos, S.; Whelan, M.; McGeeney, D.; Rahman, P. F.; Guinea, A.; Acworth, R. I.

2014-03-01

Evaluating the possibility of leakage through low permeability geological strata is critically important for sustainable water supplies, extraction of fuels from strata such as coal beds, and confinement of waste within the earth. Characterizing low or negligible flow rates and transport of solutes can require impractically long periods of field or laboratory testing, but is necessary for evaluations over regional areas and over multi-decadal timescales. The current work reports a custom designed centrifuge permeameter (CP) system, which can provide relatively rapid and reliable hydraulic conductivity (K) measurement compared to column permeameter tests at standard gravity (1g). Linear fluid velocity through a low K porous sample is linearly related to g-level during a CP flight unless consolidation or geochemical reactions occur. The CP module is designed to fit within a standard 2 m diameter, geotechnical centrifuge with a capacity for sample dimensions of 30 to 100 mm diameter and 30 to 200 mm in length. At maximum RPM the resultant centrifugal force is equivalent to 550g at base of sample or a total stress of ~2 MPa. K is calculated by measuring influent and effluent volumes. A custom designed mounting system allows minimal disturbance of drill core samples and a centrifugal force that represents realistic in situ stress conditions is applied. Formation fluids were used as influent to limit any shrink-swell phenomena which may alter the resultant K value. Vertical hydraulic conductivity (Kv) results from CP testing of core from the sites in the same clayey silt formation varied (10-7 to 10-9 m s-1, n = 14) but higher than 1g column permeameter tests of adjacent core using deionized water (10-9 to 10-11 m s-1, n = 7). Results at one site were similar to in situ Kv values (3 × 10-9 m s-1) from pore pressure responses within a 30 m clayey sequence in a homogenous area of the formation. Kv sensitivity to sample heterogeneity was observed, and anomalous flow via preferential pathways could be readily identified. Results demonstrate the utility of centrifuge testing for measuring minimum K values that can contribute to assessments of geological formations at large scale. The importance of using realistic stress conditions and influent geochemistry during hydraulic testing is also demonstrated.

Spatial and temporal trends in poly- and per-fluorinated compounds in the Laurentian Great Lakes Erie, Ontario and St. Clair.

PubMed

Codling, Garry; Sturchio, Neil C; Rockne, Karl J; Li, An; Peng, H; Tse, Timothy J; Jones, Paul D; Giesy, John P

2018-06-01

The temporal and spatial trends in sediment of 22 poly- and perfluorinated (PFAS) compounds were investigated in the southern Great Lakes Erie and Ontario as well as Lake St. Clair. Surface concentrations measured by Ponar grab samples indicated a trend for greater concentrations near to urban sites. Mean concentrations ∑ 22 PFAS were 15.6, 18.2 and 19 ng g -1 dm for Lakes St. Clair, Erie and Ontario, respectively. Perfluoro-n-butanoic acid (PFBA) and Perfluoro-n-hexanoic acid (PFHxA) were frequently determined in surface sediment and upper core samples indicating a shift in use patterns. Where PFBA was identified it was at relatively great concentrations typically >10 ng g -1 dm. However as PFBA and PFHxA are less likely to bind to sediment they may be indicative of pore water concentrations Sedimentation rates between Lake Erie and Lake Ontario differ greatly with greater rates observed in Lake Erie. In Lake Ontario, in general concentrations of PFAS observed in core samples closely follow the increase in use along with an observable change due to regulation implementation in the 1970s for water protection. However some of the more water soluble PFAS were observed in deeper core layers than the time of production could account for, indicating potential diffusion within the sediment. Given the greater sedimentation rates in Lake Erie, it was hoped to observe in greater resolution changes since the mid-1990s. However, though some decrease was observed at some locations the results are not clear. Many cores in Lake Erie had clearly observable gas voids, indicative of gas ebullition activity due to biogenic production, there were also observable mussel beds that could indicate mixing by bioturbation of core layers. Copyright © 2018 Elsevier Ltd. All rights reserved.

Sorption testing and generalized composite surface complexation models for determining uranium sorption parameters at a proposed in-situ recovery site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Raymond H.; Truax, Ryan A.; Lankford, David A.

Solid-phase iron concentrations and generalized composite surface complexation models were used to evaluate procedures in determining uranium sorption on oxidized aquifer material at a proposed U in situ recovery (ISR) site. At the proposed Dewey Burdock ISR site in South Dakota, USA, oxidized aquifer material occurs downgradient of the U ore zones. Solid-phase Fe concentrations did not explain our batch sorption test results,though total extracted Fe appeared to be positively correlated with overall measured U sorption. Batch sorption test results were used to develop generalized composite surface complexation models that incorporated the full genericsorption potential of each sample, without detailedmore » mineralogiccharacterization. The resultant models provide U sorption parameters (site densities and equilibrium constants) for reactive transport modeling. The generalized composite surface complexation sorption models were calibrated to batch sorption data from three oxidized core samples using inverse modeling, and gave larger sorption parameters than just U sorption on the measured solidphase Fe. These larger sorption parameters can significantly influence reactive transport modeling, potentially increasing U attenuation. Because of the limited number of calibration points, inverse modeling required the reduction of estimated parameters by fixing two parameters. The best-fit models used fixed values for equilibrium constants, with the sorption site densities being estimated by the inversion process. While these inverse routines did provide best-fit sorption parameters, local minima and correlated parameters might require further evaluation. Despite our limited number of proxy samples, the procedures presented provide a valuable methodology to consider for sites where metal sorption parameters are required. Furthermore, these sorption parameters can be used in reactive transport modeling to assess downgradient metal attenuation, especially when no other calibration data are available, such as at proposed U ISR sites.« less

Sorption testing and generalized composite surface complexation models for determining uranium sorption parameters at a proposed in-situ recovery site

DOE PAGES

Johnson, Raymond H.; Truax, Ryan A.; Lankford, David A.; ...

2016-02-03

Solid-phase iron concentrations and generalized composite surface complexation models were used to evaluate procedures in determining uranium sorption on oxidized aquifer material at a proposed U in situ recovery (ISR) site. At the proposed Dewey Burdock ISR site in South Dakota, USA, oxidized aquifer material occurs downgradient of the U ore zones. Solid-phase Fe concentrations did not explain our batch sorption test results,though total extracted Fe appeared to be positively correlated with overall measured U sorption. Batch sorption test results were used to develop generalized composite surface complexation models that incorporated the full genericsorption potential of each sample, without detailedmore » mineralogiccharacterization. The resultant models provide U sorption parameters (site densities and equilibrium constants) for reactive transport modeling. The generalized composite surface complexation sorption models were calibrated to batch sorption data from three oxidized core samples using inverse modeling, and gave larger sorption parameters than just U sorption on the measured solidphase Fe. These larger sorption parameters can significantly influence reactive transport modeling, potentially increasing U attenuation. Because of the limited number of calibration points, inverse modeling required the reduction of estimated parameters by fixing two parameters. The best-fit models used fixed values for equilibrium constants, with the sorption site densities being estimated by the inversion process. While these inverse routines did provide best-fit sorption parameters, local minima and correlated parameters might require further evaluation. Despite our limited number of proxy samples, the procedures presented provide a valuable methodology to consider for sites where metal sorption parameters are required. Furthermore, these sorption parameters can be used in reactive transport modeling to assess downgradient metal attenuation, especially when no other calibration data are available, such as at proposed U ISR sites.« less

Paleosecular Variation of Plio-Pleistocene Lavas from the Loiyangalani Region of Kenya

NASA Astrophysics Data System (ADS)

Opdyke, N. D.; Kent, D. V.; Huang, K.; Foster, D.; Patel, J.

2008-12-01

The data reported here is part of a study of Pliocene-Pleistocene lavas in Kenya to document the paleosecular variation and time-averaged geomagnetic field direction near to the Equator. We sampled 32 sites (10 oriented cores each) in lavas to the south and the northeast of Loiyangalani that are mapped and dated as Plio-Pleistocene in age (less than ~5 Ma) and associated with Mt. Kulal and the Longipi eruption centers. The samples from this collection were returned to the US, sliced into samples and progressively demagnetized using alternating field demagnetization. The Loiyangalani sites yielded excellent results and are seemingly unaffected by lightning, which seems to be infrequent at this latitude, in this arid environment; all but one site gave acceptable data with an alpha95 of 10° or less. There are 17 reverse sites (Dec = 183.4°, Inc = 0.9°, alpha95 = 6.7°) and 15 normal sites (Dec = 358.4°, Inc = -1.2°, alpha95 = 4.7°). The reversal test is positive suggesting that the normal and reverse polarity populations both represent a reasonable time average. The site means were combined yielding an overall mean direction of Dec = 1.1°, Inc = -1.1°, alpha95 = 4.1°. The inclination is shallower than expected for a geocentric axial dipole field (delta I = -6°); accordingly, the site VGPs give a mean pole position at Lon = 205.1° E, Lat = 86.8° N, Alpha95 = 3°, which is significantly far-sided with respect to the geographic axis. The angular standard deviation of the VGPs is 9.3°, which is a relatively low angular dispersion compared to most PSVL models such as Model G.

Variability of sea salts in ice and firn cores from Fimbul Ice Shelf, Dronning Maud Land, Antarctica

NASA Astrophysics Data System (ADS)

Paulina Vega, Carmen; Isaksson, Elisabeth; Schlosser, Elisabeth; Divine, Dmitry; Martma, Tõnu; Mulvaney, Robert; Eichler, Anja; Schwikowski-Gigar, Margit

2018-05-01

Major ions were analysed in firn and ice cores located at Fimbul Ice Shelf (FIS), Dronning Maud Land - DML, Antarctica. FIS is the largest ice shelf in the Haakon VII Sea, with an extent of approximately 36 500 km2. Three shallow firn cores (about 20 m deep) were retrieved in different ice rises, Kupol Ciolkovskogo (KC), Kupol Moskovskij (KM), and Blåskimen Island (BI), while a 100 m long core (S100) was drilled near the FIS edge. These sites are distributed over the entire FIS area so that they provide a variety of elevation (50-400 m a.s.l.) and distance (3-42 km) to the sea. Sea-salt species (mainly Na+ and Cl-) generally dominate the precipitation chemistry in the study region. We associate a significant sixfold increase in median sea-salt concentrations, observed in the S100 core after the 1950s, to an enhanced exposure of the S100 site to primary sea-salt aerosol due to a shorter distance from the S100 site to the ice front, and to enhanced sea-salt aerosol production from blowing salty snow over sea ice, most likely related to the calving of Trolltunga occurred during the 1960s. This increase in sea-salt concentrations is synchronous with a shift in non-sea-salt sulfate (nssSO42-) toward negative values, suggesting a possible contribution of fractionated aerosol to the sea-salt load in the S100 core most likely originating from salty snow found on sea ice. In contrast, there is no evidence of a significant contribution of fractionated sea salt to the ice-rises sites, where the signal would be most likely masked by the large inputs of biogenic sulfate estimated for these sites. In summary, these results suggest that the S100 core contains a sea-salt record dominated by the proximity of the site to the ocean, and processes of sea ice formation in the neighbouring waters. In contrast, the ice-rises firn cores register a larger-scale signal of atmospheric flow conditions and a less efficient transport of sea-salt aerosols to these sites. These findings are a contribution to the understanding of the mechanisms behind sea-salt aerosol production, transport and deposition at coastal Antarctic sites, and the improvement of the current Antarctic sea ice reconstructions based on sea-salt chemical proxies obtained from ice cores.

Transmission electron microscopy and ab initio calculations to relate interfacial intermixing and the magnetism of core/shell nanoparticles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chi, C.-C.; Hsiao, C.-H.; Ouyang, Chuenhou, E-mail: houyang@mx.nthu.edu.tw

2015-05-07

Significant efforts towards understanding bi-magnetic core-shell nanoparticles are underway currently as they provide a pathway towards properties unavailable with single-phased systems. Recently, we have demonstrated that the magnetism of γ-Fe2O3/CoO core-shell nanoparticles, in particular, at high temperatures, originates essentially from an interfacial doped iron-oxide layer that is formed by the migration of Co{sup 2+} from the CoO shell into the surface layers of the γ-Fe2O3 core [Skoropata et al., Phys. Rev. B 89, 024410 (2014)]. To examine directly the nature of the intermixed layer, we have used high-resolution transmission electron microscopy (HRTEM) and first-principles calculations to examine the impact ofmore » the core-shell intermixing at the atomic level. By analyzing the HRTEM images and energy dispersive spectra, the level and nature of intermixing was confirmed, mainly as doping of Co into the octahedral site vacancies of γ-Fe2O3. The average Co doping depths for different processing temperatures (150 °C and 235 °C) were 0.56 nm and 0.78 nm (determined to within 5% through simulation), respectively, establishing that the amount of core-shell intermixing can be altered purposefully with an appropriate change in synthesis conditions. Through first-principles calculations, we find that the intermixing phase of γ-Fe2O3 with Co doping is ferromagnetic, with even higher magnetization as compared to that of pure γ-Fe2O3. In addition, we show that Co doping into different octahedral sites can cause different magnetizations. This was reflected in a change in overall nanoparticle magnetization, where we observed a 25% reduction in magnetization for the 235 °C versus the 150 °C sample, despite a thicker intermixed layer.« less

Geomagnetic Intensity Record from the 1.43 Ga Laramie Anorthosite Complex

NASA Astrophysics Data System (ADS)

Gee, J. S.; Selkin, P. A.; Meurer, W. P.

2015-12-01

Models of core and mantle evolution with a basal magma ocean suggest that vigorous convection in the outer core may have begun in the Proterozoic, but that inner core crystallization did not drive the geodynamo until ~0.5 Ga. Published paleointensity data suggest that Earth's magnetic field may have been relatively weak during the Proterozoic due to geodynamo activity generated by superadiabatic cooling of the fluid core. The Laramie Anorthosite Complex (LAC; Wyoming, USA) crystallized at 1.43 Ga, during the hypothesized Proterozoic weak-field interval. The LAC consists of several genetically related plutons, including (from oldest to youngest) the Poe Mountain and Snow Creek Anorthosites, and the Sybille Monzosyenite. Anorthositic, leucogabbroic, and monzosyenitic rocks from these units formed under a range of fO2 and contain different magnetic carriers, but likely retain a thermoremanent magnetization from at or close to their crystallization age. Initial IZZI Thellier experiments were conducted on oriented cores from 22 sites. Additional paleointensity analyses utilized smaller chips, selected for high Königsberger ratios to minimize the influence of larger discrete magnetic grains. Over 60% of these high Q specimens yielded reliable results, using strict criteria (FRAC > 0.80; beta < 0.1) in the ThellierGUI program. Ten site mean paleofield estimates from the Poe Mountain Anorthosite range from 40 to 70 μT (7.8 - 13.7 x 1022 Am2) while the Snow Creek Anorthosite has lower values (~20 μT). These values have been corrected for remanence anisotropy, which is significant for core samples (median τ1/τ3 = 1.46) and extreme for some chips (τ1 values exceeding 0.95) from the Snow Creek Anorthosite. A proposed slow cooling rate of the LAC would cause our paleointensity values to overestimate the ancient field by as much as 50%. Nonetheless, the range of intensity values recorded in the LAC is similar to that in the Phanerozoic and does not appear compatible with the proposed weak Proterozoic field.

Composition, Alteration, and Texture of Fault-Related Rocks from Safod Core and Surface Outcrop Analogs: Evidence for Deformation Processes and Fluid-Rock Interactions

NASA Astrophysics Data System (ADS)

Bradbury, Kelly K.; Davis, Colter R.; Shervais, John W.; Janecke, Susanne U.; Evans, James P.

2015-05-01

We examine the fine-scale variations in mineralogical composition, geochemical alteration, and texture of the fault-related rocks from the Phase 3 whole-rock core sampled between 3,187.4 and 3,301.4 m measured depth within the San Andreas Fault Observatory at Depth (SAFOD) borehole near Parkfield, California. This work provides insight into the physical and chemical properties, structural architecture, and fluid-rock interactions associated with the actively deforming traces of the San Andreas Fault zone at depth. Exhumed outcrops within the SAF system comprised of serpentinite-bearing protolith are examined for comparison at San Simeon, Goat Rock State Park, and Nelson Creek, California. In the Phase 3 SAFOD drillcore samples, the fault-related rocks consist of multiple juxtaposed lenses of sheared, foliated siltstone and shale with block-in-matrix fabric, black cataclasite to ultracataclasite, and sheared serpentinite-bearing, finely foliated fault gouge. Meters-wide zones of sheared rock and fault gouge correlate to the sites of active borehole casing deformation and are characterized by scaly clay fabric with multiple discrete slip surfaces or anastomosing shear zones that surround conglobulated or rounded clasts of compacted clay and/or serpentinite. The fine gouge matrix is composed of Mg-rich clays and serpentine minerals (saponite ± palygorskite, and lizardite ± chrysotile). Whole-rock geochemistry data show increases in Fe-, Mg-, Ni-, and Cr-oxides and hydroxides, Fe-sulfides, and C-rich material, with a total organic content of >1 % locally in the fault-related rocks. The faults sampled in the field are composed of meters-thick zones of cohesive to non-cohesive, serpentinite-bearing foliated clay gouge and black fine-grained fault rock derived from sheared Franciscan Formation or serpentinized Coast Range Ophiolite. X-ray diffraction of outcrop samples shows that the foliated clay gouge is composed primarily of saponite and serpentinite, with localized increases in Ni- and Cr-oxides and C-rich material over several meters. Mesoscopic and microscopic textures and deformation mechanisms interpreted from the outcrop sites are remarkably similar to those observed in the SAFOD core. Micro-scale to meso-scale fabrics observed in the SAFOD core exhibit textural characteristics that are common in deformed serpentinites and are often attributed to aseismic deformation with episodic seismic slip. The mineralogy and whole-rock geochemistry results indicate that the fault zone experienced transient fluid-rock interactions with fluids of varying chemical composition, including evidence for highly reducing, hydrocarbon-bearing fluids.

Continuous profiles of microstructure, stable water isotopes and impurity content of the 2m snow pack from three polar drill sites

NASA Astrophysics Data System (ADS)

Freitag, Johannes; Schaller, Christoph; Kipfstuhl, Sepp; Hörhold, Maria; Schaidt, Maximilian; Sander, Merle; Moser, Dorothea

2017-04-01

Interpreting polar ice as climate archive requires profound knowledge about the formation of climate-proxies within the upper snow column. In order to investigate different impact factors on signal formation we performed a multiproxy- approach for 2m deep snow profiles by continuously measuring the 3D-microstructure using core-scale X-CT and the isotopic composition and impurity load in discrete samples of 1.1cm spatial resolution. The study includes profiles from a low-accumulation site on the East Antarctic plateau (Kohnen Station, DML), a typical medium-accumulation site on the North-East-Greenland ice sheet (EGRIP drilling camp) and a high-accumulation site on the Renland ice cap (East-coast of Greenland, RECAP drilling camp). Major observations are the tooth-shaped imprint of structural anisotropy and sulfate concentrations at the low accumulation site, the clear isotopic inter-annual variations that are in line with distinct impurity peaks at the high-accumulation site and the unexpected missing footprint of ice crusts and refrozen melt layers within the impurity- and isotope records for all sites.

Data on subsurface storage of liquid waste near Pensacola, Florida, 1963-1980

USGS Publications Warehouse

Hull, R.W.; Martin, J.B.

1982-01-01

Since 1963, when industrial waste was first injected into the subsurface in northwest Florida, considerable data have been collected relating to the geochemistry of subsurface waste storage. This report presents hydrogeologic data on two subsurface waste storage. This report presents hydrogeologic data on two subsurface storage systems near Pensacola, Fla., which inject liquid industrial waste through deep wells into a saline aquifer. Injection sites are described giving a history of well construction, injection, and testing; geologic data from cores and grab samples; hydrographs of injection rates, volume, pressure, and water levels; and chemical and physical data from water-quality samples collected from injection and monitor wells. (USGS)

Pleistocene calcareous nannofossil biochronology at IODP Site U1385 (Expedition 339)

NASA Astrophysics Data System (ADS)

Balestra, B.; Flores, J.-A.; Hodell, D. A.; Hernández-Molina, F. J.; Stow, D. A. V.

2015-12-01

During Integrated Ocean Drilling Program (IODP) Expedition 339, Site U1385 (37°34‧N, 10°7‧W, 2578 m below sea level) was drilled in the lower slope of the Portuguese margin, to provide a marine reference section of Pleistocene millennial-scale climate variability. Five holes were cored using the Advanced Piston Corer (APC) to a depth of ~ 151 m below sea floor (mbsf) recovering a continuous stratigraphic record covering the past 1.4 Ma. Here we present results of the succession of standard and unconventional calcareous nannofossil biostratigraphic events. The quantitative study of calcareous nannofossils showed well-preserved and abundant assemblages throughout the core. Most conventional Pleistocene events were recognized and the timing of bioevents were calibrated using correlation to the new oxygen isotope stratigraphy record developed for the Site U1385. The analyses provide further data on the stratigraphic distribution of selected species and genera, such as the large Emiliania huxleyi (> 4 μm), Gephyrocapsa caribbeanica, Helicosphaera inversa, Gephyrocapsa omega and Reticulofenestra asanoi (> 6 μm) and other circular-subcircular small reticulofenestrids, resulting in new insights into the environmental control of their stratigraphic patterns. Finally, the comparison between nannofossil datums and oxygen isotope stratigraphy on the same samples has resulted in an accurate revision of timing of the events, providing valuable biochronologic information.

The Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X-ray Free-Electron Laser Using a Room-Temperature Sample Delivery Method for Serial Crystallography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mathews, Irimpan I.; Allison, Kim; Robbins, Thomas

The crystal structure of the trans-acyltransferase (AT) from the disorazole polyketide synthase (PKS) was determined at room temperature to a resolution of 2.5 Å using a new method for sample delivery directly into an X-ray free-electron laser. A novel sample extractor efficiently delivered limited quantities of microcrystals directly from the native crystallization solution into the X-ray beam at room temperature. The AT structure revealed important catalytic features of this core PKS enzyme, including the occurrence of conformational changes around the active site. The implications of these conformational changes on polyketide synthase reaction dynamics are discussed.

The Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X-ray Free-Electron Laser Using a Room-Temperature Sample Delivery Method for Serial Crystallography

DOE PAGES

Mathews, Irimpan I.; Allison, Kim; Robbins, Thomas; ...

2017-08-23

The crystal structure of the trans-acyltransferase (AT) from the disorazole polyketide synthase (PKS) was determined at room temperature to a resolution of 2.5 Å using a new method for sample delivery directly into an X-ray free-electron laser. A novel sample extractor efficiently delivered limited quantities of microcrystals directly from the native crystallization solution into the X-ray beam at room temperature. The AT structure revealed important catalytic features of this core PKS enzyme, including the occurrence of conformational changes around the active site. The implications of these conformational changes on polyketide synthase reaction dynamics are discussed.

Characterization of gas hydrate reservoirs by integration of core and log data in the Ulleung Basin, East Sea

USGS Publications Warehouse

Bahk, J.-J.; Kim, G.-Y.; Chun, J.-H.; Kim, J.-H.; Lee, J.Y.; Ryu, B.-J.; Lee, J.-H.; Son, B.-K.; Collett, Timothy S.

2013-01-01

Examinations of core and well-log data from the Second Ulleung Basin Gas Hydrate Drilling Expedition (UBGH2) drill sites suggest that Sites UBGH2-2_2 and UBGH2-6 have relatively good gas hydrate reservoir quality in terms of individual and total cumulative thicknesses of gas-hydrate-bearing sand (HYBS) beds. In both of the sites, core sediments are generally dominated by hemipelagic muds which are intercalated with turbidite sands. The turbidite sands are usually thin-to-medium bedded and mainly consist of well sorted coarse silt to fine sand. Anomalies in infrared core temperatures and porewater chlorinity data and pressure core measurements indicate that “gas hydrate occurrence zones” (GHOZ) are present about 68–155 mbsf at Site UBGH2-2_2 and 110–155 mbsf at Site UBGH2-6. In both the GHOZ, gas hydrates are preferentially associated with many of the turbidite sands as “pore-filling” type hydrates. The HYBS identified in the cores from Site UBGH2-6 are medium-to-thick bedded particularly in the lower part of the GHOZ and well coincident with significant high excursions in all of the resistivity, density, and velocity logs. Gas-hydrate saturations in the HYBS range from 12% to 79% with an average of 52% based on pore-water chlorinity. In contrast, the HYBS from Site UBGH2-2_2 are usually thin-bedded and show poor correlations with both of the resistivity and velocity logs owing to volume averaging effects of the logging tools on the thin HYBS beds. Gas-hydrate saturations in the HYBS range from 15% to 65% with an average of 37% based on pore-water chlorinity. In both of the sites, large fluctuations in biogenic opal contents have significant effects on the sediment physical properties, resulting in limited usage of gamma ray and density logs in discriminating sand reservoirs.

A Highly Conserved Bacterial D-Serine Uptake System Links Host Metabolism and Virulence

PubMed Central

Connolly, James P. R.; Gabrielsen, Mads; Goldstone, Robert J.; Grinter, Rhys; Wang, Dai; Cogdell, Richard J.; Walker, Daniel; Smith, David G. E.; Roe, Andrew J.

2016-01-01

The ability of any organism to sense and respond to challenges presented in the environment is critically important for promoting or restricting colonization of specific sites. Recent work has demonstrated that the host metabolite D-serine has the ability to markedly influence the outcome of infection by repressing the type III secretion system of enterohaemorrhagic Escherichia coli (EHEC) in a concentration-dependent manner. However, exactly how EHEC monitors environmental D-serine is not understood. In this work, we have identified two highly conserved members of the E. coli core genome, encoding an inner membrane transporter and a transcriptional regulator, which collectively help to “sense” levels of D-serine by regulating its uptake from the environment and in turn influencing global gene expression. Both proteins are required for full expression of the type III secretion system and diversely regulated prophage-encoded effector proteins demonstrating an important infection-relevant adaptation of the core genome. We propose that this system acts as a key safety net, sampling the environment for this metabolite, thereby promoting colonization of EHEC to favorable sites within the host. PMID:26727373

Coeval Ar-40/Ar-39 ages of 65.0 million years ago from Chicxulub crater melt rock and Cretaceous-Tertiary boundary tektites

NASA Technical Reports Server (NTRS)

Swisher, Carl C., III; Grajales-Nishimura, Jose M.; Montanari, Alessandro; Margolis, Stanley V.; Claeys, Philippe; Alvarez, Walter; Renne, Paul; Cedillo-Pardo, Esteban; Maurrasse, Florentin J.-M. R.; Curtis, Garniss H.

1992-01-01

Ar-40/Ar-39 dating of drill-core samples of a glassy melt rock recovered from beneath a massive impact breccia contained with the 180-kilometer subsurface Chicxulub crater yields well-behaved incremental heating spectra with a mean plateau age of 64.98 +/- 0.05 million years ago (Ma). The glassy melt rock of andesitic composition was obtained from core 9 (1390 to 1393 meters) in the Chicxulub 1 well. The age of the melt rock is virtually indistinguishable from Ar-40/Ar-39 ages obtained on tektite glass from Beloc, Haiti, and Arroyo el Mimbral, northeastern Mexico, of 65.01 +/- 0.08 Ma (mean plateau age for Beloc) and 65.07 +/- 0.10 Ma (mean total fusion age for both sites). The Ar-40/Ar-39 ages, in conjunction with geochemical and petrological similarities, strengthen the suggestion that the Chicxulub structure is the source for the Haitian and Mexican tektites and is a viable candidate for the Cretaceous-Tertiary boundary impact site.

Opportunities and Challenges of Linking Scientific Core Samples to the Geoscience Data Ecosystem

NASA Astrophysics Data System (ADS)

Noren, A. J.

2016-12-01

Core samples generated in scientific drilling and coring are critical for the advancement of the Earth Sciences. The scientific themes enabled by analysis of these samples are diverse, and include plate tectonics, ocean circulation, Earth-life system interactions (paleoclimate, paleobiology, paleoanthropology), Critical Zone processes, geothermal systems, deep biosphere, and many others, and substantial resources are invested in their collection and analysis. Linking core samples to researchers, datasets, publications, and funding agencies through registration of globally unique identifiers such as International Geo Sample Numbers (IGSNs) offers great potential for advancing several frontiers. These include maximizing sample discoverability, access, reuse, and return on investment; a means for credit to researchers; and documentation of project outputs to funding agencies. Thousands of kilometers of core samples and billions of derivative subsamples have been generated through thousands of investigators' projects, yet the vast majority of these samples are curated at only a small number of facilities. These numbers, combined with the substantial similarity in sample types, make core samples a compelling target for IGSN implementation. However, differences between core sample communities and other geoscience disciplines continue to create barriers to implementation. Core samples involve parent-child relationships spanning 8 or more generations, an exponential increase in sample numbers between levels in the hierarchy, concepts related to depth/position in the sample, requirements for associating data derived from core scanning and lithologic description with data derived from subsample analysis, and publications based on tens of thousands of co-registered scan data points and thousands of analyses of subsamples. These characteristics require specialized resources for accurate and consistent assignment of IGSNs, and a community of practice to establish norms, workflows, and infrastructure to support implementation.

15N CSA tensors and 15N-1H dipolar couplings of protein hydrophobic core residues investigated by static solid-state NMR

NASA Astrophysics Data System (ADS)

Vugmeyster, Liliya; Ostrovsky, Dmitry; Fu, Riqiang

2015-10-01

In this work, we assess the usefulness of static 15N NMR techniques for the determination of the 15N chemical shift anisotropy (CSA) tensor parameters and 15N-1H dipolar splittings in powder protein samples. By using five single labeled samples of the villin headpiece subdomain protein in a hydrated lyophilized powder state, we determine the backbone 15N CSA tensors at two temperatures, 22 and -35 °C, in order to get a snapshot of the variability across the residues and as a function of temperature. All sites probed belonged to the hydrophobic core and most of them were part of α-helical regions. The values of the anisotropy (which include the effect of the dynamics) varied between 130 and 156 ppm at 22 °C, while the values of the asymmetry were in the 0.32-0.082 range. The Leu-75 and Leu-61 backbone sites exhibited high mobility based on the values of their temperature-dependent anisotropy parameters. Under the assumption that most differences stem from dynamics, we obtained the values of the motional order parameters for the 15N backbone sites. While a simple one-dimensional line shape experiment was used for the determination of the 15N CSA parameters, a more advanced approach based on the ;magic sandwich; SAMMY pulse sequence (Nevzorov and Opella, 2003) was employed for the determination of the 15N-1H dipolar patterns, which yielded estimates of the dipolar couplings. Accordingly, the motional order parameters for the dipolar interaction were obtained. It was found that the order parameters from the CSA and dipolar measurements are highly correlated, validating that the variability between the residues is governed by the differences in dynamics. The values of the parameters obtained in this work can serve as reference values for developing more advanced magic-angle spinning recoupling techniques for multiple labeled samples.

An Ecometric Study of Recent Microfossils using High-throughput Imaging

NASA Astrophysics Data System (ADS)

Elder, L. E.; Hull, P. M.; Hsiang, A. Y.; Kahanamoku, S.

2016-02-01

The era of Big Data has ushered in the potential to collect population level information in a manageable time frame. Taxon-free morphological trait analysis, referred to as ecometrics, can be used to examine and compare ecological dynamics between communities with entirely different species compositions. Until recently population level studies of morphology were difficult because of the time intensive task of collecting measurements. To overcome this, we implemented advances in imaging technology and created software to automate measurements. This high-throughput set of methods collects assemblage-scale data, with methods tuned to foraminiferal samples (e.g., light objects on a dark background). Methods include serial focused dark-field microscopy, custom software (Automorph) to batch process images, extract 2D and 3D shape parameters and frames, and implement landmark-free geometric morphometric analyses. Informatics pipelines were created to store, catalog and share images through the Yale Peabody Museum(YPM; peabody.yale.edu). We openly share software and images to enhance future data discovery. In less than a year we have generated over 25TB of high resolution semi 3D images for this initial study. Here, we take the first step towards developing ecometric approaches for open ocean microfossil communities with a calibration study of community shape in recent sediments. We will present an overview of the `shape' of modern planktonic foraminiferal communities from 25 Atlantic core top samples (23 sites in the North and Equatorial Atlantic; 2 sites in the South Atlantic). In total, more than 100,000 microfossils and fragments were imaged from these sites' sediment cores, an unprecedented morphometric sample set. Correlates of community shape, including diversity, temperature, and latitude, will be discussed. These methods have also been applied to images of limpets and fish teeth to date, and have the potential to be used on modern taxa to extract meaningful information on community responses to changing climate.

Paleohydrological Information from Profiles in Pore Water of Holocene Low-Permeability Cores and Groundwater Flow Simulation, Lake Kasumigaura, Japan

NASA Astrophysics Data System (ADS)

Takamoto, N.; Shimada, J.

2014-12-01

The paleohydrological information can become important to predict hydrological conditions in the future. In Japan, which hydrologically is characterized by relatively small catchment scales with steep relief of topography under humid temperate climatic conditions, the residence time of the groundwater should be relatively short. Thus the paleohydrological information preserved in the groundwater aquifer should also be limited compared with the continental aquifer. However, regarding groundwater in clay and silt sediments have low-permeability characteristic, archiving the paleohydrologic information at the time of deposition is expected. 　Therefore, in this study, cores were drilled into Holocene clay and silt deposits (Site K-1 and Site K-2) in the Lake Kasumigaurain Japan, where the depositional rate 10,000 years ago was rapid and it has been affected strongly by sea level changes including transgression and regression. By using the obtained core samples and extracted pore water from the cores, paleohydrologic information was investigated, and it was tried to understand hydrologic environments at the study area during a Holocene. In addition, groundwater flow and solute transport simulation were conducted to reproduce profiles of pore water. 　Results of investigation show that the profiles of pore water contents reflect sea level change and the difference in hydrological environment at that time at each site. The content of the paleo-brackish water in the culmination of transgression was about 14,000 mg/l in Cl-, -13.0‰ in δD and -2.6‰ in δ18O. It is allowed better understanding paleohydrological information by studying not only inorganic chemistry contents and stable isotopes of pore water and also the diatom fossils and groundwater flow and solute transport simulation. We will characterize the paleohydrological information of the study area acquired by those investigations and analysis.

Mars Technology Rover with Arm-Mounted Percussive Coring Tool, Microimager, and Sample-Handling Encapsulation Containerization Subsystem

NASA Technical Reports Server (NTRS)

Younse, Paulo J.; Dicicco, Matthew A.; Morgan, Albert R.

2012-01-01

A report describes the PLuto (programmable logic) Mars Technology Rover, a mid-sized FIDO (field integrated design and operations) class rover with six fully drivable and steerable cleated wheels, a rocker-bogey suspension, a pan-tilt mast with panorama and navigation stereo camera pairs, forward and rear stereo hazcam pairs, internal avionics with motor drivers and CPU, and a 5-degrees-of-freedom robotic arm. The technology rover was integrated with an arm-mounted percussive coring tool, microimager, and sample handling encapsulation containerization subsystem (SHEC). The turret of the arm contains a percussive coring drill and microimager. The SHEC sample caching system mounted to the rover body contains coring bits, sample tubes, and sample plugs. The coring activities performed in the field provide valuable data on drilling conditions for NASA tasks developing and studying coring technology. Caching of samples using the SHEC system provide insight to NASA tasks investigating techniques to store core samples in the future.

Paleoclimate record from Zidita Cave (Romania) using guano-derived δ13C isotopic data

NASA Astrophysics Data System (ADS)

Forray, Ferenc L.; Giurgiu, Alexandra; Onac, Bogdan P.; Tămaş, Tudor

2014-05-01

In this study, we measured the carbon isotopic composition of a core taken from a bat guano deposit in Zidita Cave (Metaliferi Mountains, Romania). The cave develops in Late Jurassic limestones, has a total length of 547 m, and its entrance was fortified during the XIV - XVIII centuries. The cave is a fossil maze with a filling represented by limestone blocks, clay sediments, and scarce calcite speleothems. The guano accumulation, 1.5 m thick, is located in a small room towards the end of the cave, under a Rhinolophus euryale roost site.The core was recovered with a Russian peat corer. 14C dating performed on the guano indicates a continuous deposition since ca. 500 years BP, but however, the upper first meter of the core has a modern age and high radiocarbon activity acquired from atmospheric radiocarbon bomb pulse. The core was sampled at 2 cm ± 2 mm intervals for δ13C analyses (76 samples) and at 5 cm for pollen. The investigations were carried out using a Picarro G2121-i δ13C analyzer (Combustion Module coupled with a Cavity Ring Down Spectroscopy technique) at the Stable Isotope Laboratory of the Department of Geology, Babes-Bolyai University (Cluj-Napoca, Romania). The result shows that guano δ13C range from -24.07 to -27.61 o‰The carbon isotopic profile indicates two major wet periods and 2 to 3 shorter periods characterized by drier climate.

Determination of Hydraulic and Transport Parameters of Organic Chemical and Inorganic Anions Solutes for Unfractured Cores of Berea Sandstone Using a Hydraulic Coreholder

NASA Astrophysics Data System (ADS)

Blanford, W. J.; Neil, L.

2017-12-01

To better evaluate the potential for toxic organic chemicals to migrate upward through the rock strata from hydraulic fracturing zones and into groundwater resources, a series of miscible displacement solute transport studies of cores of Berea Sandstone have been conducted using hydrostatic core holder. These tests involved passing aqueous solutions with natural background level of salts using a high pressure LC pump through 2 in wide by 3 in long unfractured cores held within the holder. Relative solute transport of 100 to 500ml pulses of target solutes including a series of chlorinated solvents and methylated benzenes was measured through in-line UV and fluorescence detectors and manual sampling and analysis with GCMS. The results found these sandstones to result in smooth ideal shaped breakthrough curves. Analysis with 1D transport models (CXTFIT) of the results found strong correlation with chemical parameters (diffusion coefficients, aqueous solubility, and octanol-water partitioning coefficients) showing that these parameter and QSPR relationships can be used to make accurate predictions for such a system. In addition to the results of the studies, lessons learned from this novel use of a coreholder for evaluation of porosity, water-saturated permeability, and solute transport of these sandstones (K = 1.5cm/day) and far less permeable sandstones samples (K = 0.15 cm/yr) from a hydraulic fracturing site in central Pennsylvania will be presented.

Spatial and seasonal variations of elemental composition in Mt. Everest (Qomolangma) snow/firn

NASA Astrophysics Data System (ADS)

Kang, Shichang; Zhang, Qianggong; Kaspari, Susan; Qin, Dahe; Cong, Zhiyuan; Ren, Jiawen; Mayewski, Paul A.

In May 2005, a total of 14 surface snow (0-10 cm) samples were collected along the climbing route from the advanced base camp to the summit (6500-8844 m a.s.l.) on the northern slope of Mt. Everest (Qomolangma). A 108 m firn/ice core was retrieved from the col of the East Rongbuk Glacier (28.03°N, 86.96°E, 6518 m a.s.l.) on the north eastern saddle of Mt. Everest in September 2002. Surface snow and the upper 3.5 m firn samples from the core were analyzed for major and trace elements by inductively coupled plasma mass spectroscopy (ICP-MS). Measurements show that crustal elements dominated both surface snow and the firn core, suggesting that Everest snow chemistry is mainly influenced by crustal aerosols from local rock or prevalent spring dust storms over southern/central Asia. There are no clear trends for element variations with elevation due to local crustal aerosol inputs or redistribution of surface snow by strong winds during the spring. Seasonal variability in snow/firn elements show that high elemental concentrations occur during the non-monsoon season and low values during the monsoon season. Ca, Cr, Cs, and Sr display the most distinct seasonal variations. Elemental concentrations (especially for heavy metals) at Mt. Everest are comparable with polar sites, generally lower than in suburban areas, and far lower than in large cities. This indicates that anthropogenic activities and heavy metal pollution have little effect on the Mt. Everest atmospheric environment. Everest firn core REE concentrations are the first reported in the region and seem to be comparable with those measured in modern and Last Glacial Maximum snow/ice samples from Greenland and Antarctica, and with precipitation samples from Japan and the East China Sea. This suggests that REE concentrations measured at Everest are representative of the background atmospheric environment.

Radiocesium distribution along the slope in the Iput river basin as a tracer of the contaminant secondary migration

NASA Astrophysics Data System (ADS)

Korobova, Elena; Romanov, Sergey; Beriozkin, Victor; Dogadkin, Nikolay

2016-04-01

The main goal of the study performed in 2014-2015 at the test site located in the abandoned zone of the Iput river basin was to study detailed patterns of Cs-137 redistribution along the terrace slope and the adjacent floodplain depression almost 30 years after the Chernobyl accident. Cs-137 surface activity was measured with the help of modified field gamma-spectrometer Violinist III (USA) in a grid 2 m x 2 m within the test plot sized 10 m x 24 m. Gamma-spectrometry was accompanied by topographical survey. Cs-137 depth distribution was studied by soil core sampling in increments of 2 cm and 5 cm down to 40 cm depth. Cs-137 activity in soil samples was measured in laboratory conditions by Nokia gamma-spectrometer. The results showed distinct natural dissimilarity of Cs-137 surface activity within the undisturbed soil of slope. Cs-137 depth migration in successive soil cores marked different patterns correlated with the position in relief. In particular cores Cs-137 depth variation correlated with water regime that shows that the processes of secondary distribution of Cs-137 along the slope obviously depend upon water migration. The finding is important for understanding of regularities in patterns of radiocesium spatial distribution.

U.S. Geological survey program on toxic waste--ground-water contamination; proceedings of the Second technical meeting, Cape Cod, Massachusetts, October 21-25, 1985

USGS Publications Warehouse

Ragone, S.E.

1988-01-01

This study characterizes the clay minerals in sediments associated with a plume of creosote-contaminated groundwater. The plume of contaminated groundwater near Pensacola, FL, is in shallow, permeable, Miocene to Holocene quartz sand and flows southward toward Pensacola Bay. Clay-size fractions were separated from 41 cores, chiefly split-spoon samples at 13 drill sites. The most striking feature of the chemical analyses of the clay fractions from uncontaminated site 2 and contaminated sites 4,5,6, and 7 is the variability of iron oxide (species in some samples as Fe2O3); total iron oxide abundance is lowest (2.5%) in uncontaminated sample 2-40, but is > 4.5% (4.5 to 8.5%) in the remaining assemblages. One feature suggesting interaction between the indigenous clays and the waste plume is the presence of nontronite-rich smectite. Nontronite commonly has been identified as the product of hydrothermal alteration and deep-sea weathering of submarine basalts; it is not a common constituent of Cenozoic Gulf Coast sediments. At the Pensacola site, relatively abundant nontronitic smectite is confined to contaminated sands or associated muds; it is least abundant or absent in sands and muds peripheral to the waste plume. The geochemistry of the waste plume, its substantial dissolved, (chiefly ferrous iron), mildly acidic (pH 5-6), and low redox composition, provides an environment similar to that previously determined for the low-temperature synthesis of nontronite. Data from clay-size fractions confirm conclusions that neoformed pyrite in some grain coatings occurs in an assemblage with excess iron over that required in the pyrite. Continuing studies to evaluate these tentative conclusions include: (1) chemical analysis of clay fractions from remaining sites to further examine the apparent relation between iron content and abundance of nontronitic smectite; (2) clay separation and analysis, and pore fluid extraction (squeezing or ultracentrifugation) and analysis from a continuous core through the mud lens to determine pore fluid composition (presence or absence of waste fluid), and character of associated clay minerals; and (3) clay separation and analysis in both permeable sands and the intervening mud lens that are clearly outside the limits of the waste plume to further document the effects of the plume. (See also W90-00022) (Lantz-PTT)

Effectiveness of Hydraulic Parameterization Strategies for Simulating Moisture Dynamics in a Deep Semi-Arid Vadose Zone

NASA Astrophysics Data System (ADS)

Zhang, Y.; Schaap, M. G.

2012-12-01

Over the past fifteen years, the University of Arizona has carried out four controlled infiltration experiments in a 3600 m2, 15 meter deep vadose zone (Maricopa, Arizona) in which the evolution of moisture content (9 wells, 25 cm resolution), and matric potential (27 locations) was monitored and the subsurface stratigraphy, texture (1042 samples), and bulk density (251 samples) was characterized. In order to simulate the subsurface moisture dynamics it is necessary to define the 3D structure of the subsurface hydraulic characteristics (i.e. moisture retention and hydraulic functions). Several simple to complex strategies are possible ranging from stratigraphy based layering using hydraulic parameters derived from core samples to sophisticated numerical inversions based on 3D geostatistics and site-specific pedotransfer functions. A range of approaches will be evaluated on objective metrics that quantify how well the observed moisture dynamics are matched by simulations. We will evaluate the worth of auxiliary data such as observed matric potentials and quantity the number of texture samples needed to arrive at effective descriptions of subsurface structure. In addition, we will discuss more subjective metrics that evaluate the relative effort involved and estimate monetary cost of each method. While some of the results will only be valid for the studied site, some general conclusions will be possible about the effectiveness of particular methods for other semi-arid sites.

Scale-dependent spatial variability in peatland lead pollution in the southern Pennines, UK.

PubMed

Rothwell, James J; Evans, Martin G; Lindsay, John B; Allott, Timothy E H

2007-01-01

Increasingly, within-site and regional comparisons of peatland lead pollution have been undertaken using the inventory approach. The peatlands of the Peak District, southern Pennines, UK, have received significant atmospheric inputs of lead over the last few hundred years. A multi-core study at three peatland sites in the Peak District demonstrates significant within-site spatial variability in industrial lead pollution. Stochastic simulations reveal that 15 peat cores are required to calculate reliable lead inventories at the within-site and within-region scale for this highly polluted area of the southern Pennines. Within-site variability in lead pollution is dominant at the within-region scale. The study demonstrates that significant errors may be associated with peatland lead inventories at sites where only a single peat core has been used to calculate an inventory. Meaningful comparisons of lead inventories at the regional or global scale can only be made if the within-site variability of lead pollution has been quantified reliably.

Geologic implications of gas hydrates in the offshore of India: results of the National Gas Hydrate Program Expedition 01

USGS Publications Warehouse

Collett, Timothy S.; Boswell, Ray; Cochran, J.R.; Kumar, Pushpendra; Lall, Malcolm; Mazumdar, Aninda; Ramana, Mangipudi Venkata; Ramprasad, Tammisetti; Riedel, Michael; Sain, Kalachand; Sathe, Arun Vasant; Vishwanath, Krishna

2014-01-01

One of the specific objectives of this expedition was to test gas hydrate formation models and constrain model parameters, especially those that account for the formation of concentrated gas hydrate accumulations. The necessary data for characterizing the occurrence of in situ gas hydrate, such as interstitial water chlorinities, core-derived gas chemistry, physical and sedimentological properties, thermal images of the recovered cores, and downhole measured logging data (LWD and/or conventional wireline log data), were obtained from most of the drill sites established during NGHP-01. Almost all of the drill sites yielded evidence for the occurrence of gas hydrate; however, the inferred in situ concentration of gas hydrate varied substantially from site to site. For the most part, the interpretation of downhole logging data, core thermal images, interstitial water analyses, and pressure core images from the sites drilled during NGHP-01 indicate that the occurrence of concentrated gas hydrate is mostly associated with the presence of fractures in the sediments, and in some limited cases, by coarser grained (mostly sand-rich) sediments.

HowTo - Easy use of global unique identifier

NASA Astrophysics Data System (ADS)

Czerniak, A.; Fleischer, D.; Schirnick, C.

2013-12-01

The GEOMAR sample- and core repository covers several thousands of samples and cores and was collected over the last decades. In the actual project, we bring this collection up to the new generation and tag every sample and core with a unique identifier, in our case the International Geo Sample Number (ISGN). This work is done with our digital Ink and hand writing recognition implementation. The Smart Pen technology was save time and resources to record the information on every sample or core. In the procedure of recording, there are several steps systematical are done: 1. Getting all information about the core or sample, such as cruise number, responsible person and so on. 2. Tag with unique identifiers, in our case a QR-Code. 3. Wrote down the location of sample or core. After transmitting the information from Smart Pen, actually via USB but wireless is a choice too, into our server infrastructure the link to other information began. As it linked in our Virtual Research Environment (VRE) with the unique identifier (ISGN) sample or core can be located and the QR-Code was simply linked back from core or sample to ISGN with additional scientific information. On the QR-Code all important information are on it and it was simple to produce thousand of it.

A novel fast ion chromatographic method for the analysis of fluoride in Antarctic snow and ice.

PubMed

Severi, Mirko; Becagli, Silvia; Frosini, Daniele; Marconi, Miriam; Traversi, Rita; Udisti, Roberto

2014-01-01

Ice cores are widely used to reconstruct past changes of the climate system. For instance, the ice core record of numerous water-soluble and insoluble chemical species that are trapped in snow and ice offer the possibility to investigate past changes of various key compounds present in the atmosphere (i.e., aerosol, reactive gases). We developed a new method for the quantitative determination of fluoride in ice cores at sub-μg L(-1) levels by coupling a flow injection analysis technique with a fast ion chromatography separation based on the "heart cut" column switching technology. Sensitivity, linear range (up to 60 μg L(-1)), reproducibility, and detection limit (0.02 μg L(-1)) were evaluated for the new method. This method was successfully applied to the analysis of fluoride at trace levels in more than 450 recent snow samples collected during the 1998-1999 International Trans-Antarctica Scientific Expedition traverse in East Antarctica at sites located between 170 and 850 km from the coastline.

Preparation and application of hollow molecularly imprinted polymers with a super-high selectivity to the template protein.

PubMed

Chen, Yang; He, Xi-Wen; Mao, Jie; Li, Wen-You; Zhang, Yu-Kui

2013-10-01

Protein-imprinted polymers with hollow cores that have a super-high imprinting factor were prepared by etching the core of the surface-imprinted polymers that used silica particles as the support. Lysozyme as template was modified onto the surface of silica particles by a covalent method, and after polymerization and the removal of template molecules, channels through the polymer layer were formed, which allowed a single-protein molecule to come into the hollow core and attach to the binding sites inside the polymer layer. The adsorption experiments demonstrated that the hollow imprinted polymers had an extremely high binding capacity and selectivity, and thus a super-high imprinting factor was obtained. The as-prepared imprinted polymers were used to separate the template lysozyme from egg white successfully, indicating its high selectivity and potential application in the field of separation of protein from real samples. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Palaeoecology of testate amoebae in a tropical peatland.

PubMed

Swindles, Graeme T; Lamentowicz, Mariusz; Reczuga, Monika; Galloway, Jennifer M

2016-09-01

We present the first detailed analysis of subfossil testate amoebae from a tropical peatland. Testate amoebae were analysed in a 4-m peat core from western Amazonia (Peru) and a transfer function developed from the site was applied to reconstruct changes in water table over the past ca. 8,000 years. Testate amoebae were in very low abundance in the core, especially in the lower 125cm, due to a combination of poor preservation and obscuration by other organic matter. A modified preparation method enabled at least 50 testate amoebae to be counted in each core sample. The most abundant taxa preserved include Centropyxis aculeata, Hyalosphenia subflava, Phryganella acropodia and Trigonopyxis arcula. Centropyxis aculeata, an unambiguous wet indicator, is variably present and indicates several phases of near-surface water table. Our work shows that even degraded, low-abundance assemblages of testate amoebae can provide useful information regarding the long-term ecohydrological developmental history of tropical peatlands. Copyright © 2015 Elsevier GmbH. All rights reserved.

The tissue micro-array data exchange specification: a web based experience browsing imported data

PubMed Central

Nohle, David G; Hackman, Barbara A; Ayers, Leona W

2005-01-01

Background The AIDS and Cancer Specimen Resource (ACSR) is an HIV/AIDS tissue bank consortium sponsored by the National Cancer Institute (NCI) Division of Cancer Treatment and Diagnosis (DCTD). The ACSR offers to approved researchers HIV infected biologic samples and uninfected control tissues including tissue cores in micro-arrays (TMA) accompanied by de-identified clinical data. Researchers interested in the type and quality of TMA tissue cores and the associated clinical data need an efficient method for viewing available TMA materials. Because each of the tissue samples within a TMA has separate data including a core tissue digital image and clinical data, an organized, standard approach to producing, navigating and publishing such data is necessary. The Association for Pathology Informatics (API) extensible mark-up language (XML) TMA data exchange specification (TMA DES) proposed in April 2003 provides a common format for TMA data. Exporting TMA data into the proposed format offers an opportunity to implement the API TMA DES. Using our public BrowseTMA tool, we created a web site that organizes and cross references TMA lists, digital "virtual slide" images, TMA DES export data, linked legends and clinical details for researchers. Microsoft Excel® and Microsoft Word® are used to convert tabular clinical data and produce an XML file in the TMA DES format. The BrowseTMA tool contains Extensible Stylesheet Language Transformation (XSLT) scripts that convert XML data into Hyper-Text Mark-up Language (HTML) web pages with hyperlinks automatically added to allow rapid navigation. Results Block lists, virtual slide images, legends, clinical details and exports have been placed on the ACSR web site for 14 blocks with 1623 cores of 2.0, 1.0 and 0.6 mm sizes. Our virtual microscope can be used to view and annotate these TMA images. Researchers can readily navigate from TMA block lists to TMA legends and to clinical details for a selected tissue core. Exports for 11 blocks with 3812 cores from three other institutions were processed with the BrowseTMA tool. Fifty common data elements (CDE) from the TMA DES were used and 42 more created for site-specific data. Researchers can download TMA clinical data in the TMA DES format. Conclusion Virtual TMAs with clinical data can be viewed on the Internet by interested researchers using the BrowseTMA tool. We have organized our approach to producing, sorting, navigating and publishing TMA information to facilitate such review. We have converted Excel TMA data into TMA DES XML, and imported it and TMA DES XML from another institution into BrowseTMA to produce web pages that allow us to browse through the merged data. We proposed enhancements to the TMA DES as a result of this experience. We implemented improvements to the API TMA DES as a result of using exported data from several institutions. A document type definition was written for the API TMA DES (that optionally includes proposed enhancements). Independent validators can be used to check exports against the DTD (with or without the proposed enhancements). Linking tissue core images to readily navigable clinical data greatly improves the value of the TMA. PMID:16086837

Analysis of Stomach and Gut Microbiomes of the Eastern Oyster (Crassostrea virginica) from Coastal Louisiana, USA

PubMed Central

King, Gary M.; Judd, Craig; Kuske, Cheryl R.; Smith, Conor

2012-01-01

We used high throughput pyrosequencing to characterize stomach and gut content microbiomes of Crassostrea virginica, the Easter oyster, obtained from two sites, one in Barataria Bay (Hackberry Bay) and the other in Terrebonne Bay (Lake Caillou), Louisiana, USA. Stomach microbiomes in oysters from Hackberry Bay were overwhelmingly dominated by Mollicutes most closely related to Mycoplasma; a more rich community dominated by Planctomyctes occurred in Lake Caillou oyster stomachs. Gut communities for oysters from both sites differed from stomach communities, and harbored a relatively diverse assemblage of phylotypes. Phylotypes most closely related to Shewanella and a Chloroflexi strain dominated the Lake Caillou and Hackberry Bay gut microbiota, respectively. While many members of the stomach and gut microbiomes appeared to be transients or opportunists, a putative core microbiome was identified based on phylotypes that occurred in all stomach or gut samples only. The putative core stomach microbiome comprised 5 OTUs in 3 phyla, while the putative core gut microbiome contained 44 OTUs in 12 phyla. These results collectively revealed novel microbial communities within the oyster digestive system, the functions of the oyster microbiome are largely unknown. A comparison of microbiomes from Louisiana oysters with bacterial communities reported for other marine invertebrates and fish indicated that molluscan microbiomes were more similar to each other than to microbiomes of polychaetes, decapods and fish. PMID:23251548

Analysis of Stomach and Gut Microbiomes of the Eastern Oyster (Crassostrea virginica) from Coastal Louisiana, USA

DOE PAGES

King, Gary M.; Judd, Craig; Kuske, Cheryl R.; ...

2012-12-12

In this paper, we used high throughput pyrosequencing to characterize stomach and gut content microbiomes of Crassostrea virginica, the Easter oyster, obtained from two sites, one in Barataria Bay (Hackberry Bay) and the other in Terrebonne Bay (Lake Caillou), Louisiana, USA. Stomach microbiomes in oysters from Hackberry Bay were overwhelmingly dominated by Mollicutes most closely related to Mycoplasma; a more rich community dominated by Planctomyctes occurred in Lake Caillou oyster stomachs. Gut communities for oysters from both sites differed from stomach communities, and harbored a relatively diverse assemblage of phylotypes. Phylotypes most closely related to Shewanella and a Chloroflexi strainmore » dominated the Lake Caillou and Hackberry Bay gut microbiota, respectively. While many members of the stomach and gut microbiomes appeared to be transients or opportunists, a putative core microbiome was identified based on phylotypes that occurred in all stomach or gut samples only. The putative core stomach microbiome comprised 5 OTUs in 3 phyla, while the putative core gut microbiome contained 44 OTUs in 12 phyla. These results collectively revealed novel microbial communities within the oyster digestive system, the functions of the oyster microbiome are largely unknown. Finally, a comparison of microbiomes from Louisiana oysters with bacterial communities reported for other marine invertebrates and fish indicated that molluscan microbiomes were more similar to each other than to microbiomes of polychaetes, decapods and fish.« less

Biocompatibility and safety of a hybrid core-shell nanoparticulate OP-1 delivery system intramuscularly administered in rats.

PubMed

Haidar, Ziyad S; Hamdy, Reggie C; Tabrizian, Maryam

2010-04-01

A hybrid, localized and release-controlled delivery system for bone growth factors consisting of a liposomal core incorporated into a shell of alternating layer-by-layer self-assembled natural polyelectrolytes has been formulated. Hydrophilic, monodisperse, spherical and stable cationic nanoparticles (< or =350 nm) with an extended shelf-life resulted. Cytocompatibility was previously assayed with MC3T3-E1.4 mouse preosteoblasts showing no adverse effects on cell viability. In this study, the in vivo biocompatibility of unloaded and loaded nanoparticles with osteogenic protein-1 or OP-1 was investigated. Young male Wistar rats were injected intramuscularly and monitored over a period of 10 weeks for signs of inflammation and/or adverse reactions. Blood samples (600 microL/collection) were withdrawn followed by hematological and biochemical analysis. Body weight changes over the treatment period were noted. Major organs were harvested, weighed and examined histologically for any pathological changes. Finally, the injection site was identified and examined immunohistochemically. Overall, all animals showed no obvious toxic health effects, immune responses and/or change in organ functions. This hybrid core-shell nanoparticulate delivery system localizes the effect of the released bioactive load within the site of injection in muscle with no significant tissue distress. Hence, a safe and promising carrier for therapeutic growth factors and possibly other biomolecules is presented. 2009 Elsevier Ltd. All rights reserved.

CMS Readiness for Multi-Core Workload Scheduling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Perez-Calero Yzquierdo, A.; Balcas, J.; Hernandez, J.

In the present run of the LHC, CMS data reconstruction and simulation algorithms benefit greatly from being executed as multiple threads running on several processor cores. The complexity of the Run 2 events requires parallelization of the code to reduce the memory-per- core footprint constraining serial execution programs, thus optimizing the exploitation of present multi-core processor architectures. The allocation of computing resources for multi-core tasks, however, becomes a complex problem in itself. The CMS workload submission infrastructure employs multi-slot partitionable pilots, built on HTCondor and GlideinWMS native features, to enable scheduling of single and multi-core jobs simultaneously. This provides amore » solution for the scheduling problem in a uniform way across grid sites running a diversity of gateways to compute resources and batch system technologies. This paper presents this strategy and the tools on which it has been implemented. The experience of managing multi-core resources at the Tier-0 and Tier-1 sites during 2015, along with the deployment phase to Tier-2 sites during early 2016 is reported. The process of performance monitoring and optimization to achieve efficient and flexible use of the resources is also described.« less

CMS readiness for multi-core workload scheduling

NASA Astrophysics Data System (ADS)

Perez-Calero Yzquierdo, A.; Balcas, J.; Hernandez, J.; Aftab Khan, F.; Letts, J.; Mason, D.; Verguilov, V.

2017-10-01

In the present run of the LHC, CMS data reconstruction and simulation algorithms benefit greatly from being executed as multiple threads running on several processor cores. The complexity of the Run 2 events requires parallelization of the code to reduce the memory-per- core footprint constraining serial execution programs, thus optimizing the exploitation of present multi-core processor architectures. The allocation of computing resources for multi-core tasks, however, becomes a complex problem in itself. The CMS workload submission infrastructure employs multi-slot partitionable pilots, built on HTCondor and GlideinWMS native features, to enable scheduling of single and multi-core jobs simultaneously. This provides a solution for the scheduling problem in a uniform way across grid sites running a diversity of gateways to compute resources and batch system technologies. This paper presents this strategy and the tools on which it has been implemented. The experience of managing multi-core resources at the Tier-0 and Tier-1 sites during 2015, along with the deployment phase to Tier-2 sites during early 2016 is reported. The process of performance monitoring and optimization to achieve efficient and flexible use of the resources is also described.

Angiographic Validation of the American College of Cardiology Foundation–The Society of Thoracic Surgeons Collaboration on the Comparative Effectiveness of Revascularization Strategies Study

PubMed Central

Chakrabarti, Anjan K.; Grau-Sepulveda, Maria V.; O’Brien, Sean; Abueg, Cassandra; Ponirakis, Angelo; Delong, Elizabeth; Peterson, Eric; Klein, Lloyd W.; Garratt, Kirk N.; Weintraub, William S.; Gibson, C. Michael

2017-01-01

Background The goal of this study was to compare angiographic interpretation of coronary arteriograms by sites in community practice versus those made by a centralized angiographic core laboratory. Methods and Results The study population consisted of 2013 American College of Cardiology–National Cardiovascular Data Registry (ACC–NCDR) records with 2- and 3- vessel coronary disease from 54 sites in 2004 to 2007. The primary analysis compared Registry (NCDR)-defined 2- and 3-vessel disease versus those from an angiographic core laboratory analysis. Vessel-level kappa coefficients suggested moderate agreement between NCDR and core laboratory analysis, ranging from kappa=0.39 (95% confidence intervals, 0.32–0.45) for the left anterior descending artery to kappa=0.59 (95% confidence intervals, 0.55–0.64) for the right coronary artery. Overall, 6.3% (n=127 out of 2013) of those patients identified with multivessel disease at NCDR sites had had 0- or 1-vessel disease by core laboratory reading. There was no directional bias with regard to overcall, that is, 12.3% of cases read as 3-vessel disease by the sites were read as <3-vessel disease by the core laboratory, and 13.9% of core laboratory 3-vessel cases were read as <3-vessel by the sites. For a subset of patients with left main coronary disease, registry overcall was not linked to increased rates of mortality or myocardial infarction. Conclusions There was only modest agreement between angiographic readings in clinical practice and those from an independent core laboratory. Further study will be needed because the implications for patient management are uncertain. PMID:24496239

Angiographic validation of the American College of Cardiology Foundation-the Society of Thoracic Surgeons Collaboration on the Comparative Effectiveness of Revascularization Strategies study.

PubMed

Chakrabarti, Anjan K; Grau-Sepulveda, Maria V; O'Brien, Sean; Abueg, Cassandra; Ponirakis, Angelo; Delong, Elizabeth; Peterson, Eric; Klein, Lloyd W; Garratt, Kirk N; Weintraub, William S; Gibson, C Michael

2014-02-01

The goal of this study was to compare angiographic interpretation of coronary arteriograms by sites in community practice versus those made by a centralized angiographic core laboratory. The study population consisted of 2013 American College of Cardiology-National Cardiovascular Data Registry (ACC-NCDR) records with 2- and 3- vessel coronary disease from 54 sites in 2004 to 2007. The primary analysis compared Registry (NCDR)-defined 2- and 3-vessel disease versus those from an angiographic core laboratory analysis. Vessel-level kappa coefficients suggested moderate agreement between NCDR and core laboratory analysis, ranging from kappa=0.39 (95% confidence intervals, 0.32-0.45) for the left anterior descending artery to kappa=0.59 (95% confidence intervals, 0.55-0.64) for the right coronary artery. Overall, 6.3% (n=127 out of 2013) of those patients identified with multivessel disease at NCDR sites had had 0- or 1-vessel disease by core laboratory reading. There was no directional bias with regard to overcall, that is, 12.3% of cases read as 3-vessel disease by the sites were read as <3-vessel disease by the core laboratory, and 13.9% of core laboratory 3-vessel cases were read as <3-vessel by the sites. For a subset of patients with left main coronary disease, registry overcall was not linked to increased rates of mortality or myocardial infarction. There was only modest agreement between angiographic readings in clinical practice and those from an independent core laboratory. Further study will be needed because the implications for patient management are uncertain.

Site Fidelity in Space Use by Spider Monkeys (Ateles geoffroyi) in the Yucatan Peninsula, Mexico

PubMed Central

Ramos-Fernandez, Gabriel; Smith Aguilar, Sandra E.; Schaffner, Colleen M.; Vick, Laura G.; Aureli, Filippo

2013-01-01

Animal home ranges may vary little in their size and location in the short term but nevertheless show more variability in the long term. We evaluated the degree of site fidelity of two groups of spider monkeys (Ateles geoffroyi) over a 10- and 13-year period, respectively, in the northeastern Yucatan peninsula, Mexico. We used the Local Convex Hull method to estimate yearly home ranges and core areas (defined as the 60% probability contour) for the two groups. Home ranges varied from 7.7 to 49.6 ha and core areas varied from 3.1 to 9.2 ha. We evaluated the degree of site fidelity by quantifying the number of years in which different areas were used as either home ranges or core areas. Large tracts were used only as home ranges and only for a few years, whereas small areas were used as either core area or home range for the duration of the study. The sum of the yearly core areas coincided partially with the yearly home ranges, indicating that home ranges contain areas used intermittently. Home ranges, and especially core areas, contained a higher proportion of mature forest than the larger study site as a whole. Across years and only in one group, the size of core areas was positively correlated with the proportion of adult males in the group, while the size of home ranges was positively correlated with both the proportion of males and the number of tree species included in the diet. Our findings suggest that spider monkey home ranges are the result of a combination of long-term site fidelity and year-to-year use variation to enable exploration of new resources. PMID:23675427

Patterns of DNA Methylation Across the Leptin Core Promoter in Four Diverse Asian and North American Populations.

PubMed

Mosher, M J; Melton, P E; Stapleton, P; Schanfield, M S; Crawford, M H

2016-04-01

DNA methylation is the most widely studied of epigenetic mechanisms, with environmental effects recorded through patterned attachments of methyl groups along the DNA that are capable of modifying gene expression without altering the DNA sequencing. The degree to which these patterns of DNA methylation are heritable, the expected range of normality across populations, and the phenotypic relevance of pattern variation remain unclear. Genes regulating metabolic pathways appear to be vulnerable to ongoing nutritional programming over the life course, as dietary nutrients are significant environmental determinants of DNA methylation, supplying both the methyl groups and energy to generate the methylation process. Here we examine methylation patterns along a region of the metabolic gene leptin (LEP). LEP's putative functions include regulation of energy homeostasis, with its signals affecting energy intake and expenditure, adipogenesis and energy storage, lipid and glucose metabolism, bone metabolism, and reproductive endocrine function. A pattern of differential methylation across CpG sites of the LEP core promoter has been previously identified; however, any consistency of pattern or its phenotypic significance is not fully elucidated among populations. Using DNA extracted from unfractionated white blood cells of peripheral blood samples, our pilot study, divided into two parts, examined the significance of variation in DNA methylation patterns along the leptin core promoter in four populations (phase 1) and used biomarkers reflecting leptin's functional process in two of those populations, western Buryat of Siberia and the Mennonite of central Kansas, to investigate the relevance of the ethnic variation identified in the DNA methylation (phase 2). LEP's core promoter region contains both the binding site for C/EBPα (CCAAT/enhancer binding protein alpha), which tempers the final step in adipocyte maturity and capacity to synthesize leptin, and the TATA motif controlling leptin synthesis. Previous studies report that increased methylation in this region is correlated to decreased gene expression, suggesting tissue-specific methylation variation at this region ( Melzner et al. 2002 ). We hypothesized that evidence of nutritional epigenetic programming would be identified through variation in patterns of DNA methylation and that functional relevance of that variation among populations would be identified through biomarkers that reflect leptin's metabolic signals: serum leptin levels, lipoproteins of the lipid transport system, and anthropometric measures. In phase 1, our combined analyses of 313 individuals documented a distinct and consistent overall pattern of differential DNA methylation across seven CpG sites of LEP core promoter in all ethnicities and both sexes. This pattern replicates those identified in previous studies, suggesting a conserved core promoter region across populations. Phase 2 analyses of two of the four populations (n = 239), correlating methylation at the C/EBPα transcription binding site (TBS) with metabolic and anthropometric biomarkers reflecting LEP roles, showed that stature, which reflects bone growth and remodeling, was significantly and inversely correlated with the percentage of DNA methylation at this site in both sexes. We suggest that variation in DNA methylation along the LEP core promoter plays a substantial role in energy signals affecting both adipogenesis and bone metabolism.

The Lindi Formation (upper Albian-Coniacian) and Tanzania Drilling Project Sites 36-40 (Lower Cretaceous to Paleogene): Lithostratigraphy, biostratigraphy and chemostratigraphy

NASA Astrophysics Data System (ADS)

Jiménez Berrocoso, Álvaro; Huber, Brian T.; MacLeod, Kenneth G.; Petrizzo, Maria Rose; Lees, Jacqueline A.; Wendler, Ines; Coxall, Helen; Mweneinda, Amina K.; Falzoni, Francesca; Birch, Heather; Haynes, Shannon J.; Bown, Paul R.; Robinson, Stuart A.; Singano, Joyce M.

2015-01-01

The 2009 Tanzania Drilling Project (TDP) expedition to southeastern Tanzania cored a total of 572.3 m of sediments at six new mid-Cretaceous to mid-Paleocene boreholes (TDP Sites 36, 37, 38, 39, 40A, 40B). Added to the sites drilled in 2007 and 2008, the new boreholes confirm the common excellent preservation of planktonic and benthic foraminifera and calcareous nannofossils from core samples that will be used for biostratigraphy, evolutionary studies, paleoceanography and climatic reconstructions from the Tanzanian margin, with implications elsewhere. The new sites verify the presence of a relatively expanded Upper Cretaceous succession in the region that has allowed a new stratigraphic unit, named here as the Lindi Formation (Fm), to be formally defined. The Lindi Fm (upper Albian to Coniacian), extending ∼120 km between Kilwa and Lindi, comprises a 335-m-thick, outer-shelf to upper-slope unit, consisting of dark gray claystone and siltstone interbeds, common finely-laminated intervals, minor cm-thick sandstones and up to 2.6% organic carbon in the Turonian. A subsurface, composite stratotype section is proposed for the Lindi Fm, with a gradational top boundary with the overlying Nangurukuru Fm (Santonian to Maastrichtian) and a sharp bottom contact with underlying upper Albian sandstones. The section cored at TDP Sites 36 and 38 belongs to the Lindi Fm and are of lower to middle Turonian age (planktonic foraminifera Whiteinella archaeocretacea to Helvetoglobotruncana helvetica Zones and nannofossils subzones UC6b ± UC7). The lower portion of TDP Site 39 (uppermost part of the Lindi Fm) is assigned to the lower to upper Coniacian (planktonic foraminifera Dicarinella concavata Zone and nannofossils zone UC 10), while the remaining part of this site is attributed to the Coniacian-Santonian transition and younger Santonian (planktonic foraminifera D. asymetrica Zone and upper part of nannofossils zone UC10). TDP Site 37 recovered relatively expanded (150 m thick), monotonous calcareous claystones from the lower to upper Maastrichtian (planktonic foraminifera Pseudoguembelina palpebra to Abathomphalus mayaroensis Zones and nannofossils zones UC19 to UC20aTP) that were separated by a hiatus and/or a faulted contact from overlying brecciated carbonates of the Selandian (middle Paleocene: PF Zone P3 and nannofossil zone NP5). The lower portion of TDP Sites 40A and 40B recovered sandstones and conglomerates barren of microfossils. Their overlying parts were assigned to incomplete sections of the nannofossil zones NC6A to NC8 (uppermost Barremian to lower Albian). Benthic foraminiferal assemblages allowed the Barremian to lower Aptian to be identified in TDP Sites 40A and 40B, while the upper Aptian to middle Albian (Hedbergella trocoidea to Ticinella primula Zones) were assigned using planktonic foraminifera. Cores recovered at TDP 39 (Coniacian-Santonian) and at TDP Sites 40A and 40B (Barremian-middle Albian) represent the first time that these two intervals have been continuously cored and publicly documented in Tanzania. Bulk sediment isotope records generated for the new sites show lower δ18Ocarb values in the Turonian and Santonian (∼-3.5‰ to -5‰) than in the Maastrichtian (∼-3‰), a situation consistent with extreme global warmth in the older intervals and cooling toward the end of the Cretaceous. Also, similar to Turonian sites from previous TDP expeditions, a negative δ13Corg excursion was detected across the W. archaeocretacea-H. helvetica boundary of TDP Site 36 (close to, but above, the Cenomanian-Turonian boundary). This excursion probably responded to local processes in the region, but it is unknown whether they were related to the recovery phase from Ocean Anoxic Event 2.

Financial management of a large multisite randomized clinical trial.

PubMed

Sheffet, Alice J; Flaxman, Linda; Tom, MeeLee; Hughes, Susan E; Longbottom, Mary E; Howard, Virginia J; Marler, John R; Brott, Thomas G

2014-08-01

The Carotid Revascularization Endarterectomy versus Stenting Trial (CREST) received five years' funding ($21 112 866) from the National Institutes of Health to compare carotid stenting to surgery for stroke prevention in 2500 randomized participants at 40 sites. Herein we evaluate the change in the CREST budget from a fixed to variable-cost model and recommend strategies for the financial management of large-scale clinical trials. Projections of the original grant's fixed-cost model were compared to the actual costs of the revised variable-cost model. The original grant's fixed-cost budget included salaries, fringe benefits, and other direct and indirect costs. For the variable-cost model, the costs were actual payments to the clinical sites and core centers based upon actual trial enrollment. We compared annual direct and indirect costs and per-patient cost for both the fixed and variable models. Differences between clinical site and core center expenditures were also calculated. Using a variable-cost budget for clinical sites, funding was extended by no-cost extension from five to eight years. Randomizing sites tripled from 34 to 109. Of the 2500 targeted sample size, 138 (5·5%) were randomized during the first five years and 1387 (55·5%) during the no-cost extension. The actual per-patient costs of the variable model were 9% ($13 845) of the projected per-patient costs ($152 992) of the fixed model. Performance-based budgets conserve funding, promote compliance, and allow for additional sites at modest additional cost. Costs of large-scale clinical trials can thus be reduced through effective management without compromising scientific integrity. © 2014 The Authors. International Journal of Stroke © 2014 World Stroke Organization.

Archaeological investigations on the Buckboard Mesa Road Project

DOE Office of Scientific and Technical Information (OSTI.GOV)

Amick, D.S.; Henton, G.H.; Pippin, L.C.

1991-10-01

In 1986, the Desert Research Institute (DRI) conducted an archaeological reconnaissance of a new alignment for the Buckboard Mesa Road on the Nevada Test Site for the Department of Energy (DOE). During this reconnaissance, several archaeological sites of National Register quality were discovered and recorded including a large quarry, site 26Ny4892, and a smaller lithic scatter, site 26Ny4894. Analysis of the debitage at 26Ny4892 indicates that this area was used primarily as a quarry for relatively small cobbles of obsidian found in the alluvium. Lithic reduction techniques used here are designed for efficiently reducing small pieces of toolstone and aremore » oriented towards producing flake blanks from small cores and bifacially reducing exhausted cores. Projectile point cross references indicate that the area has seen at least casual use for about 10,000 years and more sustained use for the last 3,000 years. Initial obsidian hydration measurements indicate sustained use of the quarry for about the last 3,000 years although the loci of activities appear to change over time. Based on this study, the DRI recommends that quarrying activities in the area of 26Ny4892 are sufficiently sampled and that additional investigations into that aspect of prehistoric activity in the area are not necessary. This does not apply to other aspects of prehistoric use. DRI recommends that preconstruction surveys continue to identify nonquarrying, prehistoric utilization of the area. With the increased traffic on the Buckboard Mesa Road, there is a greater potential for vandalism to sites of National Register-quality located near the road. The DRI recommends that during the orientation briefing the workers at the Test Site be educated about the importance of cultural resources and the need for their protection. 202 refs., 41 figs., 52 tabs.« less

Long-term Glacial History of the West Antarctic Ice Sheet from Cosmogenic Nuclides in a Subglacial Bedrock Core

NASA Astrophysics Data System (ADS)

Spector, P. E.; Stone, J.; Hillebrand, T.; Gombiner, J. H.

2017-12-01

To investigate the response of the West Antarctic Ice Sheet (WAIS) to climatic conditions warmer than present, we are analyzing cosmogenic nuclides in a bedrock core from beneath 150 m of ice at a site near the Pirrit Hills. Our aim is to determine whether the WAIS has thinned in the past, exposing bedrock at this site, and if so, when. This will help to determine the vulnerability of the ice sheet to future warming, and identify climatic thresholds capable of inducing WAIS collapse. We selected a site where the ice-sheet surface lies at 1300 m, approximately halfway from the ice-sheet divide to the grounding line. We expect ice thickness at the site to reflect WAIS dynamics, rather than local meteorology or topography. Ice flow speeds are moderate and ice above the core site is thin enough to remain cold-based, limiting the possibility of subglacial erosion which would compromise the cosmogenic nuclide record. We targeted a subglacial ridge adjacent to an exposed granite nunatak. This lithology provides minerals suitable for analysis of multiple cosmogenic nuclides with different half-lives. Although we aimed to collect two cores from different depths to compare exposure histories, hydrofracture of the basal ice prevented us from reaching the bed at the first drill site. The second hole produced 5.5 m of discontinuous ice core above 8 m of bedrock core. Initial analyses of quartz from the bedrock show low levels of Be-10. Further analyses of Be-10, Al-26, Cl-36 and Ne-21 from the full length of the core will be required to determine whether this is because the surface has never been exposed, or because the cosmogenic nuclide profile has been truncated by glacial erosion. We will present comprehensive cosmogenic nuclide data, and discuss implications for WAIS deglaciation history, at the meeting. Supported by US National Science Foundation awards ANT-1142162 and PLR-1341728.

Investigating the scale of structural controls on chlorinated hydrocarbon distributions in the fractured-porous unsaturated zone of a sandstone aquifer in the UK

NASA Astrophysics Data System (ADS)

Lawrence, Adrian; Stuart, Marianne; Cheney, Colin; Jones, Neil; Moss, Richard

2006-12-01

Contaminant migration behaviour in the unsaturated zone of a fractured porous aquifer is discussed in the context of a study site in Cheshire, UK. The site is situated on gently dipping sandstones, adjacent to a linear lagoon historically used to dispose of industrial wastes containing chlorinated solvents. Two cores of more than 100 m length were recovered and measurements of chlorinated hydrocarbons (CHCs), inorganic chemistry, lithology, fracturing and aquifer properties were made. The results show that selecting an appropriate vertical sampling density is crucial both to providing an understanding of contaminant pathways and distinguishing whether CHCs are present in the aqueous or non-aqueous phase. The spacing of such sampling should be on a similar scale to the heterogeneity that controls water and contaminant movement. For some sections of the Permo-Triassic aquifer, significant changes in lithology and permeability occur over vertical distances of less than 1 m and samples need to be collected at this interval, otherwise considerable resolution is lost, potentially leading to erroneous interpretation of data. At this site, although CHC concentrations were high, the consistent ratio of the two main components of the plume (tetrachloroethene and trichloroethene) provided evidence of movement in the aqueous phase rather than in dense non-aqueous phase liquid (DNAPL).

Closed-loop 15N measurement of N2O and its isotopomers for real-time greenhouse gas tracing

NASA Astrophysics Data System (ADS)

Slaets, Johanna; Mayr, Leopold; Heiling, Maria; Zaman, Mohammad; Resch, Christian; Weltin, Georg; Gruber, Roman; Dercon, Gerd

2016-04-01

Quantifying sources of nitrous oxide is essential to improve understanding of the global N cycle and to develop climate-smart agriculture, as N2O has a global warming potential 300 times higher than CO2. The isotopic signature and the intramolecular distribution (site preference) of 15N are powerful tools to trace N2O, but the application of these methods is limited as conventional methods cannot provide continuous and in situ data. Here we present a method for closed-loop, real time monitoring of the N2O flux, the isotopic signature and the intramolecular distribution of 15N by using off-axis integrated cavity output spectroscopy (ICOS, Los Gatos Research). The developed method was applied to a fertilizer inhibitor experiment, in which N2O emissions were measured on undisturbed soil cores for three weeks. The treatments consisted of enriched urea-N (100 kg urea-N/ha), the same fertilizer combined with the nitrification inhibitor nitrapyrin (375 g/100 kg urea), and control cores. Monitoring the isotopic signature makes it possible to distinguish emissions from soil and fertilizer. Characterization of site preference could additionally provide a tool to identify different microbial processes leading to N2O emissions. Furthermore, the closed-loop approach enables direct measurement on site and does not require removal of CO2 and H2O. Results showed that 75% of total N2O emissions (total=11 346 μg N2O-N/m2) in the fertilized cores originated from fertilizer, while only 55% of total emissions (total=2 450 μg N2ON/m2) stemmed from fertilizer for the cores treated with nitrapyrin. In the controls, N2O derived from soil was only 40% of the size of the corresponding pool from the fertilized cores, pointing towards a priming effect on the microbial community from the fertilizer and demonstrating the bias that could be introduced by relying on non-treated cores to estimate soil emission rates, rather than using the isotopic signature. The site preference increased linearly over time for the cores with fertilizer and those with nitrapyrin, but the increase was stronger for the fertilized cores: during the first 10 days of the experiment, theses cores showed a more negative site preference than the cores with inhibitor, while during the last 10 days, the site preference for the fertilized cores was more positive than that of the inhibitor. This change indicates that the site preference of 15N can be used to distinguish the processes of nitrification and denitrification, the former having been supressed by nitrapyrin in the cores treated with the inhibitor. Low enrichment levels (5% atomic excess in this study) sufficed in order to separate emissions from soil and fertilizer, making the proposed closed-loop approach a cost-effective and practical tool to obtain a continuous, in situ characterization of N2O sources.

Multichannel analysis of surface-waves and integration of downhole acoustic televiewer imaging, ultrasonic Vs and Vp, and vertical seismic profiling in an NEHRP-standard classification, South of Concordia, Kansas, USA

NASA Astrophysics Data System (ADS)

Raef, Abdelmoneam; Gad, Sabreen; Tucker-Kulesza, Stacey

2015-10-01

Seismic site characteristics, as pertaining to earthquake hazard reduction, are a function of the subsurface elastic moduli and the geologic structures. This study explores how multiscale (surface, downhole, and laboratory) datasets can be utilized to improve "constrained" average Vs30 (shear-wave velocity to a 30-meter depth). We integrate borehole, surface and laboratory measurements for a seismic site classification based on the standards of the National Earthquake Hazard Reduction Program (NEHRP). The seismic shear-wave velocity (Vs30) was derived from a geophysical inversion workflow that utilized multichannel analysis of surface-waves (MASW) and downhole acoustic televiewer imaging (DATI). P-wave and S-wave velocities, based on laboratory measurements of arrival times of ultrasonic-frequency signals, supported the workflow by enabling us to calculate Poisson's ratio, which was incorporated in building an initial model for the geophysical inversion of MASW. Extraction of core samples from two boreholes provided lithology and thickness calibration of the amplitudes of the acoustic televiewer imaging for each layer. The MASW inversion, for calculating Vs sections, was constrained with both ultrasonic laboratory measurements (from first arrivals of Vs and Vp waveforms at simulated in situ overburden stress conditions) and the downhole acoustic televiewer (DATV) amplitude logs. The Vs30 calculations enabled categorizing the studied site as NEHRP-class "C" - very dense soil and soft rock. Unlike shallow fractured carbonates in the studied area, S-wave and P-wave velocities at ultrasonic frequency for the deeper intact shale core-samples from two boreholes were in better agreement with the corresponding velocities from both a zero-offset vertical seismic profiling (VSP) and inversion of Rayleigh-wave velocity dispersion curves.

Effects of Sea Level Rise and Coastal Marsh Transgression on Soil Organic Matter in a Chesapeake Bay Salt Marsh

NASA Astrophysics Data System (ADS)

Van Allen, R.; Schreiner, K. M.; Guntenspergen, G. R.

2016-12-01

Salt marsh, mangrove swamp, and seagrass bed ecosystems comprise a global carbon stock known as "blue carbon." While vegetated coastal ecosystems have a small global areal extent, their total carbon burial rates are comparable to global marine carbon burial rates. Under global climate change-induced sea level rise, the role of these systems in the global carbon cycle could change significantly. This study aims to develop a more complete view of how coastal marsh transgression into terrestrial upland environments impacts soil organic matter characteristics. A US Geological Survey study site in Blackwater National Wildlife Refuge on the eastern coast of Chesapeake Bay, Maryland was chosen for this study. This marsh has undergone transgression into adjacent upland forest as local relative sea level has risen, making it an ideal location to study the source and stability of organic matter underlying the shifting marsh-forest boundary. Peat cores and vegetation samples were collected from the study site in May 2015 and June 2016. Care was taken to sample marsh soils underlying a range of elevations and vegetation types from the intertidal zone through the transition to upland forest. Radiocarbon and lead-210 dating give age estimates for basal peat layers within the cores. Analysis of stable carbon isotopes in bulk soils in this site suggests a broad shift towards C4-dominated marsh vegetation. Finally, cupric oxide oxidation products of soil organic matter provide information about the changing molecular organic geochemistry of the marsh soils as sea level rises and the marsh transgresses. This represents a novel molecular-level study of the changing organic geochemistry of marsh soils with sea level rise and resulting vegetation changes.