Are the Viking Lander sites representative of the surface of Mars?

NASA Technical Reports Server (NTRS)

Jakosky, B. M.; Christensen, P. R.

1986-01-01

Global remote sensing data of the Martian surface, collected by earth- and satellite-based instruments, are compared with data from the two Viking Landers to determine if the Lander data are representative of the Martian surface. The landing sites are boulder-strewn and feature abundant fine material and evidence of strong eolian forces. One site (VL-1) is in a plains-covered basin which is associated with volcanic activity; the VL-2 site is in the northern plains. Thermal IR, broadband albedo, color imaging and radar remote sensing has been carried out of the global Martian surface. The VL-1 data do not fit a general correlation observed between increases in 70-cm radar cross-sections and thermal inertia. A better fit is found with 12.5-cm cross sections, implying the presence of a thinner or discontinuous duricrust at the VL-1 site, compared to other higher-inertia regions. A thin dust layer is also present at the VL-2 site, based on the Lander reflectance data. The Lander sites are concluded to be among the three observed regions of anomalous reflectivity, which can be expected in low regions selected for the landings. Recommendations are furnished for landing sites of future surface probes in order to choose sites more typical of the global Martian surface.

DefenseLink Feature: Travels with Gates

Science.gov Websites

You have reached a collection of archived material. The content available is no longer being . If you wish to see the latest content, please visit the current version of the site. For persons with disabilities experiencing difficulties accessing content on archive.defense.gov, please use the DoD Section 508

10 CFR 72.182 - Design for physical protection.

Code of Federal Regulations, 2013 CFR

2013-01-01

... Physical Protection § 72.182 Design for physical protection. The design for physical protection must show the site layout and the design features provided to protect the ISFSI or MRS from sabotage. It must... 10 Energy 2 2013-01-01 2013-01-01 false Design for physical protection. 72.182 Section 72.182...

10 CFR 72.182 - Design for physical protection.

Code of Federal Regulations, 2010 CFR

2010-01-01

... Physical Protection § 72.182 Design for physical protection. The design for physical protection must show the site layout and the design features provided to protect the ISFSI or MRS from sabotage. It must... 10 Energy 2 2010-01-01 2010-01-01 false Design for physical protection. 72.182 Section 72.182...

10 CFR 72.182 - Design for physical protection.

Code of Federal Regulations, 2012 CFR

2012-01-01

... Physical Protection § 72.182 Design for physical protection. The design for physical protection must show the site layout and the design features provided to protect the ISFSI or MRS from sabotage. It must... 10 Energy 2 2012-01-01 2012-01-01 false Design for physical protection. 72.182 Section 72.182...

10 CFR 72.182 - Design for physical protection.

Code of Federal Regulations, 2014 CFR

2014-01-01

... Physical Protection § 72.182 Design for physical protection. The design for physical protection must show the site layout and the design features provided to protect the ISFSI or MRS from sabotage. It must... 10 Energy 2 2014-01-01 2014-01-01 false Design for physical protection. 72.182 Section 72.182...

10 CFR 72.182 - Design for physical protection.

Code of Federal Regulations, 2011 CFR

2011-01-01

... Physical Protection § 72.182 Design for physical protection. The design for physical protection must show the site layout and the design features provided to protect the ISFSI or MRS from sabotage. It must... 10 Energy 2 2011-01-01 2011-01-01 false Design for physical protection. 72.182 Section 72.182...

Ohio Environmental Education Areas.

ERIC Educational Resources Information Center

Melvin, Ruth W.

This is a guide to regional sites in Ohio which can be studied in regard to resource management; land use; the quality of air, water, soil; and reclamation. The first section of the guide includes brief descriptions of Ohio's natural features at the present time, accounts of past appearances and events, and predictions for the future. In the…

Imagine the Universe!. Version 2

NASA Technical Reports Server (NTRS)

Whitlock, Laura A.; Bene, Meredith; Cliffe, J. Allie; Lochner, James C.

1998-01-01

Imagine the Universe! gives students, teachers, and the general public a window on how high-energy astrophysics is used to probe the structure and evolution of the Universe. This is the universe as revealed by X-rays, gamma-rays and cosmic rays. Information about this exciting branch of astronomy is available in Imagine the Universe! at a variety of reading levels, and is illustrated with on-line graphics, animations, and movies. Information is presented on topics ranging from the Sun to black holes to X-ray and gamma-ray satellites. Imagine! also features a Teacher's Corner with study guides, lesson plans, and information on other education resources. Further descriptions of features of the Imagine! site and the other sites included on the CD-ROM may be found in sections V and VI of the booklet file.

Regional Curves of Bankfull Channel Geometry for Non-Urban Streams in the Piedmont Physiographic Province, Virginia

USGS Publications Warehouse

Lotspeich, R. Russell

2009-01-01

Natural-channel design involves constructing a stream channel with the dimensions, slope, and plan-view pattern that would be expected to transport water and sediment and yet maintain habitat and aesthetics consistent with unimpaired stream segments, or reaches. Regression relations for bankfull stream characteristics based on drainage area, referred to as 'regional curves,' are used in natural stream channel design to verify field determinations of bankfull discharge and stream channel characteristics. One-variable, ordinary least-squares regressions relating bankfull discharge, bankfull cross-sectional area, bankfull width, bankfull mean depth, and bankfull slope to drainage area were developed on the basis of data collected at 17 streamflow-gaging stations in rural areas with less than 20 percent urban land cover within the basin area (non-urban areas) of the Piedmont Physiographic Province in Virginia. These regional curves can be used to estimate the bankfull discharge and bankfull channel geometry when the drainage area of a watershed is known. Data collected included bankfull cross-sectional geometry, flood-plain geometry, and longitudinal profile data. In addition, particle-size distributions of streambed material were determined, and data on basin characteristics were compiled for each reach. Field data were analyzed to determine bankfull cross-sectional area, bankfull width, bankfull mean depth, bankfull discharge, bankfull channel slope, and D50 and D84 particle sizes at each site. The bankfull geometry from the 17 sites surveyed during this study represents the average of two riffle cross sections for each site. Regional curves developed for the 17 sites had coefficient of determination (R2) values of 0.950 for bankfull cross-sectional area, 0.913 for bankfull width, 0.915 for bankfull mean depth, 0.949 for bankfull discharge, and 0.497 for bankfull channel slope. The regional curves represent conditions for streams with defined channels and bankfull features in the Piedmont Physiographic Province in Virginia with drainage areas ranging from 0.29 to 111 square miles. All sites included in the development of the regional curves were located on streams with current or historical U.S. Geological Survey streamflow-gaging stations. These curves can be used to verify bankfull features identified in the field and bankfull stage for ungaged streams in non-urban areas.

Multiple double cross-section transmission electron microscope sample preparation of specific sub-10 nm diameter Si nanowire devices.

PubMed

Gignac, Lynne M; Mittal, Surbhi; Bangsaruntip, Sarunya; Cohen, Guy M; Sleight, Jeffrey W

2011-12-01

The ability to prepare multiple cross-section transmission electron microscope (XTEM) samples from one XTEM sample of specific sub-10 nm features was demonstrated. Sub-10 nm diameter Si nanowire (NW) devices were initially cross-sectioned using a dual-beam focused ion beam system in a direction running parallel to the device channel. From this XTEM sample, both low- and high-resolution transmission electron microscope (TEM) images were obtained from six separate, specific site Si NW devices. The XTEM sample was then re-sectioned in four separate locations in a direction perpendicular to the device channel: 90° from the original XTEM sample direction. Three of the four XTEM samples were successfully sectioned in the gate region of the device. From these three samples, low- and high-resolution TEM images of the Si NW were taken and measurements of the NW diameters were obtained. This technique demonstrated the ability to obtain high-resolution TEM images in directions 90° from one another of multiple, specific sub-10 nm features that were spaced 1.1 μm apart.

e-Health and new moms: Contextual factors associated with sources of health information.

PubMed

Walker, Lorraine O; Mackert, Michael S; Ahn, Jisoo; Vaughan, Misha W; Sterling, Bobbie S; Guy, Sarah; Hendrickson, Sherry

2017-11-01

Guided by the Uses and Gratifications approach, to examine mothers' use and preference of e-Health media, and associated contextual factors. Cross-sectional survey of 165 mothers (White, African-American, and Hispanic) from a stratified random sample. Use of online media about mother-baby care; favorite websites about motherhood and best-liked features of Web sites; channel preferences (Web site, postal mail, text) for receiving three types of health information; and contextual factors, e.g., education. Media use ranged from 96% for health information searches about babies to 46% for YouTube viewing about mother-baby topics. Contextual factors, such as education, were associated with media use. Babycenter was the most frequently reported favorite Web site and rich, relevant information was the best-liked feature. Across three health topics (weight, stress/depression, parenting) mothers preferred receiving information by Web site, followed by postal mail and least by text messaging (χ 2 statistics, p < .001). Stress and race/ethnicity were among factors associated with preferences. Mothers widely used e-Health related media, but use was associated with contextual factors. In public health efforts to reach new mothers, partnering with mother-favored Web sites, focusing on audience-relevant media, and adopting attributes of successful sites are recommended strategies. © 2017 Wiley Periodicals, Inc.

Clinical features, proximate causes, and consequences of active convulsive epilepsy in Africa

PubMed Central

Kariuki, Symon M; Matuja, William; Akpalu, Albert; Kakooza-Mwesige, Angelina; Chabi, Martin; Wagner, Ryan G; Connor, Myles; Chengo, Eddie; Ngugi, Anthony K; Odhiambo, Rachael; Bottomley, Christian; White, Steven; Sander, Josemir W; Neville, Brian G R; Newton, Charles R J C

2014-01-01

Purpose Epilepsy is common in sub-Saharan Africa (SSA), but the clinical features and consequences are poorly characterized. Most studies are hospital-based, and few studies have compared different ecological sites in SSA. We described active convulsive epilepsy (ACE) identified in cross-sectional community-based surveys in SSA, to understand the proximate causes, features, and consequences. Methods We performed a detailed clinical and neurophysiologic description of ACE cases identified from a community survey of 584,586 people using medical history, neurologic examination, and electroencephalography (EEG) data from five sites in Africa: South Africa; Tanzania; Uganda; Kenya; and Ghana. The cases were examined by clinicians to discover risk factors, clinical features, and consequences of epilepsy. We used logistic regression to determine the epilepsy factors associated with medical comorbidities. Key Findings Half (51%) of the 2,170 people with ACE were children and 69% of seizures began in childhood. Focal features (EEG, seizure types, and neurologic deficits) were present in 58% of ACE cases, and these varied significantly with site. Status epilepticus occurred in 25% of people with ACE. Only 36% received antiepileptic drugs (phenobarbital was the most common drug [95%]), and the proportion varied significantly with the site. Proximate causes of ACE were adverse perinatal events (11%) for onset of seizures before 18 years; and acute encephalopathy (10%) and head injury prior to seizure onset (3%). Important comorbidities were malnutrition (15%), cognitive impairment (23%), and neurologic deficits (15%). The consequences of ACE were burns (16%), head injuries (postseizure) (1%), lack of education (43%), and being unmarried (67%) or unemployed (57%) in adults, all significantly more common than in those without epilepsy. Significance There were significant differences in the comorbidities across sites. Focal features are common in ACE, suggesting identifiable and preventable causes. Malnutrition and cognitive and neurologic deficits are common in people with ACE and should be integrated into the management of epilepsy in this region. Consequences of epilepsy such as burns, lack of education, poor marriage prospects, and unemployment need to be addressed. PMID:24116877

Clinical features, proximate causes, and consequences of active convulsive epilepsy in Africa.

PubMed

Kariuki, Symon M; Matuja, William; Akpalu, Albert; Kakooza-Mwesige, Angelina; Chabi, Martin; Wagner, Ryan G; Connor, Myles; Chengo, Eddie; Ngugi, Anthony K; Odhiambo, Rachael; Bottomley, Christian; White, Steven; Sander, Josemir W; Neville, Brian G R; Newton, Charles R J C; Twine, Rhian; Gómez Olivé, F Xavier; Collinson, Mark; Kahn, Kathleen; Tollman, Stephen; Masanja, Honratio; Mathew, Alexander; Pariyo, George; Peterson, Stefan; Ndyomughenyi, Donald; Bauni, Evasius; Kamuyu, Gathoni; Odera, Victor Mung'ala; Mageto, James O; Ae-Ngibise, Ken; Akpalu, Bright; Agbokey, Francis; Adjei, Patrick; Owusu-Agyei, Seth; Kleinschmidt, Immo; Doku, Victor C K; Odermatt, Peter; Nutman, Thomas; Wilkins, Patricia; Noh, John

2014-01-01

Epilepsy is common in sub-Saharan Africa (SSA), but the clinical features and consequences are poorly characterized. Most studies are hospital-based, and few studies have compared different ecological sites in SSA. We described active convulsive epilepsy (ACE) identified in cross-sectional community-based surveys in SSA, to understand the proximate causes, features, and consequences. We performed a detailed clinical and neurophysiologic description of ACE cases identified from a community survey of 584,586 people using medical history, neurologic examination, and electroencephalography (EEG) data from five sites in Africa: South Africa; Tanzania; Uganda; Kenya; and Ghana. The cases were examined by clinicians to discover risk factors, clinical features, and consequences of epilepsy. We used logistic regression to determine the epilepsy factors associated with medical comorbidities. Half (51%) of the 2,170 people with ACE were children and 69% of seizures began in childhood. Focal features (EEG, seizure types, and neurologic deficits) were present in 58% of ACE cases, and these varied significantly with site. Status epilepticus occurred in 25% of people with ACE. Only 36% received antiepileptic drugs (phenobarbital was the most common drug [95%]), and the proportion varied significantly with the site. Proximate causes of ACE were adverse perinatal events (11%) for onset of seizures before 18 years; and acute encephalopathy (10%) and head injury prior to seizure onset (3%). Important comorbidities were malnutrition (15%), cognitive impairment (23%), and neurologic deficits (15%). The consequences of ACE were burns (16%), head injuries (postseizure) (1%), lack of education (43%), and being unmarried (67%) or unemployed (57%) in adults, all significantly more common than in those without epilepsy. There were significant differences in the comorbidities across sites. Focal features are common in ACE, suggesting identifiable and preventable causes. Malnutrition and cognitive and neurologic deficits are common in people with ACE and should be integrated into the management of epilepsy in this region. Consequences of epilepsy such as burns, lack of education, poor marriage prospects, and unemployment need to be addressed. Wiley Periodicals, Inc. © 2013 The Authors. Epilepsia published by Wiley Periodicals, Inc. on behalf of the International League Against Epilepsy.

Phylogenetic patterns and correlation of key structures for jumping: bone crests and cross-sectional areas of muscles in Leptodactylus (Anura, Leptodactylidae).

PubMed

Ponssa, María Laura; Fratani, Jéssica; Abdala, Virginia

2018-05-01

Anurans are characterized by their saltatory mode of locomotion, which is associated with a specific morphology. The coordinated action of the muscles and bones of the pelvic girdle is key to the transmission of the force of the hindlimbs to the axial skeleton during jumping. Two features are critical for optimal locomotory performance: the cross-sectional area of muscle and the bone crest attachment sites. The first character is a proxy of the force exerted by the muscle, whereas the crests are muscle attachments sites related to muscle force. The provisory relationship between these features has previously been identified and bone crest size can be used to infer the magnitude and, therefore, muscle force in fossils records. In this work, we explore the correlation between the cross-sectional area of essential muscles to the jumping mechanism (longissimus dorsi, extensor iliotibialis B, tenuissimus, puboischiofemoralis internus B, coccygeo-sacralis and coccygeo-iliacus) and the bone crests where these muscles are inserted (dorsal tubercle, dorsal crest and urostylar crest) in species of the genus Leptodactylus. This genus, along with other leptodactylids, exhibits a diversity of locomotor modes, including jumping, hopping, swimming and burrowing. We therefore analyzed the morphometric variation in the two features, cross-sectional area and bone crest area, expecting a correlation with different locomotor types. Our results showed: (i) a correlation between the urostylar crest and the cross-sectional area of the related muscles; (ii) that the bone crest surface area of urostyle and ilium and the cross-sectional area of the corresponding muscles can be utilized to infer locomotor faculties in leptodactylid frogs; and (iii) that the evolution of both characters demonstrates a general tendency from lower values in leptodactylid ancestors to higher values in the Leptodactylus genus. The results attest to the importance of the comparison of current ecological and phylogenetic analogues as they allow us to infer functionality and behavior in fossil and extant groups based on skeletal evidence. Phylogenetic patterns in character evolution and their correlation with locomotory types could imply that functional restrictions are also inherited in leptodactylid. © 2018 Anatomical Society.

SEM stereo-section fractography (SSF) observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, X.J.; Tregoning, R.L.; Armstrong, R.W.

1997-12-31

Cleavage initiation in engineering materials is governed by local microstructural inhomogeneities. These features are often the principal reason for the large scatter evident in fracture toughness measurements which, in extreme cases, can mask the fundamental relationship between cracking resistance and global material properties. The SEM stereo-section fractography (SSF) technique can be used to carefully evaluate these local inhomogeneities through simultaneous observation of both the fracture surface and the underlying microstructure. By sectioning the fracture surface close to the cleavage initiation site (within 10 {micro}m), and perpendicular to both the fracture surface and the precrack front, a direct correspondence between initiationmore » and the local microstructure can be established. Information obtained from this technique can provide quantitative input about important, local microstructural features which can then be used to calibrate or create realistic micromechanical models. A compendium of SSF results is presented herein for cleavage cracking in disparate materials (A533B steel plates, MIL-70S multi-pass weldments, and Ti6A14V forgings), under various testing conditions. In each case, the SSF technique was able to unambiguously identify the dominant, local features which triggered cleavage initiation.« less

SEM stereo-section fractography observations. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, X.J.; Tregoning, R.L.; Armstrong, R.W.

1998-05-01

Cleavage initiation in engineering materials is governed by local microstructural inhomogeneities. These features are often the principal reason for the large scatter evident in fracture toughness measurements which, in extreme cases, can mask the fundamental relationship between cracking resistance and global material properties. The SEM stereo-section fractography (SSF) technique can be used to carefully evaluate these local inhomogeneities through simultaneous observation of both the fracture surface and the underlying microstructure. By sectioning the fracture surface close to the cleavage initiation site (within 10 microns), and perpendicular to both the fracture surface and the pre crack front, a direct correspondence betweenmore » initiation and the local microstructure can be established. Information obtained from this technique can provide quantitative input about important, local microstructural features which can then be used to calibrate or create realistic micromechanical models. A compendium of SSF results is presented herein for cleavage cracking in disparate materials (A533B steel plates, MIL-70S multi-pass weldments, and Ti6A14V forgings), under various testing conditions. In each case, the SSF technique was able to unambiguously identify the dominant, local features which triggered cleavage initiation.« less

Applying dam height-storage curve to geomorphic features analysis within virtual geographic environment: a case study of the Hong-Shi-Mao watershed

NASA Astrophysics Data System (ADS)

Wang, Daojun; Gong, Jianhua; Ma, Ainai; Li, Wenhang; Wang, Xijun

2005-10-01

There are generally two kinds of approaches to studying geomorphic features in terms of the quantification level and difference of major considerations. One is the earlier qualitative characterization, and the other is the 2-dimension measurement that includes section pattern and projection pattern. With the development of geo-information technology, especially the 3-D geo-visualization and virtual geographic environments (VGE), 3-dimension measurement and dynamic interactive between users and geo-data/geo-graphics can be developed to understand geomorphic features deeply, and to benefit to the effective applications of such features for geographic projects like dam construction. Storage-elevation curve is very useful for site selection of projects and flood dispatching in water conservancy region, but it is just a tool querying one value from the other one. In fact, storage-elevation curve can represent comprehensively the geomorphic features including vertical section, cross section of the stream and the landform nearby. In this paper, we use quadratic regression equation shaped like y = ax2 + bx + c and the DEM data of Hong-Shi-Mao watershed, Zi Chang County, ShaanXi Province, China to find out the relationship between the coefficients of the equation and the geomorphic features based on VGE platform. It's exciting that the coefficient "a" appear to be correlative strongly with the stream scale, and the coefficient "b" may give an index to the valley shape. In the end, we use a sub-basin named Hao-Jia-Gou of the watershed as an application. The result of correlative research about quadratic regression equation and geomorphic features can save computing and improve the efficiency in silt dam systems planning.

77 FR 46128 - Proposed Revision 0 to Standard Review Plan Section 19.5: Adequacy of Design Features and...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-02

... searching on http://www.regulations.gov under Docket ID NRC-2012-0180. You may submit comments by any of the following methods: Federal rulemaking Web site: Go to http://www.regulations.gov and search for Docket ID..., Policy Branch, Division of Advanced Reactors and Rulemaking, Office of New Reactors, U.S. Nuclear...

a Study of Electrical Structures of Shanchiao Fault in Taiwan Using Audio-Frequency Magnetotelluric (amt) Method

NASA Astrophysics Data System (ADS)

Yang, C.; Liu, H.

2007-12-01

The Shanchiao normal fault is located in the western edge of Taipei basin in an N-E to S-W direction. Since the fault crosses through the Tertiary basement of Taipei basin, it is classified as an active fault. The overburden of the fault is sediments with a thickness around few tenth meters to several hundred meters. No detailed studies related to the Shanchiao fault in the western side of Taipei Basin are reported. In addition, there are no outcrops which have been found on the surface. This part of fault seems to be a potential source of disaster for the development of western Taipei basin. The audio-frequency magnetotelluric (AMT) method is a technique used to find the vertical resistivity distribution of formation and to characterize a fault structure through the ground surface based measurement. Based on the geological investigation and lithogic information from wells, the AMT data from six soundings at Wugu site, nine soundings at XinZhuang site and eight sounding at GuanDu site were collected on a NE-SW profile, approximately perpendicular to the prospective strike of the Shanchiao fault. AMT data were then inverted for two- dimension resistivity models (sections). The features of all resistivity sections are similar; an apparent drop in resistivity was observed at the position correlates to the western edge of Taipei basin. The predicted location of Shanchiao fault matches was verified by the lithologic sections of boreholes nearby. It indicates that the Shanchiao normal fault may associate with the subsidence of Taipei basin. The basement is clearly detected as a geoelectrical unit having resistivity less than 250 . It has a trend of increasing its depth toward S-E. The uplift of layers in the east of resistivity sections may affect by the XinZhuang thrust fault from the east. As with each site, the calculated resistivity may affect by cultural interference. However, the AMT survey still successfully delineates the positions and features of the Shanchiao fault and western edge of Taipei basin. Keywords¡GCSAMT, RIP, Shanchiao fault

Miocene actinommid Radiolaria from the equatorial Pacific

USGS Publications Warehouse

Blueford, J.R.

1982-01-01

Actinommids (spumellarian Radiolaria) are a group of microfossils in which taxonomy and phylogeny hitherto have been based on features of morphology that change with the growth of individuals. To make Miocene actinommids from the equatorial Pacific useful in biostratigraphy, paleocenography, and paleoecology, ontogenetically invariant morphological features can be analyzed by methods of numerical taxonomy to group the specimens into genera, which are further subdivided into species by visual comparison. According to these criteria, 31 species, 18 of which are new, are recognized in the Late Miocene section of DSDP Sites 77 and 289, and an informal revision of actinommid higher taxa is tentatively proposed.

National Program for Inspection of Non-Federal Dams. Baker Floodwater Reservoir Site 11 (NH 00478), NHWRB No. 249.13, Merrimack River Basin, Wentworth, New Hampshire. Phase I Inspection Report.

DTIC Science & Technology

1979-07-01

General 5-1 b. Design Data 5-1 c. Experience Data 5-1 d. Visual Observation 5-1 e. Overtopping Potential 5-1 f. Dam Failure Analysis 5-2 6. STRUCTURAL...the Soil Conservation Service, Durham, New Hampshire. The construction * contractor was Robie Construction Company , Inc. i. Normal Operating...INVENTORY OF DAMS P 0O - ... - SECTION 5 HYDROLOGY AND HYDRAULIC ANALYSIS • 5.1 Evaluation of Features a. General. Baker Dam Site 11 is an earthen

Prediction of active sites of enzymes by maximum relevance minimum redundancy (mRMR) feature selection.

PubMed

Gao, Yu-Fei; Li, Bi-Qing; Cai, Yu-Dong; Feng, Kai-Yan; Li, Zhan-Dong; Jiang, Yang

2013-01-27

Identification of catalytic residues plays a key role in understanding how enzymes work. Although numerous computational methods have been developed to predict catalytic residues and active sites, the prediction accuracy remains relatively low with high false positives. In this work, we developed a novel predictor based on the Random Forest algorithm (RF) aided by the maximum relevance minimum redundancy (mRMR) method and incremental feature selection (IFS). We incorporated features of physicochemical/biochemical properties, sequence conservation, residual disorder, secondary structure and solvent accessibility to predict active sites of enzymes and achieved an overall accuracy of 0.885687 and MCC of 0.689226 on an independent test dataset. Feature analysis showed that every category of the features except disorder contributed to the identification of active sites. It was also shown via the site-specific feature analysis that the features derived from the active site itself contributed most to the active site determination. Our prediction method may become a useful tool for identifying the active sites and the key features identified by the paper may provide valuable insights into the mechanism of catalysis.

An evaluation of applicability of seismic refraction method in identifying shallow archaeological features A case study at archaeological site

NASA Astrophysics Data System (ADS)

Jahangardi, Morteza; Hafezi Moghaddas, Naser; Keivan Hosseini, Sayyed; Garazhian, Omran

2015-04-01

We applied the seismic refraction method at archaeological site, Tepe Damghani located in Sabzevar, NE of Iran, in order to determine the structures of archaeological interests. This pre-historical site has special conditions with respect to geographical location and geomorphological setting, so it is an urban archaeological site, and in recent years it has been used as an agricultural field. In spring and summer of 2012, the third season of archaeological excavation was carried out. Test trenches of excavations in this site revealed that cultural layers were often disturbed adversely due to human activities such as farming and road construction in recent years. Conditions of archaeological cultural layers in southern and eastern parts of Tepe are slightly better, for instance, in test trench 3×3 m²1S03, third test trench excavated in the southern part of Tepe, an adobe in situ architectural structure was discovered that likely belongs to cultural features of a complex with 5 graves. After conclusion of the third season of archaeological excavation, all of the test trenches were filled with the same soil of excavated test trenches. Seismic refraction method was applied with12 channels of P geophones in three lines with a geophone interval of 0.5 meter and a 1.5 meter distance between profiles on test trench 1S03. The goal of this operation was evaluation of applicability of seismic method in identification of archaeological features, especially adobe wall structures. Processing of seismic data was done with the seismic software, SiesImager. Results were presented in the form of seismic section for every profile, so that identification of adobe wall structures was achieved hardly. This could be due to that adobe wall had been built with the same materials of the natural surrounding earth. Thus, there is a low contrast and it has an inappropriate effect on seismic processing and identifying of archaeological features. Hence the result could be that application of the seismic method in order to determine the archaeological features, having the same conditions, is not affordable and efficient in comparison to GPR or magnetic methods which yield more desirable results.

Features of traffic and transit internet sites

DOT National Transportation Integrated Search

2000-02-01

This paper summarizes the current state of internet sites with respect to these features, first : considering whether sites with the features are available in metro areas, then comparing sites : developed by public and private sectors. In order to de...

Prediction of Protein Modification Sites of Pyrrolidone Carboxylic Acid Using mRMR Feature Selection and Analysis

PubMed Central

Zheng, Lu-Lu; Niu, Shen; Hao, Pei; Feng, KaiYan; Cai, Yu-Dong; Li, Yixue

2011-01-01

Pyrrolidone carboxylic acid (PCA) is formed during a common post-translational modification (PTM) of extracellular and multi-pass membrane proteins. In this study, we developed a new predictor to predict the modification sites of PCA based on maximum relevance minimum redundancy (mRMR) and incremental feature selection (IFS). We incorporated 727 features that belonged to 7 kinds of protein properties to predict the modification sites, including sequence conservation, residual disorder, amino acid factor, secondary structure and solvent accessibility, gain/loss of amino acid during evolution, propensity of amino acid to be conserved at protein-protein interface and protein surface, and deviation of side chain carbon atom number. Among these 727 features, 244 features were selected by mRMR and IFS as the optimized features for the prediction, with which the prediction model achieved a maximum of MCC of 0.7812. Feature analysis showed that all feature types contributed to the modification process. Further site-specific feature analysis showed that the features derived from PCA's surrounding sites contributed more to the determination of PCA sites than other sites. The detailed feature analysis in this paper might provide important clues for understanding the mechanism of the PCA formation and guide relevant experimental validations. PMID:22174779

Quantifying site-specific physical heterogeneity within an estuarine seascape

USGS Publications Warehouse

Kennedy, Cristina G.; Mather, Martha E.; Smith, Joseph M.

2017-01-01

Quantifying physical heterogeneity is essential for meaningful ecological research and effective resource management. Spatial patterns of multiple, co-occurring physical features are rarely quantified across a seascape because of methodological challenges. Here, we identified approaches that measured total site-specific heterogeneity, an often overlooked aspect of estuarine ecosystems. Specifically, we examined 23 metrics that quantified four types of common physical features: (1) river and creek confluences, (2) bathymetric variation including underwater drop-offs, (3) land features such as islands/sandbars, and (4) major underwater channel networks. Our research at 40 sites throughout Plum Island Estuary (PIE) provided solutions to two problems. The first problem was that individual metrics that measured heterogeneity of a single physical feature showed different regional patterns. We solved this first problem by combining multiple metrics for a single feature using a within-physical feature cluster analysis. With this approach, we identified sites with four different types of confluences and three different types of underwater drop-offs. The second problem was that when multiple physical features co-occurred, new patterns of total site-specific heterogeneity were created across the seascape. This pattern of total heterogeneity has potential ecological relevance to structure-oriented predators. To address this second problem, we identified sites with similar types of total physical heterogeneity using an across-physical feature cluster analysis. Then, we calculated an additive heterogeneity index, which integrated all physical features at a site. Finally, we tested if site-specific additive heterogeneity index values differed for across-physical feature clusters. In PIE, the sites with the highest additive heterogeneity index values were clustered together and corresponded to sites where a fish predator, adult striped bass (Morone saxatilis), aggregated in a related acoustic tracking study. In summary, we have shown general approaches to quantifying site-specific heterogeneity.

Prediction of Protein-Protein Interaction Sites by Random Forest Algorithm with mRMR and IFS

PubMed Central

Li, Bi-Qing; Feng, Kai-Yan; Chen, Lei; Huang, Tao; Cai, Yu-Dong

2012-01-01

Prediction of protein-protein interaction (PPI) sites is one of the most challenging problems in computational biology. Although great progress has been made by employing various machine learning approaches with numerous characteristic features, the problem is still far from being solved. In this study, we developed a novel predictor based on Random Forest (RF) algorithm with the Minimum Redundancy Maximal Relevance (mRMR) method followed by incremental feature selection (IFS). We incorporated features of physicochemical/biochemical properties, sequence conservation, residual disorder, secondary structure and solvent accessibility. We also included five 3D structural features to predict protein-protein interaction sites and achieved an overall accuracy of 0.672997 and MCC of 0.347977. Feature analysis showed that 3D structural features such as Depth Index (DPX) and surface curvature (SC) contributed most to the prediction of protein-protein interaction sites. It was also shown via site-specific feature analysis that the features of individual residues from PPI sites contribute most to the determination of protein-protein interaction sites. It is anticipated that our prediction method will become a useful tool for identifying PPI sites, and that the feature analysis described in this paper will provide useful insights into the mechanisms of interaction. PMID:22937126

River meanders and channel size

USGS Publications Warehouse

Williams, G.P.

1986-01-01

This study uses an enlarged data set to (1) compare measured meander geometry to that predicted by the Langbein and Leopold (1966) theory, (2) examine the frequency distribution of the ratio radius of curvature/channel width, and (3) derive 40 empirical equations (31 of which are original) involving meander and channel size features. The data set, part of which comes from publications by other authors, consists of 194 sites from a large variety of physiographic environments in various countries. The Langbein-Leopold sine-generated-curve theory for predicting radius of curvature agrees very well with the field data (78 sites). The ratio radius of curvature/channel width has a modal value in the range of 2 to 3, in accordance with earlier work; about one third of the 79 values is less than 2.0. The 40 empirical relations, most of which include only two variables, involve channel cross-section dimensions (bankfull area, width, and mean depth) and meander features (wavelength, bend length, radius of curvature, and belt width). These relations have very high correlation coefficients, most being in the range of 0.95-0.99. Although channel width traditionally has served as a scale indicator, bankfull cross-sectional area and mean depth also can be used for this purpose. ?? 1986.

Raman spectroscopic analysis of human skin tissue sections ex-vivo: evaluation of the effects of tissue processing and dewaxing

NASA Astrophysics Data System (ADS)

Ali, Syed M.; Bonnier, Franck; Tfayli, Ali; Lambkin, Helen; Flynn, Kathleen; McDonagh, Vincent; Healy, Claragh; Clive Lee, T.; Lyng, Fiona M.; Byrne, Hugh J.

2013-06-01

Raman spectroscopy coupled with K-means clustering analysis (KMCA) is employed to elucidate the biochemical structure of human skin tissue sections and the effects of tissue processing. Both hand and thigh sections of human cadavers were analyzed in their unprocessed and formalin-fixed, paraffin-processed (FFPP), and subsequently dewaxed forms. In unprocessed sections, KMCA reveals clear differentiation of the stratum corneum (SC), intermediate underlying epithelium, and dermal layers for sections from both anatomical sites. The SC is seen to be relatively rich in lipidic content; the spectrum of the subjacent layers is strongly influenced by the presence of melanin, while that of the dermis is dominated by the characteristics of collagen. For a given anatomical site, little difference in layer structure and biochemistry is observed between samples from different cadavers. However, the hand and thigh sections are consistently differentiated for all cadavers, largely based on lipidic profiles. In dewaxed FFPP samples, while the SC, intermediate, and dermal layers are clearly differentiated by KMCA of Raman maps of tissue sections, the lipidic contributions to the spectra are significantly reduced, with the result that respective skin layers from different anatomical sites become indistinguishable. While efficient at removing the fixing wax, the tissue processing also efficiently removes the structurally similar lipidic components of the skin layers. In studies of dermatological processes in which lipids play an important role, such as wound healing, dewaxed samples are therefore not appropriate. Removal of the lipids does however accentuate the spectral features of the cellular and protein components, which may be more appropriate for retrospective analysis of disease progression and biochemical analysis using tissue banks.

Prediction of lysine ubiquitylation with ensemble classifier and feature selection.

PubMed

Zhao, Xiaowei; Li, Xiangtao; Ma, Zhiqiang; Yin, Minghao

2011-01-01

Ubiquitylation is an important process of post-translational modification. Correct identification of protein lysine ubiquitylation sites is of fundamental importance to understand the molecular mechanism of lysine ubiquitylation in biological systems. This paper develops a novel computational method to effectively identify the lysine ubiquitylation sites based on the ensemble approach. In the proposed method, 468 ubiquitylation sites from 323 proteins retrieved from the Swiss-Prot database were encoded into feature vectors by using four kinds of protein sequences information. An effective feature selection method was then applied to extract informative feature subsets. After different feature subsets were obtained by setting different starting points in the search procedure, they were used to train multiple random forests classifiers and then aggregated into a consensus classifier by majority voting. Evaluated by jackknife tests and independent tests respectively, the accuracy of the proposed predictor reached 76.82% for the training dataset and 79.16% for the test dataset, indicating that this predictor is a useful tool to predict lysine ubiquitylation sites. Furthermore, site-specific feature analysis was performed and it was shown that ubiquitylation is intimately correlated with the features of its surrounding sites in addition to features derived from the lysine site itself. The feature selection method is available upon request.

Food marketing on popular children's web sites: a content analysis.

PubMed

Alvy, Lisa M; Calvert, Sandra L

2008-04-01

In 2006 the Institute of Medicine (IOM) concluded that food marketing was a contributor to childhood obesity in the United States. One recommendation of the IOM committee was for research on newer marketing venues, such as Internet Web sites. The purpose of this cross-sectional study was to answer the IOM's call by examining food marketing on popular children's Web sites. Ten Web sites were selected based on market research conducted by KidSay, which identified favorite sites of children aged 8 to 11 years during February 2005. Using a standardized coding form, these sites were examined page by page for the existence, type, and features of food marketing. Web sites were compared using chi2 analyses. Although food marketing was not pervasive on the majority of the sites, seven of the 10 Web sites contained food marketing. The products marketed were primarily candy, cereal, quick serve restaurants, and snacks. Candystand.com, a food product site, contained a significantly greater amount of food marketing than the other popular children's Web sites. Because the foods marketed to children are not consistent with a healthful diet, nutrition professionals should consider joining advocacy groups to pressure industry to reduce online food marketing directed at youth.

Computational Prediction of Protein Epsilon Lysine Acetylation Sites Based on a Feature Selection Method.

PubMed

Gao, JianZhao; Tao, Xue-Wen; Zhao, Jia; Feng, Yuan-Ming; Cai, Yu-Dong; Zhang, Ning

2017-01-01

Lysine acetylation, as one type of post-translational modifications (PTM), plays key roles in cellular regulations and can be involved in a variety of human diseases. However, it is often high-cost and time-consuming to use traditional experimental approaches to identify the lysine acetylation sites. Therefore, effective computational methods should be developed to predict the acetylation sites. In this study, we developed a position-specific method for epsilon lysine acetylation site prediction. Sequences of acetylated proteins were retrieved from the UniProt database. Various kinds of features such as position specific scoring matrix (PSSM), amino acid factors (AAF), and disorders were incorporated. A feature selection method based on mRMR (Maximum Relevance Minimum Redundancy) and IFS (Incremental Feature Selection) was employed. Finally, 319 optimal features were selected from total 541 features. Using the 319 optimal features to encode peptides, a predictor was constructed based on dagging. As a result, an accuracy of 69.56% with MCC of 0.2792 was achieved. We analyzed the optimal features, which suggested some important factors determining the lysine acetylation sites. We developed a position-specific method for epsilon lysine acetylation site prediction. A set of optimal features was selected. Analysis of the optimal features provided insights into the mechanism of lysine acetylation sites, providing guidance of experimental validation. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Cultural Resources Reconnaissance Along the Cheyenne River Arm of Lake Oahe in Dewey, Haakon, Stanley, and Ziebach Counties, South Dakota. Volume 1. Main Report

DTIC Science & Technology

1988-03-01

of site 39ST282................................227 39 Plan of site 39ST283................................230 40 Detailed plans of Features 1 and 2...268 53 Plan of site 39DW64 .............................. 272 54 Plan of Feature 1, site 39DW64 ................... 273 55 Plan of site 39DW65...facing E ........................... 228 46 Site 39ST283, facing NE .......................... 232 47 Detail of Feature 1, site 39ST283, facing NW

Use of high-resolution geophysical and geotechnical techniques for artificial reef site selection, west Cameron planning area, offshore Louisiana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pope, D.L.; Wagner, J.B.

1988-09-01

Before siting oil and gas platforms on the sea floor as artificial reefs offshore Louisiana, potentially hazardous and unstable geologic conditions must be identified and evaluated to assess their possible impacts on platform stability. Geologic and man-made features can be identified and assessed from high-resolution geophysical techniques (3.5-7.0 kHz echograms, single-channel seismic, and side-scan sonar). Such features include faults, diapirs, scarps, channels, gas seeps, irregular sea floor topography, mass wasting deposits (slumps, slides, and debris flows), pipelines, and other subsea marine equipment. Geotechnical techniques are utilized to determine lithologic and physical properties of the sediments for correlation with the geophysicalmore » data. These techniques are used to develop a series of geologic maps, cross sections, and pipeline and platform-location maps. Construction of echo-character maps from 3.5-kHz data provides an analysis of near-bottom sedimentation processes (turbidity currents and debris flows).« less

A multicenter tractography study of deep white matter tracts in bipolar I disorder: psychotic features and interhemispheric disconnectivity.

PubMed

Sarrazin, Samuel; Poupon, Cyril; Linke, Julia; Wessa, Michèle; Phillips, Mary; Delavest, Marine; Versace, Amelia; Almeida, Jorge; Guevara, Pamela; Duclap, Delphine; Duchesnay, Edouard; Mangin, Jean-François; Le Dudal, Katia; Daban, Claire; Hamdani, Nora; D'Albis, Marc-Antoine; Leboyer, Marion; Houenou, Josselin

2014-04-01

Tractography studies investigating white matter (WM) abnormalities in patients with bipolar disorder have yielded heterogeneous results owing to small sample sizes. The small size limits their generalizability, a critical issue for neuroimaging studies of biomarkers of bipolar I disorder (BPI). To study WM abnormalities using whole-brain tractography in a large international multicenter sample of BPI patients and to compare these alterations between patients with or without a history of psychotic features during mood episodes. A cross-sectional, multicenter, international, Q-ball imaging tractography study comparing 118 BPI patients and 86 healthy control individuals. In addition, among the patient group, we compared those with and without a history of psychotic features. University hospitals in France, Germany, and the United States contributed participants. Participants underwent assessment using the Diagnostic Interview for Genetic Studies at the French sites or the Structured Clinical Interview for DSM-IV at the German and US sites. Diffusion-weighted magnetic resonance images were acquired using the same acquisition parameters and scanning hardware at each site. We reconstructed 22 known deep WM tracts using Q-ball imaging tractography and an automatized segmentation technique. Generalized fractional anisotropy values along each reconstructed WM tract. Compared with controls, BPI patients had significant reductions in mean generalized fractional anisotropy values along the body and the splenium of the corpus callosum, the left cingulum, and the anterior part of the left arcuate fasciculus when controlling for age, sex, and acquisition site (corrected for multiple testing). Patients with a history of psychotic features had a lower mean generalized fractional anisotropy value than those without along the body of the corpus callosum (corrected for multiple testing). In this multicenter sample, BPI patients had reduced WM integrity in interhemispheric, limbic, and arcuate WM tracts. Interhemispheric pathways are more disrupted in patients with than in those without psychotic symptoms. Together these results highlight the existence of an anatomic disconnectivity in BPI and further underscore a role for interhemispheric disconnectivity in the pathophysiological features of psychosis in BPI.

Liquid rocket booster integration study. Volume 3, part 1: Study products

NASA Technical Reports Server (NTRS)

1988-01-01

The impacts of introducing liquid rocket booster engines (LRB) into the Space Transportation System (STS)/Kennedy Space Center (KSC) launch environment are identified and evaluated. Proposed ground systems configurations are presented along with a launch site requirements summary. Prelaunch processing scenarios are described and the required facility modifications and new facility requirements are analyzed. Flight vehicle design recommendations to enhance launch processing are discussed. Processing approaches to integrate LRB with existing STS launch operations are evaluated. The key features and significance of launch site transition to a new STS configuration in parallel with ongoing launch activities are enumerated. This volume is part one of the study products section of the five volume series.

Inland area contingency plan and maps for Pennsylvania (on CD-ROM). Data file

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1996-12-01

EPA Region III has assembled on this CD a multitude of environmental data, in both visual and textual formats. While targeted for Facility Response Planning under the Oil Pollution Act of 1990, this information will prove helpful to anyone in the environmental arena. Specifically, the CD will aid contingency planning and emergency response personnel. Combining innovative GIS technology with EPA`s state-specific data allows you to display maps, find and identify map features, look at tabular information about map features, and print out maps. The CD was designed to be easy to use and incorporates example maps as well as helpmore » sections describing the use of the environmental data on the CD, and introduces you to the IACP Viewer and its capabilities. These help features will make it easy for you to conduct analysis, produce maps, and browse the IACP Plan. The IACP data are included in two formats: shapefiles, which can be viewed with the IACP Viewer or ESRI`s ArcView software (Version 2.1 or higher), and ARC/INFO export files, which can be imported into ARC/INFO or converted to other GIS data formats. Point Data Sources: Sensitive Areas, Surface Drinking Water Intakes, Groundwater Intakes, Groundwater Supply Facilities, NPL (National Priority List) Sites, FRP (Facility Response Plan) Facilities, NPDES (National Pollutant Discharge Elimination System) Facilities, Hospitals, RCRA (Resource Conservation and Recovery Act) Sites, TRI (Toxic Release Inventory) Sites, CERCLA (Comprehensive Environmental Response, Compensation, and Liability Act) Sites Line Data Sources: TIGER Roads, TIGER Railroads, TIGER Hydrography, Pipelines Polygon Data Sources: State Boundaries, County Boundaries, Watershed Boundaries (8-digit HUC), TIGER Hydrography, Public Lands, Populated Places, IACP Boundaries, Coast Guard Boundaries, Forest Types, US Congressional Districts, One-half Mile Buffer of Surface Drinking Water Intakes.« less

Inland area contingency plan and maps for Virginia (on CD-ROM). Data file

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1996-12-01

EPA Region III has assembled on this CD a multitude of environmental data, in both visual and textual formats. While targeted for Facility Response Planning under the Oil Pollution Act of 1990, this information will prove helpful to anyone in the environmental arena. Specifically, the CD will aid contingency planning and emergency response personnel. Combining innovative GIS technology with EPA`s state-specific data allows you to display maps, find and identify map features, look at tabular information about map features, and print out maps. The CD was designed to be easy to use and incorporates example maps as well as helpmore » sections describing the use of the environmental data on the CD, and introduces you to the IACP Viewer and its capabilities. These help features will make it easy for you to conduct analysis, produce maps, and browse the IACP Plan. The IACP data are included in two formats: shapefiles, which can be viewed with the IACP Viewer or ESRI`s ArcView software (Version 2.1 or higher), and ARC/INFO export files, which can be imported into ARC/INFO or converted to other GIS data formats. Point Data Sources: Sensitive Areas, Surface Drinking Water Intakes, Groundwater Intakes, Groundwater Supply Facilities, NPL (National Priority List) Sites, FRP (Facility Response Plan) Facilities, NPDES (National Pollutant Discharge Elimination System) Facilities, Hospitals, RCRA (Resource Conservation and Recovery Act) Sites, TRI (Toxic Release Inventory) Sites, CERCLA (Comprehensive Environmental Response, Compensation, and Liability Act) Sites Line Data Sources: TIGER Roads, TIGER Railroads, TIGER Hydrography, Pipelines Polygon Data Sources: State Boundaries, County Boundaries, Watershed Boundaries (8-digit HUC), TIGER Hydrography, Public Lands, Populated Places, IACP Boundaries, Coast Guard Boundaries, Forest Types, US Congressional Districts, One-half Mile Buffer of Surface Drinking Water Intakes.« less

At the Crossroads: Does the Configuration of Roadside Vegetation Affect Woodland Bird Communities in Rural Landscapes?

PubMed Central

Hall, Mark; Nimmo, Dale; Bennett, Andrew F.

2016-01-01

In agricultural regions worldwide, linear networks of vegetation such as hedges, fencerows and live fences provide habitat for plant and animal species in heavily modified landscapes. In Australia, networks of remnant native vegetation along roadsides are a distinctive feature of many rural landscapes. Here, we investigated the richness and composition of woodland-dependent bird communities in networks of eucalypt woodland vegetation along roadsides, in an agricultural region in which >80% of native woodland and forest vegetation has been cleared. We stratified sites in a) cross sections and b) linear strips of roadside vegetation, to test the influence on woodland birds of site location and configuration in the linear network (the ‘intersection effect’). We also examined the influence of tree size at the site, the amount of wooded vegetation surrounding the site, and the abundance of an aggressive native species, the noisy miner Manorina melanocephala. Birds were surveyed at 26 pairs of sites (cross section or linear strip) on four occasions. A total of 66 species was recorded, including 35 woodland species. The richness of woodland bird species was influenced by site configuration, with more species present at cross sections, particularly those with larger trees (>30 cm diameter). However, the strongest influence on species richness was the relative abundance of the noisy miner. The richness of woodland birds at sites where noisy miners were abundant was ~20% of that where miners were absent. These results recognise the value of networks of roadside vegetation as habitat for woodland birds in depleted agricultural landscapes; but highlight that this value is not realised for much of this vast vegetation network because of the dominance of the noisy miner. Nevertheless, roadside vegetation is particularly important where the configuration of networks create nodes that facilitate movement. Globally, the protection, conservation and restoration of such linear networks has an important influence on the persistence of biota within human-dominated landscapes. PMID:27183227

At the Crossroads: Does the Configuration of Roadside Vegetation Affect Woodland Bird Communities in Rural Landscapes?

PubMed

Hall, Mark; Nimmo, Dale; Bennett, Andrew F

2016-01-01

In agricultural regions worldwide, linear networks of vegetation such as hedges, fencerows and live fences provide habitat for plant and animal species in heavily modified landscapes. In Australia, networks of remnant native vegetation along roadsides are a distinctive feature of many rural landscapes. Here, we investigated the richness and composition of woodland-dependent bird communities in networks of eucalypt woodland vegetation along roadsides, in an agricultural region in which >80% of native woodland and forest vegetation has been cleared. We stratified sites in a) cross sections and b) linear strips of roadside vegetation, to test the influence on woodland birds of site location and configuration in the linear network (the 'intersection effect'). We also examined the influence of tree size at the site, the amount of wooded vegetation surrounding the site, and the abundance of an aggressive native species, the noisy miner Manorina melanocephala. Birds were surveyed at 26 pairs of sites (cross section or linear strip) on four occasions. A total of 66 species was recorded, including 35 woodland species. The richness of woodland bird species was influenced by site configuration, with more species present at cross sections, particularly those with larger trees (>30 cm diameter). However, the strongest influence on species richness was the relative abundance of the noisy miner. The richness of woodland birds at sites where noisy miners were abundant was ~20% of that where miners were absent. These results recognise the value of networks of roadside vegetation as habitat for woodland birds in depleted agricultural landscapes; but highlight that this value is not realised for much of this vast vegetation network because of the dominance of the noisy miner. Nevertheless, roadside vegetation is particularly important where the configuration of networks create nodes that facilitate movement. Globally, the protection, conservation and restoration of such linear networks has an important influence on the persistence of biota within human-dominated landscapes.

Single-vehicle crashes along rural mountainous highways in Malaysia: An application of random parameters negative binomial model.

PubMed

Rusli, Rusdi; Haque, Md Mazharul; King, Mark; Voon, Wong Shaw

2017-05-01

Mountainous highways generally associate with complex driving environment because of constrained road geometries, limited cross-section elements, inappropriate roadside features, and adverse weather conditions. As a result, single-vehicle (SV) crashes are overrepresented along mountainous roads, particularly in developing countries, but little attention is known about the roadway geometric, traffic and weather factors contributing to these SV crashes. As such, the main objective of the present study is to investigate SV crashes using detailed data obtained from a rigorous site survey and existing databases. The final dataset included a total of 56 variables representing road geometries including horizontal and vertical alignment, traffic characteristics, real-time weather condition, cross-sectional elements, roadside features, and spatial characteristics. To account for structured heterogeneities resulting from multiple observations within a site and other unobserved heterogeneities, the study applied a random parameters negative binomial model. Results suggest that rainfall during the crash is positively associated with SV crashes, but real-time visibility is negatively associated. The presence of a road shoulder, particularly a bitumen shoulder or wider shoulders, along mountainous highways is associated with less SV crashes. While speeding along downgrade slopes increases the likelihood of SV crashes, proper delineation decreases the likelihood. Findings of this study have significant implications for designing safer highways in mountainous areas, particularly in the context of a developing country. Copyright © 2017 Elsevier Ltd. All rights reserved.

Prediction of lysine glutarylation sites by maximum relevance minimum redundancy feature selection.

PubMed

Ju, Zhe; He, Jian-Jun

2018-06-01

Lysine glutarylation is new type of protein acylation modification in both prokaryotes and eukaryotes. To better understand the molecular mechanism of glutarylation, it is important to identify glutarylated substrates and their corresponding glutarylation sites accurately. In this study, a novel bioinformatics tool named GlutPred is developed to predict glutarylation sites by using multiple feature extraction and maximum relevance minimum redundancy feature selection. On the one hand, amino acid factors, binary encoding, and the composition of k-spaced amino acid pairs features are incorporated to encode glutarylation sites. And the maximum relevance minimum redundancy method and the incremental feature selection algorithm are adopted to remove the redundant features. On the other hand, a biased support vector machine algorithm is used to handle the imbalanced problem in glutarylation sites training dataset. As illustrated by 10-fold cross-validation, the performance of GlutPred achieves a satisfactory performance with a Sensitivity of 64.80%, a Specificity of 76.60%, an Accuracy of 74.90% and a Matthew's correlation coefficient of 0.3194. Feature analysis shows that some k-spaced amino acid pair features play the most important roles in the prediction of glutarylation sites. The conclusions derived from this study might provide some clues for understanding the molecular mechanisms of glutarylation. Copyright © 2018 Elsevier Inc. All rights reserved.

Ultrafast Phase Mapping of Thin-Sections from An Apollo 16 Drive Tube - a New Visualisation of Lunar Regolith

NASA Technical Reports Server (NTRS)

Botha, Pieter; Butcher, Alan R.; Horsch, Hana; Rickman, Doug; Wentworth, Susan J.; Schrader, Christian M.; Stoeser, Doug; Benedictus, Aukje; Gottlieb, Paul; McKay, David

2008-01-01

Polished thin-sections of samples extracted from Apollo drive tubes provide unique insights into the structure of the Moon's regolith at various landing sites. In particular, they allow the mineralogy and texture of the regolith to be studied as a function of depth. Much has been written about such thin-sections based on optical, SEM and EPMA studies, in terms of their essential petrographic features, but there has been little attempt to quantify these aspects from a spatial perspective. In this study, we report the findings of experimental analysis of two thin-sections (64002, 6019, depth range 5.0 - 8.0 cm & 64001, 6031, depth range 50.0 - 53.1 cm), from a single Apollo 16 drive tube using QEMSCAN . A key feature of the method is phase identification by ultrafast energy dispersive x-ray mapping on a pixel-by-pixel basis. By selecting pixel resolutions ranging from 1 - 5 microns, typically 8,500,000 individual measurement points can be collected on a thin-section. The results we present include false colour digital images of both thin-sections. From these images, information such as phase proportions (major, minor and trace phases), particle textures, packing densities, and particle geometries, has been quantified. Parameters such as porosity and average phase density, which are of geomechanical interest, can also be calculated automatically. This study is part of an on-going investigation into spatial variation of lunar regolith and NASA's ISRU Lunar Simulant Development Project.

[Research progress and trend on grassland agroecology].

PubMed

Ren, Jizhou; Li, Xianglin; Hou, Fujiang

2002-08-01

The connotation, progress, research frontiers and developmental trend of grassland agroecology are discussed in this paper. The interface theory, structure and function, coupling and discordance, and health assessment of grassland agroecosystems were recognized as the four research frontiers of the discipline. There exist three primary interfaces in a grassland agroecosystem, i.e., vegetation-site, grassland-animal and production-management. Research into a series of the ecological processes that occurred at these interfaces is the key to revealing the features of the system behavior. There are four sections in a grassland agroecosystem, i.e., pre-plant, plant, animal and post-biotic sections. System coupling and discordance are the two important concepts to describe interactions among the production sections. System coupling among the sections can lead to system improvement by exerting the potential of system capacity. Health of an ecosystem is a reflection of its structure and function, and health assessment is a measurement of its orderliness and service value.

Solitary fibrous tumour of the cheek: An unusual presentation of a rare soft tissue tumour

PubMed Central

Jones, JL; Jones, AV; Drage, NA; Bhatia, S; Hourihan, MD

2014-01-01

This case report discusses the unusual presentation and ultrasound features of a solitary fibrous tumour of the face. Solitary fibrous tumour is an uncommon form of soft tissue tumour which, although seen predominantly within the lung pleura, can occur throughout the body in sites such as the peritoneum, mediastinum and head and neck. Ultrasound is an excellent imaging modality in the assessment of soft tissue masses in the head and neck. The ultrasound features demonstrated by this example of solitary fibrous tumour are reviewed. This report also highlights that ultrasound alone is ultimately limited in reaching a definitive diagnosis. The roles of other investigations such as ultrasound-guided biopsy and cross-sectional imaging are discussed. PMID:27433225

Site Features

EPA Pesticide Factsheets

This dataset consists of various site features from multiple Superfund sites in U.S. EPA Region 8. These data were acquired from multiple sources at different times and were combined into one region-wide layer.

Security alarm communication and display systems development

DOE Office of Scientific and Technical Information (OSTI.GOV)

Waddoups, I.G.

1990-01-01

Sandia National Laboratories has developed a variety of alarm communication and display systems for a broad spectrum of users. This paper will briefly describe the latest systems developed for the Department of Energy (DOE), the Department of Defense (DoD), and the Department of State (DOS) applications. Applications covered will vary from relatively small facilities to large complex sites. Ongoing system developments will also be discussed. The concluding section will summarize the practical, implementable state-of-the-art features available in new systems. 6 figs.

Improved coordinates of features in the vicinity of the Viking lander site on Mars

NASA Technical Reports Server (NTRS)

Davies, M. E.; Dole, S. H.

1980-01-01

The measurement of longitude of the Viking 1 landing site and the accuracy of the coordinates of features in the area around the landing site are discussed. The longitude must be measured photogrammatically from the small crater, Airy 0, which defines the 0 deg meridian on Mars. The computer program, GIANT, which was used to perform the analytical triangulations, and the photogrammetric computation of the longitude of the Viking 1 lander site are described. Improved coordinates of features in the vicinity of the Viking 1 lander site are presented.

Exploring the Extreme Universe! (2nd Edition)

NASA Technical Reports Server (NTRS)

White, Nicholas E.

2002-01-01

A large array of web sites devoted to the science that the NASA Goddard Space Flight Center Laboratory for High Energy Astrophysics (LHEA) studies have been frozen in time and included on this CD. Featured are five of our 'Understanding the Extreme Universe' sites, which offer explanations about cosmic ray, gamma ray, and X-ray science and satellites, as well as cosmic distances. They also include images and engaging activities that are great for helping both children and adults to learn more about science and basic physical principles. The 'Missions That Take Us There' section contains web sites on the satellite, balloon-borne, International Space Station, and rocket missions in our Laboratory that study X-rays, gamma rays, and cosmic rays. There are also two multi-mission sites and an experiment that measures Earth's UV light in preparation for a future cosmic ray mission. Most of the sites on this CD contain high-resolution images that are great for scientific presentations, study, or just your own enjoyment. This CD shows our web sites as they existed in April of 2001. We have made sure to include the WWW address for every site, so you will know where to go to access the most current versions of them.

Upheaval Dome, An Analogue Site for Gale Center

NASA Technical Reports Server (NTRS)

Conrad, P. G.; Eignebrode, J. L.

2011-01-01

We propose Upheaval Dome in southeastern Utah as an impact analogue site on Earth to Mars Science Laboratory candidate landing site Gale Crater. The genesis of Upheaval Dome was a mystery for some time--originally thought to be a salt dome. The 5 km crater was discovered to possess shocked quartz and other shock metamorphic features just a few years ago, compelling evidence that the crater was formed by impact, although the structural geology caused Shoemaker and Herkenhoff to speculate an impact origin some 25 years earlier. The lithology of the crater is sedimentary. The oldest rocks are exposed in the center of the dome, upper Permian sandstones, and progressively younger units are well exposed moving outward from the center. These are Triassic sandstones, siltstones and shales, which are intruded by clastic dikes. There are also other clay-rich strata down section, as is the case with Gale Crater. There is significant deformation in the center of the crater, with folding and steeply tilted beds, unlike the surrounding Canyonlands area, which is relatively undeformed. The rock units are well exposed at Upheaval Dome, and there are shatter cones, impactite fragments, shocked quartz grains and melt rocks present. The mineral shock features suggest that the grains were subjected to dynamic pressures> 10 GPa.

Preferred features of urban parks and forests

Treesearch

Herbert W. Schroeder

1982-01-01

To make the most efficient use of scarce recreation resources, urban forest managers need to know what features of recreation sites are the most important for creating high-quality recreation environments. In this study, observers viewed photographs of urban forest sites in the Chicago area and described the features of the sites that they liked and disliked. Natural...

Empirical evaluation of cross-site reproducibility in radiomic features for characterizing prostate MRI

NASA Astrophysics Data System (ADS)

Chirra, Prathyush; Leo, Patrick; Yim, Michael; Bloch, B. Nicolas; Rastinehad, Ardeshir R.; Purysko, Andrei; Rosen, Mark; Madabhushi, Anant; Viswanath, Satish

2018-02-01

The recent advent of radiomics has enabled the development of prognostic and predictive tools which use routine imaging, but a key question that still remains is how reproducible these features may be across multiple sites and scanners. This is especially relevant in the context of MRI data, where signal intensity values lack tissue specific, quantitative meaning, as well as being dependent on acquisition parameters (magnetic field strength, image resolution, type of receiver coil). In this paper we present the first empirical study of the reproducibility of 5 different radiomic feature families in a multi-site setting; specifically, for characterizing prostate MRI appearance. Our cohort comprised 147 patient T2w MRI datasets from 4 different sites, all of which were first pre-processed to correct acquisition-related for artifacts such as bias field, differing voxel resolutions, as well as intensity drift (non-standardness). 406 3D voxel wise radiomic features were extracted and evaluated in a cross-site setting to determine how reproducible they were within a relatively homogeneous non-tumor tissue region; using 2 different measures of reproducibility: Multivariate Coefficient of Variation and Instability Score. Our results demonstrated that Haralick features were most reproducible between all 4 sites. By comparison, Laws features were among the least reproducible between sites, as well as performing highly variably across their entire parameter space. Similarly, the Gabor feature family demonstrated good cross-site reproducibility, but for certain parameter combinations alone. These trends indicate that despite extensive pre-processing, only a subset of radiomic features and associated parameters may be reproducible enough for use within radiomics-based machine learning classifier schemes.

Remission and recovery associated with lurasidone in the treatment of major depressive disorder with subthreshold hypomanic symptoms (mixed features): post-hoc analysis of a randomized, placebo-controlled study with longer-term extension.

PubMed

Goldberg, Joseph F; Ng-Mak, Daisy; Siu, Cynthia; Chuang, Chien-Chia; Rajagopalan, Krithika; Loebel, Antony

2017-04-01

This post-hoc analysis assessed rates of symptomatic and functional remission, as well as recovery (combination of symptomatic and functional remission), in patients treated with lurasidone for major depressive disorder (MDD) associated with subthreshold hypomanic symptoms (mixed features). Patients with MDD plus two or three manic symptoms (defined as per the DSM-5 mixed-features specifier) were randomly assigned to flexible-dose lurasidone 20-60 mg/day (n=109) or placebo (n=100) for 6 weeks, followed by a 3-month open-label, flexible-dose extension study for U.S. sites only (n=48). Cross-sectional recovery was defined as the presence of both symptomatic remission (Montgomery-Åsberg Depression Rating Scale score ≤ 12) and functional remission (all Sheehan Disability Scale [SDS] domain scores ≤3) at week 6, and at both months 1 and 3 of the extension study ("sustained recovery"). A significantly higher proportion of lurasidone-treated patients (31.3%) achieved recovery (assessed cross-sectionally) compared to placebo (12.2%, p=0.002) at week 6. The number of manic symptoms at baseline moderated the effect size for attaining cross-sectional recovery for lurasidone treatment (vs. placebo) (p=0.028). Sustained recovery rates were higher in patients initially treated with lurasidone (20.8%) versus placebo (12.5%). In this post-hoc analysis of a placebo-controlled study with open-label extension that involved patients with MDD and mixed features, lurasidone was found to significantly improve the rate of recovery at 6 weeks (vs. placebo) that was sustained at month 3 of the extension study. The presence of two (as opposed to three) manic symptoms moderated recovery at the acute study endpoint.

Overview of research on water, gas, and radionuclide transport at the Amargosa Desert Research Site, Nevada: A section in U.S. Geological Survey Toxic Substances Hydrology Program: Proceedings of the technical meeting, Charleston, South Carolina, March 8-12, 1999: Volume 3 (Part C) (WRI 99-4018C)

USGS Publications Warehouse

Andraski, Brian J.; Stonestrom, David A.; Morganwalp, David W.; Buxton, Herbert T.

1999-01-01

Studies at the U.S. Geological Survey Amargosa Desert Research Site have focused on characterizing factors and processes that control transport and fate of contaminants in arid environments. This paper summarizes research results that have been published through 1998. Results have improved understanding of water and gas movement through a thick unsaturated zone, including the degree to which features of the natural unsaturated-flow system can be altered by installation of a waste-disposal facility. The study of radioactive-contaminant transport at the site is at an early stage. Field data measured in association with this new component of research have generated speculation regarding the exact mechanisms that control tritium transport in arid unsaturated zones.

Development of an online tool for public health: the European Public Health Law Network.

PubMed

Basak, P

2011-09-01

The European Public Health Law Network was established in 2007 as part of the European Union (EU) co-funded Public Health Law Flu project. The aims of the website consisted of designing an interactive network of specialist information and encouraging an exchange of expertise amongst members. The website sought to appeal to academics, public health professionals and lawyers. The Public Health Law Flu project team designed and managed the website. Registered network members were recruited through publicity, advertising and word of mouth. Details of the network were sent to health organizations and universities throughout Europe. Corresponding website links attracted many new visitors. Publications, news, events and a pandemic glossary became popular features on the site. Although the website initially focused only on pandemic diseases it has grown into a multidisciplinary website covering a range of public health law topics. The network contains over 700 publications divided into 28 public health law categories. News, events, front page content, legislation and the francophone section are updated on a regular basis. Since 2007 the website has received over 15,000 views from 156 countries. Newsletter subscribers have risen to 304. There are now 723 followers on the associated Twitter site. The European Public Health Law Network has been a successful and innovative site in the area of public health law. Interest in the site continues to grow. Future funding can contribute to a bigger site with interactive features and pages in a wider variety of languages to attract a wider global audience. Copyright © 2011 The Royal Society for Public Health. Published by Elsevier Ltd. All rights reserved.

Effect of horizontal curves on urban arterial crashes.

PubMed

Banihashemi, Mohamadreza

2016-10-01

The crash prediction models of the Highway Safety Manual (HSM), 2010 estimate the expected number of crashes for different facility types. Models in Part C Chapter 12 of the first edition of the HSM include crash prediction models for divided and undivided urban arterials. Each of the HSM crash prediction models for highway segments is comprised of a "Safety Performance Function," a function of AADT and segment length, plus, a series of "Crash Modification Factors" (CMFs). The SPF estimates the expected number of crashes for the site if the site features are of base condition. The effects of the other features of the site, if their values are different from base condition, are carried out through use of CMFs. The existing models for urban arterials do not have any CMF for horizontal curvature. The goal of this research is to investigate if the horizontal alignment has any significant effect on crashes on any of these types of facilities and if so, to develop a CMF for this feature. Washington State cross sectional data from the Highway Safety Information System (HSIS), 2014 was used in this research. Data from 2007 to 2009 was used to conduct the investigation. The 2010 data was used to validate the results. As the results showed, the horizontal curvature has significant safety effect on two-lane undivided urban arterials with speed limits of 35 mph and higher and using a CMF for horizontal curvature in the crash prediction model of this type of facility improves the prediction of crashes significantly, for both tangent and curve segments. Copyright © 2016 Elsevier Ltd. All rights reserved.

Evacuation dynamic and exit optimization of a supermarket based on particle swarm optimization

NASA Astrophysics Data System (ADS)

Li, Lin; Yu, Zhonghai; Chen, Yang

2014-12-01

A modified particle swarm optimization algorithm is proposed in this paper to investigate the dynamic of pedestrian evacuation from a fire in a public building-a supermarket with multiple exits and configurations of counters. Two distinctive evacuation behaviours featured by the shortest-path strategy and the following-up strategy are simulated in the model, accounting for different categories of age and sex of the pedestrians along with the impact of the fire, including gases, heat and smoke. To examine the relationship among the progress of the overall evacuation and the layout and configuration of the site, a series of simulations are conducted in various settings: without a fire and with a fire at different locations. Those experiments reveal a general pattern of two-phase evacuation, i.e., a steep section and a flat section, in addition to the impact of the presence of multiple exits on the evacuation along with the geographic locations of the exits. For the study site, our simulations indicated the deficiency of the configuration and the current layout of this site in the process of evacuation and verified the availability of proposed solutions to resolve the deficiency. More specifically, for improvement of the effectiveness of the evacuation from the site, adding an exit between Exit 6 and Exit 7 and expanding the corridor at the right side of Exit 7 would significantly reduce the evacuation time.

Past Project Expo Sites

EPA Pesticide Factsheets

This page provides information for Project Expo sites that were featured at the LMOP Conferences in 2013 and 2014. Project Expo sites were featured as being interested in identifying project partners for the development of an LFG energy project.

A cross-site comparison of methods used for hydrogeologic characterization of the Galena-Platteville aquifer in Illinois and Wisconsin, with examples from selected Superfund sites

USGS Publications Warehouse

Kay, Robert T.; Mills, Patrick C.; Dunning, Charles P.; Yeskis, Douglas J.; Ursic, James R.; Vendl, Mark

2004-01-01

The effectiveness of 28 methods used to characterize the fractured Galena-Platteville aquifer at eight sites in northern Illinois and Wisconsin is evaluated. Analysis of government databases, previous investigations, topographic maps, aerial photographs, and outcrops was essential to understanding the hydrogeology in the area to be investigated. The effectiveness of surface-geophysical methods depended on site geology. Lithologic logging provided essential information for site characterization. Cores were used for stratigraphy and geotechnical analysis. Natural-gamma logging helped identify the effect of lithology on the location of secondary- permeability features. Caliper logging identified large secondary-permeability features. Neutron logs identified trends in matrix porosity. Acoustic-televiewer logs identified numerous secondary-permeability features and their orientation. Borehole-camera logs also identified a number of secondary-permeability features. Borehole ground-penetrating radar identified lithologic and secondary-permeability features. However, the accuracy and completeness of this method is uncertain. Single-point-resistance, density, and normal resistivity logs were of limited use. Water-level and water-quality data identified flow directions and indicated the horizontal and vertical distribution of aquifer permeability and the depth of the permeable features. Temperature, spontaneous potential, and fluid-resistivity logging identified few secondary-permeability features at some sites and several features at others. Flowmeter logging was the most effective geophysical method for characterizing secondary-permeability features. Aquifer tests provided insight into the permeability distribution, identified hydraulically interconnected features, the presence of heterogeneity and anisotropy, and determined effective porosity. Aquifer heterogeneity prevented calculation of accurate hydraulic properties from some tests. Different methods, such as flowmeter logging and slug testing, occasionally produced different interpretations. Aquifer characterization improved with an increase in the number of data points, the period of data collection, and the number of methods used.

PrAS: Prediction of amidation sites using multiple feature extraction.

PubMed

Wang, Tong; Zheng, Wei; Wuyun, Qiqige; Wu, Zhenfeng; Ruan, Jishou; Hu, Gang; Gao, Jianzhao

2017-02-01

Amidation plays an important role in a variety of pathological processes and serious diseases like neural dysfunction and hypertension. However, identification of protein amidation sites through traditional experimental methods is time consuming and expensive. In this paper, we proposed a novel predictor for Prediction of Amidation Sites (PrAS), which is the first software package for academic users. The method incorporated four representative feature types, which are position-based features, physicochemical and biochemical properties features, predicted structure-based features and evolutionary information features. A novel feature selection method, positive contribution feature selection was proposed to optimize features. PrAS achieved AUC of 0.96, accuracy of 92.1%, sensitivity of 81.2%, specificity of 94.9% and MCC of 0.76 on the independent test set. PrAS is freely available at https://sourceforge.net/p/praspkg. Copyright © 2016 Elsevier Ltd. All rights reserved.

Predicting protein amidation sites by orchestrating amino acid sequence features

NASA Astrophysics Data System (ADS)

Zhao, Shuqiu; Yu, Hua; Gong, Xiujun

2017-08-01

Amidation is the fourth major category of post-translational modifications, which plays an important role in physiological and pathological processes. Identifying amidation sites can help us understanding the amidation and recognizing the original reason of many kinds of diseases. But the traditional experimental methods for predicting amidation sites are often time-consuming and expensive. In this study, we propose a computational method for predicting amidation sites by orchestrating amino acid sequence features. Three kinds of feature extraction methods are used to build a feature vector enabling to capture not only the physicochemical properties but also position related information of the amino acids. An extremely randomized trees algorithm is applied to choose the optimal features to remove redundancy and dependence among components of the feature vector by a supervised fashion. Finally the support vector machine classifier is used to label the amidation sites. When tested on an independent data set, it shows that the proposed method performs better than all the previous ones with the prediction accuracy of 0.962 at the Matthew's correlation coefficient of 0.89 and area under curve of 0.964.

SEAFLOOR MANIFESTATIONS OF GAS VENTING AND NEAR SEAFLOOR GAS HYDRATE OCCURRENCES

NASA Astrophysics Data System (ADS)

Paull, C. K.; Ussler, W.; Caress, D. W.; Thomas, H.; Lundsten, E.; Riedel, M.; Lapham, L.

2009-12-01

High-resolution multibeam bathymetry and chirp seismic profiles collected with an AUV complimented by ROV observations and sampling reveal the fine scale geomorphology and seafloor structures associated with gas venting and/or near subsurface gas hydrate accumulations along the Pacific North American continental margin. Sites from Santa Monica Basin, northern and southern Hydrate Ridge, Barkley Canyon, Bullseye Vent and three previously unexplored vent sites near Bullseye Vent have been recently investigated. The new AUV data allow the identification of features and seafloor textures that were previously undetected and reveal the impact of gas venting, gas hydrate development and related phenomena on the seafloor morphology. Distinct geomorphic characteristics are interpreted to represent different stages in the development and evolution of the seafloor in these areas. The more mature features include distinct (>10 m high) elevated features (e.g., Santa Monica Mounds and the Hydrate Ridge Pinnacle), widespread areas where methane-derived carbonates are exposed on the surrounding seafloor (e.g., both Hydrate Ridge sites, and an unnamed ridge north of Bullseye Vent), circular seafloor craters with diameters of 3 to 50 m that appear to be associated with missing sections of the original seafloor (e.g., Bullseye Vent, northern Hydrate Ridge, and an unnamed ridge north of Bullseye Vent). Smaller mound-like features (<10 m in diameter and 1-3 m higher than the surrounding seafloor occur at Barkley Canyon and a newly explored vent system called Spinnaker Vent 6 km NW of Bullseye vent. Solid lens of gas hydrate are occasionally exposed along fractures on the sides of these mounds and suggest that these are push-up features associated with gas hydrate growth within the near seafloor sediments. The existence of both extensive methane-derived carbonates and chemosynthetic biological communities characterized by Vesicomya clams and Lamellibrachia tubeworms (which are slow growing) indicate that methane venting has occurred for protracted periods of time at these sites. However, the youngest appearing features occur in a gulch ~1 km NE of Bullseye Vent. They are associated with more-subtle (2-3 m in diameter and ~0.5 m high) seafloor mounds, with their crests crossed with small cracks lined with white bacterial mats, lack exposed methane-derived carbonates, Vesicomya clams or Lamellibrachia tubeworms. ROV-collected vibracores (<1.5 cm long) obtained from these subtle mounds characteristically encountered a hard layer at 30-60 cm sub-bottom. Where this layer was penetrated, methane bubbles would spontaneously gush out the hole and continue to flow out for more than an hour. These observations suggest that these small mounds are young features which have considerable volumes of over-pressured gas trapped near the seafloor. Together these observations reveal the integrated effect that gas and/or gas hydrate occurrences can have on the seafloor. The existence of apparently over-pressured gas within ~1 m of the seafloor has intriguing implications as to the geo-hazard potential of such sites.

Estimating Douglas-fir site quality from aerial photographs.

Treesearch

Grover A. Choate

1961-01-01

This study investigated the feasibility of developing a technique for estimating site index of Douglas-fir in the Pacific Northwest, using aerial photos and topographic maps. Physiographic features were used as indicators of site index. Analysis showed that although most of the features were highly significant as criteria for predicting site index, they explained less...

Thin-section microscopy of decayed crystalline marble from the garden sculptures of Schoenbrunn Palace in Vienna

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weber, J.; Beseler, S.; Sterflinger, K.

2007-11-15

Sterzing marble, a crystalline white marble used in the late-Baroque garden sculptures of Schoenbrunn Palace in Vienna, was studied by means of thin-section and scanning electron microscopy in order to obtain a better understanding of its surface decay caused by atmospheric weathering. Following the classification of distinct phenomena of deterioration by visual on-site inspection, the microstructural features including surface erosion, micro-cracking, soiling, black crust formation, and microbiological infestation are exemplified by microscopical images and are briefly discussed. The results proved useful for evaluating and understanding the various types of marble decay for creating a safer basis for establishing the proceduralmore » principles aimed at conservation and maintenance of the sculptures.« less

Correlation between pairing initiation sites, recombination nodules and meiotic recombination in Sordaria macrospora.

PubMed

Zickler, D; Moreau, P J; Huynh, A D; Slezec, A M

1992-09-01

The decrease of meiotic exchanges (crossing over and conversion) in two mutants of Sordaria macrospora correlated strongly with a reduction of chiasmata and of both types of "recombination nodules." Serial section reconstruction electron microscopy was used to compare the synapsis pattern of meiotic prophase I in wild type and mutants. First, synapsis occurred but the number of synaptonemal complex initiation sites was reduced in both mutants. Second, this reduction was accompanied by, or resulted in, modifications of the pattern of synapsis. Genetic and synaptonemal complex maps were compared in three regions along one chromosome arm divided into well marked intervals. Reciprocal exchange frequencies and number of recombination nodules correlated in wild type in the three analyzed intervals, but disparity was found between the location of recombination nodules and exchanges in the mutants. Despite the twofold exchange decrease, sections of the genome such as the short arm of chromosome 2 and telomere regions were sheltered from nodule decrease and from pairing modifications. This indicated a certain amount of diversity in the control of these features and suggested that exchange frequency was dependent not only on the amount of effective pairing but also on the localization of the pairing sites, as revealed by the synaptonemal complex progression in the mutants.

Correlation between Pairing Initiation Sites, Recombination Nodules and Meiotic Recombination in Sordaria Macrospora

PubMed Central

Zickler, D.; Moreau, PJF.; Huynh, A. D.; Slezec, A. M.

1992-01-01

The decrease of meiotic exchanges (crossing over and conversion) in two mutants of Sordaria macrospora correlated strongly with a reduction of chiasmata and of both types of ``recombination nodules.'' Serial section reconstruction electron microscopy was used to compare the synapsis pattern of meiotic prophase I in wild type and mutants. First, synapsis occurred but the number of synaptonemal complex initiation sites was reduced in both mutants. Second, this reduction was accompanied by, or resulted in, modifications of the pattern of synapsis. Genetic and synaptonemal complex maps were compared in three regions along one chromosome arm divided into well marked intervals. Reciprocal exchange frequencies and number of recombination nodules correlated in wild type in the three analyzed intervals, but disparity was found between the location of recombination nodules and exchanges in the mutants. Despite the twofold exchange decrease, sections of the genome such as the short arm of chromosome 2 and telomere regions were sheltered from nodule decrease and from pairing modifications. This indicated a certain amount of diversity in the control of these features and suggested that exchange frequency was dependent not only on the amount of effective pairing but also on the localization of the pairing sites, as revealed by the synaptonemal complex progression in the mutants. PMID:1398050

Pattern analysis of nerve enlargement using ultrasonography in chronic inflammatory demyelinating polyneuropathy.

PubMed

Jang, Jae Hong; Cho, Charles S; Yang, Kyung-Sook; Seok, Hung Youl; Kim, Byung-Jo

2014-09-01

Focal nerve enlargement is a characteristic finding in chronic inflammatory demyelinating polyneuropathy (CIDP). We performed this study to assess the distribution of nerve enlargement through ultrasonographic examination of peripheral nerves and to correlate the ultrasonographic findings with clinical features. To compare the ultrasonographic features of 10 subjects with CIDP with those of 18 healthy controls, we bilaterally measured the cross-sectional areas (CSA) of the vagus, brachial plexus, musculocutaneous, median, ulnar, radial, sciatic, tibial, common peroneal, and sural nerves. We also analyzed correlations between CSAs and various clinical and electrophysiological features. Mean CSAs were significantly larger in CIDP patients than controls, especially at proximal and non-entrapment sites. CSAs were significantly correlated with muscle strength at initial presentation, but not at the time of ultrasonography. The CSAs of the median and ulnar nerves at the mid-forearm, tibial nerve at 7 cm proximal to the medial malleolus, and sural nerve correlated with the nerve conduction velocity of the corresponding region. Ultrasonography revealed widely distributed nerve enlargement, especially in proximal regions and non-entrapment sites, in patients with CIDP compared with healthy controls. Nerve enlargement correlated well with the electrophysiologic function of the nerve, but not current clinical status. Pattern analysis of nerve enlargement using ultrasonography is a supportive tool in the diagnosis of CIDP. Copyright © 2014 International Federation of Clinical Neurophysiology. Published by Elsevier Ireland Ltd. All rights reserved.

Environment of Mars, 1988

NASA Technical Reports Server (NTRS)

Kaplan, David I. (Compiler)

1988-01-01

A compilation of scientific knowledge about the planet Mars is provided. Information is divided into three categories: atmospheric data, surface data, and astrodynamic data. The discussion of atmospheric data includes the presentation of nine different models of the Mars atmosphere. Also discussed are Martian atmospheric constituents, winds, clouds, and solar irradiance. The great dust storms of Mars are presented. The section on Mars surface data provides an in-depth examination of the physical and chemical properties observed at the two Viking landing sites. Bulk densities, dielectric constants, and thermal inertias across the planet are then described and related back to those specific features found at the Viking landing sites. The astrodynamic materials provide the astronomical constants, time scales, and reference coordinate frames necessary to perform flightpath analysis, navigation design, and science observation design.

Inland area contingency plan and maps for Delaware, Maryland, West Virginia, District of Columbia (on CD-ROM). Data file

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1996-12-01

EPA Region III has assembled on this CD a multitude of environmental data, in both visual and textual formats. While targeted for Facility Response Planning under the Oil Pollution Act of 1990, this information will prove helpful to anyone in the environmental arena. Specifically, the CD will aid contingency planning and emergency response personnel. Combining innovative GIS technology with EPA`s state-specific data allows you to display maps, find and identify map features, look at tabular information about map features, and print out maps. The CD was designed to be easy to use and incorporates example maps as well as helpmore » sections describing the use of the environmental data on the CD, and introduces you to the IACP Viewer and its capabilities. These help features will make it easy for you to conduct analysis, produce maps, and browse the IACP Plan. The IACP data are included in two formats: shapefiles, which can be viewed with the IACP Viewer or ESRI`s ArcView software (Version 2.1 or higher), and ARC/INFO export files, which can be imported into ARC/INFO or converted to other GIS data formats. Point Data Sources: Sensitive Areas, Surface Drinking Water Intakes, Groundwater Intakes, Groundwater Supply Facilities, NPL (National Priority List) Sites, FRP (Facility Response Plan) Facilities, NPDES (National Pollutant Discharge Elimination System) Facilities, Hospitals, RCRA (Resource Conservation and Recovery Act) Sites, TRI (Toxic Release Inventory) Sites, CERCLA (Comprehensive Environmental Response, Compensation, and Liability Act) Sites Line Data Sources: TIGER Roads, TIGER Railroads, TIGER Hydrography, Pipelines Polygon Data Sources: State Boundaries, County Boundaries, Watershed Boundaries (8-digit HUC), TIGER Hydrography, Public Lands, Populated Places, IACP Boundaries, Coast Guard Boundaries, Forest Types, US Congressional Districts, One-half Mile Buffer of Surface Drinking Water Intakes.« less

Distribution and characteristics of gravelly soil liquefaction in the Wenchuan M s 8.0 earthquake

NASA Astrophysics Data System (ADS)

Cao, Zhenzhong; Hou, Longqing; Xu, Hongmei; Yuan, Xiaoming

2010-06-01

In this paper, a distribution map of gravelly soil liquefaction that was caused by the Wenchuan M s 8.0 earthquake in China is proposed based on a detailed field investigation and an analysis of geological soil profiles. The geological background of the earthquake disaster region is summarized by compiling geological cross sections and borehole logs. Meanwhile, four typical liquefied sites were selected to conduct sample drillings, dynamic penetration tests (DPT), and shear wave velocity tests, to understand the features of liquefied gravelly soil. One hundred and eighteen (118) liquefied sites were investigated shortly after the earthquake. The field investigation showed: (1) sandboils and waterspouts occurred extensively, involving thousands of miles of farmland, 120 villages, eight schools and five factories, which caused damage to some rural houses, schools, manufacturing facilities and wells, etc.; (2) the Chengdu plain is covered by a gravelly soil layer with a thickness of 0 m to 541 m according to the geological cross sections; (3) there were 80 gravelly soil liquefied sites in the Chengdu plain, shaped as five belt areas that varied from 20 km to 40 km in length, and about ten gravelly soil liquefied sites distributed within Mianyang area; and (4) the grain sizes of the sampled soil were relative larger than the ejected soil on the ground, thus the type of liquefied soil cannot be determined by the ejected soil. The gravelly soil liquefied sites are helpful in enriching the global database of gravelly soil liquefaction and developing a corresponding evaluation method in further research efforts.

36 CFR 67.2 - Definitions.

Code of Federal Regulations, 2011 CFR

2011-07-01

... structure encompasses the historic building and its site, landscape features, and environment, generally... means a building and its site and landscape features. Registered Historic District means any district...

36 CFR 67.2 - Definitions.

Code of Federal Regulations, 2013 CFR

2013-07-01

... structure encompasses the historic building and its site, landscape features, and environment, generally... means a building and its site and landscape features. Registered Historic District means any district...

36 CFR 67.2 - Definitions.

Code of Federal Regulations, 2012 CFR

2012-07-01

... structure encompasses the historic building and its site, landscape features, and environment, generally... means a building and its site and landscape features. Registered Historic District means any district...

36 CFR 67.2 - Definitions.

Code of Federal Regulations, 2014 CFR

2014-07-01

... structure encompasses the historic building and its site, landscape features, and environment, generally... means a building and its site and landscape features. Registered Historic District means any district...

10 CFR 100.10 - Factors to be considered when evaluating sites.

Code of Federal Regulations, 2013 CFR

2013-01-01

... reactor incorporates unique or unusual features having a significant bearing on the probability or consequences of accidental release of radioactive materials; (4) The safety features that are to be engineered... radioactive fission products. In addition, the site location and the engineered features included as...

10 CFR 100.10 - Factors to be considered when evaluating sites.

Code of Federal Regulations, 2012 CFR

2012-01-01

... reactor incorporates unique or unusual features having a significant bearing on the probability or consequences of accidental release of radioactive materials; (4) The safety features that are to be engineered... radioactive fission products. In addition, the site location and the engineered features included as...

10 CFR 100.10 - Factors to be considered when evaluating sites.

Code of Federal Regulations, 2014 CFR

2014-01-01

... reactor incorporates unique or unusual features having a significant bearing on the probability or consequences of accidental release of radioactive materials; (4) The safety features that are to be engineered... radioactive fission products. In addition, the site location and the engineered features included as...

77 FR 48550 - Technicolor Creative Services, Post Production Feature Mastering Division Including On-Site...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-14

... Services, Post Production Feature Mastering Division Including On-Site Leased Workers From Ajilon... Services, Post Production Feature Mastering Division, Hollywood, California (subject firm). The worker... the workers meet the eligibility requirements of the Trade Act of 1974. Conclusion After careful...

Distinctive Geomorphology of Gas Venting and Near Seafloor Gas Hydrate-Bearing sites

NASA Astrophysics Data System (ADS)

Paull, C. K.; Caress, D. W.; Lundsten, E.; Anderson, K.; Gwiazda, R.; McGann, M. L.; Edwards, B. D.; Riedel, M.; Herguera, J.

2012-12-01

High-resolution multibeam bathymetry and chirp seismic-reflection profiles collected with an Autonomous Underwater Vehicle (AUV) complimented by Remotely Operated Vehicle (ROV) observations and sampling reveal the fine scale geomorphology associated with gas venting and/or near subsurface gas hydrate accumulations along the Pacific North American continental margin (Santa Monica Basin, Hydrate Ridge, Eel River, Barkley Canyon, and Bullseye Vent) and along the transform faults in the Gulf of California. At the 1 m multibeam grid resolution of the new data, distinctive features and textures that are undetectable at lower resolution, show the impact of gas venting, gas hydrate development, and related phenomena on the seafloor morphology. Together a suite of geomorphic characteristics illustrates different stages in the development of seafloor gas venting systems. The more mature and/or impacted areas are associated with widespread exposures of methane-derived carbonates, which form broken and irregular seafloor pavements with karst-like voids in between the cemented blocks. These mature areas also contain elevated features >10 m high and circular seafloor craters with diameters of 3-50 m that appear to be associated with missing sections of the original seafloor. Smaller mound-like features (<10 m in diameter and 1-3 m higher than the surrounding seafloor) occur at multiple sites. Solid lenses of gas hydrate are occasionally exposed along fractures on the sides of these mounds and suggest that these are push-up features associated with gas hydrate growth within the near seafloor sediments. The youngest appearing features are associated with more-subtle (<3 m in diameter and ~0.5 m high) seafloor mounds, the crests of which are crossed with small cracks lined with white bacterial mats. ROV-collected (<1.5 m long) cores obtained from these subtle mounds encountered a hard layer at 30-60 cm sub-bottom. When this layer was penetrated, methane bubbles gushed out and continued to flow out for over an hour. These observations indicate that these small mounds are young features that trap considerable volumes of gas near the seafloor. Together these observations reveal the integrated effect that gas and/or gas hydrate occurrences can have on the seafloor. The existence of gaseous methane within ~1 m of the seafloor has intriguing implications as to the geo-hazard potential of such sites.

Formal Features of Cyberspace: Relationships between Web Page Complexity and Site Traffic.

ERIC Educational Resources Information Center

Bucy, Erik P.; Lang, Annie; Potter, Robert F.; Grabe, Maria Elizabeth

1999-01-01

Examines differences between the formal features of commercial versus noncommercial Web sites, and the relationship between Web page complexity and amount of traffic a site receives. Findings indicate that, although most pages in this stage of the Web's development remain technologically simple and noninteractive, there are significant…

Analysis and Prediction of Myristoylation Sites Using the mRMR Method, the IFS Method and an Extreme Learning Machine Algorithm.

PubMed

Wang, ShaoPeng; Zhang, Yu-Hang; Huang, GuoHua; Chen, Lei; Cai, Yu-Dong

2017-01-01

Myristoylation is an important hydrophobic post-translational modification that is covalently bound to the amino group of Gly residues on the N-terminus of proteins. The many diverse functions of myristoylation on proteins, such as membrane targeting, signal pathway regulation and apoptosis, are largely due to the lipid modification, whereas abnormal or irregular myristoylation on proteins can lead to several pathological changes in the cell. To better understand the function of myristoylated sites and to correctly identify them in protein sequences, this study conducted a novel computational investigation on identifying myristoylation sites in protein sequences. A training dataset with 196 positive and 84 negative peptide segments were obtained. Four types of features derived from the peptide segments following the myristoylation sites were used to specify myristoylatedand non-myristoylated sites. Then, feature selection methods including maximum relevance and minimum redundancy (mRMR), incremental feature selection (IFS), and a machine learning algorithm (extreme learning machine method) were adopted to extract optimal features for the algorithm to identify myristoylation sites in protein sequences, thereby building an optimal prediction model. As a result, 41 key features were extracted and used to build an optimal prediction model. The effectiveness of the optimal prediction model was further validated by its performance on a test dataset. Furthermore, detailed analyses were also performed on the extracted 41 features to gain insight into the mechanism of myristoylation modification. This study provided a new computational method for identifying myristoylation sites in protein sequences. We believe that it can be a useful tool to predict myristoylation sites from protein sequences. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Nevada Test Site craters used for astronaut training

NASA Technical Reports Server (NTRS)

Moore, H. J.

1977-01-01

Craters produced by chemical and nuclear explosives at the Nevada Test Site were used to train astronauts before their lunar missions. The craters have characteristics suitable for reconnaissance-type field investigations. The Schooner test produced a crater about 300 m across and excavated more than 72 m of stratigraphic section deposited in a fairly regular fashion so that systematic observations yield systematic results. Other features common on the moon, such as secondary craters and glass-coated rocks, are present at Schooner crater. Smaller explosive tests on Buckboard Mesa excavated rocks from three horizontal alteration zones within basalt flows so that the original sequence of the zones could be determined. One crater illustrated the characteristics of craters formed across vertical boundaries between rock units. Although the exercises at the Nevada Test Site were only a small part of the training of the astronauts, voice transcripts of Apollo missions 14, 16, and 17 show that the exercises contributed to astronaut performance on the moon.

Extranodal marginal zone lymphoma of mucosa-associated lymphoid tissue with amyloid deposition: a clinicopathologic case series.

PubMed

Ryan, Russell J H; Sloan, J Mark; Collins, A Bernard; Mansouri, Jaleh; Raje, Noopur S; Zukerberg, Lawrence R; Ferry, Judith A

2012-01-01

Extranodal marginal zone lymphoma of mucosa-associated lymphoid tissue (MALT) lymphoma is a mature B-cell neoplasm that typically follows an indolent clinical course. Amyloid deposition associated with MALT lymphoma is uncommon. We describe the clinical and pathologic features of 20 cases of MALT lymphoma and associated amyloid deposition across diverse primary sites. Frozen section immunofluorescence performed on 4 cases suggests that these deposits are a localized form of AL amyloid. Clinical follow-up was available for 15 patients. Amyloid deposits distant from the initial site occurred in 5 cases, always at sites also involved by the underlying lymphoma. No definitive evidence of systemic amyloidosis affecting the heart, kidneys, or liver was present in any patient. Given the generally indolent clinical behavior of MALT lymphomas with associated amyloid, we do not recommend extensive follow-up testing for systemic amyloidosis or more aggressive therapy than would be indicated for other MALT lymphomas of similar clinical stage.

Dating Informed Correlations and Large Earthquake Recurrence at the Hokuri Creek Paleoseismic Site, Alpine Fault, South Island, New Zealand

NASA Astrophysics Data System (ADS)

Biasi, G. P.; Clark, K.; Berryman, K. R.; Cochran, U. A.; Prior, C.

2010-12-01

The Hokuri Creek paleoseismic site on the Alpine fault in south Westland, New Zealand has yielded a remarkable history of fault activity spanning the past ~7000 years. Evidence for earthquake occurrence and timing has been developed primarily from natural exposures created after a geologically major incision event a few hundred years ago. Prior to this event, the elevation of the spillway of Hokuri Creek into its previous drainage was controlled by NE translation of a shutter ridge during earthquakes. Each event increased the base level for sediment accumulation upstream by decimetres to perhaps a metre. Each increase in base level is associated with a period of accumulation principally of clean fine silts and rock flour. With infilling and time, the wetlands reestablish and sedimentation transitions to a slower and more organic-rich phase (Clark et al., this meeting). At least 18 such cycles have been identified at the site. Carbonaceous material is abundant in almost all layers. Much of the dating is done on macrofossils - individual beech tree leaves, reeds, and similar fragile features. Reworking is considered unlikely due to the fragility of the samples. All dates were developed by the Rafter Radiocarbon Laboratory of the National Isotope Centre at GNS. Delta 13C was measured and used to correct for fractionation. Dating earthquakes at the Hokuri Creek site presents some special challenges. Individual stratigraphic sections around the site expose different time intervals. The Main Section series provides the most complete single section, with over 5000 years of represented. Nearby auxiliary exposures cover nearly 1500 years more. Date series from individual exposures tend to be internally very consistent with stratigraphic ordering, but by virtue of their spatial separation, correlations between sections are more difficult. We find, however, that the distinctive layering and the typical 2-4 centuries between primary silt layers provides a way to cross-correlate sections at the site. Within a series of dates from a section, ordering with intrinsic precision of the dates indicates an uncertainty at event horizons on the order of 50 years, while the transitions from peat to silt indicating an earthquake are separated by several times this amount. The effect is to create a stair-stepping date sequence that often allows us to link sections and improve dating resolution in both sections. The combined section provides clear evidence for at least 18 earthquake-induced cycles. Event recurrence would be about 390 years in a simple average. Internal evidence and close examination of date sequences provide preliminary indications of as many as 22 earthquakes could be represented at Hokuri Creek, and a recurrence interval of ~320 years. Both sequences indicate a middle sequence from 3800 to 1000 BC in which recurrence intervals are resolvably longer than average. Variability in recurrence is relatively small - relatively few intervals are even >1.5x the average. This indicates that large earthquakes on the Alpine Fault of South Island, New Zealand are best fit by a time-predictable model.

A machine-learning approach for predicting palmitoylation sites from integrated sequence-based features.

PubMed

Li, Liqi; Luo, Qifa; Xiao, Weidong; Li, Jinhui; Zhou, Shiwen; Li, Yongsheng; Zheng, Xiaoqi; Yang, Hua

2017-02-01

Palmitoylation is the covalent attachment of lipids to amino acid residues in proteins. As an important form of protein posttranslational modification, it increases the hydrophobicity of proteins, which contributes to the protein transportation, organelle localization, and functions, therefore plays an important role in a variety of cell biological processes. Identification of palmitoylation sites is necessary for understanding protein-protein interaction, protein stability, and activity. Since conventional experimental techniques to determine palmitoylation sites in proteins are both labor intensive and costly, a fast and accurate computational approach to predict palmitoylation sites from protein sequences is in urgent need. In this study, a support vector machine (SVM)-based method was proposed through integrating PSI-BLAST profile, physicochemical properties, [Formula: see text]-mer amino acid compositions (AACs), and [Formula: see text]-mer pseudo AACs into the principal feature vector. A recursive feature selection scheme was subsequently implemented to single out the most discriminative features. Finally, an SVM method was implemented to predict palmitoylation sites in proteins based on the optimal features. The proposed method achieved an accuracy of 99.41% and Matthews Correlation Coefficient of 0.9773 for a benchmark dataset. The result indicates the efficiency and accuracy of our method in prediction of palmitoylation sites based on protein sequences.

Meteorological data for four sites at surface-disruption features in Yucca Flat, Nevada Test Site, Nye County, Nevada, 1985-86

USGS Publications Warehouse

Carman, Rita L.

1994-01-01

Surface-disruption features, or craters, resulting from underground nuclear testing at the Nevada Test Site may increase the potential for ground-water recharge in an area that would normally produce little, if any, recharge. This report presents selected meteorological data resulting from a study of two surface-disruption features during May 1985 through June 1986. The data were collected at four adjacent sites in Yucca Flat, about 56 kilometers north of Mercury, Nevada. Three sites (one in each of two craters and one at an undisturbed site at the original land surface) were instrumented to collect meteorological data for calculating bare-soil evaporation. These data include (1) long-wave radiation, (2) short-wave radiation, (3) net radiation, (4) air temperae, and (5) soil surface temperature. Meteorological data also were collected at a weather station at an undisturbed site near the study craters. Data collected at this site include (1) air temperature, (2) relative humidity, (3) wind velocity, and (4) wind direction.

Learning discriminative functional network features of schizophrenia

NASA Astrophysics Data System (ADS)

Gheiratmand, Mina; Rish, Irina; Cecchi, Guillermo; Brown, Matthew; Greiner, Russell; Bashivan, Pouya; Polosecki, Pablo; Dursun, Serdar

2017-03-01

Associating schizophrenia with disrupted functional connectivity is a central idea in schizophrenia research. However, identifying neuroimaging-based features that can serve as reliable "statistical biomarkers" of the disease remains a challenging open problem. We argue that generalization accuracy and stability of candidate features ("biomarkers") must be used as additional criteria on top of standard significance tests in order to discover more robust biomarkers. Generalization accuracy refers to the utility of biomarkers for making predictions about individuals, for example discriminating between patients and controls, in novel datasets. Feature stability refers to the reproducibility of the candidate features across different datasets. Here, we extracted functional connectivity network features from fMRI data at both high-resolution (voxel-level) and a spatially down-sampled lower-resolution ("supervoxel" level). At the supervoxel level, we used whole-brain network links, while at the voxel level, due to the intractably large number of features, we sampled a subset of them. We compared statistical significance, stability and discriminative utility of both feature types in a multi-site fMRI dataset, composed of schizophrenia patients and healthy controls. For both feature types, a considerable fraction of features showed significant differences between the two groups. Also, both feature types were similarly stable across multiple data subsets. However, the whole-brain supervoxel functional connectivity features showed a higher cross-validation classification accuracy of 78.7% vs. 72.4% for the voxel-level features. Cross-site variability and heterogeneity in the patient samples in the multi-site FBIRN dataset made the task more challenging compared to single-site studies. The use of the above methodology in combination with the fully data-driven approach using the whole brain information have the potential to shed light on "biomarker discovery" in schizophrenia.

Subsurface site conditions and geology in the San Fernando earthquake area

DOE Office of Scientific and Technical Information (OSTI.GOV)

Duke, C.M.; Johnson, J.A.; Kharraz, Y.

1971-12-01

The report presents the progress to date in establishing the facts about dynamic subsurface properties and geological features in the area affected by the San Fernando earthquake of February 9, 1971. Special emphasis is given to the locations of accelerographs, seismoscopes and Seismological Field Survey aftershock instruments. Thirty shallow geophysical surveys were made for determination of S and P velocities, with damping measured at some sites. Deep velocity data were obtained from geophysical surveys by others. Soil Mechanics and water well borings by others were utilized. Published and ongoing geological studies were applied. Results are presented in the form ofmore » five geological cross-sections, nine subsurface exploration models extending through basement complex to depths of 14,000 feet, a general geologic map, the shallow geophysical surveys, and selected data on damping.« less

Global emergency medicine journal club: social media responses to the march 2014 annals of emergency medicine journal club on targeted temperature management.

PubMed

Thoma, Brent; Rolston, Daniel; Lin, Michelle

2014-08-01

In March 2014, Annals of Emergency Medicine continued a successful collaboration with an academic Web site, Academic Life in Emergency Medicine (ALiEM), to host another Global Emergency Medicine Journal Club session featuring the 2013 New England Journal of Medicine article "Targeted Temperature Management at 33°C (91.4°F) Versus 36°C (96.8°F) After Cardiac Arrest" by Nielsen et al. This online journal club used Twitter conversations, a live videocast with the authors, and detailed discussions on the ALiEM Web site's comment section. This summary article details the community discussion, shared insights, and analytic data generated using this novel, multiplatform approach. Copyright © 2014 American College of Emergency Physicians. Published by Mosby, Inc. All rights reserved.

Selection of nest-site habitat by interior least terns in relation to sandbar construction

USGS Publications Warehouse

Sherfy, M.H.; Stucker, J.H.; Buhl, D.A.

2012-01-01

Federally endangered interior least terns (Sternula antillarum) nest on bare or sparsely vegetated sandbars on midcontinent river systems. Loss of nesting habitat has been implicated as a cause of population declines, and managing these habitats is a major initiative in population recovery. One such initiative involves construction of mid-channel sandbars on the Missouri River, where natural sandbar habitat has declined in quantity and quality since the late 1990s. We evaluated nest-site habitat selection by least terns on constructed and natural sandbars by comparing vegetation, substrate, and debris variables at nest sites (na =a 798) and random points (na =a 1,113) in bare or sparsely vegetated habitats. Our logistic regression models revealed that a broader suite of habitat features was important in nest-site selection on constructed than on natural sandbars. Odds ratios for habitat variables indicated that avoidance of habitat features was the dominant nest-site selection process on both sandbar types, with nesting terns being attracted to nest-site habitat features (gravel and debris) and avoiding vegetation only on constructed sandbars, and avoiding silt and leaf litter on both sandbar types. Despite the seemingly uniform nature of these habitats, our results suggest that a complex suite of habitat features influences nest-site choice by least terns. However, nest-site selection in this social, colonially nesting species may be influenced by other factors, including spatial arrangement of bare sand habitat, proximity to other least terns, and prior habitat occupancy by piping plovers (Charadrius melodus). We found that nest-site selection was sensitive to subtle variation in habitat features, suggesting that rigor in maintaining habitat condition will be necessary in managing sandbars for the benefit of least terns. Further, management strategies that reduce habitat features that are avoided by least terns may be the most beneficial to nesting least terns. ?? 2011 The Wildlife Society.

Selection of nest-site habitat by interior least terns in relation to sandbar construction

USGS Publications Warehouse

Sherfy, Mark H.; Stucker, Jennifer H.; Buhl, Deborah A.

2012-01-01

Federally endangered interior least terns (Sternula antillarum) nest on bare or sparsely vegetated sandbars on midcontinent river systems. Loss of nesting habitat has been implicated as a cause of population declines, and managing these habitats is a major initiative in population recovery. One such initiative involves construction of mid-channel sandbars on the Missouri River, where natural sandbar habitat has declined in quantity and quality since the late 1990s. We evaluated nest-site habitat selection by least terns on constructed and natural sandbars by comparing vegetation, substrate, and debris variables at nest sites (n = 798) and random points (n = 1,113) in bare or sparsely vegetated habitats. Our logistic regression models revealed that a broader suite of habitat features was important in nest-site selection on constructed than on natural sandbars. Odds ratios for habitat variables indicated that avoidance of habitat features was the dominant nest-site selection process on both sandbar types, with nesting terns being attracted to nest-site habitat features (gravel and debris) and avoiding vegetation only on constructed sandbars, and avoiding silt and leaf litter on both sandbar types. Despite the seemingly uniform nature of these habitats, our results suggest that a complex suite of habitat features influences nest-site choice by least terns. However, nest-site selection in this social, colonially nesting species may be influenced by other factors, including spatial arrangement of bare sand habitat, proximity to other least terns, and prior habitat occupancy by piping plovers (Charadrius melodus). We found that nest-site selection was sensitive to subtle variation in habitat features, suggesting that rigor in maintaining habitat condition will be necessary in managing sandbars for the benefit of least terns. Further, management strategies that reduce habitat features that are avoided by least terns may be the most beneficial to nesting least terns.

TSAPA: identification of tissue-specific alternative polyadenylation sites in plants.

PubMed

Ji, Guoli; Chen, Moliang; Ye, Wenbin; Zhu, Sheng; Ye, Congting; Su, Yaru; Peng, Haonan; Wu, Xiaohui

2018-06-15

Alternative polyadenylation (APA) is now emerging as a widespread mechanism modulated tissue-specifically, which highlights the need to define tissue-specific poly(A) sites for profiling APA dynamics across tissues. We have developed an R package called TSAPA based on the machine learning model for identifying tissue-specific poly(A) sites in plants. A feature space including more than 200 features was assembled to specifically characterize poly(A) sites in plants. The classification model in TSAPA can be customized by selecting desirable features or classifiers. TSAPA is also capable of predicting tissue-specific poly(A) sites in unannotated intergenic regions. TSAPA will be a valuable addition to the community for studying dynamics of APA in plants. https://github.com/BMILAB/TSAPA. Supplementary data are available at Bioinformatics online.

Histopathology of Incidental Findings in Cynomolgus Monkeys (Macaca Fascicularis) Used in Toxicity Studies

PubMed Central

Sato, Junko; Doi, Takuya; Kanno, Takeshi; Wako, Yumi; Tsuchitani, Minoru; Narama, Isao

2012-01-01

The purpose of our publication is to widely communicate pictures of spontaneous findings occurring in cynomolgus monkeys. Focal lymphoplasmacytic infiltration is commonly seen in the general organs. The frequency and severity of these lesions may be influenced by the administration of drugs with an effect on the immune system. Lymphoplasmacytic infiltration in the lamina propria of the stomach is also frequently seen in cynomolgus monkeys, and it is caused mainly by a Helicobacter pylori infection. Various degrees of brown pigments are observed in various organs, and it is possible to distinguish the material of the pigments by its morphological features and site. A focal/segmental glomerular lesion is occasionally seen in a section of the kidney, and the minimal lesion has no influence on the urinalysis. We showed the common glomerular lesions in HE-stained sections, as well as in PAM- or PAS-stained sections, for understanding the details. Young and pubertal monkeys are usually used in toxicity studies; therefore, understanding various maturation stages of the genital system is important. In particular, the female genital system needs to be understood in the morphology, because their cyclic changes are different from other laboratory animals. Thus, we present the normal features of the cyclic changes of the female genital organs. Furthermore, we provide more information on spontaneous findings in cynomolgus monkeys for exact diagnoses in toxicity studies. PMID:22481861

Web Content Accessibility of Consumer Health Information Web Sites for People with Disabilities: A Cross Sectional Evaluation

PubMed Central

Parmanto, Bambang

2004-01-01

Background The World Wide Web (WWW) has become an increasingly essential resource for health information consumers. The ability to obtain accurate medical information online quickly, conveniently and privately provides health consumers with the opportunity to make informed decisions and participate actively in their personal care. Little is known, however, about whether the content of this online health information is equally accessible to people with disabilities who must rely on special devices or technologies to process online information due to their visual, hearing, mobility, or cognitive limitations. Objective To construct a framework for an automated Web accessibility evaluation; to evaluate the state of accessibility of consumer health information Web sites; and to investigate the possible relationships between accessibility and other features of the Web sites, including function, popularity and importance. Methods We carried out a cross-sectional study of the state of accessibility of health information Web sites to people with disabilities. We selected 108 consumer health information Web sites from the directory service of a Web search engine. A measurement framework was constructed to automatically measure the level of Web Accessibility Barriers (WAB) of Web sites following Web accessibility specifications. We investigated whether there was a difference between WAB scores across various functional categories of the Web sites, and also evaluated the correlation between the WAB and Alexa traffic rank and Google Page Rank of the Web sites. Results We found that none of the Web sites we looked at are completely accessible to people with disabilities, i.e., there were no sites that had no violation of Web accessibility rules. However, governmental and educational health information Web sites do exhibit better Web accessibility than the other categories of Web sites (P < 0.001). We also found that the correlation between the WAB score and the popularity of a Web site is statistically significant (r = 0.28, P < 0.05), although there is no correlation between the WAB score and the importance of the Web sites (r = 0.15, P = 0.111). Conclusions Evaluation of health information Web sites shows that no Web site scrupulously abides by Web accessibility specifications, even for entities mandated under relevant laws and regulations. Government and education Web sites show better performance than Web sites among other categories. Accessibility of a Web site may have a positive impact on its popularity in general. However, the Web accessibility of a Web site may not have a significant relationship with its importance on the Web. PMID:15249268

Stratigraphic and structural configuration of the Navajo (Jurassic) through Ouray (Mississippian-Devonian) formations in the vicinity of Davis and Lavender Canyons, southeastern Utah

DOE Office of Scientific and Technical Information (OSTI.GOV)

McCleary, J.R.; Romie, J.E.

1986-04-01

This study developed a three-dimensional computer model of stratigraphic and structural relationships within a 3497-km/sup 2/ (1350-mi/sup 2/) study area centered on the proposed site for a high-level nuclear waste repository in southeastern Utah. The model consists of a sequence of internally reconciled isopach and structure contour maps horizontally registered and stored in stratigraphic order. This model can be used to display cross sections, perspective block diagrams, or fence diagrams at any orientation; estimate depth of formation contacts and thicknesses for any new stratigraphic or hydrologic boreholes; facilitate ground-water modeling studies; and evaluate the structural and stratigraphic evolution of themore » study area. This study also includes limited evaluations of aquifer continuity in the Elephant Canyon and Honaker Trail Formations, and of salt dissolution and flowage features as interpreted from geophysical logs. The study identified a long history of movement in the fault system in the north-central part of the study area and a major salt flowage feature in the northeastern part. It describes the Elephant Canyon Formation aquifer as laterally limited, the Honaker Trail Formation aquifer as fairly continuous over the area, and Beef Basin in the southern part of the area as a probable dissolution feature. It also concludes that the Shay-Bridger Jack-Salt Creek Graben system is apparently a vertically continuous feature between the basement and ground surface. No stratigraphic or structural discontinuities were detected in the vicinity of Davis Canyon that appear to be detrimental to the siting of a waste repository.« less

Shocked quartz in the cretaceous-tertiary boundary clays: Evidence for a global distribution

USGS Publications Warehouse

Bohor, B.F.; Modreski, P.J.; Foord, E.E.

1987-01-01

Shocked quartz grains displaying planar features were isolated from Cretaceous-Tertiary boundary days at five sites in Europe, a core from the north-central Pacific Ocean, and a site in New Zealand. At all of these sites, the planar features in the shocked quartz can be indexed to rational crystallographic planes of the quartz lattice. The grains display streaking indicative of shock in x-ray diffraction photographs and also show reduced refractive indices. These characteristic features of shocked quartz at several sites worldwide confirm that an impact event at the Cretaceous-Tertiary boundary distributed ejecta products in an earth-girdling dust cloud, as postulated by the Alvarez impact hypothesis.

Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences.

PubMed

Andrabi, Munazah; Hutchins, Andrew Paul; Miranda-Saavedra, Diego; Kono, Hidetoshi; Nussinov, Ruth; Mizuguchi, Kenji; Ahmad, Shandar

2017-06-22

DNA shape is emerging as an important determinant of transcription factor binding beyond just the DNA sequence. The only tool for large scale DNA shape estimates, DNAshape was derived from Monte-Carlo simulations and predicts four broad and static DNA shape features, Propeller twist, Helical twist, Minor groove width and Roll. The contributions of other shape features e.g. Shift, Slide and Opening cannot be evaluated using DNAshape. Here, we report a novel method DynaSeq, which predicts molecular dynamics-derived ensembles of a more exhaustive set of DNA shape features. We compared the DNAshape and DynaSeq predictions for the common features and applied both to predict the genome-wide binding sites of 1312 TFs available from protein interaction quantification (PIQ) data. The results indicate a good agreement between the two methods for the common shape features and point to advantages in using DynaSeq. Predictive models employing ensembles from individual conformational parameters revealed that base-pair opening - known to be important in strand separation - was the best predictor of transcription factor-binding sites (TFBS) followed by features employed by DNAshape. Of note, TFBS could be predicted not only from the features at the target motif sites, but also from those as far as 200 nucleotides away from the motif.

Effects of management practices on grassland birds: Greater Prairie-Chicken

USGS Publications Warehouse

Svedarsky, W. Daniel; Toepfer, J.E.; Westemeier, R.L.; Robel, R.J.

2003-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the breeding distribution of Greater Prairie-Chicken in the United States and southern Canada. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species’ response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species’ breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management is posted at the Web site mentioned below.

A systematic identification of species-specific protein succinylation sites using joint element features information.

PubMed

Hasan, Md Mehedi; Khatun, Mst Shamima; Mollah, Md Nurul Haque; Yong, Cao; Guo, Dianjing

2017-01-01

Lysine succinylation, an important type of protein posttranslational modification, plays significant roles in many cellular processes. Accurate identification of succinylation sites can facilitate our understanding about the molecular mechanism and potential roles of lysine succinylation. However, even in well-studied systems, a majority of the succinylation sites remain undetected because the traditional experimental approaches to succinylation site identification are often costly, time-consuming, and laborious. In silico approach, on the other hand, is potentially an alternative strategy to predict succinylation substrates. In this paper, a novel computational predictor SuccinSite2.0 was developed for predicting generic and species-specific protein succinylation sites. This predictor takes the composition of profile-based amino acid and orthogonal binary features, which were used to train a random forest classifier. We demonstrated that the proposed SuccinSite2.0 predictor outperformed other currently existing implementations on a complementarily independent dataset. Furthermore, the important features that make visible contributions to species-specific and cross-species-specific prediction of protein succinylation site were analyzed. The proposed predictor is anticipated to be a useful computational resource for lysine succinylation site prediction. The integrated species-specific online tool of SuccinSite2.0 is publicly accessible.

Discovering body site and severity modifiers in clinical texts

PubMed Central

Dligach, Dmitriy; Bethard, Steven; Becker, Lee; Miller, Timothy; Savova, Guergana K

2014-01-01

Objective To research computational methods for discovering body site and severity modifiers in clinical texts. Methods We cast the task of discovering body site and severity modifiers as a relation extraction problem in the context of a supervised machine learning framework. We utilize rich linguistic features to represent the pairs of relation arguments and delegate the decision about the nature of the relationship between them to a support vector machine model. We evaluate our models using two corpora that annotate body site and severity modifiers. We also compare the model performance to a number of rule-based baselines. We conduct cross-domain portability experiments. In addition, we carry out feature ablation experiments to determine the contribution of various feature groups. Finally, we perform error analysis and report the sources of errors. Results The performance of our method for discovering body site modifiers achieves F1 of 0.740–0.908 and our method for discovering severity modifiers achieves F1 of 0.905–0.929. Discussion Results indicate that both methods perform well on both in-domain and out-domain data, approaching the performance of human annotators. The most salient features are token and named entity features, although syntactic dependency features also contribute to the overall performance. The dominant sources of errors are infrequent patterns in the data and inability of the system to discern deeper semantic structures. Conclusions We investigated computational methods for discovering body site and severity modifiers in clinical texts. Our best system is released open source as part of the clinical Text Analysis and Knowledge Extraction System (cTAKES). PMID:24091648

Discovering body site and severity modifiers in clinical texts.

PubMed

Dligach, Dmitriy; Bethard, Steven; Becker, Lee; Miller, Timothy; Savova, Guergana K

2014-01-01

To research computational methods for discovering body site and severity modifiers in clinical texts. We cast the task of discovering body site and severity modifiers as a relation extraction problem in the context of a supervised machine learning framework. We utilize rich linguistic features to represent the pairs of relation arguments and delegate the decision about the nature of the relationship between them to a support vector machine model. We evaluate our models using two corpora that annotate body site and severity modifiers. We also compare the model performance to a number of rule-based baselines. We conduct cross-domain portability experiments. In addition, we carry out feature ablation experiments to determine the contribution of various feature groups. Finally, we perform error analysis and report the sources of errors. The performance of our method for discovering body site modifiers achieves F1 of 0.740-0.908 and our method for discovering severity modifiers achieves F1 of 0.905-0.929. Results indicate that both methods perform well on both in-domain and out-domain data, approaching the performance of human annotators. The most salient features are token and named entity features, although syntactic dependency features also contribute to the overall performance. The dominant sources of errors are infrequent patterns in the data and inability of the system to discern deeper semantic structures. We investigated computational methods for discovering body site and severity modifiers in clinical texts. Our best system is released open source as part of the clinical Text Analysis and Knowledge Extraction System (cTAKES).

An Educational System to Help Students Assess Website Features and Identify High-Risk Websites

ERIC Educational Resources Information Center

Kajiyama, Tomoko; Echizen, Isao

2015-01-01

Purpose: The purpose of this paper is to propose an effective educational system to help students assess Web site risk by providing an environment in which students can better understand a Web site's features and determine the risks of accessing the Web site for themselves. Design/methodology/approach: The authors have enhanced a prototype…

A Comparison of two Brunhes Chron Geomagnetic Excursions Recorded by Neighbouring North Atlantic Sites (ODP Sites 1062 and 1063)

NASA Astrophysics Data System (ADS)

Bourne, M.; Mac Niocaill, C.; Knudsen, M. F.; Thomas, A. L.; Henderson, G. M.

2012-04-01

A full picture of geomagnetic field behaviour during the Blake excursion is currently limited by a paucity of robust, high-resolution records of this ambiguous event. Some records seem to point towards a 'double-excursion' character whilst others fail to record the Blake excursion at all. We present here a high-resolution record of the Blake excursion obtained from Ocean Drilling Program (ODP) Site 1062 on the Blake Outer Ridge (ODP Leg 172). Palaeomagnetic measurements in three cores reveal a single excursional feature associated with a broad palaeointensity low, characterised by rapid transitions (less than 500 years) between a stable normal polarity and a fully-reversed, pseudo-stable polarity. A relatively high sedimentation rate (~10 cm kyr-1) allows the determination of transitional field behaviour during the excursion. Rather than assuming a constant sedimentation rate between assigned age tie-points, we employ measurements of 230Thxs concentrations in the sediment to assess variations in the sedimentation rates through the core sections of interest. This allows us to determine an age and duration for the two excursions with greater accuracy and known uncertainty. Our new age model gives an age of 127 ka for the midpoint of the Blake event at Site 1062. The age model also gives a duration for the directional excursion of 7.1±1.6 kyr. This duration is similar to that previously reported for the Iceland Basin Excursion (~185 ka) from the nearby Bermuda Rise (ODP Site 1063), which recorded a ~7-8 kyr event. Similarly, a high sedimentation rate (10-15 cm kyr-1) at this site allows a high-resolution reconstruction of the geomagnetic field behaviour during the Iceland Basin Excursion. The Site 1063 palaeomagnetic record suggests more complicated behaviour than that of the Blake excursion at Site 1062. Instead, transitional VGP paths are characterised by stop-and-go behaviour between VGP clusters that may be related to long-standing thermo-dynamic features of the core-mantle system. The long duration of fully reversed directions at the two sites is somewhat longer than that typically assumed for excursions and appears to suggest that there may be a degree of stability associated with the two excursional events. We will present a comparison of the geomagnetic field behaviour of the two excursions as recorded at these two sites.

Pathology report assessment of incidental gallbladder carcinoma diagnosed from cholecystectomy specimens: results of a French multicentre survey.

PubMed

Chatelain, Denis; Fuks, David; Farges, Olivier; Attencourt, Christophe; Pruvot, François René; Regimbeau, Jean-Marc

2013-12-01

To assess the accuracy of pathology reports on gallbladder specimens from patients operated on for incidental gallbladder carcinoma. Demographic data, details on pathological reports including gross and microscopic features section were recorded in 100 selected patients with incidental gallbladder carcinoma diagnosed from 2004 to 2007. Pathology reports had a conventional format in 93% of cases, without any standardization. Turnaround time ranged from 1 to 35 days. Frozen sections were performed in 20% of cases. The reports failed to give information on prognostic histological factors: exact tumour site (missing in 55% of cases), depth of tumour infiltration within the gallbladder wall (missing in 10%), surgical margins (missing in 40% for the cystic duct margin), tumour differentiation (missing in 28%), vascular invasion (missing in 52%) and perineural invasion (missing in 51%). Lymph node status could be assessed in 44% of cases. Distances between the tumour and the cystic duct and circumferential margins were not specified in 68% and 84% of cases. Only 29% of the reports clearly stated the pTNM stage in the conclusion section. The pT stage with margin status and tumour site was only mentioned in 30% of the reports. Pathology reports on gallbladder carcinoma from participating centres frequently lacked important information on key prognostic histological factors. Copyright © 2013 Editrice Gastroenterologica Italiana S.r.l. Published by Elsevier Ltd. All rights reserved.

Genomic characterisation of Arachis porphyrocalyx (Valls & C.E. Simpson, 2005) (Leguminosae): multiple origin of Arachis species with x = 9.

PubMed

Celeste, Silvestri María; Ortiz, Alejandra Marcela; Robledo, Germán Ariel; Valls, José Francisco Montenegro; Lavia, Graciela Inés

2017-01-01

The genus Arachis Linnaeus, 1753 comprises four species with x = 9, three belong to the section Arachis: Arachis praecox (Krapov. W.C. Greg. & Valls, 1994), Arachis palustris (Krapov. W.C. Greg. & Valls, 1994) and Arachis decora (Krapov. W.C. Greg. & Valls, 1994) and only one belongs to the section Erectoides: Arachis porphyrocalyx (Valls & C.E. Simpson, 2005). Recently, the x = 9 species of section Arachis have been assigned to G genome, the latest described so far. The genomic relationship of Arachis porphyrocalyx with these species is controversial. In the present work, we carried out a karyotypic characterisation of Arachis porphyrocalyx to evaluate its genomic structure and analyse the origin of all x = 9 Arachis species. Arachis porphyrocalyx showed a karyotype formula of 14m+4st, one pair of A chromosomes, satellited chromosomes type 8, one pair of 45S rDNA sites in the SAT chromosomes, one pair of 5S rDNA sites and pericentromeric C-DAPI+ bands in all chromosomes. Karyotype structure indicates that Arachis porphyrocalyx does not share the same genome type with the other three x = 9 species and neither with the remaining Erectoides species. Taking into account the geographic distribution, morphological and cytogenetic features, the origin of species with x = 9 of the genus Arachis cannot be unique; instead, they originated at least twice in the evolutionary history of the genus.

Heritage landscape structure analysis in surrounding environment of the Grand Canal Yangzhou section

NASA Astrophysics Data System (ADS)

Xu, Huan

2018-03-01

The Yangzhou section of the Grand Canal is selected for a case study in this paper. The ZY-3 satellite images of 2016 are adopted as the data source. RS and GIS are used to analyze the landscape classification of the surrounding landscape of the Grand Canal, and the classification results are precisely evaluated. Next, the overall features of the landscape pattern are analyzed. The results showed that the overall accuracy is 82.5% and the Kappa coefficient is 78.17% in the Yangzhou section. The producer’s accuracy of the water landscape is the highest, followed by that of the other landscape, farmland landscape, garden and forest landscape, architectural landscape. The user’s accuracy of different landscape types can be ranked in a descending order, as the water landscape, farmland landscape, road landscape, architectural landscape, other landscape, garden and forest landscape. The farmland landscape and the architectural landscape are the top advantageous landscape types of the heritage site. The research findings can provide basic data for landscape protection, management and sustainable development of the Grand Canal Yangzhou section.

Detection of Tuberculosis Infection Hotspots Using Activity Spaces Based Spatial Approach in an Urban Tokyo, from 2003 to 2011.

PubMed

Izumi, Kiyohiko; Ohkado, Akihiro; Uchimura, Kazuhiro; Murase, Yoshiro; Tatsumi, Yuriko; Kayebeta, Aya; Watanabe, Yu; Ishikawa, Nobukatsu

2015-01-01

Identifying ongoing tuberculosis infection sites is crucial for breaking chains of transmission in tuberculosis-prevalent urban areas. Previous studies have pointed out that detection of local accumulation of tuberculosis patients based on their residential addresses may be limited by a lack of matching between residences and tuberculosis infection sites. This study aimed to identify possible tuberculosis hotspots using TB genotype clustering statuses and a concept of "activity space", a place where patients spend most of their waking hours. We further compared the spatial distribution by different residential statuses and describe urban environmental features of the detected hotspots. Culture-positive tuberculosis patients notified to Shinjuku city from 2003 to 2011 were enrolled in this case-based cross-sectional study, and their demographic and clinical information, TB genotype clustering statuses, and activity space were collected. Spatial statistics (Global Moran's I and Getis-Ord Gi* statistics) identified significant hotspots in 152 census tracts, and urban environmental features and tuberculosis patients' characteristics in these hotspots were assessed. Of the enrolled 643 culture-positive tuberculosis patients, 416 (64.2%) were general inhabitants, 42 (6.5%) were foreign-born people, and 184 were homeless people (28.6%). The percentage of overall genotype clustering was 43.7%. Genotype-clustered general inhabitants and homeless people formed significant hotspots around a major railway station, whereas the non-clustered general inhabitants formed no hotspots. This suggested the detected hotspots of activity spaces may reflect ongoing tuberculosis transmission sites and were characterized by smaller residential floor size and a higher proportion of non-working households. Activity space-based spatial analysis suggested possible TB transmission sites around the major railway station and it can assist in further comprehension of TB transmission dynamics in an urban setting in Japan.

Shakespeare Goes Online: Web Resources for Teaching Shakespeare.

ERIC Educational Resources Information Center

Schuetz, Carol L.

This annotated bibliography contains five sections and 62 items. The first section lists general resources including six Web site addresses; the second section, on Shakespeare's works, contains five Web site addresses; the third section, on Shakespeare and the Globe Theatre, provides five Web site addresses; the fourth section presents classroom…

Interpretation of magnetotelluric measurements over an electrically dispersive one-dimensional earth

DOE Office of Scientific and Technical Information (OSTI.GOV)

Patella, D.

1987-01-01

Frequency dispersion of electromagnetic parameters of earth materials has been widely documented in recent years. It is claimed that magnetotellurics (MT)may be significantly affected by dispersion. This paper studies the MT plane-wave interpretative problem for a one-dimensional earth characterized by the presence of dispersive layers. The theoretical properties of the MT field under the dispersion hypothesis, and the main features of the dispersion phenomenon are synthetically reviewed. The examination of previously published MT curve responses over some models of dispersive earth section shows that ambiguity can arise when interpreting MT data with no other source of information. Thus it maybemore » almost impossible to distinguish between the response of a dispersive section and an equally probable dispersion-free section. The dispersion magnetotelluric (DMT) method is proposed as a means to resolve the ambiguity. The DMT method is based on the execution, at the same site, of an MT sounding and of an always dispersion-free dc geoelectric deep sounding.« less

Cavity detection and delineation research. Part 4: Microgravimetric survey: Manatee Springs Site, Florida

NASA Astrophysics Data System (ADS)

Butler, D. K.; Whitten, C. B.; Smith, F. L.

1983-03-01

Results of a microgravimetric survey at Manatee Springs, Levy County, Fla., are presented. The survey area was 100 by 400 ft, with 20-ft gravity station spacing, and with the long dimension of the area approximately perpendicular to the known trend of the main cavity. The main cavity is about 80 to 100 ft below the surface and has a cross section about 16 to 20 ft in height and 30 to 40 ft in width beneath the survey area. Using a density contrast of -1.3 g/cucm, the gravity anomaly is calculated to be -35 micro Gal with a width at half maximum of 205 ft. The microgravimetric survey results clearly indicate a broad negative anomaly coincident with the location and trend of the cavity system across the survey area. The anomaly magnitude and width are consistent with those calculated from the known depth and dimensions of the main cavity. In addition, a small, closed negative anomaly feature, superimposed on the broad negative feature due to the main cavity, satisfactorily delineated a small secondary cavity feature which was discovered and mapped by cave divers.

A combinatorial feature selection approach to describe the QSAR of dual site inhibitors of acetylcholinesterase.

PubMed

Asadabadi, Ebrahim Barzegari; Abdolmaleki, Parviz; Barkooie, Seyyed Mohsen Hosseini; Jahandideh, Samad; Rezaei, Mohammad Ali

2009-12-01

Regarding the great potential of dual binding site inhibitors of acetylcholinesterase as the future potent drugs of Alzheimer's disease, this study was devoted to extraction of the most effective structural features of these inhibitors from among a large number of quantitative descriptors. To do this, we adopted a unique approach in quantitative structure-activity relationships. An efficient feature selection method was emphasized in such an approach, using the confirmative results of different routine and novel feature selection methods. The proposed methods generated quite consistent results ensuring the effectiveness of the selected structural features.

2D and 3D characterization of pore defects in die cast AM60

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Zhuofei; CanmetMATERIALS, 183 Longwood Road South, Hamilton L8P 0A5, Ontario Canada; Maurey, Alexandre

2016-04-15

The widespread application of die castings can be hampered due to the potential of large scale porosity to act as nucleation sites for fracture and fatigue. It is therefore important to develop robust approaches to the characterization of porosity providing parameters that can be linked to the material's mechanical properties. We have tackled this problem in a study of the AM60 die cast Mg alloy, using samples extracted from a prototype shock tower. A quantitative characterization of porosity has been undertaken, analyzing porosity in both 2D (using classical metallographic methods) and in 3D (using X-ray computed tomography (XCT)). Metallographic characterizationmore » results show that shrinkage pores and small gas pores can be distinguished based on their distinct geometrical features. Shrinkage pores are irregular with multiple arms, resulting in a form factor less than 0.4. In contrast, gas pores are generally more circular in shape yielding form factors larger than 0.6. XCT provides deeper insight into the shape of pores, although this understanding is limited by the resolution obtainable by laboratory based XCT. It also shows how 2D sectioning can produce artefacts as single complex pores are sectioned into multiple small pores. - Highlights: • Mg (e.g. AM60) die castings may contain large scale porosity that act as nucleation sites for fracture and fatigue • Quantitative characterization of porosity metallography (2D) and X-ray tomography (3D) is used • Shrinkage pores and small gas pores can be distinguished based on their distinct geometrical features. • Shrinkage pores are irregular giving a form factor < 0.4; gas pores are rounder with form factors > 0.6 • XCT enables pore visualization, although limited by the resolution obtainable by laboratory based XCT.« less

On Social e-Learning

NASA Astrophysics Data System (ADS)

Kim, Won; Jeong, Ok-Ran

Social Web sites include social networking sites and social media sites. They make it possible for people to share user-created contents online and to interact and stay connected with their online people networks. The social features of social Web sites, appropriately adapted, can help turn e-learning into social e-learning and make e-learning significantly more effective. In this paper, we develop requirements for social e-learning systems. They include incorporating the many of the social features of social Web sites, accounting for all key stakeholders and learning subjects, and curbing various types of misuses by people. We also examine the capabilities of representative social e-learning Web sites that are available today.

Evaluating stability of histomorphometric features across scanner and staining variations: predicting biochemical recurrence from prostate cancer whole slide images

NASA Astrophysics Data System (ADS)

Leo, Patrick; Lee, George; Madabhushi, Anant

2016-03-01

Quantitative histomorphometry (QH) is the process of computerized extraction of features from digitized tissue slide images. Typically these features are used in machine learning classifiers to predict disease presence, behavior and outcome. Successful robust classifiers require features that both discriminate between classes of interest and are stable across data from multiple sites. Feature stability may be compromised by variation in slide staining and scanning procedures. These laboratory specific variables include dye batch, slice thickness and the whole slide scanner used to digitize the slide. The key therefore is to be able to identify features that are not only discriminating between the classes of interest (e.g. cancer and non-cancer or biochemical recurrence and non- recurrence) but also features that will not wildly fluctuate on slides representing the same tissue class but from across multiple different labs and sites. While there has been some recent efforts at understanding feature stability in the context of radiomics applications (i.e. feature analysis of radiographic images), relatively few attempts have been made at studying the trade-off between feature stability and discriminability for histomorphometric and digital pathology applications. In this paper we present two new measures, preparation-induced instability score (PI) and latent instability score (LI), to quantify feature instability across and within datasets. Dividing PI by LI yields a ratio for how often a feature for a specific tissue class (e.g. low grade prostate cancer) is different between datasets from different sites versus what would be expected from random chance alone. Using this ratio we seek to quantify feature vulnerability to variations in slide preparation and digitization. Since our goal is to identify stable QH features we evaluate these features for their stability and thus inclusion in machine learning based classifiers in a use case involving prostate cancer. Specifically we examine QH features which may predict 5 year biochemical recurrence for prostate cancer patients who have undergone radical prostatectomy from digital slide images of surgically excised tissue specimens, 5 year biochemical recurrence being a strong predictor of disease recurrence. In this study we evaluated the ability of our feature robustness indices to identify the most stable and predictive features of 5 year biochemical recurrence using digitized slide images of surgically excised prostate cancer specimens from 80 different patients across 4 different sites. A total of 242 features from 5 different feature families were investigated to identify the most stable QH features from our set. Our feature robustness indices (PI and LI) suggested that five feature families (graph, shape, co-occurring gland tensors, gland sub-graphs, texture) were susceptible to variations in slide preparation and digitization across various sites. The family least affected was shape features in which 19.3% of features varied across laboratories while the most vulnerable family, at 55.6%, was the gland disorder features. However the disorder features were the most stable within datasets being different between random halves of a dataset in an average of just 4.1% of comparisons while texture features were the most unstable being different at a rate of 4.7%. We also compared feature stability across two datasets before and after color normalization. Color normalization decreased feature stability with 8% and 34% of features different between the two datasets in two outcome groups prior to normalization and 49% and 51% different afterwards. Our results appear to suggest that evaluation of QH features across multiple sites needs to be undertaken to assess robustness and class discriminability alone should not represent the benchmark for selection of QH features to build diagnostic and prognostic digital pathology classifiers.

Sandhill crane roost selection, human disturbance, and forage resources

USGS Publications Warehouse

Pearse, Aaron T.; Krapu, Gary; Brandt, David

2017-01-01

Sites used for roosting represent a key habitat requirement for many species of birds because availability and quality of roost sites can influence individual fitness. Birds select roost sites based on numerous factors, requirements, and motivations, and selection of roosts can be dynamic in time and space because of various ecological and environmental influences. For sandhill cranes (Antigone canadensis) at their main spring-staging area along the Platte River in south-central Nebraska, USA, past investigations of roosting cranes focused on physical channel characteristics related to perceived security as motivating roost distribution. We used 6,310 roost sites selected by 313 sandhill cranes over 5 spring migration seasons (2003–2007) to quantify resource selection functions of roost sites on the central Platte River using a discrete choice analysis. Sandhill cranes generally showed stronger selection for wider channels with shorter bank vegetation situated farther from potential human disturbance features such as roads, bridges, and dwellings. Furthermore, selection for roost sites with preferable physical characteristics (wide channels with short bank vegetation) was more resilient to nearby disturbance features than more narrow channels with taller bank vegetation. The amount of cornfields surrounding sandhill crane roost sites positively influenced relative probability of use but only for more narrow channels < 100 m and those with shorter bank vegetation. We confirmed key resource features that sandhill cranes selected at river channels along the Platte River, and after incorporating spatial variation due to human disturbance, our understanding of roost site selection was more robust, providing insights on how disturbance may interact with physical habitat features. Managers can use information on roost-site selection when developing plans to increase probability of crane use at existing roost sites and to identify new areas for potential use if existing sites become limited.

User's manual for the National Water Information System of the U.S. Geological Survey: Automated Data Processing System (ADAPS)

USGS Publications Warehouse

,

2003-01-01

The Automated Data Processing System (ADAPS) was developed for the processing, storage, and retrieval of water data, and is part of the National Water Information System (NWIS) developed by the U.S. Geological Survey. NWIS is a distributed water database in which data can be processed over a network of computers at U.S. Geological Survey offices throughout the United States. NWIS comprises four subsystems: ADAPS, the Ground-Water Site Inventory System (GWSI), the Water-Quality System (QWDATA), and the Site-Specific Water-Use Data System (SWUDS). This section of the NWIS User's Manual describes the automated data processing of continuously recorded water data, which primarily are surface-water data; however, the system also allows for the processing of water-quality and ground-water data. This manual describes various components and features of the ADAPS, and provides an overview of the data processing system and a description of the system framework. The components and features included are: (1) data collection and processing, (2) ADAPS menus and programs, (3) command line functions, (4) steps for processing station records, (5) postprocessor programs control files, (6) the standard format for transferring and entering unit and daily values, and (7) relational database (RDB) formats.

Identification of S-glutathionylation sites in species-specific proteins by incorporating five sequence-derived features into the general pseudo-amino acid composition.

PubMed

Zhao, Xiaowei; Ning, Qiao; Ai, Meiyue; Chai, Haiting; Yang, Guifu

2016-06-07

As a selective and reversible protein post-translational modification, S-glutathionylation generates mixed disulfides between glutathione (GSH) and cysteine residues, and plays an important role in regulating protein activity, stability, and redox regulation. To fully understand S-glutathionylation mechanisms, identification of substrates and specific S-Glutathionylated sites is crucial. Experimental identification of S-glutathionylated sites is labor-intensive and time consuming, so establishing an effective computational method is much desirable due to their convenient and fast speed. Therefore, in this study, a new bioinformatics tool named SSGlu (Species-Specific identification of Protein S-glutathionylation Sites) was developed to identify species-specific protein S-glutathionylated sites, utilizing support vector machines that combine multiple sequence-derived features with a two-step feature selection. By 5-fold cross validation, the performance of SSGlu was measured with an AUC of 0.8105 and 0.8041 for Homo sapiens and Mus musculus, respectively. Additionally, SSGlu was compared with the existing methods, and the higher MCC and AUC of SSGlu demonstrated that SSGlu was very promising to predict S-glutathionylated sites. Furthermore, a site-specific analysis showed that S-glutathionylation intimately correlated with the features derived from its surrounding sites. The conclusions derived from this study might help to understand more of the S-glutathionylation mechanism and guide the related experimental validation. For public access, SSGlu is freely accessible at http://59.73.198.144:8080/SSGlu/. Copyright © 2016 Elsevier Ltd. All rights reserved.

Identifying 5-methylcytosine sites in RNA sequence using composite encoding feature into Chou's PseKNC.

PubMed

Sabooh, M Fazli; Iqbal, Nadeem; Khan, Mukhtaj; Khan, Muslim; Maqbool, H F

2018-05-01

This study examines accurate and efficient computational method for identification of 5-methylcytosine sites in RNA modification. The occurrence of 5-methylcytosine (m 5 C) plays a vital role in a number of biological processes. For better comprehension of the biological functions and mechanism it is necessary to recognize m 5 C sites in RNA precisely. The laboratory techniques and procedures are available to identify m 5 C sites in RNA, but these procedures require a lot of time and resources. This study develops a new computational method for extracting the features of RNA sequence. In this method, first the RNA sequence is encoded via composite feature vector, then, for the selection of discriminate features, the minimum-redundancy-maximum-relevance algorithm was used. Secondly, the classification method used has been based on a support vector machine by using jackknife cross validation test. The suggested method efficiently identifies m 5 C sites from non- m 5 C sites and the outcome of the suggested algorithm is 93.33% with sensitivity of 90.0 and specificity of 96.66 on bench mark datasets. The result exhibits that proposed algorithm shown significant identification performance compared to the existing computational techniques. This study extends the knowledge about the occurrence sites of RNA modification which paves the way for better comprehension of the biological uses and mechanism. Copyright © 2018 Elsevier Ltd. All rights reserved.

Habitat selection in a rocky landscape: experimentally decoupling the influence of retreat site attributes from that of landscape features.

PubMed

Croak, Benjamin M; Pike, David A; Webb, Jonathan K; Shine, Richard

2012-01-01

Organisms selecting retreat sites may evaluate not only the quality of the specific shelter, but also the proximity of that site to resources in the surrounding area. Distinguishing between habitat selection at these two spatial scales is complicated by co-variation among microhabitat factors (i.e., the attributes of individual retreat sites often correlate with their proximity to landscape features). Disentangling this co-variation may facilitate the restoration or conservation of threatened systems. To experimentally examine the role of landscape attributes in determining retreat-site quality for saxicolous ectotherms, we deployed 198 identical artificial rocks in open (sun-exposed) sites on sandstone outcrops in southeastern Australia, and recorded faunal usage of those retreat sites over the next 29 months. Several landscape-scale attributes were associated with occupancy of experimental rocks, but different features were important for different species. For example, endangered broad-headed snakes (Hoplocephalus bungaroides) preferred retreat sites close to cliff edges, flat rock spiders (Hemicloea major) preferred small outcrops, and velvet geckos (Oedura lesueurii) preferred rocks close to the cliff edge with higher-than-average sun exposure. Standardized retreat sites can provide robust experimental data on the effects of landscape-scale attributes on retreat site selection, revealing interspecific divergences among sympatric taxa that use similar habitats.

Accuracy of gap analysis habitat models in predicting physical features for wildlife-habitat associations in the southwest U.S.

USGS Publications Warehouse

Boykin, K.G.; Thompson, B.C.; Propeck-Gray, S.

2010-01-01

Despite widespread and long-standing efforts to model wildlife-habitat associations using remotely sensed and other spatially explicit data, there are relatively few evaluations of the performance of variables included in predictive models relative to actual features on the landscape. As part of the National Gap Analysis Program, we specifically examined physical site features at randomly selected sample locations in the Southwestern U.S. to assess degree of concordance with predicted features used in modeling vertebrate habitat distribution. Our analysis considered hypotheses about relative accuracy with respect to 30 vertebrate species selected to represent the spectrum of habitat generalist to specialist and categorization of site by relative degree of conservation emphasis accorded to the site. Overall comparison of 19 variables observed at 382 sample sites indicated ???60% concordance for 12 variables. Directly measured or observed variables (slope, soil composition, rock outcrop) generally displayed high concordance, while variables that required judgments regarding descriptive categories (aspect, ecological system, landform) were less concordant. There were no differences detected in concordance among taxa groups, degree of specialization or generalization of selected taxa, or land conservation categorization of sample sites with respect to all sites. We found no support for the hypothesis that accuracy of habitat models is inversely related to degree of taxa specialization when model features for a habitat specialist could be more difficult to represent spatially. Likewise, we did not find support for the hypothesis that physical features will be predicted with higher accuracy on lands with greater dedication to biodiversity conservation than on other lands because of relative differences regarding available information. Accuracy generally was similar (>60%) to that observed for land cover mapping at the ecological system level. These patterns demonstrate resilience of gap analysis deductive model processes to the type of remotely sensed or interpreted data used in habitat feature predictions. ?? 2010 Elsevier B.V.

SU-F-R-33: Can CT and CBCT Be Used Simultaneously for Radiomics Analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luo, R; Wang, J; Zhong, H

2016-06-15

Purpose: To investigate whether CBCT and CT can be used in radiomics analysis simultaneously. To establish a batch correction method for radiomics in two similar image modalities. Methods: Four sites including rectum, bladder, femoral head and lung were considered as region of interest (ROI) in this study. For each site, 10 treatment planning CT images were collected. And 10 CBCT images which came from same site of same patient were acquired at first radiotherapy fraction. 253 radiomics features, which were selected by our test-retest study at rectum cancer CT (ICC>0.8), were calculated for both CBCT and CT images in MATLAB.more » Simple scaling (z-score) and nonlinear correction methods were applied to the CBCT radiomics features. The Pearson Correlation Coefficient was calculated to analyze the correlation between radiomics features of CT and CBCT images before and after correction. Cluster analysis of mixed data (for each site, 5 CT and 5 CBCT data are randomly selected) was implemented to validate the feasibility to merge radiomics data from CBCT and CT. The consistency of clustering result and site grouping was verified by a chi-square test for different datasets respectively. Results: For simple scaling, 234 of the 253 features have correlation coefficient ρ>0.8 among which 154 features haveρ>0.9 . For radiomics data after nonlinear correction, 240 of the 253 features have ρ>0.8 among which 220 features have ρ>0.9. Cluster analysis of mixed data shows that data of four sites was almost precisely separated for simple scaling(p=1.29 * 10{sup −7}, χ{sup 2} test) and nonlinear correction (p=5.98 * 10{sup −7}, χ{sup 2} test), which is similar to the cluster result of CT data (p=4.52 * 10{sup −8}, χ{sup 2} test). Conclusion: Radiomics data from CBCT can be merged with those from CT by simple scaling or nonlinear correction for radiomics analysis.« less

Meta-Analysis of DNA Tumor-Viral Integration Site Selection Indicates a Role for Repeats, Gene Expression and Epigenetics

PubMed Central

Doolittle-Hall, Janet M.; Cunningham Glasspoole, Danielle L.; Seaman, William T.; Webster-Cyriaque, Jennifer

2015-01-01

Oncoviruses cause tremendous global cancer burden. For several DNA tumor viruses, human genome integration is consistently associated with cancer development. However, genomic features associated with tumor viral integration are poorly understood. We sought to define genomic determinants for 1897 loci prone to hosting human papillomavirus (HPV), hepatitis B virus (HBV) or Merkel cell polyomavirus (MCPyV). These were compared to HIV, whose enzyme-mediated integration is well understood. A comprehensive catalog of integration sites was constructed from the literature and experimentally-determined HPV integration sites. Features were scored in eight categories (genes, expression, open chromatin, histone modifications, methylation, protein binding, chromatin segmentation and repeats) and compared to random loci. Random forest models determined loci classification and feature selection. HPV and HBV integrants were not fragile site associated. MCPyV preferred integration near sensory perception genes. Unique signatures of integration-associated predictive genomic features were detected. Importantly, repeats, actively-transcribed regions and histone modifications were common tumor viral integration signatures. PMID:26569308

Nationwide forestry applications program: Ten-Ecosystem Study (TES) site 5 report, Kershaw County, South Carolina, report 4

NASA Technical Reports Server (NTRS)

Dillman, R. D. (Principal Investigator)

1978-01-01

The author has identified the following significant results. The Kershaw County site, South Carolina, was selected to be representative of both the oak-pine ecosystem and the southeastern pine ecosystem. The following processing results have concluded that: (1) early spring LANDSAT data provide the best contrast between forest features; (2) level 2 forest features (softwood, hardwood, grassland, and water) can be classified with an accuracy of 70% + or - 5.7% at the 90% confidence level; (3) level 3 species classification was inconclusive; (4) temporal data did not provide a significant increase in classification accuracy of level 2 features, over single date classification to warrant the additional processing; and (5) training fields from only 10% of the site can be used to classify the entire site.

Improving ground-penetrating radar data in sedimentary rocks using deterministic deconvolution

USGS Publications Warehouse

Xia, J.; Franseen, E.K.; Miller, R.D.; Weis, T.V.; Byrnes, A.P.

2003-01-01

Resolution is key to confidently identifying unique geologic features using ground-penetrating radar (GPR) data. Source wavelet "ringing" (related to bandwidth) in a GPR section limits resolution because of wavelet interference, and can smear reflections in time and/or space. The resultant potential for misinterpretation limits the usefulness of GPR. Deconvolution offers the ability to compress the source wavelet and improve temporal resolution. Unlike statistical deconvolution, deterministic deconvolution is mathematically simple and stable while providing the highest possible resolution because it uses the source wavelet unique to the specific radar equipment. Source wavelets generated in, transmitted through and acquired from air allow successful application of deterministic approaches to wavelet suppression. We demonstrate the validity of using a source wavelet acquired in air as the operator for deterministic deconvolution in a field application using "400-MHz" antennas at a quarry site characterized by interbedded carbonates with shale partings. We collected GPR data on a bench adjacent to cleanly exposed quarry faces in which we placed conductive rods to provide conclusive groundtruth for this approach to deconvolution. The best deconvolution results, which are confirmed by the conductive rods for the 400-MHz antenna tests, were observed for wavelets acquired when the transmitter and receiver were separated by 0.3 m. Applying deterministic deconvolution to GPR data collected in sedimentary strata at our study site resulted in an improvement in resolution (50%) and improved spatial location (0.10-0.15 m) of geologic features compared to the same data processed without deterministic deconvolution. The effectiveness of deterministic deconvolution for increased resolution and spatial accuracy of specific geologic features is further demonstrated by comparing results of deconvolved data with nondeconvolved data acquired along a 30-m transect immediately adjacent to a fresh quarry face. The results at this site support using deterministic deconvolution, which incorporates the GPR instrument's unique source wavelet, as a standard part of routine GPR data processing. ?? 2003 Elsevier B.V. All rights reserved.

Stand Structural Controls on Evapotranspiration in Native and Invaded Tropical Montane Cloud Forest in Hawai'i

NASA Astrophysics Data System (ADS)

Giambelluca, T. W.; Delay, J. K.; Asner, G. P.; Martin, R. E.; Nullet, M. A.; Huang, M.; Mudd, R. G.; Takahashi, M.

2008-12-01

Tropical montane cloud forests (TMCFs) in Hawai'i are important zones of water input and stores of critically important native plant and animal species. Invasion by alien tree species threatens these forests and may alter the hydrological services they provide. At two TMCF sites in Hawai'i, one within native Metrosideros polymorpha forest and the other at a site heavily invaded by Psidium cattleianum, we are conducting measurements of stand-level evapotranspiration (ET), transpiration (using sapflow techniques), energy balance, and related processes. Previously presented results showed that ET as a function of available energy was 27% higher at the invaded site than the native site, with the difference rising to 53% during dry- canopy periods. In this presentation, mechanisms for the observed higher ET rate at the invaded site are explored. The difference in measured xylem flow velocities of native and alien trees cannot explain the observed stand level ET difference. Tree basal area is lower at the invaded site than the native site, again contrary to the ET difference. However, the alien trees have much smaller stem diameters, on average, than the native trees, with little or no heartwood. Hence, the cross-sectional xylem area is much greater in the invaded stand, facilitating higher transpiration rates. These results demonstrate the importance of stand structural controls on ET and raise questions about whether higher ET is a transient feature of the succession or a persistent characteristic of invasive trees.

Conversion of the Bayou Choctaw geological site characterization report to a three-dimensional model.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stein, Joshua S.; Rautman, Christopher Arthur

2004-02-01

The geologic model implicit in the original site characterization report for the Bayou Choctaw Strategic Petroleum Reserve Site near Baton Rouge, Louisiana, has been converted to a numerical, computer-based three-dimensional model. The original site characterization model was successfully converted with minimal modifications and use of new information. The geometries of the salt diapir, selected adjacent sedimentary horizons, and a number of faults have been modeled. Models of a partial set of the several storage caverns that have been solution-mined within the salt mass are also included. Collectively, the converted model appears to be a relatively realistic representation of the geologymore » of the Bayou Choctaw site as known from existing data. A small number of geometric inconsistencies and other problems inherent in 2-D vs. 3-D modeling have been noted. Most of the major inconsistencies involve faults inferred from drill hole data only. Modem computer software allows visualization of the resulting site model and its component submodels with a degree of detail and flexibility that was not possible with conventional, two-dimensional and paper-based geologic maps and cross sections. The enhanced visualizations may be of particular value in conveying geologic concepts involved in the Bayou Choctaw Strategic Petroleum Reserve site to a lay audience. A Microsoft WindowsTM PC-based viewer and user-manipulable model files illustrating selected features of the converted model are included in this report.« less

Anisakiasis Causing Acute Dysentery in Malaysia.

PubMed

Amir, Amirah; Ngui, Romano; Ismail, Wan Hafiz Wan; Wong, Kum T; Ong, Jaxinthe S K; Lim, Yvonne A L; Lau, Yee-Ling; Mahmud, Rohela

2016-08-03

Human anisakiasis is a zoonosis acquired by eating raw or undercooked infected seafood. Herein, we report a case of acute dysentery caused by anisakiasis in a 64-year-old man in Malaysia. A colonoscopy was performed and a nematode larva was found penetrating the mucosa of the ascending colon. Bleeding was observed at the site of penetration. Y-shaped lateral epidermal cords were seen from the cross section of the worm, which is a prominent feature of Anisakis larva. Molecular analysis using polymerase chain reaction of cytochrome oxidase 2 (cox2) gene confirmed the specimen to be larva of Anisakis simplex. © The American Society of Tropical Medicine and Hygiene.

The histological lesions of Trichophyton mentagrophytes var erinacei infection in dogs.

PubMed

Fairley, R A

2001-04-01

A retrospective study of the histological features of four cases of canine Trichophyton mentagrophytes var erinacei infection is reported. In all four dogs the initial lesions affected the dorsal muzzle and in two dogs the lesions spread to more distant sites on the body. Clinically, the lesions were characterized by scaling, crusting and hair loss. Histologically, the main lesions were characterized by acanthosis, epidermal, ostial and infundibular hyperkeratosis, serocellular crusting, mural folliculitis and furunculosis. Fungal hyphae were usually sparse and often difficult to see in haematoxylin and eosin stained sections. When visible they were seen in the epidermal, ostial and infundibular scale and, less frequently, within hair shafts.

Poster - 18: New features in EGSnrc for photon cross sections

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ali, Elsayed; Mainegra-Hing, Ernesto; Rogers, Davi

2016-08-15

Purpose: To implement two new features in the EGSnrc Monte Carlo system. The first is an option to account for photonuclear attenuation, which can contribute a few percent to the total cross section at the higher end of the energy range of interest to medical physics. The second is an option to use exact NIST XCOM photon cross sections. Methods: For the first feature, the photonuclear total cross sections are generated from the IAEA evaluated data. In the current, first-order implementation, after a photonuclear event, there is no energy deposition or secondary particle generation. The implementation is validated against deterministicmore » calculations and experimental measurements of transmission signals. For the second feature, before this work, if the user explicitly requested XCOM photon cross sections, EGSnrc still used its own internal incoherent scattering cross sections. These differ by up to 2% from XCOM data between 30 keV and 40 MeV. After this work, exact XCOM incoherent scattering cross sections are an available option. Minor interpolation artifacts in pair and triplet XCOM cross sections are also addressed. The default for photon cross section in EGSnrc is XCOM except for the new incoherent scattering cross sections, which have to be explicitly requested. The photonuclear, incoherent, pair and triplet data from this work are available for elements and compounds for photon energies from 1 keV to 100 GeV. Results: Both features are implemented and validated in EGSnrc.Conclusions: The two features are part of the standard EGSnrc distribution as of version 4.2.3.2.« less

Perimeter intrusion detection and assessment system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eaton, M.J.; Jacobs, J.; McGovern, D.E.

1977-11-01

To obtain an effective perimeter intrusion detection system requires careful sensor selection, procurement, and installation. The selection process involves a thorough understanding of the unique site features and how these features affect the performance of each type of sensor. It is necessary to develop procurement specifications to establish acceptable sensor performance limits. Careful explanation and inspection of critical installation dimensions is required during on-site construction. The implementation of these activities at a particular site is discussed.

TargetM6A: Identifying N6-Methyladenosine Sites From RNA Sequences via Position-Specific Nucleotide Propensities and a Support Vector Machine.

PubMed

Li, Guang-Qing; Liu, Zi; Shen, Hong-Bin; Yu, Dong-Jun

2016-10-01

As one of the most ubiquitous post-transcriptional modifications of RNA, N 6 -methyladenosine ( [Formula: see text]) plays an essential role in many vital biological processes. The identification of [Formula: see text] sites in RNAs is significantly important for both basic biomedical research and practical drug development. In this study, we designed a computational-based method, called TargetM6A, to rapidly and accurately target [Formula: see text] sites solely from the primary RNA sequences. Two new features, i.e., position-specific nucleotide/dinucleotide propensities (PSNP/PSDP), are introduced and combined with the traditional nucleotide composition (NC) feature to formulate RNA sequences. The extracted features are further optimized to obtain a much more compact and discriminative feature subset by applying an incremental feature selection (IFS) procedure. Based on the optimized feature subset, we trained TargetM6A on the training dataset with a support vector machine (SVM) as the prediction engine. We compared the proposed TargetM6A method with existing methods for predicting [Formula: see text] sites by performing stringent jackknife tests and independent validation tests on benchmark datasets. The experimental results show that the proposed TargetM6A method outperformed the existing methods for predicting [Formula: see text] sites and remarkably improved the prediction performances, with MCC = 0.526 and AUC = 0.818. We also provided a user-friendly web server for TargetM6A, which is publicly accessible for academic use at http://csbio.njust.edu.cn/bioinf/TargetM6A.

Geologic features of dam sites in the Nehalem, Rogue, and Willamette River basins, Oregon, 1935-37

USGS Publications Warehouse

Piper, A.M.

1947-01-01

The present report comprises brief descriptions of geologic features at 19 potential dam sites in the Nehalem, Rogue, and Willamette River basins in western Oregon. The topography of these site and of the corresponding reservoir site was mapped in 1934-36 under an allocation of funds, by the Public Works Administration for river-utilization surveys by the Conservation Branch of the United States Geological Survey. The field program in Oregon has been under the immediate charge of R. O. Helland. The 19 dam sites are distributed as follows: three on the Nehalem River, on the west or Pacific slope of the Oregon Coast range; four on Little Butte Creek and two on Evans Creek, tributaries of the Rogue River in the eastern part of the Klamath Mountains; four on the South and Middle Santiam Rivers, tributaries of the Willamette River from the west slope of the Cascade mountains; and six on tributaries of the Willamette River from the east slope of the Coast Range. Except in the Evans Creek basin, all the rocks in the districts that were studied are of comparatively late geological age. They include volcanic rocks, crystalline rocks of several types, marine and nonmarine sedimentary rocks, and recent stream deposits. The study of geologic features has sought to estimate the bearing power and water-tightness of the rocks at each dam site, also to place rather broad limits on the type of dam for which the respective sites seem best suited. It was not considered necessary to study the corresponding reservoir sites in detail for excessive leakage appears to be unlikely. Except at three of the four site in the Santiam River basin, no test pits have been dug nor exploratory holes drilled, so that geologic features have been interpreted wholly from natural outcrops and from highway and railroad cuts. Because these outcrops and cuts are few, many problems related to the construction and maintenance of dams can not be answered at the this time and all critical features of the sites should be thoroughly explored by test pits and drilled holes before any dam is designed. This applied especially to sites in the Nehalem and Willamette River basins where commonly the cover of timber and brush is dense and the rocks are rather deeply weathered. On the Middle Santiam and South Santiam Rivers, the Cascadia, Greenpeter, and Sweet Home sits have been studies intensively by the United States Engineer Department, whose work included exploration by diamond-drill holes and test pits. Their conclusions as to geologic features are given in a report by McKitrick and have been reviewed by the writer. Data from this source have been used freely in the discussion of the respective sites in this report. The probability of destructive earthquakes in the region appears to be small but is not negligible. Prudence suggests that any high dam should embody features to assure stability against moderately strong earth motions.

Site Plan & Site Section of Citrus Landscape (Showing Relationship ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

Site Plan & Site Section of Citrus Landscape (Showing Relationship of Victoria Avenue to Citrus Groves) - Arlington Heights Citrus Landscape, Southwestern portion of city of Riverside, Riverside, Riverside County, CA

Single-stage endovascular treatment of subarachnoid hemorrhage related to bilateral vertebral artery dissecting aneurysms

PubMed Central

Zhao, Wen-Yuan; Zhao, Kai-Jun; Huang, Qing-Hai; Xu, Yi; Hong, Bo

2015-01-01

Objective Treatment of bilateral vertebral artery dissecting aneurysms presenting with subarachnoid hemorrhage remains challenging as bilateral deconstructive procedures may not be feasible. In this case series, we describe our approach to their management and review the pertinent literature. Method A retrospective review of our prospectively collected database on aneurysms was performed to identify all patients with acute subarachnoid hemorrhage in the setting of bilateral intradural vertebral artery dissections (VAD) encompassing a period from January 2000 and March 2012. Result Four patients (M/F = 2/2; mean age, 51.5 years) were identified. In two cases the site of rupture could be identified by angiographic and cross-sectional features; in these patients deconstructive treatment (proximal obliteration or trapping) of the ruptured site and reconstructive treatment of the unruptured site (using stents and coils) were performed. In the patients in whom the site of hemorrhage could not be determined, bilateral reconstructive treatment was performed. No treatment-related complications were encountered. Modified Rankin scale scores were 0–1 at discharge, and on follow-up (mean 63 months), no recurrence, in-stent thrombosis or new neurological deficits were encountered. Conclusion We believe that single-stage treatment in patients with bilateral VAD is indicated: If the site of hemorrhage can be determined, we prefer deconstructive treatment on the affected site and reconstructive treatment on the non-affected site to prevent increased hemodynamic stress on the unruptured but diseased wall. If the site of dissection cannot be determined, we prefer bilateral reconstructive treatment to avoid increasing hemodynamic stress on the potentially untreated acute hemorrhagic dissection. PMID:26686384

Activation amplitude and temporal synchrony among back extensor and abdominal muscles during a controlled transfer task: comparison of men and women.

PubMed

Hubley-Kozey, Cheryl L; Butler, Heather L; Kozey, John W

2012-08-01

Muscle synergies are important for spinal stability, but few studies examine temporal responses of spinal muscles to dynamic perturbations. This study examined activation amplitudes and temporal synergies among compartments of the back extensor and among abdominal wall muscles in response to dynamic bidirectional moments of force. We further examined whether responses were different between men and women. 19 women and 18 men performed a controlled transfer task. Surface electromyograms from bilateral sites over 6 back extensor compartments and 6 abdominal wall muscle sites were analyzed using principal component analysis. Key features were extracted from the measured electromyographic waveforms capturing amplitude and temporal variations among muscle sites. Three features explained 97% of the variance. Scores for each feature were computed for each measured waveform and analysis of variance found significant (p<.05) muscle main effects and a sex by muscle interaction. For the back extensors, post hoc analysis revealed that upper and more medial sites were recruited to higher amplitudes, medial sites responded to flexion moments, and the more lateral sites responded to lateral flexion moments. Women had more differences among muscle sites than men for the lateral flexion moment feature. For the abdominal wall muscles the oblique muscles responded with synergies related to fiber orientation, with women having higher amplitudes and more responsiveness to the lateral flexion moment than men. Synergies between the abdominal and back extensor sites as the moment demands change are discussed. These findings illustrate differential activation among erector spinae compartments and abdominal wall muscle sites supporting a highly organized pattern of response to bidirectional external moments with asynchronies more apparent in women. Copyright © 2012 Elsevier B.V. All rights reserved.

Site Plan & Site Section of Citrus Landscape (Showing Relationship ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

Site Plan & Site Section of Citrus Landscape (Showing Relationship of Groves & Irrigation System to Grove Canal) - Arlington Heights Citrus Landscape, Southwestern portion of city of Riverside, Riverside, Riverside County, CA

A Tephra Database With an Intelligent Correlation System, Mono-Inyo Volcanic Chain, CA

NASA Astrophysics Data System (ADS)

Bursik, M.; Rogova, G.

2004-12-01

We are assembling a web-accessible, relational database of information on past eruptions of the Mono-Inyo volcanic chain, eastern California. The PostgreSQL database structure follows the North American Data Model and CordLink. The database allows us to extract the features diagnostic of particular pyroclastic layers, as well as lava domes and flows. The features include depth in the section, layer thickness and internal stratigraphy, mineral assemblage, major and trace element composition, tephra componentry and granulometry, and radiocarbon age. Our working hypotheses are that 1) the database will prove useful for unraveling the complex recent volcanic history of the Mono-Inyo chain 2) aided by the use of an intelligent correlation system integrated into the database system. The Mono-Inyo chain consists of domes, craters and flows that stretch for 50 km north-south, subparallel to the Sierran range front fault system. Almost all eruptions within the chain probably occurred less than 50,000 years ago. Because of the variety of magma and eruption types, and the migration of source regions in time and space, it is nontrivial to discern patterns of behaviour. We have explored the use of multiple artificial neural networks combined within the framework of the Dempster-Shafer theory of evidence to construct a hybrid information processing system as an aid in the correlation of Mono-Inyo pyroclastic layers. It is hoped that such a system could provide information useful to discerning eruptive patterns that would otherwise be difficult to sort and categorize. In a test case on tephra layers at known sites, the intelligent correlation system was able to categorize observations correctly 96% of the time. In a test case with layers at one unknown site, and using a pairwise comparison of the unknown site with the known sites, a one-to-one correlation between the unknown site and the known sites was found to sometimes be poor. Such a result could be used to aid a stratigrapher in rethinking or questioning a proposed correlation. This rethinking might not happen without the input from the intelligent system.

Presence of pro-tobacco messages on the Web.

PubMed

Hong, Traci; Cody, Michael J

2002-01-01

Ignored in the finalized Master Settlement Agreement (National Association of Attorneys General, 1998), the unmonitored, unregulated World Wide Web (Web) can operate as a major vehicle for delivering pro-tobacco messages, images, and products to millions of young consumers. A content analysis of 318 randomly sampled pro-tobacco Web sites revealed that tobacco has a pervasive presence on the Web, especially on e-commerce sites and sites featuring hobbies, recreation, and "fetishes." Products can be ordered online on nearly 50% of the sites, but only 23% of the sites included underage verification. Further, only 11% of these sites contain health warnings. Instead, pro-tobacco sites frequently associate smoking with "glamorous" and "alternative" lifestyles, and with images of young males and young (thin, attractive) females. Finally, many of the Web sites offered interactive site features that are potentially appealing to young Web users. Recommendations for future research and counterstrategies are discussed.

Genomic characterisation of Arachis porphyrocalyx (Valls & C.E. Simpson, 2005) (Leguminosae): multiple origin of Arachis species with x = 9

PubMed Central

Celeste, Silvestri María; Ortiz, Alejandra Marcela; Robledo, Germán Ariel; Valls, José Francisco Montenegro; Lavia, Graciela Inés

2017-01-01

Abstract The genus Arachis Linnaeus, 1753 comprises four species with x = 9, three belong to the section Arachis: Arachis praecox (Krapov. W.C. Greg. & Valls, 1994), Arachis palustris (Krapov. W.C. Greg. & Valls, 1994) and Arachis decora (Krapov. W.C. Greg. & Valls, 1994) and only one belongs to the section Erectoides: Arachis porphyrocalyx (Valls & C.E. Simpson, 2005). Recently, the x = 9 species of section Arachis have been assigned to G genome, the latest described so far. The genomic relationship of Arachis porphyrocalyx with these species is controversial. In the present work, we carried out a karyotypic characterisation of Arachis porphyrocalyx to evaluate its genomic structure and analyse the origin of all x = 9 Arachis species. Arachis porphyrocalyx showed a karyotype formula of 14m+4st, one pair of A chromosomes, satellited chromosomes type 8, one pair of 45S rDNA sites in the SAT chromosomes, one pair of 5S rDNA sites and pericentromeric C-DAPI+ bands in all chromosomes. Karyotype structure indicates that Arachis porphyrocalyx does not share the same genome type with the other three x = 9 species and neither with the remaining Erectoides species. Taking into account the geographic distribution, morphological and cytogenetic features, the origin of species with x = 9 of the genus Arachis cannot be unique; instead, they originated at least twice in the evolutionary history of the genus. PMID:28919947

Liquefaction record of the great 1934 earthquake predecessors from the north Bihar alluvial plains of India

NASA Astrophysics Data System (ADS)

Rajendran, C. P.; John, Biju; Rajendran, Kusala; Sanwal, Jaishri

2016-07-01

The great 1934 Himalayan earthquake of moment magnitude (Mw) 8.1 generated a large zone of ground failure and liquefaction in north Bihar, India, in addition to the earthquakes of 1833 (Mw ~7.7) and 1988 (Mw 6.7) that have also impacted this region. Here, we present the results of paleoliquefaction investigations from four sites in the plains of north Bihar and one in eastern Uttar Pradesh. The liquefaction features generated by successive earthquakes were dated at AD 829-971, 886-1090, 907-1181, 1130-1376, 1112-1572, 1492-1672, 1733-1839, and 1814-1854. One of the liquefaction events dated at AD 829-971, 886-1090, and 907-1181 may correlate with the great earthquake of AD ~1100, recognized in an earlier study from the sections across the frontal thrust in central eastern Nepal. Two late medieval liquefaction episodes of AD 1130-1376 and 1492-1672 were also exposed in our sites. The sedimentary sections also revealed sandblows that can be attributed to the 1833 earthquake, a lesser magnitude event compared to the 1934. Liquefactions triggered by the 1934 and 1988 earthquakes were evident within the topmost level in some sections. The available data lead us to conjecture that a series of temporally close spaced earthquakes of both strong and large types, not including the infrequent great earthquakes like the 1934, have affected the Bihar Plains during the last 1500 years with a combined recurrence interval of 124 ± 63 years.

Invasion of American bullfrogs along the Yellowstone River

USGS Publications Warehouse

Sepulveda, Adam; Layhee, Megan J.; Stagliano, Dave; Chaffin, Jake; Begley, Allison; Maxell, Bryce A.

2015-01-01

The American bullfrog (Lithobates catesbeianus) is a globally distributed invasive species that was introduced to the Yellowstone River floodplain of Montana. Knowledge about floodplain habitat features that allow for bullfrog persistence and spread will help identify effective control strategies. We used field surveys in 2010, 2012 and 2013 to describe bullfrog spread in the Yellowstone River floodplain and the habitat features that are associated with bullfrog occupancy and colonization. Bullfrogs in our study area expanded from ~ 60 km in 2010 to 106 km in 2013, and are spreading to up- and downstream habitats. The number of breeding sites (i.e., presence of bullfrog eggs or larvae) increased from 12 sites in 2010 to 45 sites in 2013. We found that bullfrogs were associated with deeper waters, emergent vegetation and public-access sites, which are habitat features that characterize permanent waters and describe human-mediated introductions. Control strategies that reduce the hydroperiod of breeding sites may help to limit bullfrog persistence and spread, while an increase in public outreach and education may help prevent further bullfrog introductions at public-access sites.

Robust Segmentation of Planar and Linear Features of Terrestrial Laser Scanner Point Clouds Acquired from Construction Sites.

PubMed

Maalek, Reza; Lichti, Derek D; Ruwanpura, Janaka Y

2018-03-08

Automated segmentation of planar and linear features of point clouds acquired from construction sites is essential for the automatic extraction of building construction elements such as columns, beams and slabs. However, many planar and linear segmentation methods use scene-dependent similarity thresholds that may not provide generalizable solutions for all environments. In addition, outliers exist in construction site point clouds due to data artefacts caused by moving objects, occlusions and dust. To address these concerns, a novel method for robust classification and segmentation of planar and linear features is proposed. First, coplanar and collinear points are classified through a robust principal components analysis procedure. The classified points are then grouped using a new robust clustering method, the robust complete linkage method. A robust method is also proposed to extract the points of flat-slab floors and/or ceilings independent of the aforementioned stages to improve computational efficiency. The applicability of the proposed method is evaluated in eight datasets acquired from a complex laboratory environment and two construction sites at the University of Calgary. The precision, recall, and accuracy of the segmentation at both construction sites were 96.8%, 97.7% and 95%, respectively. These results demonstrate the suitability of the proposed method for robust segmentation of planar and linear features of contaminated datasets, such as those collected from construction sites.

Robust Segmentation of Planar and Linear Features of Terrestrial Laser Scanner Point Clouds Acquired from Construction Sites

PubMed Central

Maalek, Reza; Lichti, Derek D; Ruwanpura, Janaka Y

2018-01-01

Automated segmentation of planar and linear features of point clouds acquired from construction sites is essential for the automatic extraction of building construction elements such as columns, beams and slabs. However, many planar and linear segmentation methods use scene-dependent similarity thresholds that may not provide generalizable solutions for all environments. In addition, outliers exist in construction site point clouds due to data artefacts caused by moving objects, occlusions and dust. To address these concerns, a novel method for robust classification and segmentation of planar and linear features is proposed. First, coplanar and collinear points are classified through a robust principal components analysis procedure. The classified points are then grouped using a new robust clustering method, the robust complete linkage method. A robust method is also proposed to extract the points of flat-slab floors and/or ceilings independent of the aforementioned stages to improve computational efficiency. The applicability of the proposed method is evaluated in eight datasets acquired from a complex laboratory environment and two construction sites at the University of Calgary. The precision, recall, and accuracy of the segmentation at both construction sites were 96.8%, 97.7% and 95%, respectively. These results demonstrate the suitability of the proposed method for robust segmentation of planar and linear features of contaminated datasets, such as those collected from construction sites. PMID:29518062

High Precision Prediction of Functional Sites in Protein Structures

PubMed Central

Buturovic, Ljubomir; Wong, Mike; Tang, Grace W.; Altman, Russ B.; Petkovic, Dragutin

2014-01-01

We address the problem of assigning biological function to solved protein structures. Computational tools play a critical role in identifying potential active sites and informing screening decisions for further lab analysis. A critical parameter in the practical application of computational methods is the precision, or positive predictive value. Precision measures the level of confidence the user should have in a particular computed functional assignment. Low precision annotations lead to futile laboratory investigations and waste scarce research resources. In this paper we describe an advanced version of the protein function annotation system FEATURE, which achieved 99% precision and average recall of 95% across 20 representative functional sites. The system uses a Support Vector Machine classifier operating on the microenvironment of physicochemical features around an amino acid. We also compared performance of our method with state-of-the-art sequence-level annotator Pfam in terms of precision, recall and localization. To our knowledge, no other functional site annotator has been rigorously evaluated against these key criteria. The software and predictive models are incorporated into the WebFEATURE service at http://feature.stanford.edu/wf4.0-beta. PMID:24632601

Web sites selling cigarettes: how many are there in the USA and what are their sales practices?

PubMed

Ribisl, K M; Kim, A E; Williams, R S

2001-12-01

To estimate the number and geographic location of web sites selling cigarettes in the USA, and to examine their sales and marketing practices. Comprehensive searches were conducted using four keyword terms and five popular internet search engines, supplemented by sites identified in a news article. Over 1800 sites were examined to identify 88 internet cigarette vendors. Trained raters examined the content of each site using a standardised coding instrument to assess geographic location, presence of warnings, products sold, and promotional strategies. USA. Internet cigarette vendors were located in 23 states. Nearly half (n = 43) were located in New York state, and many were in tobacco producing states with low cigarette excise taxes. Indian reservations housed 49 of the 88 sites. Only 28.4% of sites featured the US Surgeon General's health warnings and 81.8% featured minimum age of sale warnings. Nearly all sites (96.6%) sold premium or value brand cigarettes, 21.6% sold duty-free Marlboros, and 8.0% sold bidis. Approximately one third featured special promotional programmes. Internet cigarette vendors present new regulatory and enforcement challenges for tobacco control advocates because of the difficulty in regulating internet content and because many vendors are on Indian reservations.

Clinical and Other Risk Indicators for Early Periodontitis in Adults

PubMed Central

Tanner, Anne C.R.; Kent, Ralph; Van Dyke, Thomas; Sonis, Steven T.; Murray, Lora A.

2005-01-01

Background Periodontal diseases affect over half the adults in the U.S., disproportionately affecting minority populations. Periodontitis can be treated in early stages, but it is not clear what features indicate, or could be risk factors for, early stages of periodontal attachment loss. This study aimed to evaluate associations between clinical and other risk indicators of early periodontitis. Methods A cross-sectional evaluation of 225 healthy and early periodontitis adults aged 20 to 40 years was performed. Clinical measurements, demographic information, and smoking histories were recorded. Analyses evaluated demographic and clinical associations with health and early periodontitis disease categories and periodontal attachment loss. Patterns of attachment loss at interproximal and buccal/lingual sites were evaluated. Results Subject age, plaque, and measures of gingivitis exhibited associations with attachment loss and probing depth. More periodontal attachment loss was detected in African-American and Hispanic subjects compared to Asian and Caucasian subjects. Smoking history was associated with attachment loss. At interproximal sites, lower molars most frequently had attachment loss, whereas at buccal/lingual sites, higher proportions of lower bicuspid teeth demonstrated attachment loss compared with other sites. Conclusions In this study of subjects with minimal attachment loss, gingival inflammation was associated with early periodontitis. Lower molar interproximal sites were frequently associated with interproximal attachment loss, whereas lower bicuspid teeth were at risk for gingival recession on buccal surfaces. PMID:15857098

Predict and Analyze Protein Glycation Sites with the mRMR and IFS Methods

PubMed Central

Gu, Wenxiang; Zhang, Wenyi; Wang, Jianan

2015-01-01

Glycation is a nonenzymatic process in which proteins react with reducing sugar molecules. The identification of glycation sites in protein may provide guidelines to understand the biological function of protein glycation. In this study, we developed a computational method to predict protein glycation sites by using the support vector machine classifier. The experimental results showed that the prediction accuracy was 85.51% and an overall MCC was 0.70. Feature analysis indicated that the composition of k-spaced amino acid pairs feature contributed the most for glycation sites prediction. PMID:25961025

Taxonomic overview and tusk growth analyses of Ziegler Reservoir proboscideans

NASA Astrophysics Data System (ADS)

Fisher, Daniel C.; Cherney, Michael D.; Newton, Cody; Rountrey, Adam N.; Calamari, Zachary T.; Stucky, Richard K.; Lucking, Carol; Petrie, Lesley

2014-11-01

At an altitude of 2705 m in the Colorado Rockies (USA), the Ziegler Reservoir fossil site gives a rare look at a high-elevation ecosystem from the late Pleistocene (especially MIS 5) of North America. Remains of more than four mammoths and about 35 mastodons dominate the macrofossil assemblage. Mammoth remains are attributed to Mammuthus columbi, and mastodon remains are referred to the well-known, continent-wide Mammut americanum. Mastodon remains occur within and between several lake-margin slump deposits. Their deposition must therefore have occurred as events that were to some degree separate in time. We treat the mastodon assemblage in each stratigraphic unit as a source of information on environmental conditions during the lives of these individuals. Mastodon mandibular tusks are abundant at the site and represent both males and females, from calves to full-grown adults. This study presents the first attempt to use microCT, thin-section, and isotope records from mandibular tusks to reconstruct features of life-history. We recognize an up-section trend in δ18O profiles toward higher values, suggestive of warmer temperatures. Throughout this sequence, mastodon growth histories show low mean sensitivities suggestive of low levels of environmental stress. This work helps frame expectations for assessing environmental pressures on terminal Pleistocene populations.

[Analysis of 163 rib fractures by imaging examination].

PubMed

Song, Tian-fu; Wang, Chao-chao

2014-12-01

To explore the applications of imaging examination on rib fracture sites in forensic identification. Features including the sites, numbers of the processed imaging examination and the first radiological technology at diagnosis in 56 cases of rib fractures from 163 injuries were retrospectively analyzed. The detection rate of the rib fractures within 14 days was 65.6%. The initial detection rate of anterior rib fracture proceeded by X-ray was 76.2%, then 90.5% detected at a second time X-ray, while the detection rate of CT was 66.7% and 80.0%, respectively. The initial detec- tion rate of rib fracture in axillary section proceeded by X-ray was 27.6%, then 58.6% detected at a second time X-ray, while the detection rate of CT was 54.3% and 80.4%, respectively. The initial detection rate of posterior rib fracture proceeded by X-ray was 63.6%, then 81.8% detected at a second time X-ray, while the detection rate of CT was 50.0% and 70.0%, respectively. It is important to pay attention to the use of combined imaging examinations and the follow-up results. In the cases of suspicious for rib fracture in axillary section, CT examination is suggested in such false X-ray negative cases.

Outstanding diversity of heritage features in large geological bodies: The Gachsaran Formation in southwest Iran

NASA Astrophysics Data System (ADS)

Habibi, Tahereh; Ruban, Dmitry A.

2017-09-01

The ideas of geological heritage and geological diversity have become very popular in the modern science. These are usually applied to geological domains or countries, provinces, districts, etc. Additionally, it appears to be sensible to assess heritage value of geological bodies. The review of the available knowledge and the field investigation of the Gachsaran Formation (lower Miocene) in southwest Iran permit to assign its features and the relevant phenomena to as much as 10 geological heritage types, namely stratigraphical, sedimentary, palaeontological, palaeogeographical, geomorphological, hydrogeological, engineering, structural, economical, and geohistorical types. The outstanding diversity of the features of this formation determines its high heritage value and the national rank. The geological heritage of the Gachsaran Formation is important to scientists, educators, and tourists. The Papoon and Abolhaiat sections of this formation are potential geological heritage sites, although these do not represent all above-mentioned types. The large territory, where the Gachsaran Formation outcrop, has a significant geoconservation and geotourism potential, and further inventory of geosites on this territory is necessary. Similar studies of geological bodies in North Africa and the Middle East can facilitate better understanding of the geological heritage of this vast territory.

Acoustic measurement and morphological features of organic sediment deposits in combined sewer networks.

PubMed

Carnacina, Iacopo; Larrarte, Frédérique; Leonardi, Nicoletta

2017-04-01

The performance of sewer networks has important consequences from an environmental and social point of view. Poor functioning can result in flood risk and pollution at a large scale. Sediment deposits forming in sewer trunks might severely compromise the sewer line by affecting the flow field, reducing cross-sectional areas, and increasing roughness coefficients. In spite of numerous efforts, the morphological features of these depositional environments remain poorly understood. The interface between water and sediment remains inefficiently identified and the estimation of the stock of deposit is frequently inaccurate. In part, this is due to technical issues connected to difficulties in collecting accurate field measurements without disrupting existing morphologies. In this paper, results from an extensive field campaign are presented; during the campaign a new survey methodology based on acoustic techniques has been tested. Furthermore, a new algorithm for the detection of the soil-water interface, and therefore for the correct esteem of sediment stocks is proposed. Finally, results in regard to bed topography, and morphological features at two different field sites are presented and reveal that a large variability in bed forms is present along sewer networks. Copyright © 2017 Elsevier Ltd. All rights reserved.

Web sites selling cigarettes: how many are there in the USA and what are their sales practices?

PubMed Central

Ribisl, K.; Kim, A.; Williams, R.

2001-01-01

OBJECTIVES—To estimate the number and geographic location of web sites selling cigarettes in the USA, and to examine their sales and marketing practices.
METHODS—Comprehensive searches were conducted using four keyword terms and five popular internet search engines, supplemented by sites identified in a news article. Over 1800 sites were examined to identify 88 internet cigarette vendors.
MEASURES—Trained raters examined the content of each site using a standardised coding instrument to assess geographic location, presence of warnings, products sold, and promotional strategies.
SETTING—USA.
RESULTS—Internet cigarette vendors were located in 23 states. Nearly half (n = 43) were located in New York state, and many were in tobacco producing states with low cigarette excise taxes. Indian reservations housed 49 of the 88 sites. Only 28.4% of sites featured the US Surgeon General's health warnings and 81.8% featured minimum age of sale warnings. Nearly all sites (96.6%) sold premium or value brand cigarettes, 21.6% sold duty-free Marlboros, and 8.0% sold bidis. Approximately one third featured special promotional programmes.
CONCLUSIONS—Internet cigarette vendors present new regulatory and enforcement challenges for tobacco control advocates because of the difficulty in regulating internet content and because many vendors are on Indian reservations.


Keywords: youth access; internet; web sites; policy PMID:11740027

Region 9 NPL Sites (Superfund Sites 2013)

EPA Pesticide Factsheets

NPL site POINT locations for the US EPA Region 9. NPL (National Priorities List) sites are hazardous waste sites that are eligible for extensive long-term cleanup under the Superfund program. Eligibility is determined by a scoring method called Hazard Ranking System. Sites with high scores are listed on the NPL. The majority of the locations are derived from polygon centroids of digitized site boundaries. The remaining locations were generated from address geocoding and digitizing. Area covered by this data set include Arizona, California, Nevada, Hawaii, Guam, American Samoa, Northern Marianas and Trust Territories. Attributes include NPL status codes, NPL industry type codes and environmental indicators. Related table, NPL_Contaminants contains information about contaminated media types and chemicals. This is a one-to-many relate and can be related to the feature class using the relationship classes under the Feature Data Set ENVIRO_CONTAMINANT.

Archaeological Investigations in the Gainesville Lake Area of the Tennessee-Tombigbee Waterway. Volume I. The Gainesville Lake Area Excavations.

DTIC Science & Technology

1981-01-01

97 71. Site 1Pi61, Removing Trees ........ .................. . 97 72. Site lPi6l, Testing the Midden ....... ................ . 97 6...the use of plant and animal species changes through time. Volume IV also describes the human skeletal remains from all excavated sites and discusses the...Gainesville Lake area were cultural features. A few 5 features resulted from forces other than human behavior ( tree roots, ro- dent burrows, erosional gullies

Elephants (and extinct relatives) as earth-movers and ecosystem engineers

NASA Astrophysics Data System (ADS)

Haynes, Gary

2012-07-01

Modern African elephants affect habitats and ecosystems in significant ways. They push over trees to feed on upper branches and often peel large sections of bark to eat. These destructive habits sometimes transform woody vegetation into grasslands. Systems of elephant trails may be used and re-used for centuries, and create incised features that extend for many kilometers on migration routes. Elephants, digging in search of water or mineral sediments, may remove several cubic meters of sediments in each excavation. Wallowing elephants may remove up to a cubic meter of pond sediments each time they visit water sources. Accumulations of elephant dung on frequented land surfaces may be over 2 kg per square meter. Elephant trampling, digging, and dust-bathing may reverse stratigraphy at archeological localities. This paper summarizes these types of effects on biotic, geomorphic, and paleontological features in modern-day landscapes, and also describes several fossil sites that indicate extinct proboscideans had very similar effects, such as major sediment disturbances.

Ultrasonographic features of normalization of the pylorus after pyloromyotomy for hypertrophic pyloric stenosis.

PubMed

Yoshizawa, J; Eto, T; Higashimoto, Y; Saitou, T; Maie, M

2001-04-01

The purpose of this study was to describe the time course, early postoperative changes, and morphologic features of normalization of the pylorus after pyloromyotomy for hypertrophic pyloric stenosis. The subjects were 17 infants (9 boys, 8 girls) who underwent umbilical incision Ramstedt pyloromyotomy. The pyloric muscle mass was measured immediately before the operation and then at intervals from 3 days to 6 months after the operation using a 7.5-MHz ultrasound probe. In longitudinal section, the dorsal part of the pyloric muscle thickened transiently and then thinned to normal values by 5 months after the operation. It was 5.1 +/- 0.8 mm (mean +/- SD) preoperatively, increased to 6.0 +/- 0.3 mm by day 3 after the operation (P <.05), and thinned to 2.8 +/- 0.2 mm by 5 months after the operation. Concomitantly, the length of the pylorus gradually decreased (from 20.1 +/- 2.9 mm preoperatively to 16.9 +/- 2.7 mm by 3 days postoperatively [P <.05] and to less than 15 mm, by 4 months). In transverse section, the muscle normalized as in the longitudinal section. At the site of the incision it was 4.3 +/- 0.4 mm thick preoperatively, thickened to 4.6 +/- 0.4 mm by 3 days after the operation (P <.05), thinned to 2.1 +/- 0.9 mm by 7 days (P <.05), and then increased slightly, but always was less than 3.0 mm. Morphologically, in transverse section, the incised area looked like a wedge by 3 days after the operation. After pyloromyotomy for hypertrophic pyloric stenosis, there is an early transient increase in muscle thickness within the first few postoperative days followed by a slow decrease that reaches normal thickness (<3 mm) by 5 months. This decrease in thickness is accompanied by a gradual decrease in length to 75% of the preoperative value by 5 months. The morphologic features in this normalization are first a wedge (day 3), then a flat tire (days 7 and 14), and finally an elongated ring (5 months). J Pediatr Surg 36:582-586. Copyright 2001 by W.B. Saunders Company.

Learning reflectance confocal microscopy of melanocytic skin lesions through histopathologic transversal sections.

PubMed

Braga, Juliana Casagrande Tavoloni; Macedo, Mariana Petaccia; Pinto, Clovis; Duprat, João; Begnami, Maria Dirlei; Pellacani, Giovanni; Rezze, Gisele Gargantini

2013-01-01

Histopathologic interpretation of dermoscopic and reflectance confocal microscopy (RCM) features of cutaneous melanoma was timidly carried out using perpendicular histologic sections, which does not mimic the same plane of the image achieved at both techniques (horizontal plane). The aim of this study was to describe the transverse histologic sections research technique and correlate main dermoscopic features characteristic of cutaneous melanoma (atypical network, irregular globules and pseudopods) with RCM and histopathology in perpendicular and transverse sections in order to offer a more precise interpretation of in vivo detectable features. Four melanomas and 2 nevi with different dermoscopic clues have been studied. Lesion areas that showed characteristic dermoscopic features were imaged by dermoscopy and confocal microscopy and directly correlated with histopathology in perpendicular and transverse sections. We presented the possibility to perform transverse sections as a new approach to understand RCM features. Atypical network showed different aspects in the 2 melanomas: in one case it was characterized by pleomorphic malignant melanocytes with tendency to form aggregates, whereas in the other elongated dendritic cells crowded around dermal papillae, some of them forming bridges that resembled the mitochondrial aspect at confocal and histopathology transversal sections. Pigment globules in melanomas and nevi differed for the presence of large atypical cells in the former, and pseudopods showed up as elongated nests protruded toward the periphery of the lesion. Transverse histologic research sections have a consistent dermoscopic and confocal correlate, and it may represent an help in confocal feature interpretation and an advance in improving melanoma diagnosis and knowledge of the biology of melanocytic lesions.

Effects of management practices on grassland birds: Lesser Prairie-Chicken

USGS Publications Warehouse

Jamison, Brent E.; Dechant, Jill A.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Euliss, Betty R.

2002-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 4,000 published and unpublished papers. A range map is provided to indicate the breeding distribution of Lesser Prairie-Chicken in the United States and southern Canada. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species’ nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species’ response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species’ breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management is posted at the Web site mentioned below.

Effects of management practices on grassland birds: Brewer's sparrow

USGS Publications Warehouse

Walker, Brett L.

2004-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species’ nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species’ response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species’ breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management is posted at the Web site mentioned below.

Effects of management practices on grassland birds: Greater Sage-Grouse

USGS Publications Warehouse

Rowland, Mary M.

2004-01-01

Information on the habitat requirements and effects of habitat management on Greater Sage-Grouse was summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the current range of Greater Sage-Grouse (adapted from Schroeder et al. 2004). Although birds may be observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species’ nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species’ response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species’ breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of shrub-steppe birds and their responses to habitat management is posted at the Web site mentioned below.

Effects of management practices on grassland birds: Merlin

USGS Publications Warehouse

Konrad, Paul M.

2004-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the breeding, year-round, and nonbreeding ranges in the United States and southern Canada. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species’ nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species’ response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species’ breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management is posted at the Web site mentioned below.

Effects of management practices on grassland birds: Golden eagle

USGS Publications Warehouse

DeLong, John P.

2004-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 4,000 published and unpublished papers. A range map is provided to the breeding, year-round, and nonbreeding ranges in the United States and southern Canada. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species’ nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species’ response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species’ breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management is posted at the Web site mentioned below.

Model Driven Development of Web Services and Dynamic Web Services Composition

DTIC Science & Technology

2005-01-01

27 2.4.1 Feature-Oriented Domain Analysis ( FODA ).......................................27 2.4.2 The need of automation for Feature-Oriented...Diagram Algebra FDL Feature Description Language FODA Feature-Oriented Domain Analysis FSM Finite State Machine GDM Generative Domain...Oriented Domain Analysis ( FODA ) in Section 2.4 and Aspect-Oriented Generative Do- main Modeling (AOGDM) in Section 2.5, which not only represent two

40 CFR 228.13 - Guidelines for ocean disposal site baseline or trend assessment surveys under section 102 of the...

Code of Federal Regulations, 2011 CFR

2011-07-01

... baseline or trend assessment surveys under section 102 of the Act. 228.13 Section 228.13 Protection of... SITES FOR OCEAN DUMPING § 228.13 Guidelines for ocean disposal site baseline or trend assessment surveys under section 102 of the Act. The purpose of a baseline or trend assessment survey is to determine the...

40 CFR 228.13 - Guidelines for ocean disposal site baseline or trend assessment surveys under section 102 of the...

Code of Federal Regulations, 2014 CFR

2014-07-01

... baseline or trend assessment surveys under section 102 of the Act. 228.13 Section 228.13 Protection of... SITES FOR OCEAN DUMPING § 228.13 Guidelines for ocean disposal site baseline or trend assessment surveys under section 102 of the Act. The purpose of a baseline or trend assessment survey is to determine the...

40 CFR 228.13 - Guidelines for ocean disposal site baseline or trend assessment surveys under section 102 of the...

Code of Federal Regulations, 2012 CFR

2012-07-01

... baseline or trend assessment surveys under section 102 of the Act. 228.13 Section 228.13 Protection of... SITES FOR OCEAN DUMPING § 228.13 Guidelines for ocean disposal site baseline or trend assessment surveys under section 102 of the Act. The purpose of a baseline or trend assessment survey is to determine the...

40 CFR 228.13 - Guidelines for ocean disposal site baseline or trend assessment surveys under section 102 of the...

Code of Federal Regulations, 2013 CFR

2013-07-01

... baseline or trend assessment surveys under section 102 of the Act. 228.13 Section 228.13 Protection of... SITES FOR OCEAN DUMPING § 228.13 Guidelines for ocean disposal site baseline or trend assessment surveys under section 102 of the Act. The purpose of a baseline or trend assessment survey is to determine the...

40 CFR 228.13 - Guidelines for ocean disposal site baseline or trend assessment surveys under section 102 of the...

Code of Federal Regulations, 2010 CFR

2010-07-01

... baseline or trend assessment surveys under section 102 of the Act. 228.13 Section 228.13 Protection of... SITES FOR OCEAN DUMPING § 228.13 Guidelines for ocean disposal site baseline or trend assessment surveys under section 102 of the Act. The purpose of a baseline or trend assessment survey is to determine the...

SEM-induced shrinkage and site-selective modification of single-crystal silicon nanopores

NASA Astrophysics Data System (ADS)

Chen, Qi; Wang, Yifan; Deng, Tao; Liu, Zewen

2017-07-01

Solid-state nanopores with feature sizes around 5 nm play a critical role in bio-sensing fields, especially in single molecule detection and sequencing of DNA, RNA and proteins. In this paper we present a systematic study on shrinkage and site-selective modification of single-crystal silicon nanopores with a conventional scanning electron microscope (SEM). Square nanopores with measurable sizes as small as 8 nm × 8 nm and rectangle nanopores with feature sizes (the smaller one between length and width) down to 5 nm have been obtained, using the SEM-induced shrinkage technique. The analysis of energy dispersive x-ray spectroscopy and the recovery of the pore size and morphology reveal that the grown material along with the edge of the nanopore is the result of deposition of hydrocarbon compounds, without structural damage during the shrinking process. A simplified model for pore shrinkage has been developed based on observation of the cross-sectional morphology of the shrunk nanopore. The main factors impacting on the task of controllably shrinking the nanopores, such as the accelerating voltage, spot size, scanned area of e-beam, and the initial pore size have been discussed. It is found that single-crystal silicon nanopores shrink linearly with time under localized irradiation by SEM e-beam in all cases, and the pore shrinkage rate is inversely proportional to the initial equivalent diameter of the pore under the same e-beam conditions.

Seismic Characterization of Basalt Topography at Two Candidate Sites for the INL Remote-Handled Low-Level Waste Disposal Project

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jeff Sondrup; Gail Heath; Trent Armstrong

2011-04-01

This report presents the seismic refraction results from the depth to bed rock surveys for two areas being considered for the Remote-Handled Low-Level Waste (RH-LLW) disposal facility at the Idaho National Laboratory. The first area (Site 5) surveyed is located southwest of the Advanced Test Reactor Complex and the second (Site 34) is located west of Lincoln Boulevard near the southwest corner of the Idaho Nuclear Technology and Engineering Center (INTEC). At Site 5, large area and smaller-scale detailed surveys were performed. At Site 34, a large area survey was performed. The purpose of the surveys was to define themore » topography of the interface between the surficial alluvium and underlying basalt. Seismic data were first collected and processed using seismic refraction tomographic inversion. Three-dimensional images for both sites were rendered from the data to image the depth and velocities of the subsurface layers. Based on the interpreted top of basalt data at Site 5, a more detailed survey was conducted to refine depth to basalt. This report briefly covers relevant issues in the collection, processing and inversion of the seismic refraction data and in the imaging process. Included are the parameters for inversion and result rendering and visualization such as the inclusion of physical features. Results from the processing effort presented in this report include fence diagrams of the earth model, for the large area surveys and iso-velocity surfaces and cross sections from the detailed survey.« less

Examining Teachers' Personal and Professional Use of Facebook: Recommendations for Teacher Education Programming

ERIC Educational Resources Information Center

Steinbrecher, Trisha; Hart, Juliet

2012-01-01

Members of the Net Generation are increasingly using social networking sites to interact with individuals both on and off campus. In this study, we employed a quantitative approach with an exploration of descriptive data to examine "Facebook" site features pre-service educators use and how those features are utilized in personal and…

AutoSite: an automated approach for pseudo-ligands prediction—from ligand-binding sites identification to predicting key ligand atoms

PubMed Central

Ravindranath, Pradeep Anand; Sanner, Michel F.

2016-01-01

Motivation: The identification of ligand-binding sites from a protein structure facilitates computational drug design and optimization, and protein function assignment. We introduce AutoSite: an efficient software tool for identifying ligand-binding sites and predicting pseudo ligand corresponding to each binding site identified. Binding sites are reported as clusters of 3D points called fills in which every point is labelled as hydrophobic or as hydrogen bond donor or acceptor. From these fills AutoSite derives feature points: a set of putative positions of hydrophobic-, and hydrogen-bond forming ligand atoms. Results: We show that AutoSite identifies ligand-binding sites with higher accuracy than other leading methods, and produces fills that better matches the ligand shape and properties, than the fills obtained with a software program with similar capabilities, AutoLigand. In addition, we demonstrate that for the Astex Diverse Set, the feature points identify 79% of hydrophobic ligand atoms, and 81% and 62% of the hydrogen acceptor and donor hydrogen ligand atoms interacting with the receptor, and predict 81.2% of water molecules mediating interactions between ligand and receptor. Finally, we illustrate potential uses of the predicted feature points in the context of lead optimization in drug discovery projects. Availability and Implementation: http://adfr.scripps.edu/AutoDockFR/autosite.html Contact: sanner@scripps.edu Supplementary information: Supplementary data are available at Bioinformatics online. PMID:27354702

Brownfields Green Avenue Sites: Technical Memorandum - Conceptual Design for Sustainable Redevelopment

EPA Pesticide Factsheets

This technical memorandum briefly describes the site and proposed conceptual site plan, indicates conceptual design considerations, specifies recommended green and sustainable features, and offers other recommendations

Evolution of the Middle Bengal Fan at 8°N in the Oligocene to Pliocene - Preliminary Results from IODP Expedition 354

NASA Astrophysics Data System (ADS)

Volkhard, Spiess; Tilmann, Schwenk; Fenna, Bergmann; Christian, France-Lanord; Adam, Klaus

2016-04-01

Three deep penetration and additional four shallow sites were drilled during IODP Expedition 354 in the Bay of Bengal at 8°N in February-March 2015 across a 320 km-long transect to study Neogene Bengal fan deposition. The three deeper sites located on top of the elevated crustal features of the Ninetyeast Ridge (Site U1451) and 85°Ridge (Site U1455/DSDP Site 218) as well as central between them (Site U1450) shall provide the stratigraphic framework for the Oligocene to Pliocene reconstruction of fan deposition and sedimentary fluxes driven by monsoon evolution and Himalayan erosion and weathering. Based on shipboard biostratigraphy, drilled material reach back in geologic time to the late Miocene (Site U1450), middle Miocene (Site U1455) and Oligocene (Site U1451). While core recovery was generally severely reduced due to the presence of unconsolidated sand and silt units, half-length APC coring technology provided valuable sand samples/recovery down to ~800 meters below seafloor. Increased compaction/diagenesis of units indicating the temporary absence of fan deposition due to major depocenter shifts, comprising of calcarous clay units of mostly pelagic origin, required a change to rotary coring between 600 and 800 mbsf, and thus the presence of sand is mostly uncertain for those deeper sections. However, derived from penetration rates, a high proportion of sand is anticipated back to early Miocene or Oligocene times. The calcareous clay units serve as stratigraphic marker horizons, which turned out to be suitable for seismic correlation across the drilling transect. This in turn allows to determine sedimentary budgets and overall fan growth for numerous time slices. Recovered sediments have Himalayan mineralogical and geochemical signatures suitable to analyze time series of erosion, weathering and changes in source regions as well as impacts on the global carbon cycle. Miocene shifts in terrestrial vegetation, in sediment budget and in style of sediment transport have been tracked. Moderate sedimentation rates. Preliminary seismic stratigraphy also reveals that crustal features evolved since the Miocene thus confining pathways for turbidite transport. The onset of channel-levee structures indentified since ~10 Ma in the seismic records, is correlated with an increase in sediment flux from moderate rates on the order of 30 m/m.y. to an order of magnitude high accumulation rates during phases of sand lobe deposition and levee growth. Expedition 354 has extended the record of early fan deposition by 10 Ma into the Late Oligocene.

Initial excavation and dating of Ngalue Cave: a Middle Stone Age site along the Niassa Rift, Mozambique.

PubMed

Mercader, Julio; Asmerom, Yemane; Bennett, Tim; Raja, Mussa; Skinner, Anne

2009-07-01

Direct evidence for a systematic occupation of the African tropics during the early late Pleistocene is lacking. Here, we report a record of human occupation between 105-42ka, based on results from a radiometrically-dated cave section from the Mozambican segment of the Niassa (Malawi/Nyasa) Rift called Ngalue. The sedimentary sequence from bottom to top has five units. We concentrate on the so-called "Middle Beds," which contain a Middle Stone Age industry characterized by the use of the discoidal reduction technique. A significant typological feature is the presence of formal types such as points, scrapers, awls, and microliths. Special objects consist of grinders/core-axes covered by ochre. Ngalue is one of the few directly-dated Pleistocene sites located along the biogeographical corridor for modern human dispersals that links east, central, and southern Africa, and, with further study, may shed new light on hominin cave habitats during the late Pleistocene.

Global emergency medicine journal club: social media responses to the January 2014 online emergency medicine journal club on subarachnoid hemorrhage.

PubMed

Chan, Teresa M; Rosenberg, Hans; Lin, Michelle

2014-07-01

From January 20 to 24, 2014, Annals continued a successful collaboration with an academic Web site, Academic Life in Emergency Medicine (ALiEM), to host another Global Emergency Medicine Journal Club session featuring the 2013 Journal of the American Medical Association article "Clinical Decision Rules to Rule Out Subarachnoid Hemorrhage for Acute Headache" by Perry et al. This online journal club used the power of rapid Twitter conversations, a live videocast with the authors, and more detailed discussions hosted on the ALiEM Web site's comment section. There were more than 1,431 individuals from 501 cities in 59 countries who viewed the blog post. During this 5-day event, 28 comments (average word count 153 words) and 206 tweets were made. This summary article details the community discussion, shared insights, and analytic data generated during this novel, multiplatform approach. Copyright © 2014 American College of Emergency Physicians. Published by Mosby, Inc. All rights reserved.

Social media responses to the Annals of Emergency Medicine residents' perspective article on multiple mini-interviews.

PubMed

Joshi, Nikita K; Yarris, Lalena M; Doty, Christopher I; Lin, Michelle

2014-09-01

In May 2014, Annals of Emergency Medicine continued a successful collaboration with an academic Web site, Academic Life in Emergency Medicine (ALiEM) to host an online discussion session featuring the 2014 Annals Residents' Perspective article "Does the Multiple Mini-Interview Address Stakeholder Needs? An Applicant's Perspective" by Phillips and Garmel. This dialogue included Twitter conversations, a live videocast with the authors and other experts, and detailed discussions on the ALiEM Web site's comment section. This summary article serves the dual purpose of reporting the qualitative thematic analysis from a global online discussion and the Web analytics for our novel multimodal approach. Social media technologies provide a unique opportunity to engage with a diverse audience to detect existing and new emerging themes. Such technologies allow rapid hypothesis generation for future research and enable more accelerated knowledge translation. Copyright © 2014 American College of Emergency Physicians. Published by Mosby, Inc. All rights reserved.

A rare case of acute presentation of trocar site hernia from robot-assisted laparoscopic partial nephrectomy.

PubMed

Ng, Zi Qin; Pemberton, Richard; Tan, Patrick

2018-02-15

Trocar site hernia is not a common acute complication encountered after robot-assisted surgery, especially in the urological cohort of patients. A few case reports of small bowel obstruction secondary to incarceration by trocar site hernia have been described in gynaecological surgery and prostatectomies. As the clinical presentation is non-specific, late diagnosis has significant implication on morbidity and mortality. Here, we present a rare case of a patient with recent robot-assisted laparoscopic partial nephrectomy for a renal cell carcinoma presented with features of impending bowel obstruction secondary to incarcerated small bowel in the trocar site. We also reviewed the literature focusing on clinical features of trocar site hernia and preventive measures.

Study on detecting leachate leakage of municipal solid waste landfill site.

PubMed

Liu, Jiangang; Cao, Xianxian; Ai, Yingbo; Zhou, Dongdong; Han, Qiting

2015-06-01

The article studies the detection of the leakage passage of leachate in a waste landfill dam. The leachate of waste landfill has its own features, like high conductivity, high chroma and an increasing temperature, also, the horizontal flow velocity of groundwater on the leakage site increases. This article proposes a comprehensive tracing method to identify the leakage site of an impermeable membrane by using these features. This method has been applied to determine two leakage sites of the Yahu municipal solid waste landfill site in Pingshan District, Shenzhen, China, which shows that there are two leachate leakage passages in the waste landfill dam A between NZK-2 and NZK-3, and between NZK-6 and NZK-7. © The Author(s) 2015.

A content analysis of Web sites promoting smoking culture and lifestyle.

PubMed

Ribisl, Kurt M; Lee, Rebecca E; Henriksen, Lisa; Haladjian, Harry H

2003-02-01

The present study examined smoking culture and lifestyle Web sites listed on Yahoo!, a popular Internet search catalog, to determine whether the sites were easily accessible to youth, featured age or health warnings, and mentioned specific tobacco brands. A content analysis of photographs on these sites assessed the demographics of individuals depicted and the amount of smoking and nudity in the photographs. The sample included 30 Web sites, all of which were accessible to youth and did not require age verification services to enter them. Cigarette brand names were mentioned in writing on 35% of the sites, and brand images were present on 24% of the sites. Nearly all of the photographs (95%) depicted smoking, 92% featured women, and 7% contained partial or full nudity. These results underscore the need for greater research and monitoring of smoking-related Internet content by health educators and tobacco control advocates.

Ocean Instruments Web Site for Undergraduate, Secondary and Informal Education

NASA Astrophysics Data System (ADS)

Farrington, J. W.; Nevala, A.; Dolby, L. A.

2004-12-01

An Ocean Instruments web site has been developed that makes available information about ocean sampling and measurement instruments and platforms. The site features text, pictures, diagrams and background information written or edited by experts in ocean science and engineering and contains links to glossaries and multimedia technologies including video streaming, audio packages, and searchable databases. The site was developed after advisory meetings with selected professors teaching undergraduate classes who responded to the question, what could Woods Hole Oceanographic Institution supply to enhance undergraduate education in ocean sciences, life sciences, and geosciences? Prototypes were developed and tested with students, potential users, and potential contributors. The site is hosted by WHOI. The initial five instruments featured were provided by four WHOI scientists and engineers and by one Sea Education Association faculty member. The site is now open to contributions from scientists and engineers worldwide. The site will not advertise or promote the use of individual ocean instruments.

The Effectiveness of Course Web Sites in Higher Education: An Exploratory Study.

ERIC Educational Resources Information Center

Comunale, Christie L.; Sexton, Thomas R.; Voss, Diana J. Pedagano

2002-01-01

Describes an exploratory study of the educational effectiveness of course Web sites among undergraduate accounting students and graduate students in business statistics. Measured Web site visit frequency, usefulness of each site feature, and the impacts of Web sites on perceived learning and course performance. (Author/LRW)

A New Scheme to Characterize and Identify Protein Ubiquitination Sites.

PubMed

Nguyen, Van-Nui; Huang, Kai-Yao; Huang, Chien-Hsun; Lai, K Robert; Lee, Tzong-Yi

2017-01-01

Protein ubiquitination, involving the conjugation of ubiquitin on lysine residue, serves as an important modulator of many cellular functions in eukaryotes. Recent advancements in proteomic technology have stimulated increasing interest in identifying ubiquitination sites. However, most computational tools for predicting ubiquitination sites are focused on small-scale data. With an increasing number of experimentally verified ubiquitination sites, we were motivated to design a predictive model for identifying lysine ubiquitination sites for large-scale proteome dataset. This work assessed not only single features, such as amino acid composition (AAC), amino acid pair composition (AAPC) and evolutionary information, but also the effectiveness of incorporating two or more features into a hybrid approach to model construction. The support vector machine (SVM) was applied to generate the prediction models for ubiquitination site identification. Evaluation by five-fold cross-validation showed that the SVM models learned from the combination of hybrid features delivered a better prediction performance. Additionally, a motif discovery tool, MDDLogo, was adopted to characterize the potential substrate motifs of ubiquitination sites. The SVM models integrating the MDDLogo-identified substrate motifs could yield an average accuracy of 68.70 percent. Furthermore, the independent testing result showed that the MDDLogo-clustered SVM models could provide a promising accuracy (78.50 percent) and perform better than other prediction tools. Two cases have demonstrated the effective prediction of ubiquitination sites with corresponding substrate motifs.

A bright intra-dune feature on Titan and its implications for sand formation and transport

NASA Astrophysics Data System (ADS)

MacKenzie, Shannon; Barnes, Jason W.; Rodriguez, Sebastien; Cornet, Thomas; Brossier, Jeremy; Soderblom, Jason M.; Le Mouélic, Stephane; Sotin, Christophe; Brown, Robert H.; Buratti, Bonnie J.; Clark, Roger Nelson; Nicholson, Philip D.; Baines, Kevin

2017-10-01

Organic sands cover much of Titan’s equatorial belt, gathered into longitudinal dunes about a kilometer wide and hundreds of kilometers long. At the end of the Cassini era, questions of how such a vast volume of saltable material is or was created on Titan remain unanswered. At least two possible mechanisms suggested for forming sand-sized particles involve liquids: (1) evaporite deposition and erosion and (2) flocculation of material within a lake. Transporting sand from the lakes and seas of Titan’s poles to the equatorial belt is not strongly supported by Cassini observations: the equatorial belt sits higher than the poles and no sheets or corridors of travelling sand have been identified. Thus, previous sites of equatorial surface liquids may be of interest for understanding sand formation, such as the suggested paleoseas Tui and Hotei Regio. A newly identified feature in the VIMS data sits within the Fensal dune field but is distinct from the surrounding sand. We investigate this Bright Fensal Feature (BFF) using data from Cassini VIMS and RADAR. Specifically, we find spectral similarities between the BFF and both sand and Hotei Regio. The RADAR cross sectional backscatter is similar to neighboring dark areas, perhaps sand covered interdunes. We use this evidence to constrain the BFF’s formation history and discuss how this intra-dune feature may contribute to the processes of sand transport and supply.

Standardized UXO Technology Demonstration Site Woods Scoring Record Number 636 (Blackhawk Geoservices)

DTIC Science & Technology

2005-07-01

25 SECTION 5. ON-SITE LABOR COSTS SECTION 6. COMPARISON OF RESULTS TO OPEN FIELD DEMONSTRATION 6.1 SUMMARY OF RESULTS FROM OPEN...included for the purposes of calculating labor costs (section 5) except for downtime due to Demonstration Site issues. Demonstration Site issues, while noted...in the Daily Log, are considered non-chargeable downtime for the purposes of calculating labor costs and are not discussed. Breaks and lunches are

Turbulence and dissipation in a computational model of Luzon Strait

NASA Astrophysics Data System (ADS)

Jalali, Masoud; Sarkar, Sutanu

2014-11-01

Generation sites for topographic internal gravity waves can also be sites of intense turbulence. Bottom-intensified flow at critical slopes leads to convective instability and turbulent overturns [Gayen & Sarkar (2011)]. A steep ridge with small excursion number, Ex , but large super criticality can lead to nonlinear features according to observations [Klymak et al. (2008)] and numerical simulations [Legg & Klymak (2008)]. The present work uses high resolution 3-D LES to simulate flow over a model with multiscale topography patterned after a cross-section of Luzon Strait, a double-ridge generation site which was the subject of the recent IWISE experiment. A 1:100 scaling of topography was employed and environmental parameters were chosen to match the slope criticality and Fr number in the field. Several turbulent zones were identified including breaking lee waves, critical slope boundary layer, downslope jets, internal wave beams, and vortical valley flows. The multiscale model topography has subridges where a local Ex may be defined. Wave breaking and turbulence at these subridges can be understood if the local value of Ex is employed when using the Ex -based regimes identified by Jalali et al. (2014) in their DNS of oscillating flow over a single triangular obstacle.

Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility.

PubMed

Vrljicak, Pavle; Tao, Shijie; Varshney, Gaurav K; Quach, Helen Ngoc Bao; Joshi, Adita; LaFave, Matthew C; Burgess, Shawn M; Sampath, Karuna

2016-04-07

DNA transposons and retroviruses are important transgenic tools for genome engineering. An important consideration affecting the choice of transgenic vector is their insertion site preferences. Previous large-scale analyses of Ds transposon integration sites in plants were done on the basis of reporter gene expression or germ-line transmission, making it difficult to discern vertebrate integration preferences. Here, we compare over 1300 Ds transposon integration sites in zebrafish with Tol2 transposon and retroviral integration sites. Genome-wide analysis shows that Ds integration sites in the presence or absence of marker selection are remarkably similar and distributed throughout the genome. No strict motif was found, but a preference for structural features in the target DNA associated with DNA flexibility (Twist, Tilt, Rise, Roll, Shift, and Slide) was observed. Remarkably, this feature is also found in transposon and retroviral integrations in maize and mouse cells. Our findings show that structural features influence the integration of heterologous DNA in genomes, and have implications for targeted genome engineering. Copyright © 2016 Vrljicak et al.

A cross-sectional study of pain sensitivity, disease-activity assessment, mental health, and fibromyalgia status in rheumatoid arthritis.

PubMed

Joharatnam, Nalinie; McWilliams, Daniel F; Wilson, Deborah; Wheeler, Maggie; Pande, Ira; Walsh, David A

2015-01-20

Pain remains the most important problem for people with rheumatoid arthritis (RA). Active inflammatory disease contributes to pain, but pain due to non-inflammatory mechanisms can confound the assessment of disease activity. We hypothesize that augmented pain processing, fibromyalgic features, poorer mental health, and patient-reported 28-joint disease activity score (DAS28) components are associated in RA. In total, 50 people with stable, long-standing RA recruited from a rheumatology outpatient clinic were assessed for pain-pressure thresholds (PPTs) at three separate sites (knee, tibia, and sternum), DAS28, fibromyalgia, and mental health status. Multivariable analysis was performed to assess the association between PPT and DAS28 components, DAS28-P (the proportion of DAS28 derived from the patient-reported components of visual analogue score and tender joint count), or fibromyalgia status. More-sensitive PPTs at sites over or distant from joints were each associated with greater reported pain, higher patient-reported DAS28 components, and poorer mental health. A high proportion of participants (48%) satisfied classification criteria for fibromyalgia, and fibromyalgia classification or characteristics were each associated with more sensitive PPTs, higher patient-reported DAS28 components, and poorer mental health. Widespread sensitivity to pressure-induced pain, a high prevalence of fibromyalgic features, higher patient-reported DAS28 components, and poorer mental health are all linked in established RA. The increased sensitivity at nonjoint sites (sternum and anterior tibia), as well as over joints, indicates that central mechanisms may contribute to pain sensitivity in RA. The contribution of patient-reported components to high DAS28 should inform decisions on disease-modifying or pain-management approaches in the treatment of RA when inflammation may be well controlled.

Effects of management practices on grassland birds: Prairie Falcon

USGS Publications Warehouse

DeLong, John P.; Steenhof, Karen

2004-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 4,000 published and unpublished papers. A range map is provided to indicate the breeding, year-round, and nonbreeding ranges in the United States and southern Canada. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species’ response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region.

Elusive or Illuminating: Using the Web To Explore the Salem Witchcraft Trials.

ERIC Educational Resources Information Center

Hurter, Stephanie R.

2003-01-01

Presents Web sites useful for teaching about the Salem (Massachusetts) witchcraft trials. Includes Web sites that offer primary source material, collections of Web sites, teaching material, and sites that are interactive, including features, such as QuickTime movies. (CMK)

Breeding site selection by coho salmon (Oncorhynchus kisutch) in relation to large wood additions and factors that influence reproductive success

USGS Publications Warehouse

Clark, Steven M.; Dunham, Jason B.; McEnroe, Jeffery R.; Lightcap, Scott W.

2014-01-01

The fitness of female Pacific salmon (Oncorhynchus spp.) with respect to breeding behavior can be partitioned into at least four fitness components: survival to reproduction, competition for breeding sites, success of egg incubation, and suitability of the local environment near breeding sites for early rearing of juveniles. We evaluated the relative influences of habitat features linked to these fitness components with respect to selection of breeding sites by coho salmon (Oncorhynchus kisutch). We also evaluated associations between breeding site selection and additions of large wood, as the latter were introduced into the study system as a means of restoring habitat conditions to benefit coho salmon. We used a model selection approach to organize specific habitat features into groupings reflecting fitness components and influences of large wood. Results of this work suggest that female coho salmon likely select breeding sites based on a wide range of habitat features linked to all four hypothesized fitness components. More specifically, model parameter estimates indicated that breeding site selection was most strongly influenced by proximity to pool-tail crests and deeper water (mean and maximum depths). Linkages between large wood and breeding site selection were less clear. Overall, our findings suggest that breeding site selection by coho salmon is influenced by a suite of fitness components in addition to the egg incubation environment, which has been the emphasis of much work in the past.

Aeolian features and processes at the Mars Pathfinder landing site

USGS Publications Warehouse

Greeley, Ronald; Kraft, Michael; Sullivan, Robert; Wilson, Gregory; Bridges, Nathan; Herkenhoff, Ken; Kuzmin, Ruslan O.; Malin, Michael; Ward, Wes

1999-01-01

The Mars Pathfinder landing site contains abundant features attributed to aeolian, or wind, processes. These include wind tails, drift deposits, duneforms of various types, ripplelike features, and ventifacts (the first clearly seen on Mars). Many of these features are consistant with formation involving sand-size particles. Although some features, such as dunes, could develop from saltating sand-size aggregates of finer grains, the discovery of ventifact flutes cut in rocks strongly suggests that at least some of the grains are crystalline, rather than aggregates. Excluding the ventifacts, the orientations of the wind-related features correlate well with the orientations of bright wind steaks seen on Viking Orbiter images in the general area. They also correlate with wind direction predictions from the NASA-Ames General Circulation Model (GCM) which show that the strongest winds in the area occur in the northern hemisphere winter and are directed toward 209°. Copyright 1999 by the American Geophysical Union.

HIV-1 protease cleavage site prediction based on two-stage feature selection method.

PubMed

Niu, Bing; Yuan, Xiao-Cheng; Roeper, Preston; Su, Qiang; Peng, Chun-Rong; Yin, Jing-Yuan; Ding, Juan; Li, HaiPeng; Lu, Wen-Cong

2013-03-01

Knowledge of the mechanism of HIV protease cleavage specificity is critical to the design of specific and effective HIV inhibitors. Searching for an accurate, robust, and rapid method to correctly predict the cleavage sites in proteins is crucial when searching for possible HIV inhibitors. In this article, HIV-1 protease specificity was studied using the correlation-based feature subset (CfsSubset) selection method combined with Genetic Algorithms method. Thirty important biochemical features were found based on a jackknife test from the original data set containing 4,248 features. By using the AdaBoost method with the thirty selected features the prediction model yields an accuracy of 96.7% for the jackknife test and 92.1% for an independent set test, with increased accuracy over the original dataset by 6.7% and 77.4%, respectively. Our feature selection scheme could be a useful technique for finding effective competitive inhibitors of HIV protease.

Reservoir High's TE Site Wins Web Site of the Month

ERIC Educational Resources Information Center

Tech Directions, 2008

2008-01-01

This article features "Mr. Rhine's Technology Education Web Site," a winner of the Web Site of the Month. This Web site was designed by Luke Rhine, a teacher at the Reservoir High School in Fulton, Maryland. Rhine's Web site offers course descriptions and syllabuses, class calendars, lectures and presentations, design briefs and other course…

Effects of management practices on wetland birds: Yellow Rail

USGS Publications Warehouse

Goldade, Christopher M.; Dechant, Jill A.; Johnson, Douglas H.; Zimmerman, Amy L.; Jamison, Brent E.; Church, James O.; Euliss, Betty R.

2002-01-01

Information on the habitat requirements and effects of habitat management on wetland birds were summarized from information in more than 500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although the BBS may not capture the presence of elusive waterbird species, the BBS is a standardized survey and the range maps, in many cases, represent the most consistent information available on species’ distributions. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The section on brood parasitism summarizes information on intra- and interspecific parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species’ nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species’ response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes recommendations for habitat management provided in the literature. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of wetland birds and their responses to habitat management is posted at the Web site mentioned below.

Effects of management practices on wetland birds: Virginia rail

USGS Publications Warehouse

Zimmerman, Amy L.; Dechant, Jill A.; Jamison, Brent E.; Johnson, Douglas H.; Goldade, Christopher M.; Church, James O.; Euliss, Betty R.

2002-01-01

Information on the habitat requirements and effects of habitat management on wetland birds were summarized from information in more than 500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although the BBS may not capture the presence of elusive waterbird species, the BBS is a standardized survey and the range maps, in many cases, represent the most consistent information available on species’ distributions. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The section on brood parasitism summarizes information on intra- and interspecific parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species’ nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species’ response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes recommendations for habitat management provided in the literature. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of wetland birds and their responses to habitat management is posted at the Web site mentioned below.

Effects of management practices on wetland birds: Black tern

USGS Publications Warehouse

Zimmerman, Amy L.; Dechant, Jill A.; Johnson, Douglas A.; Goldade, Christopher M.; Jamison, Brent E.; Euliss, Betty R.

2002-01-01

Information on the habitat requirements and effects of habitat management on wetland birds were summarized from information in more than 500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although the BBS may not capture the presence of elusive waterbird species, the BBS is a standardized survey and the range maps, in many cases, represent the most consistent information available on species’ distributions. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The section on brood parasitism summarizes information on intra- and interspecific parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species’ nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species’ response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes recommendations for habitat management provided in the literature. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management is posted at the Web site mentioned below.

Effects of management practices on wetland birds: American Avocet

USGS Publications Warehouse

Dechant, Jill A.; Zimmerman, Amy L.; Johnson, Douglas H.; Goldade, Christopher M.; Jamison, Brent E.; Euliss, Betty R.

2002-01-01

Information on the habitat requirements and effects of habitat management on wetland birds were summarized from information in more than 500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although the BBS may not capture the presence of elusive waterbird species, the BBS is a standardized survey and the range maps, in many cases, represent the most consistent information available on species’ distributions. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The section on brood parasitism summarizes information on intra- and interspecific parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species’ nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species’ response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes recommendations for habitat management provided in the literature. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of wetland birds and their responses to habitat management is posted at the Web site mentioned below.

Infrared spectra and crystal chemistry of scapolites: implications for Martian mineralogy

USGS Publications Warehouse

Swayze, G.A.; Clark, R.N.

1990-01-01

Near-infrared and midinfrared spectra of a wide range of scapolite compositions were studied to determine the cause of the 2.36-??m features that have been correlated with similar features in the near-IR spectrum of Mars. We attribute the 2.36-??m features to vibrations caused by HCO-3 and HSO-4 in the anion sites of scapolite. The 2.36-??m absorption complex consists of four overlapping bands. The relative intensities of all four bands vary according to the HCO-3/HSO-4 ratio and disordered anion site occupancy. The positional disorder of HCO-3 and HSO4 in the low-symmetry anion site of scapolite gives the 2.36-??m band complex a unique spectral signature not likely to be duplicated in any other mineral. -from Authors

Assessing mental stress from the photoplethysmogram: a numerical study

PubMed Central

Charlton, Peter H; Celka, Patrick; Farukh, Bushra; Chowienczyk, Phil; Alastruey, Jordi

2018-01-01

Abstract Objective: Mental stress is detrimental to cardiovascular health, being a risk factor for coronary heart disease and a trigger for cardiac events. However, it is not currently routinely assessed. The aim of this study was to identify features of the photoplethysmogram (PPG) pulse wave which are indicative of mental stress. Approach: A numerical model of pulse wave propagation was used to simulate blood pressure signals, from which simulated PPG pulse waves were estimated using a transfer function. Pulse waves were simulated at six levels of stress by changing the model input parameters both simultaneously and individually, in accordance with haemodynamic changes associated with stress. Thirty-two feature measurements were extracted from pulse waves at three measurement sites: the brachial, radial and temporal arteries. Features which changed significantly with stress were identified using the Mann–Kendall monotonic trend test. Main results: Seventeen features exhibited significant trends with stress in measurements from at least one site. Three features showed significant trends at all three sites: the time from pulse onset to peak, the time from the dicrotic notch to pulse end, and the pulse rate. More features showed significant trends at the radial artery (15) than the brachial (8) or temporal (7) arteries. Most features were influenced by multiple input parameters. Significance: The features identified in this study could be used to monitor stress in healthcare and consumer devices. Measurements at the radial artery may provide superior performance than the brachial or temporal arteries. In vivo studies are required to confirm these observations. PMID:29658894

Terrestrial Analogs to Wind-Related Features at the Viking and Pathfinder Landing Sites on Mars

NASA Technical Reports Server (NTRS)

Greeley, Ronald; Bridges, Nathan T.; Kuzmin, Ruslan O.; Laity, Julie E.

2002-01-01

Features in the Mojave Desert and Iceland provide insight into the characteristics and origin of Martian wind-related landforms seen by the Viking and Pathfinder landers. The terrestrial sites were chosen because they exhibit diverse wind features that are generally well understood. These features have morphologies comparable to those on Mars and include origins by deposition and erosion, with erosional processes modifying both soils and rocks. Duneforms and drifts are the most common depositional features seen at the Martian landing sites and indicate supplies of sand-sized particles blown by generally unidirectional winds. Erosional features include lag deposits, moat-like depressions around some rocks, and exhumed soil horizons. They indicate that wind can deflate at least some sediments and that this process is particularly effective where the wind interacts with rocks. The formation of ripples and wind tails involves a combination of depositional and erosional processes. Rock erosional features, or ventifacts, are recognized by their overall shapes, erosional flutes, and characteristic surface textures resulting from abrasion by windblown particles. The physics of saltation requires that particles in ripples and duneforms are predominantly sand-sized (60-2000 microns). The orientations of duneforms, wind tails, moats, and ventifacts are correlated with surface winds above particle threshold. Such winds are influenced by local topography and are correlated with winds at higher altitudes predicted by atmospheric models.

Evaluating the relationship between lateral slip and repeated fold deformation along a transtensive step-over on the San Andreas fault at the Frazier Mountain site

NASA Astrophysics Data System (ADS)

Weldon, R. J.; Streig, A. R.; Frazier Mountain SoSAFE Trenching Team

2011-12-01

Transtensive step-overs known as sags are among the most ubiquitous features of strike slip faults. These structures create closed depressions that collect sediment, are often wet and thus preserve organic material that can be used to date the thick and rapidly accumulating section. It is clear from historical ruptures that these depressions grow incrementally with each earthquake. We are developing methods to carefully document and separate individual folding events, and to relate the amount of sagging or folding to the amount of horizontal slip creating the sag, with the goal of generating slip per event chronologies. This will be useful as sags are often the best sites for preserving evidence of earthquake timing, and determining slip at these sites will eliminate the ambiguity inherent in tying earthquake age data from micro-stratigraphic sites to nearby undated sites with good micro-geomorphic slip evidence. We apply this approach to the Frazier Mountain site on the Southern San Andreas fault where we integrate trenching, cone penetrometer testing (CPT), surveying, photomosaicing, B4 LiDAR data and GIS techniques to make a detailed 3D map of subsurface geology, fault traces and related folds across the site. These data are used to generate structure contour and isopach maps for key stratigraphic units in order to evaluate fold deformation of paleo-ground surfaces across a transtensional step-over on the San Andreas fault. Approximately 20 trenches show the main active trace of the San Andreas fault right stepping ~30 m over ~100 m along strike producing two small synclinal sags that dramatically thicken the stratigraphic section. The northwest sag is about 50 m long, 5 m wide, and the southwest sag measures 20 m long and about 8 m wide. The Frazier Mountain site has yielded good earthquake chronologies, and relationships between fold deformation and surface fault rupture for the last 6 earthquakes. We observe that the degree of sagging in the synclines varies along strike for each feature, but that the ratio of fold deformation between earthquake horizons remains constant in both synclines. The penultimate earthquake, E2, produced a depression that was infilled by gravel which was subsequently folded in the most recent earthquake in 1857. Fine-grained alluvial units overlie the gravel and fill the 1857 depression such that the current surface is relatively horizontal. E2 has double the observed folding associated with the 1857 event in the core of the NW syncline. Earthquake E6 has double the amount of fold deformation observed across the E3 paleo-surface in both sags, and three times the deformation observed on the E2 surface in the NW sag. Ratios of fold deformation between events are E2 = 2*E1, E6 = 3*E2, and E6 = 2*E3. We plan to model the folding to quantitatively assess the lateral offset, but to date we have only been able to establish minimum offset values (Scharer, Gibson, Weldon, Streig, this meeting). Qualitatively, the realitive amounts of folding suggest all slip events are similar to 1857, which had ~5 meters slip at this site.

e-Ana and e-Mia: A Content Analysis of Pro–Eating Disorder Web Sites

PubMed Central

Schenk, Summer; Wilson, Jenny L.; Peebles, Rebecka

2010-01-01

Objectives. The Internet offers Web sites that describe, endorse, and support eating disorders. We examined the features of pro–eating disorder Web sites and the messages to which users may be exposed. Methods. We conducted a systematic content analysis of 180 active Web sites, noting site logistics, site accessories, “thinspiration” material (images and prose intended to inspire weight loss), tips and tricks, recovery, themes, and perceived harm. Results. Practically all (91%) of the Web sites were open to the public, and most (79%) had interactive features. A large majority (84%) offered pro-anorexia content, and 64% provided pro-bulimia content. Few sites focused on eating disorders as a lifestyle choice. Thinspiration material appeared on 85% of the sites, and 83% provided overt suggestions on how to engage in eating-disordered behaviors. Thirty-eight percent of the sites included recovery-oriented information or links. Common themes were success, control, perfection, and solidarity. Conclusions. Pro–eating disorder Web sites present graphic material to encourage, support, and motivate site users to continue their efforts with anorexia and bulimia. Continued monitoring will offer a valuable foundation to build a better understanding of the effects of these sites on their users. PMID:20558807

Characterizing spatial structure of sediment E. coli populations to inform sampling design.

PubMed

Piorkowski, Gregory S; Jamieson, Rob C; Hansen, Lisbeth Truelstrup; Bezanson, Greg S; Yost, Chris K

2014-01-01

Escherichia coli can persist in streambed sediments and influence water quality monitoring programs through their resuspension into overlying waters. This study examined the spatial patterns in E. coli concentration and population structure within streambed morphological features during baseflow and following stormflow to inform sampling strategies for representative characterization of E. coli populations within a stream reach. E. coli concentrations in bed sediments were significantly different (p = 0.002) among monitoring sites during baseflow, and significant interactive effects (p = 0.002) occurred among monitoring sites and morphological features following stormflow. Least absolute shrinkage and selection operator (LASSO) regression revealed that water velocity and effective particle size (D 10) explained E. coli concentration during baseflow, whereas sediment organic carbon, water velocity and median particle diameter (D 50) were important explanatory variables following stormflow. Principle Coordinate Analysis illustrated the site-scale differences in sediment E. coli populations between disconnected stream segments. Also, E. coli populations were similar among depositional features within a reach, but differed in relation to high velocity features (e.g., riffles). Canonical correspondence analysis resolved that E. coli population structure was primarily explained by spatial (26.9–31.7 %) over environmental variables (9.2–13.1 %). Spatial autocorrelation existed among monitoring sites and morphological features for both sampling events, and gradients in mean particle diameter and water velocity influenced E. coli population structure for the baseflow and stormflow sampling events, respectively. Representative characterization of streambed E. coli requires sampling of depositional and high velocity environments to accommodate strain selectivity among these features owing to sediment and water velocity heterogeneity.

Perceptions of Business Students' Feature Requirements in Educational Web Sites

ERIC Educational Resources Information Center

Hazari, Sunil; Johnson, Barbara

2007-01-01

There is paucity of original research that explains phenomena related to content organization and site design of educational Web sites. Educational Web sites are often used to provide Web-based instruction, which itself is a relatively recent phenomenon for business schools, and additional research is needed in this area. Educational Web sites are…

Installation Restoration Program. Remedial Investigation Report. Volume 2. Sections 4-6. Alpena Combat Readiness Training Center, Alpena County Regional Airport, Michigan Air National Guard, Alpena, Michigan.

DTIC Science & Technology

1995-06-01

Remedial Investigation Report of Sites l-9 at Alpens CRTC Alpena Ml. Volume II Sections 4-6. A remedial investigation was performed on 9 sites at the... Alpena CRTC to determine the extent of contamination at the sites. The sites involved ill this investigation include: Site 1 POL Storage Area; Site 2

40 CFR 761.250 - Sample site selection for pipeline section abandonment.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 40 Protection of Environment 30 2010-07-01 2010-07-01 false Sample site selection for pipeline... Disposal of Natural Gas Pipeline: Selecting Sample Sites, Collecting Surface Samples, and Analyzing Standard PCB Wipe Samples § 761.250 Sample site selection for pipeline section abandonment. This procedure...

40 CFR 761.250 - Sample site selection for pipeline section abandonment.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 40 Protection of Environment 31 2011-07-01 2011-07-01 false Sample site selection for pipeline... Disposal of Natural Gas Pipeline: Selecting Sample Sites, Collecting Surface Samples, and Analyzing Standard PCB Wipe Samples § 761.250 Sample site selection for pipeline section abandonment. This procedure...

10 CFR 503.22 - Site limitations.

Code of Federal Regulations, 2010 CFR

2010-01-01

... support the granting of this exemption); and (3) The anticipated duration of the site limitation which... 10 Energy 4 2010-01-01 2010-01-01 false Site limitations. 503.22 Section 503.22 Energy DEPARTMENT... Site limitations. (a) Eligibility. Section 211(a)(2) of the Act provides for a temporary exemption due...

Readmissions for surgical site infections following caesarean section.

PubMed

El-Achi, Vanessa; Wan, King Man; Brown, James; Marshall, Drew; McGee, Therese

2018-03-05

This retrospective study was conducted to identify the incidence and characteristics associated with readmissions for surgical site infections following caesarean section in a tertiary hospital from 2012 to 2015. Of 6334 patients who underwent caesarean section, 165 (2.6%) were readmitted, most commonly for surgical site infection (25.5%, n = 42). Thirty-seven of these patients (88%) had an emergency caesarean compared to five (12%) following an elective caesarean section. Of the women with surgical site infections, 69% were overweight and 14% had diabetes. Emergency caesarean sections were responsible for the majority of readmissions, particularly in women with co-morbidities that predisposed them to infection. © 2018 The Royal Australian and New Zealand College of Obstetricians and Gynaecologists.

Cascade detection for the extraction of localized sequence features; specificity results for HIV-1 protease and structure-function results for the Schellman loop.

PubMed

Newell, Nicholas E

2011-12-15

The extraction of the set of features most relevant to function from classified biological sequence sets is still a challenging problem. A central issue is the determination of expected counts for higher order features so that artifact features may be screened. Cascade detection (CD), a new algorithm for the extraction of localized features from sequence sets, is introduced. CD is a natural extension of the proportional modeling techniques used in contingency table analysis into the domain of feature detection. The algorithm is successfully tested on synthetic data and then applied to feature detection problems from two different domains to demonstrate its broad utility. An analysis of HIV-1 protease specificity reveals patterns of strong first-order features that group hydrophobic residues by side chain geometry and exhibit substantial symmetry about the cleavage site. Higher order results suggest that favorable cooperativity is weak by comparison and broadly distributed, but indicate possible synergies between negative charge and hydrophobicity in the substrate. Structure-function results for the Schellman loop, a helix-capping motif in proteins, contain strong first-order features and also show statistically significant cooperativities that provide new insights into the design of the motif. These include a new 'hydrophobic staple' and multiple amphipathic and electrostatic pair features. CD should prove useful not only for sequence analysis, but also for the detection of multifactor synergies in cross-classified data from clinical studies or other sources. Windows XP/7 application and data files available at: https://sites.google.com/site/cascadedetect/home. nacnewell@comcast.net Supplementary information is available at Bioinformatics online.

Activities of the Boom and Chassis Group

NASA Technical Reports Server (NTRS)

Dell, Jason Scott; Meeks, Thomas Bayne; Merkel, Kelly; Nelson, Brent; Winchell, Tom

1992-01-01

Group One of the NASA Lunar Enabler Project has designed the primary chassis and boom structures for the lunar vehicle. Both components also feature V-clamps that were adapted to interface connections within the structure. The chassis features a front end, rear end section, middle cross-section, and face plate. The rear section contains an extra compartment for the engine, hydraulic pump, fuel bottles, and oil reservoir necessary for the wheel drives. Each section consists of tubular aluminum 6061-T6. The boom features four degrees of freedom system, where the minimum factor of safety of any part is 1.5 (but, normally much higher). It consists of a tapered upper boom, lower boom, and three elbows that complement the articulation joints. Each section of the boom has been constructed from aluminum 6061-T6. There are four joints and eight V-clamps in the boom assembly. The V-clamps feature support rings that prevent axial rotation. They provide easy adaptability and assembly.

Predicting lysine glycation sites using bi-profile bayes feature extraction.

PubMed

Ju, Zhe; Sun, Juhe; Li, Yanjie; Wang, Li

2017-12-01

Glycation is a nonenzymatic post-translational modification which has been found to be involved in various biological processes and closely associated with many metabolic diseases. The accurate identification of glycation sites is important to understand the underlying molecular mechanisms of glycation. As the traditional experimental methods are often labor-intensive and time-consuming, it is desired to develop computational methods to predict glycation sites. In this study, a novel predictor named BPB_GlySite is proposed to predict lysine glycation sites by using bi-profile bayes feature extraction and support vector machine algorithm. As illustrated by 10-fold cross-validation, BPB_GlySite achieves a satisfactory performance with a Sensitivity of 63.68%, a Specificity of 72.60%, an Accuracy of 69.63% and a Matthew's correlation coefficient of 0.3499. Experimental results also indicate that BPB_GlySite significantly outperforms three existing glycation sites predictors: NetGlycate, PreGly and Gly-PseAAC. Therefore, BPB_GlySite can be a useful bioinformatics tool for the prediction of glycation sites. A user-friendly web-server for BPB_GlySite is established at 123.206.31.171/BPB_GlySite/. Copyright © 2017 Elsevier Ltd. All rights reserved.

Surgical site infection in cesarean sections with the use of a plastic sheath wound retractor compared to the traditional self-retaining metal retractor.

PubMed

Hinkson, Larry; Siedentopf, Jan-Peter; Weichert, Alexander; Henrich, Wolfgang

2016-08-01

A cesarean section rate of up to 19.4% is reported worldwide. Surgical site infection occurs with rates of up to 13.5%. Plastic-sheath wound retractors show reduced rates of surgical site infections in abdominal surgery. There is limited evidence in women having cesarean sections. This study evaluates the use of the Alexis(®) O C-Section Retractor in the prevention of surgical site infection in patients undergoing their first planned cesarean section compared to the traditional Collins self-retaining metal retractor. A single center, prospective, randomized, controlled, observational trial. The primary outcome is surgical site infection as defined by the Centers for Disease Control and Prevention. The secondary outcomes included intraoperative surgical parameters, postoperative pain scores and the short and long-term satisfaction with wound healing. From October 2013 to December 2015 at the Charité University Hospital, Berlin. 98 patients to the Alexis(®) O C-Section Retractor group and 100 to the traditional Collins self-retaining metal retractor group. A statistically significant reduction in the rate of surgical site infections, when the Alexis(®) O C-Section Retractor was used for wound retraction compared to the traditional Collins metal self-retaining wound retractor, 1% vs. 8% (RR 7.84, 95% CI (2.45-70.71) p=0.035). The use of plastic-sheath wound retractors compared to the traditional self-retaining metal retractor in low risk women, having the first cesarean section is associated with a significantly reduced risk of surgical site infection. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Mounting ground sections of teeth: Cyanoacrylate adhesive versus Canada balsam.

PubMed

Vangala, Manogna Rl; Rudraraju, Amrutha; Subramanyam, R V

2016-01-01

Hard tissues can be studied by either decalcification or by preparing ground sections. Various mounting media have been tried and used for ground sections of teeth. However, there are very few studies on the use of cyanoacrylate adhesive as a mounting medium. The aim of our study was to evaluate the efficacy of cyanoacrylate adhesive (Fevikwik™) as a mounting medium for ground sections of teeth and to compare these ground sections with those mounted with Canada balsam. Ground sections were prepared from twenty extracted teeth. Each section was divided into two halves and mounted on one slide, one with cyanoacrylate adhesive (Fevikwik™) and the other with Canada balsam. Scoring for various features in the ground sections was done by two independent observers. Statistical analysis using Student's t-test (unpaired) of average scores was performed for each feature observed. No statistically significant difference was found between the two for most of the features. However, cyanoacrylate was found to be better than Canada balsam for observing striae of Retzius (P < 0.0205), enamel lamellae (P < 0.036), dentinal tubules (P < 0.0057), interglobular dentin (P < 0.0001), sclerotic dentin - transmitted light (P < 0.00001), sclerotic dentin - polarized light (P < 0.0002) and Sharpey's fibers (P < 0.0004). This initial study shows that cyanoacrylate is better than Canada balsam for observing certain features of ground sections of teeth. However, it remains to be seen whether it will be useful for studying undecalcified sections of carious teeth and for soft tissue sections.

The Haw River Sites: Archaeological Investigations at Two Stratified Sites in the North Carolina Piedmont. Volume III.

DTIC Science & Technology

1982-04-01

Excavation Unit 5 - Square 8 - Level 4 - Feature 12 - n - 12 (ID numbers 368-379 in Appendix 3, Table 3) Vessel II Block C - Excavation Unit 6 - Square 8...Level 4 - Feature 7 - See Figure 7.13 - n 38 (ID numbers 380-417 In Appendix 3, Table 3) OO Vessel Ill Block C - Excavation Unit 7 - Square 1 - levels...4-8 - Feature 5 - See Figure 7.12 - n - 90 (ID numbers 418-507 In Appendix 3, Table 3) Vessel IV Block C - Excavation Unit 7 - Square 1 - Levels 4-8

Evaluation of Quality, Content, and Use of the Web Site Prepared for Family Members Giving Care to Stroke Patients.

PubMed

Demir, Yasemin; Gozum, Sebahat

2015-09-01

This study was designed to evaluate the quality, content, usability, and efficacy of a Web site prepared for the purpose of improving the caregiving capability of family members who provide care for stroke survivors at home. The DISCERN score for the Web site was found to be 4.35 over 5. The first section that assesses reliability of the Web site was 4.38 over 5; mean score of the second section that measures the quality of the provided information on treatment/care options was 4.30, and mean score of the third section that gives a general evaluation of the material was 4.1. The Web site content achieved an average score of 3.47 over 4 after evaluation by experts. The Web site system usability score was found to be 79.4 over 100. The Web site was utilized mostly for exercises in bed (76.3%; n = 29), use of medications, and patient safety (68.4%; n = 26). It was determined that those who were younger and employed and had no previous experience of nursing any patient utilized relatively more from the section of patient nutrition and oral care and married family caregivers from the body hygiene section. The Web site quality and content were judged to be good and reliable to use. The Web site was efficiently used by caregivers.

7 CFR 1822.278 - Special requirements for RHS section 523 loans (loans to organizations providing sites for self...

Code of Federal Regulations, 2011 CFR

2011-01-01

... to organizations providing sites for self-help housing). 1822.278 Section 1822.278 Agriculture... organizations providing sites for self-help housing). Loans to organizations which will provide sites for self... exceptions: (a) Eligibility. The applicant must be a nonprofit organization engaged in assisting self-help...

7 CFR 1822.278 - Special requirements for RHS section 523 loans (loans to organizations providing sites for self...

Code of Federal Regulations, 2013 CFR

2013-01-01

... to organizations providing sites for self-help housing). 1822.278 Section 1822.278 Agriculture... organizations providing sites for self-help housing). Loans to organizations which will provide sites for self... exceptions: (a) Eligibility. The applicant must be a nonprofit organization engaged in assisting self-help...

7 CFR 1822.278 - Special requirements for RHS section 523 loans (loans to organizations providing sites for self...

Code of Federal Regulations, 2012 CFR

2012-01-01

... to organizations providing sites for self-help housing). 1822.278 Section 1822.278 Agriculture... organizations providing sites for self-help housing). Loans to organizations which will provide sites for self... exceptions: (a) Eligibility. The applicant must be a nonprofit organization engaged in assisting self-help...

7 CFR 1822.278 - Special requirements for RHS section 523 loans (loans to organizations providing sites for self...

Code of Federal Regulations, 2014 CFR

2014-01-01

... to organizations providing sites for self-help housing). 1822.278 Section 1822.278 Agriculture... organizations providing sites for self-help housing). Loans to organizations which will provide sites for self... exceptions: (a) Eligibility. The applicant must be a nonprofit organization engaged in assisting self-help...

7 CFR 1822.278 - Special requirements for RHS section 523 loans (loans to organizations providing sites for self...

Code of Federal Regulations, 2010 CFR

2010-01-01

... to organizations providing sites for self-help housing). 1822.278 Section 1822.278 Agriculture... organizations providing sites for self-help housing). Loans to organizations which will provide sites for self... exceptions: (a) Eligibility. The applicant must be a nonprofit organization engaged in assisting self-help...

24 CFR 578.25 - Site control.

Code of Federal Regulations, 2014 CFR

2014-04-01

... 24 Housing and Urban Development 3 2014-04-01 2013-04-01 true Site control. 578.25 Section 578.25... COMMUNITY FACILITIES CONTINUUM OF CARE PROGRAM Application and Grant Award Process § 578.25 Site control. (a... has site control within the time frame established in section § 578.21 before HUD will execute a grant...

24 CFR 578.25 - Site control.

Code of Federal Regulations, 2013 CFR

2013-04-01

... 24 Housing and Urban Development 3 2013-04-01 2013-04-01 false Site control. 578.25 Section 578.25... COMMUNITY FACILITIES CONTINUUM OF CARE PROGRAM Application and Grant Award Process § 578.25 Site control. (a... has site control within the time frame established in section § 578.21 before HUD will execute a grant...

77 FR 43073 - Proposed CERCLA Section 122(h) Settlement Relating to the Jewett White Lead Company Superfund...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-23

... the Jewett White Lead Company Superfund Site (``Site''), Located on Staten Island, Richmond County, NY... accordance with Section 122(i) of the Comprehensive Environmental Response, Compensation, and Liability Act... in connection with the Jewett White Lead Company Superfund Site (``Site''), located on Staten Island...

Aluminium X-ray absorption Near Edge Structure in model compounds and Earth's surface minerals

NASA Astrophysics Data System (ADS)

Ildefonse, P.; Cabaret, D.; Sainctavit, P.; Calas, G.; Flank, A.-M.; Lagarde, P.

Aluminium K-edge X-ray absorption near edge spectra (XANES) of a suite of silicate and oxides minerals consist of electronic excitations occurring in the edge region, and multiple scattering resonances at higher energies. The main XANES feature for four-fold Al is at around 2 eV lower energy than the main XANES feature for six-fold Al. This provides a useful probe for coordination numbers in clay minerals, gels, glasses or material with unknown Al-coordination number. Six-fold aluminium yields a large variety of XANES features which can be correlated with octahedral point symmetry, number of aluminium sites and distribution of Al-O distances. These three parameters may act together, and the quantitative interpretation of XANES spectra is difficult. For a low point symmetry (1), variations are mainly related to the number of Al sites and distribution of Al-O distances: pyrophyllite, one Al site, is clearly distinguished from kaolinite and gibbsite presenting two Al sites. For a given number of Al-site (1), variations are controlled by changes in point symmetry, the number of XANES features being increased as point symmetry decreases. For a given point symmetry (1) and a given number of Al site (1), variations are related to second nearest neighbours (gibbsite versus kaolinite). The amplitude of the XANES feature at about 1566 eV is a useful probe for the assessment of AlIV/Altotal ratios in 2/1 phyllosilicates. Al-K XANES has been performed on synthetic Al-bearing goethites which cannot be studied by 27Al NMR. At low Al content, Al-K XANES is very different from that of α-AlOOH but at the highest level, XANES spectrum tends to that of diaspore. Al-K XAS is thus a promising tool for the structural study of poorly ordered materials such as clay minerals and natural alumino-silicate gels together with Al-subsituted Fe-oxyhydroxides.

Solvent Recycling for Shipyards

DTIC Science & Technology

1993-05-01

Suvey results are included in Section 5) Survey manufacturers and compile information on available equipment and features . (Data is summarized in Section...should be placed on safety features . Important safety features include explosion-proof electricals and grounding protection, overpressure relief valves...solvent can dissolve a polymer plastic liner, or extract water from a clay liner, resulting in liner leakage. The threat is compounded by the ability

Airbag Trail Dubbed 'Magic Carpet'

NASA Technical Reports Server (NTRS)

2004-01-01

[figure removed for brevity, see original site] Click on the image for Airbag Trail Dubbed 'Magic Carpet' (QTVR)

[figure removed for brevity, see original site] [figure removed for brevity, see original site] Magic Carpet Close-upMagic Carpet Close-up HD

This section of the first color image from the Mars Exploration Rover Spirit has been further processed to produce a sharper look at a trail left by the one of rover's airbags. The drag mark was made after the rover landed and its airbags were deflated and retracted. Scientists have dubbed the region the 'Magic Carpet' after a crumpled portion of the soil that appears to have been peeled away (lower left side of the drag mark). Rocks were also dragged by the airbags, leaving impressions and 'bow waves' in the soil. The mission team plans to drive the rover over to this site to look for additional clues about the composition of the martian soil. This image was taken by Spirit's panoramic camera.

This extreme close-up image (see insets above) highlights the martian feature that scientists have named 'Magic Carpet' because of its resemblance to a crumpled carpet fold. Scientists think the soil here may have detached from its underlying layer, possibly due to interaction with the Mars Exploration Rover Spirit's airbag after landing. This image was taken on Mars by the rover's panoramic camera.

Habitat features and predictive habitat modeling for the Colorado chipmunk in southern New Mexico

USGS Publications Warehouse

Rivieccio, M.; Thompson, B.C.; Gould, W.R.; Boykin, K.G.

2003-01-01

Two subspecies of Colorado chipmunk (state threatened and federal species of concern) occur in southern New Mexico: Tamias quadrivittatus australis in the Organ Mountains and T. q. oscuraensis in the Oscura Mountains. We developed a GIS model of potentially suitable habitat based on vegetation and elevation features, evaluated site classifications of the GIS model, and determined vegetation and terrain features associated with chipmunk occurrence. We compared GIS model classifications with actual vegetation and elevation features measured at 37 sites. At 60 sites we measured 18 habitat variables regarding slope, aspect, tree species, shrub species, and ground cover. We used logistic regression to analyze habitat variables associated with chipmunk presence/absence. All (100%) 37 sample sites (28 predicted suitable, 9 predicted unsuitable) were classified correctly by the GIS model regarding elevation and vegetation. For 28 sites predicted suitable by the GIS model, 18 sites (64%) appeared visually suitable based on habitat variables selected from logistic regression analyses, of which 10 sites (36%) were specifically predicted as suitable habitat via logistic regression. We detected chipmunks at 70% of sites deemed suitable via the logistic regression models. Shrub cover, tree density, plant proximity, presence of logs, and presence of rock outcrop were retained in the logistic model for the Oscura Mountains; litter, shrub cover, and grass cover were retained in the logistic model for the Organ Mountains. Evaluation of predictive models illustrates the need for multi-stage analyses to best judge performance. Microhabitat analyses indicate prospective needs for different management strategies between the subspecies. Sensitivities of each population of the Colorado chipmunk to natural and prescribed fire suggest that partial burnings of areas inhabited by Colorado chipmunks in southern New Mexico may be beneficial. These partial burnings may later help avoid a fire that could substantially reduce habitat of chipmunks over a mountain range.

Depositional history, nannofossil biostratigraphy, and correlation of Argo Abyssal Plain Sites 765 and 261

USGS Publications Warehouse

Dumoulin, Julie A.; Bown, Paul R.; Stewart, Sondra K.; Kennett, Diana; Mazzullo, Elsa K.

1992-01-01

Sediments from the Argo Abyssal Plain (AAP), northwest of Australia, are the oldest known from the Indian Ocean and were recovered from ODP Site 765 and DSDP Site 261. New biostratigraphic and sedimentologic data from these sites, as well as reinterpretations of earlier findings, indicate that basal sediments at both localities are of Late Jurassic age and delineate a history of starved sedimentation punctuated by periodic influx of calcareous pelagic turbidites.Biostratigraphy and correlation of Upper Jurassic-Lower Cretaceous sediments is based largely on calcareous nannofossils. Both sites yielded variably preserved nannofossil successions ranging from Tithonian to Hauterivian at Site 765 and Kimmeridgian to Hauterivian at Site 261. The nannofloras are comparable to those present in the European and Atlantic Boreal and Tethyan areas, but display important differences that reflect biogeographic differentiation. The Argo region is thought to have occupied a position at the southern limit of the Tethyan nannofloral realm, thus yielding both Tethyan and Austral biogeographic features.Sedimentary successions at the two sites are grossly similar, and differences largely reflect Site 765 's greater proximity to the continental margin. Jurassic sediments were deposited at rates of about 2 m/m.y. near the carbonate compensation depth (CCD) and contain winnowed concentrations of inoceramid prisms and nannofossils, redeposited layers rich in calcispheres and calcisphere debris, manganese nodules, and volcanic detritus. Lower Cretaceous and all younger sediments accumulated below the CCD at rates that were highest (about 20 m/m.y.) during mid-Cretaceous and Neogene time. Background sediment in this interval is noncalcareous claystone; turbidites dominate the sequence and are thicker and coarser grained at Site 765.AAP turbidites consist mostly of calcareous and siliceous biogenic components and volcanogenic smectite clay; they were derived from relatively deep parts of the continental margin that lay below the photic zone, but above the CCD. The Jurassic-Lower Cretaceous section is about the same thickness across the AAP; turbidites in this interval appear to have had multiple sources along the Australian margin. The Upper Cretaceous-Cenozoic section, however, is three times thicker at Site 765 than at Site 261; turbidites in this interval were derived predominantly from the south.Patterns of sedimentation across the AAP have been influenced by shifts in sea level, the CCD, and configuration of the continental margin. Major pulses of calcareous turbidite deposition occurred during Valanginian, Aptian, and Neogene time—all periods of eustatic lowstands and depressed CCD levels. Sediment redeposited on the AAP has come largely from the Australian outer shelf, continental slope, or rise, rather than the continent itself. Most terrigenous detritus was trapped in epicontinental basins that have flanked northwestern Australia since the early Mesozoic.

Digisonde at Sondrestrom to monitor the ionospheric polar cap and cusp region. Technical report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crowley, G.; Reinisch, B.W.; Kitrosser, D.F.

1990-01-01

In July 1989, the Air Force meridional chain of Digisondes was completed by the installation of a system in Sondrestromfjord, Greenland (66.98 deg N, 50.94 deg W). In this report we describe the Sondrestrom site and instrument, and the relationship between Sondrestrom and the other AF sites. We also established the importance of this site by describing its geophysically unique features. Finally, some of the first measurements from Sondrestrom are presented, and interpreted in terms of high latitude features. Keywords: Geomagnetism; Plasmas physics drift; Magnetosphere; Ionosphere; Polar cap; Ionosondes.

Site-specific electronic structure analysis by channeling EELS and first-principles calculations.

PubMed

Tatsumi, Kazuyoshi; Muto, Shunsuke; Yamamoto, Yu; Ikeno, Hirokazu; Yoshioka, Satoru; Tanaka, Isao

2006-01-01

Site-specific electronic structures were investigated by electron energy loss spectroscopy (EELS) under electron channeling conditions. The Al-K and Mn-L(2,3) electron energy loss near-edge structure (ELNES) of, respectively, NiAl2O4 and Mn3O4 were measured. Deconvolution of the raw spectra with the instrumental resolution function restored the blunt and hidden fine features, which allowed us to interpret the experimental spectral features by comparing with theoretical spectra obtained by first-principles calculations. The present method successfully revealed the electronic structures specific to the differently coordinated cationic sites.

Diagnostic and prognostic histopathology system using morphometric indices

DOE Office of Scientific and Technical Information (OSTI.GOV)

Parvin, Bahram; Chang, Hang; Han, Ju

Determining at least one of a prognosis or a therapy for a patient based on a stained tissue section of the patient. An image of a stained tissue section of a patient is processed by a processing device. A set of features values for a set of cell-based features is extracted from the processed image, and the processed image is associated with a particular cluster of a plurality of clusters based on the set of feature values, where the plurality of clusters is defined with respect to a feature space corresponding to the set of features.

Exploration of the West Florida Shelf Blue Holes Investigation of Physical and Biological Characteristics and Archaeological Implications of Unique Karst Features

NASA Astrophysics Data System (ADS)

Culter, J. K.

2006-12-01

The west Florida continental shelf is nearly as large as peninsular Florida and embraces a vast mosaic of marine habitats. The dominant shelf habitats have been described and studied to some degree. However, the offshore submerged sinkhole and spring features (blue holes) have not been scientifically described or studied, with the exception of one site called the Mudhole, a saltwater spring off Ft. Myers Beach. These features are relatively small habitats by standards of aerial coverage, but are probably more common than previously thought. These habitats are very unique shelf features, a reef in reverse, representing island habitats on the Florida shelf. This study was initiated in summer 2005 to describe the biota associated with the offshore blue hole features of this region and search for new sites. Eleven sites off the west central Florida coast have been verified and data has been collected at eight locations, all greater than 30 miles offshore. Most blue holes exhibit similar structural features, which divide the biota into zones. Pelagic species, such as amberjack, occupy the water column above the holes and reef species populate the rim. All of the sites investigated harbor one or more goliath grouper (Epinephelus itajara) and most of the features have resident nurse sharks (Ginglymostoma cirratum). Pelagic sharks periodically visit the sites and sea turtles are frequently observed at or near the holes. Whale sharks (Rhincodon typus) also seem to have an affinity for these features. The reef fauna that occupy the rim rapidly decline in abundance and diversity deeper into the holes with the deepest fauna being calcareous tube dwelling polychaetes that grow down to the edges of the hydrogen sulfide layer. There is pronounced temperature stratification within all holes. All of the sites investigated to date are relatively deep, by standards of recreational scuba diving, and divers utilized open circuit trimix to conduct the investigations. The key components of the documentation of the features included; vertical video transects, still photography, collections of biota, placement of recording thermographs and conductivity meters, collection of bottom sediment and rocks. During the course of the investigation a previously unknown cave feature over 45 meters in height and 76 meters in bottom diameter was discovered and dubbed Megadome. The cave is connected to the Gulf by a circular shaft approximately 0.75 meters in diameter and 11 meters in length. Instrumentation placed at Megadome revealed lunar tidal period water exchange, possible freshwater outflow and water movement in response to hurricanes. The upper portion of the cave contains a fouling community of sponges worms, tunicates and other organisms. A sink hole off the mouth of Tampa Bay was shown to contain a saltwater spring, venting at 72 m (235 fsw). Research is continuing. This research has been supported by a grant from NOAA, Ocean Exploration Program and Mote Marine Laboratory.

Clinical Analysis of Midfacial Fractures

PubMed Central

Yamamoto, Kazuhiko; Matsusue, Yumiko; Horita, Satoshi; Murakami, Kazuhiro; Sugiura, Tsutomu; Kirita, Tadaaki

2014-01-01

Purpose: To analyze the features of midfacial fractures. Methods: Data of 320 patients treated for midfacial fractures during the past 10 years were retrospectively analyzed. Results: Patients were 192 male and 128 female. Their age ranged from 1 to 96 years old with the average of 42.1. Injury most frequently occurred by traffic accidents in 168 patients, followed by falls in 78, assaults in 31 and sports in 25. Pattern of the fractures was classified into zygoma in 159 patients, alveolus in 60, multiple sites in 54, maxilla in 45 and nasal bone in 2. Facial injury severity scale ranged from 1 to 12 with the average of 1.52. Injuries to other sites of the body were found in 90 patients. Fractures of multiple sites showed higher facial injury severity scale and were associated with injuries to other sites of the body at a higher rate. Observation was most frequently chosen in 153 patients, followed by open reduction and internal fixation in 72, intramaxillary fixation in 43 and transcutaneous reduction in 26. Conclusions: Midfacial fractures showed a variety of features in terms of the site and severity and associated injuries. Understanding these features is important to manage these patients properly. PMID:24757396

Mud Volcanoes - A New Class of Sites for Geological and Astrobiological Exploration of Mars

NASA Technical Reports Server (NTRS)

Allen, C.C.; Oehler, D.Z.; Baker, D.M.

2009-01-01

Mud volcanoes provide a unique low-temperature window into the Earth s subsurface - including the deep biosphere - and may prove to be significant sources of atmospheric methane. The identification of analogous features on Mars would provide an important new class of sites for geological and astrobiological exploration. We report new work suggesting that features in Acidalia Planitia are most consistent with their being mud volcanoes.

Gravity Survey of the Rye Patch KGRA, Rye Patch, Nevada

NASA Astrophysics Data System (ADS)

Mcdonald, M. R.; Gosnold, W. D.

2011-12-01

The Rye Patch Known Geothermal Resource Area (KGRA) is located in Pershing County Nevada on the west side of the Humboldt Range and east of the Rye Patch Reservoir approximately 200 km northeast of Reno, Nevada. Previous studies include an earlier gravity survey, 3-D seismic reflection, vertical seismic profiling (VSP) on a single well, 3-D seismic imaging, and a report of the integrated seismic studies. Recently, Presco Energy conducted an aeromagnetic survey and is currently in the process of applying 2-D VSP methods to target exploration and production wells at the site. These studies have indicated that geothermal fluid flow primarily occurs along faults and fractures and that two potential aquifers include a sandstone/siltstone member of the Triassic Natchez Pass Formation and a karst zone that occurs at the interface between Mesozoic limestone and Tertiary volcanics. We hypothesized that addition of a high-resolution gravity survey would better define the locations, trends, lengths, and dip angles of faults and possible solution cavity features. The gravity survey encompassed an area of approximately 78 km2 (30 mi2) within the boundary of the KGRA along with portions of 8 sections directly to the west and 8 sections directly to the east. The survey included 203 stations that were spaced at 400 m intervals. The simple Bouguer anomaly patterns were coincident with elevation, and those patterns remained after terrain corrections were performed. To remove this signal, the data were further processed using wave-length (bandpass) filtering techniques. The results of the filtering and comparison with the recent aeromagnetic survey indicate that the location and trend of major fault systems can be identified using this technique. Dip angles can be inferred by the anomaly contour gradients. By further reductions in the bandpass window, other features such as possible karst solution channels may also be recognizable. Drilling or other geophysical methods such as a magnetotelluric survey may assist in confirming the results. However, lengths of the features were difficult to interpret as the wavelength filtering tends to truncate features in accordance with the bandpass window. Additional gravity measurements would aid in providing higher resolution for the identification and interpretation of features, particularly in the vicinity of the Humboldt House to the north and in an area located to the south of the study area where a large feature was identified in both the aeromagnetic and gravity surveys.

Prediction of human disease-associated phosphorylation sites with combined feature selection approach and support vector machine.

PubMed

Xu, Xiaoyi; Li, Ao; Wang, Minghui

2015-08-01

Phosphorylation is a crucial post-translational modification, which regulates almost all cellular processes in life. It has long been recognised that protein phosphorylation has close relationship with diseases, and therefore many researches are undertaken to predict phosphorylation sites for disease treatment and drug design. However, despite the success achieved by these approaches, no method focuses on disease-associated phosphorylation sites prediction. Herein, for the first time the authors propose a novel approach that is specially designed to identify associations between phosphorylation sites and human diseases. To take full advantage of local sequence information, a combined feature selection method-based support vector machine (CFS-SVM) that incorporates minimum-redundancy-maximum-relevance filtering process and forward feature selection process is developed. Performance evaluation shows that CFS-SVM is significantly better than the widely used classifiers including Bayesian decision theory, k nearest neighbour and random forest. With the extremely high specificity of 99%, CFS-SVM can still achieve a high sensitivity. Besides, tests on extra data confirm the effectiveness and general applicability of CFS-SVM approach on a variety of diseases. Finally, the analysis of selected features and corresponding kinases also help the understanding of the potential mechanism of disease-phosphorylation relationships and guide further experimental validations.

Discovering the Ancient Maya from Space

NASA Technical Reports Server (NTRS)

Sever, T. L.

2008-01-01

The Pet6n region of northern Guatemala contains some of the most significant Mayan archeological sites in Latin America. It was in this region that the Maya civilization began, flourished, and abruptly disappeared. Remote sensing technology is helping to locate and map ancient Maya sites that are threatened today by accelerating deforestation and looting. Thematic Mapper, IKONOS, and QuickBird satellite, and airborne STAR-3i and AIRSAR radar data, combined with Global Positioning System (GPS) technology, are successfully detecting ancient Maya features such as sites, roadways, canals, and water reservoirs. Satellite imagery is also being used to map the bajos, which are seasonally flooded swamps that cover over 40% of the land surface. Through the use of various airborne and satellite sensor systems we have been able to detect and map ancient causeways, temples, reservoirs, and land forms, and locate these features on the ground through GPS technology. Recently, we have discovered that there is a strong relationship between a tropical forest vegetation signature in satellite imagery and the location of archeological sites. We believe that the use of limestone and lime plasters in ancient Maya construction affects the moisture, nutrition, and plant species of the surface vegetation. We have mapped these vegetation signatures in the imagery and verified through field survey that they are indicative of archeological sites. Through the use of remote sensing and GIS technology it is possible to identify unrecorded archeological features in a dense tropical forest environment and monitor these cultural features for their protection.

Discovering the Ancient Maya From Space

NASA Technical Reports Server (NTRS)

Sever, T. L.

2007-01-01

The Peten region of northern Guatemala contains some of the most significant Mayan archeological sites in Latin America. It was in this region that the Maya civilization began, flourished, and abruptly disappeared. Remote sensing technology is helping to locate and map ancient Maya sites that are threatened today by accelerating deforestation and looting. Thematic Mapper, IKONOS, and QuickBird satellite, and airborne STAR-3i and AIRSAR radar data, combined with Global Positioning System (GPS) technology, are successfully detecting ancient Maya features such as sites, roadways, canals, and water reservoirs. Satellite imagery is also being used to map the bajos, which are seasonally flooded swamps that cover over 40% of the land surface. Through the use of various airborne and satellite sensor systems we have been able to detect and map ancient causeways, temples, reservoirs, and land forms, and locate these features on the ground through GPS technology. Recently, we have discovered that there is a strong relationship between a tropical forest vegetation signature in satellite imagery and the location of archeological sites. We believe that the use o f limestone and lime plasters in ancient Maya construction affects the moisture, nutrition, and plant species of the surface vegetation. We have mapped these vegetation signatures in the imagery and verified through field survey that they are indicative of archeological sites. Through the use of remote sensing and GIS technology it is possible to identify unrecorded archeological features in a dense tropical forest environment and monitor these cultural features for their protection.

Parkes full polarization spectra of OH masers - II. Galactic longitudes 240° to 350°

NASA Astrophysics Data System (ADS)

Caswell, J. L.; Green, J. A.; Phillips, C. J.

2014-04-01

Full polarization measurements of 1665 and 1667 MHz OH masers at 261 sites of massive star formation have been made with the Parkes radio telescope. Here, we present the resulting spectra for 157 southern sources, complementing our previously published 104 northerly sources. For most sites, these are the first measurements of linear polarization, with good spectral resolution and complete velocity coverage. Our spectra exhibit the well-known predominance of highly circularly polarized features, interpreted as σ components of Zeeman patterns. Focusing on the generally weaker and rarer linear polarization, we found three examples of likely full Zeeman triplets (a linearly polarized π component, straddled in velocity by σ components), adding to the solitary example previously reported. We also identify 40 examples of likely isolated π components, contradicting past beliefs that π components might be extremely rare. These were recognized at 20 sites where a feature with high linear polarization on one transition is accompanied on the other transition by a matching feature, at the same velocity and also with significant linear polarization. Large velocity ranges are rare, but we find eight exceeding 25 km s-1, some of them indicating high-velocity blue-shifted outflows. Variability was investigated on time-scales of one year and over several decades. More than 20 sites (of 200) show high variability (intensity changes by factors of 4 or more) in some prominent features. Highly stable sites are extremely rare.

THE FINE STRUCTURE OF GREEN BACTERIA

PubMed Central

Cohen-Bazire, Germaine; Pfennig, Norbert; Kunisawa, Riyo

1964-01-01

The fine structure of several strains of green bacteria belonging to the genus Chlorobium has been studied in thin sections with the electron microscope. In addition to having general cytological features typical of Gram-negative bacteria, the cells of these organisms always contain membranous mesosomal elements, connected with the cytoplasmic membrane, and an elaborate system of isolated cortical vesicles, some 300 to 400 A wide and 1000 to 1500 A long. The latter structures, chlorobium vesicles, have been isolated in a partly purified state by differential centrifugation of cell-free extracts. They are associated with a centrifugal fraction that has a very high specific chlorophyll content. In all probability, therefore, the chlorobium vesicles are the site of the photosynthetic apparatus of green bacteria. PMID:14195611

Accurate in silico prediction of species-specific methylation sites based on information gain feature optimization.

PubMed

Wen, Ping-Ping; Shi, Shao-Ping; Xu, Hao-Dong; Wang, Li-Na; Qiu, Jian-Ding

2016-10-15

As one of the most important reversible types of post-translational modification, protein methylation catalyzed by methyltransferases carries many pivotal biological functions as well as many essential biological processes. Identification of methylation sites is prerequisite for decoding methylation regulatory networks in living cells and understanding their physiological roles. Experimental methods are limitations of labor-intensive and time-consuming. While in silicon approaches are cost-effective and high-throughput manner to predict potential methylation sites, but those previous predictors only have a mixed model and their prediction performances are not fully satisfactory now. Recently, with increasing availability of quantitative methylation datasets in diverse species (especially in eukaryotes), there is a growing need to develop a species-specific predictor. Here, we designed a tool named PSSMe based on information gain (IG) feature optimization method for species-specific methylation site prediction. The IG method was adopted to analyze the importance and contribution of each feature, then select the valuable dimension feature vectors to reconstitute a new orderly feature, which was applied to build the finally prediction model. Finally, our method improves prediction performance of accuracy about 15% comparing with single features. Furthermore, our species-specific model significantly improves the predictive performance compare with other general methylation prediction tools. Hence, our prediction results serve as useful resources to elucidate the mechanism of arginine or lysine methylation and facilitate hypothesis-driven experimental design and validation. The tool online service is implemented by C# language and freely available at http://bioinfo.ncu.edu.cn/PSSMe.aspx CONTACT: jdqiu@ncu.edu.cnSupplementary information: Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Characterization and evaluation of channel and hillslope erosion on the Zuni Indian Reservation, New Mexico, 1992-95

USGS Publications Warehouse

Gellis, A.C.

1998-01-01

Like many areas of the southwestern United States, the Zuni Indian Reservation, New Mexico, has high rates of erosion, ranging from 95 to greater than 1,430 cubic meters per square kilometer per year. Erosion on the Zuni Indian Reservation includes channel erosion (arroyo incision and channel widening) and hillslope (sheetwash) erosion. The U.S. Geological Survey conducted a 3-year (1992-95) study on channel erosion and hillslope erosion in the portion of the Rio Nutria watershed that drains entirely within the Zuni Indian Reservation. Results of the study can be used by the Zuni Tribe to develop a plan for watershed rehabilitation. Channel changes, gully growth, headcuts, and changes in dirt roads over time were examined to characterize and evaluate channel erosion in the Rio Nutria watershed. Channel cross-sectional changes included width, depth, width-to-depth ratio, area, and geometry. Relative rates of gully growth, headcuts, and changes in dirt roads over time were examined using aerial photographs. Results of resurveys conducted between 1992 and 1994 of 85 channel cross sections indicated aggradation of 72 percent of cross sections in three subbasins of the Rio Nutria watershed. Forty-eight percent of resurveyed cross sections showed an increase in cross-sectional area and erosion; nine of these are in tributaries. Some channels (43 percent) aggraded and increased in cross-sectional area. This increase in cross- sectional area is due mostly to widening. Channel widening is a more pervasive form of erosion than channel scour on the Zuni Indian Reservation. The tops of channels widened in 67 percent and the bottoms of channels widened in 44 percent of resurveyed cross sections. Narrow, deep triangular channels are more erosive than rectangular cross sections. Five land-cover types--three sites on mixed-grass pasture, two sites on sites on unchained pi?on and juniper, one site on sagebrush, one site on ponderosa pine, and two sites on chained pi?on and juniper--were each instrumented with sediment traps between 1992 and 1994 to measure hillslope erosion. Highest sediment yields were measured at chained areas and mixed- grass pasture. Annual yields from sites that were operated for more than a year were 11.7, 6.0, and 6.5 metric tons per square kilometer per year at a pi?on and juniper site, mixed-grass pasture site, and sagebrush site, respectively.

Studying the Permian Cross-section (Volga Region) Using Chemical and Isotopic Investigations

NASA Astrophysics Data System (ADS)

Gareev, B. I.; Batalin, G. A.; Nurgalieva, N. G.; Nourgaliev, D. K.

2016-12-01

This paper presents a study of international important site: the cross-section of Permian system's Urzhumian Stagein the ravine "Pechischy". Outcrop is located on the right bank of the Volga River (about 10 km West of Kazan). Ithas local, regional and planetary correlation features and also footprints of different geographical scale events.The main objective in the research is the deep study of sediments using chemical and isotopic investigations. XRFspectrometer was used for chemical investigations of samples. Chemistry of carbonates and clastic rocks includesthe analysis of chemical elements, compounds, petrochemical (lithogeochemical) modules for the interpretationof the genesis of lithotypes. For the review of the geochemistry of stable isotopes of carbon (oxygen) we usedIRMS. The main objective is the nature of the isotope fractionation issues, to addressing the issues of stratigraphyand paleogeography.The measurements have shown the variability of chemical parameters in cross-section. It gives us opportunity tosee small changes in sedimentation and recognize the factors that influence to the process.The work was carried out according to the Russian Government's Program of Competitive Growth of KazanFederal University, supported by the grant provided to the Kazan State University for performing the state programin the field of scientific research.

Nitrate and periplasmic nitrate reductases

PubMed Central

Sparacino-Watkins, Courtney; Stolz, John F.; Basu, Partha

2014-01-01

The nitrate anion is a simple, abundant and relatively stable species, yet plays a significant role in global cycling of nitrogen, global climate change, and human health. Although it has been known for quite some time that nitrate is an important species environmentally, recent studies have identified potential medical applications. In this respect the nitrate anion remains an enigmatic species that promises to offer exciting science in years to come. Many bacteria readily reduce nitrate to nitrite via nitrate reductases. Classified into three distinct types – periplasmic nitrate reductase (Nap), respiratory nitrate reductase (Nar) and assimilatory nitrate reductase (Nas), they are defined by their cellular location, operon organization and active site structure. Of these, Nap proteins are the focus of this review. Despite similarities in the catalytic and spectroscopic properties Nap from different Proteobacteria are phylogenetically distinct. This review has two major sections: in the first section, nitrate in the nitrogen cycle and human health, taxonomy of nitrate reductases, assimilatory and dissimilatory nitrate reduction, cellular locations of nitrate reductases, structural and redox chemistry are discussed. The second section focuses on the features of periplasmic nitrate reductase where the catalytic subunit of the Nap and its kinetic properties, auxiliary Nap proteins, operon structure and phylogenetic relationships are discussed. PMID:24141308

40 CFR 60.2050 - What is a siting analysis?

Code of Federal Regulations, 2014 CFR

2014-07-01

...? (a) The siting analysis must consider air pollution control alternatives that minimize, on a site... air pollution control alternatives specified in paragraph (a) of this section. (c) You must complete... Section 60.2050 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR PROGRAMS...

40 CFR 60.2050 - What is a siting analysis?

Code of Federal Regulations, 2013 CFR

2013-07-01

...? (a) The siting analysis must consider air pollution control alternatives that minimize, on a site... air pollution control alternatives specified in paragraph (a) of this section. (c) You must complete... Section 60.2050 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR PROGRAMS...

Environmental restoration and waste management: Robotics technology development program: Robotics 5-year program plan

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

In FY 1990 Robotics Technology Development Program (RTDP) planning teams visited five DOE sites. These sites were selected by the Office of Technology Development to provide a needs basis for developing a 5-Year Plan. Visits to five DOE sites provided identification of needs for robotics technology development to support Environmental Restoration and Waste Management (ER WM) projects at those sites. Additional site visits will be conducted in the future to expand the planning basis. This volume summarizes both the results of the site visits and the needs and requirements of the priority ER WM activities at the sites, including potentialmore » needs for robotics and remote systems technology. It also discusses hazards associated with the site activities and any problems or technical uncertainties associated with dealing with the hazards in the performance of the ER WM work. Robotic or remote systems currently under development for remediation projects or waste operations are also discussed. The information in this document is organized principally by site, activity, and priority. Section 2.0, Site Needs, is based on information from the site visit reports and provides a summary which focuses on the site needs and requirements for each priority activity. Section 2.0 also records evaluations and discussions by the RTDP team following the site visit. Section 3.0, Commonality Assessment, documents similar site needs where common, or cross-cutting, robotics technology might be applied to several activities. Section 4.0 contains a summary of the site needs and requirements in tabular form. 1 tab.« less

Individual variation in nest size and nest site features of the Bornean orangutans (Pongo pygmaeus).

PubMed

Rayadin, Yaya; Saitoh, Takashi

2009-05-01

Nest construction is a daily habit of independent orangutans for sleeping or resting. Data on their nests have been used in various ecological studies (e.g., density estimation, ranging behavior, evolution of material culture) because they are the most observable field signs. We investigated nest size and nest site features of Bornean orangutans in the wild during 10 months' fieldwork at three sites in East Kalimantan, Indonesia: Kutai National Park, Birawa, and Meratus. To examine individual variation, we followed 31 individual orangutans and recorded the 92 nests they made for nest size (diameter) and nest site features (height of nest above ground, tree species used for the nest site, the diameter and height of the tree, whether the nest was new or reused, and nest location within the tree). Analyses taking age-sex classes of the focal individuals into consideration showed significant age-sex differences in nest size and location, but not in nest height or nest tree features (diameter, height of tree, and height of lowest branch). Mature orangutans (adult females, unflanged and flanged males) made larger nests than immatures (juveniles and adolescents). Flanged male orangutans with larger nests used stable locations for nesting sites and reused old nests more frequently than immatures. The overall proportion of nests in open (exposed) locations was higher than in closed (sheltered) locations. Flanged males and immatures frequently made open nests, whereas adult females with an infant preferred closed locations. The good correspondence between nest size and age-sex classes indicates that nest size variation may reflect body size and therefore age-sex variation in the population. (c) 2009 Wiley-Liss, Inc.

A deep learning framework for modeling structural features of RNA-binding protein targets

PubMed Central

Zhang, Sai; Zhou, Jingtian; Hu, Hailin; Gong, Haipeng; Chen, Ligong; Cheng, Chao; Zeng, Jianyang

2016-01-01

RNA-binding proteins (RBPs) play important roles in the post-transcriptional control of RNAs. Identifying RBP binding sites and characterizing RBP binding preferences are key steps toward understanding the basic mechanisms of the post-transcriptional gene regulation. Though numerous computational methods have been developed for modeling RBP binding preferences, discovering a complete structural representation of the RBP targets by integrating their available structural features in all three dimensions is still a challenging task. In this paper, we develop a general and flexible deep learning framework for modeling structural binding preferences and predicting binding sites of RBPs, which takes (predicted) RNA tertiary structural information into account for the first time. Our framework constructs a unified representation that characterizes the structural specificities of RBP targets in all three dimensions, which can be further used to predict novel candidate binding sites and discover potential binding motifs. Through testing on the real CLIP-seq datasets, we have demonstrated that our deep learning framework can automatically extract effective hidden structural features from the encoded raw sequence and structural profiles, and predict accurate RBP binding sites. In addition, we have conducted the first study to show that integrating the additional RNA tertiary structural features can improve the model performance in predicting RBP binding sites, especially for the polypyrimidine tract-binding protein (PTB), which also provides a new evidence to support the view that RBPs may own specific tertiary structural binding preferences. In particular, the tests on the internal ribosome entry site (IRES) segments yield satisfiable results with experimental support from the literature and further demonstrate the necessity of incorporating RNA tertiary structural information into the prediction model. The source code of our approach can be found in https://github.com/thucombio/deepnet-rbp. PMID:26467480

Site quality relationships for shortleaf pine

Treesearch

David L. Graney

1986-01-01

Existing information about site quality relationships for shortleaf pine (Pinus echinata Mill.) in the southeastern United States is reviewed in this paper. Estimates of site quality, whether from direct tree measurements or indirect estimates based on soil and site features, are only local observations for many points on the landscape. To be of value to the land...

Social Networking Sites and Language Learning

ERIC Educational Resources Information Center

Brick, Billy

2011-01-01

This article examines a study of seven learners who logged their experiences on the language leaning social networking site Livemocha over a period of three months. The features of the site are described and the likelihood of their future success is considered. The learners were introduced to the Social Networking Site (SNS) and asked to learn a…

40 CFR 228.6 - Specific criteria for site selection.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 40 Protection of Environment 25 2011-07-01 2011-07-01 false Specific criteria for site selection... selection. (a) In the selection of disposal sites, in addition to other necessary or appropriate factors...) Existence at or in close proximity to the site of any significant natural or cultural features of historical...

Mounting ground sections of teeth: Cyanoacrylate adhesive versus Canada balsam

PubMed Central

Vangala, Manogna RL; Rudraraju, Amrutha; Subramanyam, RV

2016-01-01

Introduction: Hard tissues can be studied by either decalcification or by preparing ground sections. Various mounting media have been tried and used for ground sections of teeth. However, there are very few studies on the use of cyanoacrylate adhesive as a mounting medium. Aims: The aim of our study was to evaluate the efficacy of cyanoacrylate adhesive (Fevikwik™) as a mounting medium for ground sections of teeth and to compare these ground sections with those mounted with Canada balsam. Materials and Methods: Ground sections were prepared from twenty extracted teeth. Each section was divided into two halves and mounted on one slide, one with cyanoacrylate adhesive (Fevikwik™) and the other with Canada balsam. Scoring for various features in the ground sections was done by two independent observers. Statistical Analysis Used: Statistical analysis using Student's t-test (unpaired) of average scores was performed for each feature observed. Results: No statistically significant difference was found between the two for most of the features. However, cyanoacrylate was found to be better than Canada balsam for observing striae of Retzius (P < 0.0205), enamel lamellae (P < 0.036), dentinal tubules (P < 0.0057), interglobular dentin (P < 0.0001), sclerotic dentin – transmitted light (P < 0.00001), sclerotic dentin – polarized light (P < 0.0002) and Sharpey's fibers (P < 0.0004). Conclusions: This initial study shows that cyanoacrylate is better than Canada balsam for observing certain features of ground sections of teeth. However, it remains to be seen whether it will be useful for studying undecalcified sections of carious teeth and for soft tissue sections. PMID:27194857

Measuring interactivity on tobacco control websites.

PubMed

Freeman, Becky; Chapman, Simon

2012-08-01

With the increased reach of Web 2.0, Internet users expect webpages to be interactive. No studies have been conducted to assess whether tobacco control-relevant sites have implemented these features. The authors conducted an analysis of an international sample of tobacco control-relevant websites to determine their level of interactivity. The sample included 68 unique websites selected from Google searches in 5 countries, on each country's Google site, using the term smoking. The 68 sites were analyzed for 10 categories of interactive tools. The most common type of interactive content found on 46 (68%) of sites was for multimedia featuring content that was not primarily text based, such as photo galleries, videos, or podcasts. Only 11 (16%) websites-outside of media sites-allowed people to interact and engage with the site owners and other users by allowing posting comments on content and/or hosting forums/discussions. Linkages to social networking sites were low: 17 pages (25%) linked to Twitter, 15 (22%) to Facebook, and 11 (16%) to YouTube. Interactivity and connectedness to online social media appears to still be in its infancy among tobacco control-relevant sites.

Vigil Network sites: A sample of data for permanent filing

USGS Publications Warehouse

Leopold, Luna Bergere; Emmett, William W.

1965-01-01

The Vigil Network consists of places where observations are made through time to record changes in landscape features over a long period. Resurveys will usually be made once each year or every few years and the period of observation, hopefully, will extend through and beyond the International Hydrological Decade.Vigil Network sites will usually be chosen to represent some typical feature of a given landscape. In the example shown here, the feature is a small ephemeral channel in a basin of moderate relief underlain by silty sandstone typical of the surrounding area. Vigil sites are not protected from man's influence and indeed may be selected because of the possible or portending cultural influences. In this respect they differ from the Bench Mark Network whose purpose is to make precise observations of hydrologic factors in areas uninfluenced by and protected from man's use.The factors which might be observed are many and varied. A few might be mentioned here, others are explained at length elsewhere (Miller and Leopold, 1963; Leopold, 1962). Streamchannel position, form, depth, and profile; vegetation in form of transects or quadrats; soil movement on slopes; rock movement on slopes or in channels. These and many more would yield valuable information on changes with time.To assure permanence of initial field observations, including reference points, bench marks, and cross sections, brief descriptions, maps, and initial data should be filed identically in designated repositories where the data will be made available for inspection by any interested scientist. It is recommended that the designation of two such locations where records of the type here attached will be filed be taken up by the Coordinating Council of the International Hydrological Decade. In designating such repositories it should be recognized that there is no need for elaborate indexing. The main requirement is merely the maintenance of a simple file where the data are stored and can be inspected or copied by any scientist. There need be no special provision for lending or reproduction services.The present document is an example showing what data, maps, and descriptions should be included in those permanent files at the two repositories. The material in these repositories should be sufficient to permit someone in the indefinite future to find and remeasure the same features described now. Thus the scientific value of the original surveys increases with time, - provided that the descriptions are sufficient to allow a person to find with assurance the original feature in the field.It must be visualized that a permanent repository must economize in space. Thus, as the example here shows, the filed material is not all of the original field notes but a summary, brief but descriptive.

Morphological features of coronary arteries and lesions in hearts from five species of sharks collected from the northwestern Atlantic Ocean.

PubMed

Borucinska, J D; Obasa, O A; Haffey, N M; Scott, J P; Williams, L N; Baker, S M; Min, S J; Kaplan, A; Mudimala, R

2012-10-01

Morphological features of coronary arteries and incidental lesions are reported from hearts in five species of sharks, the shortfin mako shark, Isurus oxyrhinchus Rafinesque, thresher shark Alopias vulpinus (Bonaterre), blue shark, Prionace glauca L., the smooth dogfish, Mustelus canis (Mitchill), and spiny dogfish, Squalus acanthias L. Sharks were collected from the northwestern Atlantic between June and August from 1996 to 2010. They were necropsied dockside and the hearts were preserved in buffered formalin. Routine sections including ventricle/conus arteriosus and the atrio-ventricular junctions were embedded in paraffin, stained with common histological and immunohistochemical methods and examined by brightfield microscopy. Myointimal hyperplasia, medial myo-myxomatous hyperplasia and bifurcation pads were observed commonly, and medial muscle reorientation and epicardial myeloid tissues were rare. All the above features differed in severity, prevalence and distribution depending on anatomical site and shark species/size. Morphometric analysis indicated that myomyxomatous hyperplasia is associated with luminal narrowing of blood vessels. As suggested previously, the described morphological features are most likely physiological responses to blood flow characteristics. Vascular and cardiac lesions were uncommon and included, granulomatous proliferative epicarditis with fibroepitheliomas, myxomatous epicardial expansions, medial arterial vacuolation, myocardial fibrosis, acute ventricular emboli and parasitic granulomas. The lesions of embolism, proliferative and granulomatous epicarditis and myocardial fibrosis were in all sharks associated with capture events including retained fishing hooks. The significance and aetiopathogenesis of medial vacuolation and epicardial myxomatous expansions remains unclear. © 2012 Blackwell Publishing Ltd.

Oncocytic metaplasia in inflammatory fibrous hyperplasia: Histopathological and immunohistochemical analysis.

PubMed

Rangel, Ana Lúcia Carrinho Ayrosa; León, Jorge Esquiche; Jorge, Jacks; Lopes, Márcio Ajudarte; Vargas, Pablo Agustín

2008-03-01

Oncocytic metaplasia (OM) is not a well-known feature in inflammatory fibrous hyperplasia (IFH) lesions, although it may be common, as proposed in our previous study about this lesion. In the present paper, we assessed the histopathological and immunohistochemical features of 18 cases of IFH containing OM areas. All the samples were examined on haematoxylin and eosin stained sections and cytokeratins (AE1/AE3, 34betaE12, CK5, CK7, CK8, CK13, CK14 and CK19), CD15, CD20, CD68, CD45Ro, and LCA primary antibodies were used. The vast majority of IFH occurred in women (n=14) and the most common site of presentation was the buccal vestibule. Oncocytic and salivary duct cells showed uniform immunoreactivity for AE1/AE3, CK7, CK8 and CK19. CD45Ro+ T-lymphocytes were the most common inflammatory cells surrounding the OM areas followed by CD20+ B-lymphocytes. These findings suggest that oncocytic cells present in IFH might develop from salivary duct epithelium, and T-lymphocytes might play an important role in its etiopathogenesis.

Large area sub-micron chemical imaging of magnesium in sea urchin teeth.

PubMed

Masic, Admir; Weaver, James C

2015-03-01

The heterogeneous and site-specific incorporation of inorganic ions can profoundly influence the local mechanical properties of damage tolerant biological composites. Using the sea urchin tooth as a research model, we describe a multi-technique approach to spatially map the distribution of magnesium in this complex multiphase system. Through the combined use of 16-bit backscattered scanning electron microscopy, multi-channel energy dispersive spectroscopy elemental mapping, and diffraction-limited confocal Raman spectroscopy, we demonstrate a new set of high throughput, multi-spectral, high resolution methods for the large scale characterization of mineralized biological materials. In addition, instrument hardware and data collection protocols can be modified such that several of these measurements can be performed on irregularly shaped samples with complex surface geometries and without the need for extensive sample preparation. Using these approaches, in conjunction with whole animal micro-computed tomography studies, we have been able to spatially resolve micron and sub-micron structural features across macroscopic length scales on entire urchin tooth cross-sections and correlate these complex morphological features with local variability in elemental composition. Copyright © 2015 Elsevier Inc. All rights reserved.

40 CFR 60.2895 - What is a siting analysis?

Code of Federal Regulations, 2014 CFR

2014-07-01

... What is a siting analysis? (a) The siting analysis must consider air pollution control alternatives... consideration of air pollution control alternatives specified in paragraph (a) of this section. (c) You must... Section 60.2895 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR PROGRAMS...

40 CFR 60.2895 - What is a siting analysis?

Code of Federal Regulations, 2013 CFR

2013-07-01

... What is a siting analysis? (a) The siting analysis must consider air pollution control alternatives... consideration of air pollution control alternatives specified in paragraph (a) of this section. (c) You must... Section 60.2895 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR PROGRAMS...

40 CFR 60.2895 - What is a siting analysis?

Code of Federal Regulations, 2012 CFR

2012-07-01

... What is a siting analysis? (a) The siting analysis must consider air pollution control alternatives... consideration of air pollution control alternatives specified in paragraph (a) of this section. (c) You must... Section 60.2895 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR PROGRAMS...

An RNAi-Enhanced Logic Circuit for Cancer Specific Detection and Destruction

DTIC Science & Technology

2013-02-01

monomeric protein secreted by Corynebacterium diphtheriae, and pro-apoptotic members of Bcl-2 family: mBax (Mus musculus), hBax ( Homo sapiens ), and its...Gata3 mStaple. Intron- feature sequences – donor site, branch point, poly- pyrimidine tract, and acceptor site – were selected based on previously...sequences found in literature our intron features were chosen according SplicePort [4], an online analyzer that detects the likelihood of splicing to

Geoheritage Values at Greenmantle Farm

NASA Astrophysics Data System (ADS)

Etches, J. D.

2009-05-01

The Greenmantle Farm occurrence near Wilberforce, Ontario is a marble feature within the Grenville Province of the Precambrian Shield that hosts a diverse suite of amphibole minerals. The marble is of undetermined petrogenesis, and is possibly either a primary carbonatite intrusion or a derived melt of metasedimentary origin. The site is the type locality for the rare mineral fluorrichterite. Other minerals of note are orthoclase and apatite. Crystal size is relatively large, and all minerals, with the exception of calcite, exhibit generally good to excellent euhedral form. Of note is that the mineral occurrences at this site have not been subjected to any human disturbance including mechanical or hand tool disruption. The site also provides excellent examples of a number of geological features and ecosystem dynamics. In particular, faulting, moisture regime landscape interrelationships, order of crystallization in zoned dykes, and calciphile plant associations are demonstrated. This site represents an exceptional viewing opportunity of an unspoiled mineral occurrence while providing illustrative examples of the interrelationship of abiotic and biotic features. In terms of research, the site will prove to be a valuable subject in regard to amphibole composition, amphibole differentiation in calcareous melts, and will ultimately provide insight into the formation of the occurrence. Determination of what circumstances these marble bodies formed under would add a significant piece of information to the complex history of the Grenville province. This research will be assisted by the completely uncompromised nature of the site. The potential educational value of the site for researchers and grade school students alike is exceptional.

Electromagnetic exploration in high-salinity groundwater zones: case studies from volcanic and soft sedimentary sites in coastal Japan

NASA Astrophysics Data System (ADS)

Suzuki, Koichi; Kusano, Yukiko; Ochi, Ryota; Nishiyama, Nariaki; Tokunaga, Tomochika; Tanaka, Kazuhiro

2017-01-01

Estimating the spatial distribution of groundwater salinity in coastal plain regions is becoming increasingly important for site characterisation and the prediction of hydrogeological environmental conditions resulting from radioactive waste disposal and underground CO2 storage. In previous studies of the freshwater-saltwater interface, electromagnetic methods were used for sites characterised by unconsolidated deposits or Neocene soft sedimentary rocks. However, investigating the freshwater-saltwater interface in hard rock sites (e.g. igneous areas) is more complex, with the permeability of the rocks greatly influenced by fractures. In this study, we investigated the distribution of high-salinity groundwater at two volcanic rock sites and one sedimentary rock site, each characterised by different hydrogeological features. Our investigations included (1) applying the controlled source audio-frequency magnetotelluric (CSAMT) method and (2) conducting laboratory tests to measure the electrical properties of rock core samples. We interpreted the 2D resistivity sections by referring to previous data on geology and geochemistry of groundwater. At the Tokusa site, an area of inland volcanic rocks, low resistivity zones were detected along a fault running through volcanic rocks and shallow sediments. The results suggest that fluids rise through the Tokusa-Jifuku Fault to penetrate shallow sediments in a direction parallel to the river, and some fluids are diluted by rainwater. At the Oki site, a volcanic island on a continental shelf, four resistivity zones (in upward succession: low, high, low and high) were detected. The results suggest that these four zones were formed during a transgression-regression cycle caused by the last glacial period. At the Saijo site, located on a coastal plain composed of thick sediments, we observed a deep low resistivity zone, indicative of fossil seawater remnant from a transgression after the last glacial period. The current coastal plain formed in historical times, following which fresh water penetrated the upper parts of the fossil seawater zone to form a freshwater aquifer ~200 m in thickness.

DOE Office of Scientific and Technical Information (OSTI.GOV)

M. A. Wasiolek

The purpose of this report is to document the biosphere model, the Environmental Radiation Model for Yucca Mountain, Nevada (ERMYN), which describes radionuclide transport processes in the biosphere and associated human exposure that may arise as the result of radionuclide release from the geologic repository at Yucca Mountain. The biosphere model is one of the process models that support the Yucca Mountain Project (YMP) Total System Performance Assessment (TSPA) for the license application (LA), the TSPA-LA. The ERMYN model provides the capability of performing human radiation dose assessments. This report documents the biosphere model, which includes: (1) Describing the referencemore » biosphere, human receptor, exposure scenarios, and primary radionuclides for each exposure scenario (Section 6.1); (2) Developing a biosphere conceptual model using site-specific features, events, and processes (FEPs), the reference biosphere, the human receptor, and assumptions (Section 6.2 and Section 6.3); (3) Building a mathematical model using the biosphere conceptual model and published biosphere models (Sections 6.4 and 6.5); (4) Summarizing input parameters for the mathematical model, including the uncertainty associated with input values (Section 6.6); (5) Identifying improvements in the ERMYN model compared with the model used in previous biosphere modeling (Section 6.7); (6) Constructing an ERMYN implementation tool (model) based on the biosphere mathematical model using GoldSim stochastic simulation software (Sections 6.8 and 6.9); (7) Verifying the ERMYN model by comparing output from the software with hand calculations to ensure that the GoldSim implementation is correct (Section 6.10); and (8) Validating the ERMYN model by corroborating it with published biosphere models; comparing conceptual models, mathematical models, and numerical results (Section 7).« less

A reference time scale for Site U1385 (Shackleton Site) on the SW Iberian Margin

NASA Astrophysics Data System (ADS)

Hodell, D.; Lourens, L.; Crowhurst, S.; Konijnendijk, T.; Tjallingii, R.; Jiménez-Espejo, F.; Skinner, L.; Tzedakis, P. C.; Abrantes, Fatima; Acton, Gary D.; Alvarez Zarikian, Carlos A.; Bahr, André; Balestra, Barbara; Barranco, Estefanìa Llave; Carrara, Gabriela; Ducassou, Emmanuelle; Flood, Roger D.; Flores, José-Abel; Furota, Satoshi; Grimalt, Joan; Grunert, Patrick; Hernández-Molina, Javier; Kim, Jin Kyoung; Krissek, Lawrence A.; Kuroda, Junichiro; Li, Baohua; Lofi, Johanna; Margari, Vasiliki; Martrat, Belen; Miller, Madeline D.; Nanayama, Futoshi; Nishida, Naohisa; Richter, Carl; Rodrigues, Teresa; Rodríguez-Tovar, Francisco J.; Roque, Ana Cristina Freixo; Sanchez Goñi, Maria F.; Sierro Sánchez, Francisco J.; Singh, Arun D.; Sloss, Craig R.; Stow, Dorrik A. V.; Takashimizu, Yasuhiro; Tzanova, Alexandrina; Voelker, Antje; Xuan, Chuang; Williams, Trevor

2015-10-01

We produced a composite depth scale and chronology for Site U1385 on the SW Iberian Margin. Using log(Ca/Ti) measured by core scanning XRF at 1-cm resolution in all holes, a composite section was constructed to 166.5 meter composite depth (mcd) that corrects for stretching and squeezing in each core. Oxygen isotopes of benthic foraminifera were correlated to a stacked δ18O reference signal (LR04) to produce an oxygen isotope stratigraphy and age model. Variations in sediment color contain very strong precession signals at Site U1385, and the amplitude modulation of these cycles provides a powerful tool for developing an orbitally-tuned age model. We tuned the U1385 record by correlating peaks in L* to the local summer insolation maxima at 37°N. The benthic δ18O record of Site U1385, when placed on the tuned age model, generally agrees with other time scales within their respective chronologic uncertainties. The age model is transferred to down-core data to produce a continuous time series of log(Ca/Ti) that reflect relative changes of biogenic carbonate and detrital sediment. Biogenic carbonate increases during interglacial and interstadial climate states and decreases during glacial and stadial periods. Much of the variance in the log(Ca/Ti) is explained by a linear combination of orbital frequencies (precession, tilt and eccentricity), whereas the residual signal reflects suborbital climate variability. The strong correlation between suborbital log(Ca/Ti) variability and Greenland temperature over the last glacial cycle at Site U1385 suggests that this signal can be used as a proxy for millennial-scale climate variability over the past 1.5 Ma. Millennial climate variability, as expressed by log(Ca/Ti) at Site U1385, was a persistent feature of glacial climates over the past 1.5 Ma, including glacial periods of the early Pleistocene ('41-kyr world') when boundary conditions differed significantly from those of the late Pleistocene ('100-kyr world'). Suborbital variability was suppressed during interglacial stages and enhanced during glacial periods, especially when benthic δ18O surpassed 3.3-3.5‰. Each glacial inception was marked by appearance of strong millennial variability and each deglaciation was preceded by a terminal stadial event. Suborbital variability may be a symptomatic feature of glacial climate or, alternatively, may play a more active role in the inception and/or termination of glacial cycles.

Building a sense of virtual community: the role of the features of social networking sites.

PubMed

Chen, Chi-Wen; Lin, Chiun-Sin

2014-07-01

In recent years, social networking sites have received increased attention because of the potential of this medium to transform business by building virtual communities. However, theoretical and empirical studies investigating how specific features of social networking sites contribute to building a sense of virtual community (SOVC)-an important dimension of a successful virtual community-are rare. Furthermore, SOVC scales have been developed, and research on this issue has been called for, but few studies have heeded this call. On the basis of prior literature, this study proposes that perceptions of the three most salient features of social networking sites-system quality (SQ), information quality (IQ), and social information exchange (SIE)-play a key role in fostering SOVC. In particular, SQ is proposed to increase IQ and SIE, and SIE is proposed to enhance IQ, both of which thereafter build SOVC. The research model was examined in the context of Facebook, one of the most popular social networking sites in the world. We adopted Blanchard's scales to measure SOVC. Data gathered using a Web-based questionnaire, and analyzed with partial least squares, were utilized to test the model. The results demonstrate that SIE, SQ, and IQ are the factors that form SOVC. The findings also suggest that SQ plays a fundamental role in supporting SIE and IQ in social networking sites. Implications for theory, practice, and future research directions are discussed.

40 CFR 60.2050 - What is a siting analysis?

Code of Federal Regulations, 2012 CFR

2012-07-01

... Analysis § 60.2050 What is a siting analysis? (a) The siting analysis must consider air pollution control... include the consideration of air pollution control alternatives specified in paragraph (a) of this section... Section 60.2050 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR PROGRAMS...

The Prescription Opioid Epidemic: Social Media Responses to the Residents' Perspective Article.

PubMed

Choo, Esther K; Mazer-Amirshahi, Maryann; Juurlink, David; Kobner, Scott; Scott, Kevin; Lin, Michelle

2016-01-01

In June 2014, Annals of Emergency Medicine collaborated with the Academic Life in Emergency Medicine (ALiEM) blog-based Web site to host an online discussion session featuring the Annals Residents' Perspective article "The Opioid Prescription Epidemic and the Role of Emergency Medicine" by Poon and Greenwood-Ericksen. This dialogue included a live videocast with the authors and other experts, a detailed discussion on the ALiEM Web site's comment section, and real-time conversations on Twitter. Engagement was tracked through various Web analytic tools, and themes were identified by content curation. The dialogue resulted in 1,262 unique page views from 433 cities in 41 countries on the ALiEM Web site, 408,498 Twitter impressions, and 168 views of the video interview with the authors. Four major themes about prescription opioids identified included the following: physician knowledge, inconsistent medical education, balance between overprescribing and effective pain management, and approaches to solutions. Free social media technologies provide a unique opportunity to engage with a diverse community of emergency medicine and non-emergency medicine clinicians, nurses, learners, and even patients. Such technologies may allow more rapid hypothesis generation for future research and more accelerated knowledge translation. Copyright © 2015 American College of Emergency Physicians. Published by Elsevier Inc. All rights reserved.

DHSpred: support-vector-machine-based human DNase I hypersensitive sites prediction using the optimal features selected by random forest.

PubMed

Manavalan, Balachandran; Shin, Tae Hwan; Lee, Gwang

2018-01-05

DNase I hypersensitive sites (DHSs) are genomic regions that provide important information regarding the presence of transcriptional regulatory elements and the state of chromatin. Therefore, identifying DHSs in uncharacterized DNA sequences is crucial for understanding their biological functions and mechanisms. Although many experimental methods have been proposed to identify DHSs, they have proven to be expensive for genome-wide application. Therefore, it is necessary to develop computational methods for DHS prediction. In this study, we proposed a support vector machine (SVM)-based method for predicting DHSs, called DHSpred (DNase I Hypersensitive Site predictor in human DNA sequences), which was trained with 174 optimal features. The optimal combination of features was identified from a large set that included nucleotide composition and di- and trinucleotide physicochemical properties, using a random forest algorithm. DHSpred achieved a Matthews correlation coefficient and accuracy of 0.660 and 0.871, respectively, which were 3% higher than those of control SVM predictors trained with non-optimized features, indicating the efficiency of the feature selection method. Furthermore, the performance of DHSpred was superior to that of state-of-the-art predictors. An online prediction server has been developed to assist the scientific community, and is freely available at: http://www.thegleelab.org/DHSpred.html.

DHSpred: support-vector-machine-based human DNase I hypersensitive sites prediction using the optimal features selected by random forest

PubMed Central

Manavalan, Balachandran; Shin, Tae Hwan; Lee, Gwang

2018-01-01

DNase I hypersensitive sites (DHSs) are genomic regions that provide important information regarding the presence of transcriptional regulatory elements and the state of chromatin. Therefore, identifying DHSs in uncharacterized DNA sequences is crucial for understanding their biological functions and mechanisms. Although many experimental methods have been proposed to identify DHSs, they have proven to be expensive for genome-wide application. Therefore, it is necessary to develop computational methods for DHS prediction. In this study, we proposed a support vector machine (SVM)-based method for predicting DHSs, called DHSpred (DNase I Hypersensitive Site predictor in human DNA sequences), which was trained with 174 optimal features. The optimal combination of features was identified from a large set that included nucleotide composition and di- and trinucleotide physicochemical properties, using a random forest algorithm. DHSpred achieved a Matthews correlation coefficient and accuracy of 0.660 and 0.871, respectively, which were 3% higher than those of control SVM predictors trained with non-optimized features, indicating the efficiency of the feature selection method. Furthermore, the performance of DHSpred was superior to that of state-of-the-art predictors. An online prediction server has been developed to assist the scientific community, and is freely available at: http://www.thegleelab.org/DHSpred.html PMID:29416743

Stopover habitats of spring migrating surf scoters in southeast Alaska

USGS Publications Warehouse

Lok, E.K.; Esler, Daniel N.; Takekawa, John Y.; De La Cruz, S.W.; Sean, Boyd W.; Nysewander, D.R.; Evenson, J.R.; Ward, D.H.

2011-01-01

Habitat conditions and nutrient reserve levels during spring migration have been suggested as important factors affecting population declines in waterfowl, emphasizing the need to identify key sites used during spring and understand habitat features and resource availability at stopover sites. We used satellite telemetry to identify stopover sites used by surf scoters migrating through southeast Alaska during spring. We then contrasted habitat features of these sites to those of random sites to determine habitat attributes corresponding to use by migrating scoters. We identified 14 stopover sites based on use by satellite tagged surf scoters from several wintering sites. We identified Lynn Canal as a particularly important stopover site for surf scoters originating throughout the Pacific winter range; approximately half of tagged coastally migrating surf scoters used this site, many for extended periods. Stopover sites were farther from the mainland coast and closer to herring spawn sites than random sites, whereas physical shoreline habitat attributes were generally poor predictors of site use. The geography and resource availability within southeast Alaska provides unique and potentially critical stopover habitat for spring migrating surf scoters. Our work identifies specific sites and habitat resources that deserve conservation and management consideration. Aggregations of birds are vulnerable to human activity impacts such as contaminant spills and resource management decisions. This information is of value to agencies and organizations responsible for emergency response planning, herring fisheries management, and bird and ecosystem conservation.

Recent Developments on the Turbulence Modeling Resource Website (Invited)

NASA Technical Reports Server (NTRS)

Rumssey, Christopher L.

2015-01-01

The NASA Langley Turbulence Model Resource (TMR) website has been active for over five years. Its main goal of providing a one-stop, easily accessible internet site for up-to-date information on Reynolds-averaged Navier-Stokes turbulence models remains unchanged. In particular, the site strives to provide an easy way for users to verify their own implementations of widely-used turbulence models, and to compare the results from different models for a variety of simple unit problems covering a range of flow physics. Some new features have been recently added to the website. This paper documents the site's features, including recent developments, future plans, and open questions.

Bridging the Gap - Networking Educators using Real-Time Seismic Data

NASA Astrophysics Data System (ADS)

Ortiz, A. M.; Renwald, M. D.; Baldwin, T. K.; Hall, M. K.

2004-12-01

After nearly a decade, the seismology community has made critical advances in identifying what is effective and what is needed for success in incorporating real-time seismic data in the classroom. Today's K-16 classroom teachers have many options and opportunities for incorporating short- and long-term inquiry activities for monitoring earthquakes and analyzing seismic data in their daily instruction. Through the SpiNet program, we are providing web-based tools that support educators working with real-time seismic data (http://www.scieds.com/spinet/). Our site includes a Recent Seismicity section, which allows users to share seismic data in real-time, and provides near real-time information about global seismicity. Our Activities section provides data and lessons to assist educators who wish to integrate seismology into their classroom. The Research section, currently under development, will allow educators to share general information about how they teach seismology in their classroom through a discussion board and by posting lesson plans. In addition, we are developing a user-friendly tool for students to post results of their research projects. Designing a website which targets a range of users requires a working knowledge of both user needs and website programming and design. User needs include providing a logical navigational structure and accounting for differences in browser functionality, internet access, and users' abilities. Using website development tools, such as PHP, MySQL, RDF feeds, and specialized geoscience applications, we are automating site maintenance; incorporating databases for information storage and retrieval; and providing accessibility for users with a range of skills and physical limitations. By incorporating these features, we have built a dynamic interface for a broad range of users interested in educational seismology.

40 CFR 230.45 - Riffle and pool complexes.

Code of Federal Regulations, 2013 CFR

2013-07-01

... Section 230.45 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) OCEAN DUMPING SECTION... Impacts on Special Aquatic Sites § 230.45 Riffle and pool complexes. (a) Steep gradient sections of... modification. Note: Possible actions to minimize adverse impacts on site or material characteristics can be...

40 CFR 230.45 - Riffle and pool complexes.

Code of Federal Regulations, 2014 CFR

2014-07-01

... Section 230.45 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) OCEAN DUMPING SECTION... Impacts on Special Aquatic Sites § 230.45 Riffle and pool complexes. (a) Steep gradient sections of... modification. Note: Possible actions to minimize adverse impacts on site or material characteristics can be...

40 CFR 230.45 - Riffle and pool complexes.

Code of Federal Regulations, 2012 CFR

2012-07-01

... Section 230.45 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) OCEAN DUMPING SECTION... Impacts on Special Aquatic Sites § 230.45 Riffle and pool complexes. (a) Steep gradient sections of... modification. Note: Possible actions to minimize adverse impacts on site or material characteristics can be...

Nevada National Security Site Environmental Report 2011 Attachment A: Site Description

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cathy Wills, ed.

2012-09-12

This attachment expands on the general description of the Nevada National Security Site (NNSS) presented in the Introduction to the Nevada National Security Site Environmental Report 2011. Included are subsections that summarize the site's geological, hydrological, climatological, and ecological setting and the cultural resources of the NNSS. The subsections are meant to aid the reader in understanding the complex physical and biological environment of the NNSS. An adequate knowledge of the site's environment is necessary to assess the environmental impacts of new projects, design and implement environmental monitoring activities for current site operations, and assess the impacts of site operationsmore » on the public residing in the vicinity of the NNSS. The NNSS environment contributes to several key features of the site that afford protection to the inhabitants of adjacent areas from potential exposure to radioactivity or other contaminants resulting from NNSS operations. These key features include the general remote location of the NNSS, restricted access, extended wind transport times, the great depths to slow-moving groundwater, little or no surface water, and low population density. This attachment complements the annual summary of monitoring program activities and dose assessments presented in the main body of this report.« less

Impact geologists, beware!

NASA Astrophysics Data System (ADS)

Melosh, H. J.

2017-09-01

Impact geologists have long assumed that shock metamorphic features, such as planar fractures and Planar Deformation Features (PDFs) in quartz are reliable indicators of an extraterrestrial impact. A new paper by Chen et al. (2017) now shows that such features might arise in terrestrial lightning strikes, thus raising the bar for identification of impact sites.

Insights into multimodal imaging classification of ADHD

PubMed Central

Colby, John B.; Rudie, Jeffrey D.; Brown, Jesse A.; Douglas, Pamela K.; Cohen, Mark S.; Shehzad, Zarrar

2012-01-01

Attention deficit hyperactivity disorder (ADHD) currently is diagnosed in children by clinicians via subjective ADHD-specific behavioral instruments and by reports from the parents and teachers. Considering its high prevalence and large economic and societal costs, a quantitative tool that aids in diagnosis by characterizing underlying neurobiology would be extremely valuable. This provided motivation for the ADHD-200 machine learning (ML) competition, a multisite collaborative effort to investigate imaging classifiers for ADHD. Here we present our ML approach, which used structural and functional magnetic resonance imaging data, combined with demographic information, to predict diagnostic status of individuals with ADHD from typically developing (TD) children across eight different research sites. Structural features included quantitative metrics from 113 cortical and non-cortical regions. Functional features included Pearson correlation functional connectivity matrices, nodal and global graph theoretical measures, nodal power spectra, voxelwise global connectivity, and voxelwise regional homogeneity. We performed feature ranking for each site and modality using the multiple support vector machine recursive feature elimination (SVM-RFE) algorithm, and feature subset selection by optimizing the expected generalization performance of a radial basis function kernel SVM (RBF-SVM) trained across a range of the top features. Site-specific RBF-SVMs using these optimal feature sets from each imaging modality were used to predict the class labels of an independent hold-out test set. A voting approach was used to combine these multiple predictions and assign final class labels. With this methodology we were able to predict diagnosis of ADHD with 55% accuracy (versus a 39% chance level in this sample), 33% sensitivity, and 80% specificity. This approach also allowed us to evaluate predictive structural and functional features giving insight into abnormal brain circuitry in ADHD. PMID:22912605

Seafloor massive sulfide deposits support unique megafaunal assemblages: Implications for seabed mining and conservation.

PubMed

Boschen, Rachel E; Rowden, Ashley A; Clark, Malcolm R; Pallentin, Arne; Gardner, Jonathan P A

2016-04-01

Mining of seafloor massive sulfides (SMS) is imminent, but the ecology of assemblages at SMS deposits is poorly known. Proposed conservation strategies include protected areas to preserve biodiversity at risk from mining impacts. Determining site suitability requires biological characterisation of the mine site and protected area(s). Video survey of a proposed mine site and protected area off New Zealand revealed unique megafaunal assemblages at the mine site. Significant relationships were identified between assemblage structure and environmental conditions, including hydrothermal features. Unique assemblages occurred at both active and inactive chimneys and are particularly at risk from mining-related impacts. The occurrence of unique assemblages at the mine site suggests that the proposed protected area is insufficient alone and should instead form part of a network. These results provide support for including hydrothermally active and inactive features within networks of protected areas and emphasise the need for quantitative survey data of proposed sites. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Mission to Malapert

NASA Astrophysics Data System (ADS)

Otten, N. D.; Amoroso, E.; Jones, H. L.; Kitchell, F.; Wettergreen, D. S.; Whittaker, W. L.

2016-11-01

This work presents methodology for evaluating lunar landing site amenability and identifies promising sites for landing on Malapert Mountain, which features shallow slopes, uninterrupted Earth visibility, and ten-plus days of uninterrupted sunlight.

Does an Interactive WebCT Site Help Students Learn?

ERIC Educational Resources Information Center

Elicker, Joelle D.; O'Malley, Alison L.; Williams, Christine M.

2008-01-01

We examined whether students with access to a supplemental course Web site enhanced with e-mail, discussion boards, and chat room capability reacted to it more positively than students who used a Web site with the same content but no communication features. Students used the Web sites on a voluntary basis. At the end of the semester, students…

10 CFR 503.11 - Alternative sites-general requirement for permanent exemptions for new powerplants.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 10 Energy 4 2010-01-01 2010-01-01 false Alternative sites-general requirement for permanent exemptions for new powerplants. 503.11 Section 503.11 Energy DEPARTMENT OF ENERGY (CONTINUED) ALTERNATE FUELS... alternate fuel supply, site limitations, environmental requirements, or inadequate capital, section 212(a...

Mesoscale barrier estuary behaviour in response to sea-level rise, storms and sediment supply.

NASA Astrophysics Data System (ADS)

Hamilton, Christine; Kirby, Jason; Plater, Andrew; Lane, Timothy

2017-04-01

Future vulnerability and resilience of coastal landscapes, and their associated communities, infrastructure and nature conservation interests, is of increasing concern due to the combined effects of climate change and sea-level rise. The Suffolk coast, UK, characterised by gravel barrier beaches and a spit feature of international geomorphological interest, has changed dramatically. However, existing Holocene research in this respect is limited. Sediments preserved within the enclosed valleys and back-barrier wetlands of Suffolk provide an opportunity to improve understanding of the complex mesoscale (years-decades-centuries) behaviour of coastlines and their geomorphological response to changes in natural forcing. This research aims to reconstruct Holocene changes in coastline behaviour to develop reconstructions of coastal evolution relating to changes in relative sea level, sediment supply and storm incidence. Litho- and bio-stratigraphic analysis (sedimentology, particle size, and diatom analysis) has been undertaken on three marsh and wetland sites in a 5 km section between Walberswick and Dunwich. Though intra-site sediment variability is high, a consistent pattern of interbedded intertidal and freshwater units separated by transitional marsh deposits is seen at all sites. Diatom analysis from two sites (Westwood Marsh and Oldtown Marsh) indicates increased marine and brackish conditions across the organic-minerogenic transitions. The diatom assemblage from Great Dingle Hill, a more seaward site, is dominated by brackish species, with an increase in marine conditions across the main organic-minerogenic stratigraphic transition. Freshwater and salt tolerant species are minimal in this assemblage, indicating a constant saltwater input. The onset of peat deposition has been dated to 6950-6790 cal. BP at the base of the Westwood Marsh sequence. These results contrast with existing research from the Blyth estuary (5 km north) where peat deposition was dated to 7714-7479 cal. BP. Submitted radiocarbon analysis will provide further chronological constraint for the timing of the major coastal behavioural changes identified from the analysis. Combined, these results indicate that this section of the Suffolk coast has been subject to periodic opening and closing during the Holocene. Though currently unresolved, longshore sediment supply, high magnitude-low frequency storm events, sea-level change, and the position of offshore banks are likely causal mechanisms for these changes. These results will improve understanding of the long term (Holocene) natural signal of coastal change and are significant given that the regional Shoreline Management Plan has recommended managed realignment for this section of the Suffolk coast.

A Comparison of Vertical and Transverse Sections in the Histological Diagnosis of Alopecia Areata Scalp Biopsy Specimens

PubMed Central

Singh, Kanika; Sharma, Sonal; Singh, Usha Rani; Bhattacharya, Sambit Nath

2016-01-01

Context: Both vertical and transverse sections are used for the diagnosis of alopecia areata. However when a single biopsy is submitted the pathologist has to decide which type is better. Aims: To compare the diagnostic histological features in vertical and transverse sections in alopecia areata scalp biopsy specimens. Settings and Design: Tertiary Care Hospital. Comparative Study. Materials and Methods: A total of 30 patients were enrolled in the study. Two four mm punch biopsy were taken. One was used to take vertical sections and the other for transverse section and histological features of alopecia areata noted in both. Statistical Analysis Used: Chi-square test, percentage. Results: Diagnosis of alopecia areata could be made in 30 (100%) cases in transverse sections and 28 cases (93.3%) in vertical sections. The number of hair follicles available for evaluation was more in the transverse section. Nanogen follicles and miniaturization of follicles were better visualized in the transverse sections. However the catagen and telogen follicles were noted in both vertical and transverse sections but the number and the ratio of anagen and telogen hair follicles could be better assessed in the transverse sections. Presence of peribulbar lymphocytic infiltrate, eosinophils and pigment casts were noted in both transverse and vertical sections. Conclusions: Transverse sections provide a better assessment of the histological features of alopecia areata than vertical sections and thus should be preferred. PMID:27625562

A Comparison of Vertical and Transverse Sections in the Histological Diagnosis of Alopecia Areata Scalp Biopsy Specimens.

PubMed

Singh, Kanika; Sharma, Sonal; Singh, Usha Rani; Bhattacharya, Sambit Nath

2016-01-01

Both vertical and transverse sections are used for the diagnosis of alopecia areata. However when a single biopsy is submitted the pathologist has to decide which type is better. To compare the diagnostic histological features in vertical and transverse sections in alopecia areata scalp biopsy specimens. Tertiary Care Hospital. Comparative Study. A total of 30 patients were enrolled in the study. Two four mm punch biopsy were taken. One was used to take vertical sections and the other for transverse section and histological features of alopecia areata noted in both. Chi-square test, percentage. Diagnosis of alopecia areata could be made in 30 (100%) cases in transverse sections and 28 cases (93.3%) in vertical sections. The number of hair follicles available for evaluation was more in the transverse section. Nanogen follicles and miniaturization of follicles were better visualized in the transverse sections. However the catagen and telogen follicles were noted in both vertical and transverse sections but the number and the ratio of anagen and telogen hair follicles could be better assessed in the transverse sections. Presence of peribulbar lymphocytic infiltrate, eosinophils and pigment casts were noted in both transverse and vertical sections. Transverse sections provide a better assessment of the histological features of alopecia areata than vertical sections and thus should be preferred.

Risk-based corrective action: Lessons for brownfields from the Illinois rulemaking

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reott, R.T.; Grayson, E.L.

As attention focuses on the redevelopment of brownfield properties, increasing numbers of stakeholders realize that one of the major stumbling blocks to the use of brownfields properties is the uncertainty over future cleanup costs. In Illinois, the Pollution Control Board recently completed a three-year rulemaking which has provided a new, risk-based system for determining corrective action objectives. 35 Ill. Adm. Code {section} 742 (1997). Armed with this system, Illinois property owners and developers may assess potential cleanup exposure with less site investigation than in the past. Because the system may be implemented quickly and predictably, it functions well in amore » transactional context where speed is critical. This presentation highlights the features of the new Illinois system and identifies potential issues that other states might wish to consider when they evaluate their own programs. Many states are in the process of implementing risk-based corrective action for some or all of their site remediation programs. The lessons learned in Illinois may help these states implement these programs more efficiently and with fewer developmental costs.« less

AAVSO Target Tool: A Web-Based Service for Tracking Variable Star Observations (Abstract)

NASA Astrophysics Data System (ADS)

Burger, D.; Stassun, K. G.; Barnes, C.; Kafka, S.; Beck, S.; Li, K.

2018-06-01

(Abstract only) The AAVSO Target Tool is a web-based interface for bringing stars in need of observation to the attention of AAVSOís network of amateur and professional astronomers. The site currently tracks over 700 targets of interest, collecting data from them on a regular basis from AAVSOís servers and sorting them based on priority. While the target tool does not require a login, users can obtain visibility times for each target by signing up and entering a telescope location. Other key features of the site include filtering by AAVSO observing section, sorting by different variable types, formatting the data for printing, and exporting the data to a CSV file. The AAVSO Target Tool builds upon seven years of experience developing web applications for astronomical data analysis, most notably on Filtergraph (Burger, D., et al. 2013, Astronomical Data Analysis Software and Systems XXII, Astronomical Society of the Pacific, San Francisco, 399), and is built using the web2py web framework based on the python programming language. The target tool is available at http://filtergraph.com/aavso.

Characterization of Geologic Structures and Host Rock Properties Relevant to the Hydrogeology of the Standard Mine in Elk Basin, Gunnison County, Colorado

USGS Publications Warehouse

Caine, Jonathan S.; Manning, Andrew H.; Berger, Byron R.; Kremer, Yannick; Guzman, Mario A.; Eberl, Dennis D.; Schuller, Kathryn

2010-01-01

The Standard Mine Superfund Site is a source of mine drainage and associated heavy metal contamination of surface and groundwaters. The site contains Tertiary polymetallic quartz veins and fault zones that host precious and base metal sulfide mineralization common in Colorado. To assist the U.S. Environmental Protection Agency in its effort to remediate mine-related contamination, we characterized geologic structures, host rocks, and their potential hydraulic properties to better understand the sources of contaminants and the local hydrogeology. Real time kinematic and handheld global positioning systems were used to locate and map precisely the geometry of the surface traces of structures and mine-related features, such as portals. New reconnaissance geologic mapping, field and x-ray diffraction mineralogy, rock sample collection, thin-section analysis, and elemental geochemical analysis were completed to characterize hydrothermal alteration, mineralization, and subsequent leaching of metallic phases. Surface and subsurface observations, fault vein and fracture network characterization, borehole geophysical logging, and mercury injection capillary entry pressure data were used to document potential controls on the hydrologic system.

CACD Journal, 1994-95.

ERIC Educational Resources Information Center

Wickwire, Pat Nellor, Ed.

1995-01-01

This issue of the CACD Journal includes theoretical proposals and practical reports of initiatives for innovation and change in the counseling profession. A theme feature section, "Reframing School Guidance and Counseling," examines changes in the state, district, and school. An additional feature section, "The Personal Side of Counseling,"…

Preliminary analysis of Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) for mineralogic mapping at sites in Nevada and Colorado

NASA Technical Reports Server (NTRS)

Kruse, Fred A.; Taranik, Dan L.; Kierein-Young, Kathryn S.

1988-01-01

Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data for sites in Nevada and Colorado were evaluated to determine their utility for mineralogical mapping in support of geologic investigations. Equal energy normalization is commonly used with imaging spectrometer data to reduce albedo effects. Spectra, profiles, and stacked, color-coded spectra were extracted from the AVIRIS data using an interactive analysis program (QLook) and these derivative data were compared to Airborne Imaging Spectrometer (AIS) results, field and laboratory spectra, and geologic maps. A feature extraction algorithm was used to extract and characterize absorption features from AVIRIS and laboratory spectra, allowing direct comparison of the position and shape of absorption features. Both muscovite and carbonate spectra were identified in the Nevada AVIRIS data by comparison with laboratory and AIS spectra, and an image was made that showed the distribution of these minerals for the entire site. Additional, distinctive spectra were located for an unknown mineral. For the two Colorado sites, the signal-to-noise problem was significantly worse and attempts to extract meaningful spectra were unsuccessful. Problems with the Colorado AVIRIS data were accentuated by the IAR reflectance technique because of moderate vegetation cover. Improved signal-to-noise and alternative calibration procedures will be required to produce satisfactory reflectance spectra from these data. Although the AVIRIS data were useful for mapping strong mineral absorption features and producing mineral maps at the Nevada site, it is clear that significant improvements to the instrument performance are required before AVIRIS will be an operational instrument.

Creating Virtual Fieldwork Experiences of Geoheritage Sites as Educator Professional Development (Invited)

NASA Astrophysics Data System (ADS)

Duggan-Haas, D.

2013-12-01

Geoheritage sites are identified as such because they include excellent examples of geologic features or processes, or they have played an important role in the development of geologic understandings. These characteristics also make them excellent sites for teaching in the field, for teaching educators about the nature of fieldwork, and for making Virtual Fieldwork Experiences (VFEs, multimedia representations of field sites). Through the NSF-funded Regional and Local Earth (ReaL) Earth Inquiry Project, we have engaged educators in these practices. The nature of geoheritage sites is anomalous -- if this were not the case, the sites would not gain recognition. Anomalous features or processes can be powerful learning tools when placed into comparison with the more mundane, and the Earth system science of sites local to schools is likely to be mundane. By comparing the mundane and the extraordinary, it is hoped we can learn more about both. The professional development (PD) in ReaL Earth Inquiry begins with a face-to-face workshop within the teachers' region at a site that is interesting from an Earth system science perspective. Though we recognize and emphasize that all sites are interesting from an ESS perspective if you know how to look, the sites typically have features worthy of geoheritage designation. PD does not end with the end of the workshop but continues with online study groups where teachers work together to complete the workshop site VFE, and transition to work on VFEs of sites local to their schools. Throughout the program, participants engage in: - mentored fieldwork that pays attention to the skills and knowledge needed to lead fieldwork; - instruction in and use of a wide range of technologies for making VFEs; - study of a coherent conceptual framework connected to the project's driving question: Why does this place look the way it does? - and, use of resources for supporting all of the above The resources include templates for making VFEs and a framework summarized in the attached graphic organizer that features a series of questions that can be productively asked of any field site. By working with educators, we not only produce curriculum resources in the form of VFEs, we also engage in educator PD that produces evidence of its effectiveness, at least in terms of indications that educators are engaged in field study both at the workshop site and after they return home. Production of local VFEs sometimes involves students. The VFE Graphic Organizer, showing a series of questions that may be asked about any site, all under the project's driving question: Why does this place look the way it does?

Biological and functional relevance of CASP predictions

PubMed Central

Liu, Tianyun; Ish‐Shalom, Shirbi; Torng, Wen; Lafita, Aleix; Bock, Christian; Mort, Matthew; Cooper, David N; Bliven, Spencer; Capitani, Guido; Mooney, Sean D.

2017-01-01

Abstract Our goal is to answer the question: compared with experimental structures, how useful are predicted models for functional annotation? We assessed the functional utility of predicted models by comparing the performances of a suite of methods for functional characterization on the predictions and the experimental structures. We identified 28 sites in 25 protein targets to perform functional assessment. These 28 sites included nine sites with known ligand binding (holo‐sites), nine sites that are expected or suggested by experimental authors for small molecule binding (apo‐sites), and Ten sites containing important motifs, loops, or key residues with important disease‐associated mutations. We evaluated the utility of the predictions by comparing their microenvironments to the experimental structures. Overall structural quality correlates with functional utility. However, the best‐ranked predictions (global) may not have the best functional quality (local). Our assessment provides an ability to discriminate between predictions with high structural quality. When assessing ligand‐binding sites, most prediction methods have higher performance on apo‐sites than holo‐sites. Some servers show consistently high performance for certain types of functional sites. Finally, many functional sites are associated with protein‐protein interaction. We also analyzed biologically relevant features from the protein assemblies of two targets where the active site spanned the protein‐protein interface. For the assembly targets, we find that the features in the models are mainly determined by the choice of template. PMID:28975675

24 CFR 891.320 - Site and neighborhood standards.

Code of Federal Regulations, 2010 CFR

2010-04-01

... 24 Housing and Urban Development 4 2010-04-01 2010-04-01 false Site and neighborhood standards. 891.320 Section 891.320 Housing and Urban Development Regulations Relating to Housing and Urban... OF HOUSING AND URBAN DEVELOPMENT (SECTION 8 HOUSING ASSISTANCE PROGRAMS, SECTION 202 DIRECT LOAN...

Feature Extraction for Track Section Status Classification Based on UGW Signals

PubMed Central

Yang, Yuan; Shi, Lin

2018-01-01

Track status classification is essential for the stability and safety of railway operations nowadays, when railway networks are becoming more and more complex and broad. In this situation, monitoring systems are already a key element in applications dedicated to evaluating the status of a certain track section, often determining whether it is free or occupied by a train. Different technologies have already been involved in the design of monitoring systems, including ultrasonic guided waves (UGW). This work proposes the use of the UGW signals captured by a track monitoring system to extract the features that are relevant for determining the corresponding track section status. For that purpose, three features of UGW signals have been considered: the root mean square value, the energy, and the main frequency components. Experimental results successfully validated how these features can be used to classify the track section status into free, occupied and broken. Furthermore, spatial and temporal dependencies among these features were analysed in order to show how they can improve the final classification performance. Finally, a preliminary high-level classification system based on deep learning networks has been envisaged for future works. PMID:29673156

Using Publishers' Web Sites for Reference Collection Development.

ERIC Educational Resources Information Center

Holmberg, Melissa

2000-01-01

Analyzes the ways publishers' Web sites can be used by librarians to locate additional science and technology reference materials which fall within budget constraints while meeting the needs of the patrons. Reviews specific publishers' Web sites to compare features and show how they differ. (Author/LRW)

Landscape features influence postrelease predation on endangered black-footed ferrets

USGS Publications Warehouse

Poessel, S.A.; Breck, S.W.; Biggins, D.E.; Livieri, T.M.; Crooks, K.R.; Angeloni, L.

2011-01-01

Predation can be a critical factor influencing recovery of endangered species. In most recovery efforts lethal and nonlethal influences of predators are not sufficiently understood to allow prediction of predation risk, despite its importance. We investigated whether landscape features could be used to model predation risk from coyotes (Canis latrans) and great horned owls (Bubo virginianus) on the endangered black-footed ferret (Mustela nigripes). We used location data of reintroduced ferrets from 3 sites in South Dakota to determine whether exposure to landscape features typically associated with predators affected survival of ferrets, and whether ferrets considered predation risk when choosing habitat near perches potentially used by owls or near linear features predicted to be used by coyotes. Exposure to areas near likely owl perches reduced ferret survival, but landscape features potentially associated with coyote movements had no appreciable effect on survival. Ferrets were located within 90 m of perches more than expected in 2 study sites that also had higher ferret mortality due to owl predation. Densities of potential coyote travel routes near ferret locations were no different than expected in all 3 sites. Repatriated ferrets might have selected resources based on factors other than predator avoidance. Considering an easily quantified landscape feature (i.e., owl perches) can enhance success of reintroduction efforts for ferrets. Nonetheless, development of predictive models of predation risk and management strategies to mitigate that risk is not necessarily straightforward for more generalist predators such as coyotes. ?? 2011 American Society of Mammalogists.

Changes in blast zone albedo patterns around new martian impact craters

NASA Astrophysics Data System (ADS)

Daubar, I. J.; Dundas, C. M.; Byrne, S.; Geissler, P.; Bart, G. D.; McEwen, A. S.; Russell, P. S.; Chojnacki, M.; Golombek, M. P.

2016-03-01

"Blast zones" (BZs) around new martian craters comprise various albedo features caused by the initial impact, including diffuse halos, extended linear and arcuate rays, secondary craters, ejecta patterns, and dust avalanches. We examined these features for changes in repeat images separated by up to four Mars years. Here we present the first comprehensive survey of the qualitative and quantitative changes observed in impact blast zones over time. Such changes are most likely due to airfall of high-albedo dust restoring darkened areas to their original albedo, the albedo of adjacent non-impacted surfaces. Although some sites show drastic changes over short timescales, nearly half of the sites show no obvious changes over several Mars years. Albedo changes are more likely to occur at higher-latitude sites, lower-elevation sites, and at sites with smaller central craters. No correlation was seen between amount of change and Dust Cover Index, relative halo size, or historical regional albedo changes. Quantitative albedo measurements of the diffuse dark halos relative to their surroundings yielded estimates of fading lifetimes for these features. The average lifetime among sites with measurable fading is ∼15 Mars years; the median is ∼8 Mars years for a linear brightening. However, at approximately half of sites with three or more repeat images, a nonlinear function with rapid initial fading followed by a slow increase in albedo provides a better fit to the fading behavior; this would predict even longer lifetimes. The predicted lifetimes of BZs are comparable to those of slope streaks, and considered representative of fading by global atmospheric dust deposition; they last significantly longer than dust devil or rover tracks, albedo features that are erased by different processes. These relatively long lifetimes indicate that the measurement of the current impact rate by Daubar et al. (Daubar, I.J. et al. [2013]. Icarus 225, 506-516. http://dx.doi.org/10.1016/j.icarus.2013.04.009) does not suffer significantly from overall under-sampling due to blast zones fading before new impact sites can be initially discovered. However, the prevalence of changes seen around smaller craters may explain in part their shallower size frequency distribution.

Changes in blast zone albedo patterns around new martian impact craters

USGS Publications Warehouse

Daubar, Ingrid J.; Dundas, Colin; Byrne, Shane; Geissler, Paul; Bart, Gwen; McEwen, Alfred S.; Russell, Patrick; Chojnacki, Matthew; Golombek, M.P.

2016-01-01

“Blast zones” (BZs) around new martian craters comprise various albedo features caused by the initial impact, including diffuse halos, extended linear and arcuate rays, secondary craters, ejecta patterns, and dust avalanches. We examined these features for changes in repeat images separated by up to four Mars years. Here we present the first comprehensive survey of the qualitative and quantitative changes observed in impact blast zones over time. Such changes are most likely due to airfall of high-albedo dust restoring darkened areas to their original albedo, the albedo of adjacent non-impacted surfaces. Although some sites show drastic changes over short timescales, nearly half of the sites show no obvious changes over several Mars years. Albedo changes are more likely to occur at higher-latitude sites, lower-elevation sites, and at sites with smaller central craters. No correlation was seen between amount of change and Dust Cover Index, relative halo size, or historical regional albedo changes. Quantitative albedo measurements of the diffuse dark halos relative to their surroundings yielded estimates of fading lifetimes for these features. The average lifetime among sites with measurable fading is ∼15 Mars years; the median is ∼8 Mars years for a linear brightening. However, at approximately half of sites with three or more repeat images, a nonlinear function with rapid initial fading followed by a slow increase in albedo provides a better fit to the fading behavior; this would predict even longer lifetimes. The predicted lifetimes of BZs are comparable to those of slope streaks, and considered representative of fading by global atmospheric dust deposition; they last significantly longer than dust devil or rover tracks, albedo features that are erased by different processes. These relatively long lifetimes indicate that the measurement of the current impact rate by Daubar et al. (Daubar, I.J. et al. [2013]. Icarus 225, 506–516. http://dx.doi.org/10.1016/j.icarus.2013.04.009) does not suffer significantly from overall under-sampling due to blast zones fading before new impact sites can be initially discovered. However, the prevalence of changes seen around smaller craters may explain in part their shallower size frequency distribution.

General geology and geomorphology of the Mars Pathfinder landing site

USGS Publications Warehouse

Ward, A.W.; Gaddis, L.R.; Kirk, R.L.; Soderblom, L.A.; Tanaka, K.L.; Golombek, M.P.; Parker, T.J.; Greeley, Ronald; Kuzmin, R.O.

1999-01-01

The Mars Pathfinder (MPF) spacecraft landed on relatively young (late Hesperian-early Amazonian; 3.1-0.7 Ga) plains in Chryse Planitia near the mouth of Ares Vallis. Images returned from the spacecraft reveal a complex landscape of ridges and troughs, large hills and crater rims, rocks and boulders of various sizes and shapes, and surficial deposits, indicating a complex, multistage geologic history of the landing site. After the deposition of one or more bedrock units, depositional and erosional fluvial processes shaped much of the present landscape. Multiple erosional events are inferred on the basis of observations of numerous channels, different orientations of many streamlined tails from their associated knobs and hills, and superposition of lineations and streamlines. Medium- and small-scale features, interpreted to be related to late-stage drainage of floodwaters, are recognized in several areas at the landing site. Streamlined knobs and hills seen in Viking orbiter images support this inference, as they seem to be complex forms, partly erosional and partly depositional, and may also indicate a series of scouring and depositional events that, in some cases, further eroded or partially buried these landforms. Although features such as these are cited as evidence for catastrophic flooding at Ares Vallis, some of these features may also be ascribed to alternative primary or secondary depositional processes, such as glacial or mass-wasting processes. Close inspection of the landing site reveals rocks that are interpreted to be volcanic in origin and others that may be conglomeratic. If such sedimentary rocks are confirmed, fluvial processes have had a greater significance on Mars than previously thought. For the last several hundred million to few billion years, eolian processes have been dominant. Dunes and dune-like features, ventifacts, and deflation and exhumation features around several rocks probably are the most recent landforms. The relatively pristine nature of the overall landscape at the MPF site suggests weathering and erosion processes on Mars are exceptionally slow.

Emphasizing Social Features in Information Portals: Effects on New Member Engagement

PubMed Central

Sharma, Nikhil; Butler, Brian S.; Irwin, Jeannie; Spallek, Heiko

2013-01-01

Many information portals are adding social features with hopes of enhancing the overall user experience. Invitations to join and welcome pages that highlight these social features are expected to encourage use and participation. While this approach is widespread and seems plausible, the effect of providing and highlighting social features remains to be tested. We studied the effects of emphasizing social features on users' response to invitations, their decisions to join, their willingness to provide profile information, and their engagement with the portal's social features. The results of a quasi-experiment found no significant effect of social emphasis in invitations on receivers' responsiveness. However, users receiving invitations highlighting social benefits were less likely to join the portal and provide profile information. Social emphasis in the initial welcome page for the site also was found to have a significant effect on whether individuals joined the portal, how much profile information they provided and shared, and how much they engaged with social features on the site. Unexpectedly, users who were welcomed in a social manner were less likely to join and provided less profile information; they also were less likely to engage with social features of the portal. This suggests that even in online contexts where social activity is an increasingly common feature, highlighting the presence of social features may not always be the optimal presentation strategy. PMID:23626487

The Library Web: Case Studies in Web Site Creation and Implementation.

ERIC Educational Resources Information Center

Still, Julie M., Ed.

This book presents 19 case studies in library web site creation and implementation. The book begins with an introduction--"Introduction: Step into My Parlor" (Julie M. Still)--and is divided into three sections. The first section, Academic Library Web Sites, contains six case studies: "U-SEARCH: The University of Saskatchewan…

40 CFR 1400.5 - Internet access to certain off-site consequence analysis data elements.

Code of Federal Regulations, 2012 CFR

2012-07-01

... UNDER THE CLEAN AIR ACT SECTION 112(r)(7); DISTRIBUTION OF OFF-SITE CONSEQUENCE ANALYSIS INFORMATION DISTRIBUTION OF OFF-SITE CONSEQUENCE ANALYSIS INFORMATION Public Access § 1400.5 Internet access to certain off... consequence analysis data elements. 1400.5 Section 1400.5 Protection of Environment ENVIRONMENTAL PROTECTION...

40 CFR 1400.5 - Internet access to certain off-site consequence analysis data elements.

Code of Federal Regulations, 2014 CFR

2014-07-01

... UNDER THE CLEAN AIR ACT SECTION 112(r)(7); DISTRIBUTION OF OFF-SITE CONSEQUENCE ANALYSIS INFORMATION DISTRIBUTION OF OFF-SITE CONSEQUENCE ANALYSIS INFORMATION Public Access § 1400.5 Internet access to certain off... consequence analysis data elements. 1400.5 Section 1400.5 Protection of Environment ENVIRONMENTAL PROTECTION...

40 CFR 1400.5 - Internet access to certain off-site consequence analysis data elements.

Code of Federal Regulations, 2013 CFR

2013-07-01

... UNDER THE CLEAN AIR ACT SECTION 112(r)(7); DISTRIBUTION OF OFF-SITE CONSEQUENCE ANALYSIS INFORMATION DISTRIBUTION OF OFF-SITE CONSEQUENCE ANALYSIS INFORMATION Public Access § 1400.5 Internet access to certain off... consequence analysis data elements. 1400.5 Section 1400.5 Protection of Environment ENVIRONMENTAL PROTECTION...

Core logs from five holes near Kramer, in the Mojave Desert, California

USGS Publications Warehouse

Benda, William K.; Erd, Richard C.; Smith, Ward C.

1958-01-01

In 1957, five test holes were drilled near Kramer, California, in =he western Mojave Desert. The drill sites are in topographic basins where gravimetric and geologic surveys indicated the presence, beneath alluvium, of a thick section of Quaternary and Tertiary sedimentary and volcanic rocks. Two holes which were deeper tests at sites drilled in 1954 cored only silts, sands and gravels: Four Corners test hole No. 1 was drilled in sec. 20, T. I0 N., R. 6 W., to a depth of 3,500 feet. Four Corners No. 2, in sec. 5, T. I0 N., R. 8 W., was drilled to 2,328 feet. Three holes which were drilled at new sites north of the intersection of U. S. Highways 395 and 466, locally known as Four Corners, encountered colemanite-bearing sediments. The locations and total depths of these holes are as follows: Four Corners No. 3, sec. T. 11 N., R. 6 W., depth 2,568 feet; Four Corners No. 4, near northern edge of sec. 30, T. ll N., R. 6 W., depth 3,500 feet; Four Corners No. 5, near southern edge of sec. 30, depth 1,604 feet. The sections of rocks encountered in these three holes are similar. In each, the colemanite is in fine-grained sediments that lie below sands and gravels, which are about 600 to 800 feet thick, and are underlain by sandstones and conglomerates. Colemanite is most abundant in the cores from Four Corners to hole No. 5, particularly in the 76 feet of core recovered between depths of 1,051 and 1,131 feet. Chemical analysis shows that in this section of core the average content of B203 is above 14 percent. In addition to colemanite, the cores contain sulfides of arsenic, an unusual iron sulfide, and zeolites. This mineralogy of the colemanite-bearing sediments north of Four Corners, together with the general lake bed lithology and the occurrence as a tilted section of beds below sands and gravels, supports correlation with the upper or marginal parts of the borate-bearin8 sediments at the Kramer borate mining district, which have similar features. There is, however, no evidence that any beds are exactly equivalent in age.

Evaluation of the Relevance of a Web-Based "Ask an Expert" Feature: StratSoy and Soy and Human Health Queries.

ERIC Educational Resources Information Center

Wool, D. L.; Kanfer, A. G.; Michaels, J.; Thompson, S.; Morris, S. A.; Hasler, C. M.

2000-01-01

A study of the "Ask an Expert" feature of StratSoy, a Web-based information system, surveyed 50 users and 48 using it for the first time. Topic areas of interest and web site features desired by respondents were identified. (JOW)

Food and Beverage Brands that Market to Children and Adolescents on the Internet: A Content Analysis of Branded Web Sites

ERIC Educational Resources Information Center

Henry, Anna E.; Story, Mary

2009-01-01

Objective: To identify food and beverage brand Web sites featuring designated children's areas, assess marketing techniques present on those industry Web sites, and determine nutritional quality of branded food items marketed to children. Design: Systematic content analysis of food and beverage brand Web sites and nutrient analysis of food and…

Environmental Assessment, Change in C-17 Flight Training Operations at Grant County International Airport, Washington by Joint Base Lewis-McChord

DTIC Science & Technology

2011-10-01

ground (subsurface) deposits. Examples of prehistoric archaeological resources include village sites, campsites, lithic scatters, burials, hearths ...or hearth features), processing sites, caves and rock shelters, and petroglyph and pictograph sites. Examples of historic archaeological resources

Explore Arctic Health.

PubMed

Lebow, Mahria

2014-04-01

The Arctic Health web site is a portal to Arctic-specific, health related content. The site provides expertly organized and annotated resources pertinent to northern peoples and places, including health information, research publications and environmental information. This site also features the Arctic Health Publications Database, which indexes an array of Arctic-related resources.

Loess and loess-like sediments from the foothills of the Banat Mountains, Romania - Examples from loess sections and Paleolithic sites

NASA Astrophysics Data System (ADS)

Lehmkuhl, F.; Kels, H.; Hambach, U.; Protze, J.; Eckmeier, E.; Hilgers, A.; Klasen, N.

2013-12-01

New investigations from loess and loess-like sediments in the Western Plain of Romania provide evidences for a deeper insight and connection between long loess sections of the lowlands (Semlac) and short sections from the Carpathian foothills (Romanesti and Cosava). While the long loess sections provide evidence concerning climatic and environmental change since the middle Pleistocene the short sequences from the foothills include Paleolithic sites give information especially for the interstadial of the last glacial cycle when the first modern humans arrived in Europe. The section at Semlac is regarded as a key section for Western Romania, which offers possibilities to a) improve the understanding of the type and composition of the lowland loess sequences, b) to reconstruct the local loess-palaeosol succession and c) to connect the loesses of the region for the first time to loess-sequences in adjacent areas. The Paleolithic sites Romanesti and Cosava are situated at the foothills of the Banat Mountains in Romania and provide an important testament of life of the first European modern humans (Homo sapiens sapiens) during Middle Pleniglacial. Even though these sites have been extensively excavated, little is known about the site formation of related loess-like sediments and soils. First luminescence data for the region of all these investigated sections confirm sediments from the penultimate glacial period up to the Holocene. For Semlac, a first relative dating is given by rock magnetic methods in comparison to Serbian loess sections.

Neotectonic and seismic activity in the Armorican and Cornubian Massifs: Regional stress field with glacio-isostatic influence?

NASA Astrophysics Data System (ADS)

Van Vliet-Lanoë, B.; Bonnet, S.; Hallegouët, B.; Laurent, M.

1997-09-01

In Brittany and SW England, evidence for low magnitude Quaternary seismicity can be found in sand pit exposures and beach sections. Deformation is especially well seen in alluvial and estuarine complexes resting on Late Pliocene sands or thick saprolite. The deformations are shallow, dominantly hydroplastic (high water-table) and led to overconsolidated sands, silts or clays. They reveal normal loading at micro (millimetric) and macro (decametric) scales as controlled by the local rheological properties of the sediments, by strikeslip faults associated with positive flower structures, folding, and intraformational water expulsion or hill slope sliding with reverse microfaulting. All the sites where these features occur, are in the vicinity of presumed active faults or steep slopes in highly fractured Proterozoic basement rocks indicating a possible shear zone. In most cases, these features are not associated with synsedimentary deformation, as strong superficial red soils are generally reworked by them. All these features are reworked by microfaulting after overconsolidation. Additional periglacial phenomena are superimposed on them and are often confused with them. Deformation occurred after the development of Holstenian peats (isotopic stage 11,400 ka BP) at Crozon (Brittany), after 317 ka BP (beginning of isotopic stage 9) in the Vilaine estuary, and in most other sites before the last rubified pedogenesis in the Middle Pleistocene (presumed isotopic stage 9). These dates correspond to the same episode that gave rise to the last main reactivation of the fossil cliff around 300 ka BP and to local uplift. One or several seismic clusters have taken place, probably due to delayed crustal rebound after a major glacial event (stage 10) and to rapid loading resulting from younger ice sheet growth (stage 8). Similar events occurred in late stage 7 and late stage 5. These events might have locally amplified the crustal deformation of the old Brittany and Cornubian Hercynian massifs resulting from a regional stress field especially from 400 ka to 200 ka BP. Stratigraphical, geodynamical and paleoclimatological implications are discussed.

Two-Dimensional (2-D) Acoustic Fish Tracking at River Mile 85, Sacramento River, California

DTIC Science & Technology

2013-06-01

on fish become known (USACE 2004). Levee repair and constructed habitat features included (1) protection of the toe and upper slopes of the bank...be recovered rather than being lost due to sediment dunes , large woody material floating downstream, and vandalism. The RM 85 site was a relatively...into the river channel. The addition of this material narrowed the channel and created a scour feature along the toe of the repair site. VPS array

Remote Sensing in Archaeology: Visible Temporal Change of Archaeological Features of the Peten, Guatemala

NASA Technical Reports Server (NTRS)

Lowry, James D., Jr.

1999-01-01

The purpose of this archaeological research was two-fold; the location of Mayan sites and features in order to learn more of this cultural group, and the (cultural) preservation of these sites and features for the future using Landsat Thematic Mapper (TM) images. Because the rainy season, traditionally at least, lasts about six months (about June to December), the time of year the image is acquired plays an important role in spectral reflectance. Images from 1986, 1995, and 1997 were selected because it was felt they would provide the best opportunity for success in layering different bands from different years together to attempt to see features not completely visible in any one year. False-color composites were created including bands 3, 4, and 5 using a mixture of years and bands. One particular combination that yielded tremendously interesting results included band 5 from 1997, band 4 from 1995, and band 3 from 1986. A number of straight linear features (probably Mayan causeways) run through the bajos that Dr. Sever believes are features previously undiscovered. At this point, early indications are that this will be a successful method for locating "new" Mayan archaeological features in the Peten.

Computer aided diagnosis system for Alzheimer disease using brain diffusion tensor imaging features selected by Pearson's correlation.

PubMed

Graña, M; Termenon, M; Savio, A; Gonzalez-Pinto, A; Echeveste, J; Pérez, J M; Besga, A

2011-09-20

The aim of this paper is to obtain discriminant features from two scalar measures of Diffusion Tensor Imaging (DTI) data, Fractional Anisotropy (FA) and Mean Diffusivity (MD), and to train and test classifiers able to discriminate Alzheimer's Disease (AD) patients from controls on the basis of features extracted from the FA or MD volumes. In this study, support vector machine (SVM) classifier was trained and tested on FA and MD data. Feature selection is done computing the Pearson's correlation between FA or MD values at voxel site across subjects and the indicative variable specifying the subject class. Voxel sites with high absolute correlation are selected for feature extraction. Results are obtained over an on-going study in Hospital de Santiago Apostol collecting anatomical T1-weighted MRI volumes and DTI data from healthy control subjects and AD patients. FA features and a linear SVM classifier achieve perfect accuracy, sensitivity and specificity in several cross-validation studies, supporting the usefulness of DTI-derived features as an image-marker for AD and to the feasibility of building Computer Aided Diagnosis systems for AD based on them. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

Evaluation of nocturnal roost and diurnal sites used by whooping cranes in the Great Plains, United States

USGS Publications Warehouse

Pearse, Aaron T.; Harner, Mary J.; Baasch, David M.; Wright, Greg D.; Caven, Andrew J.; Metzger, Kristine L.

2017-01-17

Endangered whooping cranes (Grus americana) of the Aransas-Wood Buffalo population migrate through the Great Plains twice each year. Although there is much interest in conservation and management for this species, information regarding characteristics of nocturnal roost sites used during migration has been limited and based largely on incidental observations. Using high-quality location data collected concurrently, we directed a companion field study designed to characterize sites used as roost or day-use sites to augment knowledge and assist the Platte River Recovery Implementation Program in identifying migration habitat for restoration, conservation, and management actions along the Platte River in central Nebraska. We collected data at 504 roost sites and 83 day-use sites used by marked whooping cranes in Texas, Oklahoma, Kansas, Nebraska, South Dakota, North Dakota, Minnesota, and Montana. Roost sites were located in emergent wetlands (50 percent), lacustrine wetlands (25 percent), rivers (20 percent), and dryland sites (5 percent). Most day-use sites were characterized as dryland sites (54 percent), with the balance in wetlands (45 percent) and rivers (1 percent). Habitat criteria thresholds initially derived by the Platte River Recovery Implementation Program to represent where 90 percent of whooping cranes used along the Platte River were different from those we measured over a larger section of the migration corridor. For most of the metrics, the Platte River Recovery Implementation Program’s initial habitat criteria thresholds would be considered more conservative than critical values estimated from our data; thus, whooping cranes were seemingly able to tolerate a wider range of these metrics than initially suspected. One exception was the metric distance to nearest disturbance feature, where our results sug­gest that whooping cranes may be less tolerant to nearby dis­turbances in a larger part of the migration corridor compared to the Platte River. We also determined correlations among some metrics and that using the criteria collectively lead to less than 50 percent of sites we measured being considered whooping crane habitat by the Platte River Recovery Implementation Program. A better understanding of how metrics function collectively may be useful for future efforts in defining habitat for migrating whooping cranes.

Stability analysis of chalk sea cliffs using UAV photogrammetry

NASA Astrophysics Data System (ADS)

Barlow, John; Gilham, Jamie

2017-04-01

Cliff erosion and instability poses a significant hazard to communities and infrastructure located is coastal areas. We use point cloud and spectral data derived from close range digital photogrammetry to assess the stability of chalk sea cliffs located at Telscombe, UK. Data captured from an unmanned aerial vehicle (UAV) were used to generate dense point clouds for a 712 m section of cliff face which ranges from 20 to 49 m in height. Generated models fitted our ground control network within a standard error of 0.03 m. Structural features such as joints, bedding planes, and faults were manually mapped and are consistent with results from other studies that have been conducted using direct measurement in the field. Kinematic analysis of these data was used to identify the primary modes of failure at the site. Our results indicate that wedge failure is by far the most likely mode of slope instability. An analysis of sequential surveys taken from the summer of 2016 to the winter of 2017 indicate several large failures have occurred at the site. We establish the volume of failure through change detection between sequential data sets and use back analysis to determine the strength of shear surfaces for each failure. Our results show that data capture through UAV photogrammetry can provide useful information for slope stability analysis over long sections of cliff. The use of this technology offers significant benefits in equipment costs and field time over existing methods.

[Metastatic tumors in the ovary, difficulties of histologic diagnosis].

PubMed

Tamás, Judit; Vereczkey, Ildikó; Tóth, Erika

2015-09-01

The ovary is a common site of metastases. Secondary tumors account for 3-40% of all ovarian malignancies. Most ovarian metastases arise from the colon, although tumors of the breast, stomach and endometrium are also common places of origin. Clinical and histological features of metastatic tumors frequently mimic primary ovarian malignancies, causing serious diagnostic problems for the surgical pathologist. However, differentiation between primary ovarian cancer and ovarian metastasis is important in order to prevent inappropriate management and suboptimal treatment. The distinction between primary and secondary ovarian malignancies is especially difficult in cases when the metastasis is diagnosed before the primary tumor. Frozen section is widely used in the intra-operative assessment of patients with ovarian tumors but it can be very difficult to distinguish certain types of primary ovarian tumors and metastases from other sites. We examined 152 cases of secondary ovarian neoplasm diagnosed at the National Institute of Oncology, Hungary from 2000 to 2014. Colorectal cancer was the most common primary tumor (58 cases), followed by breast (33 cases), endometrium (30 cases) and stomach cancer (13 cases). The differential diagnosis proved the most difficult in cases when endometrioid and mucinous tumors were present in the ovaries. Metastases of colorectal and gastric adenocarcinomas may simulate benign or borderline cystadenomas too. In these cases the knowledge of the patient's history and immunohistochemical stains were helpful. In our study we discuss the diagnostic challenge of distinguishing these secondary ovarian tumors from primary ovarian neoplasms and the limits of the intraoperative frozen sections.

Geospatial Analytics in Retail Site Selection and Sales Prediction.

PubMed

Ting, Choo-Yee; Ho, Chiung Ching; Yee, Hui Jia; Matsah, Wan Razali

2018-03-01

Studies have shown that certain features from geography, demography, trade area, and environment can play a vital role in retail site selection, largely due to the impact they asserted on retail performance. Although the relevant features could be elicited by domain experts, determining the optimal feature set can be intractable and labor-intensive exercise. The challenges center around (1) how to determine features that are important to a particular retail business and (2) how to estimate retail sales performance given a new location? The challenges become apparent when the features vary across time. In this light, this study proposed a nonintervening approach by employing feature selection algorithms and subsequently sales prediction through similarity-based methods. The results of prediction were validated by domain experts. In this study, data sets from different sources were transformed and aggregated before an analytics data set that is ready for analysis purpose could be obtained. The data sets included data about feature location, population count, property type, education status, and monthly sales from 96 branches of a telecommunication company in Malaysia. The finding suggested that (1) optimal retail performance can only be achieved through fulfillment of specific location features together with the surrounding trade area characteristics and (2) similarity-based method can provide solution to retail sales prediction.

US Topo: Topographic Maps for the Nation

USGS Publications Warehouse

Hytes, Patricia L.

2009-01-01

US Topo is the next generation of topographic maps from the U.S. Geological Survey (USGS). Arranged in the familiar 7.5-minute quadrangle format, digital US Topo maps are designed to look and feel (and perform) like the traditional paper topographic maps for which the USGS is so well known. In contrast to paper-based maps, US Topo maps provide modern technical advantages that support faster, wider public distribution and enable basic, on-screen geographic analysis for all users. US Topo maps are available free on the Web. Each map quadrangle is constructed in GeoPDF? format from key layers of geographic data (orthoimagery, roads, geographic names, topographic contours, and hydrographic features) found in The National Map. US Topo quadrangles can be printed from personal computers or plotters as complete, full-sized, maps or in customized sections, in a user-desired specific format. Paper copies of the maps can also be purchased from the USGS Store. Download links and a users guide are featured on the US Topo Web site. US Topo users can turn geographic data layers on and off as needed; they can zoom in and out to highlight specific features or see a broader area. File size for each digital 7.5-minute quadrangle, about 15-20 megabytes, is suitable for most users. Associated electronic tools for geographic analysis are available free for download.

1. Statement of significance, site plan, plan, elevation, section, boxcar ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

1. Statement of significance, site plan, plan, elevation, section, boxcar spring details, and outhouse plan and elevation. - Woods Landing Dance Hall, 2731 State Highway 230, Woods Landing, Albany County, WY

A case history of using high-resolution LiDAR data to support archaeological prediction models in a low-relief area

NASA Astrophysics Data System (ADS)

Pacskó, Vivien; Székely, Balázs; Stibrányi, Máté; Koma, Zsófia

2016-04-01

Hungary is situated in the crossroad of several large-scale infrastructural pathways like transnational pipelines and transcontinental motorways. At the same time the country is rich in known and potential archaeological sites. Archaeological prediction techniques aided by remote sensing are intended to help increase preparedness for archaeological surveying and rescue activities in response to planned new infrastructural developments (e.g., a new pipeline), as they try to estimate the number of potential archaeological sites, area to be surveyed, potential cost and time needed for these activities. In very low-relief areas microtopographic forms may indicate sites, high-resolution LiDAR DTMs are suitable for their detection. Main sources of archaeological prediction models are known archaeological sites, where optimal environmental conditions of settling down existed at historic ages. Hydrological characteristics, relief, geology, vegetation cover and soil are considered to be as most important natural factors. Sorting of the factors and accuracy of the sampling differentiate our models. Resolution of an inductive model depends on the spatial properties of the integrated data: a raster data set can be generated that contains probability values and the reliability of the estimation. The information content of the predictive model is highly influenced by the resolution of the used digital terrain model (DTM): its derivatives (slope, aspect, topographic features) are important inputs of the modelling. The quality of the DTM is even more important in low-relief areas as microtopographic features may indicate archaeological sites. The conventional digital elevation models (SRTM, ASTER GDEM) provide unsatisfying resolution (both in horizontal and vertical senses) as they are rather digital surface models containing the vegetation and the built-up structures. Processed multiecho LiDAR data can be used instead. Our study area is situated in the foothills of the Transdanubian Range characterized by NNW-SSE directed valleys. One of the largest valleys is a conspicuously straight valley section of the River Sárvíz between Székesfehérvár and Szekszárd. Archaeological surveys revealed various settlement remains since the Neolithic. LiDAR data acquisition has been carried out in the framework of an EUFAR project supported by the European Union. Although the weather conditions were not optimal during the flight, sophisticated processing (carried out with of OPALS software) removed most of the artifacts. The resulting 1 m resolution digital terrain model (DTM) has been used to out. This DTM and the known archaeological site locations were integrated in a GIS system for qualitative and quantitative analysis. The processing aimed at analyzing elevation patterns of archaeological sites: local microtopographic features have been outlined and local low-relief elevation data have been extracted and analysed along the Sárvíz valley. Sites have been grouped according to the age of the artifacts identified by the quick-look archaeological walkthrough surveys. The topographic context of these elevation patterns were compared to the relative relief positions of the sites. Some ages groups have confined elevation ranges that may indicate hydrological/climate dependency of the settlement site selection, whereas some long-lived sites can also be identified, typically further away from the local erosional base. Extremely low-relief areas are supposed to have had swampy or partly inundated environmental conditions in ancient times; these areas were unsuitable for human settlement for long time periods. Such areas can be typically attributed by low predictive probabilities, whereas small mounds, patches of topographic unevenness would get higher model probabilities. The final the models can be used for focused field surveys that can improve our archaeological knowledge of the area. The data used were acquired in the framework of the EUFAR ARMSRACE project (to MS), the studies were carried out in project OTKA NK83400 financed by the Hungarian Scientific Research Fund. BS contributed as an Alexander von Humboldt Research Fellow.

Geologic Surface Effects of Underground Nuclear Testing, Buckboard Mesa, Climax Stock, Dome Mountain, Frenchman Flat, Rainier/Aqueduct Mesa, and Shoshone Mountain, Nevada Test Site, Nevada

USGS Publications Warehouse

Grasso, Dennis N.

2003-01-01

Surface effects maps were produced for 72 of 89 underground detonations conducted at the Frenchman Flat, Rainier Mesa and Aqueduct Mesa, Climax Stock, Shoshone Mountain, Buckboard Mesa, and Dome Mountain testing areas of the Nevada Test Site between August 10, 1957 (Saturn detonation, Area 12) and September 18, 1992 (Hunters Trophy detonation, Area 12). The ?Other Areas? Surface Effects Map Database, which was used to construct the maps shown in this report, contains digital reproductions of these original maps. The database is provided in both ArcGIS (v. 8.2) geodatabase format and ArcView (v. 3.2) shapefile format. This database contains sinks, cracks, faults, and other surface effects having a combined (cumulative) length of 136.38 km (84.74 mi). In GIS digital format, the user can view all surface effects maps simultaneously, select and view the surface effects of one or more sites of interest, or view specific surface effects by area or site. Three map layers comprise the database. They are: (1) the surface effects maps layer (oase_n27f), (2) the bar symbols layer (oase_bar_n27f), and (3) the ball symbols layer (oase_ball_n27f). Additionally, an annotation layer, named 'Ball_and_Bar_Labels,' and a polygon features layer, named 'Area12_features_poly_n27f,' are contained in the geodatabase version of the database. The annotation layer automatically labels all 295 ball-and-bar symbols shown on these maps. The polygon features layer displays areas of ground disturbances, such as rock spall and disturbed ground caused by the detonations. Shapefile versions of the polygon features layer in Nevada State Plane and Universal Transverse Mercator projections, named 'area12_features_poly_n27f.shp' and 'area12_features_poly_u83m.shp,' are also provided in the archive.

Spatial Scaling of Environmental Variables Improves Species-Habitat Models of Fishes in a Small, Sand-Bed Lowland River

PubMed Central

Radinger, Johannes; Wolter, Christian; Kail, Jochem

2015-01-01

Habitat suitability and the distinct mobility of species depict fundamental keys for explaining and understanding the distribution of river fishes. In recent years, comprehensive data on river hydromorphology has been mapped at spatial scales down to 100 m, potentially serving high resolution species-habitat models, e.g., for fish. However, the relative importance of specific hydromorphological and in-stream habitat variables and their spatial scales of influence is poorly understood. Applying boosted regression trees, we developed species-habitat models for 13 fish species in a sand-bed lowland river based on river morphological and in-stream habitat data. First, we calculated mean values for the predictor variables in five distance classes (from the sampling site up to 4000 m up- and downstream) to identify the spatial scale that best predicts the presence of fish species. Second, we compared the suitability of measured variables and assessment scores related to natural reference conditions. Third, we identified variables which best explained the presence of fish species. The mean model quality (AUC = 0.78, area under the receiver operating characteristic curve) significantly increased when information on the habitat conditions up- and downstream of a sampling site (maximum AUC at 2500 m distance class, +0.049) and topological variables (e.g., stream order) were included (AUC = +0.014). Both measured and assessed variables were similarly well suited to predict species’ presence. Stream order variables and measured cross section features (e.g., width, depth, velocity) were best-suited predictors. In addition, measured channel-bed characteristics (e.g., substrate types) and assessed longitudinal channel features (e.g., naturalness of river planform) were also good predictors. These findings demonstrate (i) the applicability of high resolution river morphological and instream-habitat data (measured and assessed variables) to predict fish presence, (ii) the importance of considering habitat at spatial scales larger than the sampling site, and (iii) that the importance of (river morphological) habitat characteristics differs depending on the spatial scale. PMID:26569119

Integrated geophysical investigations in a fault zone located on southwestern part of İzmir city, Western Anatolia, Turkey

NASA Astrophysics Data System (ADS)

Drahor, Mahmut G.; Berge, Meriç A.

2017-01-01

Integrated geophysical investigations consisting of joint application of various geophysical techniques have become a major tool of active tectonic investigations. The choice of integrated techniques depends on geological features, tectonic and fault characteristics of the study area, required resolution and penetration depth of used techniques and also financial supports. Therefore, fault geometry and offsets, sediment thickness and properties, features of folded strata and tectonic characteristics of near-surface sections of the subsurface could be thoroughly determined using integrated geophysical approaches. Although Ground Penetrating Radar (GPR), Electrical Resistivity Tomography (ERT) and Seismic Refraction Tomography (SRT) methods are commonly used in active tectonic investigations, other geophysical techniques will also contribute in obtaining of different properties in the complex geological environments of tectonically active sites. In this study, six different geophysical methods used to define faulting locations and characterizations around the study area. These are GPR, ERT, SRT, Very Low Frequency electromagnetic (VLF), magnetics and self-potential (SP). Overall integrated geophysical approaches used in this study gave us commonly important results about the near surface geological properties and faulting characteristics in the investigation area. After integrated interpretations of geophysical surveys, we determined an optimal trench location for paleoseismological studies. The main geological properties associated with faulting process obtained after trenching studies. In addition, geophysical results pointed out some indications concerning the active faulting mechanism in the area investigated. Consequently, the trenching studies indicate that the integrated approach of geophysical techniques applied on the fault problem reveals very useful and interpretative results in description of various properties of faulting zone in the investigation site.

Extraction of Features from High-resolution 3D LiDaR Point-cloud Data

NASA Astrophysics Data System (ADS)

Keller, P.; Kreylos, O.; Hamann, B.; Kellogg, L. H.; Cowgill, E. S.; Yikilmaz, M. B.; Hering-Bertram, M.; Hagen, H.

2008-12-01

Airborne and tripod-based LiDaR scans are capable of producing new insight into geologic features by providing high-quality 3D measurements of the landscape. High-resolution LiDaR is a promising method for studying slip on faults, erosion, and other landscape-altering processes. LiDaR scans can produce up to several billion individual point returns associated with the reflection of a laser from natural and engineered surfaces; these point clouds are typically used to derive a high-resolution digital elevation model (DEM). Currently, there exist only few methods that can support the analysis of the data at full resolution and in the natural 3D perspective in which it was collected by working directly with the points. We are developing new algorithms for extracting features from LiDaR scans, and present method for determining the local curvature of a LiDaR data set, working directly with the individual point returns of a scan. Computing the curvature enables us to rapidly and automatically identify key features such as ridge-lines, stream beds, and edges of terraces. We fit polynomial surface patches via a moving least squares (MLS) approach to local point neighborhoods, determining curvature values for each point. The size of the local point neighborhood is defined by a user. Since both terrestrial and airborne LiDaR scans suffer from high noise, we apply additional pre- and post-processing smoothing steps to eliminate unwanted features. LiDaR data also captures objects like buildings and trees complicating greatly the task of extracting reliable curvature values. Hence, we use a stochastic approach to determine whether a point can be reliably used to estimate curvature or not. Additionally, we have developed a graph-based approach to establish connectivities among points that correspond to regions of high curvature. The result is an explicit description of ridge-lines, for example. We have applied our method to the raw point cloud data collected as part of the GeoEarthScope B-4 project on a section of the San Andreas Fault (Segment SA09). This section provides an excellent test site for our method as it exposes the fault clearly, contains few extraneous structures, and exhibits multiple dry stream-beds that have been off-set by motion on the fault.

Monitoring tobacco brand websites to understand marketing strategies aimed at tobacco product users and potential users.

PubMed

Escobedo, Patricia; Cruz, Tess Boley; Tsai, Kai-Ya; Allem, Jon-Patrick; Soto, Daniel W; Kirkpatrick, Matthew G; Pattarroyo, Monica; Unger, Jennifer B

2017-09-11

Limited information exists about strategies and methods used on brand marketing websites to transmit pro-tobacco messages to tobacco users and potential users. This study compared age verification methods, themes, interactive activities and links to social media across tobacco brand websites. This study examined 12 tobacco brand websites representing four tobacco product categories: cigarettes, cigar/cigarillos, smokeless tobacco, and e-cigarettes. Website content was analyzed by tobacco product category and data from all website visits (n = 699) were analyzed. Adult smokers (n=32) coded websites during a one-year period, indicating whether or not they observed any of 53 marketing themes, seven interactive activities, or five external links to social media sites. Most (58%) websites required online registration before entering, however e-cigarette websites used click-through age verification. Compared to cigarette sites, cigar/cigarillo sites were more likely to feature themes related to "party" lifestyle, and e-cigarette websites were much more likely to feature themes related to harm reduction. Cigarette sites featured greater levels of interactive content compared to other tobacco products. Compared to cigarette sites, cigar/cigarillo sites were more likely to feature activities related to events and music. Compared to cigarette sites, both cigar and e-cigarette sites were more likely to direct visitors to external social media sites. Marketing methods and strategies normalize tobacco use by providing website visitors with positive themes combined with interactive content, and is an area of future research. Moreover, all tobacco products under federal regulatory authority should be required to use more stringent age verification gates. Findings indicate the Food and Drug Administration (FDA) should require brand websites of all tobacco products under its regulatory authority use more stringent age verification gates by requiring all visitors be at least 18 years of age and register online prior to entry. This is important given that marketing strategies may encourage experimentation with tobacco or deter quit attempts among website visitors. Future research should examine the use of interactive activities and social media on a wide variety of tobacco brand websites as interactive content is associated with more active information processing. © The Author 2017. Published by Oxford University Press on behalf of the Society for Research on Nicotine and Tobacco. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

High-Resolution AUV Mapping Reveals Structural Details of Submarine Inflated Lava Flows

NASA Astrophysics Data System (ADS)

Paduan, J.; Clague, D. A.; Caress, D. W.; Thomas, H.; Thompson, D.; Conlin, D.

2009-12-01

The MBARI mapping AUV D. Allan B. has now been used to map volcanic terrain at mid-ocean ridges, back-arc spreading centers, and seamounts. These include the summit caldera and upper south rift zone at Axial Volcano, the summit of Davidson Seamount, the Endeavour hydrothermal fields, the Northeast Lau Spreading Center and West Mata Volcano, and, most recently, the CoAxial, North Cleft and North Gorda historic eruption sites on the Juan de Fuca and Gorda Ridges. ROV and submersible dives at most of these sites have provided groundtruth for the textures and features revealed in the roughly 1-m resolution maps. A prominent feature in the maps from four of the sites are inflated flows that did not deflate or drain. These resemble subaerial tumuli but differ in being located on level terrain, apparently atop or very near eruptive vents instead of being in the distal portions of flows. The largest inflated flow at Axial Volcano is on the caldera floor. The main part is 500 by 300 m, and up to 30 m high, with a lobe that extends another 750 m in a sinuous path. It and two nearby, medium-sized inflated flows were first described from sidescan imagery and a submersible dive by Appelgate and Embley (Bull. Volcanol., 54, 447-458, 1992). The AUV maps show clearly the smooth, gently domed relief of the large inflated flow and its sinuous shape on the seafloor, the medium-sized nearby inflated flows, and several additional smaller ones. Particularly striking is a network of 4 to 10 m deep cracks along the crest of each inflation. The cracks occur 30 to 50 m from the margins on all sides of the wider parts of the inflated flows, and become medial cracks along the entire length of the narrow parts, which are nearly triangular in cross-section. An inflation pit 35 m in diameter has a depth equal to the surrounding lava fields. ROV Doc Ricketts dove on these flows in August 2009 and photographed the deeply cracked, uplifted, once flat-lying lineated and ropy sheet flows that form the inflated flows. An even larger, 2.3 km long, up to 550 m wide, and up to 25 m high, inflated flow lies in the axial valley at North Cleft. Its cross-section is similar to the large one at Axial, but has been subsequently rifted by long tectonic fractures parallel to the axis of spreading. Five small inflated flows also occur within two large sheet flows at CoAxial. An inflated flow at Davidson Seamount off California is 690 by 180 m, and stands 18m above the floor of a steep valley 430 m below the summit. It differs from all the others mapped in that downslope is a part of the same flow that has complex collapse features within pillowed margins. The lava composition here is viscous mugearite rather than MORB.

Munitions related feature extraction from LIDAR data.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roberts, Barry L.

2010-06-01

The characterization of former military munitions ranges is critical in the identification of areas likely to contain residual unexploded ordnance (UXO). Although these ranges are large, often covering tens-of-thousands of acres, the actual target areas represent only a small fraction of the sites. The challenge is that many of these sites do not have records indicating locations of former target areas. The identification of target areas is critical in the characterization and remediation of these sites. The Strategic Environmental Research and Development Program (SERDP) and Environmental Security Technology Certification Program (ESTCP) of the DoD have been developing and implementing techniquesmore » for the efficient characterization of large munitions ranges. As part of this process, high-resolution LIDAR terrain data sets have been collected over several former ranges. These data sets have been shown to contain information relating to former munitions usage at these ranges, specifically terrain cratering due to high-explosives detonations. The location and relative intensity of crater features can provide information critical in reconstructing the usage history of a range, and indicate areas most likely to contain UXO. We have developed an automated procedure using an adaptation of the Circular Hough Transform for the identification of crater features in LIDAR terrain data. The Circular Hough Transform is highly adept at finding circular features (craters) in noisy terrain data sets. This technique has the ability to find features of a specific radius providing a means of filtering features based on expected scale and providing additional spatial characterization of the identified feature. This method of automated crater identification has been applied to several former munitions ranges with positive results.« less

Development and Application of a Three-Dimensional Finite Element Vapor Intrusion Model

PubMed Central

Pennell, Kelly G.; Bozkurt, Ozgur; Suuberg, Eric M.

2010-01-01

Details of a three-dimensional finite element model of soil vapor intrusion, including the overall modeling process and the stepwise approach, are provided. The model is a quantitative modeling tool that can help guide vapor intrusion characterization efforts. It solves the soil gas continuity equation coupled with the chemical transport equation, allowing for both advective and diffusive transport. Three-dimensional pressure, velocity, and chemical concentration fields are produced from the model. Results from simulations involving common site features, such as impervious surfaces, porous foundation sub-base material, and adjacent structures are summarized herein. The results suggest that site-specific features are important to consider when characterizing vapor intrusion risks. More importantly, the results suggest that soil gas or subslab gas samples taken without proper regard for particular site features may not be suitable for evaluating vapor intrusion risks; rather, careful attention needs to be given to the many factors that affect chemical transport into and around buildings. PMID:19418819

FIB-SEM Sectioning Study of Decarburization Products in the Microstructure of HVOF-Sprayed WC-Co Coatings

NASA Astrophysics Data System (ADS)

Katranidis, Vasileios; Gu, Sai; Cox, David C.; Whiting, Mark J.; Kamnis, Spyros

2018-05-01

The thermal dissolution and decarburization of WC-based powders that occur in various spray processes are a widely studied phenomenon, and mechanisms that describe its development have been proposed. However, the exact formation mechanism of decarburization products such as metallic W is not yet established. A WC-17Co coating is sprayed intentionally at an exceedingly long spray distance to exaggerate the decarburization effects. Progressive xenon plasma ion milling of the examined surface has revealed microstructural features that would have been smeared away by conventional polishing. Serial sectioning provided insights on the three-dimensional structure of the decarburization products. Metallic W has been found to form a shell around small splats that did not deform significantly upon impact, suggesting that its crystallization occurs during the in-flight stage of the particles. W2C crystals are more prominent on WC faces that are in close proximity with splat boundaries indicating an accelerated decarburization in such sites. Porosity can be clearly categorized in imperfect intersplat contact and oxidation-generated gases via its shape.

A morphometric study on the cross-sections of the scapular spine in dogs.

PubMed

Ocal, M K; Toros, G

2007-01-01

In cases of unstable scapular body fractures, the base of the scapular spine is one of the sites where there is adequate bone for the application of plate fixation in dogs. In this type of fixation, the amount of bone is an important factor with regard to the holding power of the screw from the biomechanical viewpoint. Therefore, the aim of this paper is to present the detailed quantitative features of the sectional area of the scapular spine in dogs. A total of 28 scapulas from 14 dogs were used, and each was divided into 10 equal slices The height of the scapular spine, depths of the supra-spinous and infraspinus fossae were measured from the scanned images with the aid of a computer program. The results showed that the depth of the supraspinous fossa was greater in the ventral half of the spine, while the depth of the infraspinous was greater in the dorsal half. The differences between the depths of the two fossae were noticeable in the ventral half of the scapular spine.

The 27-28 October 1986 FIRE IFO cirrus case study - Cloud optical properties determined by High Spectral Resolution Lidar

NASA Technical Reports Server (NTRS)

Grund, C. J.; Eloranta, E. W.

1990-01-01

The High Spectral Resolution Lidar (HSRL) was operated from a roof-top site in Madison, Wisconsin. The transmitter configuration used to acquire the case study data produces about 50 mW of ouput power and achieved eye-safe, direct optical depth, and backscatter cross section measurements with 10 min averaging times. A new continuously pumped, injection seeded, frequency doubled Nd:YAG laser transmitter reduces time-averaging constraints by a factor of about 10, while improving the aerosol-molecular signal separation capabilities and wavelength stability of the instrument. The cirrus cloud backscatter-phase functions have been determined for the October 27-28, 1986 segment of the HSRL FIRE dataset. Features exhibiting backscatter cross sections ranging over four orders of magnitude have been observed within this 33 h period. During this period, cirrus clouds were observed with optical thickness ranging from 0.01 to 1.4. The altitude relationship between cloud top and bottom boundaries and the optical center of the cloud is influenced by the type of formation observed.

A Predictive Model of Intein Insertion Site for Use in the Engineering of Molecular Switches

PubMed Central

Apgar, James; Ross, Mary; Zuo, Xiao; Dohle, Sarah; Sturtevant, Derek; Shen, Binzhang; de la Vega, Humberto; Lessard, Philip; Lazar, Gabor; Raab, R. Michael

2012-01-01

Inteins are intervening protein domains with self-splicing ability that can be used as molecular switches to control activity of their host protein. Successfully engineering an intein into a host protein requires identifying an insertion site that permits intein insertion and splicing while allowing for proper folding of the mature protein post-splicing. By analyzing sequence and structure based properties of native intein insertion sites we have identified four features that showed significant correlation with the location of the intein insertion sites, and therefore may be useful in predicting insertion sites in other proteins that provide native-like intein function. Three of these properties, the distance to the active site and dimer interface site, the SVM score of the splice site cassette, and the sequence conservation of the site showed statistically significant correlation and strong predictive power, with area under the curve (AUC) values of 0.79, 0.76, and 0.73 respectively, while the distance to secondary structure/loop junction showed significance but with less predictive power (AUC of 0.54). In a case study of 20 insertion sites in the XynB xylanase, two features of native insertion sites showed correlation with the splice sites and demonstrated predictive value in selecting non-native splice sites. Structural modeling of intein insertions at two sites highlighted the role that the insertion site location could play on the ability of the intein to modulate activity of the host protein. These findings can be used to enrich the selection of insertion sites capable of supporting intein splicing and hosting an intein switch. PMID:22649521

Methods for obtaining true particle size distributions from cross section measurements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lord, Kristina Alyse

2013-01-01

Sectioning methods are frequently used to measure grain sizes in materials. These methods do not provide accurate grain sizes for two reasons. First, the sizes of features observed on random sections are always smaller than the true sizes of solid spherical shaped objects, as noted by Wicksell [1]. This is the case because the section very rarely passes through the center of solid spherical shaped objects randomly dispersed throughout a material. The sizes of features observed on random sections are inversely related to the distance of the center of the solid object from the section [1]. Second, on a planemore » section through the solid material, larger sized features are more frequently observed than smaller ones due to the larger probability for a section to come into contact with the larger sized portion of the spheres than the smaller sized portion. As a result, it is necessary to find a method that takes into account these reasons for inaccurate particle size measurements, while providing a correction factor for accurately determining true particle size measurements. I present a method for deducing true grain size distributions from those determined from specimen cross sections, either by measurement of equivalent grain diameters or linear intercepts.« less

Biological and functional relevance of CASP predictions.

PubMed

Liu, Tianyun; Ish-Shalom, Shirbi; Torng, Wen; Lafita, Aleix; Bock, Christian; Mort, Matthew; Cooper, David N; Bliven, Spencer; Capitani, Guido; Mooney, Sean D; Altman, Russ B

2018-03-01

Our goal is to answer the question: compared with experimental structures, how useful are predicted models for functional annotation? We assessed the functional utility of predicted models by comparing the performances of a suite of methods for functional characterization on the predictions and the experimental structures. We identified 28 sites in 25 protein targets to perform functional assessment. These 28 sites included nine sites with known ligand binding (holo-sites), nine sites that are expected or suggested by experimental authors for small molecule binding (apo-sites), and Ten sites containing important motifs, loops, or key residues with important disease-associated mutations. We evaluated the utility of the predictions by comparing their microenvironments to the experimental structures. Overall structural quality correlates with functional utility. However, the best-ranked predictions (global) may not have the best functional quality (local). Our assessment provides an ability to discriminate between predictions with high structural quality. When assessing ligand-binding sites, most prediction methods have higher performance on apo-sites than holo-sites. Some servers show consistently high performance for certain types of functional sites. Finally, many functional sites are associated with protein-protein interaction. We also analyzed biologically relevant features from the protein assemblies of two targets where the active site spanned the protein-protein interface. For the assembly targets, we find that the features in the models are mainly determined by the choice of template. © 2017 The Authors Proteins: Structure, Function and Bioinformatics Published by Wiley Periodicals, Inc.

View of EPA Farm cattle shelter (featuring horse trailer), facing ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

View of EPA Farm cattle shelter (featuring horse trailer), facing northwest - Nevada Test Site, Environmental Protection Agency Farm, Shelter Unit Type, Area 15, Yucca Flat, 10-2 Road near Circle Road, Mercury, Nye County, NV

Why SRS Matters - F Area

ScienceCinema

Howell, Steve; Tadlock, Bill; Beeler, Dewitt; Gardner, Curt

2018-06-22

A video series presenting an overview of the Savannah River Site's (SRS) mission and operations. Each episode features a specific area/operation and how it contributes to help make the world safer. This episode features F Area's mission and operations.

Why SRS Matters - E Area

ScienceCinema

Howell, Steve; Mooneyhan, Verne; Tempel, Kevin; Bullington, Michele

2018-06-22

A video series presenting an overview of the Savannah River Site's (SRS) mission and operations. Each episode features a specific area/operation and how it contributes to help make the world safer. This episode features E Area's mission and operations.

Hospital's redesigned Web site patient-friendly, comprehensive. Site one-of-a-kind in Twin Cities market area.

PubMed

Rees, T

2001-01-01

North Memorial Medical Center, Robbinsdale, Minn., has opened a brightly redesigned Web site. It is patient-friendly and features a different approach to provide healthcare information called "care areas," which are organized by condition, such as heart care, cancer care and childbirth. This approach led to the the site being named North Memorial Online Care Center.

Genome-Wide Locations of Potential Epimutations Associated with Environmentally Induced Epigenetic Transgenerational Inheritance of Disease Using a Sequential Machine Learning Prediction Approach.

PubMed

Haque, M Muksitul; Holder, Lawrence B; Skinner, Michael K

2015-01-01

Environmentally induced epigenetic transgenerational inheritance of disease and phenotypic variation involves germline transmitted epimutations. The primary epimutations identified involve altered differential DNA methylation regions (DMRs). Different environmental toxicants have been shown to promote exposure (i.e., toxicant) specific signatures of germline epimutations. Analysis of genomic features associated with these epimutations identified low-density CpG regions (<3 CpG / 100bp) termed CpG deserts and a number of unique DNA sequence motifs. The rat genome was annotated for these and additional relevant features. The objective of the current study was to use a machine learning computational approach to predict all potential epimutations in the genome. A number of previously identified sperm epimutations were used as training sets. A novel machine learning approach using a sequential combination of Active Learning and Imbalance Class Learner analysis was developed. The transgenerational sperm epimutation analysis identified approximately 50K individual sites with a 1 kb mean size and 3,233 regions that had a minimum of three adjacent sites with a mean size of 3.5 kb. A select number of the most relevant genomic features were identified with the low density CpG deserts being a critical genomic feature of the features selected. A similar independent analysis with transgenerational somatic cell epimutation training sets identified a smaller number of 1,503 regions of genome-wide predicted sites and differences in genomic feature contributions. The predicted genome-wide germline (sperm) epimutations were found to be distinct from the predicted somatic cell epimutations. Validation of the genome-wide germline predicted sites used two recently identified transgenerational sperm epimutation signature sets from the pesticides dichlorodiphenyltrichloroethane (DDT) and methoxychlor (MXC) exposure lineage F3 generation. Analysis of this positive validation data set showed a 100% prediction accuracy for all the DDT-MXC sperm epimutations. Observations further elucidate the genomic features associated with transgenerational germline epimutations and identify a genome-wide set of potential epimutations that can be used to facilitate identification of epigenetic diagnostics for ancestral environmental exposures and disease susceptibility.

Systems Analysis Programs for Hands-on Integrated Reliability Evaluations (SAPHIRE) Tutorial

DOE Office of Scientific and Technical Information (OSTI.GOV)

C. L. Smith; S. T. Beck; S. T. Wood

2008-08-01

The Systems Analysis Programs for Hands-on Integrated Reliability Evaluations (SAPHIRE) refers to a set of computer programs that were developed to create and analyze probabilistic risk assessment (PRAs). This volume is the tutorial manual for the SAPHIRE system. In this document, a series of lessons are provided that guide the user through basic steps common to most analyses preformed with SAPHIRE. The tutorial is divided into two major sections covering both basic and advanced features. The section covering basic topics contains lessons that lead the reader through development of a probabilistic hypothetical problem involving a vehicle accident, highlighting the program’smore » most fundamental features. The advanced features section contains additional lessons that expand on fundamental analysis features of SAPHIRE and provide insights into more complex analysis techniques. Together, these two elements provide an overview into the operation and capabilities of the SAPHIRE software.« less

A Collection of Features for Semantic Graphs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eliassi-Rad, T; Fodor, I K; Gallagher, B

2007-05-02

Semantic graphs are commonly used to represent data from one or more data sources. Such graphs extend traditional graphs by imposing types on both nodes and links. This type information defines permissible links among specified nodes and can be represented as a graph commonly referred to as an ontology or schema graph. Figure 1 depicts an ontology graph for data from National Association of Securities Dealers. Each node type and link type may also have a list of attributes. To capture the increased complexity of semantic graphs, concepts derived for standard graphs have to be extended. This document explains brieflymore » features commonly used to characterize graphs, and their extensions to semantic graphs. This document is divided into two sections. Section 2 contains the feature descriptions for static graphs. Section 3 extends the features for semantic graphs that vary over time.« less

Essential Information for Post-Encyclopaedic Parliaments: The Italian Case.

ERIC Educational Resources Information Center

Rizzoni, Giovanni

This paper discusses the experiences of the Research Department of the Italian Chamber of Deputies over the past few years. The first section describes the origin of the department in the 1970s, including political factors, basic organizational features, and the salient features of the department's activity. The second section addresses the…

Raising Awareness of Individual Creative Potential in Bioscientists Using a Web-Site Based Approach

ERIC Educational Resources Information Center

Adams, David J.; Hugh-Jones, Siobhan; Sutherland, Ed

2010-01-01

We report the preliminary results of work with a unique, web-site-based approach designed to help individual bioscientists identify and develop their individual creative capacity. The site includes a number of features that encourage individuals to interact with creativity techniques, communicate with colleagues remotely using an electronic notice…

Metropolitan open-space protection with uncertain site availability

Treesearch

Robert G. Haight; Stephanie A. Snyder; Charles S. Revelle

2005-01-01

Urban planners acquire open space to protect natural areas and provide public access to recreation opportunities. Because of limited budgets and dynamic land markets, acquisitions take place sequentially depending on available funds and sites. To address these planning features, we formulated a two-period site selection model with two objectives: maximize the...

Catching (and Keeping!) E-Patrons.

ERIC Educational Resources Information Center

Puacz, Jeanne Holba

2002-01-01

Based on experiences of the Vigo County Public Library in Terre Haute, Indiana, this article outlines ways libraries can attract patrons to their Web sites and features that can keep them returning. Discusses marketing and publicity; basic content and special sources and services; attractive and easy-to-use site design; good Web site maintenance;…

PDNAsite: Identification of DNA-binding Site from Protein Sequence by Incorporating Spatial and Sequence Context

PubMed Central

Zhou, Jiyun; Xu, Ruifeng; He, Yulan; Lu, Qin; Wang, Hongpeng; Kong, Bing

2016-01-01

Protein-DNA interactions are involved in many fundamental biological processes essential for cellular function. Most of the existing computational approaches employed only the sequence context of the target residue for its prediction. In the present study, for each target residue, we applied both the spatial context and the sequence context to construct the feature space. Subsequently, Latent Semantic Analysis (LSA) was applied to remove the redundancies in the feature space. Finally, a predictor (PDNAsite) was developed through the integration of the support vector machines (SVM) classifier and ensemble learning. Results on the PDNA-62 and the PDNA-224 datasets demonstrate that features extracted from spatial context provide more information than those from sequence context and the combination of them gives more performance gain. An analysis of the number of binding sites in the spatial context of the target site indicates that the interactions between binding sites next to each other are important for protein-DNA recognition and their binding ability. The comparison between our proposed PDNAsite method and the existing methods indicate that PDNAsite outperforms most of the existing methods and is a useful tool for DNA-binding site identification. A web-server of our predictor (http://hlt.hitsz.edu.cn:8080/PDNAsite/) is made available for free public accessible to the biological research community. PMID:27282833

Knowledge-transfer learning for prediction of matrix metalloprotease substrate-cleavage sites.

PubMed

Wang, Yanan; Song, Jiangning; Marquez-Lago, Tatiana T; Leier, André; Li, Chen; Lithgow, Trevor; Webb, Geoffrey I; Shen, Hong-Bin

2017-07-18

Matrix Metalloproteases (MMPs) are an important family of proteases that play crucial roles in key cellular and disease processes. Therefore, MMPs constitute important targets for drug design, development and delivery. Advanced proteomic technologies have identified type-specific target substrates; however, the complete repertoire of MMP substrates remains uncharacterized. Indeed, computational prediction of substrate-cleavage sites associated with MMPs is a challenging problem. This holds especially true when considering MMPs with few experimentally verified cleavage sites, such as for MMP-2, -3, -7, and -8. To fill this gap, we propose a new knowledge-transfer computational framework which effectively utilizes the hidden shared knowledge from some MMP types to enhance predictions of other, distinct target substrate-cleavage sites. Our computational framework uses support vector machines combined with transfer machine learning and feature selection. To demonstrate the value of the model, we extracted a variety of substrate sequence-derived features and compared the performance of our method using both 5-fold cross-validation and independent tests. The results show that our transfer-learning-based method provides a robust performance, which is at least comparable to traditional feature-selection methods for prediction of MMP-2, -3, -7, -8, -9 and -12 substrate-cleavage sites on independent tests. The results also demonstrate that our proposed computational framework provides a useful alternative for the characterization of sequence-level determinants of MMP-substrate specificity.

Somatostatin receptors as markers for endocrine tumors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reubi, J.C.

1987-06-19

Endocrine tumors of the gastrointestinal tract are relatively rare neoplasias that secrete large amounts of peptide hormones such as insulin, glucagon, gastrin, or vasoactive intestinal peptide (VIP). These substances are usually responsible for the distinct clinical features observed in patients with such tumors. Although most are relatively slow growing tumors, they may lead in early stages to dramatic symptoms such as hypoglycemia, gastric ulcerations, or watery diarrhea. Unfortunately they are often difficult to localize precisely at that stage. Somatostatin, a tetradecapeptide that inhibits peptide hormone release in various sites such as the pituitary, the pancreas, and the gastrointestinal tract, hasmore » been shown recently to have beneficial effects when given chronically in the form of a stable non-degradable octapeptide analogue (SMS 201-995) in such gastrointestinal endocrine tumors. This essay demonstrates with autoradiographic techniques the very high density of somatostatin receptors in one case of human gastrinoma. A hematoxylineosin-stained histologic section reveals a well-defined, 2-mm-long tumor surrounded by normal tissue. After incubation of the section with an iodinated somatostatin analogue (/sup 125/I-(Leu, D-Trp, Tyr)-somatostatin-28), the distribution of somatostatin receptors was visualized on tritium-sensitive films after a one-week exposure of the section in x-ray cassettes.« less

Fabrication, Testing and Modeling of the MICE Superconducting Spectrometer Solenoids

DOE Office of Scientific and Technical Information (OSTI.GOV)

Virostek, S.P.; Green, M.A.; Trillaud, F.

2010-05-16

The Muon Ionization Cooling Experiment (MICE), an international collaboration sited at Rutherford Appleton Laboratory in the UK, will demonstrate ionization cooling in a section of realistic cooling channel using a muon beam. A five-coil superconducting spectrometer solenoid magnet will provide a 4 tesla uniform field region at each end of the cooling channel. Scintillating fiber trackers within the 400 mm diameter magnet bore tubes measure the emittance of the beam as it enters and exits the cooling channel. Each of the identical 3-meter long magnets incorporates a three-coil spectrometer magnet section and a two-coil section to match the solenoid uniformmore » field into the other magnets of the MICE cooling channel. The cold mass, radiation shield and leads are currently kept cold by means of three two-stage cryocoolers and one single-stage cryocooler. Liquid helium within the cold mass is maintained by means of a re-condensation technique. After incorporating several design changes to improve the magnet cooling and reliability, the fabrication and acceptance testing of the spectrometer solenoids have proceeded. The key features of the spectrometer solenoid magnets, the development of a thermal model, the results of the recently completed tests, and the current status of the project are presented.« less

Lava Tubes as Martian Analog sites on Hawaii Island

NASA Astrophysics Data System (ADS)

Andersen, Christian; Hamilton, J. C.; Adams, M.

2013-10-01

The existence of geologic features similar to skylights seen in Mars Reconnaissance Orbiter HIRISE imagery suggest Martian lava tube networks. Along with pit craters, these features are evidence of a past era of vulcanism. If these were contemporary with the wet Mars eras, then it is suggestive that any Martian life may have retreated into these subsurface oases. Hawaii island has numerous lava tubes of differing ages, humidity, lengths and sizes that make ideal analog test environments for future Mars exploration. PISCES has surveyed multiple candidate sites during the past summer with a team of University of Hawaii at Hilo student interns. It should be noted that Lunar features have also been similarly discovered via Lunar Reconnaissance Orbiter LROC imagery.

77 FR 3768 - Agency Information Collection Activities; Proposed Collection; Comment Request

Federal Register 2010, 2011, 2012, 2013, 2014

2012-01-25

... the TSCA Section 8(b) Inventory Data Base, Production and Site Reports'' and identified by EPA ICR No... section 8. Title: Partial Update of the TSCA Section 8(b) Inventory Data Base, Production and Site Reports... assumptions that you used. 3. Provide copies of any technical information and/or data you used that support...

Localized thin-section CT with radiomics feature extraction and machine learning to classify early-detected pulmonary nodules from lung cancer screening

NASA Astrophysics Data System (ADS)

Tu, Shu-Ju; Wang, Chih-Wei; Pan, Kuang-Tse; Wu, Yi-Cheng; Wu, Chen-Te

2018-03-01

Lung cancer screening aims to detect small pulmonary nodules and decrease the mortality rate of those affected. However, studies from large-scale clinical trials of lung cancer screening have shown that the false-positive rate is high and positive predictive value is low. To address these problems, a technical approach is greatly needed for accurate malignancy differentiation among these early-detected nodules. We studied the clinical feasibility of an additional protocol of localized thin-section CT for further assessment on recalled patients from lung cancer screening tests. Our approach of localized thin-section CT was integrated with radiomics features extraction and machine learning classification which was supervised by pathological diagnosis. Localized thin-section CT images of 122 nodules were retrospectively reviewed and 374 radiomics features were extracted. In this study, 48 nodules were benign and 74 malignant. There were nine patients with multiple nodules and four with synchronous multiple malignant nodules. Different machine learning classifiers with a stratified ten-fold cross-validation were used and repeated 100 times to evaluate classification accuracy. Of the image features extracted from the thin-section CT images, 238 (64%) were useful in differentiating between benign and malignant nodules. These useful features include CT density (p  =  0.002 518), sigma (p  =  0.002 781), uniformity (p  =  0.032 41), and entropy (p  =  0.006 685). The highest classification accuracy was 79% by the logistic classifier. The performance metrics of this logistic classification model was 0.80 for the positive predictive value, 0.36 for the false-positive rate, and 0.80 for the area under the receiver operating characteristic curve. Our approach of direct risk classification supervised by the pathological diagnosis with localized thin-section CT and radiomics feature extraction may support clinical physicians in determining truly malignant nodules and therefore reduce problems in lung cancer screening.

Localized thin-section CT with radiomics feature extraction and machine learning to classify early-detected pulmonary nodules from lung cancer screening.

PubMed

Tu, Shu-Ju; Wang, Chih-Wei; Pan, Kuang-Tse; Wu, Yi-Cheng; Wu, Chen-Te

2018-03-14

Lung cancer screening aims to detect small pulmonary nodules and decrease the mortality rate of those affected. However, studies from large-scale clinical trials of lung cancer screening have shown that the false-positive rate is high and positive predictive value is low. To address these problems, a technical approach is greatly needed for accurate malignancy differentiation among these early-detected nodules. We studied the clinical feasibility of an additional protocol of localized thin-section CT for further assessment on recalled patients from lung cancer screening tests. Our approach of localized thin-section CT was integrated with radiomics features extraction and machine learning classification which was supervised by pathological diagnosis. Localized thin-section CT images of 122 nodules were retrospectively reviewed and 374 radiomics features were extracted. In this study, 48 nodules were benign and 74 malignant. There were nine patients with multiple nodules and four with synchronous multiple malignant nodules. Different machine learning classifiers with a stratified ten-fold cross-validation were used and repeated 100 times to evaluate classification accuracy. Of the image features extracted from the thin-section CT images, 238 (64%) were useful in differentiating between benign and malignant nodules. These useful features include CT density (p  =  0.002 518), sigma (p  =  0.002 781), uniformity (p  =  0.032 41), and entropy (p  =  0.006 685). The highest classification accuracy was 79% by the logistic classifier. The performance metrics of this logistic classification model was 0.80 for the positive predictive value, 0.36 for the false-positive rate, and 0.80 for the area under the receiver operating characteristic curve. Our approach of direct risk classification supervised by the pathological diagnosis with localized thin-section CT and radiomics feature extraction may support clinical physicians in determining truly malignant nodules and therefore reduce problems in lung cancer screening.

Clinical, Biologic, and Prognostic Differences on the Basis of Primary Tumor Site in Neuroblastoma: A Report From the International Neuroblastoma Risk Group Project

PubMed Central

Vo, Kieuhoa T.; Matthay, Katherine K.; Neuhaus, John; London, Wendy B.; Hero, Barbara; Ambros, Peter F.; Nakagawara, Akira; Miniati, Doug; Wheeler, Kate; Pearson, Andrew D.J.; Cohn, Susan L.; DuBois, Steven G.

2014-01-01

Purpose Neuroblastoma (NB) is a heterogeneous tumor arising from sympathetic tissues. The impact of primary tumor site in influencing the heterogeneity of NB remains unclear. Patients and Methods Children younger than age 21 years diagnosed with NB or ganglioneuroblastoma between 1990 and 2002 and with known primary site were identified from the International Neuroblastoma Risk Group database. Data were compared between sites with respect to clinical and biologic features, as well as event-free survival (EFS) and overall survival (OS). Results Among 8,369 children, 47% had adrenal tumors. All evaluated clinical and biologic variables differed statistically between primary sites. The features that were > 10% discrepant between sites were stage 4 disease, MYCN amplification, elevated ferritin, elevated lactate dehydrogenase, and segmental chromosomal aberrations, all of which were more frequent in adrenal versus nonadrenal tumors (P < .001). Adrenal tumors were more likely than nonadrenal tumors (adjusted odds ratio, 2.09; 95% CI, 1.67 to 2.63; P < .001) and thoracic tumors were less likely than nonthoracic tumors (adjusted odds ratio, 0.20; 95% CI, 0.11 to 0.39; P < .001) to have MYCN amplification after controlling for age, stage, and histologic grade. EFS and OS differed significantly according to the primary site (P < .001 for both comparisons). After controlling for age, MYCN status, and stage, patients with adrenal tumors had higher risk for events (hazard ratio, 1.13 compared with nonadrenal tumors; 95% CI, 1.03 to 1.23; P = .008), and patients with thoracic tumors had lower risk for events (HR, 0.79 compared with nonthoracic; 95% CI, 0.67 to 0.92; P = .003). Conclusion Clinical and biologic features show important differences by NB primary site, with adrenal and thoracic sites associated with inferior and superior survival, respectively. Future studies will need to investigate the biologic origin of these differences. PMID:25154816

Using environmental heterogeneity to plan for sea-level rise.

PubMed

Hunter, Elizabeth A; Nibbelink, Nathan P

2017-12-01

Environmental heterogeneity is increasingly being used to select conservation areas that will provide for future biodiversity under a variety of climate scenarios. This approach, termed conserving nature's stage (CNS), assumes environmental features respond to climate change more slowly than biological communities, but will CNS be effective if the stage were to change as rapidly as the climate? We tested the effectiveness of using CNS to select sites in salt marshes for conservation in coastal Georgia (U.S.A.), where environmental features will change rapidly as sea level rises. We calculated species diversity based on distributions of 7 bird species with a variety of niches in Georgia salt marshes. Environmental heterogeneity was assessed across six landscape gradients (e.g., elevation, salinity, and patch area). We used 2 approaches to select sites with high environmental heterogeneity: site complementarity (environmental diversity [ED]) and local environmental heterogeneity (environmental richness [ER]). Sites selected based on ER predicted present-day species diversity better than randomly selected sites (up to an 8.1% improvement), were resilient to areal loss from SLR (1.0% average areal loss by 2050 compared with 0.9% loss of randomly selected sites), and provided habitat to a threatened species (0.63 average occupancy compared with 0.6 average occupancy of randomly selected sites). Sites selected based on ED predicted species diversity no better or worse than random and were not resilient to SLR (2.9% average areal loss by 2050). Despite the discrepancy between the 2 approaches, CNS is a viable strategy for conservation site selection in salt marshes because the ER approach was successful. It has potential for application in other coastal areas where SLR will affect environmental features, but its performance may depend on the magnitude of geological changes caused by SLR. Our results indicate that conservation planners that had heretofore excluded low-lying coasts from CNS planning could include coastal ecosystems in regional conservation strategies. © 2017 Society for Conservation Biology.

49 CFR 236.386 - Restoring feature on power switches.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 49 Transportation 4 2011-10-01 2011-10-01 false Restoring feature on power switches. 236.386 Section 236.386 Transportation Other Regulations Relating to Transportation (Continued) FEDERAL RAILROAD... Inspection and Tests § 236.386 Restoring feature on power switches. Restoring feature on power switches shall...

49 CFR 236.386 - Restoring feature on power switches.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 49 Transportation 4 2010-10-01 2010-10-01 false Restoring feature on power switches. 236.386 Section 236.386 Transportation Other Regulations Relating to Transportation (Continued) FEDERAL RAILROAD... Inspection and Tests § 236.386 Restoring feature on power switches. Restoring feature on power switches shall...

49 CFR 236.386 - Restoring feature on power switches.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 49 Transportation 4 2012-10-01 2012-10-01 false Restoring feature on power switches. 236.386 Section 236.386 Transportation Other Regulations Relating to Transportation (Continued) FEDERAL RAILROAD... Inspection and Tests § 236.386 Restoring feature on power switches. Restoring feature on power switches shall...

49 CFR 236.386 - Restoring feature on power switches.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 49 Transportation 4 2014-10-01 2014-10-01 false Restoring feature on power switches. 236.386 Section 236.386 Transportation Other Regulations Relating to Transportation (Continued) FEDERAL RAILROAD... Inspection and Tests § 236.386 Restoring feature on power switches. Restoring feature on power switches shall...

49 CFR 236.386 - Restoring feature on power switches.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 49 Transportation 4 2013-10-01 2013-10-01 false Restoring feature on power switches. 236.386 Section 236.386 Transportation Other Regulations Relating to Transportation (Continued) FEDERAL RAILROAD... Inspection and Tests § 236.386 Restoring feature on power switches. Restoring feature on power switches shall...

76 FR 39401 - Proposed Administrative Settlement Agreement under Section 122(h) of the Comprehensive...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-06

... Landfill Superfund Site, City of Pleasantville and Egg Harbor Township, Atlantic County, NJ AGENCY... Pleasantville and Egg Harbor Township, Atlantic County, New Jersey (``Site''). In accordance with Section 122(i...

Modern erosion rates and loss of coastal features and sites, Beaufort Sea coastline, Alaska

USGS Publications Warehouse

Jones, Benjamin M.; Hinkel, Kenneth M.; Arp, C.D.; Eisner, Wendy R.

2008-01-01

This study presents modern erosion rate measurements based upon vertical aerial photography captured in 1955, 1979, and 2002 for a 100 km segment of the Beaufort Sea coastline. Annual erosion rates from 1955 to 2002 averaged 5.6 m a-1. However, mean erosion rates increased from 5.0 m a-1 in 1955-79 to 6.2 m a-1 in 1979-2002. Furthermore, from the first period to the second, erosion rates increased at 60% (598) of the 992 sites analyzed, decreased at 31% (307), and changed less than ?? 30 cm at 9% (87). Historical observations and quantitative studies over the past 175 years allowed us to place our erosion rate measurements into a longer-term context. Several of the coastal features along this stretch of coastline received Western place names during the Dease and Simpson expedition in 1837, and the majority of those features had been lost by the early 1900s as a result of coastline erosion, suggesting that erosion has been active over at least the historical record. Incorporation of historical and modern observations also allowed us to detect the loss of both cultural and historical sites and modern infrastructure. U.S. Geological Survey topographic maps reveal a number of known cultural and historical sites, as well as sites with modern infrastructure constructed as recently as the 1950s, that had disappeared by the early 2000s as a result of coastal erosion. We were also able to identify sites that are currently being threatened by an encroaching coastline. Our modern erosion rate measurements can potentially be used to predict when a historical site or modern infrastructure will be affected if such erosion rates persist. ?? The Arctic Institute of North America.

Blasting for abandoned-mine land reclamation (closure of individual subsidence features and erratic, undocumented underground coal-mine workings). Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Workman, J.L.; Thompson, J.

1991-01-01

The study has examined the feasibility of blasting for mitigating various abandoned mine land features on AML sites. The investigation included extensive field trial blasts at sites in North Dakota and Montana. A blasting technique was used that was based on spherical cratering concepts. At the Beulah, North Dakota site thirteen individual vertical openings (sinkholes) were blasted with the intent to fill the voids. The blasts were designed to displace material laterally into the void. Good success was had in filling the sinkholes. At the White site in Montana erratic underground rooms with no available documentation were collapsed. An aditmore » leading into the mine was also blasted. Both individual room blasting and area pattern blasting were studied. A total of eight blasts were fired on the one acre area. Exploration requirements and costs were found to be extensive.« less

Ground-penetrating radar and electromagnetic surveys at the Monroe Crossroads battlefield site, Fort Bragg, North Carolina

USGS Publications Warehouse

Kessler, Richard; Strain, R.E.; Marlowe, J. I.; Currin, K.B.

1996-01-01

A ground-penetrating radar survey was conducted at the Monroe Crossroads Battlefield site at Fort Bragg, North Carolina, to determine possible locations of subsurface archaeological features. An electromagnetic survey also was conducted at the site to verify and augment the ground-penetrating radar data. The surveys were conducted over a 67,200-square-foot grid with a grid point spacing of 20 feet. During the ground-penetrating radar survey, 87 subsurface anomalies were detected based on visual inspection of the field records. These anomalies were flagged in the field as they appeared on the ground-penetrating radar records and were located by a land survey. The electromagnetic survey produced two significant readings at ground-penetrating radar anomaly locations. The National Park Service excavated 44 of the 87 anomaly locations at the Civil War battlefield site. Four of these excavations produced significant archaeological features, including one at an abandoned well.

US Department of Energy response to standards for remedial actions at inactive uranium processing sites: Proposed rule

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1988-01-29

The Title I groundwater standards for inactive uranium mill tailings sites, which were promulgated on January 5, 1983, by the US Environmental Protection Agency (EPA) for the Uranium Mill Tailings Remedial Action (UMTRA) Project, were remanded to the EPA on September 3, 1985, by the US Tenth Circuit Court of Appeals. The Court instructed the EPA to compile general groundwater standards for all Title I sites. On September 24, 1987, the EPA published proposed standards (52FR36000-36008) in response to the remand. This report includes an evaluation of the potential effects of the proposed EPA groundwater standards on the UMTRA Project,more » as well as a discussion of the DOE's position on the proposed standards. The report also contains and appendix which provides supporting information and cost analyses. In order to assess the impacts of the proposed EPA standards, this report summarizes the proposed EPA standards in Section 2.0. The next three sections assess the impacts of the three parts of the EPA standards: Subpart A considers disposal sites; Subpart B is concerned with restoration at processing sites; and Subpart C addresses supplemental standards. Section 6.0 integrates previous sections into a recommendations section. Section 7.0 contains the DOE response to questions posed by the EPA in the preamble to the proposed standards. 6 refs., 5 figs., 3 tabs.« less

Installation restoration program. Site investigation report. Volume 1: Section 1 through 6. 155th Air Refueling Group, Nebraska Air National Guard, Lincoln, Nebraska. Revision 04. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1995-04-01

Site Investigation Report, Volume 1: Sections 1 through 6, Appendix A. A Site Investigation was performed at the 155th Air Refueling Group at Lincoln, NE to evaluate six areas of suspected contamination identified during a Preliminary Assessment. The sites that this investigation were conducted at are: Site 1- Fuel Farm, POL Storage Area, Site 2 - West End of Old Oak Creek, Site 3 Former Tank Cleaning/Hazardous Waste Storage Area, Site 4 - Access Road, Dust Control Area, , Site 5 - Army National Guard Oil Storage Area, and Site 6 - Hydraulic Pressure Check Unit Storage Area. The reportmore » recommended no further action for Sites 3 through 6 due to low levels or no contamination being found. The report recommended that the portion of Site 2 that is located downstream of Site 1 should be included in Site 1.« less

Incidence and Clinical Features of Respiratory Syncytial Virus Infections in a Population-Based Surveillance Site in the Nile Delta Region

DTIC Science & Technology

2013-01-01

S U P P L E M E N T A R T I C L E Incidence and Clinical Features of Respiratory Syncytial Virus Infections in a Population-Based Surveillance Site...19a. NAME OF RESPONSIBLE PERSON a. REPORT unclassified b. ABSTRACT unclassified c . THIS PAGE unclassified Standard Form 298 (Rev. 8-98...Patients of any age were eligible if they presented with ≥1 sign of acute infection, (docu- mented fever ≥38° C or history of subjective fever with

Devil's Slide: An evolving feature of California's coastal landscape

NASA Astrophysics Data System (ADS)

Thomas, M.; Loague, K.

2013-12-01

Coastal landslides in the United States remain a persistent threat to human life and urban development. The focus of this study is a landslide-prone section of the central California coastline, approximately 20 km south of San Francisco, known as Devil's Slide. This investigation employs an extensive aerial image inventory, digital elevation models (DEMs), and a water balance / limit-equilibrium approach to better understand the spatial and temporal characteristics of deep-seated bedrock slides at the site. Photographic surveys of the area reveal nearly three kilometers of headscarp and a complex network of slope failures that respond to hydrologic, seismic, and anthropogenic perturbations. DEM analysis suggests that, for a 145-year period (1866 to 2010), the study area experienced an average coastal retreat rate of 0.14 m yr-1 and an average volumetric loss of 11,216 m3 yr-1. At least 38% of the landscape evolution in the steep coastal terrain has been driven by slope failure events. A loosely coupled water balance / limit-equilibrium analysis quantitatively illustrates the precarious nature of the active landslide zone at the site. The slope is shown to be unstable for a large suite of equally-likely scenarios. The analyses presented herein suggest that future work should include a rigorous characterization of pore-water pressure development, driven by comprehensive simulations of subsurface hydrologic response, to improve our understanding of slope failure initiation at the Devil's Slide site.

226. Early construction on section 2A1. This was the site ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

226. Early construction on section 2-A-1. This was the site of the first construction on the Blue Ride Parkway. - Blue Ridge Parkway, Between Shenandoah National Park & Great Smoky Mountains, Asheville, Buncombe County, NC

Robust Classification and Segmentation of Planar and Linear Features for Construction Site Progress Monitoring and Structural Dimension Compliance Control

NASA Astrophysics Data System (ADS)

Maalek, R.; Lichti, D. D.; Ruwanpura, J.

2015-08-01

The application of terrestrial laser scanners (TLSs) on construction sites for automating construction progress monitoring and controlling structural dimension compliance is growing markedly. However, current research in construction management relies on the planned building information model (BIM) to assign the accumulated point clouds to their corresponding structural elements, which may not be reliable in cases where the dimensions of the as-built structure differ from those of the planned model and/or the planned model is not available with sufficient detail. In addition outliers exist in construction site datasets due to data artefacts caused by moving objects, occlusions and dust. In order to overcome the aforementioned limitations, a novel method for robust classification and segmentation of planar and linear features is proposed to reduce the effects of outliers present in the LiDAR data collected from construction sites. First, coplanar and collinear points are classified through a robust principal components analysis procedure. The classified points are then grouped using a robust clustering method. A method is also proposed to robustly extract the points belonging to the flat-slab floors and/or ceilings without performing the aforementioned stages in order to preserve computational efficiency. The applicability of the proposed method is investigated in two scenarios, namely, a laboratory with 30 million points and an actual construction site with over 150 million points. The results obtained by the two experiments validate the suitability of the proposed method for robust segmentation of planar and linear features in contaminated datasets, such as those collected from construction sites.

The operation and maintenance of a crest-stage gaging station

USGS Publications Warehouse

Friday, John

1965-01-01

Rigid datum controls must be maintained at the gage site throughout the period of record. Physical changes of the site resulting from flood flows or manmade alterations must be evaluated. If a drainage structure such as a culvert is part of the site features, free-flow conditions must be maintained or obstructions carefully documented.

Cross-section, velocity, and bedload data at two erosion sites on the Tanana River near Fairbanks, Alaska, 1979

USGS Publications Warehouse

Burrows, Robert L.

1980-01-01

In an effort to relate river processes to vertical and lateral erosion at two sites on the Tanana River in the vicinity of Fairbanks, Alaska, measurements of depth, velocity, and bedload-transport rates were made at several sections at each site. To facilitate comparison of the river processes and ongoing erosion, compilation and graphic presentation of the velocity distributions and bedload-transport rates are presented in conjunction with cross-section configuration immediately adjacent to the area of erosion. Dry sieve analyses of the bedload samples give particle-size distribution. Approximately 85 to 95% of the material in transport at both sites was in the sand range (>0.062 millimeter <2.0 millimeter). (USGS)

U.S. Army Environmental Restoration Programs Guidance Manual

DTIC Science & Technology

1998-04-01

without delay. In addition to sampling, the SI usually includes a reconnaissance of the site’s layout, surrounding topographical features , and the...chemical monitoring of some, but not necessarily all, of the following: 2.1.1 Surface Features (topographic mapping, etc.) (natural and manmade features ...include some, but not necessarily all, of the following: 3.1.1 Surface Features 3.1.2 Meteorology 3.1.3 Surface-Water Hydrology 3.1.4 Geology 3.1.5

Archaeological Salvage Excavations at the L.A. Strickland I Site (22Ts765), Tishomingo County, Mississippi.

DTIC Science & Technology

1978-12-01

were identified to genus and when possible to species. These samples give an indication of the wood types present and their proportionate representation...in the features. Nutshells were sorted by genus and weighed. Seeds which retained their diagnostic characteristics were identified and counted. The...Vitis sp.), l persimmon ( Diospyros viiniana) and 1 round seed misiffng all diagnostic features. Feature 2. The sample from Feature 2 contained 55 grams

Brownfields Waterfront Sustainability Pilot, Allentown PA: Technical Memorandum on Conceptual Design Using Low Impact Development

EPA Pesticide Factsheets

This technical memorandum briefly describes the site and the master plan, indicates design constraints considered, specifies recommended LID stormwater techniques and features for sustainable redevelopment of the site, and offers other recommendations.

Bathymetric and velocimetric surveys at highway bridges crossing the Missouri River near Kansas City, Missouri, June 2–4, 2015

USGS Publications Warehouse

Huizinga, Richard J.

2016-06-22

A local spatial minimum average channel-bed elevation at structure A7650 (site 10) compared to adjacent sites may indicate this site is at or near a local feature that controls sediment deposition and scour. The average channel-bed elevation values and the distribution of channel-bed elevations imply that sediment unable to deposit near structure A7650 is flushed downstream and deposits at the next downstream site, structure A5817 (site 11).

Single-Event Upset and Scaling Trends in New Generation of the Commercial SOI PowerPC Microprocessors

NASA Technical Reports Server (NTRS)

Irom, Farokh; Farmanesh, Farhad; Kouba, Coy K.

2006-01-01

Single-event upset effects from heavy ions are measured for Motorola silicon-on-insulator (SOI) microprocessor with 90 nm feature sizes. The results are compared with previous results for SOI microprocessors with feature sizes of 130 and 180 nm. The cross section of the 90 nm SOI processors is smaller than results for 130 and 180 nm counterparts, but the threshold is about the same. The scaling of the cross section with reduction of feature size and core voltage for SOI microprocessors is discussed.

Space Place Prime

NASA Technical Reports Server (NTRS)

Fitzpatrick, Austin J.; Novati, Alexander; Fisher, Diane K.; Leon, Nancy J.; Netting, Ruth

2013-01-01

Space Place Prime is public engagement and education software for use on iPad. It targets a multi-generational audience with news, images, videos, and educational articles from the Space Place Web site and other NASA sources. New content is downloaded daily (or whenever the user accesses the app) via the wireless connection. In addition to the Space Place Web site, several NASA RSS feeds are tapped to provide new content. Content is retained for the previous several days, or some number of editions of each feed. All content is controlled on the server side, so features about the latest news, or changes to any content, can be made without updating the app in the Apple Store. It gathers many popular NASA features into one app. The interface is a boundless, slidable- in-any-direction grid of images, unique for each feature, and iconized as image, video, or article. A tap opens the feature. An alternate list mode presents menus of images, videos, and articles separately. Favorites can be tagged for permanent archive. Face - book, Twitter, and e-mail connections make any feature shareable.

Insights into site formation at Rose Cottage Cave, South Africa, based on the analysis of sediment peels

NASA Astrophysics Data System (ADS)

Kloos, Peter; Miller, Christopher E.; Kritikakis, Panagiotis; Wadley, Lyn

2016-04-01

Rose Cottage Cave (RCC), in South Africa, has been a key site for explaining the origins of modern human behaviour and movement of early modern humans out of Africa. Nine sediment peels were made previously from the profile sections, preserving original materials that provide a record of cultural and environmental change during the late Pleistocene and Holocene. Here, we present the preliminary results of the study of the RCC sediment peels which aims to investigate site formation processes and the implications for site interpretation. Methods used include micromorphology and Fourier Transform Infrared spectroscopy coupled with detailed observations of the peels. The predominance of geogenic processes is demonstrated by the abundance of silt- and sand-sized quartz grains, which entered the site primarily through a crevice at the back of the cave. RCC lacks rich anthropogenic deposits as noted at other Middle Stone Age sites in southern Africa, but anthropogenic input to the sediment is indicated by the presence of charcoal, burnt bone, lithic fragments, fat-derived char and ashes. Clay coating fragments and chaotic microstructures demonstrate that bioturbation and colluvial reworking homogenised much of the deposit and may explain the absence of preserved bedding and rarity of combustion features. Downward movement of water through the sequence, indicated by clay coatings, is the likely cause for poor bone preservation and near lack of ashes at the site, as well as fluctuations in dose rate that have complicated luminescence dating studies. Evidence for diagenesis at the site is in the form of secondary apatite and gypsum. Sedimentary structures such as channel lag deposits and (silt and sand) laminae observed in peels dating between 60 and 35 ka BP suggest a high-energy sedimentary environment, which experienced flooding events that eroded underlying deposits and deposited large volumes of sediment. This explains why some of the post-Howiesons Poort layers contain few artefacts and implies that there may have been more human activity at the site during this time than has previously been suggested.

Silver nanoparticle based surface enhanced Raman scattering spectroscopy of diabetic and normal rat pancreatic tissue under near-infrared laser excitation

NASA Astrophysics Data System (ADS)

Huang, H.; Shi, H.; Feng, S.; Lin, J.; Chen, W.; Huang, Z.; Li, Y.; Yu, Y.; Lin, D.; Xu, Q.; Chen, R.

2013-04-01

This paper presents the use of high spatial resolution silver nanoparticle based near-infrared surface enhanced Raman scattering (SERS) from rat pancreatic tissue to obtain biochrmical information about the tissue. A high quality SERS signal from a mixture of pancreatic tissues and silver nanoparticles can be obtained within 10 s using a Renishaw micro-Raman system. Prominent SERS bands of pancreatic tissue were assigned to known molecular vibrations, such as the vibrations of DNA bases, RNA bases, proteins and lipids. Different tissue structures of diabetic and normal rat pancreatic tissues have characteristic features in SERS spectra. This exploratory study demonstrated great potential for using SERS imaging to distinguish diabetic and normal pancreatic tissues on frozen sections without using dye labeling of functionalized binding sites.

Drill hole logging with infrared spectroscopy

USGS Publications Warehouse

Calvin, W.M.; Solum, J.G.

2005-01-01

Infrared spectroscopy has been used to identify rocks and minerals for over 40 years. The technique is sensitive to primary silicates as well as alteration products. Minerals can be uniquely identified based on multiple absorption features at wavelengths from the visible to the thermal infrared. We are currently establishing methods and protocols in order to use the technique for rapid assessment of downhole lithology on samples obtained during drilling operations. Initial work performed includes spectral analysis of chip cuttings and core sections from drill sites around Desert Peak, NV. In this paper, we report on a survey of 10,000 feet of drill cuttings, at 100 foot intervals, from the San Andreas Fault Observatory at Depth (SAFOD). Data from Blue Mountain geothermal wells will also be acquired. We will describe the utility of the technique for rapid assessment of lithologic and mineralogic discrimination.

Archaeological investigations at a toolstone source area and temporary camp: Sample Unit 19-25, Nevada Test Site, Nye County, Nevada. Technical report No. 77

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jones, R.C.; DuBarton, A.; Edwards, S.

1993-12-31

Archaeological investigations were initiated at Sample Unit 19--25 to retrieve information concerning settlement and subsistence data on the aboriginal hunter and gatherers in the area. Studies included collection and mapping of 35.4 acres at site 26NY1408 and excavation and mapping of 0.02 acres at site 26NY7847. Cultural resources include two rock and brush structures and associated caches and a large lithic toolstone source area and lithic artifact scatter. Temporally diagnostic artifacts indicate periodic use throughout the last 12,000 years; however dates associated with projectile points indicate most use was in the Middle and Late Archaic. Radiocarbon dates from the rockmore » and brush structures at site 26NY7847 indicate a construction date of A.D. 1640 and repair between A.D. 1800 and 1950 for feature 1 and between A.D. 1330 and 1390 and repair at A.D. 1410 for feature 2. The dates associated with feature 2 place its construction significantly earlier than similar structures found elsewhere on Pahute Mesa. Activity areas appear to reflect temporary use of the area for procurement of available lithic and faunal resources and the manufacture of tools.« less

Common structural features of cholesterol binding sites in crystallized soluble proteins

PubMed Central

Bukiya, Anna N.; Dopico, Alejandro M.

2017-01-01

Cholesterol-protein interactions are essential for the architectural organization of cell membranes and for lipid metabolism. While cholesterol-sensing motifs in transmembrane proteins have been identified, little is known about cholesterol recognition by soluble proteins. We reviewed the structural characteristics of binding sites for cholesterol and cholesterol sulfate from crystallographic structures available in the Protein Data Bank. This analysis unveiled key features of cholesterol-binding sites that are present in either all or the majority of sites: i) the cholesterol molecule is generally positioned between protein domains that have an organized secondary structure; ii) the cholesterol hydroxyl/sulfo group is often partnered by Asn, Gln, and/or Tyr, while the hydrophobic part of cholesterol interacts with Leu, Ile, Val, and/or Phe; iii) cholesterol hydrogen-bonding partners are often found on α-helices, while amino acids that interact with cholesterol’s hydrophobic core have a slight preference for β-strands and secondary structure-lacking protein areas; iv) the steroid’s C21 and C26 constitute the “hot spots” most often seen for steroid-protein hydrophobic interactions; v) common “cold spots” are C8–C10, C13, and C17, at which contacts with the proteins were not detected. Several common features we identified for soluble protein-steroid interaction appear evolutionarily conserved. PMID:28420706

statement of significance, location map, site plan, landscape plan, site ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

statement of significance, location map, site plan, landscape plan, site sections, evolution of cemetery landscape. - San Francisco National Cemetery, 1 Lincoln Boulevard, San Francisco, San Francisco County, CA

Metacatalog of Planetary Surface Features for Multicriteria Evaluation of Surface Evolution: the Integrated Planetary Feature Database

NASA Astrophysics Data System (ADS)

Hargitai, Henrik

2016-10-01

We have created a metacatalog, or catalog or catalogs, of surface features of Mars that also includes the actual data in the catalogs listed. The goal is to make mesoscale surface feature databases available in one place, in a GIS-ready format. The databases can be directly imported to ArcGIS or other GIS platforms, like Google Mars. Some of the catalogs in our database are also ingested into the JMARS platform.All catalogs have been previously published in a peer-reviewed journal, but they may contain updates of the published catalogs. Many of the catalogs are "integrated", i.e. they merge databases or information from various papers on the same topic, including references to each individual features listed.Where available, we have included shapefiles with polygon or linear features, however, most of the catalogs only contain point data of their center points and morphological data.One of the unexpected results of the planetary feature metacatalog is that some features have been described by several papers, using different, i.e., conflicting designations. This shows the need for the development of an identification system suitable for mesoscale (100s m to km sized) features that tracks papers and thus prevents multiple naming of the same feature.The feature database can be used for multicriteria analysis of a terrain, thus enables easy distribution pattern analysis and the correlation of the distribution of different landforms and features on Mars. Such catalog makes a scientific evaluation of potential landing sites easier and more effective during the selection process and also supports automated landing site selections.The catalog is accessible at https://planetarydatabase.wordpress.com/.

Archaeological Investigations in the Upper Tombigbee Valley, Mississippi: Phase I. Volume 2.

DTIC Science & Technology

1983-01-01

Macrobotanical Remains in Feature ...... 7.113 7.13 Site 221T576: Inhumation Analysis .................... 7.2H4 7.14 Site 221T576: Percentage Distribution...several aspects of the site stratigraphy provided a viable framework for analysis . Perhaps the most im- portant of the insights gained from the...component. In order to facilitate manipulation of artifact samples from the site, three analytical units were recognized during analysis : Zone 1, which

Efficient sampling of reversible cross-linking polymers: Self-assembly of single-chain polymeric nanoparticles

NASA Astrophysics Data System (ADS)

Oyarzún, Bernardo; Mognetti, Bortolo Matteo

2018-03-01

We present a new simulation technique to study systems of polymers functionalized by reactive sites that bind/unbind forming reversible linkages. Functionalized polymers feature self-assembly and responsive properties that are unmatched by the systems lacking selective interactions. The scales at which the functional properties of these materials emerge are difficult to model, especially in the reversible regime where such properties result from many binding/unbinding events. This difficulty is related to large entropic barriers associated with the formation of intra-molecular loops. In this work, we present a simulation scheme that sidesteps configurational costs by dedicated Monte Carlo moves capable of binding/unbinding reactive sites in a single step. Cross-linking reactions are implemented by trial moves that reconstruct chain sections attempting, at the same time, a dimerization reaction between pairs of reactive sites. The model is parametrized by the reaction equilibrium constant of the reactive species free in solution. This quantity can be obtained by means of experiments or atomistic/quantum simulations. We use the proposed methodology to study the self-assembly of single-chain polymeric nanoparticles, starting from flexible precursors carrying regularly or randomly distributed reactive sites. We focus on understanding differences in the morphology of chain nanoparticles when linkages are reversible as compared to the well-studied case of irreversible reactions. Intriguingly, we find that the size of regularly functionalized chains, in good solvent conditions, is non-monotonous as a function of the degree of functionalization. We clarify how this result follows from excluded volume interactions and is peculiar of reversible linkages and regular functionalizations.

Reconstructing the Quaternary evolution of the world's most active silicic volcanic system: insights from an ˜1.65 Ma deep ocean tephra record sourced from Taupo Volcanic Zone, New Zealand

NASA Astrophysics Data System (ADS)

Allan, Aidan S. R.; Baker, Joel A.; Carter, Lionel; Wysoczanksi, Richard J.

2008-12-01

The Taupo Volcanic Zone (TVZ), central North Island, New Zealand, is the most frequently active Quaternary rhyolitic system in the world. Silicic tephras recovered from Ocean Drilling Programme Site 1123 (41°47.16'S, 171°29.94'W; 3290 m water depth) in the southwest Pacific Ocean provide a well-dated record of explosive TVZ volcanism since ˜1.65 Ma. We present major, minor and trace element data for 70 Quaternary tephra layers from Site 1123 determined by electron probe microanalysis (1314 analyses) and laser ablation inductively coupled plasma mass spectrometry (654 analyses). Trace element data allow for the discrimination of different tephras with similar major element chemistries and the establishment of isochronous tie-lines between three sediment cores (1123A, 1123B and 1123C) recovered from Site 1123. These tephra tie-lines are used to evaluate the stratigraphy and orbitally tuned stable isotope age model of the Site 1123 composite record. Trace element fingerprinting of tephras identifies ˜4.5 m and ˜7.9 m thick sections of repeated sediments in 1123A (49.0-53.5 mbsf [metres below seafloor]) and 1123C (48.1-56.0 mbsf), respectively. These previously unrecognised repeated sections have resulted in significant errors in the Site 1123 composite stratigraphy and age model for the interval 1.15-1.38 Ma and can explain the poor correspondence between δ18O profiles for Site 1123 and Site 849 (equatorial Pacific) during this interval. The revised composite stratigraphy for Site 1123 shows that the 70 tephra layers, when correlated between cores, correspond to ˜37-38 individual eruptive events (tephras), 7 of which can be correlated to onshore TVZ deposits. The frequency of large-volume TVZ-derived silicic eruptions, as recorded by the deposition of tephras at Site 1123, has not been uniform through time. Rather it has been typified by short periods (25-50 ka) of intense activity bracketed by longer periods (100-130 ka) of quiescence. The most active period (at least 1 event per 7 ka) occurred between ˜1.53 and 1.66 Ma, corresponding to the first ˜130 ka of TVZ rhyolitic magmatism. Since 1.2 Ma, ˜80% of tephras preserved at Site 1123 and the more proximal Site 1124 were erupted and deposited during glacial periods. This feature may reflect either enhanced atmospheric transport of volcanic ash to these sites (up to 1000 km from source) during glacial conditions or, more speculatively, that these events are triggered by changes in crustal stress accumulation associated with large amplitude sea-level changes. Only 8 of the ˜37-38 Site 1123 tephra units (˜20%) can be found in all three cores, and 22 tephra units (˜60%) are only present in one of the three cores. Whether a tephra is preserved in all three cores does not have any direct relationship to eruptive volume. Instead it is postulated that tephra preservation at Site 1123 is 'patchy' and influenced by the vigorous nature of their deposition to the deep ocean floor as vertical density currents. At this site, at least 5 cores would need to have been drilled within a proximity of 10's to 100's of metres of each other to yield a >99% chance of recovering all the silicic tephras deposited on the ocean surface above it in the past 1.65 Ma.

StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data.

PubMed

Stavrovskaya, Elena D; Niranjan, Tejasvi; Fertig, Elana J; Wheelan, Sarah J; Favorov, Alexander V; Mironov, Andrey A

2017-10-15

Genomics features with similar genome-wide distributions are generally hypothesized to be functionally related, for example, colocalization of histones and transcription start sites indicate chromatin regulation of transcription factor activity. Therefore, statistical algorithms to perform spatial, genome-wide correlation among genomic features are required. Here, we propose a method, StereoGene, that rapidly estimates genome-wide correlation among pairs of genomic features. These features may represent high-throughput data mapped to reference genome or sets of genomic annotations in that reference genome. StereoGene enables correlation of continuous data directly, avoiding the data binarization and subsequent data loss. Correlations are computed among neighboring genomic positions using kernel correlation. Representing the correlation as a function of the genome position, StereoGene outputs the local correlation track as part of the analysis. StereoGene also accounts for confounders such as input DNA by partial correlation. We apply our method to numerous comparisons of ChIP-Seq datasets from the Human Epigenome Atlas and FANTOM CAGE to demonstrate its wide applicability. We observe the changes in the correlation between epigenomic features across developmental trajectories of several tissue types consistent with known biology and find a novel spatial correlation of CAGE clusters with donor splice sites and with poly(A) sites. These analyses provide examples for the broad applicability of StereoGene for regulatory genomics. The StereoGene C ++ source code, program documentation, Galaxy integration scripts and examples are available from the project homepage http://stereogene.bioinf.fbb.msu.ru/. favorov@sensi.org. Supplementary data are available at Bioinformatics online. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

A first application of marine-controlled source method on gas-hydrate study off SW Taiwan

NASA Astrophysics Data System (ADS)

Chiang, C.; Hsu, S.; Chen, C.; Evans, R. L.

2011-12-01

Bottom simulating reflector (BSR), high methane flux, shallow sulfide/methane interface, fluid gushed from the seafloor, self-carbonate within sediment, methane reef, and self-biome are widely distributed in the offshore of the southwestern Taiwan. These geophysical and geochemistry signatures imply a high gas hydrate reservoir area. However, the upper bound of the gas hydrate and shallow section of the sediment are still unclear. This study shows the results of our first marine controlled-source electromagnetic survey in 2010 and provides the information of shallow sediment around the offshore of southwestern Taiwan. Three target areas were conducted: the southeast of Small Ryukyu Islands (seepage, G96), west of Yung-An Ridge (YAR) and northwest of Good Weather Ridge (GWR). In total, fourteen survey lines have been carried out, and the total survey length is about 72 km. Our preliminary result shows that the resistivity/porosity anomalies within pockmarks and seepages correspond to the features from the sub-bottom profilers. The range of porosity change is 4 % in G96 and YAR sites, while in the GWR site there is up to 8 % of porosity change and implies a high gas hydrate potential area.

15. AERIAL PHOTOGRAPH OF DAM SITE SHOWING SPILLWAY OGEE SECTION ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

15. AERIAL PHOTOGRAPH OF DAM SITE SHOWING SPILLWAY OGEE SECTION AND SPILLWAY APRON EXCAVATION IN FOREGROUND.... Volume XVIII, No. 10, January 18, 1940. - Prado Dam, Spillway, Santa Ana River near junction of State Highways 71 & 91, Corona, Riverside County, CA

Wind Drifts at Viking 1 Landing Site

NASA Technical Reports Server (NTRS)

1997-01-01

This image is of so-called wind drifts seen at the Viking 1 landing site. These are somewhat different from the features seen at the Pathfinder site in two important ways. 1) These landforms have no apparent slip-or avalanche-face as do both terrestrial dunes and the Pathfinder features, and may represent deposits of sediment falling from the air, as opposed to dune sand, which 'hops' or saltates along the ground; 2) these features may indicate erosion on one side, because of the layering and apparent scouring on their right sides. They may, therefore have been deposited by a wind moving left to right, partly or weakly cemented or solidified by surface processes at some later time, then eroded by a second wind (right to left), exposing their internal structure.

Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is a division of the California Institute of Technology (Caltech).

TarPmiR: a new approach for microRNA target site prediction.

PubMed

Ding, Jun; Li, Xiaoman; Hu, Haiyan

2016-09-15

The identification of microRNA (miRNA) target sites is fundamentally important for studying gene regulation. There are dozens of computational methods available for miRNA target site prediction. Despite their existence, we still cannot reliably identify miRNA target sites, partially due to our limited understanding of the characteristics of miRNA target sites. The recently published CLASH (crosslinking ligation and sequencing of hybrids) data provide an unprecedented opportunity to study the characteristics of miRNA target sites and improve miRNA target site prediction methods. Applying four different machine learning approaches to the CLASH data, we identified seven new features of miRNA target sites. Combining these new features with those commonly used by existing miRNA target prediction algorithms, we developed an approach called TarPmiR for miRNA target site prediction. Testing on two human and one mouse non-CLASH datasets, we showed that TarPmiR predicted more than 74.2% of true miRNA target sites in each dataset. Compared with three existing approaches, we demonstrated that TarPmiR is superior to these existing approaches in terms of better recall and better precision. The TarPmiR software is freely available at http://hulab.ucf.edu/research/projects/miRNA/TarPmiR/ CONTACTS: haihu@cs.ucf.edu or xiaoman@mail.ucf.edu Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press.

Initial Field Trial of a Coach-Supported Web-Based Depression Treatment.

PubMed

Schueller, Stephen M; Mohr, David C

2015-08-01

Early web-based depression treatments were often self-guided and included few interactive elements, instead focusing mostly on delivering informational content online. Newer programs include many more types of features. As such, trials should analyze the ways in which people use these sites in order to inform the design of subsequent sites and models of support. The current study describes of a field trial consisting of 9 patients with major depressive disorder who completed a 12-week program including weekly coach calls. Patients usage varied widely, however, patients who formed regular patterns tended to persist with the program for the longest. Future sites might be able to facilitate user engagement by designing features to support regular use and to use coaches to help establish patterns to increase long-term use and benefit.

Effects of management practices on grassland birds: Clay-colored Sparrow

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Nenneman, Melvin P.; Euliss, Betty R.

1998-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Western Meadowlark

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Zimmerman, Amy L.; Euliss, Betty R.

1999-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Chestnut-collared Longspur

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Nenneman, Melvin P.; Euliss, Betty R.

1998-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Baird's Sparrow

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Nenneman, Melvin P.; Euliss, Betty R.

1998-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Nelson's Sharp-tailed Sparrow

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Rabie, Paul A.; Euliss, Betty R.

2002-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: McCown's Longspur

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Rabie, Paul A.; Euliss, Betty R.

1999-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Burrowing Owl

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Rabie, Paul A.; Euliss, Betty R.

1999-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Long-billed Curlew

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Rabie, Paul A.; Euliss, Betty R.

1999-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Upland Sandpiper

USGS Publications Warehouse

Dechant, Jill A.; Dinkins, Meghan F.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Parkin, Barry D.; Euliss, Betty R.

1999-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Lark Sparrow

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Parkin, Barry D.; Euliss, Betty R.

1999-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Horned Lark

USGS Publications Warehouse

Dinkins, Meghan F.; Zimmerman, Amy L.; Dechant, Jill A.; Parkin, Barry D.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Euliss, Betty R.

2000-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Willet

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Parkin, Barry D.; Euliss, Betty R.

1999-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Sedge Wren

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Parkin, Barry D.; Euliss, Betty R.

1998-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Field Sparrow

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Parkin, Barry D.; Euliss, Betty R.

1999-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Bobolink

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Zimmerman, Amy L.; Euliss, Betty R.

1999-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Lark Bunting

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Zimmerman, Amy L.; Euliss, Betty R.

1999-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Vesper Sparrow

USGS Publications Warehouse

Dechant, Jill A.; Dinkins, Meghan F.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Euliss, Betty R.

2000-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Dickcissel

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Zimmerman, Amy L.; Euliss, Betty R.

1999-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Ferruginous Hawk

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Zimmerman, Amy L.; Euliss, Betty R.

1999-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: American Bittern

USGS Publications Warehouse

Dechant, Jill A.; Sondreal, Marriah L.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Zimmerman, Amy L.; Euliss, Betty R.

1999-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Effects of management practices on grassland birds: Swainson's Hawk

USGS Publications Warehouse

Dechant, Jill A.; Dinkins, Meghan F.; Johnson, Douglas H.; Igl, Lawrence D.; Goldade, Christopher M.; Euliss, Betty R.

2000-01-01

Information on the habitat requirements and effects of habitat management on grassland birds were summarized from information in more than 5,500 published and unpublished papers. A range map is provided to indicate the relative densities of the species in North America, based on Breeding Bird Survey (BBS) data. Although birds frequently are observed outside the breeding range indicated, the maps are intended to show areas where managers might concentrate their attention. It may be ineffectual to manage habitat at a site for a species that rarely occurs in an area. The species account begins with a brief capsule statement, which provides the fundamental components or keys to management for the species. A section on breeding range outlines the current breeding distribution of the species in North America, including areas that could not be mapped using BBS data. The suitable habitat section describes the breeding habitat and occasionally microhabitat characteristics of the species, especially those habitats that occur in the Great Plains. Details on habitat and microhabitat requirements often provide clues to how a species will respond to a particular management practice. A table near the end of the account complements the section on suitable habitat, and lists the specific habitat characteristics for the species by individual studies. A special section on prey habitat is included for those predatory species that have more specific prey requirements. The area requirements section provides details on territory and home range sizes, minimum area requirements, and the effects of patch size, edges, and other landscape and habitat features on abundance and productivity. It may be futile to manage a small block of suitable habitat for a species that has minimum area requirements that are larger than the area being managed. The Brown-headed Cowbird (Molothrus ater) is an obligate brood parasite of many grassland birds. The section on cowbird brood parasitism summarizes rates of cowbird parasitism, host responses to parasitism, and factors that influence parasitism, such as nest concealment and host density. The impact of management depends, in part, upon a species' nesting phenology and biology. The section on breeding-season phenology and site fidelity includes details on spring arrival and fall departure for migratory populations in the Great Plains, peak breeding periods, the tendency to renest after nest failure or success, and the propensity to return to a previous breeding site. The duration and timing of breeding varies among regions and years. Species' response to management summarizes the current knowledge and major findings in the literature on the effects of different management practices on the species. The section on management recommendations complements the previous section and summarizes specific recommendations for habitat management provided in the literature. If management recommendations differ in different portions of the species' breeding range, recommendations are given separately by region. The literature cited contains references to published and unpublished literature on the management effects and habitat requirements of the species. This section is not meant to be a complete bibliography; for a searchable, annotated bibliography of published and unpublished papers dealing with habitat needs of grassland birds and their responses to habitat management, use the Grassland and Wetland Birds Bibliography on the home page of this resource.

Fossil hominin radii from the Sima de los Huesos Middle Pleistocene site (Sierra de Atapuerca, Spain).

PubMed

Rodríguez, Laura; Carretero, José Miguel; García-González, Rebeca; Lorenzo, Carlos; Gómez-Olivencia, Asier; Quam, Rolf; Martínez, Ignacio; Gracia-Téllez, Ana; Arsuaga, Juan Luis

2016-01-01

Complete radii in the fossil record preceding recent humans and Neandertals are very scarce. Here we introduce the radial remains recovered from the Sima de los Huesos (SH) site in the Sierra de Atapuerca between 1976 and 2011 and which have been dated in excess of 430 ky (thousands of years) ago. The sample comprises 89 specimens, 49 of which are attributed to adults representing a minimum of seven individuals. All elements are described anatomically and metrically, and compared with other fossil hominins and recent humans in order to examine the phylogenetic polarity of certain radial features. Radial remains from SH have some traits that differentiate them from those of recent humans and make them more similar to Neandertals, including strongly curved shafts, anteroposterior expanded radial heads and both absolutely and relatively long necks. In contrast, the SH sample differs from Neandertals in showing a high overall gracility as well as a high frequency (80%) of an anteriorly oriented radial tuberosity. Thus, like the cranial and dental remains from the SH site, characteristic Neandertal radial morphology is not present fully in the SH radii. We also analyzed the cross-sectional properties of the SH radial sample at two different levels: mid-shaft and at the midpoint of the neck length. When standardized by shaft length, no difference in the mid-shaft cross-sectional properties were found between the SH hominins, Neandertals and recent humans. Nevertheless, due to their long neck length, the SH hominins show a higher lever efficiency than either Neandertals or recent humans. Functionally, the SH radial morphology is consistent with more efficient pronation-supination and flexion-extension movements. The particular trait composition in the SH sample and Neandertals resembles more closely morphology evident in recent human males. Copyright © 2015 Elsevier Ltd. All rights reserved.

Ecological Status of a Patagonian Mountain River: Usefulness of Environmental and Biotic Metrics for Rehabilitation Assessment.

PubMed

Laura, Miserendino M; Adriana, M Kutschker; Cecilia, Brand; La Ludmila, Manna; Cecilia, Prinzio Y Di; Gabriela, Papazian; José, Bava

2016-06-01

This work evaluates the consequences of anthropogenic pressures at different sections of a Patagonian mountain river using a set of environmental and biological measures. A map of risk of soil erosion at a basin scale was also produced. The study was conducted at 12 sites along the Percy River system, where physicochemical parameters, riparian ecosystem quality, habitat condition, plants, and macroinvertebrates were investigated. While livestock and wood collection, the dominant activities at upper and mean basin sites resulted in an important loss of the forest cover still the riparian ecosystem remains in a relatively good status of conservation, as do the in-stream habitat conditions and physicochemical features. Besides, most indicators based on macroinvertebrates revealed that both upper and middle basin sections supported similar assemblages, richness, density, and most functional feeding group attributes. Instead, the lower urbanized basin showed increases in conductivity and nutrient values, poor quality in the riparian ecosystem, and habitat condition. According to the multivariate analysis, ammonia level, elevation, current velocity, and habitat conditions had explanatory power on benthos assemblages. Discharge, naturalness of the river channel, flood plain morphology, conservation status, and percent of urban areas were important moderators of plant composition. Finally, although the present land use in the basin would not produce a significant risk of soil erosion, unsustainable practices that promotes the substitution of the forest for shrubs would lead to severe consequences. Mitigation efforts should be directed to protect headwater forest, restore altered riparian ecosystem, and to control the incipient eutrophication process.

Ecological Status of a Patagonian Mountain River: Usefulness of Environmental and Biotic Metrics for Rehabilitation Assessment

NASA Astrophysics Data System (ADS)

Laura, Miserendino M.; Adriana, M. Kutschker; Cecilia, Brand; La Ludmila, Manna; Cecilia, Prinzio Y. Di; Gabriela, Papazian; José, Bava

2016-06-01

This work evaluates the consequences of anthropogenic pressures at different sections of a Patagonian mountain river using a set of environmental and biological measures. A map of risk of soil erosion at a basin scale was also produced. The study was conducted at 12 sites along the Percy River system, where physicochemical parameters, riparian ecosystem quality, habitat condition, plants, and macroinvertebrates were investigated. While livestock and wood collection, the dominant activities at upper and mean basin sites resulted in an important loss of the forest cover still the riparian ecosystem remains in a relatively good status of conservation, as do the in-stream habitat conditions and physicochemical features. Besides, most indicators based on macroinvertebrates revealed that both upper and middle basin sections supported similar assemblages, richness, density, and most functional feeding group attributes. Instead, the lower urbanized basin showed increases in conductivity and nutrient values, poor quality in the riparian ecosystem, and habitat condition. According to the multivariate analysis, ammonia level, elevation, current velocity, and habitat conditions had explanatory power on benthos assemblages. Discharge, naturalness of the river channel, flood plain morphology, conservation status, and percent of urban areas were important moderators of plant composition. Finally, although the present land use in the basin would not produce a significant risk of soil erosion, unsustainable practices that promotes the substitution of the forest for shrubs would lead to severe consequences. Mitigation efforts should be directed to protect headwater forest, restore altered riparian ecosystem, and to control the incipient eutrophication process.

Nevada National Security Site Environmental Report 2012 Attachment A: Site Description

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wills, Cathy A

This attachment expands on the general description of the Nevada National Security Site (NNSS) presented in the Introduction to the Nevada National Security Site Environmental Report 2012 (National Security Technologies, LLC [NSTec], 2013). Included are subsections that summarize the site’s geological, hydrological, climatological, and ecological setting and the cultural resources of the NNSS. The subsections are meant to aid the reader in understanding the complex physical and biological environment of the NNSS. An adequate knowledge of the site’s environment is necessary to assess the environmental impacts of new projects, design and implement environmental monitoring activities for current site operations, andmore » assess the impacts of site operations on the public residing in the vicinity of the NNSS. The NNSS environment contributes to several key features of the site that afford protection to the inhabitants of adjacent areas from potential exposure to radioactivity or other contaminants resulting from NNSS operations. These key features include the general remote location of the NNSS, restricted access, extended wind transport times, the great depths to slow-moving groundwater, little or no surface water, and low population density. This attachment complements the annual summary of monitoring program activities and dose assessments presented in the main body of this report.« less

Nevada National Security Site Environmental Report 2013 Attachment A: Site Description

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wills, C.

This attachment expands on the general description of the Nevada National Security Site (NNSS) presented in the Introduction to the Nevada National Security Site Environmental Report 2012 (National Security Technologies, LLC [NSTec], 2013). Included are subsections that summarize the site’s geological, hydrological, climatological, and ecological setting and the cultural resources of the NNSS. The subsections are meant to aid the reader in understanding the complex physical and biological environment of the NNSS. An adequate knowledge of the site’s environment is necessary to assess the environmental impacts of new projects, design and implement environmental monitoring activities for current site operations, andmore » assess the impacts of site operations on the public residing in the vicinity of the NNSS. The NNSS environment contributes to several key features of the site that afford protection to the inhabitants of adjacent areas from potential exposure to radioactivity or other contaminants resulting from NNSS operations. These key features include the general remote location of the NNSS, restricted access, extended wind transport times, the great depths to slow-moving groundwater, little or no surface water, and low population density. This attachment complements the annual summary of monitoring program activities and dose assessments presented in the main body of this report.« less

Soil gas screening for chlorinated solvents at three contaminated karst sites in Tennessee

USGS Publications Warehouse

Wolfe, W.J.; Williams, S.D.

2002-01-01

Soil gas was sampled using active sampling techniques and passive collectors at three sites in Tennessee to evaluate the effectiveness of these techniques for locating chlorinated solvent sources and flowpaths in karst aquifers. Actively collected soil gas samples were analyzed in the field with a portable gas chromatograph, and the passive soil gas collectors were analyzed in the lab with gas chromatography/mass spectrometry. Results of the sampling indicate that the effectiveness of both techniques is highly dependent on the distribution of the contaminants in the subsurface, the geomorphic and hydrogeologic characteristics of the site, and, in one case, on seasonal conditions. Both active and passive techniques identified areas of elevated subsurface chlorinated solvent concentrations at a landfill site where contamination remains concentrated in the regolith. Neither technique detected chlorinated solvents known to be moving in the bedrock at a manufacturing site characterized by thick regolith and an absence of surficial karst features. Passive soil gas sampling had varied success detecting flowpaths for chloroform in the bedrock at a train derailment site characterized by shallow regolith and abundant surficial karst features. At the train derailment site, delineation of the contaminant flowpath through passive soil gas sampling was stronger and more detailed under Winter conditions than summer.

Mojo Hand, a TALEN design tool for genome editing applications.

PubMed

Neff, Kevin L; Argue, David P; Ma, Alvin C; Lee, Han B; Clark, Karl J; Ekker, Stephen C

2013-01-16

Recent studies of transcription activator-like (TAL) effector domains fused to nucleases (TALENs) demonstrate enormous potential for genome editing. Effective design of TALENs requires a combination of selecting appropriate genetic features, finding pairs of binding sites based on a consensus sequence, and, in some cases, identifying endogenous restriction sites for downstream molecular genetic applications. We present the web-based program Mojo Hand for designing TAL and TALEN constructs for genome editing applications (http://www.talendesign.org). We describe the algorithm and its implementation. The features of Mojo Hand include (1) automatic download of genomic data from the National Center for Biotechnology Information, (2) analysis of any DNA sequence to reveal pairs of binding sites based on a user-defined template, (3) selection of restriction-enzyme recognition sites in the spacer between the TAL monomer binding sites including options for the selection of restriction enzyme suppliers, and (4) output files designed for subsequent TALEN construction using the Golden Gate assembly method. Mojo Hand enables the rapid identification of TAL binding sites for use in TALEN design. The assembly of TALEN constructs, is also simplified by using the TAL-site prediction program in conjunction with a spreadsheet management aid of reagent concentrations and TALEN formulation. Mojo Hand enables scientists to more rapidly deploy TALENs for genome editing applications.

Double-u double-u double-u dot APIC dot org: a review of the APIC World Wide Web site.

PubMed

Harr, J

1996-12-01

The widespread use of the Internet and the development of the World Wide Web have led to a revolution in electronic communication and information access. The Association for Professional in Infection Control and Epidemiology (APIC) has developed a site on the World Wide Web to provide mechanisms for international on-line information access and exchange on issues related to the practice of infection control and the application of epidemiology. From the home page of the APIC Web site, users can access information on professional resources, publications, educational offering, governmental affairs, the APIC organization, and the infection control profession. Among the chief features of the site is a discussion forum for posing questions and sharing information about infection control and epidemiology. The site also contains a searchable database of practice-related abstracts and descriptions and order forms for APIC publications. Users will find continuing education course descriptions and registration forms, legislative and regulatory action alerts and a congressional mailer, chapter and committee information, and infection control information of interest to the general public. APIC is considering several potential future enhancements to their Web site and will continue to review the site's content and features to provide current and useful information to infection control professionals.

Malignant melanoma of sun-protected sites: a review of clinical, histological, and molecular features.

PubMed

Merkel, Emily A; Gerami, Pedram

2017-06-01

In most cases of cutaneous melanoma, ultraviolet (UV) radiation is recognized as a prominent risk factor. Less is known regarding the mechanisms of mutagenesis for melanoma arising in sun-protected sites, such as acral and mucosal melanoma. Acral and mucosal melanoma share many common features, including a late age of onset, a broad radial growth phase with prominent lentiginous growth, the presence of field cancerization cells, and, in most cases, lack of a precursor nevus. In addition to early chromosomal instability, many of the same genes are also involved in these two distinct melanoma subtypes. To better understand non-UV-mediated pathogenesis in melanoma, we conducted a joint literature review of clinical, histological, and molecular features in acral and mucosal melanoma. We also reviewed the current literature regarding aberrations in KIT, PDGFRA, TERT, and other commonly involved genes. By comparing common features of these two subtypes, we suggest potential mechanisms underlying acral and/or mucosal melanoma and offer direction for future investigations.

13 CFR 109.510 - On-site and off-site reviews.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 13 Business Credit and Assistance 1 2013-01-01 2013-01-01 false On-site and off-site reviews. 109.510 Section 109.510 Business Credit and Assistance SMALL BUSINESS ADMINISTRATION INTERMEDIARY LENDING PILOT PROGRAM Oversight § 109.510 On-site and off-site reviews. (a) General. SBA may conduct off-site...

How Are Ocular Signs and Symptoms of Dry Eye Associated With Depression in Women With and Without Sjögren Syndrome?

PubMed

Gonzales, John A; Chou, Annie; Rose-Nussbaumer, Jennifer R; Bunya, Vatinee Y; Criswell, Lindsey A; Shiboski, Caroline H; Lietman, Thomas M

2018-07-01

To determine whether ocular phenotypic features of keratoconjunctivitis sicca (KCS) and/or participant-reported symptoms of dry eye disease are associated with depression in women participants enrolled in the Sjögren's International Collaborative Clinical Alliance (SICCA). Cross-sectional study. Women enrolled in the SICCA registry from 9 international research sites. Participants met at least 1 of 5 inclusion criteria for registry enrollment (including complaints of dry eyes or dry mouth, a previous diagnosis of Sjögren syndrome (SS), abnormal serology (positive anti-Sjögren syndrome antigen A and/or B [anti-SSA and/or anti-SSB]), or elevated antinuclear antibody and rheumatoid factor), bilateral parotid gland enlargement, or multiple dental caries). At baseline, participants had oral, ocular, and rheumatologic examination; blood and saliva collection; and a labial salivary gland biopsy (LSGB). They also completed an interview and questionnaires including assessment of depression with the Patient Health Questionnaire 9 (PHQ-9). Univariate logistic regression was used to assess the association between depression and demographic characteristics, participant-reported health, phenotypic features of Sjögren syndrome, and participant-reported symptoms. Mixed-effects modeling was performed to determine if phenotypic features of KCS and/or participant-reported symptoms of dry eye disease were associated with depression, controlling for health, age, country or residence, and sex and allowing for nonindependence within geographic site. Dry eye complaints produced a 1.82-fold (95% confidence interval [CI] 1.38-2.40) higher odds of having depression compared to being symptom-free (P < .001). Additionally, complaints of specific ocular sensations were associated with a higher odds of depression including burning sensation (odds ratio 2.25, 95% CI 1.87-2.72, P < .001) compared to those without complaints. In both women with and without SS, the presence of symptoms of dry eyes and/or dry mouth rather than SS itself resulted in higher odds of depression. One particular ocular phenotypic feature of SS, a positive ocular staining score, was inversely correlated with depression. Participant-reported eye symptoms, particularly specific ocular sensations such as burning, were found to be positively associated with individual American College of Rheumatology/EUropean League Against Rheumatism (ACR/EULAR) SS criteria items. Copyright © 2018 Elsevier Inc. All rights reserved.

JCE Feature Columns

NASA Astrophysics Data System (ADS)

Holmes, Jon L.

1999-05-01

The Features area of JCE Online is now readily accessible through a single click from our home page. In the Features area each column is linked to its own home page. These column home pages also have links to them from the online Journal Table of Contents pages or from any article published as part of that feature column. Using these links you can easily find abstracts of additional articles that are related by topic. Of course, JCE Online+ subscribers are then just one click away from the entire article. Finding related articles is easy because each feature column "site" contains links to the online abstracts of all the articles that have appeared in the column. In addition, you can find the mission statement for the column and the email link to the column editor that I mentioned above. At the discretion of its editor, a feature column site may contain additional resources. As an example, the Chemical Information Instructor column edited by Arleen Somerville will have a periodically updated bibliography of resources for teaching and using chemical information. Due to the increase in the number of these resources available on the WWW, it only makes sense to publish this information online so that you can get to these resources with a simple click of the mouse. We expect that there will soon be additional information and resources at several other feature column sites. Following in the footsteps of the Chemical Information Instructor, up-to-date bibliographies and links to related online resources can be made available. We hope to extend the online component of our feature columns with moderated online discussion forums. If you have a suggestion for an online resource you would like to see included, let the feature editor or JCE Online (jceonline@chem.wisc.edu) know about it. JCE Internet Features JCE Internet also has several feature columns: Chemical Education Resource Shelf, Conceptual Questions and Challenge Problems, Equipment Buyers Guide, Hal's Picks, Mathcad in the Chemistry Curriculum, and WWW Site Review. These columns differ from the print feature columns in that they use the Internet as the publication medium. Doing so allows these features to include continually updated information, digital components, and links to other online resources. The Conceptual Questions and Challenge Problems feature of JCE Internet serves as a good example for the kinds of resources that you can expect to find in an online feature column. Like other columns it contains a mission statement that defines the role of the column. It includes a digital library of continually updated examples of conceptual questions and challenge problems. (As I write this we have just added several new questions to the library.) It also includes a list of links to related online resources, information for authors about how to write questions and problems, and information for teachers about how to use conceptual questions and challenge problems. Teaching with Technology home page at JCE Online. One-Stop Feature Shop The updated Feature area of JCE Online offers information about all JCE feature columns in one place. It gives you a quick and convenient way to access a group of articles in a particular subject area. It provides authors and readers with a good definition of the column and its mission. It complements the print feature columns with online resources. It provides up-to-date bibliographies for selected areas of interest. And last, but not least, it provides that email address you can use to send that message of appreciation to the feature editor for his or her contribution to JCE and the chemical education community.

Monthly energy review, December 1991. [Contains glossary

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1991-12-23

This publication contains data and informative feature articles pertaining to various energy sources. The following topics are discussed: Section 1. energy overview; section 2. energy consumption; Section 3. petroleum; Section 4. natural gas; Section 5. Oil and gas resource development; Section 6. Coal; Section 7. electricity; Section 8. nuclear energy; Section 9. energy prices and Section 10. international energy. Appendix conversion factors a glossary is included. 57 tabs.,

Caught on the Web

ERIC Educational Resources Information Center

Isakson, Carol

2005-01-01

In this article, the author presents several Web sites supporting electronic presentation skills. The sites featured here will help fine-tune one's skills in modeling effective presentations and provide suggestions for managing student presentations meeting National Educational Technology Standards (NETS). Most use PowerPoint, the current industry…

10 CFR 60.122 - Siting criteria.

Code of Federal Regulations, 2011 CFR

2011-01-01

... Period. (12) Earthquakes which have occurred historically that if they were to be repeated could affect the site significantly. (13) Indications, based on correlations of earthquakes with tectonic processes and features, that either the frequency of occurrence or magnitude of earthquakes may increase. (14...

10 CFR 60.122 - Siting criteria.

Code of Federal Regulations, 2014 CFR

2014-01-01

... Period. (12) Earthquakes which have occurred historically that if they were to be repeated could affect the site significantly. (13) Indications, based on correlations of earthquakes with tectonic processes and features, that either the frequency of occurrence or magnitude of earthquakes may increase. (14...

10 CFR 60.122 - Siting criteria.

Code of Federal Regulations, 2012 CFR

2012-01-01

... Period. (12) Earthquakes which have occurred historically that if they were to be repeated could affect the site significantly. (13) Indications, based on correlations of earthquakes with tectonic processes and features, that either the frequency of occurrence or magnitude of earthquakes may increase. (14...

10 CFR 60.122 - Siting criteria.

Code of Federal Regulations, 2013 CFR

2013-01-01

... Period. (12) Earthquakes which have occurred historically that if they were to be repeated could affect the site significantly. (13) Indications, based on correlations of earthquakes with tectonic processes and features, that either the frequency of occurrence or magnitude of earthquakes may increase. (14...

10 CFR 960.3-2 - Siting process.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 10 Energy 4 2012-01-01 2012-01-01 false Siting process. 960.3-2 Section 960.3-2 Energy DEPARTMENT OF ENERGY GENERAL GUIDELINES FOR THE PRELIMINARY SCREENING OF POTENTIAL SITES FOR A NUCLEAR WASTE REPOSITORY Implementation Guidelines § 960.3-2 Siting process. The siting process begins with site screening...

10 CFR 960.3-2 - Siting process.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 10 Energy 4 2011-01-01 2011-01-01 false Siting process. 960.3-2 Section 960.3-2 Energy DEPARTMENT OF ENERGY GENERAL GUIDELINES FOR THE PRELIMINARY SCREENING OF POTENTIAL SITES FOR A NUCLEAR WASTE REPOSITORY Implementation Guidelines § 960.3-2 Siting process. The siting process begins with site screening...

10 CFR 960.3-2 - Siting process.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 10 Energy 4 2013-01-01 2013-01-01 false Siting process. 960.3-2 Section 960.3-2 Energy DEPARTMENT OF ENERGY GENERAL GUIDELINES FOR THE PRELIMINARY SCREENING OF POTENTIAL SITES FOR A NUCLEAR WASTE REPOSITORY Implementation Guidelines § 960.3-2 Siting process. The siting process begins with site screening...

10 CFR 960.3-2 - Siting process.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 10 Energy 4 2014-01-01 2014-01-01 false Siting process. 960.3-2 Section 960.3-2 Energy DEPARTMENT OF ENERGY GENERAL GUIDELINES FOR THE PRELIMINARY SCREENING OF POTENTIAL SITES FOR A NUCLEAR WASTE REPOSITORY Implementation Guidelines § 960.3-2 Siting process. The siting process begins with site screening...

9 CFR 149.7 - Recordkeeping at site.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 9 Animals and Animal Products 1 2013-01-01 2013-01-01 false Recordkeeping at site. 149.7 Section... AGRICULTURE LIVESTOCK IMPROVEMENT VOLUNTARY TRICHINAE CERTIFICATION PROGRAM § 149.7 Recordkeeping at site. (a) Stage I enrolled sites, Stage II or Stage III certified sites, and any site that has been suspended or...

9 CFR 149.7 - Recordkeeping at site.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 9 Animals and Animal Products 1 2012-01-01 2012-01-01 false Recordkeeping at site. 149.7 Section... AGRICULTURE LIVESTOCK IMPROVEMENT VOLUNTARY TRICHINAE CERTIFICATION PROGRAM § 149.7 Recordkeeping at site. (a) Stage I enrolled sites, Stage II or Stage III certified sites, and any site that has been suspended or...

9 CFR 149.7 - Recordkeeping at site.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 9 Animals and Animal Products 1 2014-01-01 2014-01-01 false Recordkeeping at site. 149.7 Section... AGRICULTURE LIVESTOCK IMPROVEMENT VOLUNTARY TRICHINAE CERTIFICATION PROGRAM § 149.7 Recordkeeping at site. (a) Stage I enrolled sites, Stage II or Stage III certified sites, and any site that has been suspended or...

Efficient green luminescence of terbium oxalate crystals: A case study with Judd-Ofelt theory and single crystal structure analysis and the effect of dehydration on luminescence

NASA Astrophysics Data System (ADS)

Alexander, Dinu; Joy, Monu; Thomas, Kukku; Sisira, S.; Biju, P. R.; Unnikrishnan, N. V.; Sudarsanakumar, C.; Ittyachen, M. A.; Joseph, Cyriac

2018-06-01

Design and synthesis of Lanthanide based metal organic framework is a frontier area of research owing to their structural diversity enabling specific applications. The luminescence properties of rare earths, tuned by the structural features of Ln-MOFs are investigated extensively. Rare earth oxalates which can be synthesized in a facile method, ensuring the structural features of MOFs with excellent photoluminescence characteristics deserves much attention. This work is the first time report on the single crystal structure and Judd-Ofelt (JO) theoretical analysis - their correlation with the intense and sharp green luminescence of Terbium oxalate crystals. The intense green luminescence observed for Terbium oxalate crystals for a wide range of excitation from DUV to visible region despite the luminescence limiting factors are discussed. The absence of concentration quenching and lifting up of forbidden nature of f-f transitions, allowing direct excitation of Terbium ions is analysed with the help of JO theory and single crystal structure analysis. The JO analysis predicted the asymmetry of Terbium sites, allowing the electric dipole transitions and from the JO intensity parameters, promising spectroscopic parameters - emission cross section, branching ratio, gain band width and gain coefficient of the material were calculated. The single crystal structure analysis revealed the asymmetry of Tb sites and structure of Terbium oxalate is formed by the hydrogen bonded stacking of overlapped six Terbium membered rings connected by the oxalate ligands. The molecularly thick layers thus formed on the crystal surface are imaged by the atomic force microscopy. The presence of water channels in the structure and the effect of lattice water molecules on the luminescence intensity are also investigated.

Deformation of ``Villafranchian'' lacustrine sediments in the Chisone Valley (Western Alps, Italy)

NASA Astrophysics Data System (ADS)

Collo, Giovanni; Giardino, Marco

1997-09-01

The Chisone Valley is located in the internal NW Alps, in the Pinerolese District, an area characterized by present low to medium seismicity. Fine-grained sediments (sand, silt and clay with interbedded gravel) crop out in the lower Chisone Valley: they were first interpreted as glaciolacustrine deposits, and then as a lacustrine infilling of the valley floor probably due to differential uplifting of the valley mouth. Review of this data, together with new field and palynological observations, lead us to refer the lacustrine deposits to approximately the Lower Pleistocene (Villafranchian). In many outcrops, the lacustrine deposits show strong soft-sediment deformation such as convolute laminations, water-escape structures and disrupted beds, some of them associated with folds and faults (cm to dm in size); only two sites show metric to decametric folds and faults trending E-W and N-S. Detailed structural analysis conducted along a recently exposed section (Rio Gran Dubbione site) shows several soft-sediment deformation features on the limbs of mesoscale folds. Because of their intimate structural association, the origin of these minor structures seems to be connected to synsedimentary activity on reverse and normal faults (m to dm in size) affecting the lacustrine deposits in the same locality. Soft-sediment deformation features can be interpreted as possible paleoseismites. If so, the present seismicity of the Pinerolese District, which is the major area of such activity in NW Italy, cannot be considered an isolated episode in the geological evolution of the region; even if there is no supporting evidence for continuous seismicity, the deformations in the lacustrine sediments of the Chisone Valley testify to Early Pleistocene seismic activity, probably related to the recent tectonic evolution of the internal side of the NW Alps.

Specific features of modern multifunctional high-rise building construction

NASA Astrophysics Data System (ADS)

Manukhina, Lyubov; Samosudova, Natal'ja

2018-03-01

The article analyzes the main reasons for the development of high-rise building construction the most important of which-is a limitation of the urban areas and, consequently, the high price of land reserved for construction. New engineering and compositional solutions for the creation of new types of buildings are considered - complex technical designs of a large number of storeys completely meet the new requirements for safety and comfort. Some peculiarities of designing high-rise buildings and searching for optimal architectural and planning solutions are revealed since, with external architectural simplicity, high-rise buildings have complex structural and technological and space-planning solutions. We consider the specific features of a high-rise housing in various countries around the world, including Russia, such as the layout of the multi-storey residential buildings, depending on the climatic characteristics of the regions, assessment of the geological risk of the construction site, the choice of parameters and functional purpose of the sections of the territory of high-rise construction, location of the town-planning object for substantiating the overall dimensions of the building, assessment of changes aeration and engineering and hydrological conditions of the site. A special place in the article on the problems of improvement of the territory, the device of courtyards, landscaping, the device of playing and sports grounds. The main conclusion in the article is the following problem - when developing high-rise housing construction, the development of high-rise housing, and an increase in the population density in the territory of large cities of Russia, necessary to create a comfortable and safe level of residents living and not a decrease, but an improvement in the quality of the urban environment.

Boca de Potrerillos

NASA Astrophysics Data System (ADS)

Murray, William Breen

Boca de Potrerillos is an archaeological site located in the municipio of Mina, Nuevo León, about 60 km. northwest of Monterrey, Mexicós third largest city. Its principal feature is one of the largest concentrations of petroglyphs in the country. Archaeoastronomical features include petroglyphic markers of the cardinal directions, dot configurations which count lunar synodic periods, and one of the earliest horizon calendars in North America. They indicate that the site was probably used for sky observation from the Middle Archaic time period onward and may represent evidence of the initial stages in the development of Mesoamerican numeration and astronomy.

A Determination of Eligibility to the National Register of Historic Places for Select Historic Properties Along the Souris River in North Dakota

DTIC Science & Technology

1989-08-01

Company Historic District," 1985. "Historic Resources of Hardin, Montana," :984. "Silver Bow Brewery Malt House," 1982. "Silver Bow County Poor Farm...34i QQL-- Q ..i FEATURE TYPE CULTURAL MATERIAL ’iii Site Type -0,- Cm Scatter , , Bone 0 Chimney %.Z Ceramics tA Context .Q, Depression 1 Charcoal i...Sec , QQQ i, QQ . Q, ,LTL, L- Twp R ,.. , Sec ,., QQO 1- QQ’ L- Q’ ’ FEATURE TYPE CULTURAL MATERIAL &. Site Type m, Cm Scatter ,.Z, Bone Chimney

Lidar observations of wind- and wave-driven morphological evolution of coastal foredunes

NASA Astrophysics Data System (ADS)

Spore, N.; Brodie, K. L.; Kershner, C. M.

2016-02-01

Coastal foredunes are continually evolving geomorphic features that are slowly built up by wind-blown sand and rapidly eroded during storms by large waves and swash. Landward aeolian transport removes sediment from the active beach and surf-zone, trapping it in the dune, where as coastal erosion both removes sediment from the dune and can decrease the overall fetch and sediment supply available to the dune. Understanding how wave and wind-driven process interact with each other and the dune-beach system itself is a critical component of improving predictions of coastal evolution. To investigate these processes, two 50 m alongshore by 25 m cross-shore patches of dune along an open coast beach fronting the Atlantic Ocean in Duck, NC were scanned with a high resolution terrestrial lidar scanner ( 5000 points per m^2) every three weeks over the last year to observe detailed morphological evolution of the dune and upper beach. Sequential scans were co-registered to each other using fixed objects in the field of view, significantly increasing precision and accuracy of the observations. The north study site featured a 7.5 m tall scarped foredune system, where as the southern study site featured a 6 m tall, hummocky, prograding foredune. Initial analyses show large accretion events on the southern prograding site. For example, during one three week period in February, portions of the site accreted over 40 cm. In contrast, during the same three week period at the northern site (less than 1 km away), response was alongshore variable with erosion and accretion of roughly 10 cm on the foredune face. Further analysis will focus on separating wind vs. wave driven evolution of these sites. Funded by the USACE Coastal Inlets Research Program.

Intein-mediated site-specific synthesis of tumor-targeting protein delivery system: Turning PEG dilemma into prodrug-like feature

PubMed Central

Chen, Yingzhi; Zhang, Meng; Jin, Hongyue; Tang, Yisi; Wang, Huiyuan; Xu, Qin; Li, Yaping; Li, Feng; Huang, Yongzhuo

2017-01-01

Poor tumor-targeted and cytoplasmic delivery is a bottleneck for protein toxin-based cancer therapy. Ideally, a protein toxin drug should remain stealthy in circulation for prolonged half-life and reduced side toxicity, but turn activated at tumor. PEGylation is a solution to achieve the first goal, but creates a hurdle for the second because PEG rejects interaction between the drugs and tumor cells therein. Such PEG dilemma is an unsolved problem in protein delivery. Herein proposed is a concept of turning PEG dilemma into prodrug-like feature. A site-selectively PEGylated, gelatinase-triggered cell-penetrating trichosanthin protein delivery system is developed with three specific aims. The first is to develop an intein-based ligation method for achieving site-specific modification of protein toxins. The second is to develop a prodrug feature that renders protein toxins remaining stealthy in blood for reduced side toxicity and improved EPR effect. The third is to develop a gelatinase activatable cell-penetration strategy for enhanced tumor targeting and cytoplasmic delivery. Of note, site-specific modification is a big challenge in protein drug research, especially for such a complicated, multifunctional protein delivery system. We successfully develop a protocol for constructing a macromolecular prodrug system with intein-mediated ligation synthesis. With an on-column process of purification and intein-mediated cleavage, the site-specific PEGylation then can be readily achieved by conjugation with the activated C-terminus, thus constructing a PEG-capped, cell-penetrating trichosanthin system with a gelatinase-cleavable linker that enables tumor-specific activation of cytoplasmic delivery. It provides a promising method to address the PEG dilemma for enhanced protein drug delivery, and importantly, a facile protocol for site-specific modification of such a class of protein drugs for improving their druggability and industrial translation. PMID:27914267

Engineering geologic and geotechnical analysis of paleoseismic shaking using liquefaction effects: Field examples

USGS Publications Warehouse

Green, R.A.; Obermeier, S.F.; Olson, S.M.

2005-01-01

The greatest impediments to the widespread acceptance of back-calculated ground motion characteristics from paleoliquefaction studies typically stem from three uncertainties: (1) the significance of changes in the geotechnical properties of post-liquefied sediments (e.g., "aging" and density changes), (2) the selection of appropriate geotechnical soil indices from individual paleoliquefaction sites, and (3) the methodology for integration of back-calculated results of strength of shaking from individual paleoliquefaction sites into a regional assessment of paleoseismic strength of shaking. Presented herein are two case studies that illustrate the methods outlined by Olson et al. [Engineering Geology, this issue] for addressing these uncertainties. The first case study is for a site near Memphis, Tennessee, wherein cone penetration test data from side-by-side locations, one of liquefaction and the other of no liquefaction, are used to readily discern that the influence of post-liquefaction "aging" and density changes on the measured in situ soil indices is minimal. In the second case study, 12 sites that are at scattered locations in the Wabash Valley and that exhibit paleoliquefaction features are analyzed. The features are first provisionally attributed to the Vincennes Earthquake, which occurred around 6100 years BP, and are used to illustrate our proposed approach for selecting representative soil indices of the liquefied sediments. These indices are used in back-calculating the strength of shaking at the individual sites, the results from which are then incorporated into a regional assessment of the moment magnitude, M, of the Vincennes Earthquake. The regional assessment validated the provisional assumption that the paleoliquefaction features at the scattered sites were induced by the Vincennes Earthquake, in the main, which was determined to have M ??? 7.5. The uncertainties and assumptions used in the assessment are discussed in detail. ?? 2004 Elsevier B.V. All rights reserved.

Magnetic resonance imaging features of Great Danes with and without clinical signs of cervical spondylomyelopathy

PubMed Central

Martin-Vaquero, Paula; da Costa, Ronaldo C.

2014-01-01

Objective To characterize and compare the MRI morphological features of the cervical vertebral column of Great Danes with and without clinical signs of cervical spondylomyelopathy (CSM). Design Prospective cohort study. Animals 30 Great Danes (15 clinically normal and 15 CSM-affected). Procedures All dogs underwent MRI of the cervical vertebral column (C2–3 through T1–2). Features evaluated included sites of subarachnoid space compression, spinal cord compression, or both; degree, cause, and direction of compression; MRI signal changes of the spinal cord; articular process (facet) joint characteristics; internal vertebral venous plexus visibility; and presence of extradural synovial cysts as well as presence and degree of intervertebral disk degeneration and foraminal stenosis. Results Clinically normal and CSM-affected dogs had 11 and 61 compressive sites, respectively, detected with MRI. All CSM-affected dogs had ≥ 1 site of spinal cord compression. No signal changes were observed in spinal cords of normal dogs, whereas 14 sites of hyperintensity were found in 9 CSM-affected dogs. Foraminal stenosis was present in 11 clinically normal and all CSM-affected dogs. The number of stenotic foraminal sites was significantly greater in the CSM-affected group, and severe stenosis appeared to be more common in this group than in the clinically normal group. Significant differences were identified between clinically normal and CSM-affected dogs with regard to amount of synovial fluid evident, regularity of articular surfaces, degree of articular process joint proliferation, and internal vertebral venous plexus visibility. Conclusions and Clinical Relevance Abnormalities were detected with MRI in several clinically normal Great Danes. Severe spinal cord compression, number of stenotic foraminal sites, and signal changes within the spinal cord distinguished CSM-affected from clinically normal Great Danes. PMID:25075822

Magnetic resonance imaging features of Great Danes with and without clinical signs of cervical spondylomyelopathy.

PubMed

Martin-Vaquero, Paula; da Costa, Ronaldo C

2014-08-15

To characterize and compare the MRI morphological features of the cervical vertebral column of Great Danes with and without clinical signs of cervical spondylomyelopathy (CSM). Prospective cohort study. 30 Great Danes (15 clinically normal and 15 CSM-affected). All dogs underwent MRI of the cervical vertebral column (C2-3 through T1-2). Features evaluated included sites of subarachnoid space compression, spinal cord compression, or both; degree, cause, and direction of compression; MRI signal changes of the spinal cord; articular process (facet) joint characteristics; internal vertebral venous plexus visibility; and presence of extradural synovial cysts as well as presence and degree of intervertebral disk degeneration and foraminal stenosis. Clinically normal and CSM-affected dogs had 11 and 61 compressive sites, respectively, detected with MRI. All CSM-affected dogs had ≥ 1 site of spinal cord compression. No signal changes were observed in spinal cords of normal dogs, whereas 14 sites of hyperintensity were found in 9 CSM-affected dogs. Foraminal stenosis was present in 11 clinically normal and all CSM-affected dogs. The number of stenotic foraminal sites was significantly greater in the CSM-affected group, and severe stenosis appeared to be more common in this group than in the clinically normal group. Significant differences were identified between clinically normal and CSM-affected dogs with regard to amount of synovial fluid evident, regularity of articular surfaces, degree of articular process joint proliferation, and internal vertebral venous plexus visibility. Abnormalities were detected with MRI in several clinically normal Great Danes. Severe spinal cord compression, number of stenotic foraminal sites, and signal changes within the spinal cord distinguished CSM-affected from clinically normal Great Danes.

Design and Multicentric Implementation of a Generic Software Architecture for Patient Recruitment Systems Re-Using Existing HIS Tools and Routine Patient Data

PubMed Central

Trinczek, B.; Köpcke, F.; Leusch, T.; Majeed, R.W.; Schreiweis, B.; Wenk, J.; Bergh, B.; Ohmann, C.; Röhrig, R.; Prokosch, H.U.; Dugas, M.

2014-01-01

Summary Objective (1) To define features and data items of a Patient Recruitment System (PRS); (2) to design a generic software architecture of such a system covering the requirements; (3) to identify implementation options available within different Hospital Information System (HIS) environments; (4) to implement five PRS following the architecture and utilizing the implementation options as proof of concept. Methods Existing PRS were reviewed and interviews with users and developers conducted. All reported PRS features were collected and prioritized according to their published success and user’s request. Common feature sets were combined into software modules of a generic software architecture. Data items to process and transfer were identified for each of the modules. Each site collected implementation options available within their respective HIS environment for each module, provided a prototypical implementation based on available implementation possibilities and supported the patient recruitment of a clinical trial as a proof of concept. Results 24 commonly reported and requested features of a PRS were identified, 13 of them prioritized as being mandatory. A UML version 2 based software architecture containing 5 software modules covering these features was developed. 13 data item groups processed by the modules, thus required to be available electronically, have been identified. Several implementation options could be identified for each module, most of them being available at multiple sites. Utilizing available tools, a PRS could be implemented in each of the five participating German university hospitals. Conclusion A set of required features and data items of a PRS has been described for the first time. The software architecture covers all features in a clear, well-defined way. The variety of implementation options and the prototypes show that it is possible to implement the given architecture in different HIS environments, thus enabling more sites to successfully support patient recruitment in clinical trials. PMID:24734138

Design and multicentric implementation of a generic software architecture for patient recruitment systems re-using existing HIS tools and routine patient data.

PubMed

Trinczek, B; Köpcke, F; Leusch, T; Majeed, R W; Schreiweis, B; Wenk, J; Bergh, B; Ohmann, C; Röhrig, R; Prokosch, H U; Dugas, M

2014-01-01

(1) To define features and data items of a Patient Recruitment System (PRS); (2) to design a generic software architecture of such a system covering the requirements; (3) to identify implementation options available within different Hospital Information System (HIS) environments; (4) to implement five PRS following the architecture and utilizing the implementation options as proof of concept. Existing PRS were reviewed and interviews with users and developers conducted. All reported PRS features were collected and prioritized according to their published success and user's request. Common feature sets were combined into software modules of a generic software architecture. Data items to process and transfer were identified for each of the modules. Each site collected implementation options available within their respective HIS environment for each module, provided a prototypical implementation based on available implementation possibilities and supported the patient recruitment of a clinical trial as a proof of concept. 24 commonly reported and requested features of a PRS were identified, 13 of them prioritized as being mandatory. A UML version 2 based software architecture containing 5 software modules covering these features was developed. 13 data item groups processed by the modules, thus required to be available electronically, have been identified. Several implementation options could be identified for each module, most of them being available at multiple sites. Utilizing available tools, a PRS could be implemented in each of the five participating German university hospitals. A set of required features and data items of a PRS has been described for the first time. The software architecture covers all features in a clear, well-defined way. The variety of implementation options and the prototypes show that it is possible to implement the given architecture in different HIS environments, thus enabling more sites to successfully support patient recruitment in clinical trials.

Earthquake ground motion: Chapter 3

USGS Publications Warehouse

Luco, Nicolas; Kircher, Charles A.; Crouse, C. B.; Charney, Finley; Haselton, Curt B.; Baker, Jack W.; Zimmerman, Reid; Hooper, John D.; McVitty, William; Taylor, Andy

2016-01-01

Most of the effort in seismic design of buildings and other structures is focused on structural design. This chapter addresses another key aspect of the design process—characterization of earthquake ground motion into parameters for use in design. Section 3.1 describes the basis of the earthquake ground motion maps in the Provisions and in ASCE 7 (the Standard). Section 3.2 has examples for the determination of ground motion parameters and spectra for use in design. Section 3.3 describes site-specific ground motion requirements and provides example site-specific design and MCER response spectra and example values of site-specific ground motion parameters. Section 3.4 discusses and provides an example for the selection and scaling of ground motion records for use in various types of response history analysis permitted in the Standard.

Evaluation of Terrestrial LIDAR for Monitoring Geomorphic Change at Archeological Sites in Grand Canyon National Park, Arizona

USGS Publications Warehouse

Collins, Brian D.; Brown, Kristin M.; Fairley, Helen C.

2008-01-01

This report presents the results of an evaluation of terrestrial light detection and ranging (LIDAR) for monitoring geomorphic change at archeological sites located within Grand Canyon National Park, Ariz. Traditionally, topographic change-detection studies have used total station methods for the collection of data related to key measurable features of site erosion such as the location of thalwegs and knickpoints of gullies that traverse archeological sites (for example, Pederson and others, 2003). Total station methods require survey teams to walk within and on the features of interest within the archeological sites to take accurate measurements. As a result, site impacts may develop such as trailing, damage to cryptogamic crusts, and surface compaction that can exacerbate future erosion of the sites. National Park Service (NPS) resource managers have become increasingly concerned that repeated surveys for research and monitoring purposes may have a detrimental impact on the resources that researchers are trying to study and protect. Beginning in 2006, the Sociocultural Program of the U.S. Geological Survey's (USGS) Grand Canyon Monitoring and Research Center (GCMRC) initiated an evaluation of terrestrial LIDAR as a new monitoring tool that might enhance data quality and reduce site impacts. This evaluation was conducted as one part of an ongoing study to develop objective, replicable, quantifiable monitoring protocols for tracking the status and trend of variables affecting archeological site condition along the Colorado River corridor. The overall study consists of two elements: (1) an evaluation of the methodology through direct comparison to geomorphologic metrics already being collected by total station methods (this report) and (2) an evaluation of terrestrial LIDAR's ability to detect topographic change through the collection of temporally different datasets (a report on this portion of the study is anticipated early in 2009). The main goals of the first element of study were to 1. test the methodology and survey protocols of terrestrial LIDAR surveying under actual archeological site field conditions, 2. examine the ability to collect topographic data of entire archeological sites given such constraints as vegetation and rough topography, and 3. evaluate the ability of terrestrial LIDAR to accurately map the locations of key geomorphic features already being collected by total station methods such as gully thalweg and knickpoint locations. This report focuses on the ability of terrestrial LIDAR to duplicate total station methods, including typical erosion-related change features such as the plan view gully thalweg location and the gully thalweg long profile. The report also presents information concerning the use of terrestrial LIDAR for archeological site monitoring in a general sense. In addition, a detailed comparison of the site impacts caused by both total station and terrestrial LIDAR survey methods is presented using a suite of indicators, including total field survey time, field footstep count, and data-processing time. A thorough discussion of the relative benefits and limitations of using terrestrial LIDAR for monitoring erosion-induced changes at archeological sites in Grand Canyon National Park concludes this report.

Multi-Site Diagnostic Classification of Schizophrenia Using Discriminant Deep Learning with Functional Connectivity MRI.

PubMed

Zeng, Ling-Li; Wang, Huaning; Hu, Panpan; Yang, Bo; Pu, Weidan; Shen, Hui; Chen, Xingui; Liu, Zhening; Yin, Hong; Tan, Qingrong; Wang, Kai; Hu, Dewen

2018-04-01

A lack of a sufficiently large sample at single sites causes poor generalizability in automatic diagnosis classification of heterogeneous psychiatric disorders such as schizophrenia based on brain imaging scans. Advanced deep learning methods may be capable of learning subtle hidden patterns from high dimensional imaging data, overcome potential site-related variation, and achieve reproducible cross-site classification. However, deep learning-based cross-site transfer classification, despite less imaging site-specificity and more generalizability of diagnostic models, has not been investigated in schizophrenia. A large multi-site functional MRI sample (n = 734, including 357 schizophrenic patients from seven imaging resources) was collected, and a deep discriminant autoencoder network, aimed at learning imaging site-shared functional connectivity features, was developed to discriminate schizophrenic individuals from healthy controls. Accuracies of approximately 85·0% and 81·0% were obtained in multi-site pooling classification and leave-site-out transfer classification, respectively. The learned functional connectivity features revealed dysregulation of the cortical-striatal-cerebellar circuit in schizophrenia, and the most discriminating functional connections were primarily located within and across the default, salience, and control networks. The findings imply that dysfunctional integration of the cortical-striatal-cerebellar circuit across the default, salience, and control networks may play an important role in the "disconnectivity" model underlying the pathophysiology of schizophrenia. The proposed discriminant deep learning method may be capable of learning reliable connectome patterns and help in understanding the pathophysiology and achieving accurate prediction of schizophrenia across multiple independent imaging sites. Copyright © 2018 German Center for Neurodegenerative Diseases (DZNE). Published by Elsevier B.V. All rights reserved.

The effect of top-level domains and advertisements on health web-site credibility.

PubMed

Walther, Joseph B; Wang, Zuoming; Loh, Tracy

2004-09-03

Concerns over health information on the Internet have generated efforts to enhance credibility markers; yet how users actually assess the credibility of online health information is largely unknown. This study set out to (1) establish a parsimonious and valid questionnaire instrument to measure credibility of Internet health information by drawing on various previous measures of source, news, and other credibility scales; and (2) to identify the effects of Web-site domains and advertising on credibility perceptions. Respondents (N = 156) examined one of 12 Web-site mock-ups and completed credibility scales in a 3 x 2 x 2 between-subjects experimental design. Factor analysis and validity checks were used for item reduction, and analysis of variance was employed for hypothesis testing of Web-site features' effects. In an attempt to construct a credibility instrument, three dimensions of credibility (safety, trustworthiness, and dynamism) were retained, reflecting traditional credibility sub-themes, but composed of items from disparate sources. When testing the effect of the presence or absence of advertising on a Web site on credibility, we found that this depends on the site's domain, with a trend for advertisements having deleterious effects on the credibility of sites with .org domain, but positive effects on sites with .com or .edu domains. Health-information Web-site providers should select domains purposefully when they can, especially if they must accept on-site advertising. Credibility perceptions may not be invariant or stable, but rather are sensitive to topic and context. Future research may employ these findings in order to compare other forms of health-information delivery to optimal Web-site features.

Children's media culture in the new millennium: mapping the digital landscape.

PubMed

Montgomery, K C

2000-01-01

A new "children's digital media culture" is swiftly moving into place on the Internet. In this article, the author describes the technological, demographic, and market forces shaping this new digital media culture and the rich array of Web sites being created for children and teens. Many nonprofit organizations, museums, educational institutions, and government agencies are playing a significant role in developing online content for children, offering them opportunities to explore the world, form communities with other children, and create their own works of art and literature. For the most part, however, the heavily promoted commercial sites, sponsored mainly by media conglomerates and toy companies, are overshadowing the educational sites. Because of the unique interactive features of the Internet, companies are able to integrate advertising and Web site content to promote "brand awareness" and "brand loyalty" among children, encouraging them to become consumers beginning at a very early age. The possibility that a child's exploration on the Internet might lead to inappropriate content, aggressive advertising, or even dangerous contact with strangers has given rise to a number of efforts to create "safe zones" for children--that is, places in cyberspace where children can be protected from both marketers and predators. Federal legislation now requires parental permission before commercial Web sites can collect personal information from children under age 13. Several companies offer filtering, blocking, and monitoring software to safeguard children from harmful content or predators. Generally lacking in debates concerning children's use of the Internet, however, is a more proactive definition of quality--one that would help ensure the creation and maintenance of Web sites that enhance children's learning and development and not merely keep them from harm. In the concluding section of this article, the author recommends actions to promote development of a quality media culture that would help children become good citizens as well as responsible consumers.

Kinesiology taping and the world wide web: a quality and content analysis of internet-based information.

PubMed

Beutel, Bryan G; Cardone, Dennis A

2014-10-01

Due to limited regulation of websites, the quality and content of online health-related information has been questioned as prior studies have shown that websites often misrepresent orthopaedic conditions and treatments. Kinesio tape has gained popularity among athletes and the general public despite limited evidence supporting its efficacy. The primary objective of this study was to assess the quality and content of Internet-based information on Kinesio taping. An Internet search using the terms "Kinesio tape" and "kinesiology tape" was performed using the Google search engine. Websites returned within the first two pages of results, as well as hyperlinks embedded within these sites, were included in the study. These sites were subsequently classified by type. The quality of the website was determined by the Health On the Net (HON) score, an objective metric based upon recommendations from the United Nations for the ethical representation of health information. A content analysis was performed by noting specific misleading versus balanced features in each website. A total of 31 unique websites were identified. The majority of the websites (71%) were commercial. Out of a total possible 16 points, the mean HON score among the websites was 8.9 points (SD 2.2 points). The number of misleading features was significantly higher than the balanced features (p < 0.001). Fifty-eight percent of sites used anecdotal testimonials to promote the product. Only small percentages of websites discussed complications, alternatives, or provided accurate medical outcomes. Overall, commercial sites had a greater number of misleading features compared to non-commercial sites (p = 0.01). Websites discussing Kinesio tape are predominantly of poor quality and present misleading, imbalanced information. It is of ever-increasing importance that healthcare providers work to ensure that reliable, balanced, and accurate information be available to Internet users. IV.

Science@NASA: Direct to People!

NASA Technical Reports Server (NTRS)

Koczor, Ronald J.; Adams, Mitzi; Gallagher, Dennis; Whitaker, Ann (Technical Monitor)

2002-01-01

Science@NASA is a science communication effort sponsored by NASA's Marshall Space Flight Center. It is the result of a four year research project between Marshall, the University of Florida College of Journalism and Communications and the internet communications company, Bishop Web Works. The goals of Science@NASA are to inform, inspire, and involve people in the excitement of NASA science by bringing that science directly to them. We stress not only the reporting of the facts of a particular topic, but also the context and importance of the research. Science@NASA involves several levels of activity from academic communications research to production of content for 6 websites, in an integrated process involving all phases of production. A Science Communications Roundtable Process is in place that includes scientists, managers, writers, editors, and Web technical experts. The close connection between the scientists and the writers/editors assures a high level of scientific accuracy in the finished products. The websites each have unique characters and are aimed at different audience segments: 1. http://science.nasa.gov. (SNG) Carries stories featuring various aspects of NASA science activity. The site carries 2 or 3 new stories each week in written and audio formats for science-attentive adults. 2. http://liftoff.msfc.nasa.gov. Features stories from SNG that are recast for a high school level audience. J-Track and J-Pass applets for tracking satellites are our most popular product. 3. http://kids. msfc.nasa.gov. This is the Nursemaids site and is aimed at a middle school audience. The NASAKids Club is a new feature at the site. 4. http://www.thursdaysclassroom.com . This site features lesson plans and classroom activities for educators centered around one of the science stories carried on SNG. 5. http://www.spaceweather.com. This site gives the status of solar activity and its interactions with the Earth's ionosphere and magnetosphere.

Vaginal birth after C-section

MedlinePlus

... gov/ency/patientinstructions/000589.htm Vaginal birth after C-section To use the sharing features on this ... enable JavaScript. If you had a cesarean birth (C-section) before, it does not mean that you ...

Going home after a C-section

MedlinePlus

... ency/patientinstructions/000624.htm Going home after a C-section To use the sharing features on this ... enable JavaScript. You are going home after a C-section. You should expect to need help caring ...

78 FR 56749 - Site Characteristics and Site Parameters for Nuclear Power Plants

Federal Register 2010, 2011, 2012, 2013, 2014

2013-09-13

..., ``Geologic Characterization Information,'' (currently titled as ``Basic Geologic and Seismic Information''); Section 2.5.2, ``Vibratory Ground Motion''; Section 2.5.3, ``Surface Deformation'' (currently titled as... the following methods (unless this document describes a different method for submitting comments on a...

24 CFR 984.204 - On-site facilities.

Code of Federal Regulations, 2010 CFR

2010-04-01

... SECTION 8 AND PUBLIC HOUSING FAMILY SELF-SUFFICIENCY PROGRAM Program Development and Approval Procedures... 24 Housing and Urban Development 4 2010-04-01 2010-04-01 false On-site facilities. 984.204 Section 984.204 Housing and Urban Development Regulations Relating to Housing and Urban Development (Continued...

View of Hudson & Manhattan Tunnel in Section C showing ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

View of Hudson & Manhattan Tunnel in Section C showing one of World Trade Center 2's column bases used to support Hudson & Manhattan Tube across site, looking east. (BH) - World Trade Center Site, Bounded by Vesey, Church, Liberty Streets, & Route 9A, New York County, NY

78 FR 59866 - New Car Assessment Program (NCAP)

Federal Register 2010, 2011, 2012, 2013, 2014

2013-09-30

... because ESC is now required for all light vehicles. For many years, NCAP has provided comparative... site, www.safercar.gov . NCAP provides comparative information on the safety performance and features... Features on www.safercar.gov are designed to assist drivers in avoiding backover crashes. After considering...

Visualization of protein sequence features using JavaScript and SVG with pViz.js.

PubMed

Mukhyala, Kiran; Masselot, Alexandre

2014-12-01

pViz.js is a visualization library for displaying protein sequence features in a Web browser. By simply providing a sequence and the locations of its features, this lightweight, yet versatile, JavaScript library renders an interactive view of the protein features. Interactive exploration of protein sequence features over the Web is a common need in Bioinformatics. Although many Web sites have developed viewers to display these features, their implementations are usually focused on data from a specific source or use case. Some of these viewers can be adapted to fit other use cases but are not designed to be reusable. pViz makes it easy to display features as boxes aligned to a protein sequence with zooming functionality but also includes predefined renderings for secondary structure and post-translational modifications. The library is designed to further customize this view. We demonstrate such applications of pViz using two examples: a proteomic data visualization tool with an embedded viewer for displaying features on protein structure, and a tool to visualize the results of the variant_effect_predictor tool from Ensembl. pViz.js is a JavaScript library, available on github at https://github.com/Genentech/pviz. This site includes examples and functional applications, installation instructions and usage documentation. A Readme file, which explains how to use pViz with examples, is available as Supplementary Material A. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

A Feature-Based Approach to Modeling Protein–DNA Interactions

PubMed Central

Segal, Eran

2008-01-01

Transcription factor (TF) binding to its DNA target site is a fundamental regulatory interaction. The most common model used to represent TF binding specificities is a position specific scoring matrix (PSSM), which assumes independence between binding positions. However, in many cases, this simplifying assumption does not hold. Here, we present feature motif models (FMMs), a novel probabilistic method for modeling TF–DNA interactions, based on log-linear models. Our approach uses sequence features to represent TF binding specificities, where each feature may span multiple positions. We develop the mathematical formulation of our model and devise an algorithm for learning its structural features from binding site data. We also developed a discriminative motif finder, which discovers de novo FMMs that are enriched in target sets of sequences compared to background sets. We evaluate our approach on synthetic data and on the widely used TF chromatin immunoprecipitation (ChIP) dataset of Harbison et al. We then apply our algorithm to high-throughput TF ChIP data from mouse and human, reveal sequence features that are present in the binding specificities of mouse and human TFs, and show that FMMs explain TF binding significantly better than PSSMs. Our FMM learning and motif finder software are available at http://genie.weizmann.ac.il/. PMID:18725950

Classifying brain metastases by their primary site of origin using a radiomics approach based on texture analysis: a feasibility study.

PubMed

Ortiz-Ramón, Rafael; Larroza, Andrés; Ruiz-España, Silvia; Arana, Estanislao; Moratal, David

2018-05-14

To examine the capability of MRI texture analysis to differentiate the primary site of origin of brain metastases following a radiomics approach. Sixty-seven untreated brain metastases (BM) were found in 3D T1-weighted MRI of 38 patients with cancer: 27 from lung cancer, 23 from melanoma and 17 from breast cancer. These lesions were segmented in 2D and 3D to compare the discriminative power of 2D and 3D texture features. The images were quantized using different number of gray-levels to test the influence of quantization. Forty-three rotation-invariant texture features were examined. Feature selection and random forest classification were implemented within a nested cross-validation structure. Classification was evaluated with the area under receiver operating characteristic curve (AUC) considering two strategies: multiclass and one-versus-one. In the multiclass approach, 3D texture features were more discriminative than 2D features. The best results were achieved for images quantized with 32 gray-levels (AUC = 0.873 ± 0.064) using the top four features provided by the feature selection method based on the p-value. In the one-versus-one approach, high accuracy was obtained when differentiating lung cancer BM from breast cancer BM (four features, AUC = 0.963 ± 0.054) and melanoma BM (eight features, AUC = 0.936 ± 0.070) using the optimal dataset (3D features, 32 gray-levels). Classification of breast cancer and melanoma BM was unsatisfactory (AUC = 0.607 ± 0.180). Volumetric MRI texture features can be useful to differentiate brain metastases from different primary cancers after quantizing the images with the proper number of gray-levels. • Texture analysis is a promising source of biomarkers for classifying brain neoplasms. • MRI texture features of brain metastases could help identifying the primary cancer. • Volumetric texture features are more discriminative than traditional 2D texture features.

SITE-SPECIFIC PROTOCOL FOR MEASURING SOIL RADON POTENTIALS FOR FLORIDA HOUSES

EPA Science Inventory

The report describes a protocol for site-specific measurement of radon potentials for Florida houses that is consistent with existing residential radon protection maps. The protocol gives further guidance on the possible need for radon-protective house construction features. In a...

Site 766: Sedimentology

USGS Publications Warehouse

,

1990-01-01

Site 766 is located at the base of the steep western margin of the Exmouth Plateau. The oldest sediment penetrated at Site 766, in Section 123-766A-49R-4 at 66 cm (466.7 mbsf), is uppermost Valanginian sandstone and siltstone, alternating with inclined basaltic intrusions (see "Igneous Rock Lithostratigraphy" section, this chapter). The uppermost sediment/basalt interface occurs in Section 123-766A-48R-6 at 129 cm (460.6 mbsf) At least 300 m (approximately 65%) of the sediments penetrated accumulated during the Lower Cretaceous, compared with less than 150 m thereafter. At Site 765, on the Argo Abyssal Plain, the Lower Cretaceous also is slightly more than 300 m thick. However, approximately 65% of the total sediment column at this site accumulated after the Lower Cretaceous, primarily during the Neogene. The sedimentation history, based on the age and present depth of basement(?) and time-depth relationship for oceanic crust, suggests that Site 766 began at a depth of about 800 m. However, the presence of shallow marine components in the oldest lithologic unit, if not redeposited, suggests that initial depths were shallower. Site 766 appears to have remained above or near the carbonate compensation depth (CCD) throughout its history, whereas Site 765 may have started near the CCD, but remained below it throughout most of its history.

Environmental cleanup: The challenge at the Hanford Site, Washington, USA

NASA Astrophysics Data System (ADS)

Gray, Robert H.; Becker, C. Dale

1993-07-01

Numerous challenges face those involved with developing a coordinated and consistent approach to cleaning up the US Department of Energy’s (DOE) Hanford Site in southeastern Washington. These challenges are much greater than those encountered when the site was selected and the world’s first nuclear complex was developed almost 50 years ago. This article reviews Hanford’s history, operations, waste storage/disposal activities, environmental monitoring, and today’s approach to characterize and clean up Hanford under a Federal Facility Agreement and Consent Order, signed by DOE, the Environmental Protection Agency, and the Washington Sate Department of Ecology. Although cleanup of defense-related waste at Hanford holds many positive benefits, negative features include high costs to the US taxpayer, numerous uncertainties concerning the technologies to be employed and the risks involved, and the high probability that special interest groups and activists at large will never be completely satisfied. Issues concerning future use of the site, whether to protect and preserve its natural features or open it to public exploitation, remain to be resolved.

Spatial variation in breeding habitat selection by Cerulean Warblers (Setophaga cerulea) throughout the Appalachian Mountains

USGS Publications Warehouse

Boves, Than J.; Buehler, David A.; Sheehan, James; Wood, Petra Bohall; Rodewald, Amanda D.; Larkin, Jeffrey L.; Keyser, Patrick D.; Newell, Felicity L.; Evans, Andrea; George, Gregory A.; Wigley, T.B.

2013-01-01

Studies of habitat selection are often of limited utility because they focus on small geographic areas, fail to examine behavior at multiple scales, or lack an assessment of the fitness consequences of habitat decisions. These limitations can hamper the identification of successful site-specific management strategies, which are urgently needed for severely declining species like Cerulean Warblers (Setophaga cerulea). We assessed how breeding habitat decisions made by Cerulean Warblers at multiple scales, and the subsequent effects of these decisions on nest survival, varied across the Appalachian Mountains. Selection for structural habitat features varied substantially among areas, particularly at the territory scale. Males within the least-forested landscapes selected microhabitat features that reflected more closed-canopy forest conditions, whereas males in highly forested landscapes favored features associated with canopy disturbance. Selection of nest-patch and nest-site attributes by females was more consistent across areas, with females selecting for increased tree size and understory cover and decreased basal area and midstory cover. Floristic preferences were similar across study areas: White Oak (Quercus alba), Cucumber-tree (Magnolia acuminata), and Sugar Maple (Acer saccharum) were preferred as nest trees, whereas red oak species (subgenus Erythrobalanus) and Red Maple (A. rubrum) were avoided. The habitat features that were related to nest survival also varied among study areas, and preferred features were negatively associated with nest survival at one area. Thus, our results indicate that large-scale spatial heterogeneity may influence local habitat-selection behavior and that it may be necessary to articulate site-specific management strategies for Cerulean Warblers.

Internet marketing directed at children on food and restaurant websites in two policy environments.

PubMed

Kent, M Potvin; Dubois, L; Kent, E A; Wanless, A J

2013-04-01

Food and beverage marketing has been associated with childhood obesity yet little research has examined the influence of advertising policy on children's exposure to food/beverage marketing on the Internet. The purpose of this study was to assess the influence of Quebec's Consumer Protection Act and the self-regulatory Canadian Children's Food and Beverage Advertising Initiative (CAI) on food manufacturer and restaurant websites in Canada. A content analysis of 147 French and English language food and restaurant websites was undertaken. The presence of child-directed content was assessed and an analysis of marketing features, games and activities, child protection features, and the promotion of healthy lifestyle messages was then examined on those sites with child-directed content. There were statistically no fewer French language websites (n = 22) with child-directed content compared to English language websites (n = 27). There were no statistically significant differences in the number of the various marketing features, or in the average number of marketing features between the English and French websites. There were no fewer CAI websites (n = 14) with child-directed content compared to non-CAI websites (n = 13). The CAI sites had more healthy lifestyle messages and child protection features compared to the non-CAI sites. Systematic surveillance of the Consumer Protection Act in Quebec is recommended. In the rest of Canada, the CAI needs to be significantly expanded or replaced by regulatory measures to adequately protect children from the marketing of foods/beverages high in fat, sugar, and sodium on the Internet. Copyright © 2012 The Obesity Society.

Mobile Code: The Future of the Internet

DTIC Science & Technology

1999-01-01

code ( mobile agents) to multiple proxies or servers " Customization " (e.g., re-formatting, filtering, metasearch) Information overload Diversified... Mobile code is necessary, rather than client-side code, since many customization features (such as information monitoring) do not work if the...economic foundation for Web sites, many Web sites earn money solely from advertisements . If these sites allow mobile agents to easily access the content