Cilia driven flow networks in the brain

NASA Astrophysics Data System (ADS)

Wang, Yong; Faubel, Regina; Westendorf, Chrsitian; Eichele, Gregor; Bodenschatz, Eberhard

Neurons exchange soluble substances via the cerebrospinal fluid (CSF) that fills the ventricular system. The walls of the ventricular cavities are covered with motile cilia that constantly beat and thereby induce a directional flow. We recently discovered that cilia in the third ventricle generate a complex flow pattern leading to partitioning of the ventricular volume and site-directed transport paths along the walls. Transient and daily recurrent alterations in the cilia beating direction lead to changes in the flow pattern. This has consequences for delivery of CSF components along the near wall flow. The contribution of this cilia-induced flow to overall CSF flow remains to be investigated. The state-of-art lattice Boltzmann method is adapted for studying the CFS flow. The 3D geometry of the third ventricle at high resolution was reconstructed. Simulation of CSF flow without cilia in this geometry confirmed that the previous idea about unidirectional flow does not explain how different components of CSF can be delivered to their various target sites. We study the contribution of the cilia-induced flow pattern to overall CSF flow and identify target areas for site-specific delivery of CSF-constituents with respect to the temporal changes.

On-site detection of stacked genetically modified soybean based on event-specific TM-LAMP and a DNAzyme-lateral flow biosensor.

PubMed

Cheng, Nan; Shang, Ying; Xu, Yuancong; Zhang, Li; Luo, Yunbo; Huang, Kunlun; Xu, Wentao

2017-05-15

Stacked genetically modified organisms (GMO) are becoming popular for their enhanced production efficiency and improved functional properties, and on-site detection of stacked GMO is an urgent challenge to be solved. In this study, we developed a cascade system combining event-specific tag-labeled multiplex LAMP with a DNAzyme-lateral flow biosensor for reliable detection of stacked events (DP305423× GTS 40-3-2). Three primer sets, both event-specific and soybean species-specific, were newly designed for the tag-labeled multiplex LAMP system. A trident-like lateral flow biosensor displayed amplified products simultaneously without cross contamination, and DNAzyme enhancement improved the sensitivity effectively. After optimization, the limit of detection was approximately 0.1% (w/w) for stacked GM soybean, which is sensitive enough to detect genetically modified content up to a threshold value established by several countries for regulatory compliance. The entire detection process could be shortened to 120min without any large-scale instrumentation. This method may be useful for the in-field detection of DP305423× GTS 40-3-2 soybean on a single kernel basis and on-site screening tests of stacked GM soybean lines and individual parent GM soybean lines in highly processed foods. Copyright © 2017 Elsevier B.V. All rights reserved.

Ground-water levels and flow near the industrial excess landfill, Uniontown, Ohio

USGS Publications Warehouse

Bair, E.S.; Norris, S.E.

1989-01-01

Under an interagency contractual agreement with the Agency for Toxic Substances and Disease Registration, the U.S. Geological Survey evaluated geologic and hydrogeologic data available for the Industrial Excess Landfill (IEL) site in Uniontown, Ohio. During previous studies, ground-water contaminations was detected in observation wells installed at the site and in residential wells near the site. Water levels recorded on drillers' logs from 279 wells were used to characterize the regional ground-water flow system in the area of the IEL site. On the basis of the gross lithologic differences between the unconsolidated glacial-drift material and the indurated bedrock, and the inferred differences in their hydraulic properties, the flow system in the area of the IEL site was divided into two regional aquifers: a shallow, unconfined glacial-drift aquifer and a deeper, semiconfined bedrock aquifer. About 33 percent of the drillers' logs were from wells completed in the glacial-drift aquifer, whereas 67 percent were from wells completed in the bedrock aquifer. A composite potentiometric-surface map of the glacial drift aquifer shows that the IEL site appears to straddle a prominent ground-water ridge that trends northeast-southwest. Ground water flows radially away from this ridge, primarily to the northwest and to the southeast; as a result flow in the glacial-drift aquifer as the IEL site moves in a radial pattern away from the site in all directions. A composite, regional potentiometric-surface map of the bedrock aquifer shows a similar shows a similar elongated ground-water ridge trending northeast-southwest across the north-western corner of the IEL site; however, it does not appear that the IEL site straddles the ground-water ridge in the bedrock potentiometric surface. As a consequence of the radial-type of flow pattern in the glacial-drift aquifer at the IEL site, the direction of potential off-site movement of a contaminant at the IEL site, This radial type of flow pattern may explain the nonuniform distribution of some of the contaminants detected in observation wells and residential wells, particularly if specific contaminants were not disposed of uniformly across the site. Available data also indicate a downward flow component within the glacial-drift aquifer, as manifested by a reduction of hydraulic heads with increasing depth of wells near the site. Such downward flow is consistent with the presence of the ground-water ridge, which would serve as a local recharge area within the regional flow system. Consequently, contaminants present at the site will flow both laterally within the local flow patterns and vertically downward within the flow system.

Short-term and long-term evapotranspiration rates at ecological restoration sites along a large river receiving rare flow events

USGS Publications Warehouse

Shanafield, Margaret; Jurado, Hugo Gutierrez; Burgueño, Jesús Eliana Rodríguez; Hernández, Jorge Ramírez; Jarchow, Christopher; Nagler, Pamela L.

2017-01-01

Many large rivers around the world no longer flow to their deltas, due to ever greater water withdrawals and diversions for human needs. However, the importance of riparian ecosystems is drawing increasing recognition, leading to the allocation of environmental flows to restore river processes. Accurate estimates of riparian plant evapotranspiration (ET) are needed to understand how the riverine system responds to these rare events and achieve the goals of environmental flows. In 2014, historic environmental flows were released into the Lower Colorado River at Morelos Dam (Mexico); this once perennial but now dry reach is the final stretch to the mighty Colorado River Delta. One of the primary goals was to supply native vegetation restoration sites along the reach with water to help seedlings establish and boost groundwater levels to foster the planted saplings. Patterns in ET before, during, and after the flows are useful for evaluating whether this goal was met and understanding the role that ET plays in this now ephemeral river system. Here, diurnal fluctuations in groundwater levels and MODIS data were used to compare estimates of ET specifically at three native vegetation restoration sites during 2014 planned flow events, while MODIS data was used to evaluate long-term (2002 – 2016) ET responses to restoration efforts at these sites. Overall, ET was generally 0 - 10 mm d-1 across sites and although daily ET values from groundwater data were highly variable, weekly averaged estimates were highly correlated with MODIS-derived estimates at most sites. The influence of the 2014 flow events was not immediately apparent in the results, although the process of clearing vegetation and planting native vegetation at the restoration sites was clearly visible in the results.

A comparison of hydrologic models for ecological flows and water availability

USGS Publications Warehouse

Caldwell, Peter V; Kennen, Jonathan G.; Sun, Ge; Kiang, Julie E.; Butcher, John B; Eddy, Michelle C; Hay, Lauren E.; LaFontaine, Jacob H.; Hain, Ernie F.; Nelson, Stacy C; McNulty, Steve G

2015-01-01

Robust hydrologic models are needed to help manage water resources for healthy aquatic ecosystems and reliable water supplies for people, but there is a lack of comprehensive model comparison studies that quantify differences in streamflow predictions among model applications developed to answer management questions. We assessed differences in daily streamflow predictions by four fine-scale models and two regional-scale monthly time step models by comparing model fit statistics and bias in ecologically relevant flow statistics (ERFSs) at five sites in the Southeastern USA. Models were calibrated to different extents, including uncalibrated (level A), calibrated to a downstream site (level B), calibrated specifically for the site (level C) and calibrated for the site with adjusted precipitation and temperature inputs (level D). All models generally captured the magnitude and variability of observed streamflows at the five study sites, and increasing level of model calibration generally improved performance. All models had at least 1 of 14 ERFSs falling outside a +/−30% range of hydrologic uncertainty at every site, and ERFSs related to low flows were frequently over-predicted. Our results do not indicate that any specific hydrologic model is superior to the others evaluated at all sites and for all measures of model performance. Instead, we provide evidence that (1) model performance is as likely to be related to calibration strategy as it is to model structure and (2) simple, regional-scale models have comparable performance to the more complex, fine-scale models at a monthly time step.

40 CFR 60.5200 - How do I develop a site-specific monitoring plan for my continuous monitoring, bag leak detection...

Code of Federal Regulations, 2011 CFR

2011-07-01

... the flow sensor and other necessary equipment in a position that provides a representative flow. (2) Use a flow sensor with a measurement sensitivity of no greater than 2 percent of the expected process... sensor(s) in a position that provides a representative measurement of the pressure (e.g., particulate...

A PROTOCOL FOR DETERMINING WWF SETTLING VELOCITIES FOR TREATMENT PROCESS DESIGN ENHANCEMENT

EPA Science Inventory

Urban wet weather flows (WWF) contain a high proportion of suspended solids (SS) which must be rapidly reduced before release to receiving waters. Site specific, storm-event data evaluations for designing WWF-treatment facilities differs from dry-weather flow design. WWF-sett...

Modelling the sensitivity of river reaches to water abstraction: RAPHSA- a hydroecology tool for environmental managers

NASA Astrophysics Data System (ADS)

Klaar, Megan; Laize, Cedric; Maddock, Ian; Acreman, Mike; Tanner, Kath; Peet, Sarah

2014-05-01

A key challenge for environmental managers is the determination of environmental flows which allow a maximum yield of water resources to be taken from surface and sub-surface sources, whilst ensuring sufficient water remains in the environment to support biota and habitats. It has long been known that sensitivity to changes in water levels resulting from river and groundwater abstractions varies between rivers. Whilst assessment at the catchment scale is ideal for determining broad pressures on water resources and ecosystems, assessment of the sensitivity of reaches to changes in flow has previously been done on a site-by-site basis, often with the application of detailed but time consuming techniques (e.g. PHABSIM). While this is appropriate for a limited number of sites, it is costly in terms of money and time resources and therefore not appropriate for application at a national level required by responsible licensing authorities. To address this need, the Environment Agency (England) is developing an operational tool to predict relationships between physical habitat and flow which may be applied by field staff to rapidly determine the sensitivity of physical habitat to flow alteration for use in water resource management planning. An initial model of river sensitivity to abstraction (defined as the change in physical habitat related to changes in river discharge) was developed using site characteristics and data from 66 individual PHABSIM surveys throughout the UK (Booker & Acreman, 2008). By applying a multivariate multiple linear regression analysis to the data to define habitat availability-flow curves using resource intensity as predictor variables, the model (known as RAPHSA- Rapid Assessment of Physical Habitat Sensitivity to Abstraction) is able to take a risk-based approach to modeled certainty. Site specific information gathered using desk-based, or a variable amount of field work can be used to predict the shape of the habitat- flow curves, with the uncertainty of estimates reducing as more information is collected. Creation of generalized physical habitat- discharge relationships by the model allows environmental managers to select the desired level of confidence in the modeled results, based on environmental risk and the level of resource investment available. Hence, resources can be better directed according to the level of certainty required at each site. This model is intended to provide managers with an alternative to the existing use of either expert opinion or resource intensive site- specific investigations in determining local environmental flows. Here, we outline the potential use of this tool by the Environment Agency in routine operational and investigation- specific scenarios using case studies to illustrate its use.

Approaching a universal scaling relationship between fracture stiffness and fluid flow

NASA Astrophysics Data System (ADS)

Pyrak-Nolte, Laura J.; Nolte, David D.

2016-02-01

A goal of subsurface geophysical monitoring is the detection and characterization of fracture alterations that affect the hydraulic integrity of a site. Achievement of this goal requires a link between the mechanical and hydraulic properties of a fracture. Here we present a scaling relationship between fluid flow and fracture-specific stiffness that approaches universality. Fracture-specific stiffness is a mechanical property dependent on fracture geometry that can be monitored remotely using seismic techniques. A Monte Carlo numerical approach demonstrates that a scaling relationship exists between flow and stiffness for fractures with strongly correlated aperture distributions, and continues to hold for fractures deformed by applied stress and by chemical erosion as well. This new scaling relationship provides a foundation for simulating changes in fracture behaviour as a function of stress or depth in the Earth and will aid risk assessment of the hydraulic integrity of subsurface sites.

Methods for peak-flow frequency analysis and reporting for streamgages in or near Montana based on data through water year 2015

USGS Publications Warehouse

Sando, Steven K.; McCarthy, Peter M.

2018-05-10

This report documents the methods for peak-flow frequency (hereinafter “frequency”) analysis and reporting for streamgages in and near Montana following implementation of the Bulletin 17C guidelines. The methods are used to provide estimates of peak-flow quantiles for 50-, 42.9-, 20-, 10-, 4-, 2-, 1-, 0.5-, and 0.2-percent annual exceedance probabilities for selected streamgages operated by the U.S. Geological Survey Wyoming-Montana Water Science Center (WY–MT WSC). These annual exceedance probabilities correspond to 2-, 2.33-, 5-, 10-, 25-, 50-, 100-, 200-, and 500-year recurrence intervals, respectively.Standard procedures specific to the WY–MT WSC for implementing the Bulletin 17C guidelines include (1) the use of the Expected Moments Algorithm analysis for fitting the log-Pearson Type III distribution, incorporating historical information where applicable; (2) the use of weighted skew coefficients (based on weighting at-site station skew coefficients with generalized skew coefficients from the Bulletin 17B national skew map); and (3) the use of the Multiple Grubbs-Beck Test for identifying potentially influential low flows. For some streamgages, the peak-flow records are not well represented by the standard procedures and require user-specified adjustments informed by hydrologic judgement. The specific characteristics of peak-flow records addressed by the informed-user adjustments include (1) regulated peak-flow records, (2) atypical upper-tail peak-flow records, and (3) atypical lower-tail peak-flow records. In all cases, the informed-user adjustments use the Expected Moments Algorithm fit of the log-Pearson Type III distribution using the at-site station skew coefficient, a manual potentially influential low flow threshold, or both.Appropriate methods can be applied to at-site frequency estimates to provide improved representation of long-term hydroclimatic conditions. The methods for improving at-site frequency estimates by weighting with regional regression equations and by Maintenance of Variance Extension Type III record extension are described.Frequency analyses were conducted for 99 example streamgages to indicate various aspects of the frequency-analysis methods described in this report. The frequency analyses and results for the example streamgages are presented in a separate data release associated with this report consisting of tables and graphical plots that are structured to include information concerning the interpretive decisions involved in the frequency analyses. Further, the separate data release includes the input files to the PeakFQ program, version 7.1, including the peak-flow data file and the analysis specification file that were used in the peak-flow frequency analyses. Peak-flow frequencies are also reported in separate data releases for selected streamgages in the Beaverhead River and Clark Fork Basins and also for selected streamgages in the Ruby, Jefferson, and Madison River Basins.

40 CFR 60.4880 - How do I develop a site-specific monitoring plan for my continuous monitoring, bag leak detection...

Code of Federal Regulations, 2011 CFR

2011-07-01

... this section. (1) Install the flow sensor and other necessary equipment in a position that provides a representative flow. (2) Use a flow sensor with a measurement sensitivity of no greater than 2 percent of the...) Install the pressure sensor(s) in a position that provides a representative measurement of the pressure (e...

Determination of deployment specific chemical uptake rates for SDB-RPD Empore disk using a passive flow monitor (PFM).

PubMed

O'Brien, Dominique; Bartkow, Michael; Mueller, Jochen F

2011-05-01

The use of the adsorbent styrenedivinylbenzene-reverse phase sulfonated (SDB-RPD) Empore disk in a chemcatcher type passive sampler is routinely applied in Australia when monitoring herbicides in aquatic environments. One key challenge in the use of passive samplers is mitigating the potentially confounding effects of varying flow conditions on chemical uptake by the passive sampler. Performance reference compounds (PRCs) may be applied to correct sampling rates (R(s)) for site specific changed in flow and temperature however evidence suggests the use of PRCs is unreliable when applied to adsorbent passive samplers. The use of the passive flow monitor (PFM) has been introduced for the assessment of site-specific changes in water flow. In the presented study we have demonstrated that the R(s) at which both atrazine and prometryn are accumulated within the SDB-RPD-Empore disk is dependent on the flow conditions. Further, the calibration of the measured R(s) for chemical uptake by the SDB-RPD-Empore disk to the mass lost from the PFM has shown that the PFM provides an accurate measure of R(s) for flow velocities from 0 to 16cms(-1). Notably, for flow rates >16cms(-1), a non linear increase in the R(s) of both herbicides was observed which indicates that the key resistance to uptake into the SDB-RPD Empore disk is associated with the diffusion through the overlying diffusion limiting membrane. Overall the greatest uncertainty remains at very low flow conditions, which are unlikely to often occur in surface waters. Validation of the PFM use has also been undertaken in a limited field study. Copyright © 2011 Elsevier Ltd. All rights reserved.

Influence of quasi-specific sites on kinetics of target DNA search by a sequence-specific DNA-binding protein.

PubMed

Kemme, Catherine A; Esadze, Alexandre; Iwahara, Junji

2015-11-10

Functions of transcription factors require formation of specific complexes at particular sites in cis-regulatory elements of genes. However, chromosomal DNA contains numerous sites that are similar to the target sequences recognized by transcription factors. The influence of such "quasi-specific" sites on functions of the transcription factors is not well understood at present by experimental means. In this work, using fluorescence methods, we have investigated the influence of quasi-specific DNA sites on the efficiency of target location by the zinc finger DNA-binding domain of the inducible transcription factor Egr-1, which recognizes a 9 bp sequence. By stopped-flow assays, we measured the kinetics of Egr-1's association with a target site on 143 bp DNA in the presence of various competitor DNAs, including nonspecific and quasi-specific sites. The presence of quasi-specific sites on competitor DNA significantly decelerated the target association by the Egr-1 protein. The impact of the quasi-specific sites depended strongly on their affinity, their concentration, and the degree of their binding to the protein. To quantitatively describe the kinetic impact of the quasi-specific sites, we derived an analytical form of the apparent kinetic rate constant for the target association and used it for fitting to the experimental data. Our kinetic data with calf thymus DNA as a competitor suggested that there are millions of high-affinity quasi-specific sites for Egr-1 among the 3 billion bp of genomic DNA. This study quantitatively demonstrates that naturally abundant quasi-specific sites on DNA can considerably impede the target search processes of sequence-specific DNA-binding proteins.

Ecologically-focused Calibration of Hydrological Models for Environmental Flow Applications

NASA Astrophysics Data System (ADS)

Adams, S. K.; Bledsoe, B. P.

2015-12-01

Hydrologic alteration resulting from watershed urbanization is a common cause of aquatic ecosystem degradation. Developing environmental flow criteria for urbanizing watersheds requires quantitative flow-ecology relationships that describe biological responses to streamflow alteration. Ideally, gaged flow data are used to develop flow-ecology relationships; however, biological monitoring sites are frequently ungaged. For these ungaged locations, hydrologic models must be used to predict streamflow characteristics through calibration and testing at gaged sites, followed by extrapolation to ungaged sites. Physically-based modeling of rainfall-runoff response has frequently utilized "best overall fit" calibration criteria, such as the Nash-Sutcliffe Efficiency (NSE), that do not necessarily focus on specific aspects of the flow regime relevant to biota of interest. This study investigates the utility of employing flow characteristics known a priori to influence regional biological endpoints as "ecologically-focused" calibration criteria compared to traditional, "best overall fit" criteria. For this study, 19 continuous HEC-HMS 4.0 models were created in coastal southern California and calibrated to hourly USGS streamflow gages with nearby biological monitoring sites using one "best overall fit" and three "ecologically-focused" criteria: NSE, Richards-Baker Flashiness Index (RBI), percent of time when the flow is < 1 cfs (%<1), and a Combined Calibration (RBI and %<1). Calibrated models were compared using calibration accuracy, environmental flow metric reproducibility, and the strength of flow-ecology relationships. Results indicate that "ecologically-focused" criteria can be calibrated with high accuracy and may provide stronger flow-ecology relationships than "best overall fit" criteria, especially when multiple "ecologically-focused" criteria are used in concert, despite inabilities to accurately reproduce additional types of ecological flow metrics to which the models are not explicitly calibrated.

Influence of Quasi-Specific Sites on Kinetics of Target DNA Search by a Sequence-Specific DNA-Binding Protein

PubMed Central

2015-01-01

Functions of transcription factors require formation of specific complexes at particular sites in cis-regulatory elements of genes. However, chromosomal DNA contains numerous sites that are similar to the target sequences recognized by transcription factors. The influence of such “quasi-specific” sites on functions of the transcription factors is not well understood at present by experimental means. In this work, using fluorescence methods, we have investigated the influence of quasi-specific DNA sites on the efficiency of target location by the zinc finger DNA-binding domain of the inducible transcription factor Egr-1, which recognizes a 9 bp sequence. By stopped-flow assays, we measured the kinetics of Egr-1’s association with a target site on 143 bp DNA in the presence of various competitor DNAs, including nonspecific and quasi-specific sites. The presence of quasi-specific sites on competitor DNA significantly decelerated the target association by the Egr-1 protein. The impact of the quasi-specific sites depended strongly on their affinity, their concentration, and the degree of their binding to the protein. To quantitatively describe the kinetic impact of the quasi-specific sites, we derived an analytical form of the apparent kinetic rate constant for the target association and used it for fitting to the experimental data. Our kinetic data with calf thymus DNA as a competitor suggested that there are millions of high-affinity quasi-specific sites for Egr-1 among the 3 billion bp of genomic DNA. This study quantitatively demonstrates that naturally abundant quasi-specific sites on DNA can considerably impede the target search processes of sequence-specific DNA-binding proteins. PMID:26502071

Regional flood probabilities

USGS Publications Warehouse

Troutman, Brent M.; Karlinger, Michael R.

2003-01-01

The T‐year annual maximum flood at a site is defined to be that streamflow, that has probability 1/T of being exceeded in any given year, and for a group of sites the corresponding regional flood probability (RFP) is the probability that at least one site will experience a T‐year flood in any given year. The RFP depends on the number of sites of interest and on the spatial correlation of flows among the sites. We present a Monte Carlo method for obtaining the RFP and demonstrate that spatial correlation estimates used in this method may be obtained with rank transformed data and therefore that knowledge of the at‐site peak flow distribution is not necessary. We examine the extent to which the estimates depend on specification of a parametric form for the spatial correlation function, which is known to be nonstationary for peak flows. It is shown in a simulation study that use of a stationary correlation function to compute RFPs yields satisfactory estimates for certain nonstationary processes. Application of asymptotic extreme value theory is examined, and a methodology for separating channel network and rainfall effects on RFPs is suggested. A case study is presented using peak flow data from the state of Washington. For 193 sites in the Puget Sound region it is estimated that a 100‐year flood will occur on the average every 4.5 years.

The hydrologic bench-mark program; a standard to evaluate time-series trends in selected water-quality constituents for streams in Georgia

USGS Publications Warehouse

Buell, G.R.; Grams, S.C.

1985-01-01

Significant temporal trends in monthly pH, specific conductance, total alkalinity, hardness, total nitrite-plus-nitrite nitrogen, and total phosphorus measurements at five stream sites in Georgia were identified using a rank correlation technique, the seasonal Kendall test and slope estimator. These sites include a U.S. Geological Survey Hydrologic Bench-Mark site, Falling Creek near Juliette, and four periodic water-quality monitoring sites. Comparison of raw data trends with streamflow-residual trends and, where applicable, with chemical-discharge trends (instantaneous fluxes) shws that some of these trends are responses to factors other than changing streamflow. Percentages of forested, agricultural, and urban cover with each basin did not change much during the periods of water-quality record, and therefore these non-flow-related trends are not obviously related to changes in land cover or land use. Flow-residual water-quality trends at the Hydrologic Bench-Mark site and at the Chattooga River site probably indicate basin reponses to changes in the chemical quality of atmospheric deposition. These two basins are predominantly forested and have received little recent human use. Observed trends at the other three sites probably indicate basin responses to various land uses and water uses associated with agricultural and urban land or to changes in specific uses. (USGS)

A water framework directive (WFD) compliant determination of eologically acceptable flows in alpine rivers - a river type specific approach

NASA Astrophysics Data System (ADS)

Jäger, Paul; Zitek, Andreas

2010-05-01

Currently the EU-Water Framework Directive (WFD) represents the driving force behind the assessment for rehabilitation and conservation of aquatic resources throughout Europe. Hydropower production, often considered as "green energy", in the past has put significant pressures on river systems like fragmentation by weirs, impoundment, hydropeaking and water abstraction. Due to the limited availability of data for determining ecologically acceptable flow for rivers at water abstraction sites, a special monitoring program was conducted in the federal state of Salzburg in Austria from 2006 to 2009. Water abstraction sites at 19 hydropower plants, mostly within the trout region of the River Salzach catchment, were assessed in detail with regard to the effect of water abstraction on fish and macrozoobenthos. Based on a detailed assessment of the specific local hydro-morphological and biological situations, the validity of natural low flow criteria (Absolute Minimum Flow - AMF, the lowest daily average flow ever measured and Mean Annual Daily Low Flow - MADLF) as starting points for the determination of an ecologically acceptable flow was tested. It was assessed, if a good ecological status in accordance with the EU-WFD can be maintained at natural AMF. Additionally it was tested, if important habitat parameters describing connectivity, river type specific flow variability and river type specific habitats are maintained at this discharge. Habitat modelling was applied in some situations. Hydraulic results showed that at AMF the highest flow velocity classes were lost in most situations. When AMF was significantly undercut, flow velocities between 0,0 - 0,4 m/s became dominant, describing the loss of the river type specific flow character, leading to a loss of river type specific flow variability and habitats and increased sedimentation of fines. Furthermore limits for parameters describing connectivity for fish like maximum depth at the pessimum profile and minimum flow velocity in thalweg were undercut. Additionally a significant loss of wetted width in relation to the wetted width at MADLF was documented, leading to significantly reduced ecologically available habitats. At AMF the existence of a minimum amount of usable habitat prevented a total loss of adult fish, and a good ecological status was documented by the Fish Index Austria (FIA) in all situations, where water abstraction represented the only human pressure, and AMF was left in the river as residual flow. The fish ecological status was significantly worse in river stretches where minimum flow was significantly below the AMF. However, in about one third of these stretches a good ecological status was documented by fish. Fine grained habitat structures, expressed by mean choriotope sizes (> 20 cm) and relative roughness were found to provide enough shelter, especially for brown trout, to maintain a high variance of fish lengths influencing both, the age structure and biomass. Both variables are especially highly relevant when calculating the ecological status of rivers using the FIA, when only brown trout occurs as leading species, accompanied only by the bullhead, Cottus gobio L.. However, mean fish lengths and weights were significantly smaller in most water abstraction sites. The method currently applied for determining the ecological status by macrozoobenthos failed, because the method is still based on some types of water pollution and the flow velocity as dominating factor in rivers is not adequately considered. However, a species specific analysis of the data showed a consistent loss of rheophilic species at water abstraction sites. Based on this, recommendations for a more specified assessment of the ecological status by benthic invertebrates were developed. Natural factors like slope with significant effects on hydraulic stress (bottom shear stress, maximum flow velocities, etc.) strongly overlaid the effects of water abstraction within the whole dataset. Therefore an adequate consideration of natural factors like slope, hydraulic stress and structure parameters like mean choriotope size, and a realistic identification of the significant driving pressures (water abstraction, fragmentation, and channelization) proved to be a crucial pre-requisite for a meaningful analysis and interpretation of data and determination of efficient restoration measures. Summarizing, it can be concluded that the AMF represents a valid base for determining the ecologically acceptable flow. In most cases parameters for connectivity and river type specific habitat availability are met at this discharge. However, as this discharge represents a natural catastrophic event, it is recommended to add a dynamic component to this minimum base flow to maintain at least to some extent the river type specific flow variability, contributing to a maintenance of natural geomorphologic and ecological processes linked to natural flow patterns. Especially higher discharges, able to move substrates and flush fine sediments, should be provided in their river type specific seasonal dynamics. This seasonal clearing of sediments has been proved to be strongly related to the reproductive success of trout in the past and provides interstitial habitats for invertebrates at ecologically meaningful times of the year. Finally, re-establishment of river connectivity at weirs and the morphological restructuring of highly channelized rivers can be seen as other important pre-requisites to achieve the good ecological status in alpine river systems.

Environmental conditions influence tissue regeneration rates in scleractinian corals.

PubMed

Sabine, Alexis M; Smith, Tyler B; Williams, Dana E; Brandt, Marilyn E

2015-06-15

Natural and anthropogenic factors may influence corals' ability to recover from partial mortality. To examine how environmental conditions affect lesion healing, we assessed several water quality parameters and tissue regeneration rates in corals at six reefs around St. Thomas, US Virgin Islands. We hypothesized that sites closer to developed areas would have poor water quality due to proximity to anthropogenic stresses, which would impede tissue regeneration. We found that water flow and turbidity most strongly influenced lesion recovery rates. The most impacted site, with high turbidity and low flow, recovered almost three times slower than the least impacted site, with low turbidity, high flow, and low levels of anthropogenic disturbance. Our results illustrate that in addition to lesion-specific factors known to affect tissue regeneration, environmental conditions can also control corals' healing rates. Resource managers can use this information to protect low-flow, turbid nearshore reefs by minimizing sources of anthropogenic stress. Copyright © 2015 Elsevier Ltd. All rights reserved.

A revised logistic regression equation and an automated procedure for mapping the probability of a stream flowing perennially in Massachusetts

USGS Publications Warehouse

Bent, Gardner C.; Steeves, Peter A.

2006-01-01

A revised logistic regression equation and an automated procedure were developed for mapping the probability of a stream flowing perennially in Massachusetts. The equation provides city and town conservation commissions and the Massachusetts Department of Environmental Protection a method for assessing whether streams are intermittent or perennial at a specific site in Massachusetts by estimating the probability of a stream flowing perennially at that site. This information could assist the environmental agencies who administer the Commonwealth of Massachusetts Rivers Protection Act of 1996, which establishes a 200-foot-wide protected riverfront area extending from the mean annual high-water line along each side of a perennial stream, with exceptions for some urban areas. The equation was developed by relating the observed intermittent or perennial status of a stream site to selected basin characteristics of naturally flowing streams (defined as having no regulation by dams, surface-water withdrawals, ground-water withdrawals, diversion, wastewater discharge, and so forth) in Massachusetts. This revised equation differs from the equation developed in a previous U.S. Geological Survey study in that it is solely based on visual observations of the intermittent or perennial status of stream sites across Massachusetts and on the evaluation of several additional basin and land-use characteristics as potential explanatory variables in the logistic regression analysis. The revised equation estimated more accurately the intermittent or perennial status of the observed stream sites than the equation from the previous study. Stream sites used in the analysis were identified as intermittent or perennial based on visual observation during low-flow periods from late July through early September 2001. The database of intermittent and perennial streams included a total of 351 naturally flowing (no regulation) sites, of which 85 were observed to be intermittent and 266 perennial. Stream sites included in the database had drainage areas that ranged from 0.04 to 10.96 square miles. Of the 66 stream sites with drainage areas greater than 2.00 square miles, 2 sites were intermittent and 64 sites were perennial. Thus, stream sites with drainage areas greater than 2.00 square miles were assumed to flow perennially, and the database used to develop the logistic regression equation included only those stream sites with drainage areas less than 2.00 square miles. The database for the equation included 285 stream sites that had drainage areas less than 2.00 square miles, of which 83 sites were intermittent and 202 sites were perennial. Results of the logistic regression analysis indicate that the probability of a stream flowing perennially at a specific site in Massachusetts can be estimated as a function of four explanatory variables: (1) drainage area (natural logarithm), (2) areal percentage of sand and gravel deposits, (3) areal percentage of forest land, and (4) region of the state (eastern region or western region). Although the equation provides an objective means of determining the probability of a stream flowing perennially at a specific site, the reliability of the equation is constrained by the data used in its development. The equation is not recommended for (1) losing stream reaches or (2) streams whose ground-water contributing areas do not coincide with their surface-water drainage areas, such as many streams draining the Southeast Coastal Region-the southern part of the South Coastal Basin, the eastern part of the Buzzards Bay Basin, and the entire area of the Cape Cod and the Islands Basins. If the equation were used on a regulated stream site, the estimated intermittent or perennial status would reflect the natural flow conditions for that site. An automated mapping procedure was developed to determine the intermittent or perennial status of stream sites along reaches throughout a basin. The procedure delineates the drainage area boundaries, determines values for the four explanatory variables, and solves the equation for estimating the probability of a stream flowing perennially at two locations on a headwater (first-order) stream reach-one near its confluence or end point and one near its headwaters or start point. The automated procedure then determines the intermittent or perennial status of the reach on the basis of the calculated probability values and a probability cutpoint (a stream is considered to flow perennially at a cutpoint of 0.56 or greater for this study) for the two locations or continues to loop upstream or downstream between locations less than and greater than the cutpoint of 0.56 to determine the transition point from an intermittent to a perennial stream. If the first-order stream reach is determined to be intermittent, the procedure moves to the next downstream reach and repeats the same process. The automated procedure then moves to the next first-order stream and repeats the process until the entire basin is mapped. A map of the intermittent and perennial stream reaches in the Shawsheen River Basin is provided on a CD-ROM that accompanies this report. The CD-ROM also contains ArcReader 9.0, a freeware product, that allows a user to zoom in and out, set a scale, pan, turn on and off map layers (such as a USGS topographic map), and print a map of the stream site with a scale bar. Maps of the intermittent and perennial stream reaches in Massachusetts will provide city and town conservation commissions and the Massachusetts Department of Environmental Protection with an additional method for assessing the intermittent or perennial status of stream sites.

Drought effects on water quality in the South Platte River Basin, Colorado

USGS Publications Warehouse

Sprague, Lori A.

2005-01-01

Twenty-three stream sites representing a range of forested, agricultural, and urban land uses were sampled in the South Platte River Basin of Colorado from July through September 2002 to characterize water quality during drought conditions. With a few exceptions, dissolved ammonia, Kjeldahl nitrogen, total phosphorus, and dissolved orthophosphate concentrations were similar to seasonal historical levels in all land use areas during the drought. At some agricultural sites, decreased dilution of irrigation return flow may have contributed to higher concentrations of some nutrient species, increased primary productivity, and higher dissolved oxygen concentrations. At some urban sites, decreased dilution of base flow and wastewater treatment plant effluent may have contributed to higher dissolved nitrite-plus-nitrate concentrations, increased primary productivity, and higher dissolved oxygen concentrations. Total pesticide concentrations in urban and agricultural areas were not consistently higher or lower during the drought. At most forested sites, decreased dilution of ground water-derived calcium bicarbonate type base flow likely led to elevated pH and specific-conductance values. Water temperatures at many of the forested sites also were higher, contributing to lower dissolved oxygen concentrations during the drought.

Convection, diffusion and reaction in a surface-based biosensor: modeling of cooperativity and binding site competition on the surface and in the hydrogel.

PubMed

Lebedev, Konstantin; Mafé, Salvador; Stroeve, Pieter

2006-04-15

We study theoretically the transport and kinetic processes underlying the operation of a biosensor (particularly the surface plasmon sensor "Biacore") used to study the surface binding kinetics of biomolecules in solution to immobilized receptors. Unlike previous studies, we concentrate mainly on the modeling of system-specific phenomena rather than on the influence of mass transport limitations on the intrinsic kinetic rate constants determined from binding data. In the first problem, the case of two-site binding where each receptor unit on the surface can accommodate two analyte molecules on two different sites is considered. One analyte molecule always binds first to a specific site. Subsequently, the second analyte molecule can bind to the adjacent unoccupied site. In the second problem, two different analytes compete for one binding site on the same surface receptor. Finally, the third problem considers the case of positive cooperativity among bound molecules in the hydrogel using a simple mean-field approach. The transport in both the flow channel and the hydrogel phases of the biosensor is taken into account in this case (with few exceptions, most previous studies assume a simpler model in which the hydrogel is treated as a planar surface with the receptors). We consider simultaneously diffusion and convection through the flow channel together with diffusion and cooperativity binding on the surface and in the hydrogel. In each case, typical results for the concentration contours of the free and bound molecules in the flow channel and hydrogel regions are presented together with the time-dependent association/dissociation curves and reaction rates. For binding site competition, the analysis predicts overshoot phenomena.

Site-Specific, Covalent Immobilization of Dehalogenase ST2570 Catalyzed by Formylglycine-Generating Enzymes and Its Application in Batch and Semi-Continuous Flow Reactors.

PubMed

Jian, Hui; Wang, Yingwu; Bai, Yan; Li, Rong; Gao, Renjun

2016-07-11

Formylglycine-generating enzymes can selectively recognize and oxidize cysteine residues within the sulfatase sub motif at the terminus of proteins to form aldehyde-bearing formylglycine (FGly) residues, and are normally used in protein labeling. In this study, an aldehyde tag was introduced to proteins using formylglycine-generating enzymes encoded by a reconstructed set of the pET28a plasmid system for enzyme immobilization. The haloacid dehalogenase ST2570 from Sulfolobus tokodaii was used as a model enzyme. The C-terminal aldehyde-tagged ST2570 (ST2570CQ) exhibited significant enzymological properties, such as new free aldehyde groups, a high level of protein expression and improved enzyme activity. SBA-15 has widely been used as an immobilization support for its large surface and excellent thermal and chemical stability. It was functionalized with amino groups by aminopropyltriethoxysilane. The C-terminal aldehyde-tagged ST2570 was immobilized to SBA-15 by covalent binding. The site-specific immobilization of ST2570 avoided the chemical denaturation that occurs in general covalent immobilization and resulted in better fastening compared to physical adsorption. The site-specific immobilized ST2570 showed 3-fold higher thermal stability, 1.2-fold higher catalytic ability and improved operational stability than free ST2570. The site-specific immobilized ST2570 retained 60% of its original activity after seven cycles of batch operation, and it was superior to the ST2570 immobilized to SBA-15 by physical adsorption, which loses 40% of its original activity when used for the second time. It is remarkable that the site-specific immobilized ST2570 still retained 100% of its original activity after 10 cycles of reuse in the semi-continuous flow reactor. Overall, these results provide support for the industrial-scale production and application of site-specific, covalently immobilized ST2570.

Quivering on the brink: Common observations of turbidity current frequency and triggering in disparate settings

NASA Astrophysics Data System (ADS)

Clare, M. A.; Rosenberger, K. J.; Parsons, D. R.; Gales, J. A.; Gwiazda, R.; Paull, C. K.; Talling, P.; Cartigny, M.; Azpiroz, M.; Pope, E.; Hizzett, J. L.; Hughes Clarke, J. E.

2017-12-01

Turbidity currents pose a hazard to seafloor infrastructure, convey sediment to the deep sea, and provide nutrients to benthic communities. Despite their importance, we still know little about specifically how and when such powerful long run-out flows are triggered, and how strongly different trigger mechanisms control flow behaviour. New advances in direct monitoring now allow us to precisely constrain turbidity current frequency and test the efficiency of previously hypothesised triggering mechanisms. Here, we document the timing of sub-annual turbidity currents based on direct measurements using Acoustic Doppler Current Profilers at four different sites. Two sites are located at offshore fjord-head deltas in British Columbia (Squamish delta & Bute Inlet), which are fed by meltwater in spring and summer. The third is the deep-water Congo Canyon, which is located offshore Angola, and is fed by the second largest river in the world. Fourth is the Monterey Canyon, offshore California, which does not have a direct link to a river and is instead fed by littoral drift. Despite the differences in scale and setting, all of the sites show similar trends in turbidity current frequency. The first commonality is that flow timing is typically delayed (hours to weeks) following periods of rapid sediment discharge, rather than immediately coincident with them. The second commonality is that flows are rare (typically they do not occur at all) for at least half of the year in each of the sites. Instead, flows are clustered within a specific time window. We underline the importance of preconditioning prior to, and during that time window and propose that an environmental threshold must be exceeded in order to "switch on" these systems. This threshold primarily relates to magnitude of sediment delivery at the head of the channel or canyon. Once that threshold is surpassed, then systems are primed for action, quivering on the brink, allowing even small external perturbations to trigger flows.

Hydrogeologic framework, hydrology, and refined conceptual model of groundwater flow for Coastal Plain aquifers at the Standard Chlorine of Delaware, Inc. Superfund Site, New Castle County, Delaware, 2005-12

USGS Publications Warehouse

Brayton, Michael J.; Cruz, Roberto M.; Myers, Luke; Degnan, James R.; Raffensperger, Jeff P.

2015-01-01

The regional hydrogeologic framework indicates that the site is underlain by Coastal Plain sediments of the Columbia, Merchantville, and Potomac Formations. Two primary aquifers underlying the site, the Columbia and the upper Potomac, are separated by the Merchantville Formation confining unit. Local groundwater flow in the surficial (Columbia) aquifer is controlled by topography and generally flows northward and discharges to nearby surface water. Regional flow within the Potomac aquifer is towards the southeast, and is strongly influenced by major water withdrawals locally. Previous investigations at the site indicated that contaminants, primarily benzene and chlorinated benzene compounds, were present in the Columbia aquifer in most locations; however, there were only limited detections in the upper Potomac aquifer as of 2004. From 2005 through 2012, the USGS designed a monitoring network, assisted with exploratory drilling, collected data at monitoring wells, conducted geophysical surveys, evaluated water-level responses in wells during pumping of a production well, and evaluated major aquifer withdrawals. Data collected through these efforts were used to refine the local conceptual flow system. The refined conceptual flow system for the site includes: (a) identification of gaps in confining units in the study area, (b) identification and correlation of multiple water-bearing sand intervals within the upper Potomac Formation, (c) connections between groundwater and surface water, (d) connections between shallow and deeper groundwater, (e) new water-level (or potentiometric surface) maps and inferred flow directions, and (f) identification of major local pumping well influences. The implications of the revised conceptual flow system on the occurrence and movement of site contaminants are that the resulting detection of contaminants in the upper Potomac aquifer at specific well locations can be attributed primarily to either advective lateral transport, direct vertical contaminant transport, or a combination of vertical and lateral movement resulting from changes in water withdrawal rates over time.

10 CFR Appendix E to Part 50 - Emergency Planning and Preparedness for Production and Utilization Facilities

Code of Federal Regulations, 2011 CFR

2011-01-01

... could communicate with a safety system. In this case, appropriate isolation devices would be required at..., feedwater flow, and reactor power; (2) Safety injection: Reactor core isolation cooling flow, high-pressure... data points identified in the ERDS Data Point Library 9 (site specific data base residing on the ERDS...

10 CFR Appendix E to Part 50 - Emergency Planning and Preparedness for Production and Utilization Facilities

Code of Federal Regulations, 2010 CFR

2010-01-01

... could communicate with a safety system. In this case, appropriate isolation devices would be required at..., feedwater flow, and reactor power; (2) Safety injection: Reactor core isolation cooling flow, high-pressure... data points identified in the ERDS Data Point Library 9 (site specific data base residing on the ERDS...

Mechanistic linkage of hydrologic regime to summer growth of age-0 Atlantic salmon

Treesearch

K.H. Nislow; A.J. Sepulveda; C.L. Folt

2004-01-01

Significant reductions in juvenile stream salmonid growth have been observed in association with low summer flow, but underlying mechanisms are poorly understood and predictive power is limited. We conducted a stage-specific analysis of the relationship between summer flow and the growth of age-0 Atlantic salmon Salmo salar in two rearing sites in...

The performance characteristics of lateral flow devices with 2 strains of highly pathogenic avian influenza virus

USDA-ARS?s Scientific Manuscript database

Lateral flow devices (LFD) are commercially available and provide a fast, highly specific, on-site test for avian influenza. Because of the low analytic sensitivity of LFD tests at low virus concentrations, targeted sampling of sick and dead birds has been proposed in order to increase detection pr...

A low-cost method to measure the timing of post-fire flash floods and debris flows relative to rainfall

USGS Publications Warehouse

Kean, Jason W.; Staley, Dennis M.; Leeper, Robert J.; Schmidt, Kevin Michael; Gartner, Joseph E.

2012-01-01

Data on the specific timing of post-fire flash floods and debris flows are very limited. We describe a method to measure the response times of small burned watersheds to rainfall using a low-cost pressure transducer, which can be installed quickly after a fire. Although the pressure transducer is not designed for sustained sampling at the fast rates ({less than or equal to}2 sec) used at more advanced debris-flow monitoring sites, comparisons with high-data rate stage data show that measured spikes in pressure sampled at 1-min intervals are sufficient to detect the passage of most debris flows and floods. Post-event site visits are used to measure the peak stage and identify flow type based on deposit characteristics. The basin response timescale (tb) to generate flow at each site was determined from an analysis of the cross correlation between time series of flow pressure and 5-min rainfall intensity. This timescale was found to be less than 30 minutes for 40 post-fire floods and 11 post-fire debris flows recorded in 15 southern California watersheds ({less than or equal to} 1.4 km2). Including data from 24 other debris flows recorded at 5 more instrumentally advanced monitoring stations, we find there is not a substantial difference in the median tb for floods and debris flows (11 and 9 minutes, respectively); however, there are slight, statistically significant differences in the trends of flood and debris-flow tb with basin area, which are presumably related to differences in flow speed between floods and debris flows.

Modeling Patient-Specific Magnetic Drug Targeting Within the Intracranial Vasculature

PubMed Central

Patronis, Alexander; Richardson, Robin A.; Schmieschek, Sebastian; Wylie, Brian J. N.; Nash, Rupert W.; Coveney, Peter V.

2018-01-01

Drug targeting promises to substantially enhance future therapies, for example through the focussing of chemotherapeutic drugs at the site of a tumor, thus reducing the exposure of healthy tissue to unwanted damage. Promising work on the steering of medication in the human body employs magnetic fields acting on nanoparticles made of paramagnetic materials. We develop a computational tool to aid in the optimization of the physical parameters of these particles and the magnetic configuration, estimating the fraction of particles reaching a given target site in a large patient-specific vascular system for different physiological states (heart rate, cardiac output, etc.). We demonstrate the excellent computational performance of our model by its application to the simulation of paramagnetic-nanoparticle-laden flows in a circle of Willis geometry obtained from an MRI scan. The results suggest a strong dependence of the particle density at the target site on the strength of the magnetic forcing and the velocity of the background fluid flow. PMID:29725303

Modeling Patient-Specific Magnetic Drug Targeting Within the Intracranial Vasculature.

PubMed

Patronis, Alexander; Richardson, Robin A; Schmieschek, Sebastian; Wylie, Brian J N; Nash, Rupert W; Coveney, Peter V

2018-01-01

Drug targeting promises to substantially enhance future therapies, for example through the focussing of chemotherapeutic drugs at the site of a tumor, thus reducing the exposure of healthy tissue to unwanted damage. Promising work on the steering of medication in the human body employs magnetic fields acting on nanoparticles made of paramagnetic materials. We develop a computational tool to aid in the optimization of the physical parameters of these particles and the magnetic configuration, estimating the fraction of particles reaching a given target site in a large patient-specific vascular system for different physiological states (heart rate, cardiac output, etc.). We demonstrate the excellent computational performance of our model by its application to the simulation of paramagnetic-nanoparticle-laden flows in a circle of Willis geometry obtained from an MRI scan. The results suggest a strong dependence of the particle density at the target site on the strength of the magnetic forcing and the velocity of the background fluid flow.

Antecedent flow conditions and nitrate concentrations in the Mississippi River basin

USGS Publications Warehouse

Murphy, Jennifer C.; Hirsch, Robert M.; Sprague, Lori A.

2014-01-01

The relationship between antecedent flow conditions and nitrate concentrations was explored at eight sites in the 2.9 million square kilometers (km2) Mississippi River basin, USA. Antecedent flow conditions were quantified as the ratio between the mean daily flow of the previous year and the mean daily flow from the period of record (Qratio), and the Qratio was statistically related to nitrate anomalies (the unexplained variability in nitrate concentration after filtering out season, long-term trend, and contemporaneous flow effects) at each site. Nitrate anomaly and Qratio were negatively related at three of the four major tributary sites and upstream in the Mississippi River, indicating that when mean daily streamflow during the previous year was lower than average, nitrate concentrations were higher than expected. The strength of these relationships increased when data were subdivided by contemporaneous flow conditions. Five of the eight sites had significant negative relationships (p ≤ 0.05) at high or moderately high contemporaneous flows, suggesting nitrate that accumulates in these basins during a drought is flushed during subsequent high flows. At half of the sites, when mean daily flow during the previous year was 50 percent lower than average, nitrate concentration can be from 9 to 27 percent higher than nitrate concentrations that follow a year with average mean daily flow. Conversely, nitrate concentration can be from 8 to 21 percent lower than expected when flow during the previous year was 50 percent higher than average. Previously documented for small, relatively homogenous basins, our results suggest that relationships between antecedent flows and nitrate concentrations are also observable at a regional scale. Relationships were not observed (using all contemporaneous flow data together) for basins larger than 1 million km2, suggesting that above this limit the overall size and diversity within these basins may necessitate the use of more complicated statistical approaches or that there may be no discernible basin-wide relationship with antecedent flow. The relationships between nitrate concentration and Qratio identified in this study serve as the basis for future studies that can better define specific hydrologic processes occurring during and after a drought (or high flow period) which influence nitrate concentration, such as the duration or magnitude of low flows, and the timing of low and high flows.

Enumeration of antigen-specific CD8+ T lymphocytes by single-platform, HLA tetramer-based flow cytometry: a European multicenter evaluation.

PubMed

Heijnen, Ingmar A F M; Barnett, David; Arroz, Maria J; Barry, Simon M; Bonneville, Marc; Brando, Bruno; D'hautcourt, Jean-Luc; Kern, Florian; Tötterman, Thomas H; Marijt, Erik W A; Bossy, David; Preijers, Frank W M B; Rothe, Gregor; Gratama, Jan W

2004-11-01

HLA class I peptide tetramers represent powerful diagnostic tools for detection and monitoring of antigen-specific CD8(+) T cells. The impetus for the current multicenter study is the critical need to standardize tetramer flow cytometry if it is to be implemented as a routine diagnostic assay. Hence, the European Working Group on Clinical Cell Analysis set out to develop and evaluate a single-platform tetramer-based method that used cytomegalovirus (CMV) as the antigenic model. Absolute numbers of CMV-specific CD8(+) T cells were obtained by combining the percentage of tetramer-binding cells with the absolute CD8(+) T-cell count. Six send-outs of stabilized blood from healthy individuals or CMV-carrying donors with CMV-specific CD8(+) T-cell counts of 3 to 10 cells/microl were distributed to 7 to 16 clinical sites. These sites were requested to enumerate CD8(+) T cells and, in the case of CMV-positive donors, CMV-specific subsets on three separate occasions using the standard method. Between-site coefficients of variation of less than 10% (absolute CD8(+) T-cell counts) and approximately 30% (percentage and absolute numbers of CMV-specific CD8(+) T cells) were achieved. Within-site coefficients of variation were approximately 5% (absolute CD8(+) T-cell counts), approximately 9% (percentage CMV-specific CD8(+) T cells), and approximately 17% (absolute CMV-specific CD8(+) T-cell counts). The degree of variation tended to correlate inversely with the proportion of CMV-specific CD8(+) T-cell subsets. The single-platform MHC tetramer-based method for antigen-specific CD8(+) T-cell counting has been evaluated by a European group of laboratories and can be considered a reproducible assay for routine enumeration of antigen-specific CD8(+) T cells. (c) 2004 Wiley-Liss, Inc.

Effects of capillarity and microtopography on wetland specific yield

USGS Publications Warehouse

Sumner, D.M.

2007-01-01

Hydrologic models aid in describing water flows and levels in wetlands. Frequently, these models use a specific yield conceptualization to relate water flows to water level changes. Traditionally, a simple conceptualization of specific yield is used, composed of two constant values for above- and below-surface water levels and neglecting the effects of soil capillarity and land surface microtopography. The effects of capiltarity and microtopography on specific yield were evaluated at three wetland sites in the Florida Everglades. The effect of capillarity on specific yield was incorporated based on the fillable pore space within a soil moisture profile at hydrostatic equilibrium with the water table. The effect of microtopography was based on areal averaging of topographically varying values of specific yield. The results indicate that a more physically-based conceptualization of specific yield incorporating capillary and microtopographic considerations can be substantially different from the traditional two-part conceptualization, and from simpler conceptualizations incorporating only capillarity or only microtopography. For the sites considered, traditional estimates of specific yield could under- or overestimate the more physically based estimates by a factor of two or more. The results suggest that consideration of both capillarity and microtopography is important to the formulation of specific yield in physically based hydrologic models of wetlands. ?? 2007, The Society of Wetland Scientists.

Reconnection AND Bursty Bulk Flow Associated Turbulence IN THE Earth'S Plasma Sheet

NASA Astrophysics Data System (ADS)

Voros, Z.; Nakamura, R.; Baumjohann, W.; Runov, A.; Volwerk, M.; Jankovicova, D.; Balogh, A.; Klecker, B.

2006-12-01

Reconnection related fast flows in the Earth's plasma sheet can be associated with several accompanying phenomena, such as magnetic field dipolarization, current sheet thinning and turbulence. Statistical analysis of multi-scale properties of turbulence facilitates to understand the interaction of the plasma flow with the dipolar magnetic field and to recognize the remote or nearby temporal and spatial characteristics of reconnection. The main emphasis of this presentation is on differentiating between the specific statistical features of flow associated fluctuations at different distances from the reconnection site.

40 CFR 63.9917 - How do I demonstrate initial compliance with the emission limitations and work practice standards...

Code of Federal Regulations, 2011 CFR

2011-07-01

... subpart; and (2) For each wet scrubber subject to the operating limits for pressure drop and scrubber water flow rate in § 63.9890(b), you have established appropriate site-specific operating limits and have a record of the pressure drop and scrubber water flow rate measured during the performance test in...

40 CFR 63.9917 - How do I demonstrate initial compliance with the emission limitations and work practice standards...

Code of Federal Regulations, 2010 CFR

2010-07-01

... subpart; and (2) For each wet scrubber subject to the operating limits for pressure drop and scrubber water flow rate in § 63.9890(b), you have established appropriate site-specific operating limits and have a record of the pressure drop and scrubber water flow rate measured during the performance test in...

40 CFR 63.9917 - How do I demonstrate initial compliance with the emission limitations and work practice standards...

Code of Federal Regulations, 2014 CFR

2014-07-01

... subpart; and (2) For each wet scrubber subject to the operating limits for pressure drop and scrubber water flow rate in § 63.9890(b), you have established appropriate site-specific operating limits and have a record of the pressure drop and scrubber water flow rate measured during the performance test in...

40 CFR 63.9917 - How do I demonstrate initial compliance with the emission limitations and work practice standards...

Code of Federal Regulations, 2012 CFR

2012-07-01

... subpart; and (2) For each wet scrubber subject to the operating limits for pressure drop and scrubber water flow rate in § 63.9890(b), you have established appropriate site-specific operating limits and have a record of the pressure drop and scrubber water flow rate measured during the performance test in...

40 CFR 63.9917 - How do I demonstrate initial compliance with the emission limitations and work practice standards...

Code of Federal Regulations, 2013 CFR

2013-07-01

... subpart; and (2) For each wet scrubber subject to the operating limits for pressure drop and scrubber water flow rate in § 63.9890(b), you have established appropriate site-specific operating limits and have a record of the pressure drop and scrubber water flow rate measured during the performance test in...

Detection of H5 and H7 highly pathogenic avian influenza virus with lateral flow devices: performance with healthy, sick and dead chickens

USDA-ARS?s Scientific Manuscript database

Rapid detection of highly pathogenic avian influenza virus (HPAIV) in the field is critical for effective disease control and to differentiate it from other diseases, such as Newcastle disease. Lateral flow devices (LFD) are commercially available and provide a fast, highly specific, on-site test fo...

Conformational dynamics of abasic DNA upon interactions with AP endonuclease 1 revealed by stopped-flow fluorescence analysis.

PubMed

Kanazhevskaya, Lyubov Yu; Koval, Vladimir V; Vorobjev, Yury N; Fedorova, Olga S

2012-02-14

Apurinic/apyrimidinic (AP) sites are abundant DNA lesions arising from exposure to UV light, ionizing radiation, alkylating agents, and oxygen radicals. In human cells, AP endonuclease 1 (APE1) recognizes this mutagenic lesion and initiates its repair via a specific incision of the phosphodiester backbone 5' to the AP site. We have investigated a detailed mechanism of APE1 functioning using fluorescently labeled DNA substrates. A fluorescent adenine analogue, 2-aminopurine, was introduced into DNA substrates adjacent to the abasic site to serve as an on-site reporter of conformational transitions in DNA during the catalytic cycle. Application of a pre-steady-state stopped-flow technique allows us to observe changes in the fluorescence intensity corresponding to different stages of the process in real time. We also detected an intrinsic Trp fluorescence of the enzyme during interactions with 2-aPu-containing substrates. Our data have revealed a conformational flexibility of the abasic DNA being processed by APE1. Quantitative analysis of fluorescent traces has yielded a minimal kinetic scheme and appropriate rate constants consisting of four steps. The results obtained from stopped-flow data have shown a substantial influence of the 2-aPu base location on completion of certain reaction steps. Using detailed molecular dynamics simulations of the DNA substrates, we have attributed structural distortions of AP-DNA to realization of specific binding, effective locking, and incision of the damaged DNA. The findings allowed us to accurately discern the step that corresponds to insertion of specific APE1 amino acid residues into the abasic DNA void in the course of stabilization of the precatalytic complex.

Evaluation of borehole geophysical logs and hydraulic tests, phase III, at AIW Frank/Mid-County Mustang Superfund Site, Chester County, Pennsylvania

USGS Publications Warehouse

Sloto, Ronald A.

2001-01-01

Borehole geophysical logs, heatpulse-flowmeter measurements, and aquifer-isolation tests were used to characterize the ground-water-flow system at the AIW Frank/Mid-County Mustang Superfund Site. The site is underlain by fractured carbonate rocks. Caliper, natural-gamma, single-point-resistance, fluid-resistivity, and fluid-temperature logs were run in six wells, and an acoustic borehole televiewer and borehole deviation log was run in one well. The direction and rate of borehole-fluid movement was measured with a high-resolution heatpulse flowmeter for both nonpumping and pumping conditions in four wells. The heatpulse-flowmeter measurements showed flow within the borehole during nonpumping conditions in three of the four wells tested. Flow rates up to 1.4 gallons per minute were measured. Flow was upward in one well and both upward and downward in two wells. Aquifer-isolation (packer) tests were conducted in four wells to determine depth-discrete specific capacity values, to obtain depth-discrete water samples, and to determine the effect of pumping an individual fracture or fracture zone in one well on water levels in nearby wells. Water-level data collected during aquifer-isolation tests were consistent with and confirmed interpretations of borehole geophysical logs and heatpulse-flowmeter measurements. Seven of the 13 fractures identified as water-producing or water-receiving zones by borehole geophysical methods produced water at a rate equal to or greater than 7.5 gallons per minute when isolated and pumped. The specific capacities of isolated fractures range over three orders of magnitude, from 0.005 to 7.1 gallons per minute per foot. Vertical distribution of specific capacity between land surface and 298 feet below land surface is not related to depth. The four highest specific capacities, in descending order, are at depths of 174-198, 90-92, 118-119, and 34-37 feet below land surface.

Mild anastomotic stenosis in patient-specific CABG model may enhance graft patency: a new hypothesis.

PubMed

Huo, Yunlong; Luo, Tong; Guccione, Julius M; Teague, Shawn D; Tan, Wenchang; Navia, José A; Kassab, Ghassan S

2013-01-01

It is well known that flow patterns at the anastomosis of coronary artery bypass graft (CABG) are complex and may affect the long-term patency. Various attempts at optimal designs of anastomosis have not improved long-term patency. Here, we hypothesize that mild anastomotic stenosis (area stenosis of about 40-60%) may be adaptive to enhance the hemodynamic conditions, which may contribute to slower progression of atherosclerosis. We further hypothesize that proximal/distal sites to the stenosis have converse changes that may be a risk factor for the diffuse expansion of atherosclerosis from the site of stenosis. Twelve (12) patient-specific models with various stenotic degrees were extracted from computed tomography images using a validated segmentation software package. A 3-D finite element model was used to compute flow patterns including wall shear stress (WSS) and its spatial and temporal gradients (WSS gradient, WSSG, and oscillatory shear index, OSI). The flow simulations showed that mild anastomotic stenosis significantly increased WSS (>15 dynes · cm(-2)) and decreased OSI (<0.02) to result in a more uniform distribution of hemodynamic parameters inside anastomosis albeit proximal/distal sites to the stenosis have a decrease of WSS (<4 dynes · cm(-2)). These findings have significant implications for graft adaptation and long-term patency.

Effects of fine sediment, hyporheic flow, and spawning site characteristics on survival and development of bull trout embryos

USGS Publications Warehouse

Bowerman, Tracy; Neilson, Bethany; Budy, Phaedra

2014-01-01

Successful spawning is imperative for the persistence of salmonid populations, but relatively little research has been conducted to evaluate factors affecting early life-stage survival for bull trout (Salvelinus confluentus), a threatened char. We conducted a field experiment to assess the relationship between site-specific environmental factors and bull trout embryo survival and fry emergence timing. Survival from egg to hatch was negatively related to percent fine sediment (<1 mm) in the redd and positively related to the strength of downwelling at spawning sites. Survival of eggs to fry emergence was also negatively related to fine sediment, and the best statistical models included additional variables that described the rate of downwelling and intragravel flow within the incubation environment. Fry emerged at an earlier stage in development from redds with high percentages of fine sediment. Increased hydraulic conductivity via redd construction and selection of spawning sites with strong downwelling appear to enhance hyporheic flow rates and bull trout egg survival, but early life-stage success may ultimately be limited by intrusion of fine sediment into the incubation environment.

Leachate migration from an in-situ oil-shale retort near Rock Springs, Wyoming

USGS Publications Warehouse

Glover, Kent C.

1988-01-01

Hydrogeologic factors influencing leachate movement from an in-situ oil-shale retort near Rock Springs, Wyoming, were investigated through models of ground-water flow and solute transport. Leachate, indicated by the conservative ion thiocyanate, has been observed ? mile downgradient from the retort. The contaminated aquifer is part of the Green River Formation and consists of thin, permeable layers of tuff and sandstone interbedded with oil shale. Most solute migration has occurred in an 8-foot sandstone at the top of the aquifer. Ground-water flow in the study area is complexly three dimensional and is characterized by large vertical variations in hydraulic head. The solute-transport model was used to predict the concentration of thiocyanate at a point where ground water discharges to the land surface. Leachate with peak concentrations of thiocyanate--45 milligrams per liter or approximately one-half the initial concentration of retort water--was estimated to reach the discharge area during January 1985. This report describes many of th3 advantages, as well as the problems, of site-specific studies. Data such as the distribution of thin, permeable beds or fractures might introduce an unmanageable degree of complexity to basin-wide studies but can be incorporated readily into site-specific models. Solute migration in the study area occurs primarily in thin, permeable beds rather than in oil-shale strata. Because of this behavior, leachate traveled far greater distances than might otherwise have been expected. The detail possible in site-specific models permits more accurate prediction of solute transport than is possible with basin-wide models. A major problem in site-specific studies is identifying model boundaries that permit the accurate estimation of aquifer properties. If the quantity of water flowing through a study area cannot be determined prior to modeling, the hydraulic conductivity and ground-water velocity will be poorly estimated.

Leachate migration from an in situ oil-shale retort near Rock Springs, Wyoming

USGS Publications Warehouse

Glover, K.C.

1986-01-01

Geohydrologic factors influencing leachate movement from an in situ oil shale retort near Rock Springs, Wyoming, were investigated by developing models of groundwater flow and solute transport. Leachate, indicated by the conservative ion thiocyanate, has been observed 1/2 mi downgradient from the retort. The contaminated aquifer is part of the Green River Formation and consists of thin, permeable layers of tuff and sandstone interbedded with oil shale. Most solute migration has occurred in an 8-ft sandstone at the top of the aquifer. Groundwater flow in the study area is complexly 3-D and is characterized by large vertical variations in hydraulic head. The solute transport model was used to predict the concentration of thiocyanate at a point where groundwater discharges to the land surface. Leachates with peak concentrations of thiocyanate--45 mg/L or approximately one-half the initial concentration of retort water--were estimated to reach the discharge area during January 1985. Advantages as well as the problems of site specific studies are described. Data such as the distribution of thin permeable beds or fractures may introduce an unmanageable degree of complexity to basin-wide studies but can be incorporated readily in site specific models. Solute migration in the study area primarily occurs in thin permeable beds rather than in oil shale strata. Because of this behavior, leachate traveled far greater distances than might otherwise have been expected. The detail possible in site specific models permits more accurate prediction of solute transport than is possible with basin-wide models. A major problem in site specific studies is identifying model boundaries that permit the accurate estimation of aquifer properties. If the quantity of water flowing through a study area cannot be determined prior to modeling, the hydraulic conductivity and groundwater velocity will be estimated poorly. (Author 's abstract)

Which key properties controls the preferential transport in the vadose zone under transient hydrological conditions

NASA Astrophysics Data System (ADS)

Groh, J.; Vanderborght, J.; Puetz, T.; Gerke, H. H.; Rupp, H.; Wollschlaeger, U.; Stumpp, C.; Priesack, E.; Vereecken, H.

2015-12-01

Understanding water flow and solute transport in the unsaturated zone is of great importance for an appropriate land use management strategy. The quantification and prediction of water and solute fluxes through the vadose zone can help to improve management practices in order to limit potential risk on our fresh water resources. Water related solute transport and residence time is strongly affected by preferential flow paths in the soil. Water flow in soils depends on soil properties and site factors (climate or experiment conditions, land use) and are therefore important factors to understand preferential solute transport in the unsaturated zone. However our understanding and knowledge of which on-site properties or conditions define and enhance preferential flow and transport is still poor and mostly limited onto laboratory experimental conditions (small column length and steady state boundary conditions). Within the TERENO SOILCan lysimeter network, which was designed to study the effects of climate change on soil functions, a bromide tracer was applied on 62 lysimeter at eight different test sites between Dec. 2013 and Jan. 2014. The TERENO SOILCan infrastructure offers the unique possibility to study the occurrence of preferential flow and transport of various soil types under different natural transient hydrological conditions and land use (crop, bare and grassland) at eight TERENO SOILCan observatories. Working with lysimeter replicates at each observatory allows defining the spatial variability of preferential transport and flow. Additionally lysimeters in the network were transferred within and between observatories in order to subject them to different rainfall and temperature regimes and enable us to relate the soil type susceptibility of preferential flow and transport not only to site specific physical and land use properties, but also to different transient boundary conditions. Comparison and statistical analysis between preferential flow indicators 5% arrival time and potential key soil properties, site factors and boundary conditions will be presented in order to identify key properties which control the preferential transport in the vadose zone under transient hydrological conditions.

Density-stratified flow events in Great Salt Lake, Utah, USA: implications for mercury and salinity cycling

USGS Publications Warehouse

Naftz, David L.; Carling, Gregory T.; Angeroth, Cory; Freeman, Michael; Rowland, Ryan; Pazmiño, Eddy

2014-01-01

Density stratification in saline and hypersaline water bodies from throughout the world can have large impacts on the internal cycling and loading of salinity, nutrients, and trace elements. High temporal resolution hydroacoustic and physical/chemical data were collected at two sites in Great Salt Lake (GSL), a saline lake in the western USA, to understand how density stratification may influence salinity and mercury (Hg) distributions. The first study site was in a causeway breach where saline water from GSL exchanges with less saline water from a flow restricted bay. Near-surface-specific conductance values measured in water at the breach displayed a good relationship with both flow and wind direction. No diurnal variations in the concentration of dissolved (total and MeHg loadings was observed during periods of elevated salinity. The second study site was located on the bottom of GSL where movement of a high-salinity water layer, referred to as the deep brine layer (DBL), is restricted to a naturally occurring 1.5-km-wide “spillway” structure. During selected time periods in April/May, 2012, wind-induced flow reversals in a railroad causeway breach, separating Gunnison and Gilbert Bays, were coupled with high-velocity flow pulses (up to 55 cm/s) in the DBL at the spillway site. These flow pulses were likely driven by a pressure response of highly saline water from Gunnison Bay flowing into the north basin of Gilbert Bay. Short-term flow reversal events measured at the railroad causeway breach have the ability to move measurable amounts of salt and Hg from Gunnison Bay into the DBL. Future disturbance to the steady state conditions currently imposed by the railroad causeway infrastructure could result in changes to the existing chemical balance between Gunnison and Gilbert Bays. Monitoring instruments were installed at six additional sites in the DBL during October 2012 to assess impacts from any future modifications to the railroad causeway.

When and where does preferential flow matter - from observation to large scale modelling

NASA Astrophysics Data System (ADS)

Weiler, Markus; Leistert, Hannes; Steinbrich, Andreas

2017-04-01

Preferential flow can be of relevance in a wide range of soils and the interaction of different processes and factors are still difficult to assess. As most studies (including our own studies) focusing on the effect of preferential flow are based on relatively high precipitation rates, there is always the question how relevant preferential flow is under natural conditions, considering the site specific precipitation characteristics, the effect of the drying and wetting cycle on the initial soil water condition and shrinkage cracks, the site specific soil properties, soil structure and rock fragments, and the effect of plant roots and soil fauna (e.g. earthworm channels). In order to assess this question, we developed the distributed, process-based model RoGeR (Runoff Generation Research) to include a large number relevant features and processes of preferential flow in soils. The model was developed from a large number of process based research and experiments and includes preferential flow in roots, earthworm channels, along rock fragments and shrinkage cracks. We parameterized the uncalibrated model at a high spatial resolution of 5x5m for the whole state of Baden-Württemberg in Germany using LiDAR data, degree of sealing, landuse, soil properties and geology. As the model is an event based model, we derived typical event based precipitation characteristics based on rainfall duration, mean intensity and amount. Using the site-specific variability of initial soil moisture derived from a water balance model based on the same dataset, we simulated the infiltration and recharge amounts of all event classes derived from the event precipitation characteristics and initial soil moisture conditions. The analysis of the simulation results allowed us to extracts the relevance of preferential flow for infiltration and recharge considering all factors above. We could clearly see a strong effect of the soil properties and land-use, but also, particular for clay rich soils a strong effect of the initial conditions due to the development of soil cracks. Not too surprisingly, the relevance of preferential flow was much lower when considering the whole range of precipitation events as only considering events with a high rainfall intensity. Also, the influence on infiltration and recharge were different. Despite the model can still be improved in particular considering more realistic information about the spatial and temporal variability of preferential flow by soil fauna and plants, the model already shows under what situation we need to be very careful when predicting infiltration and recharge with models considering only longer time steps (daily) or only matrix flow.

Novel Peptide Sequence (“IQ-tag”) with High Affinity for NIR Fluorochromes Allows Protein and Cell Specific Labeling for In Vivo Imaging

PubMed Central

McCarthy, Jason R.; Weissleder, Ralph

2007-01-01

Background Probes that allow site-specific protein labeling have become critical tools for visualizing biological processes. Methods Here we used phage display to identify a novel peptide sequence with nanomolar affinity for near infrared (NIR) (benz)indolium fluorochromes. The developed peptide sequence (“IQ-tag”) allows detection of NIR dyes in a wide range of assays including ELISA, flow cytometry, high throughput screens, microscopy, and optical in vivo imaging. Significance The described method is expected to have broad utility in numerous applications, namely site-specific protein imaging, target identification, cell tracking, and drug development. PMID:17653285

40 CFR 63.7825 - How do I demonstrate initial compliance with the emission limitations that apply to me?

Code of Federal Regulations, 2010 CFR

2010-07-01

... accordance with § 63.7824(a)(1); and (3) For each venturi scrubber subject to the operating limits for pressure drop and scrubber water flow rate in § 63.7790(b)(2), you have established appropriate site-specific operating limits and have a record of the pressure drop and scrubber water flow rate measured...

40 CFR 63.9916 - What test methods and other procedures must I use to establish and demonstrate initial compliance...

Code of Federal Regulations, 2011 CFR

2011-07-01

... compliance with the operating limits? For a wet scrubber subject to operating limits for pressure drop and scrubber water flow rate in § 63.9890(b), you must establish site-specific operating limits according to... monitoring system (CPMS) required in § 63.9920, measure and record the pressure drop and scrubber water flow...

40 CFR 63.9916 - What test methods and other procedures must I use to establish and demonstrate initial compliance...

Code of Federal Regulations, 2010 CFR

2010-07-01

... compliance with the operating limits? For a wet scrubber subject to operating limits for pressure drop and scrubber water flow rate in § 63.9890(b), you must establish site-specific operating limits according to... monitoring system (CPMS) required in § 63.9920, measure and record the pressure drop and scrubber water flow...

40 CFR 63.9916 - What test methods and other procedures must I use to establish and demonstrate initial compliance...

Code of Federal Regulations, 2012 CFR

2012-07-01

... compliance with the operating limits? For a wet scrubber subject to operating limits for pressure drop and scrubber water flow rate in § 63.9890(b), you must establish site-specific operating limits according to... monitoring system (CPMS) required in § 63.9920, measure and record the pressure drop and scrubber water flow...

40 CFR 63.9916 - What test methods and other procedures must I use to establish and demonstrate initial compliance...

Code of Federal Regulations, 2013 CFR

2013-07-01

... compliance with the operating limits? For a wet scrubber subject to operating limits for pressure drop and scrubber water flow rate in § 63.9890(b), you must establish site-specific operating limits according to... monitoring system (CPMS) required in § 63.9920, measure and record the pressure drop and scrubber water flow...

40 CFR 63.9916 - What test methods and other procedures must I use to establish and demonstrate initial compliance...

Code of Federal Regulations, 2014 CFR

2014-07-01

... compliance with the operating limits? For a wet scrubber subject to operating limits for pressure drop and scrubber water flow rate in § 63.9890(b), you must establish site-specific operating limits according to... monitoring system (CPMS) required in § 63.9920, measure and record the pressure drop and scrubber water flow...

40 CFR 63.7825 - How do I demonstrate initial compliance with the emission limitations that apply to me?

Code of Federal Regulations, 2011 CFR

2011-07-01

... accordance with § 63.7824(a)(1); and (3) For each venturi scrubber subject to the operating limits for pressure drop and scrubber water flow rate in § 63.7790(b)(2), you have established appropriate site-specific operating limits and have a record of the pressure drop and scrubber water flow rate measured...

Associations of stream health to altered flow and water temperature in the Sierra Nevada, California

USGS Publications Warehouse

Carlisle, Daren M.; S. Mark Nelson,; May, Jason

2016-01-01

Alteration of streamflow and thermal conditions may adversely affect lotic invertebrate communities, but few studies have assessed these phenomena using indicators that control for the potentially confounding influence of natural variability. We designed a study to assess how flow and thermal alteration influence stream health – as indicated by the condition of invertebrate communities. We studied thirty streams in the Sierra Nevada, California, that span a wide range of hydrologic modification due to storage reservoirs and hydroelectric diversions. Daily water temperature and streamflows were monitored, and basic chemistry and habitat conditions were characterized when invertebrate communities were sampled. Streamflow alteration, thermal alteration, and invertebrate condition were quantified by predicting site-specific natural expectations using statistical models developed using data from regional reference sites. Monthly flows were typically depleted (relative to natural expectations) during fall, winter, and spring. Most hydrologically altered sites experienced cooled thermal conditions in summer, with mean daily temperatures as much 12 °C below natural expectations. The most influential predictor of invertebrate community condition was the degree of alteration of March flows, which suggests that there are key interactions between hydrological and biological processes during this month in Sierra Nevada streams. Thermal alteration was also an important predictor – particularly at sites with the most severe hydrological alteration.

Anisotropy Characterization of Fractured Crystalline Bedrock Using Asymmetric Azimuthal Geoelectric Techniques

NASA Astrophysics Data System (ADS)

Wishart, D. N.; Slater, L. D.

2007-05-01

We examined the potential for geophysical characterization of fractured rock anisotropy by combining asymmetric configurations of azimuthal self potential (ASP) and azimuthal resistivity surveys (ARS), as previously demonstrated in the laboratory, at four field sites in the New Jersey Highlands (NJH) Province. There is a striking correlation between ASP measurements and fracture strike orientations at three of four sites investigated. ARS (electrical) data suggest three sites are overall heterogeneous and the fourth is anisotropic. The characteristic anisotropicity at the fourth site is controlled by a master structure; the NE-SW trending Lake Inez Fault Zone (LIFZ) that strikes at N10ºE and parallels the Wanaque River to the east side of the site. Inferred groundwater flow directions are comparable to the (1) positive polarity (+ve) and magnitude of site-specific SP, (2) local surface drainage, and (3) also conformable with the regional northwest and northeast fracture trend of the NJH. The ASP is ineffective at one heterogeneous site where there is a lack of correlation between ASP and fracture strike data, probably due to poor drainage where there are no distinct paths of flow defined along fractures. Quantitative analysis of the magnitude of the energy observed in the odd and even coefficients of the power spectra of self potential (SP) datasets analyzed using a Fourier series was useful for characterizing anisotropic or heterogeneous flow in the fracture network. For anisotropic flow, the odd coefficients (harmonics) were close to zero, whereas heterogeneous flow resulted in significant energy in the odd coefficients. The employment of asymmetric geoelectric arrays has allowed this quantitative distinction between anisotropy and heterogeneity in fractured bedrock. The results of our study suggest the ability to quantify hydraulic anisotropy with azimuthal self potential and the distinction between electrically-anisotropic and electrically-heterogeneous in the subsurface. These results represent a significant advancement over the use of traditional resistivity arrays in site characterization of fracture- dominated systems.

Estimated Perennial Streams of Idaho and Related Geospatial Datasets

USGS Publications Warehouse

Rea, Alan; Skinner, Kenneth D.

2009-01-01

The perennial or intermittent status of a stream has bearing on many regulatory requirements. Because of changing technologies over time, cartographic representation of perennial/intermittent status of streams on U.S. Geological Survey (USGS) topographic maps is not always accurate and (or) consistent from one map sheet to another. Idaho Administrative Code defines an intermittent stream as one having a 7-day, 2-year low flow (7Q2) less than 0.1 cubic feet per second. To establish consistency with the Idaho Administrative Code, the USGS developed regional regression equations for Idaho streams for several low-flow statistics, including 7Q2. Using these regression equations, the 7Q2 streamflow may be estimated for naturally flowing streams anywhere in Idaho to help determine perennial/intermittent status of streams. Using these equations in conjunction with a Geographic Information System (GIS) technique known as weighted flow accumulation allows for an automated and continuous estimation of 7Q2 streamflow at all points along a stream, which in turn can be used to determine if a stream is intermittent or perennial according to the Idaho Administrative Code operational definition. The selected regression equations were applied to create continuous grids of 7Q2 estimates for the eight low-flow regression regions of Idaho. By applying the 0.1 ft3/s criterion, the perennial streams have been estimated in each low-flow region. Uncertainty in the estimates is shown by identifying a 'transitional' zone, corresponding to flow estimates of 0.1 ft3/s plus and minus one standard error. Considerable additional uncertainty exists in the model of perennial streams presented in this report. The regression models provide overall estimates based on general trends within each regression region. These models do not include local factors such as a large spring or a losing reach that may greatly affect flows at any given point. Site-specific flow data, assuming a sufficient period of record, generally would be considered to represent flow conditions better at a given site than flow estimates based on regionalized regression models. The geospatial datasets of modeled perennial streams are considered a first-cut estimate, and should not be construed to override site-specific flow data.

In situ analysis of dynamic laminar flow extraction using surface-enhanced Raman spectroscopy

NASA Astrophysics Data System (ADS)

Wang, Fei; Wang, Hua-Lin; Qiu, Yang; Chang, Yu-Long; Long, Yi-Tao

2015-12-01

In this study, we performed micro-scale dynamic laminar flow extraction and site-specific in situ chloride concentration measurements. Surface-enhanced Raman spectroscopy was utilized to investigate the diffusion process of chloride ions from an oil phase to a water phase under laminar flow. In contrast to common logic, we used SERS intensity gradients of Rhodamine 6G to quantitatively calculate the concentration of chloride ions at specific positions on a microfluidic chip. By varying the fluid flow rates, we achieved different extraction times and therefore different chloride concentrations at specific positions along the microchannel. SERS spectra from the water phase were recorded at these different positions, and the spatial distribution of the SERS signals was used to map the degree of nanoparticle aggregation. The concentration of chloride ions in the channel could therefore be obtained. We conclude that this method can be used to explore the extraction behaviour and efficiency of some ions or molecules that enhance the SERS intensity in water or oil by inducing nanoparticle aggregation.

High-resolution topography and geomorphology of select archeological sites in Glen Canyon National Recreation Area, Arizona

USGS Publications Warehouse

Collins, Brian D.; Corbett, Skye C.; Sankey, Joel B.; Fairley, Helen C.

2014-01-01

Along the Colorado River corridor between Glen Canyon Dam and Lees Ferry, Arizona, located some 25 km downstream from the dam, archaeological sites dating from 8,000 years before present through the modern era are located within and on top of fluvial and alluvial terraces of the prehistorically undammed river. These terraces are known to have undergone significant erosion and retreat since emplacement of Glen Canyon Dam in 1963. Land managers and policy makers associated with managing the flow of the Colorado River are interested in understanding how the operations of Glen Canyon Dam have affected the archeological sites associated with these terraces and how dam-controlled flows currently interact with other landscape-shaping processes. In 2012, the U.S. Geological Survey initiated a research project in Glen Canyon to study the types and causes of erosion of the terraces. This report provides the first step towards this understanding by presenting comparative analyses on several types of high-resolution topographic data (airborne lidar, terrestrial lidar, and airborne photogrammetry) that can be used in the future to document and analyze changes to terrace-based archaeological sites. Herein, we present topographic and geomorphologic data of four archaeological sites within a 14 km segment of Glen Canyon using each of the three data sources. In addition to comparing each method’s suitability for adequately representing the topography of the sites, we also analyze the data within each site’s context and describe the geomorphological processes responsible for erosion. Our results show that each method has its own strengths and weaknesses, and that terrestrial and airborne lidar are essentially interchangeable for many important topographic characterization and monitoring purposes. However, whereas terrestrial lidar provides enhanced capacity for feature recognition and gully morphology delineation, airborne methods (whether by way of laser or optical sensors) are better suited for reach- and regional-scale mapping. Our site-specific geomorphic analyses of the four archeological sites indicate that their current topographical conditions are a result of different and sometimes competing erosional agents, including bedrock- and terrace-based overland flow, fluvial-induced terrace bank collapse, and alluvial-fan-generated debris flows. Although the influences of anthropogenic-induced erosion from dam operations are not specifically analyzed in this report, we do identify geomorphic settings where dam operations are either more or less likely to affect archeological site stability. This information can be used to assist with future monitoring efforts of these sites and identification of similar conditions for other archeological sites along the Colorado River corridor in Glen Canyon.

NEW TECHNOLOGY AND PEC PROCESS - COLUMBUS, GA

EPA Science Inventory

The presentation will discuss Columbus, Georgia’s Biosolids Flow-through Thermophilic Treatment (BFT3) Process. Site-specific equivalency requires proof. Laboratory-scale pathogen testing must exceed Class A performance criteria while simulating full scale as closely as pos...

Groundwater Data Package for the 2004 Composite Analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thorne, Paul D.

2004-08-11

This report presents data and information that supports the groundwater module. The conceptual model of groundwater flow and transport at the Hanford Site is described and specific information applied in the numerical implementation module is provided.

Estimating pathway-specific contributions to biodegradation in aquifers based on dual isotope analysis: theoretical analysis and reactive transport simulations.

PubMed

Centler, Florian; Heße, Falk; Thullner, Martin

2013-09-01

At field sites with varying redox conditions, different redox-specific microbial degradation pathways contribute to total contaminant degradation. The identification of pathway-specific contributions to total contaminant removal is of high practical relevance, yet difficult to achieve with current methods. Current stable-isotope-fractionation-based techniques focus on the identification of dominant biodegradation pathways under constant environmental conditions. We present an approach based on dual stable isotope data to estimate the individual contributions of two redox-specific pathways. We apply this approach to carbon and hydrogen isotope data obtained from reactive transport simulations of an organic contaminant plume in a two-dimensional aquifer cross section to test the applicability of the method. To take aspects typically encountered at field sites into account, additional simulations addressed the effects of transverse mixing, diffusion-induced stable-isotope fractionation, heterogeneities in the flow field, and mixing in sampling wells on isotope-based estimates for aerobic and anaerobic pathway contributions to total contaminant biodegradation. Results confirm the general applicability of the presented estimation method which is most accurate along the plume core and less accurate towards the fringe where flow paths receive contaminant mass and associated isotope signatures from the core by transverse dispersion. The presented method complements the stable-isotope-fractionation-based analysis toolbox. At field sites with varying redox conditions, it provides a means to identify the relative importance of individual, redox-specific degradation pathways. © 2013.

Topographic change detection at select archeological sites in Grand Canyon National Park, Arizona, 2007–2010

USGS Publications Warehouse

Collins, Brian D.; Corbett, Skye C.; Fairley, Helen C.; Minasian, Diane L.; Kayen, Robert; Dealy, Timothy P.; Bedford, David R.

2012-01-01

Human occupation in Grand Canyon, Arizona, dates from at least 11,000 years before present to the modern era. For most of this period, the only evidence of human occupation in this iconic landscape is provided by archeological sites. Because of the dynamic nature of this environment, many archeological sites are subject to relatively rapid topographic change. Quantifying the extent, magnitude, and cause of such change is important for monitoring and managing these archeological sites. Such quantification is necessary to help inform the continuing debate on whether and how controlled releases from Glen Canyon Dam, located immediately upstream of Grand Canyon National Park, are affecting site erosion rates, artifact transport, and archeological resource preservation along the Colorado River in Grand Canyon. Although long-term topographic change resulting from a variety of natural processes is inherent in the Grand Canyon region, continued erosion of archeological sites threatens both the archeological resources and our future ability to study evidence of past cultural habitation. Thus, this subject is of considerable interest to National Park Service managers and other stakeholders in the Glen Canyon Dam Adaptive Management Program. Understanding the causes and effects of archeological site erosion requires a knowledge of several factors, including the location, timing, and magnitude of the changes occurring in relation to archeological resources, the rates of change, and the relative contribution of potential causes. These potential causes include sediment depletion associated with managed flows from Glen Canyon Dam, site-specific weather and overland flow patterns, visitor impacts, and long-term regional climate change. To obtain this information, highly accurate, spatially specific data are needed from sites undergoing change. Using terrestrial lidar techniques, and building upon three previous surveys of archeological sites performed in 2006 and 2007, we collected two new datasets in April and September 2010 and processed and improved upon existing methods to generate high-accuracy (3 to 5 cm vertical change threshold) topographic change-detection maps for 10 survey areas encompassing 9 archeological sites along the Colorado River corridor. We also used terrestrial lidar techniques to investigate several other metrics for studying archeological site stability, including monitoring cultural structures and artifacts and remotely measuring cryptobiotic soil crust areas. Our topographic change results indicate that 9 of 10 survey areas showed signs of either erosion, deposition, or both during the 2007–2010 time interval and that these changes can be linked to a variety of geomorphic processes, primarily overland flow gullying and aeolian sand transport. In several cases, large (>50 cm) vertical change occurred, and in one case, more than 100 m3 of sediment was eroded. Further, for all sites monitored throughout the river corridor during this time period, the overall signal was related to erosion rather than deposition. These results highlight the potential for rapid archeological site change in Grand Canyon. Whereas the topographic change results presented herein provide the highest level of change detection yet performed on entire archeological sites in Grand Canyon, additional work in combining these results with site-specific weather, hydrology, and geomorphology data is needed to provide a more thorough understanding of the causes of the documented topographic changes. Linking lidar-derived measurements of topographic changes with these other data sources should provide land managers with a scientific basis for making management decisions regarding archeological resources in Grand Canyon National Park and assist in answering open questions regarding the influence that sediment-depleted flows from Glen Canyon Dam have on archeological site stability.

Base-flow data in the Arnold Air Force Base area, Tennessee, June and October 2002

USGS Publications Warehouse

Robinson, John A.; Haugh, Connor J.

2004-01-01

Arnold Air Force Base (AAFB) occupies about 40,000 acres in Coffee and Franklin Counties, Tennessee. The primary mission of AAFB is to support the development of aerospace systems. This mission is accomplished through test facilities at Arnold Engineering Development Center (AEDC), which occupies about 4,000 acres in the center of AAFB. Base-flow data including discharge, temperature, and specific conductance were collected for basins in and near AAFB during high base-flow and low base-flow conditions. Data representing high base-flow conditions from 109 sites were collected on June 3 through 5, 2002, when discharge measurements at sites with flow ranged from 0.005 to 46.4 ft3/s. Data representing low base-flow conditions from 109 sites were collected on October 22 and 23, 2002, when discharge measurements at sites with flow ranged from 0.02 to 44.6 ft3/s. Discharge from the basin was greater during high base-flow conditions than during low base-flow conditions. In general, major tributaries on the north side and southeastern side of the study area (Duck River and Bradley Creek, respectively) had the highest flows during the study. Discharge data were used to categorize stream reaches and sub-basins. Stream reaches were categorized as gaining, losing, wet, dry, or unobserved for each base-flow measurement period. Gaining stream reaches were more common during the high base-flow period than during the low base-flow period. Dry stream reaches were more common during the low base-flow period than during the high base-flow period. Losing reaches were more predominant in Bradley Creek and Crumpton Creek. Values of flow per square mile for the study area of 0.55 and 0.37 (ft3/s)/mi2 were calculated using discharge data collected on June 3 through 5, 2002, and October 22 and 23, 2002, respectively. Sub-basin areas with surplus or deficient flow were defined within the basin. Drainage areas for each stream measurement site were delineated and measured from topographic maps. Change in flow per square mile for each sub-basin was calculated using data from each base-flow measurement period. The calculated values were used to define the areas of surplus or deficient flow for high and low base-flow conditions. Many areas of deficient flow were present throughout the study area under high and low base-flow conditions. Most areas of deficient flow were in the headwater basins. Fewer areas of surplus flow were present under low base-flow conditions than during the high base-flow conditions. The flow per square mile for each major tributary basin in the study area also was calculated. The values of flow per square mile for the Dry Creek, Spring Creek, and Wiley Creek basins were greatest under both high and low base-flow conditions.

Improving catchment discharge predictions by inferring flow route contributions from a nested-scale monitoring and model setup

NASA Astrophysics Data System (ADS)

van der Velde, Y.; Rozemeijer, J. C.; de Rooij, G. H.; van Geer, F. C.; Torfs, P. J. J. F.; de Louw, P. G. B.

2011-03-01

Identifying effective measures to reduce nutrient loads of headwaters in lowland catchments requires a thorough understanding of flow routes of water and nutrients. In this paper we assess the value of nested-scale discharge and groundwater level measurements for the estimation of flow route volumes and for predictions of catchment discharge. In order to relate field-site measurements to the catchment-scale an upscaling approach is introduced that assumes that scale differences in flow route fluxes originate from differences in the relationship between groundwater storage and the spatial structure of the groundwater table. This relationship is characterized by the Groundwater Depth Distribution (GDD) curve that relates spatial variation in groundwater depths to the average groundwater depth. The GDD-curve was measured for a single field site (0.009 km2) and simple process descriptions were applied to relate groundwater levels to flow route discharges. This parsimonious model could accurately describe observed storage, tube drain discharge, overland flow and groundwater flow simultaneously with Nash-Sutcliff coefficients exceeding 0.8. A probabilistic Monte Carlo approach was applied to upscale field-site measurements to catchment scales by inferring scale-specific GDD-curves from the hydrographs of two nested catchments (0.4 and 6.5 km2). The estimated contribution of tube drain effluent (a dominant source for nitrates) decreased with increasing scale from 76-79% at the field-site to 34-61% and 25-50% for both catchment scales. These results were validated by demonstrating that a model conditioned on nested-scale measurements improves simulations of nitrate loads and predictions of extreme discharges during validation periods compared to a model that was conditioned on catchment discharge only.

Stoichiometry of maltodextrin-binding sites in LamB, an outer membrane protein from Escherichia coli.

PubMed Central

Gehring, K; Cheng, C H; Nikaido, H; Jap, B K

1991-01-01

We have directly measured the stoichiometry of maltodextrin-binding sites in LamB. Scatchard plots and computer fitting of flow dialysis (rate-of-dialysis) experiments clearly establish three independent binding sites per LamB trimer, with a dissociation constant of approximately 60 microM for maltoheptaose. The current model for LamB's function as a specific pore is discussed with respect to the symmetry in LamB's kinetic properties and the implications of our results. Images PMID:2001992

Water-quality data from five Oregon stream basins

USGS Publications Warehouse

Miller, Timothy L.

1979-01-01

The U.S. Geological Survey collected water-quality data in five Oregon stream basins during summer low-flow conditions in 1977 and 1978. During the two sampling periods, a total of 18 different sites were sampled. Several sites were sampled twice in 1977, and some sites were sampled in both 1977 and 1978. Included in the sampling were diel trace of dissolved oxygen, temperature, specific conductance, pH, and solar radiation. In addition, periphyton and benthic invertebrate samples were collected and identified.

Multi-scale groundwater flow modeling during temperate climate conditions for the safety assessment of the proposed high-level nuclear waste repository site at Forsmark, Sweden

NASA Astrophysics Data System (ADS)

Joyce, Steven; Hartley, Lee; Applegate, David; Hoek, Jaap; Jackson, Peter

2014-09-01

Forsmark in Sweden has been proposed as the site of a geological repository for spent high-level nuclear fuel, to be located at a depth of approximately 470 m in fractured crystalline rock. The safety assessment for the repository has required a multi-disciplinary approach to evaluate the impact of hydrogeological and hydrogeochemical conditions close to the repository and in a wider regional context. Assessing the consequences of potential radionuclide releases requires quantitative site-specific information concerning the details of groundwater flow on the scale of individual waste canister locations (1-10 m) as well as details of groundwater flow and composition on the scale of groundwater pathways between the facility and the surface (500 m to 5 km). The purpose of this article is to provide an illustration of multi-scale modeling techniques and the results obtained when combining aspects of local-scale flows in fractures around a potential contaminant source with regional-scale groundwater flow and transport subject to natural evolution of the system. The approach set out is novel, as it incorporates both different scales of model and different levels of detail, combining discrete fracture network and equivalent continuous porous medium representations of fractured bedrock.

Repeated cycles of electrical stimulation decrease vasoconstriction and axon-reflex vasodilation to noradrenaline in the human forearm

PubMed Central

Drummond, Peter D

2007-01-01

What is already known about this subject Repeated cycles of electrical stimulation inhibit cutaneous vasoconstriction to noradrenaline, but the mechanism is unknown. Investigating this is important because peripheral electrical stimulation is useful for pain modulation and appears to assist cutaneous wound healing. What this study adds Intermittent, brief electrical stimulation of the forearm over a 10-day period inhibited vasoconstriction and axon-reflex vasodilation to noradrenaline, but did not affect vasoconstriction to vasopressin or axon-reflex vasodilation to histamine. Thus, electrical stimulation may evoke a specific reduction in responsiveness to noradrenaline. Aim To investigate whether desensitization to the vasomotor effects of noradrenaline is a specific effect of electrical stimulation. Methods Three sites on the forearm of 10 healthy volunteers were stimulated with 0.2 mA direct current for 2 min twice daily for 10 days. Noradrenaline and histamine were then displaced from ring-shaped iontophoresis chambers into two of the pretreated sites and two untreated sites on the contralateral forearm. Axon-reflex vasodilation was measured from the centre of the ring described by the iontophoresis chamber with a laser Doppler flowmeter. One or two days later, noradrenaline and vasopressin were introduced into pretreated and untreated sites by iontophoresis, and vasoconstriction at sites of administration was measured in the heated forearm. Results The pretreatment blocked vasoconstriction to noradrenaline [median increase in flow 1%, interquartile range (IR) −41 to 52%; median decrease at the untreated site 53%, IR. −70 to −10%; P < 0.05], but did not block vasoconstriction to vasopressin (median decrease 42% at the untreated site and 45% at the pretreated site). Axon-reflex vasodilation to noradrenaline was diminished at the pretreated site (median increase in flow 33%, IR 2–321%; untreated site 247%, IR 31–1087%; P < 0.05). However, axon-reflex vasodilation to histamine did not differ significantly between the pretreated site (median increase 1085%) and the untreated site (median increase 1345%). Conclusions The conditioning pretreatment appears to evoke a specific decrease in responsiveness to noradrenaline. Repeated cycles of electrical stimulation may downregulate neural and vascular responses to noradrenaline by repetitively activating cutaneous sympathetic nerve fibres. PMID:17441931

Hydrogeologic Factors Affecting Base-Flow Yields in the Jefferson County Area, West Virginia, October-November 2007

USGS Publications Warehouse

Evaldi, Ronald D.; Paybins, Katherine S.; Kozar, Mark D.

2009-01-01

Base-flow yields at approximately the annual 75-percent-duration flow were determined for watersheds in the Jefferson County area, WV, from stream-discharge measurements made during October 31 to November 2, 2007. Five discharge measurements of Opequon Creek defined increased flow from 29,000,000 gallons per day (gal/d) at Carters Ford to 51,400,000 gal/d near Vanville. No flow was observed at 45 of 110 additional stream sites inspected, and discharge at the 65 flowing stream sites ranged from 1,940 to 17,100,000 gallons per day (gal/d). Discharge at 28 springs ranged from no flow to 2,430,000 gal/d. Base-flow yields were computed as the change in stream-channel discharge between measurement sites divided by the change in drainage area between the sites. Yields were negative for losing (influent) channel reaches and positive for gaining (effluent) reaches. Channels in 14 watersheds were determined to have lost flow ranging from -9.6 to -1,770 gallons per day per acre (gal/d/acre). Channels in 51 watersheds were determined to have gained flow ranging from 3.4 to 235,000 gal/d/acre. Water temperature at the stream sites ranged from 5.0 to 16.3 deg C (quarry pumpage), and specific conductance ranged from 51 to 881 microsiemens per centimeter (uS/cm). Water temperature at the springs ranged from 11.5 to 15.0 deg C, and specific conductance ranged from 22 to 958 uS/cm. Large springs in some watersheds in western Jefferson County are adjacent to other watersheds with little or no surface-water discharge; this is probably the result of interbasin transfer of groundwater along faults that dissect the area. Most watersheds located adjacent to the Potomac River in northeastern Jefferson County were not flowing during this study; this is most likely because the Potomac River is deeply incised, and groundwater flows directly to it rather than to the local stream systems in these areas. Except for one watershed with a yield of 651 gal/d/acre, no watersheds in northeastern Jefferson County yielded more than 305 gal/d/acre. Base-flow yields of several watersheds in south-central Jefferson County exceeded 400 gal/d/acre, and the effect of the Shenadoah River on base flows in the watershed appears to be less than that of the Potomac River in the northeastern part of the county. In the southeastern part of the county, because of steep relief and low-permeability bedrock, several streams were not flowing at the time of the study, and yields from all flowing streams were all less than 100 gal/d/acre. On the basis of historical data from 1961 through 2008, the mean and median depths to groundwater in 213 wells in western Jefferson County were 33.4 and 29.3 ft, respectively. Mean and median depths to groundwater in 69 wells in the northeastern county area were 56.0 and 55.0 ft below land surface, respectively. However, mean and median depths to groundwater in 28 wells within 1.5 miles of the Potomac River were 70.0 and 71.3 ft below land surface, respectively. Mean and median depths to groundwater in 108 wells in the south-central county area were 53.9 and 52.8 ft below land surface, respectively. Mean and median depths to groundwater of 26 wells in the southeastern county area were 86.6 and 59.5 ft below land surface, respectively.

Towards Direct Measurement of Ultrafast Vibrational Energy Flow in Proteins

NASA Astrophysics Data System (ADS)

Müller-Werkmeister, Henrike M.; Essig, Martin; Durkin, Patrick; Budisa, Nediljko; Bredenbeck, Jens

Vibrational energy transfer (VET) within a molecule can be investigated in great detail with ultrafast IR spectroscopy. We report on progress towards mapping of VET pathways in proteins using unnatural amino acids as site-specific probes.

Monitoring and Evaluation of Environmental Flow Prescriptions for Five Demonstration Sites of the Sustainable Rivers Project

USGS Publications Warehouse

Konrad, Christopher P.

2010-01-01

The Nature Conservancy has been working with U.S. Army Corps of Engineers (Corps) through the Sustainable Rivers Project (SRP) to modify operations of dams to achieve ecological objectives in addition to meeting the authorized purposes of the dams. Modifications to dam operations are specified in terms of environmental flow prescriptions that quantify the magnitude, duration, frequency, and seasonal timing of releases to achieve specific ecological outcomes. Outcomes of environmental flow prescriptions implemented from 2002 to 2008 have been monitored and evaluated at demonstration sites in five rivers: Green River, Kentucky; Savannah River, Georgia/South Carolina; Bill Williams River, Arizona; Big Cypress Creek, Texas; and Middle Fork Willamette River, Oregon. Monitoring and evaluation have been accomplished through collaborative partnerships of federal and state agencies, universities, and nongovernmental organizations.

The Sim-SEQ Project: Comparison of Selected Flow Models for the S-3 Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mukhopadhyay, Sumit; Doughty, Christine A.; Bacon, Diana H.

Sim-SEQ is an international initiative on model comparison for geologic carbon sequestration, with an objective to understand and, if possible, quantify model uncertainties. Model comparison efforts in Sim-SEQ are at present focusing on one specific field test site, hereafter referred to as the Sim-SEQ Study site (or S-3 site). Within Sim-SEQ, different modeling teams are developing conceptual models of CO2 injection at the S-3 site. In this paper, we select five flow models of the S-3 site and provide a qualitative comparison of their attributes and predictions. These models are based on five different simulators or modeling approaches: TOUGH2/EOS7C, STOMP-CO2e,more » MoReS, TOUGH2-MP/ECO2N, and VESA. In addition to model-to-model comparison, we perform a limited model-to-data comparison, and illustrate how model choices impact model predictions. We conclude the paper by making recommendations for model refinement that are likely to result in less uncertainty in model predictions.« less

Drilling and completion specifications for CA series multilevel piezometers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Clawson, T.S.

1986-08-01

CX Series multilevel piezometer boreholes will provide information on hydraulic heads in the Rosalia, Sentinel Gap, Ginkgo, Rocky Coulee, Cohassett, Birkett, and Umtanum flow tops. The borehole sites will be located adjacent to the reference repository location. In addition, information from the boreholes will provide input data used to determine horizontal and vertical flow rates, and identify possible geologic structures. This specification includes details for drilling, piezometer design, hydrologic testing, and hydrochemical sampling of the boreholes. It includes drilling requirements, design, and installation procedures for the series piezometer nests, intervals selected for head monitoring and schedules for drilling and piezometermore » installation. Specific drilling and piezometer installation specifications for boreholes DC-24CX and DC-25CX are also included. 27 refs., 5 figs., 3 tabs.« less

Tolerance design of patient-specific range QA using the DMAIC framework in proton therapy.

PubMed

Rah, Jeong-Eun; Shin, Dongho; Manger, Ryan P; Kim, Tae Hyun; Oh, Do Hoon; Kim, Dae Yong; Kim, Gwe-Ya

2018-02-01

To implement the DMAIC (Define-Measure-Analyze-Improve-Control) can be used for customizing the patient-specific QA by designing site-specific range tolerances. The DMAIC framework (process flow diagram, cause and effect, Pareto chart, control chart, and capability analysis) were utilized to determine the steps that need focus for improving the patient-specific QA. The patient-specific range QA plans were selected according to seven treatment site groups, a total of 1437 cases. The process capability index, C pm was used to guide the tolerance design of patient site-specific range. For prostate field, our results suggested that the patient range measurements were capable at the current tolerance level of ±1 mm in clinical proton plans. For other site-specific ranges, we analyzed that the tolerance tends to be overdesigned to insufficient process capability calculated by the patient-specific QA data. The customized tolerances were calculated for treatment sites. Control charts were constructed to simulate the patient QA time before and after the new tolerances were implemented. It is found that the total simulation QA time was decreased on average of approximately 20% after establishing new site-specific range tolerances. We simulated the financial impact of this project. The QA failure for whole process in proton therapy would lead up to approximately 30% increase in total cost. DMAIC framework can be used to provide an effective QA by setting customized tolerances. When tolerance design is customized, the quality is reasonably balanced with time and cost demands. © 2017 American Association of Physicists in Medicine.

Low-flow characteristics of streams in Virginia

USGS Publications Warehouse

Hayes, Donald C.

1991-01-01

Streamflow data were collected and low-flow characteristics computed for 715 gaged sites in Virginia Annual minimum average 7-consecutive-day flows range from 0 to 2,195 cubic feet per second for a 2-year recurrence interval and from 0 to 1,423 cubic feet per second for a 10-year recurrence interval. Drainage areas range from 0.17 to 7,320 square miles. Existing and discontinued gaged sites are separated into three types: long-term continuous-record sites, short-term continuous-record sites, and partial-record sites. Low-flow characteristics for long-term continuous-record sites are determined from frequency curves of annual minimum average 7-consecutive-day flows . Low-flow characteristics for short-term continuous-record sites are estimated by relating daily mean base-flow discharge values at a short-term site to concurrent daily mean discharge values at nearby long-term continuous-record sites having similar basin characteristics . Low-flow characteristics for partial-record sites are estimated by relating base-flow measurements to daily mean discharge values at long-term continuous-record sites. Information from the continuous-record sites and partial-record sites in Virginia are used to develop two techniques for estimating low-flow characteristics at ungaged sites. A flow-routing method is developed to estimate low-flow values at ungaged sites on gaged streams. Regional regression equations are developed for estimating low-flow values at ungaged sites on ungaged streams. The flow-routing method consists of transferring low-flow characteristics from a gaged site, either upstream or downstream, to a desired ungaged site. A simple drainage-area proration is used to transfer values when there are no major tributaries between the gaged and ungaged sites. Standard errors of estimate for108 test sites are 19 percent of the mean for estimates of low-flow characteristics having a 2-year recurrence interval and 52 percent of the mean for estimates of low-flow characteristics having a 10-year recurrence interval . A more complex transfer method must be used when major tributaries enter the stream between the gaged and ungaged sites. Twenty-four stream networks are analyzed, and predictions are made for 84 sites. Standard errors of estimate are 15 percent of the mean for estimates of low-flow characteristics having a 2-year recurrence interval and 22 percent of the mean for estimates of low-flow characteristics having a 10-year recurrence interval. Regional regression equations were developed for estimating low-flow values at ungaged sites on ungaged streams. The State was divided into eight regions on the basis of physiography and geographic grouping of the residuals computed in regression analyses . Basin characteristics that were significant in the regression analysis were drainage area, rock type, and strip-mined area. Standard errors of prediction range from 60 to139 percent for estimates of low-flow characteristics having a 2-year recurrence interval and 90 percent to 172 percent for estimates of low-flow characteristics having a 10-year recurrence interval.

Surface- and ground-water characteristics in the Upper Truckee River and Trout Creek watersheds, South Lake Tahoe, California and Nevada, July-December 1996

USGS Publications Warehouse

Rowe, T.G.; Allander, Kip K.

2000-01-01

The Upper Truckee River and Trout Creek watersheds, South Lake Tahoe, California and Nevada, were studied from July to December 1996 to develop a better understanding of the relation between surface water and ground water. Base flows at 63 streamflow sites were measured in late September 1996 in the Upper Truckee River and Trout Creek watersheds. Most reaches of the main stem of the Upper Truckee River and Trout Creek had gaining or steady flows, with one losing reach in the mid-section of each stream. Twenty-seven of the streamflow sites measured in the Upper Truckee River watershed were on 14 tributaries to the main stem of the Upper Truckee River. Sixteen of the 40 streamflow sites measured in the Upper Truckee River watershed had no measurable flow. Streamflow in Upper Truckee River watershed ranged from 0 to 11.6 cubic feet per second (ft3/s). The discharge into Lake Tahoe from the Upper Truckee River was 11.6 ft3/s, of which, 40 percent of the flow was from ground-water discharge into the main stem, 40 percent was from tributary inflows, and the remaining 20 percent was the beginning flow. Gains from or losses to ground water along streams ranged from a 1.4 cubic feet per second per mile (ft3/s/mi) gain to a 0.5 ft3/s/mi loss along the main stem. Fourteen of the streamflow sites measured in the Trout Creek watershed were on eight tributaries to the main stem of Trout Creek. Of the 23 streamflow sites measured in the Trout Creek watershed, only one site had no flow. Flows in the Trout Creek watershed ranged from zero to 23.0 ft3/s. Discharge into Lake Tahoe from Trout Creek was 23.0 ft3/s, of which, about 5 percent of the flow was from ground-water discharge into the main stem, 75 percent was from tributary inflows, and the remaining 20 percent was the beginning flow. Ground-water seepage rates ranged from a 1.4 ft3/s/mi gain to a 0.9 ft3/s/mi loss along the main stem. Specific conductances measured during the seepage run in September 1996 increased in a downstream direction in the main stem of the Upper Truckee River and remained relatively constant in the main stem of Trout Creek. Water temperatures measured during the seepage run also increased in a downstream direction in both watersheds. Depths to ground water measured at 62 wells in the study area were used with the results of the seepage run to produce a water-level map in the Upper Truckee River and Trout Creek watersheds. Ground-water levels ranged from 1.3 to 69.8 feet below land surface. In the upper sections of the watersheds ground-water flow is generally toward the main stems of Upper Truckee River and Trout Creek, whereas in the lower sections, ground-water flow generally parallels the two streams and flows toward Lake Tahoe. The altitude of ground water between Lake Tahoe and Highway 50 was nearly the same as the lake-surface altitude from July to November 1996. This suggests ground-water discharge beneath the Upper Truckee River and Trout Creek drainages directly to Lake Tahoe was minimal and that much of the ground-water discharge was to the channels of the Upper Truckee River and Trout Creek upstream from Highway 50. Hydraulic gradients ranged from near zero to 1,400 feet per mile. Samples were collected at six surface-water-quality and eight ground-water-quality sites from July through mid-December 1996. Specific conductance of the ground-water-quality sites was higher than that of the surface-water-quality sites. Water temperature and pH median values were similar between ground-water-quality and surface-water-quality sites but ground water had greater variation in pH and surface water had greater variation in water temperature. Ground-water nutrient concentrations were generally higher than those in streams except for bioreactive iron.

A Numerical Study for Groundwater Flow, Heat and Solute Transport Associated with Operation of Open-loop Geothermal System in Alluvial Aquifer

NASA Astrophysics Data System (ADS)

Park, D. K.; Bae, G. O.; Lee, K. K.

2014-12-01

The open-loop geothermal system directly uses a relatively stable temperature of groundwater for cooling and heating in buildings and thus has been known as an eco-friendly, energy-saving, and cost-efficient technique. The facility for this system was installed at a site located near Paldang-dam in Han-river, Korea. Because of the well-developed alluvium, the site might be appropriate to application of this system requiring extraction and injection of a large amount of groundwater. A simple numerical experiment assuming various hydrogeologic conditions demonstrated that regional groundwater flow direction was the most important factor for efficient operation of facility in this site having a highly permeable layer. However, a comparison of river stage data and groundwater level measurements showed that the daily and seasonal controls of water level at Paldang-dam have had a critical influence on the regional groundwater flow in the site. Moreover, nitrate concentrations measured in the monitoring wells gave indication of the effect of agricultural activities around the facility on the groundwater quality. The facility operation, such as extraction and injection of groundwater, will obviously affect transport of the agricultural contaminant and, maybe, it will even cause serious problems in the normal operation. Particularly, the high-permeable layer in this aquifer must be a preferential path for quick spreadings of thermal and contaminant plumes. The objective of this study was to find an efficient, safe and stable operation plan of the open-loop geothermal system installed in this site having the complicated conditions of highly permeable layer, variable regional groundwater flow, and agricultural contamination. Numerical simulations for groundwater flow, heat and solute transport were carried out to analyze all the changes in groundwater level and flow, temperature, and quality according to the operation, respectively. Results showed that an operation plan for only the thermal efficiency of system cannot be the best in aspect of safe and stable operation related to groundwater quality. All these results concluded that it is essential to understand various and site-specific conditions of the site in a more integrated approach for the successful application of the open-loop geothermal system.

Tidal reversal and flow velocities using temperature and specific conductance in a small wetland creek

NASA Astrophysics Data System (ADS)

Eaton, Timothy T.

2016-11-01

Characterizing flow dynamics in very small tidal creeks is complicated and not well suited to methods developed for upland streams or coastal estuaries, due to low flows, bidirectionality and shallow waters. Simple instrumentation enables thermal and salinity signals to be used to observe flow directions and estimate velocities in these settings. Using multiple inexpensive sensors over 500 m along a tidally influenced wetland creek, I demonstrate how advection of temperature and specific conductance pulses reveal flood and ebb tides and the temporary reversal of flow by warmer, estuarine water from the receiving embayment. The sequential rise of temperature upstream was most evident under hot and dry conditions, after daily peak air temperatures of 25 °C or above, and was subdued or disrupted under cooler or rainy conditions in summertime. Changes in specific conductance at successive sites upstream were less susceptible to environmental influences and confirm tidal flood velocity of between 0.07 and 0.37 m/s. The tidally-induced flow reversal suggests that periodic high tide conditions can interfere with rapid dispersal of pollution discharges, such as from the combined sewer overflow (CSO) located upstream of the studied creek reach. This low-cost approach of temperature and specific conductance sensing in vegetated coastal wetlands where access, precise elevation control and creek discharge measurements are difficult, provides a simple way of tracking water masses when sufficient contrast exists between water sources.

Use of taxon-specific competitive-priming PCR to study host specificity, hybridization, and intergroup gene flow in intersterility groups of Heterobasidion annosum

Treesearch

M. Garbelotto; A. Ratcliff; T.D. Bruns; F.W. Cobb; W.J. Otrosina

1996-01-01

Two intersterility groups (ISGs) of the forest pathogen Heterobasidion annosum are found in California: S and P.We devised a polymerase chain reaction (PCR) method called taxon- specific competitive-priming (TSCP) PCR to differentiate the two ISGs.Using TSCP-PCR, we typed 537 live isolates and dry basidiocarps from 204 trees and 114 stumps from 60 sites in eight...

Deep brain stimulation reveals emotional impact processing in ventromedial prefrontal cortex.

PubMed

Gjedde, Albert; Geday, Jacob

2009-12-07

We tested the hypothesis that modulation of monoaminergic tone with deep-brain stimulation (DBS) of subthalamic nucleus would reveal a site of reactivity in the ventromedial prefrontal cortex that we previously identified by modulating serotonergic and noradrenergic mechanisms by blocking serotonin-noradrenaline reuptake sites. We tested the hypothesis in patients with Parkinson's disease in whom we had measured the changes of blood flow everywhere in the brain associated with the deep brain stimulation of the subthalamic nucleus. We determined the emotional reactivity of the patients as the average impact of emotive images rated by the patients off the DBS. We then searched for sites in the brain that had significant correlation of the changes of blood flow with the emotional impact rated by the patients. The results indicate a significant link between the emotional impact when patients are not stimulated and the change of blood flow associated with the DBS. In subjects with a low emotional impact, activity measured as blood flow rose when the electrode was turned on, while in subjects of high impact, the activity at this site in the ventromedial prefrontal cortex declined when the electrode was turned on. We conclude that changes of neurotransmission in the ventromedial prefrontal cortex had an effect on the tissue that depends on changes of monoamine concentration interacting with specific combinations of inhibitory and excitatory monoamine receptors.

Effects of linking a soil-water-balance model with a groundwater-flow model

USGS Publications Warehouse

Stanton, Jennifer S.; Ryter, Derek W.; Peterson, Steven M.

2013-01-01

A previously published regional groundwater-flow model in north-central Nebraska was sequentially linked with the recently developed soil-water-balance (SWB) model to analyze effects to groundwater-flow model parameters and calibration results. The linked models provided a more detailed spatial and temporal distribution of simulated recharge based on hydrologic processes, improvement of simulated groundwater-level changes and base flows at specific sites in agricultural areas, and a physically based assessment of the relative magnitude of recharge for grassland, nonirrigated cropland, and irrigated cropland areas. Root-mean-squared (RMS) differences between the simulated and estimated or measured target values for the previously published model and linked models were relatively similar and did not improve for all types of calibration targets. However, without any adjustment to the SWB-generated recharge, the RMS difference between simulated and estimated base-flow target values for the groundwater-flow model was slightly smaller than for the previously published model, possibly indicating that the volume of recharge simulated by the SWB code was closer to actual hydrogeologic conditions than the previously published model provided. Groundwater-level and base-flow hydrographs showed that temporal patterns of simulated groundwater levels and base flows were more accurate for the linked models than for the previously published model at several sites, particularly in agricultural areas.

The gravity of pollination: integrating at-site features into spatial analysis of contemporary pollen movement.

PubMed

DiLeo, Michelle F; Siu, Jenna C; Rhodes, Matthew K; López-Villalobos, Adriana; Redwine, Angela; Ksiazek, Kelly; Dyer, Rodney J

2014-08-01

Pollen-mediated gene flow is a major driver of spatial genetic structure in plant populations. Both individual plant characteristics and site-specific features of the landscape can modify the perceived attractiveness of plants to their pollinators and thus play an important role in shaping spatial genetic variation. Most studies of landscape-level genetic connectivity in plants have focused on the effects of interindividual distance using spatial and increasingly ecological separation, yet have not incorporated individual plant characteristics or other at-site ecological variables. Using spatially explicit simulations, we first tested the extent to which the inclusion of at-site variables influencing local pollination success improved the statistical characterization of genetic connectivity based upon examination of pollen pool genetic structure. The addition of at-site characteristics provided better models than those that only considered interindividual spatial distance (e.g. IBD). Models parameterized using conditional genetic covariance (e.g. population graphs) also outperformed those assuming panmixia. In a natural population of Cornus florida L. (Cornaceae), we showed that the addition of at-site characteristics (clumping of primary canopy opening above each maternal tree and maternal tree floral output) provided significantly better models describing gene flow than models including only between-site spatial (IBD) and ecological (isolation by resistance) variables. Overall, our results show that including interindividual and local ecological variation greatly aids in characterizing landscape-level measures of contemporary gene flow. © 2014 John Wiley & Sons Ltd.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ewy, Ann; Heim, Kenneth J.; McGonigal, Sean T.

A comparative groundwater hydrogeologic modeling analysis is presented herein to simulate potential contaminant migration pathways in a sole source aquifer in Nassau County, Long Island, New York. The source of contamination is related to historical operations at the Sylvania Corning Plant ('Site'), a 9.49- acre facility located at 70, 100 and 140 Cantiague Rock Road, Town of Oyster Bay in the westernmost portion of Hicksville, Long Island. The Site had historically been utilized as a nuclear materials manufacturing facility (e.g., cores, slug, and fuel elements) for reactors used in both research and electric power generation in early 1950's until latemore » 1960's. The Site is contaminated with various volatile organic and inorganic compounds, as well as radionuclides. The major contaminants of concern at the Site are tetrachloroethene (PCE), trichloroethene (TCE), nickel, uranium, and thorium. These compounds are present in soil and groundwater underlying the Site and have migrated off-site. The Site is currently being investigated as part of the Formerly Utilized Sites Remedial Action Program (FUSRAP). The main objective of the current study is to simulate the complex hydrogeologic features in the region, such as numerous current and historic production well fields; large, localized recharge basins; and, multiple aquifers, and to assess potential contaminant migration pathways originating from the Site. For this purpose, the focus of attention was given to the underlying Magothy formation, which has been impacted by the contaminants of concern. This aquifer provides more than 90% of potable water supply in the region. Nassau and Suffolk Counties jointly developed a three-dimensional regional groundwater flow model to help understand the factors affecting groundwater flow regime in the region, to determine adequate water supply for public consumption, to investigate salt water intrusion in localized areas, to evaluate the impacts of regional pumping activity, and to better understand the contaminant transport and fate mechanisms through the underlying aquifers. This regional model, developed for the N.Y. State Department of Environmental Conservation (NYSDEC) by Camp Dresser and McKee (CDM), uses the finite element model DYNFLOW developed by CDM, Cambridge, Massachusetts. The coarseness of the regional model, however, could not adequately capture the hydrogeologic heterogeneity of the aquifer. Specifically, the regional model did not adequately capture the interbedded nature of the Magothy aquifer and, as such, simulated particles tended to track down-gradient from the Site in relatively straight lines while the movement of groundwater in such a heterogeneous aquifer is expected to proceed along a more tortuous path. This paper presents a qualitative comparison of site-specific groundwater flow modeling results with results obtained from the regional model. In order to assess the potential contaminant migration pathways, a particle tracking method was employed. Available site-specific and regional hydraulic conductivity data measured in-situ with respect to depth and location were incorporated into the T-PROG module in GMS model to define statistical variation to better represent the actual stratigraphy and layer heterogeneity. The groundwater flow characteristics in the Magothy aquifer were simulated with the stochastic hydraulic conductivity variation as opposed to constant values as employed in the regional model. Contaminant sources and their exact locations have been fully delineated at the Site during the Remedial Investigation (RI) phase of the project. Contaminant migration pathways originating from these source locations at the Site are qualitatively traced within the sole source aquifer utilizing particles introduced at source locations. Contaminant transport mechanism modeled in the current study is based on pure advection (i.e., plug flow) and mechanical dispersion while molecular diffusion effects are neglected due to relatively high groundwater velocities encountered in the aquifer. In addition, fate of contaminants is ignored hereby to simulate the worst-case scenario, which considers the contaminants of concern as tracer-like compounds for modeling purposes. The results of the modeling analysis are qualitatively compared with the County's regional model, and patterns of contaminant migration in the region are presented. (authors)« less

Nested-scale discharge and groundwater level monitoring to improve predictions of flow route discharges and nitrate loads

NASA Astrophysics Data System (ADS)

van der Velde, Y.; Rozemeijer, J. C.; de Rooij, G. H.; van Geer, F. C.; Torfs, P. J. J. F.; de Louw, P. G. B.

2010-10-01

Identifying effective measures to reduce nutrient loads of headwaters in lowland catchments requires a thorough understanding of flow routes of water and nutrients. In this paper we assess the value of nested-scale discharge and groundwater level measurements for predictions of catchment-scale discharge and nitrate loads. In order to relate field-site measurements to the catchment-scale an upscaling approach is introduced that assumes that scale differences in flow route fluxes originate from differences in the relationship between groundwater storage and the spatial structure of the groundwater table. This relationship is characterized by the Groundwater Depth Distribution (GDD) curve that relates spatial variation in groundwater depths to the average groundwater depth. The GDD-curve was measured for a single field site (0.009 km2) and simple process descriptions were applied to relate the groundwater levels to flow route discharges. This parsimonious model could accurately describe observed storage, tube drain discharge, overland flow and groundwater flow simultaneously with Nash-Sutcliff coefficients exceeding 0.8. A probabilistic Monte Carlo approach was applied to upscale field-site measurements to catchment scales by inferring scale-specific GDD-curves from hydrographs of two nested catchments (0.4 and 6.5 km2). The estimated contribution of tube drain effluent (a dominant source for nitrates) decreased with increasing scale from 76-79% at the field-site to 34-61% and 25-50% for both catchment scales. These results were validated by demonstrating that a model conditioned on nested-scale measurements simulates better nitrate loads and better predictions of extreme discharges during validation periods compared to a model that was conditioned on catchment discharge only.

Response of Tropical Stream Fish Assemblages to Small Hydropower Induced Flow Alteration in the Western Ghats of Karnataka, India.

NASA Astrophysics Data System (ADS)

Rao, S. T.

2016-12-01

Alteration of natural flow regime is considered as one of the major threats to tropical stream fish assemblages as it alters the physio-chemical and micro-habitat features of the river. Flow alteration induced by Small hydro-power (SHP) plants disrupts the flow regime by flow diversion and regulation. The effects of flow alteration on tropical stream fish assemblages, especially in the Western Ghats of India is largely understudied. Such a knowledge is imperative to set limits on flow alteration as SHPs in the Western Ghats are being planned at an unprecedented rate with exemption from environment impact assessments and backing in the form of government subsidies and carbon credits. This study aimed to understand the response of fish assemblages to SHP induced flow alteration in a regulated and unregulated tributary of the Yettinahole River in the Western Ghats of Karnataka. The study intended to quantify the natural and altered flow regime using automated periodic depth measurements, its effect on micro-habitats and environmental variables and finally, understand how fish assemblages respond to such changes. The response of fish assemblage was measured in terms of catch-per-site, species-regime associations and ecological distance between the regimes. The study used a space for time substitution approach and found that the altered flow regime dampened the diurnal and seasonal patterns of natural flow regime. The altered flow regime influenced variations in water quality, micro-habitat heterogeneity and fish assemblage response, each characteristic of the type of flow alteration. The natural flow regime was found to have a higher catch-per-site and strong associations with endemic and niche-specific taxa. Compositional dissimilarities, in terms of ecological distance were observed between the altered and the natural flow regime. Dewatered or flow diverted regime contained species with lentic affinities while an overall low catch-per-site and weak species-regime association was found in the flow regulated regime. The study highlights the importance of natural flow regime in maintaining native biodiversity and suggests the need for cumulative impact assessments for setting limits on flow alteration.

Hydrogeology and physical characteristics of water samples at the Red River aluminum site, Stamps, Arkansas, April 2001

USGS Publications Warehouse

Czarnecki, John B.; Stanton, Gregory P.; Freiwald, David A.

2001-01-01

The Red River Aluminum site near Stamps, Arkansas, contains waste piles of salt cake and metal byproducts from the smelting of aluminum. The waste piles are subjected to about 50 inches of rainfall a year, resulting in the dissolution of the salts and metal. To assess the potential threat to underlying ground-water resources at the site, its hydrogeology was characterized by measuring water levels and field parameters of water quality in 23 wells and at 2 surface-water sites. Seventeen of these monitor wells were constructed at various depths for this study to allow for the separate characterization of the shallow and deep ground-water systems, the calculation of vertical gradients, and the collection of water samples at different depths within the flow system. Lithologic descriptions from drill-hole cuttings and geophysical logs indicate the presence of interbedded sands, gravels, silts, and clays to depths of 65 feet. The regionally important Sparta aquifer underlies the site. Water levels in shallow wells indicate radial flow away from the salt-cake pile located near the center of the site. Flow in the deep system is to the west and southwest toward Bodcau Creek. Water-level data from eight piezometer nests indicate a downward hydraulic gradient from the shallow to deep systems across the site. Values of specific conductance (an indicator of dissolved salts) ranged from 215 to 196,200 microsiemens per centimeter and indicate that saline waters are being transported horizontally and vertically downward away from the site

In situ analysis of dynamic laminar flow extraction using surface-enhanced Raman spectroscopy

PubMed Central

Wang, Fei; Wang, Hua-Lin; Qiu, Yang; Chang, Yu-Long; Long, Yi-Tao

2015-01-01

In this study, we performed micro-scale dynamic laminar flow extraction and site-specific in situ chloride concentration measurements. Surface-enhanced Raman spectroscopy was utilized to investigate the diffusion process of chloride ions from an oil phase to a water phase under laminar flow. In contrast to common logic, we used SERS intensity gradients of Rhodamine 6G to quantitatively calculate the concentration of chloride ions at specific positions on a microfluidic chip. By varying the fluid flow rates, we achieved different extraction times and therefore different chloride concentrations at specific positions along the microchannel. SERS spectra from the water phase were recorded at these different positions, and the spatial distribution of the SERS signals was used to map the degree of nanoparticle aggregation. The concentration of chloride ions in the channel could therefore be obtained. We conclude that this method can be used to explore the extraction behaviour and efficiency of some ions or molecules that enhance the SERS intensity in water or oil by inducing nanoparticle aggregation. PMID:26687436

Surface-Water Quality Conditions and Long-Term Trends at Selected Sites within the Ambient Water-Quality Monitoring Network in Missouri, Water Years 1993-2008

USGS Publications Warehouse

Barr, Miya N.; Davis, Jerri V.

2010-01-01

The U.S. Geological Survey, in cooperation with the Missouri Department of Natural Resources, collects data pertaining to the surface-water resources of Missouri. These data are collected as part of the Missouri Ambient Water-Quality Monitoring Network and constitute a valuable source of reliable, impartial, and timely information for developing an improved understanding of water resources in the State. Six sites from the Ambient Water-Quality Monitoring Network, with data available from the 1993 through 2008 water years, were chosen to compare water-quality conditions and long-term trends of dissolved oxygen, selected physical properties, total suspended solids, dissolved nitrate plus nitrite as nitrogen, total phosphorous, fecal indicator bacteria, and selected trace elements. The six sites used in the study were classified in groups corresponding to the physiography, main land use, and drainage basin size, and represent most stream types in Missouri. Long-term trends in this study were analyzed using flow-adjusted and non-flow adjusted models. Highly censored datasets (greater than 5 percent but less than 50 percent censored values) were not flow-adjusted. Trends that were detected can possibly be related to changes in agriculture or urban development within the drainage basins. Trends in nutrients were the most prevalent. Upward flow-adjusted trends in dissolved nitrate plus nitrite (as nitrogen) concentrations were identified at the Elk River site, and in total phosphorus concentrations at the South Fabius and Grand River sites. A downward flow-adjusted trend was identified in total phosphorus concentrations from Wilson Creek, the only urban site in the study. The downward trend in phosphorus possibly was related to a phosphorus reduction system that began operation in 2001 at a wastewater treatment plant upstream from the sampling site. Total suspended solids concentrations indicated an upward non-flow adjusted trend at the two northern sites (South Fabius and Grand Rivers). The increase in total suspended solids concentrations could be because of soil erosion from land cultivated for row crops. Most trace element data examined in the study were highly censored and could not be used for flow-adjusted trend analyses. Water-quality conditions were assessed to explore relations between data from sites and to the State water-quality standards where applicable for selected constituents. Streamflow varied at each site because of drainage area, land use, and groundwater inputs. Dissolved oxygen and water temperature were similar at all sites except the urban site located on Wilson Creek. Specific conductance was similar between the most northern (South Fabius and Grand River sites) and the most southern sites (Current and Elk River sites). Total suspended solids concentrations were near the method reporting level at all sites, except the northern sites. Streams in northern Missouri are more turbid than streams in southern Missouri and are affected by large volumes of sediment deposition because of soil erosion from land cultivated for row crops. Geometric means of Escherichia coli were calculated from the recreational seasons within the study period. Only the Grand River site exceeded the whole-body-contact standard for frequently used waters. The South Fabius and Grand River sites and the Wilson Creek site had statistically larger densities of both fecal indicator bacteria types than the remaining sites.

Free Energy Wells and Barriers to Ion Transport Across Membranes

NASA Astrophysics Data System (ADS)

Rempe, Susan

2014-03-01

The flow of ions across cellular membranes is essential to many biological processes. Ion transport is also important in synthetic materials used as battery electrolytes. Transport often involves specific ions and fast conduction. To achieve those properties, ion conduction pathways must solvate specific ions by just the ``right amount.'' The right amount of solvation avoids ion traps due to deep free energy wells, and avoids ion block due to high free energy barriers. Ion channel proteins in cellular membranes demonstrate this subtle balance in solvation of specific ions. Using ab initio molecular simulations, we have interrogated the link between binding site structure and ion solvation free energies in biological ion binding sites. Our results emphasize the surprisingly important role of the environment that surrounds ion-binding sites for fast transport of specific ions. We acknowledge support from Sandia's LDRD program. Sandia National Labs is a multi-program laboratory operated by Sandia Corp., a wholly owned subsidiary of Lockheed Martin Corp., for the US DOE's NNSA under contract DE-AC04-94AL85000.

Preferential flow, diffuse flow, and perching in an interbedded fractured-rock unsaturated zone

NASA Astrophysics Data System (ADS)

Nimmo, John R.; Creasey, Kaitlyn M.; Perkins, Kim S.; Mirus, Benjamin B.

2017-03-01

Layers of strong geologic contrast within the unsaturated zone can control recharge and contaminant transport to underlying aquifers. Slow diffuse flow in certain geologic layers, and rapid preferential flow in others, complicates the prediction of vertical and lateral fluxes. A simple model is presented, designed to use limited geological site information to predict these critical subsurface processes in response to a sustained infiltration source. The model is developed and tested using site-specific information from the Idaho National Laboratory in the Eastern Snake River Plain (ESRP), USA, where there are natural and anthropogenic sources of high-volume infiltration from floods, spills, leaks, wastewater disposal, retention ponds, and hydrologic field experiments. The thick unsaturated zone overlying the ESRP aquifer is a good example of a sharply stratified unsaturated zone. Sedimentary interbeds are interspersed between massive and fractured basalt units. The combination of surficial sediments, basalts, and interbeds determines the water fluxes through the variably saturated subsurface. Interbeds are generally less conductive, sometimes causing perched water to collect above them. The model successfully predicts the volume and extent of perching and approximates vertical travel times during events that generate high fluxes from the land surface. These developments are applicable to sites having a thick, geologically complex unsaturated zone of substantial thickness in which preferential and diffuse flow, and perching of percolated water, are important to contaminant transport or aquifer recharge.

Preferential flow, diffuse flow, and perching in an interbedded fractured-rock unsaturated zone

USGS Publications Warehouse

Nimmo, John R.; Creasey, Kaitlyn M; Perkins, Kimberlie; Mirus, Benjamin B.

2017-01-01

Layers of strong geologic contrast within the unsaturated zone can control recharge and contaminant transport to underlying aquifers. Slow diffuse flow in certain geologic layers, and rapid preferential flow in others, complicates the prediction of vertical and lateral fluxes. A simple model is presented, designed to use limited geological site information to predict these critical subsurface processes in response to a sustained infiltration source. The model is developed and tested using site-specific information from the Idaho National Laboratory in the Eastern Snake River Plain (ESRP), USA, where there are natural and anthropogenic sources of high-volume infiltration from floods, spills, leaks, wastewater disposal, retention ponds, and hydrologic field experiments. The thick unsaturated zone overlying the ESRP aquifer is a good example of a sharply stratified unsaturated zone. Sedimentary interbeds are interspersed between massive and fractured basalt units. The combination of surficial sediments, basalts, and interbeds determines the water fluxes through the variably saturated subsurface. Interbeds are generally less conductive, sometimes causing perched water to collect above them. The model successfully predicts the volume and extent of perching and approximates vertical travel times during events that generate high fluxes from the land surface. These developments are applicable to sites having a thick, geologically complex unsaturated zone of substantial thickness in which preferential and diffuse flow, and perching of percolated water, are important to contaminant transport or aquifer recharge.

Calibration of diffuse correlation spectroscopy blood flow index with venous-occlusion diffuse optical spectroscopy in skeletal muscle

PubMed Central

Li, Zhe; Baker, Wesley B.; Parthasarathy, Ashwin B.; Ko, Tiffany S.; Wang, Detian; Schenkel, Steven; Durduran, Turgut; Li, Gang; Yodh, Arjun G.

2015-01-01

Abstract. We investigate and assess the utility of a simple scheme for continuous absolute blood flow monitoring based on diffuse correlation spectroscopy (DCS). The scheme calibrates DCS using venous-occlusion diffuse optical spectroscopy (VO-DOS) measurements of arm muscle tissue at a single time-point. A calibration coefficient (γ) for the arm is determined, permitting conversion of DCS blood flow indices to absolute blood flow units, and a study of healthy adults (N=10) is carried out to ascertain the variability of γ. The average DCS calibration coefficient for the right (i.e., dominant) arm was γ=(1.24±0.15)×108 (mL·100  mL−1·min−1)/(cm2/s). However, variability can be significant and is apparent in our site-to-site and day-to-day repeated measurements. The peak hyperemic blood flow overshoot relative to baseline resting flow was also studied following arm-cuff ischemia; excellent agreement between VO-DOS and DCS was found (R2=0.95, slope=0.94±0.07, mean difference=−0.10±0.45). Finally, we show that incorporation of subject-specific absolute optical properties significantly improves blood flow calibration accuracy. PMID:26720870

Site Plan Safety Submission for Sampling, Monitoring, and Decontamination of Mustard Agent - South Plant, Rocky Mountain Arsenal. Volume 1

DTIC Science & Technology

1988-10-01

sample these ducts. This judgement was based on the following factors : 1. The ducts were open to the atmosphere. 2. RMA records of building area samples...selected based on several factors including piping arrangements, volume to be sampled, sampling equipment flow rates, and the flow rate necessary for...effective sampling. Therefore, each sampling point strategy and procedure was customized based on these factors . The individual specific sampling

Validation, Proof-of-Concept, and Postaudit of the Groundwater Flow and Transport Model of the Project Shoal Area

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ahmed Hassan

2004-09-01

The groundwater flow and radionuclide transport model characterizing the Shoal underground nuclear test has been accepted by the State of Nevada Division of Environmental Protection. According to the Federal Facility Agreement and Consent Order (FFACO) between DOE and the State of Nevada, the next steps in the closure process for the site are then model validation (or postaudit), the proof-of-concept, and the long-term monitoring stage. This report addresses the development of the validation strategy for the Shoal model, needed for preparing the subsurface Corrective Action Decision Document-Corrective Action Plan and the development of the proof-of-concept tools needed during the five-yearmore » monitoring/validation period. The approach builds on a previous model, but is adapted and modified to the site-specific conditions and challenges of the Shoal site.« less

Effects of acclimation on poststocking dispersal and physiological condition of age-1 pallid sturgeon

USGS Publications Warehouse

Oldenburg, E.W.; Guy, C.S.; Cureton, E.S.; Webb, M.A.H.; Gardner, W.M.

2011-01-01

The objective of this study was to evaluate the effects of acclimation to flow and site-specific physicochemical water conditions on poststocking dispersal and physiological condition of age-1 hatchery-reared pallid sturgeon. Fish from three acclimation treatments were radio-tagged, released at two locations (Missouri River and Marias River), and monitored using passive telemetry stations. Marias treatment was acclimated to flow and site-specific physicochemical conditions, Bozeman treatment was acclimated to flow only, and controls had no acclimation (reared under traditional conservation propagation protocol). During both years, fish released in the Missouri River dispersed less than fish released in the Marias River. In 2005, Marias treatment dispersed less and nearly twice as many fish remained in the Missouri River reach as compared to control fish. In 2006, pallid sturgeon dispersed similarly among treatments and the number of fish remaining in the Missouri River reach was similar among all treatments. Differences in poststocking dispersal between years were related to fin curl which was present in all fish in 2005 and only 26% in 2006. Pallid sturgeon from all treatments in both years had a greater affinity for the lower reaches of the Missouri River than the upper reaches. Thus, release site influenced poststocking dispersal more than acclimation treatment. No difference was observed in relative growth rate among treatments. However, acclimation to flow (i.e., exercise conditioning) prevented fat accumulation from rupturing hepatocytes. Acclimation conditions used in this study did not benefit pallid sturgeon unless physiological maladies were present. Overriding all treatment effects was stocking location; thus, natural resource agencies need to consider stocking location carefully to reduce poststocking dispersal. ?? 2011 Blackwell Verlag, Berlin.

Fine-scale hydrodynamics influence the spatio-temporal distribution of harbour porpoises at a coastal hotspot

NASA Astrophysics Data System (ADS)

Jones, A. R.; Hosegood, P.; Wynn, R. B.; De Boer, M. N.; Butler-Cowdry, S.; Embling, C. B.

2014-11-01

The coastal Runnelstone Reef, off southwest Cornwall (UK), is characterised by complex topography and strong tidal flows and is a known high-density site for harbour porpoise (Phocoena phocoena); a European protected species. Using a multidisciplinary dataset including: porpoise sightings from a multi-year land-based survey, Acoustic Doppler Current Profiling (ADCP), vertical profiling of water properties and high-resolution bathymetry; we investigate how interactions between tidal flow and topography drive the fine-scale porpoise spatio-temporal distribution at the site. Porpoise sightings were distributed non-uniformly within the survey area with highest sighting density recorded in areas with steep slopes and moderate depths. Greater numbers of sightings were recorded during strong westward (ebbing) tidal flows compared to strong eastward (flooding) flows and slack water periods. ADCP and Conductivity Temperature Depth (CTD) data identified fine-scale hydrodynamic features, associated with cross-reef tidal flows in the sections of the survey area with the highest recorded densities of porpoises. We observed layered, vertically sheared flows that were susceptible to the generation of turbulence by shear instability. Additionally, the intense, oscillatory near surface currents led to hydraulically controlled flow that transitioned from subcritical to supercritical conditions; indicating that highly turbulent and energetic hydraulic jumps were generated along the eastern and western slopes of the reef. The depression and release of isopycnals in the lee of the reef during cross-reef flows revealed that the flow released lee waves during upslope currents at specific phases of the tidal cycle when the highest sighting rates were recorded. The results of this unique, fine-scale field study provide new insights into specific hydrodynamic features, produced through tidal forcing, that may be important for creating predictable foraging opportunities for porpoises at a local scale. Information on the functional mechanisms linking porpoise distribution to static and dynamic physical habitat variables is extremely valuable to the monitoring and management of the species within the context of European conservation policies and marine renewable energy infrastructure development.

Streamflow and water-quality characteristics at selected sites of the St. Johns River in central Florida, 1933 to 2002

USGS Publications Warehouse

Kroening, Sharon E.

2004-01-01

To meet water-supply needs in central Florida for 2020, the St. Johns River is being considered as a source of water supply to augment ground water from the Floridan aquifer system. Current (2004) information on streamflow and water-quality characteristics of the St. Johns River in east-central Florida is needed by water resources planners to assess the feasibility of using the river as an alternate source of water supply and to design water treatment facilities. To address this need, streamflow and water quality of the 90-mile-long middle reach of the St. Johns River, Florida, from downstream of Lake Poinsett to near DeLand, were characterized by using retrospective (1991-99) and recently collected data (2000-02). Streamflow characteristics were determined by using data from water years 1933-2000. Water-quality characteristics were described using data from 1991-99 at 15 sites on the St. Johns River and 1 site each near the mouths of the Econlockhatchee and Wekiva Rivers. Data were augmented with biweekly water-quality data and continuous physical properties data at four St. Johns River sites and quarterly data from sites on the Wekiva River, Blackwater Creek, and downstream of Blue Springs from 2000-02. Water-quality constituents described were limited to information on physical properties, major ions and other inorganic constituents, nutrients, organic carbon, suspended solids, and phytoplankton chlorophyll-a. The occurrence of antibiotics, human prescription and nonprescription drugs, pesticides, and a suite of organic constituents, which may indicate domestic or industrial waste, were described at two St. Johns River sites using limited data collected in water years 2002-03. The occurrence of these same constituents in water from a pilot water treatment facility on Lake Monroe also was described using data from one sampling event conducted in March 2003. Dissolved oxygen concentration and water pH values in the St. Johns River were significantly lower during high-flow conditions than during low-flow conditions. Low dissolved oxygen concentrations may have resulted from the input of water from marsh areas or the subsequent decomposition of organic matter transported to the river during high-flow events. Low water pH values during high-flow conditions likely resulted from the increased dissolved organic carbon concentrations in the river. Concentrations of total dissolved solids and other inorganic constituents in the St. Johns River were inversely related with streamflow. Most major ion concentrations, total dissolved solids concentrations, and specific conductance values varied substantially at the Christmas, Sanford, and DeLand sites during low-flow periods in 2000-01 probably reflecting wind and tidal effects. Sulfide concentrations as high as 6 milligrams per liter (mg/L) were measured in the St. Johns River during high-flow periods. Increased sulfide concentrations likely resulted from the decomposition of organic matter or the reduction of sulfate. Bromide concentrations as high as 17 mg/L were measured at the most upstream site on the St. Johns River during 2000-02. Temporal variations in bromide were characterized by sharp peaks in concentration during low-flow periods. Peaks in bromide concentrations tended to coincide with peaks in chloride concentrations because the likely source of both constituents is ground water affected by relict seawater. Median dissolved organic carbon concentrations ranged from 15 to 26 mg/L during 2000-02, and concentrations as high as 42 mg/L were measured. Water color values and dissolved organic carbon concentrations generally were significantly greater during high-flow conditions than during low-flow conditions. Specific ultraviolet light absorbance data indicated the organic carbon during high-flow events was more aromatic in composition and likely originated from terrestrially derived sources compared to organic carbon in the river during other times of the year. D

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yoo, Yong Kyoung; Center for Biomicrosystems, Korea Institute of Science and Technology, Seoul 136-791; Lee, Sang-Myung

Combining a highly sensitive sensor platform with highly selective recognition elements is essential for micro/nanotechnology-based electronic nose applications. Particularly, the regeneration sensor surface and its conditions are key issues for practical e-nose applications. We propose a highly sensitive piezoelectric-driven microcantilever array chip with highly selective peptide receptors. By utilizing the peptide receptor, which was discovered by a phase display screening process, we immobilized a dinitrotoluene (DNT) specific peptide as well as a DNT nonspecific peptide on the surface of the cantilever array. The delivery of DNT gas via pressure-driven flow led to a greater instant response of ∼30 Hz, compared tomore » diffusion only (∼15 Hz for 15 h). Using a simple pressure-driven air flow of ∼50 sccm, we confirmed that a ratio of ∼70% of the specific-bounded sites from DNT gas molecules could be regenerated, showing re-usability of the peptide receptor in on-site monitoring for electronic nose applications.« less

Assessment of macroinvertebrate communities in adjacent urban stream basins, Kansas City, Missouri, metropolitan area, 2007 through 2011

USGS Publications Warehouse

Christensen, Eric D.; Krempa, Heather M.

2013-01-01

Wastewater-treatment plant discharges during base flow, which elevated specific conductance and nutrient concentrations, combined sewer overflows, and nonpoint sources likely contributed to water-quality impairment and lower aquatic-life status at the Blue River Basin sites. Releases from upstream reservoirs to the Little Blue River likely decreased specific conductance, suspended-sediment, and dissolved constituent concentrations and may have benefitted water quality and aquatic life of main-stem sites. Chloride concentrations in base-flow samples, attributable to winter road salt application, had the highest correlation with the SUII (Spearman’s ρ equals 0.87), were negatively correlated with the SCI (Spearman’s ρ equals -0.53) and several pollution sensitive Ephemeroptera plus Plecoptera plus Trichoptera abundance and percent richness metrics, and were positively correlated with pollution tolerant Oligochaeta abundance and percent richness metrics. Study results show that the easily calculated SUII and the selected modeled multimetric indices are effective for comparing urban basins and for evaluation of water quality in the Kansas City metropolitan area.

Relation of water quality to land use in the drainage basins of four tributaries to the Toms River, New Jersey, 1994--1995

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hunchak-Kariouk, K.

1999-01-01

This report describes the results of a study to determine the relation between land use and the water quality of four tributaries to the Toms River--Long Swamp Creek, Wrangel Brook, Davenport Branch, and Jakes Branch. The constituent concentrations and yield values presented in this report are based on water-quality and streamflow data collected at seven sites during base flow and stormflow conditions during May 1994 to October 1995. Concentrations and yields (area-normalized instantaneous load values) during periods of base flow and stormflow in the growing and nongrowing seasons are presented for sites on Long Swamp Creek, Wrangel Brook, and Davenportmore » Branch. Only concentrations during base flow are presented for the site on Jakes Branch. Water-quality constituents for which concentrations and yield values are reported include total nitrogen, ammonia, nitrate, organic nitrogen, hydrolyzable phosphorus plus orthophosphorus, orthophosphorus, total suspended solids, and fecal-coliform bacteria. Concentrations of nitrite and Escherichia coliform bacteria also are listed. Distributions of constituent concentrations and yields during base flow and stormflow in the growing and nongrowing season are shown in boxplots. Specific conductance, pH, temperature, and dissolved oxygen in the four tributaries also are discussed, and their values are listed.« less

Three-dimensional multi-scale model of deformable platelets adhesion to vessel wall in blood flow

PubMed Central

Wu, Ziheng; Xu, Zhiliang; Kim, Oleg; Alber, Mark

2014-01-01

When a blood vessel ruptures or gets inflamed, the human body responds by rapidly forming a clot to restrict the loss of blood. Platelets aggregation at the injury site of the blood vessel occurring via platelet–platelet adhesion, tethering and rolling on the injured endothelium is a critical initial step in blood clot formation. A novel three-dimensional multi-scale model is introduced and used in this paper to simulate receptor-mediated adhesion of deformable platelets at the site of vascular injury under different shear rates of blood flow. The novelty of the model is based on a new approach of coupling submodels at three biological scales crucial for the early clot formation: novel hybrid cell membrane submodel to represent physiological elastic properties of a platelet, stochastic receptor–ligand binding submodel to describe cell adhesion kinetics and lattice Boltzmann submodel for simulating blood flow. The model implementation on the GPU cluster significantly improved simulation performance. Predictive model simulations revealed that platelet deformation, interactions between platelets in the vicinity of the vessel wall as well as the number of functional GPIbα platelet receptors played significant roles in platelet adhesion to the injury site. Variation of the number of functional GPIbα platelet receptors as well as changes of platelet stiffness can represent effects of specific drugs reducing or enhancing platelet activity. Therefore, predictive simulations can improve the search for new drug targets and help to make treatment of thrombosis patient-specific. PMID:24982253

Matrix-specific protein kinase A signaling regulates p21 activated kinase activation by flow in endothelial cells

PubMed Central

Funk, Steven Daniel; Yurdagul, Arif; Green, Jonette M.; Jhaveri, Krishna A.; Schwartz, Martin Alexander; Orr, A. Wayne

2010-01-01

Rationale Atherosclerosis is initiated by blood flow patterns that activate inflammatory pathways in endothelial cells. Activation of inflammatory signaling by fluid shear stress is highly dependent on the composition of the subendothelial extracellular matrix. The basement membrane proteins laminin and collagen found in normal vessels suppress flow-induced p21 activated kinase (PAK) and NF-κB activation. By contrast, the provisional matrix proteins fibronectin and fibrinogen found in wounded or inflamed vessels support flow-induced PAK and NF-κB activation. PAK mediates both flow-induced permeability and matrix-specific activation of NF-κB. Objective To elucidate the mechanisms regulating matrix-specific PAK activation. Methods and Results We now show that matrix composition does not affect the upstream pathway by which flow activates PAK (integrin activation, Rac). Instead basement membrane proteins enhance flow-induced protein kinase A (PKA) activation, which suppresses PAK. Inhibiting PKA restored flow-induced PAK and NF-κB activation in cells on basement membrane proteins, whereas stimulating PKA inhibited flow-induced activation of inflammatory signaling in cells on fibronectin. PKA suppressed inflammatory signaling through PAK inhibition. Activating PKA by injection of the PGI2 analog iloprost reduced PAK activation and inflammatory gene expression at sites of disturbed flow in vivo, whereas inhibiting PKA by PKI injection enhanced PAK activation and inflammatory gene expression. Inhibiting PAK prevented the enhancement of inflammatory gene expression by PKI. Conclusions Basement membrane proteins inhibit inflammatory signaling in endothelial cells via PKA-dependent inhibition of PAK. PMID:20224042

Decline of the performance of a portable axial-flow fan due to the friction and duct bending loss of a connected flexible duct.

PubMed

Ojima, Jun

2017-03-28

In a job site, a portable fan is often used to ventilate a confined space. When a portable fan is applied to such a space, the actual ventilation flow rate must be accurately estimated in advance because the safety level of contaminant and oxygen concentrations in the space will determine the ventilation requirements. When a portable fan is used with a flexible duct, the actual flow rate of the fan decreases due to the friction and duct bending loss of the duct. Intending to show the decline of a fan performance, the author conducted laboratory experiments and reported the quantitative effect of the friction and duct bending loss of a flexible duct to the flow rate of a portable fan. Four commercial portable fans of different specifications were procured for the experiments, and the decline of the performance of each portable fan due to the friction loss etc. of a connected flexible duct was investigated by measuring actual flow rate. The flow rate showed an obvious decrease from the rated flow rate when a flexible duct was connected. Connection of a straight polyester flexible duct and a straight aluminum flexible duct reduced the flow rates to 81.2 - 52.9% and less than 50%, respectively. The flow rate decreased with an increase of the bend angle of the flexible duct. It is recommended that flow rate check of a portable fan should be diligently carried out in every job site.

A Global Assessment of Oceanic Heat Loss: Conductive Cooling and Hydrothermal Redistribution of Heat

NASA Astrophysics Data System (ADS)

Hasterok, D. P.; Chapman, D. S.; Davis, E. E.

2011-12-01

A new dataset of ~15000 oceanic heat flow measurements is analyzed to determine the conductive heat loss through the seafloor. Many heat flow values in seafloor younger than 60 Ma are lower than predicted by models of conductively cooled lithosphere. This heat flow deficit is caused by ventilated hydrothermal circulation discharging at crustal outcrops or through thin sedimentary cover. Globally filtering of heat flow data to retain sites with sediment cover >400 m thick and located >60 km from the nearest seamount minimizes the effect of hydrothermal ventilation. Filtered heat flow exhibit a much higher correlation coefficient with seafloor age (up to 0.95 for filtered data in contrast to 0.5 for unfiltered data) and lower variability (reduction by 30%) within an age bin. A small heat flow deficit still persists at ages <25 Ma, possibly as a result of global filtering limitations and incomplete thermal rebound following sediment burial. Detailed heat flow surveys co-located with seismic data can identify environments favoring conductive heat flow; heat flow collected in these environments is higher than that determined by the global dataset, and is more consistent with conductive cooling of the lithosphere. The new filtered data analysis and a growing number of site specific surveys both support estimates of global heat loss in the range 40-47 TW. The estimated hydrothermal deficit is consistent with estimates from geochemical studies ~7 TW, but is a few TW lower than previous estimates derived from heat flow determinations.

Test Methods for Telemetry Systems and Subsystems. Volume 1. Test Methods for Vehicle Telemetry Systems

DTIC Science & Technology

2006-06-01

IEC Web Site - http://www.iec.org/ National Instruments Web Site - http://www.ni.com/ ASA ( Acoustical Society of America) - http://asa.aip.org/ Flow...1994 (R2004), Acoustical Terminology. ANSI S1.10-1966 (R2001), USA Standard Method for Calibration of Microphones. ANSI S1.15-1997, USA Standard...R2001), American National Standard Specification for Acoustical Calibrators. ANSI S1.9-1996 (R2001), American National Standard Instruments for

Evaluation of stream flow effects on smolt survival in the Yakima River Basin, Washington, 2012-2014

USGS Publications Warehouse

Courter, Ian; Garrison, Tommy; Kock, Tobias J.; Perry, Russell W.

2015-01-01

The influence of stream flow on survival of emigrating juvenile (smolts) Pacific salmon Oncorhynchus spp. and steelhead trout O. mykiss is of key management interest. However, few studies have quantified flow effects on smolt migration survival, and available information does not indicate a consistent flow-survival relationship within the typical range of flows under management control. It is hypothesized that smolt migration and dam passage survival are positively correlated with stream flow because higher flows increase migration rates, potentially reducing exposure to predation, and reduce delays in reservoirs. However, available empirical data are somewhat equivocal concerning the influence of flow on smolt survival and the underlying mechanisms driving this relationship. Stream flow effects on survival of emigrating anadromous salmonids in the Yakima Basin have concerned water users and fisheries managers for over 20 years, and previous studies do not provide sufficient information at the resolution necessary to inform water operations, which typically occur on a small spatiotemporal scale. Using a series of controlled flow releases from 2012-2014, combined with radio telemetry, we quantified the relationship between flow and smolt survival from Roza Dam 208 km downstream to the Yakima River mouth, as well as for specific routes of passage at Roza Dam. A novel multistate mark-recapture model accounted for weekly variation in flow conditions experienced by radio-tagged fish. Groups of fish were captured and radio-tagged at Roza Dam and released at two locations, upstream at the Big Pines Campground (river kilometer [rkm] 211) and downstream in the Roza Dam tailrace (rkm 208). A total of 904 hatchery-origin yearling Chinook salmon O. tshawytscha were captured in the Roza Dam fish bypass, radio-tagged and released upstream of Roza Dam. Two hundred thirty seven fish were released in the tailrace of Roza Dam. Fish released in the tailrace of Roza Dam were tagged concurrently with fish released upstream of the dam using identical tagging methods. Tagging and release events were conducted to target a range of flow conditions indicative of flows observed during the typical migration period (March-May) for juvenile spring Chinook salmon in the Yakima River. Three, five and four separate upstream releases were conducted in 2012, 2013, and 2014 respectively, and at least 43 fish were released alive on each occasion. The release sample sizes in 2014 were much larger (~130) compared to previous years for the purpose of increasing precision of survival estimates across the range of flows tested. Migration movements of radio-tagged spring Chinook salmon smolts were monitored with an array of telemetry receiver stations (fixed sites) that extended 208 rkm downstream from the forebay of Roza Dam to the mouth of the Yakima River. Fixed monitoring sites included the forebay of Roza Dam (rkm 208), the tailrace of Roza Dam (rkm 207.9), the mouth of Wenas Creek (rkm 199.2), the mouth of the Naches River (two sites, rkm 189.4), Sunnyside Dam (two sites, rkm 169.1), Prosser Dam (rkm 77.2), and the mouth of the Yakima River (two sites, rkm2 3). This array segregated the study area into four discrete reaches in which survival of tagged fish was estimated. Aerial and underwater antennas were also used to monitor tagged fish at Roza Dam. Aerial antennas were located in the forebay, on the East gate, on the West gate, and in the tailrace of Roza Dam. Underwater antennas were located in the fish bypass, upstream of the East gate, and upstream of the West gate to collect route-specific passage data for tagged fish. Additional years of data collection and analysis could alter or improve our understanding of the influence of flow and other environmental factors on smolt survival in the Yakima River. Nevertheless, during 2012-2014, yearling hatchery Chinook salmon smolt emigration survival was significantly associated with stream flow in the

Application of Crunch-Flow Routines to Constrain Present and Past Carbon Fluxes at Gas-Hydrate Bearing Sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Torres, Marta

2014-01-31

In November 2012, Oregon State University initiated the project entitled: Application of Crunch-Flow routines to constrain present and past carbon fluxes at gas-hydrate bearing sites. Within this project we developed Crunch-Flow based modeling modules that include important biogeochemical processes that need to be considered in gas hydrate environments. Our modules were applied to quantify carbon cycling in present and past systems, using data collected during several DOE-supported drilling expeditions, which include the Cascadia margin in US, Ulleung Basin in South Korea, and several sites drilled offshore India on the Bay of Bengal and Andaman Sea. Specifically, we completed modeling effortsmore » that: 1) Reproduce the compositional and isotopic profiles observed at the eight drilled sites in the Ulleung Basin that constrain and contrast the carbon cycling pathways at chimney (high methane flux) and non-chimney sites (low methane, advective systems); 2) Simulate the Ba record in the sediments to quantify the past dynamics of methane flux in the southern Hydrate Ridge, Cascadia margin; and 3) Provide quantitative estimates of the thickness of individual mass transport deposits (MTDs), time elapsed after the MTD event, rate of sulfate reduction in the MTD, and time required to reach a new steady state at several sites drilled in the Krishna-Godavari (K-G) Basin off India. In addition we developed a hybrid model scheme by coupling a home-made MATLAB code with CrunchFlow to address the methane transport and chloride enrichment at the Ulleung Basins chimney sites, and contributed the modeling component to a study focusing on pore-scale controls on gas hydrate distribution in sediments from the Andaman Sea. These efforts resulted in two manuscripts currently under review, and contributed the modeling component of another pare, also under review. Lessons learned from these efforts are the basis of a mini-workshop to be held at Oregon State University (Feb 2014) to instruct graduate students (OSU and UW) as well as DOE staff from the NETL lab in Albany on the use of Crunch Flow for geochemical applications.« less

Evaluation of hydrologic data collected at the North Penn Area 12 Superfund Site, Montgomery County, Pennsylvania

USGS Publications Warehouse

Senior, Lisa A.; Grazul, Kevin E.; Wood, Charles R.

1998-01-01

The North Penn Area 12 Superfund Site is underlain by the Lockatong Formation, which consists of interbedded gray to black siltstone and shale. The beds of the Lockatong Formation strike northeast and dip about 10d to 20d to the northwest in the vicinity of the site. Ground water moves through fractures that are nearly vertical and horizontal in the shale and siltstone. Permeability and storage are very low. Borehole-geophysical logs were obtained from eight wells to determine the location of fractures, water-producing and water-receiving intervals, and intervals of borehole flow. The logs also were used to quantify fluid movement in the borehole, to characterize the lithology, and to obtain data on well construction. The logs indicate fractures at depths less than 100 feet are more frequent and generally are more productive than fractures at depths greater than 100 feet. The fluid resistivity of water in shallow intervals usually was greater than that in deeper intervals. The rate and direction of fluid movement under nonpumping conditions differs in the boreholes logged. In the northwest part of the site, no vertical flow was detected in three wells and very small amounts of flow were measured in two wells. In the southwest part of the site, downward flow was measured in two wells. Aquifer-isolation tests in three wells provided information on hydraulic heads and specific capacities in discrete vertical intervals and allowed collection of water samples form discrete water-bearing intervals. Natural annual fluctuations of water levels in 11 wells ranged form 11.4 to 28.3 feet. Seven of the 11 wells gave very similar water-level hydrographs. The four southernmost wells on the site show rises in water levels after precipitation much sooner than the other seven wells. Two other wells show daily fluctuations caused by pumping. A potentiometric-surface map of the site and vicinity was prepared from water-level measurements made in late July 1995. The map can be used to determine the approximate direction of ground-water flow.

Probability analysis of the relation of salinity to freshwater discharge in the St. Sebastian River, Florida

USGS Publications Warehouse

Wicklein, S.M.; Gain, W.S.

1999-01-01

The St. Sebastian River lies in the southern part of the Indian River basin on the east coast of Florida. Increases in freshwater discharge due to urbanization and changes in land use have reduced salinity in the St. Sebastian River and, consequently, salinity in the Indian River, affecting the commercial fishing industry. Wind, water temperature, tidal flux, freshwater discharge, and downstream salinity all affect salinity in the St. Sebastian River estuary, but freshwater discharge is the only one of these hydrologic factors which might be affected by water-management practices. A probability analysis of salinity conditions in the St. Sebastian River estuary, taking into account the effects of freshwater discharge over a period from May 1992 to March 1996, was used to determine the likelihood (probability) that salinities, as represented by daily mean specific- conductance values, will fall below a given threshold. The effects of freshwater discharge on salinities were evaluated with a simple volumetric model fitted to time series of measured specific conductance, by using nonlinear optimization techniques. Specific-conductance values for two depths at monitored sites represent stratified flow which results from differences in salt concentration between freshwater and saltwater. Layering of freshwater and saltwater is assumed, and the model is applied independently to each layer with the assumption that the water within the layer is well mixed. The model of specific conductance as a function of discharge (a salinity response model) was combined with a model of residual variation to produce a total probability model. Flow distributions and model residuals were integrated to produce a salinity distribution and determine differences in salinity probabilities as a result of changes in water-management practices. Two possible management alternatives were analyzed: stormwater detention (reducing the peak rate of discharge but not reducing the overall flow volume) and stormwater retention (reducing peak discharges without later release). Detention of freshwater discharges increased the probability of specific- conductance values falling below a given limit (20,000 microsiemens per centimeter) for all sites but one. The retention of freshwater input to the system decreased the likelihood of falling below a selected limit of specific conductance at all sites. For limits of specific conductance (1,000 microsiemens per centimeter or 20,000 microsiemens per centimeter, depending on the site), the predicted days of occurrence below a limit decreased ranging from 17 to 68 percent of the predicted days of occurrence for unregulated flow. The primary finding to be drawn from the discharge-salinity analysis is that an empirical-response model alone does not provide adequate information to assess the response of the system to changes in flow regime. Whether a given level of discharge can produce a given response on a given day is not as important as the probability of that response on a given day and over a period of many days. A deterministic model of the St. Sebastian River estuary based only on discharge would predict that retention of discharge peaks should increase the average salinity conditions in the St. Sebastian River estuary. The probabilistic model produces a very different response indicating that salinity can decrease by a power of three as discharges increase, and that random factors can predominate and control salinity until discharges increase sufficiently to flush the entire system of saltwater.

A method for characterizing late-season low-flow regime in the upper Grand Ronde River Basin, Oregon

USGS Publications Warehouse

Kelly, Valerie J.; White, Seth

2016-04-19

This report describes a method for estimating ecologically relevant low-flow metrics that quantify late‑season streamflow regime for ungaged sites in the upper Grande Ronde River Basin, Oregon. The analysis presented here focuses on sites sampled by the Columbia River Inter‑Tribal Fish Commission as part of their efforts to monitor habitat restoration to benefit spring Chinook salmon recovery in the basin. Streamflow data were provided by the U.S. Geological Survey and the Oregon Water Resources Department. Specific guidance was provided for selection of streamgages, development of probabilistic frequency distributions for annual 7-day low-flow events, and regionalization of the frequency curves based on multivariate analysis of watershed characteristics. Evaluation of the uncertainty associated with the various components of this protocol indicates that the results are reliable for the intended purpose of hydrologic classification to support ecological analysis of factors contributing to juvenile salmon success. They should not be considered suitable for more standard water-resource evaluations that require greater precision, especially those focused on management and forecasting of extreme low-flow conditions.

Using Delft3D to Simulate Current Energy Conversion

NASA Astrophysics Data System (ADS)

James, S. C.; Chartrand, C.; Roberts, J.

2015-12-01

As public concern with renewable energy increases, current energy conversion (CEC) technology is being developed to optimize energy output and minimize environmental impact. CEC turbines generate energy from tidal and current systems and create wakes that interact with turbines located downstream of a device. The placement of devices can greatly influence power generation and structural reliability. CECs can also alter the ecosystem process surrounding the turbines, such as flow regimes, sediment dynamics, and water quality. Software is needed to investigate specific CEC sites to simulate power generation and hydrodynamic responses of a flow through a CEC turbine array. This work validates Delft3D against several flume experiments by simulating the power generation and hydrodynamic response of flow through a turbine or actuator disc(s). Model parameters are then calibrated against these data sets to reproduce momentum removal and wake recovery data with 3-D flow simulations. Simulated wake profiles and turbulence intensities compare favorably to the experimental data and demonstrate the utility and accuracy of a fast-running tool for future siting and analysis of CEC arrays in complex domains.

Downstream Effects of Diversion Dams on Riparian Vegetation Communities in the Routt National Forest, Colorado

NASA Astrophysics Data System (ADS)

Caskey, S. T.; Wohl, E. E.; Dwire, K. A.; Merritt, D. M.; Schnackenberg, L.

2012-12-01

The relationship between riparian vegetation and changes in fluvial processes as a response to flow diversion is not well understood. Water extraction affects the hydrologic flow regime (i.e., magnitude, duration, and frequency of flows) reducing peak and base-flows, which could negatively impact riparian vegetation. Vegetation communities are temporally and spatially variable and are strongly interrelated with alluvial landforms and hydrograph variability. This research compares riparian community characteristics on diverted and undiverted pool-riffle channels and low gradient valleys to examine changes associated with flow diversion in the Routt National Forest (RNF). The RNF is the only under-appropriated area in Colorado, making future water extraction proposals likely. Many small extraction canals siphon water from small, headwater streams in the RNF, but the site-specific or cumulative effects of these diversions on riverine ecosystems have not been investigated. Systematic investigation is necessary, however, to determine whether existing flow diversions have influenced riparian communities and, if so, which communities are most sensitive to diversions. A total of 36 sites were sampled with five channel cross sections established per site, extending into the riparian zone at distance of two times the active channel width, and vegetation was sampled using the line-point intercept method. Preliminary results suggest a shift in vegetation communities from typical riparian species composition to more upland vegetation. The relative sensitivity of these responses are different depending on valley type; low- gradient, unconfined areas are less tolerant of diversion than steeper, confined reaches. Additionally, when stratified by plant assemblage, Salix abundance is significantly reduced downstream of diversion. The results of this study contribute to the collective understanding of mountain headwater riparian vegetation community response to changes in flow regimes and fluvial processes related directly to water extraction by diversion dams.

Population genetic evidence for sex-specific dispersal in an inbred social spider.

PubMed

Smith, Deborah R; Su, Yong-Chao; Berger-Tal, Reut; Lubin, Yael

2016-08-01

Dispersal in most group-living species ensures gene flow among groups, but in cooperative social spiders, juvenile dispersal is suppressed and colonies are highly inbred. It has been suggested that such inbred sociality is advantageous in the short term, but likely to lead to extinction or reduced speciation rates in the long run. In this situation, very low levels of dispersal and gene flow among colonies may have unusually important impacts on fitness and persistence of social spiders. We investigated sex-specific differences in dispersal and gene flow among colonies, as reflected in the genetic structure within colonies and populations of the African social spider Stegodyphus dumicola Pocock, 1898 (Eresidae). We used DNA fingerprinting and mtDNA sequence data along with spatial mapping of colonies to compare male and female patterns of relatedness within and among colonies at three study sites. Samples were collected during and shortly after the mating season to detect sex-specific dispersal. Distribution of mtDNA haplotypes was consistent with proliferation of social nests by budding and medium- to long-distance dispersal by ballooning females. Analysis of molecular variance and spatial autocorrelation analyses of AFLPs showed high levels of genetic similarity within colonies, and STRUCTURE analyses revealed that the number of source populations contributing to colonies ranged from one to three. We also showed significant evidence of male dispersal among colonies at one site. These results support the hypothesis that in social spiders, genetic cohesion among populations is maintained by long-distance dispersal of female colony founders. Genetic diversity within colonies is maintained by colony initiation by multiple dispersing females, and adult male dispersal over short distances. Male dispersal may be particularly important in maintaining gene flow among colonies in local populations.

Nitrate Loads and Concentrations in Surface-Water Base Flow and Shallow Groundwater for Selected Basins in the United States, Water Years 1990-2006

USGS Publications Warehouse

Spahr, Norman E.; Dubrovsky, Neil M.; Gronberg, JoAnn M.; Franke, O. Lehn; Wolock, David M.

2010-01-01

Hydrograph separation was used to determine the base-flow component of streamflow for 148 sites sampled as part of the National Water-Quality Assessment program. Sites in the Southwest and the Northwest tend to have base-flow index values greater than 0.5. Sites in the Midwest and the eastern portion of the Southern Plains generally have values less than 0.5. Base-flow index values for sites in the Southeast and Northeast are mixed with values less than and greater than 0.5. Hypothesized flow paths based on relative scaling of soil and bedrock permeability explain some of the differences found in base-flow index. Sites in areas with impermeable soils and bedrock (areas where overland flow may be the primary hydrologic flow path) tend to have lower base-flow index values than sites in areas with either permeable bedrock or permeable soils (areas where deep groundwater flow paths or shallow groundwater flow paths may occur). The percentage of nitrate load contributed by base flow was determined using total flow and base flow nitrate load models. These regression-based models were calibrated using available nitrate samples and total streamflow or base-flow nitrate samples and the base-flow component of total streamflow. Many streams in the country have a large proportion of nitrate load contributed by base flow: 40 percent of sites have more than 50 percent of the total nitrate load contributed by base flow. Sites in the Midwest and eastern portion of the Southern Plains generally have less than 50 percent of the total nitrate load contributed by base flow. Sites in the Northern Plains and Northwest have nitrate load ratios that generally are greater than 50 percent. Nitrate load ratios for sites in the Southeast and Northeast are mixed with values less than and greater than 50 percent. Significantly lower contributions of nitrate from base flow were found at sites in areas with impermeable soils and impermeable bedrock. These areas could be most responsive to nutrient management practices designed to reduce nutrient transport to streams by runoff. Conversely, sites with potential for shallow or deep groundwater contribution (some combination of permeable soils or permeable bedrock) had significantly greater contributions of nitrate from base flow. Effective nutrient management strategies would consider groundwater nitrate contributions in these areas. Mean annual base-flow nitrate concentrations were compared to shallow-groundwater nitrate concentrations for 27 sites. Concentrations in groundwater tended to be greater than base-flow concentrations for this group of sites. Sites where groundwater concentrations were much greater than base-flow concentrations were found in areas of high infiltration and oxic groundwater conditions. The lack of correspondingly high concentrations in the base flow of the paired surface-water sites may have multiple causes. In some settings, there has not been sufficient time for enough high-nitrate shallow groundwater to migrate to the nearby stream. In these cases, the stream nitrate concentrations lag behind those in the shallow groundwater, and concentrations may increase in the future as more high-nitrate groundwater reaches the stream. Alternatively, some of these sites may have processes that rapidly remove nitrate as water moves from the aquifer into the stream channel. Partitioning streamflow and nitrate load between the quick-flow and base-flow portions of the hydrograph coupled with relative scales of soil permeability can infer the importance of surface water compared to groundwater nitrate sources. Study of the relation of nitrate concentrations to base-flow index and the comparison of groundwater nitrate concentrations to stream nitrate concentrations during times when base-flow index is high can provide evidence of potential nitrate transport mechanisms. Accounting for the surface-water and groundwater contributions of nitrate is crucial to effective management and remediat

Hydraulic-Geometry Relations for Rivers in Coastal and Central Maine

USGS Publications Warehouse

Dudley, Robert W.

2004-01-01

Hydraulic-geometry relations (curves) were derived for 15 sites on 12 rivers in coastal and central Maine on the basis of site-specific (at-a-station) hydraulic-geometry relations and hydraulic models. At-a-station hydraulic-geometry curves, expressed as well-established power functions, describe the relations between channel geometry, velocity, and flow at a given point on a river. The derived at-a-station hydraulic-geometry curves indicate that, on average, a given increase in flow at a given river cross section in the study area will be nearly equally conveyed by increases in velocity and channel cross-sectional area. Regional curves describing the bankfull streamflow and associated channel geometry as functions of drainage area were derived for use in stream-channel assessment and restoration projects specific to coastal and central Maine. Regional hydraulic-geometry curves were derived by combining hydraulic-geometry information for 15 river cross sections using bankfull flow as the common reference streamflow. The exponents of the derived regional hydraulic-geometry relations indicate that, in the downstream direction, most of the conveyance of increasing contribution of flow is accommodated by an increase in cross-sectional area?with about 50 percent of the increase in flow accommodated by an increase in channel width, and 32 percent by an increase in depth. The remaining 18 percent is accommodated by an increase in streamflow velocity. On an annual-peak-series basis, results of this study indicate that the occurrence of bankfull streamflow for rivers in Maine is more frequent than the 1.5-year streamflow. On a flow-duration basis, bankfull streamflow for rivers in coastal and central Maine is equaled or exceeded approximately 8.1 percent of the time on mean?or about 30 days a year. Bankfull streamflow is roughly three times that of the mean annual streamflow for the sites investigated in this study. Regional climate, snowmelt hydrology, and glacial geology may play important roles in dictating the magnitude and frequency of occurrence of bankfull streamflows observed for rivers in coastal and central Maine.

Influence of Drought and Total Phosphorus on Diel pH in Wadeable Streams: Implications for Ecological Risk Assessment of Ionizable Contaminants

EPA Science Inventory

Climatological influences on site-specific ecohydrology are particularly germane in semiarid regions where instream flows are strongly influenced by effluent discharges. Because many traditional and emerging aquatic contaminants, such as pharmaceuticals, are ionizable, we examin...

The Atlas of Chinese World Wide Web Ecosystem Shaped by the Collective Attention Flows.

PubMed

Lou, Xiaodan; Li, Yong; Gu, Weiwei; Zhang, Jiang

2016-01-01

The web can be regarded as an ecosystem of digital resources connected and shaped by collective successive behaviors of users. Knowing how people allocate limited attention on different resources is of great importance. To answer this, we embed the most popular Chinese web sites into a high dimensional Euclidean space based on the open flow network model of a large number of Chinese users' collective attention flows, which both considers the connection topology of hyperlinks between the sites and the collective behaviors of the users. With these tools, we rank the web sites and compare their centralities based on flow distances with other metrics. We also study the patterns of attention flow allocation, and find that a large number of web sites concentrate on the central area of the embedding space, and only a small fraction of web sites disperse in the periphery. The entire embedding space can be separated into 3 regions(core, interim, and periphery). The sites in the core (1%) occupy a majority of the attention flows (40%), and the sites (34%) in the interim attract 40%, whereas other sites (65%) only take 20% flows. What's more, we clustered the web sites into 4 groups according to their positions in the space, and found that similar web sites in contents and topics are grouped together. In short, by incorporating the open flow network model, we can clearly see how collective attention allocates and flows on different web sites, and how web sites connected each other.

Secondary contact and asymmetrical gene flow in a cosmopolitan marine fish across the Benguela upwelling zone

PubMed Central

Reid, K; Hoareau, T B; Graves, J E; Potts, W M; dos Santos, S M R; Klopper, A W; Bloomer, P

2016-01-01

The combination of oceanographic barriers and habitat heterogeneity are known to reduce connectivity and leave specific genetic signatures in the demographic history of marine species. However, barriers to gene flow in the marine environment are almost never impermeable which inevitably allows secondary contact to occur. In this study, eight sampling sites (five along the South African coastline, one each in Angola, Senegal and Portugal) were chosen to examine the population genetic structure and phylogeographic history of the cosmopolitan bluefish (Pomatomus saltatrix), distributed across a large South-east Atlantic upwelling zone. Molecular analyses were applied to mtDNA cytochrome b, intron AM2B1 and 15 microsatellite loci. We detected uncharacteristically high genetic differentiation (FST 0.15–0.20; P<0.001) between the fish sampled from South Africa and the other sites, strongly influenced by five outlier microsatellite loci located in conserved intergenic regions. In addition, differentiation among the remaining East Atlantic sites was detected, although mtDNA indicated past isolation with subsequent secondary contact between these East Atlantic populations. We further identified secondary contact, with unidirectional gene flow from South Africa to Angola. The directional contact is likely explained by a combination of the northward flowing offshore current and endogenous incompatibilities restricting integration of certain regions of the genome and limiting gene flow to the south. The results confirm that the dynamic system associated with the Benguela current upwelling zone influences species distributions and population processes in the South-east Atlantic. PMID:27436525

Secondary contact and asymmetrical gene flow in a cosmopolitan marine fish across the Benguela upwelling zone.

PubMed

Reid, K; Hoareau, T B; Graves, J E; Potts, W M; Dos Santos, S M R; Klopper, A W; Bloomer, P

2016-11-01

The combination of oceanographic barriers and habitat heterogeneity are known to reduce connectivity and leave specific genetic signatures in the demographic history of marine species. However, barriers to gene flow in the marine environment are almost never impermeable which inevitably allows secondary contact to occur. In this study, eight sampling sites (five along the South African coastline, one each in Angola, Senegal and Portugal) were chosen to examine the population genetic structure and phylogeographic history of the cosmopolitan bluefish (Pomatomus saltatrix), distributed across a large South-east Atlantic upwelling zone. Molecular analyses were applied to mtDNA cytochrome b, intron AM2B1 and 15 microsatellite loci. We detected uncharacteristically high genetic differentiation (F ST 0.15-0.20; P<0.001) between the fish sampled from South Africa and the other sites, strongly influenced by five outlier microsatellite loci located in conserved intergenic regions. In addition, differentiation among the remaining East Atlantic sites was detected, although mtDNA indicated past isolation with subsequent secondary contact between these East Atlantic populations. We further identified secondary contact, with unidirectional gene flow from South Africa to Angola. The directional contact is likely explained by a combination of the northward flowing offshore current and endogenous incompatibilities restricting integration of certain regions of the genome and limiting gene flow to the south. The results confirm that the dynamic system associated with the Benguela current upwelling zone influences species distributions and population processes in the South-east Atlantic.

Size-dependent survival of brook trout Salvelinus fontinalis in summer: effects of water temperature and stream flow.

PubMed

Xu, C L; Letcher, B H; Nislow, K H

2010-06-01

A 5 year individual-based data set was used to estimate size-specific survival rates in a wild brook trout Salvelinus fontinalis population in a stream network encompassing a mainstem and three tributaries (1.5-6 m wetted width), western Massachusetts, U.S.A. The relationships between survival in summer and temperature and flow metrics derived from continuous monitoring data were then tested. Increased summer temperatures significantly reduced summer survival rates for S. fontinalis in almost all size classes in all four sites throughout the network. In contrast, extreme low summer flows reduced survival of large fish, but only in small tributaries, and had no significant effects on fish in smaller size classes in any location. These results provide direct evidence of a link between season-specific survival and environmental factors likely to be affected by climate change and have important consequences for the management of both habitats and populations.

Estimation of roughness coefficients for natural stream channels with vegetated banks

USGS Publications Warehouse

Coon, William F.

1998-01-01

Roughness coefficients for 21 stream sites in New York state are presented. The site-specific relation between roughness coefficent and flow depth varies in a predictable manner, depending on energy gradient, relative smoothness (Rd50), and channel-vegetation density. The percentage of wetted perimeter that is vegetated is a useful indicator of when streambank vegetation can affect the roughness coefficient. To estimate the magnitude of this effect requires evaluation of the density and percent of submergence of vegetation.

Estimating the magnitude of peak flows for streams in Kentucky for selected recurrence intervals

USGS Publications Warehouse

Hodgkins, Glenn A.; Martin, Gary R.

2003-01-01

This report gives estimates of, and presents techniques for estimating, the magnitude of peak flows for streams in Kentucky for recurrence intervals of 2, 5, 10, 25, 50, 100, 200, and 500 years. A flowchart in this report guides the user to the appropriate estimates and (or) estimating techniques for a site on a specific stream. Estimates of peak flows are given for 222 U.S. Geological Survey streamflow-gaging stations in Kentucky. In the development of the peak-flow estimates at gaging stations, a new generalized skew coefficient was calculated for the State. This single statewide value of 0.011 (with a standard error of prediction of 0.520) is more appropriate for Kentucky than the national skew isoline map in Bulletin 17B of the Interagency Advisory Committee on Water Data. Regression equations are presented for estimating the peak flows on ungaged, unregulated streams in rural drainage basins. The equations were developed by use of generalized-least-squares regression procedures at 187 U.S. Geological Survey gaging stations in Kentucky and 51 stations in surrounding States. Kentucky was divided into seven flood regions. Total drainage area is used in the final regression equations as the sole explanatory variable, except in Regions 1 and 4 where main-channel slope also was used. The smallest average standard errors of prediction were in Region 3 (from -13.1 to +15.0 percent) and the largest average standard errors of prediction were in Region 5 (from -37.6 to +60.3 percent). One section of this report describes techniques for estimating peak flows for ungaged sites on gaged, unregulated streams in rural drainage basins. Another section references two previous U.S. Geological Survey reports for peak-flow estimates on ungaged, unregulated, urban streams. Estimating peak flows at ungaged sites on regulated streams is beyond the scope of this report, because peak flows on regulated streams are dependent upon variable human activities.

Kinetics of Zn sorption-desorption using a thin disk flow method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hinz, C.; Selim, H.M.

1999-02-01

In this study the authors investigated the kinetics of Zn sorption and desorption using a short column or thin disk method. The method is based on continuous flow through a thin soil layer where the effluent was collected using a fraction collector. Two soils were used: a Windsor soil and Mahan soil. Breakthrough results (BTCs) for different flow velocities indicated that Zn sorption is instantaneous and equilibrium retention is dominant when a pulse of Zn with a concentration of 2.62 [times] 10[sup [minus]5] M is applied. However, based on flow interruption, time-dependent Zn sorption-desorption processes were most pronounced when themore » applied Zn pulse concentration was two orders of magnitude lower. This confirms earlier findings of concentration-dependent kinetics from batch experiments on Windsor soil. The removal of organic matter and iron oxide, based on peroxide and peroxide/dithionite-treatments, resulted in doubling and quadrupling Zn retention, respectively, compared with the untreated Windsor soil. Differences between the untreated, peroxide-, and peroxide/dithionite-treated Windsor soils were most pronounced at low input Zn concentrations, suggesting that more specific sites became available as a result of the different treatments. At high input Zn concentrations, increases of specific sites may not be significant. For the treated soil, stronger sorption and desorption kinetic behavior was exhibited compared with the untreated soil. Diffusion into soil minerals or surface-controlled reactions may cause such behavior.« less

Probabilistically modeling lava flows with MOLASSES

NASA Astrophysics Data System (ADS)

Richardson, J. A.; Connor, L.; Connor, C.; Gallant, E.

2017-12-01

Modeling lava flows through Cellular Automata methods enables a computationally inexpensive means to quickly forecast lava flow paths and ultimate areal extents. We have developed a lava flow simulator, MOLASSES, that forecasts lava flow inundation over an elevation model from a point source eruption. This modular code can be implemented in a deterministic fashion with given user inputs that will produce a single lava flow simulation. MOLASSES can also be implemented in a probabilistic fashion where given user inputs define parameter distributions that are randomly sampled to create many lava flow simulations. This probabilistic approach enables uncertainty in input data to be expressed in the model results and MOLASSES outputs a probability map of inundation instead of a determined lava flow extent. Since the code is comparatively fast, we use it probabilistically to investigate where potential vents are located that may impact specific sites and areas, as well as the unconditional probability of lava flow inundation of sites or areas from any vent. We have validated the MOLASSES code to community-defined benchmark tests and to the real world lava flows at Tolbachik (2012-2013) and Pico do Fogo (2014-2015). To determine the efficacy of the MOLASSES simulator at accurately and precisely mimicking the inundation area of real flows, we report goodness of fit using both model sensitivity and the Positive Predictive Value, the latter of which is a Bayesian posterior statistic. Model sensitivity is often used in evaluating lava flow simulators, as it describes how much of the lava flow was successfully modeled by the simulation. We argue that the positive predictive value is equally important in determining how good a simulator is, as it describes the percentage of the simulation space that was actually inundated by lava.

The Atlas of Chinese World Wide Web Ecosystem Shaped by the Collective Attention Flows

PubMed Central

Lou, Xiaodan; Li, Yong; Gu, Weiwei; Zhang, Jiang

2016-01-01

The web can be regarded as an ecosystem of digital resources connected and shaped by collective successive behaviors of users. Knowing how people allocate limited attention on different resources is of great importance. To answer this, we embed the most popular Chinese web sites into a high dimensional Euclidean space based on the open flow network model of a large number of Chinese users’ collective attention flows, which both considers the connection topology of hyperlinks between the sites and the collective behaviors of the users. With these tools, we rank the web sites and compare their centralities based on flow distances with other metrics. We also study the patterns of attention flow allocation, and find that a large number of web sites concentrate on the central area of the embedding space, and only a small fraction of web sites disperse in the periphery. The entire embedding space can be separated into 3 regions(core, interim, and periphery). The sites in the core (1%) occupy a majority of the attention flows (40%), and the sites (34%) in the interim attract 40%, whereas other sites (65%) only take 20% flows. What’s more, we clustered the web sites into 4 groups according to their positions in the space, and found that similar web sites in contents and topics are grouped together. In short, by incorporating the open flow network model, we can clearly see how collective attention allocates and flows on different web sites, and how web sites connected each other. PMID:27812133

Streamflow and water-quality data for Little Clearfield Creek basin, Clearfield County, Pennsylvania, December 1987 - November 1988

USGS Publications Warehouse

Kostelnik, K.M.; Durlin, R.R.

1989-01-01

Streamflow and water quality data were collected throughout the Little Clearfield Creek basin, Clearfield County, Pennsylvania, from December 1987 through November 1988, to determine the existing quality of surface water over a range of hydrologic conditions. This data will assist the Pennsylvania Department of Environmental Resources during its review of coal mine permit applications. A water quality station near the mouth of Little Clearfield Creek provided continuous record of stream stage, pH, specific conductance, and water temperature. Monthly water quality samples collected at this station were analyzed for total and dissolved metals, nutrients, major cations, and suspended sediment concentrations. Seventeen partial record sites, located throughout the basin, were similarly sampled four times during the study. Streamflow and water quality data obtained at these sites during a winter base flow, a spring storm event, a low summer base flow, and a more moderate summer base flow also are presented. (Author 's abstract)

Relations among storage, yield, and instream flow

NASA Astrophysics Data System (ADS)

Vogel, Richard M.; Sieber, Jack; Archfield, Stacey A.; Smith, Mark P.; Apse, Colin D.; Huber-Lee, Annette

2007-05-01

An extensive literature documents relations between reservoir storage capacity and water supply yield and the properties of instream flow needed to support downstream aquatic ecosystems. However, the literature that evaluates the impact of reservoir operating rules on instream flow properties is limited to a few site-specific studies, and as a result, few general conclusions can be drawn to date. This study adapts the existing generalized water evaluation and planning model (WEAP) to enable general explorations of relations between reservoir storage, instream flow, and water supply yield for a wide class of reservoirs and operating rules. Generalized relationships among these variables document the types of instream flow policies that when combined with drought management strategies, are likely to provide compromise solutions to the ecological and human negotiations for water for different sized reservoir systems. The concept of a seasonal ecodeficit/ecosurplus is introduced for evaluating the impact of reservoir regulation on ecological flow regimes.

An evaluation of methods for estimating decadal stream loads

NASA Astrophysics Data System (ADS)

Lee, Casey J.; Hirsch, Robert M.; Schwarz, Gregory E.; Holtschlag, David J.; Preston, Stephen D.; Crawford, Charles G.; Vecchia, Aldo V.

2016-11-01

Effective management of water resources requires accurate information on the mass, or load of water-quality constituents transported from upstream watersheds to downstream receiving waters. Despite this need, no single method has been shown to consistently provide accurate load estimates among different water-quality constituents, sampling sites, and sampling regimes. We evaluate the accuracy of several load estimation methods across a broad range of sampling and environmental conditions. This analysis uses random sub-samples drawn from temporally-dense data sets of total nitrogen, total phosphorus, nitrate, and suspended-sediment concentration, and includes measurements of specific conductance which was used as a surrogate for dissolved solids concentration. Methods considered include linear interpolation and ratio estimators, regression-based methods historically employed by the U.S. Geological Survey, and newer flexible techniques including Weighted Regressions on Time, Season, and Discharge (WRTDS) and a generalized non-linear additive model. No single method is identified to have the greatest accuracy across all constituents, sites, and sampling scenarios. Most methods provide accurate estimates of specific conductance (used as a surrogate for total dissolved solids or specific major ions) and total nitrogen - lower accuracy is observed for the estimation of nitrate, total phosphorus and suspended sediment loads. Methods that allow for flexibility in the relation between concentration and flow conditions, specifically Beale's ratio estimator and WRTDS, exhibit greater estimation accuracy and lower bias. Evaluation of methods across simulated sampling scenarios indicate that (1) high-flow sampling is necessary to produce accurate load estimates, (2) extrapolation of sample data through time or across more extreme flow conditions reduces load estimate accuracy, and (3) WRTDS and methods that use a Kalman filter or smoothing to correct for departures between individual modeled and observed values benefit most from more frequent water-quality sampling.

An evaluation of methods for estimating decadal stream loads

USGS Publications Warehouse

Lee, Casey; Hirsch, Robert M.; Schwarz, Gregory E.; Holtschlag, David J.; Preston, Stephen D.; Crawford, Charles G.; Vecchia, Aldo V.

2016-01-01

Effective management of water resources requires accurate information on the mass, or load of water-quality constituents transported from upstream watersheds to downstream receiving waters. Despite this need, no single method has been shown to consistently provide accurate load estimates among different water-quality constituents, sampling sites, and sampling regimes. We evaluate the accuracy of several load estimation methods across a broad range of sampling and environmental conditions. This analysis uses random sub-samples drawn from temporally-dense data sets of total nitrogen, total phosphorus, nitrate, and suspended-sediment concentration, and includes measurements of specific conductance which was used as a surrogate for dissolved solids concentration. Methods considered include linear interpolation and ratio estimators, regression-based methods historically employed by the U.S. Geological Survey, and newer flexible techniques including Weighted Regressions on Time, Season, and Discharge (WRTDS) and a generalized non-linear additive model. No single method is identified to have the greatest accuracy across all constituents, sites, and sampling scenarios. Most methods provide accurate estimates of specific conductance (used as a surrogate for total dissolved solids or specific major ions) and total nitrogen – lower accuracy is observed for the estimation of nitrate, total phosphorus and suspended sediment loads. Methods that allow for flexibility in the relation between concentration and flow conditions, specifically Beale’s ratio estimator and WRTDS, exhibit greater estimation accuracy and lower bias. Evaluation of methods across simulated sampling scenarios indicate that (1) high-flow sampling is necessary to produce accurate load estimates, (2) extrapolation of sample data through time or across more extreme flow conditions reduces load estimate accuracy, and (3) WRTDS and methods that use a Kalman filter or smoothing to correct for departures between individual modeled and observed values benefit most from more frequent water-quality sampling.

Factors influencing poststocking dispersal of razorback sucker

USGS Publications Warehouse

Mueller, G.A.; Marsh, P.C.; Foster, D.; Ulibarri, M.; Burke, T.

2003-01-01

Efforts to reintroduce razorback suckers Xyrauchen texanus to specific river reaches have been plagued by downstream drift and poor survival, which have been attributed to stress, disorientation, predation, and poor conditioning. Poststocking dispersal of eight test groups (15 fish each) of razorback suckers was examined for 28 d with telemetry equipment. Fish were released in three different locations in the Colorado River basin of Utah, Arizona, and Nevada: (1) a 65,000-ha reservoir, (2) a small (<1-ha) backwater, and (3) a large (30-ha) backwater on the mainstem river. At each location, subgroups were released immediately (reference) or held to acclimate them to the site (3–7 d) before release. Two of four subgroups for the large-backwater test were preconditioned to flow. Dispersal from the stocking sites was rapid and declined with time for all tests, as fish appeared to seek and find cover. Downstream drift was most pronounced (x = 69.5 km) from the small backwater and significantly (Kruskal–Wallis test, P < 0.01) greater than either the reservoir (x = 3.7 km) or large-backwater sites (x = 7.7 km). Site-acclimation tests were inconclusive, but downstream movement was significantly (Wilcoxon two-sample test, Z = −2.298, P < 0.01) less for fish preconditioned to flow (x = 1.9 km) compared with pond-reared fish (x = 7.7 km). We concluded that poststocking dispersal may decrease if razorback suckers are preconditioned to flow.

Long-term monitoring data provide evidence of declining species richness in a river valued for biodiversity conservation

USGS Publications Warehouse

Freeman, Mary C.; Hagler, Megan M.; Bumpers, Phillip M.; Wheeler, Kit; Wengerd, Seth J.; Freeman, Byron J.

2017-01-01

Free-flowing river segments provide refuges for many imperiled aquatic biota that have been extirpated elsewhere in their native ranges. These biodiversity refuges are also foci of conservation concerns because species persisting within isolated habitat fragments may be particularly vulnerable to local environmental change. We have analyzed long-term (14- and 20-y) survey data to assess evidence of fish species declines in two southeastern U.S. rivers where managers and stakeholders have identified potentially detrimental impacts of current and future land uses. The Conasauga River (Georgia and Tennessee) and the Etowah River (Georgia) form free-flowing headwaters of the extensively dammed Coosa River system. These rivers are valued in part because they harbor multiple species of conservation concern, including three federally endangered and two federally threatened fishes. We used data sets comprising annual surveys for fish species at multiple, fixed sites located at river shoals to analyze occupancy dynamics and temporal changes in species richness. Our analyses incorporated repeated site-specific surveys in some years to estimate and account for incomplete species detection, and test for species-specific (rarity, mainstem-restriction) and year-specific (elevated frequencies of low- or high-flow days) covariates on occupancy dynamics. In the Conasauga River, analysis of 26 species at 13 sites showed evidence of temporal declines in colonization rates for nearly all taxa, accompanied by declining species richness. Four taxa (including one federally endangered species) had reduced occupancy across the Conasauga study sites, with three of these taxa apparently absent for at least the last 5 y of the study. In contrast, a similar fauna of 28 taxa at 10 sites in the Etowah River showed no trends in species persistence, colonization, or occupancy. None of the tested covariates showed strong effects on persistence or colonization rates in either river. Previous studies and observations identified contaminants, nutrient loading, or changes in benthic habitat as possible causes for fish species declines in the Conasauga River. Our analysis provides baseline information that could be used to assess effectiveness of future management actions in the Conasauga or Etowah rivers, and illustrates the use of dynamic occupancy models to evaluate evidence of faunal decline from time-series data.

A Methodology for Confirmatory Testing of Numerical Models of Groundwater Flow and Solute Transport in Fractured Crystalline Rock

NASA Astrophysics Data System (ADS)

Hartley, L.; Follin, S.; Rhen, I.; Selroos, J.

2008-12-01

Three-dimensional, regional, numerical models of groundwater flow and solute transport in fractured crystalline rock are used for two sites in Sweden that are considered for geological disposal of spent nuclear fuel. The models are used to underpin the conceptual modeling that is based on multi-disciplinary data and include descriptions of the geometry of geological features (deformation zones and fracture networks), transient hydrological and chemical boundary conditions, strong spatial heterogeneity in the hydraulic properties, density driven flow, solute transport including rock matrix diffusion, and mixing of different water types in a palaeo-hydrogeological perspective (last 10,000 years). From a credibility point of view, comparisons between measured and simulated data are important and provide a means to address our ability to understand complex hydrogeological systems, and hence what particular applications of a hydrogeological model of a physical system that are justified, e.g. in subsequent repository performance assessment studies. For instance, it has been suggested that an understanding of the hydrochemical evolution throughout geological time is a powerful tool to predict the future evolution of groundwater flow and its chemical composition. The general approach applied in the numerical modeling was to first parameterize the deformation zones and fracture networks hydraulically using fracture and inflow data from single-hole tests. Second, the confirmatory step relies on using essentially the same groundwater flow and solute transport model in terms of grid discretization and parameter settings for matching three types of independent field data: 1) large-scale cross-hole (interference) tests, 2) long-term monitoring of groundwater levels, and 3) hydrochemical composition of fracture water and matrix pore water in deep boreholes. We demonstrate here the modelling approach of the second step - confirmatory testing - using data from the site investigations undertaken at one of the sites in Sweden (Forsmark). Using the three types of data, a unified conceptual description of the groundwater system has been obtained. The integration of multi-disciplinary data and models in the confirmatory testing has provided a means to increase the level of confidence in the final site descriptive model. Specifically, discipline-specific data and models from hydrogeology (transmissivities, groundwater levels, hydraulic gradients), geology (genesis of structures, geometries), rock mechanics (principal stresses), hydrogeochemistry (fracture water and matrix pore water composition) and bedrock transport properties (flow wetted surface, advective residence time) have been utilized in the description of the groundwater system in the bedrock.

Low-flow characteristics for selected streams in Indiana

USGS Publications Warehouse

Fowler, Kathleen K.; Wilson, John T.

2015-01-01

The management and availability of Indiana’s water resources increase in importance every year. Specifically, information on low-flow characteristics of streams is essential to State water-management agencies. These agencies need low-flow information when working with issues related to irrigation, municipal and industrial water supplies, fish and wildlife protection, and the dilution of waste. Industrial, municipal, and other facilities must obtain National Pollutant Discharge Elimination System (NPDES) permits if their discharges go directly to surface waters. The Indiana Department of Environmental Management (IDEM) requires low-flow statistics in order to administer the NPDES permit program. Low-flow-frequency characteristics were computed for 272 continuous-record stations. The information includes low-flow-frequency analysis, flow-duration analysis, and harmonic mean for the continuous-record stations. For those stations affected by some form of regulation, low-flow frequency curves are based on the longest period of homogeneous record under current conditions. Low-flow-frequency values and harmonic mean flow (if sufficient data were available) were estimated for the 166 partial-record stations. Partial-record stations are ungaged sites where streamflow measurements were made at base flow.

Factors affecting the growth of Didymosphenia geminata in New Zealand rivers: Flow, bed disturbance, nutrients, light, and seasonal dynamics. (Invited)

NASA Astrophysics Data System (ADS)

Cullis, J. D.; Gillis, C.; Drummond, J. D.; Garcia, T.; Kilroy, C.; Larned, S.; Hassan, M. A.

2010-12-01

Didymosphenia geminata (didymo) was introduced into a New Zealand river in 2004, and since then has dramatically spread to cover the beds of many rivers with extremely dense and extensive mats. Successful management is hampered by the fact that much is still unknown about the factors affecting the growth of this nuisance species. We synthesized available data on the distribution of D. geminata in New Zealand rivers to determine how physical and chemical system conditions (flow, bed disturbance, nutrients, and light) affect the growth and persistence of this organism. Here we assess results from bi-weekly surveys performed over a full year on two rivers where didymo was first observed in New Zealand; the Oreti and Mararoa. We used the data to test the hypotheses that the development of thick, dense mats requires high light levels but is inversely proportional to nutrient levels, and that mat persistence is controlled by the frequency of flow events that produce bed sediment transport. Observed regrowth between disturbance events was found to be inversely correlated with nutrient availability. The seasonal availability of light did not correlate with variations in growth rate, but this did not account for specific characteristics of the different sites such as aspect, shading, flow depth and turbidity that will all impact on the amount of available light reaching the streambed. The results clearly indicate that the time-history of flow and nutrient levels is critical to evaluating the growth and persistence of D. geminata and that additional site specific information is necessary to determine the role of bed stability and the amount of available light reaching the streambed.

Calculated hydrographs for unsteady research flows at selected sites along the Colorado River downstream from Glen Canyon Dam, Arizona, 1990 and 1991

USGS Publications Warehouse

Griffin, Eleanor R.; Wiele, Stephen M.

1996-01-01

A one-dimensional model of unsteady discharge waves was applied to research flowr that were released from Glen Canyon Dam in support of the Glen Canyon Environmental Studies. These research flows extended over periods of 11 days during which the discharge followed specific, regular patterns repeated on a daily cycle that were similar to the daily releases for power generation. The model was used to produce discharge hydrographs at 38 selected sites in Marble and Grand Canyons for each of nine unsteady flows released from the dam in 1990 and 1991. In each case, the discharge computed from stage measurements and the associated stage-discharge relation at the streamflow-gaging station just below the dam (09379910 Colorado River Hlow Glen Canyon Dam) was routed to Diamond Creek, which is 386 kilometers downstream. Steady and unsteady tributary inflows downstream from the dam were included in the model calculations. Steady inflow to the river from tributaries downstream from the dam was determined for each case by comparing the steady base flow preceding and following the unsteady flow measured at six streamflow-gaging stations between Glen Canyon Dam and Diamond Creek. During three flow periods, significant unsteady inflow was received from the Paria River, or the Little Colorado River, or both. The amount and timing of unsteady inflow was determined using the discharge computed from records of streamflow-gaging stations on the tributaries. Unsteady flow then was added to the flow calculated by the model at the appropriate location. Hydrographs were calculated using the model at 5 streamflow-gaging stations downstream from the dam and at 33 beach study sites. Accuracy of model results was evaluated by comparing the results to discharge hydrographs computed from the records of the five streamflow-gaging stations between Lees Ferry and Lake Mead. Results show that model predictions of wave speed and shape agree well with data from the five streamflow-gaging stations.

Influence of septic systems on stream base flow in the Apalachicola-Chattahoochee-Flint River Basin near Metropolitan Atlanta, Georgia, 2012

USGS Publications Warehouse

Clarke, John S.; Painter, Jaime A.

2014-01-01

Septic systems were identified at 241,733 locations in a 2,539-square-mile (mi2) study area that includes all or parts of 12 counties in the Metropolitan Atlanta, Georgia, area. Septic system percolation may locally be an important component of streamflow in small drainage basins where it augments natural groundwater recharge, especially during extreme low-flow conditions. The amount of groundwater reaching streams depends on how much is intercepted by plants or infiltrates to deeper parts of the groundwater system that flows beyond a basin divide and does not discharge into streams within a basin. The potential maximum percolation from septic systems in the study area is 62 cubic feet per second (ft3/s), of which 52 ft3/s is in the Chattahoochee River Basin and 10 ft3/s is in the Flint River Basin. These maximum percolation rates represent 0.4 to 5.7 percent of daily mean streamflow during the 2011–12 period at the farthest downstream gaging site (station 02338000) on the Chattahoochee River, and 0.5 to 179 percent of daily mean streamflow at the farthest downstream gaging site on the Flint River (02344350). To determine the difference in base flow between basins having different septic system densities, hydrograph separation analysis was completed using daily mean streamflow data at streamgaging stations at Level Creek (site 02334578), with a drainage basin having relatively high septic system density of 101 systems per square mile, and Woodall Creek (site 02336313), with a drainage basin having relatively low septic system density of 18 systems per square mile. Results indicated that base-flow yield during 2011–12 was higher at the Level Creek site, with a median of 0.47 cubic feet per second per square mile ([ft3/s]/mi2), compared to a median of 0.16 (ft3/s)/mi2, at the Woodall Creek site. At the less urbanized Level Creek site, there are 515 septic systems with a daily maximum percolation rate of 0.14 ft3/s, accounting for 11 percent of the base flow in September 2012. At the more urban Woodall Creek site, there are 50 septic systems with an average daily maximum percolation rate of 0.0097 ft3/s, accounting for 5 percent of base flow in September 2012. Streamflow measurements at 133 small drainage basins (less than 5 mi2 in area) during September 2012 indicated no statistically significant difference in streamflow or specific conductance between basins having high and low density of septic systems (HDS and LDS, respectively). The median base-flow yield was 0.04 (f3/s)/mi2 for HDS sites, ranging from 0 to 0.52 (ft3/s)/mi2, and 0.10 (ft3/s)/mi2 for LDS sites, ranging from 0 to 0.49 (ft3/s)/mi2. A Wilcoxon rank-sum test indicated the median base-flow yields for HDS and LDS sites were not statistically different, with a p-value of 0.345. Because of the large size of the study area and associated variations in basin characteristics, data collected in September 2012 were also evaluated on the basis of the basins physical characteristics in an attempt to reduce or eliminate other basin characteristics that might affect base flow. Basins were evaluated based on geologic area, four geographic subareas, and 45-meter (147.6 ft) buffer zone; there were no statistically significant differences between median base-flow yield for HDS and LDS basins. It is probable that detection of the contribution from septic system percolation in base flow at many of the sites visited in September 2012 was obscured by a combination of the limitations of measurement accuracy and evapotranspiration. Detection of septic system percolation may also have been complicated by leaky water and sewer mains, which may have resulted in higher streamflows in LDS basins relative to HDS basins.

Two-year survey of specific hospital wastewater treatment and its impact on pharmaceutical discharges.

PubMed

Wiest, Laure; Chonova, Teofana; Bergé, Alexandre; Baudot, Robert; Bessueille-Barbier, Frédérique; Ayouni-Derouiche, Linda; Vulliet, Emmanuelle

2018-04-01

It is well known that pharmaceuticals are not completely removed by conventional activated sludge wastewater treatment plants. Hospital effluents are of major concern, as they present high concentrations of pharmaceutically active compounds. Despite this, these specific effluents are usually co-treated with domestic wastewaters. Separate treatment has been recommended. However, there is a lack of information concerning the efficiency of separate hospital wastewater treatment by activated sludge, especially on the removal of pharmaceuticals. In this context, this article presents the results of a 2-year monitoring of conventional parameters, surfactants, gadolinium, and 13 pharmaceuticals on the specific study site SIPIBEL. This site allows the characterization of urban and hospital wastewaters and their separate treatment using the same process. Flow proportional sampling, solid-phase extraction, and liquid chromatography coupled with tandem mass spectrometry were used in order to obtain accurate data and limits of quantification consistent with ultra-trace detection. Thanks to these consolidated data, an in-depth characterization of urban and hospital wastewaters was realized, as well as a comparison of treatment efficiency between both effluents. Higher concentrations of organic carbon, AOX, phosphates, gadolinium, paracetamol, ketoprofen, and antibiotics were observed in hospital wastewaters compared to urban wastewaters. Globally higher removals were observed in the hospital wastewater treatment plant, and some parameters were shown to be of high importance regarding removal efficiencies: hydraulic retention time, redox conditions, and ambient temperature. Eleven pharmaceuticals were still quantified at relevant concentrations in hospital and urban wastewaters after treatment (e.g., up to 1 μg/L for sulfamethoxazole). However, as the urban flow was about 37 times higher than the hospital flow, the hospital contribution appeared relatively low compared to domestic discharges. Thanks to the SIPIBEL site, data obtained from this 2-year program are useful to evaluate the relevance of separate hospital wastewater treatment.

Base-flow measurements at partial-record sites on small streams in South Carolina

USGS Publications Warehouse

Barker, Carroll

1986-01-01

This report contains site descriptions and base-flow data collected at 362 partial-record sites in South Carolina. These data include site name, site description, latitude, longitude, drainage area, instantaneous streamflow, and date of the streamflow measurement. The base-flow data can be used as an aid to estimate low flow characteristics at ungaged locations on streams in South Carolina. Partial record data collection sites were established in all physiographic provinces except the lower Coastal Plain. Data collection sites were not established in the lower Coastal Plain because of the widespread occurrence of zero during drought periods in all but the larger streams. (USGS)

Identifying Loci Under Selection Against Gene Flow in Isolation-with-Migration Models

PubMed Central

Sousa, Vitor C.; Carneiro, Miguel; Ferrand, Nuno; Hey, Jody

2013-01-01

When divergence occurs in the presence of gene flow, there can arise an interesting dynamic in which selection against gene flow, at sites associated with population-specific adaptations or genetic incompatibilities, can cause net gene flow to vary across the genome. Loci linked to sites under selection may experience reduced gene flow and may experience genetic bottlenecks by the action of nearby selective sweeps. Data from histories such as these may be poorly fitted by conventional neutral model approaches to demographic inference, which treat all loci as equally subject to forces of genetic drift and gene flow. To allow for demographic inference in the face of such histories, as well as the identification of loci affected by selection, we developed an isolation-with-migration model that explicitly provides for variation among genomic regions in migration rates and/or rates of genetic drift. The method allows for loci to fall into any of multiple groups, each characterized by a different set of parameters, thus relaxing the assumption that all loci share the same demography. By grouping loci, the method can be applied to data with multiple loci and still have tractable dimensionality and statistical power. We studied the performance of the method using simulated data, and we applied the method to study the divergence of two subspecies of European rabbits (Oryctolagus cuniculus). PMID:23457232

GIS-based rapid-assessment of bighead carp Hypophthalmichthys nobilis (Richardson, 1845) suitability in reservoirs

USGS Publications Warehouse

Long, James M.; Liang, Yu; Shoup, Daniel E.; Dzialowski, Andrew R.; Bidwell, Joseph R.

2014-01-01

Broad-scale niche models are good for examining the potential for invasive species occurrences, but can fall short in providing managers with site-specific locations for monitoring. Using Oklahoma as an example, where invasive bighead carp (Hypophthalmichthys nobilis) are established in certain reservoirs, but predicted to be widely distributed based on broad-scale niche models, we cast bighead carp reproductive ecology in a site-specific geospatial framework to determine their potential establishment in additional reservoirs. Because bighead carp require large, long free-flowing rivers with suitable hydrology for reproduction but can persist in reservoirs, we considered reservoir tributaries with mean annual daily discharge ≥8.5 cubic meters per second (m3 /s) and quantified the length of their unimpeded portions. In contrast to published broad-scale niche models that identified nearly the entire state as susceptible to invasion, our site-specific models showed that few reservoirs in Oklahoma (N = 9) were suitable for bighead carp establishment. Moreover, this method was rapid and identified sites that could be prioritized for increased study or scrutiny. Our results highlight the importance of considering the environmental characteristics of individual sites, which is often the level at which management efforts are implemented when assessing susceptibility to invasion.

Delineation of fractures, foliation, and groundwater-flow zones of the bedrock at the Harlem River Tunnel in northern New York County, New York

USGS Publications Warehouse

Stumm, Frederick; Chu, Anthony; Joesten, Peter K.; Noll, Michael L.; Como, Michael D.

2013-01-01

Advanced borehole-geophysical methods were used to investigate the hydrogeology of the crystalline bedrock in 36 boreholes on the northernmost part of New York County, New York, for the construction of a utilities tunnel beneath the Harlem River. The borehole-logging techniques were used to delineate bedrock fractures, foliation, and groundwater-flow zones in test boreholes at the site. Fracture indexes of the deep boreholes ranged from 0.65 to 0.76 per foot. Most of the fracture populations had either northwest to southwest or east to southeast dip azimuths with moderate dip angles. The mean foliation dip azimuth ranged from 100º to 124º southeast with dip angles of 52º to 60º. Groundwater appears to flow through an interconnected network of fractures that are affected by tidal variations from the nearby Harlem River and tunnel construction dewatering operations. The transmissivities of the 3 boreholes tested (USGS-1, USGS-3, and USGS-4), calculated from specific capacity data, were 2, 48, and 30 feet squared per day (ft2/d), respectively. The highest transmissivities were observed in wells north and west of the secant ring. Three borehole-radar velocity tomograms were collected. In the USGS-1 and USGS-4 velocity tomogram there are two areas of low radar velocity. The first is at the top of the tomogram and runs from 105 ft below land surface (BLS) at USGS-4 and extends to 125 ft BLS at USGS-1, the second area is centered at a depth of 150 ft BLS at USGS-1 and 135 to 150 ft BLS at USGS-4. Field measurements of specific conductance of 14 boreholes under ambient conditions at the site indicate an increase in conductivity toward the southwest part of the site (nearest the Harlem River). Specific conductance ranged from 107 microsiemens per centimeter (μS/cm) (borehole 63C) to 11,000 μS/cm (borehole 79B). The secant boreholes had the highest specific conductance.

Effects of grassland management practices and environmental conditions on nutrient concentrations in overland flow

NASA Astrophysics Data System (ADS)

Kurz, Isabelle; Coxon, Catherine; Tunney, Hubert; Ryan, Declan

2005-03-01

The loss of nutrients from agricultural land to water bodies is a serious concern in river basin management in many countries. To gain information on the contributions of agricultural grassland to the eutrophication of water bodies, this study set out to assess phosphorus (P) loss from grassland areas on poorly drained soils. A second aim was to look at the impact of grassland management practices on nutrient concentrations in overland flow. Edge-of-field measurements of overland flow quantity and of P and nitrogen (N) concentrations in overland flow were carried out at three study sites with different soil P levels. The amounts of overland flow and the P concentrations in overland flow varied considerably during events, and among sites and events. Despite this variability, there was a clear increase in P loss in overland flow from the low to the medium and high soil P sites. The inter-site variability of the P concentrations in overland flow greatly exceeded the variability of the amounts of overland flow from the different sites. Thus, P concentrations had a larger impact than the volume of overland flow on the differences in P exports from the three sites. Management practices which, at times, influenced the P and N concentrations in overland flow were grazing and N fertilisation.

Evaluation and application of regional turbidity-sediment regression models in Virginia

USGS Publications Warehouse

Hyer, Kenneth; Jastram, John D.; Moyer, Douglas; Webber, James S.; Chanat, Jeffrey G.

2015-01-01

Conventional thinking has long held that turbidity-sediment surrogate-regression equations are site specific and that regression equations developed at a single monitoring station should not be applied to another station; however, few studies have evaluated this issue in a rigorous manner. If robust regional turbidity-sediment models can be developed successfully, their applications could greatly expand the usage of these methods. Suspended sediment load estimation could occur as soon as flow and turbidity monitoring commence at a site, suspended sediment sampling frequencies for various projects potentially could be reduced, and special-project applications (sediment monitoring following dam removal, for example) could be significantly enhanced. The objective of this effort was to investigate the turbidity-suspended sediment concentration (SSC) relations at all available USGS monitoring sites within Virginia to determine whether meaningful turbidity-sediment regression models can be developed by combining the data from multiple monitoring stations into a single model, known as a “regional” model. Following the development of the regional model, additional objectives included a comparison of predicted SSCs between the regional model and commonly used site-specific models, as well as an evaluation of why specific monitoring stations did not fit the regional model.

Biological relevance of streamflow metrics: Regional and national perspectives

USGS Publications Warehouse

Carlisle, Daren M.; Grantham, Theodore E.; Eng, Kenny; Wolock, David M.

2017-01-01

Protecting the health of streams and rivers requires identifying ecologically significant attributes of the natural flow regime. Streamflow regimes are routinely quantified using a plethora of hydrologic metrics (HMs), most of which have unknown relevance to biological communities. At regional and national scales, we evaluated which of 509 commonly used HMs were associated with biological indicators of fish and invertebrate community integrity. We quantified alteration of each HM by using statistical models to predict site-specific natural baseline values for each of 728 sites across the USA where streamflow monitoring data were available concurrent with assessments of invertebrate or fish community integrity. We then ranked HMs according to their individual association with biological integrity based on random forest models that included HMs and other relevant covariates, such as land cover and stream chemistry. HMs were generally the most important predictors of biological integrity relative to the covariates. At a national scale, the most influential HMs were measures of depleted high flows, homogenization of flows, and erratic flows. Unique combinations of biologically relevant HMs were apparent among regions. We discuss the implications of our findings to the challenge of selecting HMs for streamflow research and management.

Surface geophysics and porewater evaluation at the Lower Darby Creek Area Superfund Site, Philadelphia, Pennsylvania, 2013

USGS Publications Warehouse

Walker, Charles W.; Degnan, James R.; Brayton, Michael J.; Cruz, Roberto M.; Lorah, Michelle M.

2015-01-01

In cooperation with the U.S. Environmental Protection Agency (EPA), Region 3, the U.S. Geological Survey (USGS) is participating in an ongoing study to aid in the identification of subsurface heterogeneities that may act as preferential pathways for contaminant transport in and around the Lower Darby Creek Area (LDCA) Superfund Site, Philadelphia Pa. Lower Darby Creek, which flows into the Delaware River, borders the western part of the former landfill site. In 2013, the USGS conducted surface geophysics measurements and stream porewater sampling to provide additional data for EPA’s site characterization. This report contains data collected from field measurements of direct current (DC) resistivity, frequency-domain electromagnetic (FDEM) surveys, and stream porewater specific conductance (SC).

Parametric Analysis of the feasibility of low-temperature geothermal heat recovery in sedimentary basins

NASA Astrophysics Data System (ADS)

Tomac, I.; Caulk, R.

2016-12-01

The current study explored the feasibility of heat recovery through the installation of heat exchangers in abandoned oil and gas wells. Finite Element Methods (FEM) were employed to determine the effects of various site specific parameters on production fluid temperature. Specifically, the study parameterized depth of well, subsurface temperature gradient, sedimentary rock conductivity, and flow rate. Results show that greater well depth is associated with greater heat flow, with the greatest returns occurring between depths of 1.5 km and 7 km. Beyond 7 km, the rate of return decreases due to a non-linear increase of heat flow combined with a continued linear increase of pumping cost. One cause for the drop of heat flow was the loss of heat as the fluid travels from depth to the surface. Further analyses demonstrated the benefit of an alternative heat exchanger configuration characterized by thermally insulated sections of the upward heat exchanger. These simulations predict production fluid temperature gains between 5 - 10 oC, which may be suitable for geothermal heat pump applications.

Large-Eddy Simulation of Atmospheric Boundary-Layer Flow Through a Wind Farm Sited on Topography

NASA Astrophysics Data System (ADS)

Shamsoddin, Sina; Porté-Agel, Fernando

2017-04-01

Large-eddy simulation (LES) has recently been well validated and applied in the context of wind turbines over flat terrain; however, to date its accuracy has not been tested systematically in the case of turbine-wake flows over topography. Here, we investigate the wake flow in a wind farm situated on hilly terrain using LES for a case where wind-tunnel experimental data are available. To this end, first boundary-layer flow is simulated over a two-dimensional hill in order to characterize the spatial distribution of the mean velocity and the turbulence statistics. A flow simulation is then performed through a wind farm consisting of five horizontal-axis wind turbines sited over the same hill in an aligned layout. The resulting flow characteristics are compared with the former case, i.e., without wind turbines. To assess the validity of the simulations, the results are compared with the wind-tunnel measurements. It is found that LES can reproduce the flow field effectively, and, specifically, the speed-up over the hilltop and the velocity deficit and turbulence intensity enhancement induced by the turbines are well captured by the simulations. Besides, the vertical profiles of the mean velocity and turbulence intensity at different streamwise positions match well those for the experiment. In addition, another numerical experiment is carried out to show how higher (and more realistic) thrust coefficients of the turbines lead to stronger wakes and, at the same time, higher turbulence intensities.

A Geochemical Mass-Balance Method for Base-Flow Separation, Upper Hillsborough River Watershed, West-Central Florida, 2003-2005 and 2009

USGS Publications Warehouse

Kish, G.R.; Stringer, C.E.; Stewart, M.T.; Rains, M.C.; Torres, A.E.

2010-01-01

Geochemical mass-balance (GMB) and conductivity mass-balance (CMB) methods for hydrograph separation were used to determine the contribution of base flow to total stormflow at two sites in the upper Hillsborough River watershed in west-central Florida from 2003-2005 and at one site in 2009. The chemical and isotopic composition of streamflow and precipitation was measured during selected local and frontal low- and high-intensity storm events and compared to the geochemical and isotopic composition of groundwater. Input for the GMB method included cation, anion, and stable isotope concentrations of surface water and groundwater, whereas input for the CMB method included continuous or point-sample measurement of specific conductance. The surface water is a calcium-bicarbonate type water, which closely resembles groundwater geochemically, indicating that much of the surface water in the upper Hillsborough River basin is derived from local groundwater discharge. This discharge into the Hillsborough River at State Road 39 and at Hillsborough River State Park becomes diluted by precipitation and runoff during the wet season, but retains the calcium-bicarbonate characteristics of Upper Floridan aquifer water. Field conditions limited the application of the GMB method to low-intensity storms but the CMB method was applied to both low-intensity and high-intensity storms. The average contribution of base flow to total discharge for all storms ranged from 31 to 100 percent, whereas the contribution of base flow to total discharge during peak discharge periods ranged from less than 10 percent to 100 percent. Although calcium, magnesium, and silica were consistent markers of Upper Floridan aquifer chemistry, their use in calculating base flow by the GMB method was limited because the frequency of point data collected in this study was not sufficient to capture the complete hydrograph from pre-event base-flow to post-event base-flow concentrations. In this study, pre-event water represented somewhat diluted groundwater. Streamflow conductivity integrates the concentrations of the major ions, and the logistics of acquiring specific conductance at frequent time intervals are less complicated than data collection, sample processing, shipment, and analysis of water samples in a laboratory. The acquisition of continuous specific conductance data reduces uncertainty associated with less-frequently collected geochemical point data.

Air demand estimation in bottom outlets with the particle finite element method. Susqueda Dam case study

NASA Astrophysics Data System (ADS)

Salazar, Fernando; San-Mauro, Javier; Celigueta, Miguel Ángel; Oñate, Eugenio

2017-07-01

Dam bottom outlets play a vital role in dam operation and safety, as they allow controlling the water surface elevation below the spillway level. For partial openings, water flows under the gate lip at high velocity and drags the air downstream of the gate, which may cause damages due to cavitation and vibration. The convenience of installing air vents in dam bottom outlets is well known by practitioners. The design of this element depends basically on the maximum air flow through the air vent, which in turn is a function of the specific geometry and the boundary conditions. The intrinsic features of this phenomenon makes it hard to analyse either on site or in full scaled experimental facilities. As a consequence, empirical formulas are frequently employed, which offer a conservative estimate of the maximum air flow. In this work, the particle finite element method was used to model the air-water interaction in Susqueda Dam bottom outlet, with different gate openings. Specific enhancements of the formulation were developed to consider air-water interaction. The results were analysed as compared to the conventional design criteria and to information gathered on site during the gate operation tests. This analysis suggests that numerical modelling with the PFEM can be helpful for the design of this kind of hydraulic works.

Simulation-Based Approach for Site-Specific Optimization of Hydrokinetic Turbine Arrays

NASA Astrophysics Data System (ADS)

Sotiropoulos, F.; Chawdhary, S.; Yang, X.; Khosronejad, A.; Angelidis, D.

2014-12-01

A simulation-based approach has been developed to enable site-specific optimization of tidal and current turbine arrays in real-life waterways. The computational code is based on the St. Anthony Falls Laboratory Virtual StreamLab (VSL3D), which is able to carry out high-fidelity simulations of turbulent flow and sediment transport processes in rivers and streams taking into account the arbitrary geometrical complexity characterizing natural waterways. The computational framework can be used either in turbine-resolving mode, to take into account all geometrical details of the turbine, or with the turbines parameterized as actuator disks or actuator lines. Locally refined grids are employed to dramatically increase the resolution of the simulation and enable efficient simulations of multi-turbine arrays. Turbine/sediment interactions are simulated using the coupled hydro-morphodynamic module of VSL3D. The predictive capabilities of the resulting computational framework will be demonstrated by applying it to simulate turbulent flow past a tri-frame configuration of hydrokinetic turbines in a rigid-bed turbulent open channel flow as well as turbines mounted on mobile bed open channels to investigate turbine/sediment interactions. The utility of the simulation-based approach for guiding the optimal development of turbine arrays in real-life waterways will also be discussed and demonstrated. This work was supported by NSF grant IIP-1318201. Simulations were carried out at the Minnesota Supercomputing Institute.

Effects of water removal on a Hawaiian stream ecosystem

USGS Publications Warehouse

Kinzie, R. A.; Chong, C.; Devrell, J.; Lindstrom, D.; Wolff, R.

2006-01-01

A 3-year study of Wainiha River on Kaua'i, Hawai'i, was carried out to determine the impact that water removal had on key stream ecosystem parameters and functions. The study area included a diversion dam for a hydroelectric plant that removes water at an elevation of 213 m and returns it to the stream about 6 km downstream at an elevation of 30 m. There were two high-elevation sites, one with undiverted flow and one with reduced flow, and two low-elevation sites, one with reduced flow and one with full flow restored. Monthly samples were taken of instream and riparian invertebrates and plants. When samples from similar elevations were compared, dewatered sites had lower concentrations of benthic photosynthetic pigments than full-flow sites, and benthic ash-free dry mass (AFDM) was higher at the two low-elevation sites regardless of flow. Benthic chlorophyll a (chl a) and AFDM were higher in summer months than in the winter. Benthic invertebrate abundance was highest at the full-flow, low-elevation site and benthic invertebrate biomass was highest at the full-flow, high-elevation site. Season had only marginal effects on abundance and biomass of benthic invertebrates. Diversity of benthic invertebrates was higher at the more-downstream sites. Abundance of drifting invertebrates was highest at the site above the diversion dam and generally higher in winter than in summer months. Biomass of drifting invertebrates was also highest at the above-dam site but there was little seasonal difference. Almost all parameters measured were lowest at the site just downstream of the diversion dam. The biotic parameters responded only weakly to flows that had occurred up to 1 month before the measurements were made. Flow, elevation, and season interact in complex ways that impact ecosystem parameters and functions, but water diversion can override all these environmental factors. ?? 2006 by University of Hawai'i Press All rights reserved.

Hydropower Production and Fish Habitat Suitability: Impact and Effectiveness of Environmental Flow Prescriptions

NASA Astrophysics Data System (ADS)

Ceola, Serena; Pugliese, Alessio; Galeati, Giorgio; Castellarin, Attilio

2017-04-01

The anthropogenic alteration of the natural flow regime of a river for hydropower production can significantly modify the processes and functions associated with fluvial ecosystems. In order to preserve the fluvial habitat downstream of dams and diversion structures, environmental flows are commonly defined. Such environmental flows are generally computed from empirical methodologies, which are seldom based on site-specific studies, and may not be representative of local ecological and hydraulic conditions. Here we present the results of a quantitative analysis on the effectiveness of two alternative environmental flow scenarios prescribed in Central Italy (time-invariant experimental and empirically-based flow release versus time-variant hydrogeomorphologically-based flow release) and their impact on hydropower production and fish habitat suitability. The latter is examined by means of several models of habitat suitability curve, which is a well-known approach capable of analysing fluvial species preferences as a function of key eco-hydraulic features, such as water depth, flow velocity and river substrate. The results show an evident loss of hydropower production moving from the time-invariant experimental flow release to the hydrogeomorphological one (nearly 20% at the annual scale). Concerning the effects in terms of fish habitat suitability, our outcomes are less obvious, since they are species- and life stage-specific. The proposed analysis, which can be easily adapted to different riparian habitats and hydrological contexts, is a useful tool to guide the derivation of optimal water resource management strategies in order to ensure both hydropower production and fluvial ecosystem protection.

Hydropower Production and Fish Habitat Suitability: Impact and Effectiveness of Environmental Flow Prescriptions

NASA Astrophysics Data System (ADS)

Castellarin, A.; Galeati, G.; Ceola, S.; Pugliese, A.; Ventura, M.; Montanari, A.

2017-12-01

The anthropogenic alteration of the natural flow regime of a river for hydropower production can significantly modify the processes and functions associated with fluvial ecosystems. In order to preserve the fluvial habitat downstream of dams and diversion structures, environmental flows are commonly defined. Such environmental flows are generally computed from empirical methodologies, which are seldom based on site-specific studies, and may not be representative of local ecological and hydraulic conditions. Here we present the results of a quantitative analysis on the effectiveness of two alternative environmental flow scenarios prescribed in Central Italy (time-invariant experimental and empirically-based flow release versus time-variant hydrogeomorphologically-based flow release) and their impact on hydropower production and fish habitat suitability. The latter is examined by means of several models of habitat suitability curve, which is a well-known approach capable of analysing fluvial species preferences as a function of key eco-hydraulic features, such as water depth, flow velocity and river substrate. The results show an evident loss of hydropower production moving from the time-invariant experimental flow release to the hydrogeomorphological one (nearly 20% at the annual scale). Concerning the effects in terms of fish habitat suitability, our outcomes are less obvious, since they are species- and life stage-specific. The proposed analysis, which can be easily adapted to different riparian habitats and hydrological contexts, is a useful tool to guide the derivation of optimal water resource management strategies in order to ensure both hydropower production and fluvial ecosystem protection.

Sites of electron transfer to membrane-bound copper and hydroperoxide-induced damage in the respiratory chain of Escherichia coli.

PubMed

Rodríguez-Montelongo, L; Farías, R N; Massa, E M

1995-10-20

Previous studies in Escherichia coli as a model system for peroxide toxicity (L. Rodríguez-Montelongo, L. C. De la Cruz-Rodríguez, R. N. Farías, and E. M. Massa, 1993, Biochim. Biophys. Acta 1144, 77-84) have shown that electron flow through the respiratory chain supports a membrane-associated Cu(II)/Cu(I) redox cycle involved in irreversible impairment of the respiratory system by tert-butyl hydroperoxide (t-BOOH). In this paper, E. coli mutants deficient in specific respiratory chain components have been used to determine the sites of copper reduction and the targets inactivated by t-BOOH. Two sites of electron transfer to membrane-bound copper were identified: one in the region between NADH and ubiquinone supported by NADH as electron donor and another localized between ubiquinone and the cytochromes supported by electrons coming from NADH, succinate, or D-lactate. Electron flow through the former site in the presence of t-BOOH led to inactivation of NADH dehydrogenase II, whereas electron flow through the latter site in the presence of the hydroperoxide led to damage of ubiquinone. In agreement with the above in vitro results with isolated membranes, copper-dependent inactivation of NADH dehydrogenase and ubiquinone was demonstrated in E. coli cells exposed to t-BOOH. It is proposed that the t-BOOH-induced damage is a consequence of t-butylalkoxy radical generation through a Fenton-type reaction mediated by redox cycling of membrane-bound copper at those two loci of the respiratory chain.

The Role of Nitric Oxide in Modulating Retinal, Choroidal, and Anterior Uveal Blood Flows in the Domestic Piglet

DTIC Science & Technology

1993-11-17

that are substituted at the quanidino nitrogens are competitive Inhibitors of nitric ox!de synthase in a dOS&<lependent and enantiomerically specific...by nitric oxide. We were able to reduce basal chorc»dal and ante nor wea blood 99 flOYI by 47% and 43%, respectively, by enantiomeric specific...Atthough competitive blockade of NOS by L-NAME is enantiomerically specKle, It Is possible that there Is an allosteric binding site for these arginine

Pore Water Chemistry as Sensitive Indicators for Fluid Flow in Brazos-Trinity Basin #4 and Ursa Basin, Northeast Gulf of Mexico (IODP Expedition 308)

NASA Astrophysics Data System (ADS)

Jiang, S.; Gilhooly, W.; Takano, Y.; Flemings, P.; Behrmann, J.; John, C.

2005-12-01

Rapid sediment loading drives overpressure in marine sedimentary basins around the world. During IODP Expedition 308, two basins (Brazos-Trinity Basin #4 and Ursa Basin) with large different sedimentary loading of turbidite and hemipelagic sediments in the northeast Gulf of Mexico, were investigated to characterize in-situ spatial variations in temperature, pressure, and rock and fluid physical properties and chemistry. Pore water chemical compositions including alkalinity, salinity, pH, anions (Cl, SO4, PO4, H4SiO4), cations (Na, K, Ca, Mg), trace metals (Li, B, Sr, Ba, Fe, Mn), were analyzed in four drill holes at sites U1319, U1320, U1322, and U1324, in the Brazos-Trinity Basin #4 and Ursa Basin. At all sites, pore water chemistry shows great variability at shallow depths with maximam or miminum values corresponding well to seismic reflectors and lithostratigraphic units. The sulfate profile shows a dramatic decrease in SO4 content with a sulfate-methane interface (SMI) of 15 mbsf at Site 1319 and 22 mbsf at Site 1320 in the Brazos-Trinity Basin #4 Basin. In contrast, the sulfate- methane interfaces (SMI) are much deeper in Ursa Basin, i.e., 74 mbsf at Site 1322, and 94 mbsf at Site 2324. The deep SMI in Ursa Basin suggest relatively slow anaerobic degradation of organic matter considering the location of drilling site though we do not determine sulfate reducing rate with organic matter or methane as substrate at this leg. The downhole consumption of sulfate coincides with a concomitant increase in alkalinity and a decrease of Mn, Ca, Mg, Sr, and Li. Furthermore, initial pore water chemistry results appear to be influence by hydrogeologic fluid flow in both basins. Coincidence between pore water profile concentration maxima and parallel seismic reflectors may suggest that these seismic surfaces occur along specific stratigraphic units, which serve as channels for lateral fluid flow. Overall, the downhole variations in interstitial water chemistry may reflect a combination of processes, including anaerobic degradation of organic matter, diagenetic carbonate precipitation/dissolution, and fluid flow pathways.

Concentrations of dissolved solids and nutrients in water sources and selected streams of the Santa Ana Basin, California, Octoger 1998 - September 2001

USGS Publications Warehouse

Kent, Robert; Belitz, Kenneth

2004-01-01

Concentrations of total dissolved solids (TDS) and nutrients in selected Santa Ana Basin streams were examined as a function of water source. The principal water sources are mountain runoff, wastewater, urban runoff, and stormflow. Rising ground water also enters basin streams in some reaches. Data were collected from October 1998 to September 2001 from 6 fixed sites (including a mountain site), 6 additional mountain sites (including an alpine indicator site), and more than 20 synoptic sites. The fixed mountain site on the Santa Ana River near Mentone appears to be a good representative of reference conditions for water entering the basin. TDS can be related to water source. The median TDS concentration in base-flow samples from mountain sites was 200 mg/L (milligrams per liter). Base-flow TDS concentrations from sites on the valley floor typically ranged from 400 to 600 mg/L; base flow to most of these sites is predominantly treated wastewater, with minor contributions of rising ground water and urban runoff. Sparse data suggest that TDS concentrations in urban runoff are about 300 mg/L. TDS concentrations appear to increase on a downstream gradient along the main stem of the Santa Ana River, regardless of source inputs. The major-ion compositions observed in samples from the different sites can be related to water source, as well as to in-stream processes in the basin. Water compositions from mountain sites are categorized into two groups: one group had a composition close to that of the alpine indicator site high in the watershed, and another group had ionic characteristics closer to those in tributaries on the valley floor. The water composition at Warm Creek, a tributary urban indicator site, was highly variable but approximately intermediate to the compositions of the upgradient mountain sites. Water compositions at the Prado Dam and Imperial Highway sites, located 11 miles apart on the Santa Ana River, were similar to one another and appeared to be a mixture of the waters of the upstream sites, Santa Ana River at MWD Crossing, Cucamonga Creek, and Warm Creek. Rainfall usually dilutes stream TDS concentrations. The median TDS concentration in all storm-event discrete samples was 260 mg/L. The median flow-weighted average TDS concentration for stormflow, based on continuous measurement of specific conductance and hydrograph separation of the continuous discharge record, was 190 mg/L. However, stormflow TDS concentrations were variable, and depended on whether the storm was associated with a relatively small or large rainfall event. TDS concentrations in stormflow associated with relatively small events ranged from about 50 to 600 mg/L with a median of 220 mg/L, whereas concentrations in stormflow associated with relatively large events ranged from about 40 to 300 mg/L with a median of 100 mg/L. From the perspective of water managers, the nutrient species of highest concern in Santa Ana Basin streams is nitrate. Most mountain streams had median base-flow concentrations of nitrate below 0.3 mg/L as nitrogen. Nitrate concentrations in both urban runoff and stormflow were near 1 mg/L, which is close to the level found in rainfall for the region. In fact, results from this study suggest that much of the nitrate load in urban storm runoff comes from rainwater. Nitrate concentrations in the Santa Ana River and its major tributaries are highest downstream from wastewater inputs, where median base-flow concentrations of nitrite+nitrate ranged from about 5 to 7 mg/L. About 4 percent of samples collected from sites receiving treated wastewater had nitrate concentrations greater than 10 mg/L. Rising ground water also appears to have high nitrate concentrations (greater than 10 mg/L) in some reaches of the river. Concentrations of other nitrogen species were much lower than nitrate concentrations in base-flow samples. However, storm events increased concentrations and the proportion of organic nitro

Characterising Tidal Flow Within AN Energetic Tidal Environment

NASA Astrophysics Data System (ADS)

Neill, S. P.; Goward Brown, A.; Lewis, M. J.

2016-02-01

The Pentland Firth is a highly energetic and complex tidal strait separating the north of Scotland with the Orkney Islands and is a key location for tidal energy exploitation. Topographic features including islands and headlands, combined with bathymetric complexities within the Pentland Firth create turbulent hydrodynamic flows which are difficult to observe. Site selection in tidal energy environments historically focuses on tidal current magnitude. Without consideration for the more complex hydrodynamics of tidal energy environments tidal energy developers may miss the opportunity to tune their devices or create environment specific tidal energy converters in order to harness the greatest potential from site. Fully characterising these tidal energy environments ensures economic energy extraction. Understanding the interaction of energy extraction with the environment will reduce uncertainty in site selection and allow mitigation of any potential environmental concerns. We apply the 3D ROMS model to the Pentland Firth with the aim of resolving uncertainties within tidal energy resource assessment. Flow magnitudes and directions are examined with a focus on tidal phasing and asymmetry and application to sediment dynamics. Using the ROMS model, it is possible to determine the extent to which the tidal resource varies temporally and spatially with tidal energy extraction. Accurately modelling the tidal dynamics within this environment ensures that potential consequences of tidal energy extraction on the surrounding environment are better understood.

Flow and habitat effects on juvenile fish abundance in natural and altered flow regimes

USGS Publications Warehouse

Freeman, Mary C.; Bowen, Z.H.; Bovee, K.D.; Irwin, E.R.

2001-01-01

Conserving biological resources native to large river systems increasingly depends on how flow-regulated segments of these rivers are managed. Improving management will require a better understanding of linkages between river biota and temporal variability of flow and instream habitat. However, few studies have quantified responses of native fish populations to multiyear (>2 yr) patterns of hydrologic or habitat variability in flow-regulated systems. To provide these data, we quantified young-of-year (YOY) fish abundance during four years in relation to hydrologic and habitat variability in two segments of the Tallapoosa River in the southeastern United States. One segment had an unregulated flow regime, whereas the other was flow-regulated by a peak-load generating hydropower dam. We sampled fishes annually and explored how continuously recorded flow data and physical habitat simulation models (PHABSIM) for spring (April-June) and summer (July-August) preceding each sample explained fish abundances. Patterns of YOY abundance in relation to habitat availability (median area) and habitat persistence (longest period with habitat area continuously above the long-term median area) differed between unregulated and flow-regulated sites. At the unregulated site, YOY abundances were most frequently correlated with availability of shallow-slow habitat in summer (10 species) and persistence of shallow-slow and shallow-fast habitat in spring (nine species). Additionally, abundances were negatively correlated with 1-h maximum flow in summer (five species). At the flow-regulated site, YOY abundances were more frequently correlated with persistence of shallow-water habitats (four species in spring; six species in summer) than with habitat availability or magnitude of flow extremes. The associations of YOY with habitat persistence at the flow-regulated site corresponded to the effects of flow regulation on habitat patterns. Flow regulation reduced median flows during spring and summer, which resulted in median availability of shallow-water habitats comparable to the unregulated site. However, habitat persistence was severely reduced by flow fluctuations resulting from pulsed water releases for peak-load power generation. Habitat persistence, comparable to levels in the unregulated site, only occurred during summer when low rainfall or other factors occasionally curtailed power generation. As a consequence, summer-spawning species numerically dominated the fish assemblage at the flow-regulated site; five of six spring-spawning species occurring at both study sites were significantly less abundant at the flow-regulated site. Persistence of native fishes in flow-regulated systems depends, in part, on the seasonal occurrence of stable habitat conditions that facilitate reproduction and YOY survival.

Synthesis of natural flows at selected sites in and near the Milk River basin, Montana, 1928-89

USGS Publications Warehouse

Cary, L.E.; Parrett, Charles

1995-01-01

Natural monthly streamflows were synthesized for the years 1928-89 at 2 sites in the St. Mary River Basin and 11 sites in the Milk River Basin in north- central Montana. The sites are represented as nodes in a streamflow accounting model being developed by the Bureau of Reclamation for the Milk River Basin. Recorded flows at most sites have been affected by human activities, including reservoir storage and irrigation diversions. The flows at the model nodes were corrected for the effects of these activities to obtain synthesized flows. The synthesized flows at nodes with seasonal and short-term records were extended using a statistical technique. The methods of synthesis varied, depending on upstream activities and information available. Flows at sites in the St. Mary River Basin and at the Milk River at Eastern Crossing of International Boundary pre- viously had been synthesized. The flows at mainstem sites downstream from the Milk River at Eastern Crossing were synthesized by adding synthesized natural runoff from intervening drainage areas to natural flows for Milk River at Eastern Crossing. Natural runoff from intervening drainage areas was estimated by multiplying recorded flows at selected index gaging stations on tributary streams by the ratio of the intervening drainage area to the combined drainage area of the index stations. The recorded flows for Milk River at Western Crossing of International Boundary and for Peoples Creek near Dodson, Montana, were assumed to be natural flows. The synthesized annual flows at the mouth of the Milk River compared favorably with the recorded flows near the mouth when the effects of upstream irrigation were considered.

Value of a dual-polarized gap-filling radar in support of southern California post-fire debris-flow warnings

USGS Publications Warehouse

Jorgensen, David P.; Hanshaw, Maiana N.; Schmidt, Kevin M.; Laber, Jayme L; Staley, Dennis M.; Kean, Jason W.; Restrepo, Pedro J.

2011-01-01

A portable truck-mounted C-band Doppler weather radar was deployed to observe rainfall over the Station Fire burn area near Los Angeles, California, during the winter of 2009/10 to assist with debris-flow warning decisions. The deployments were a component of a joint NOAA–U.S. Geological Survey (USGS) research effort to improve definition of the rainfall conditions that trigger debris flows from steep topography within recent wildfire burn areas. A procedure was implemented to blend various dual-polarized estimators of precipitation (for radar observations taken below the freezing level) using threshold values for differential reflectivity and specific differential phase shift that improves the accuracy of the rainfall estimates over a specific burn area sited with terrestrial tipping-bucket rain gauges. The portable radar outperformed local Weather Surveillance Radar-1988 Doppler (WSR-88D) National Weather Service network radars in detecting rainfall capable of initiating post-fire runoff-generated debris flows. The network radars underestimated hourly precipitation totals by about 50%. Consistent with intensity–duration threshold curves determined from past debris-flow events in burned areas in Southern California, the portable radar-derived rainfall rates exceeded the empirical thresholds over a wider range of storm durations with a higher spatial resolution than local National Weather Service operational radars. Moreover, the truck-mounted C-band radar dual-polarimetric-derived estimates of rainfall intensity provided a better guide to the expected severity of debris-flow events, based on criteria derived from previous events using rain gauge data, than traditional radar-derived rainfall approaches using reflectivity–rainfall relationships for either the portable or operational network WSR-88D radars. Part of the reason for the improvement was due to siting the radar closer to the burn zone than the WSR-88Ds, but use of the dual-polarimetric variables improved the rainfall estimation by ~12% over the use of traditional Z–R relationships.

Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium

PubMed Central

Finak, Greg; Langweiler, Marc; Jaimes, Maria; Malek, Mehrnoush; Taghiyar, Jafar; Korin, Yael; Raddassi, Khadir; Devine, Lesley; Obermoser, Gerlinde; Pekalski, Marcin L.; Pontikos, Nikolas; Diaz, Alain; Heck, Susanne; Villanova, Federica; Terrazzini, Nadia; Kern, Florian; Qian, Yu; Stanton, Rick; Wang, Kui; Brandes, Aaron; Ramey, John; Aghaeepour, Nima; Mosmann, Tim; Scheuermann, Richard H.; Reed, Elaine; Palucka, Karolina; Pascual, Virginia; Blomberg, Bonnie B.; Nestle, Frank; Nussenblatt, Robert B.; Brinkman, Ryan Remy; Gottardo, Raphael; Maecker, Holden; McCoy, J Philip

2016-01-01

Standardization of immunophenotyping requires careful attention to reagents, sample handling, instrument setup, and data analysis, and is essential for successful cross-study and cross-center comparison of data. Experts developed five standardized, eight-color panels for identification of major immune cell subsets in peripheral blood. These were produced as pre-configured, lyophilized, reagents in 96-well plates. We present the results of a coordinated analysis of samples across nine laboratories using these panels with standardized operating procedures (SOPs). Manual gating was performed by each site and by a central site. Automated gating algorithms were developed and tested by the FlowCAP consortium. Centralized manual gating can reduce cross-center variability, and we sought to determine whether automated methods could streamline and standardize the analysis. Within-site variability was low in all experiments, but cross-site variability was lower when central analysis was performed in comparison with site-specific analysis. It was also lower for clearly defined cell subsets than those based on dim markers and for rare populations. Automated gating was able to match the performance of central manual analysis for all tested panels, exhibiting little to no bias and comparable variability. Standardized staining, data collection, and automated gating can increase power, reduce variability, and streamline analysis for immunophenotyping. PMID:26861911

Dynamics of pollutant discharge in combined sewer systems during rain events: chance or determinism?

PubMed

Hannouche, A; Chebbo, G; Joannis, C

2014-01-01

A large database of continuous flow and turbidity measurements cumulating data on hundreds of rain events and dry weather days from two sites in Paris (called Quais and Clichy) and one in Lyon (called Ecully) is presented. This database is used to characterize and compare the behaviour of the three sites at the inter-events scale. The analysis is probed through three various variables: total volumes and total suspended solids (TSS) masses and concentrations during both wet and dry weather periods in addition to the contributions of diverse-origin sources to event flow volume and TSS load values. The results obtained confirm the previous findings regarding the spatial consistency of TSS fluxes and concentrations between both sites in Paris having similar land uses. Moreover, masses and concentrations are proven to be correlated between Parisian sites in a way that implies the possibility of some deterministic processes being reproducible from one catchment to another for a particular rain event. The results also demonstrate the importance of the contribution of wastewater and sewer deposits to the total events' loads and show that such contributions are not specific to Paris sewer networks.

Trafficking receptor signatures define blood plasmablasts responding to tissue-specific immune challenge

PubMed Central

Seong, Yekyung; Lazarus, Nicole H.; Sutherland, Lusijah; Habtezion, Aida; Abramson, Tzvia; He, Xiao-Song; Greenberg, Harry B.

2017-01-01

Antibody-secreting cells are generated in regional lymphoid tissues and traffic as plasmablasts (PBs) via lymph and blood to target sites for local immunity. We used multiparameter flow cytometry to define PB trafficking programs (TPs, combinations of adhesion molecules and chemoattractant receptors) and their imprinting in patients in response to localized infection or immune insults. TPs enriched after infection or autoimmune inflammation of mucosae correlate with sites of immune response or symptoms, with different TPs imprinted during small intestinal, colon, throat, and upper respiratory immune challenge. PBs induced after intramuscular or intradermal influenza vaccination, including flu-specific antibody–secreting cells, display TPs characterized by the lack of mucosal homing receptors. PBs of healthy donors display diverse mucosa-associated TPs, consistent with homeostatic immune activity. Identification of TP signatures of PBs may facilitate noninvasive monitoring of organ-specific immune responses. PMID:28352656

Synthesis of natural flows at selected sites in the upper Missouri River basin, Montana, 1928-89

USGS Publications Warehouse

Cary, L.E.; Parrett, Charles

1996-01-01

Natural monthly streamflows were synthesized for the years 1928-89 for 43 sites in the upper Missouri River Basin upstream from Fort Peck Lake in Montana. The sites are represented as nodes in a streamflow accounting model being developed by the Bureau of Reclamation. Recorded and historical flows at most sites have been affected by human activities including reservoir storage, diversions for irrigation, and municipal use. Natural flows at the sites were synthesized by eliminating the effects of these activities. Recorded data at some sites do not include the entire study period. The missing flows at these sites were estimated using a statistical procedure. The methods of synthesis varied, depending on upstream activities and information available. Recorded flows were transferred to nodes that did not have streamflow-gaging stations from the nearest station with a sufficient length of record. The flows at one node were computed as the sum of flows from three upstream tributaries. Monthly changes in reservoir storage were computed from monthend contents. The changes in storage were corrected for the effects of evaporation and precipitation using pan-evaporation and precipitation data from climate stations. Irrigation depletions and consumptive use by the three largest municipalities were computed. Synthesized natural flow at most nodes was computed by adding algebraically the upstream depletions and changes in reservoir storage to recorded or historical flow at the nodes.

Flow Durations, Low-Flow Frequencies, and Monthly Median Flows for Selected Streams in Connecticut through 2005

USGS Publications Warehouse

Ahearn, Elizabeth A.

2008-01-01

Flow durations, low-flow frequencies, and monthly median streamflows were computed for 91 continuous-record, streamflow-gaging stations in Connecticut with 10 or more years of record. Flow durations include the 99-, 98-, 97-, 95-, 90-, 85-, 80-, 75-, 70-, 60-, 50-, 40-, 30-, 25-, 20-, 10-, 5-, and 1-percent exceedances. Low-flow frequencies include the 7-day, 10-year (7Q10) low flow; 7-day, 2-year (7Q2) low flow; and 30-day, 2-year (30Q2) low flow. Streamflow estimates were computed for each station using data for the period of record through water year 2005. Estimates of low-flow statistics for 7 short-term (operated between 3 and 10 years) streamflow-gaging stations and 31 partial-record sites were computed. Low-flow estimates were made on the basis of the relation between base flows at a short-term station or partial-record site and concurrent daily mean streamflows at a nearby index station. The relation is defined by the Maintenance of Variance Extension, type 3 (MOVE.3) method. Several short-term stations and partial-record sites had poorly defined relations with nearby index stations; therefore, no low-flow statistics were derived for these sites. The estimated low-flow statistics for the short-term stations and partial-record sites include the 99-, 98-, 97-, 95-, 90-, and 85-percent flow durations; the 7-day, 10-year (7Q10) low flow; 7-day, 2-year (7Q2) low flow; and 30-day, 2-year (30Q2) low-flow frequencies; and the August median flow. Descriptive information on location and record length, measured basin characteristics, index stations correlated to the short-term station and partial-record sites, and estimated flow statistics are provided in this report for each station. Streamflow estimates from this study are stored on USGS's World Wide Web application 'StreamStats' (http://water.usgs.gov/osw/streamstats/connecticut.html).

Evaluation of two low-flow releases from Big Tujunga Reservoir, Los Angeles County, California, 2003

USGS Publications Warehouse

Mendez, Gregory O.

2005-01-01

Since 1973, the Santa Ana Sucker (Catostomus santaanae) has been listed as a threatened species under the Endangered Species Act. The Lower Big Tujunga Creek, in Los Angeles County, is one of the areas in southern California where the Santa Ana Sucker is still present. This study was designed to assess two flow releases from Big Tujunga Dam that may contribute to favorable habitat conditions for the Santa Ana Sucker. It is important for the Santa Ana Sucker's survival that pools in the lower reach of the study area are replenished periodically. The focus of the study area was on the Lower Big Tujunga Creek within a reach extending approximately 6 miles downstream from the Big Tujunga Reservoir. Six sites were established from the Big Tujunga Dam to Delta Flats day-use area for data collection. This report describes the study design, discharge measurements, and the flow data collected from the two releases. Two scheduled flows (phases 1 and 2) were released from the Big Tujunga Reservoir in August and September 2003. During the first phase, which lasted 50 hours, travel times from the dam to four sites downstream were determined. Arrival times at the four sites were determined on the basis of temperature data. Travel time from the dam to site 6 (the furthest downstream site) was about 51.5 hours. Travel times for subreaches were 3 hours from site 1 to site 2, 6.5 hours from site 2 to site 3, almost 18 hours from site 3 to site 4, and 24 hours from site 4 to site 6. The temperature probe at site 5 was destroyed, and thus the arrival time could not be estimated. A probe that measures stage was placed in one of the many pools downstream from site 4 to evaluate a typical pool response to a low-flow release. Also, discharge measurements were taken at four sites along the study reach. In phase 2, which lasted 5 days (121 hours), flow losses along the 6-mile reach were analyzed. Losses were estimated by measuring difference in flow from the dam to sites 3, 4, 5, and 6, when flow was most stable at each site or when the last measurement made before flow decreased due to flow from dam being shut off. Losses in the plunge pool, directly below the dam were assumed to be negligible for this study. Overall creek loss between the dam and site 6 (the last site) was estimated to be between 4.0 and 4.2 ft3/s (cubic feet per second). Estimated losses between the dam and intermediate sites were about 1.5 ft3/s to site 3; 2.5 ft3/s to site 4; and between 3.7 and 4.1 ft3/s to site 5.

Characterization of water quality and suspended sediment during cold-season flows, warm-season flows, and stormflows in the Fountain and Monument Creek watersheds, Colorado, 2007–2015

USGS Publications Warehouse

Miller, Lisa D.; Stogner, Sr., Robert W.

2017-09-01

From 2007 through 2015, the U.S. Geological Survey, in cooperation with Colorado Springs City Engineering, conducted a study in the Fountain and Monument Creek watersheds, Colorado, to characterize surface-water quality and suspended-sediment conditions for three different streamflow regimes with an emphasis on characterizing water quality during storm runoff. Data collected during this study were used to evaluate the effects of stormflows and wastewater-treatment effluent discharge on Fountain and Monument Creeks in the Colorado Springs, Colorado, area. Water-quality samples were collected at 2 sites on Upper Fountain Creek, 2 sites on Monument Creek, 3 sites on Lower Fountain Creek, and 13 tributary sites during 3 flow regimes: cold-season flow (November–April), warm-season flow (May–October), and stormflow from 2007 through 2015. During 2015, additional samples were collected and analyzed for Escherichia coli (E. coli) during dry weather conditions at 41 sites, located in E. coli impaired stream reaches, to help identify source areas and scope of the impairment.Concentrations of E. coli, total arsenic, and dissolved copper, selenium, and zinc in surface-water samples were compared to Colorado in-stream standards. Stormflow concentrations of E. coli frequently exceeded the recreational use standard of 126 colonies per 100 milliliters at main-stem and tributary sites by more than an order of magnitude. Even though median E. coli concentrations in warm-season flow samples were lower than median concentrations in storm-flow samples, the water quality standard for E. coli was still exceeded at most main-stem sites and many tributary sites during warm-season flows. Six samples (three warm-season flow and three stormflow samples) collected from Upper Fountain Creek, upstream from the confluence of Monument Creek, and two stormflow samples collected from Lower Fountain Creek, downstream from the confluence with Monument Creek, exceeded the acute water-quality standard for total arsenic of 50 micrograms per liter. All concentrations of dissolved copper, selenium, and zinc measured in samples were below the water-quality standard.Concentrations of dissolved nitrate plus nitrite generally increased from upstream to downstream during all flow periods. The largest downstream increase in dissolved nitrate plus nitrite concentration was measured between sites 07103970 and 07104905 on Monument Creek. All but one tributary that drain into Monument Creek between the two sites had higher median nitrate plus nitrite concentrations than the nearest upstream site on Monument Creek, site 07103970 (MoCr_Woodmen). Increases in the concentration of dissolved nitrate plus nitrite were also evident below wastewater treatment plants located on Fountain Creek.Most stormflow concentrations of dissolved trace elements were smaller than concentrations from cold-season flow or warm-season samples. However, median concentrations of total arsenic, lead, manganese, nickel, and zinc generally were much larger during periods of stormflow than during cold-season flow or warm-season fl. Median concentrations of total arsenic, total copper, total lead, dissolved and total manganese, total nickel, dissolved and total selenium, and dissolved and total zinc concentrations increased from 1.5 to 28.5 times from site 07103700 (FoCr_Manitou) to 07103707 (FoCr_8th) during cold-season and warm-season flows, indicating a large source of trace elements between these two sites. Both of these sites are located on Fountain Creek, upstream from the confluence with Monument Creek.Median suspended-sediment concentrations and median suspended-sediment loads increased in the downstream direction during all streamflow regimes between Monument Creek sites 07103970 (MoCr_Woodmen) and 07104905 (MoCr_Bijou); however, statistically significant increase (p-value less than 0.05) were only present during warm-season flow and stormflow. Significant increases in median suspended sediment concentrations were measured during cold-season flow and warm-season flow between Upper Fountain Creek site 07103707 (FoCr_8th) and Lower Fountain Creek site 07105500 (FoCr_Nevada) because of inflows from Monument Creek with higher suspended-sediment concentrations. Median suspended-sediment concentrations between sites 07104905 (MoCr_Bijou) and 07105500 (FoCr_Nevada) increased significantly during warm-season flow but showed no significant differences during cold-season flow and stormflow. Significant decreases in median suspended-sediment concentrations were measured between sites 07105500 (FoCr_Nevada) and 07105530 (FoCr_Janitell) during all flow regimes.Suspended-sediment concentrations, discharges, and yields associated with stormflow were significantly larger than those associated with warm-season flow. Although large spatial variations in suspended-sediment yields occurred during warm-season flows, the suspended-sediment yield associated with stormflow were as much as 1,000 times larger than the suspended-sediment yields that occurred during warm-season flow. 

The implications of episodic nonequilibrium fracture-matrix flow on site suitability and total system performance

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nitao, J.J.; Buscheck, T.A.; Chesnut, D.A.

1992-04-01

We apply our work on fracture- and matrix-dominated flow to develop a conceptual model of hydrological flow processes in the unsaturated zone at Yucca Mountain. The possibility of fracture-dominated flow is discussed, and various deductions are made on its impact on natural and total system performance, site characterization activities, and site suitability determination.

Seepage investigation on selected reaches of Fish Creek, Teton County, Wyoming, 2004

USGS Publications Warehouse

Wheeler, Jerrod D.; Eddy-Miller, Cheryl A.

2005-01-01

A seepage investigation was conducted on Fish Creek, a tributary to the Snake River in Teton County in western Wyoming, near Wilson. Mainstem, return flow, tributary, spring, and diversion sites were selected and measured on six reaches along Fish Creek. Flow was measured under two flow regimes, high flow in August 2004 and base flow in November 2004. During August 17-19, 2004, 20 sites had quantifiable discharge with median values ranging from 0.93 to 384 ft3/s for the 14 mainstem sites on Fish Creek, and from 0.35 to 12.2 ft3/s for the 5 return, spring, and tributary sites (inflows). The discharge was 2.23 ft3/s for the single diversion site (outflow). Estimated gains or losses from ground water were calculated for all reaches using the median discharge values and the estimated measurement errors. Reach 1 had a calculated gain in discharge from ground water (23.8 ?3.3 ft3/s). Reaches 2-6 had no calculated gains in flow, greater than the estimated error, that could be attributed to ground water. A second set of measurements were made under base-flow conditions during November 3-4, 2004. Twelve of the 20 sites visited in August 2004 were flowing and were measured. All of the Reach 1 sites near Teton Village were dry. Median discharge values ranged from 10.3 to 70.0 ft3/s on the nine Fish Creek mainstem sites, and from 2.32 to 3.71 ft3/s on the three return, spring, and tributary sites (inflows). Reaches 2, 3 and 6 had a gain from ground water. Reaches 4 and 5 had no calculated gains in flow, greater than the estimated error, that could be attributed to ground water.

River analysis and floodplain modeling using HEC-GeoRAS/RAS, GIS and ArcGIS: a case study for the Salinas River

NASA Astrophysics Data System (ADS)

Mishra, P. K.; Bernini Campos, H. E.

2016-12-01

The lower portion of the Salinas River in Monterey bay, California has a history of flood, lots of study has been made ab out the water quality since the river provides water for the crops around, but is still in need a detailed study about the river behavior and flood analysis. The floods did significant damage, affecting valuable landing farms, residences and businesses in Monterey County. The first step for this study is comprehend and collect the river bathymetry and surroundings and then analyze the discharge and how it is going to change with time. This thesis develops a model about the specific site, recruiting real data from GIS and performing a flow simulation according to flow data provided by USGS, to verify water surface elevation and floodplain. The ArcMap, developed by ESRI, was used along with an extension (HEC-GeoRAS) because it was indeed the most appropriate model to work with the Digital Elevation Model, develop the floodplain and characterizing the land surface accurately in the study site. The HEC-RAS software, developed by US Army Corp of Engineers, was used to compute one-dimension steady flow and two-dimension unsteady flow, providing flow velocity, water surface elevation and profiles, total surface area, head and friction loss and other characteristics, allowing the analysis of the flow. A mean discharge, a mean peak streamflow and a peak discharge were used for the steady flow and a Hydrograph was used for the unsteady flow, both are based on the 1995 flood and discharge history. This study provides important information about water surface elevation and water flow, allowing stakeholders and the government to analyze solutions to avoid damage to the society and landowners.

Experimental Study of Unsteady Separation in a Laminar Boundary Layer

NASA Astrophysics Data System (ADS)

Bonacci, Andrew; Lang, Amy; Wahidi, Redha; Santos, Leo

2016-11-01

Separation, caused by an adverse pressure gradient, can be a major problem to aircraft. Reversing flow occurs in separated regions and an investigation of how this backflow forms is of interest due to the fact that this could be used as a means of initiating flow control. Specifically, backflow can bristle shark scales which may be linked to a passive, flow actuated separation control mechanism. An experiment was conducted in a water tunnel to replicate separation, with a focus on the reversing flow development near the wall within a laminar boundary layer. Using a rotating cylinder, an adverse pressure gradient was induced creating a separated region over a flat plate. In this experiment the boundary layer grows to sizes great enough that the scale of the flow is increased, making it more measurable to DPIV. In the future, this research can be utilized to better understand flow control mechanisms such as those enabled by shark skin. Funding from Army Research Office and NSF REU site Grant EEC 1358991 is greatly appreciated.

Spatial and temporal variation in recruitment and growth of Channel Catfish Alabama bass and Tallapoosa Bass in the Tallapoosa River and associated tributaries

USGS Publications Warehouse

Irwin, Elise R.; Goar, Taconya

2015-01-01

Effects of hydrology on growth and hatching success of age-0 black basses and Channel Catfish were examined in regulated and unregulated reaches of the Tallapoosa River, Alabama. Species of the family Centrarchidae, Ictalurus punctatus Channel Catfish and Pylodictis olivaris Flathead Catfish were also collected from multiple tributaries in the basin. Fish were collected from 2010-2014 and were assigned daily ages using otoliths. Hatch dates of individuals of three species (Micropterus henshalli Alabama Bass, M. tallapoosae Tallapoosa Bass and Channel Catfish) were back calculated, and growth histories were estimated every 5 d post hatch from otolith sections using incremental growth analysis. Hatch dates and incremental growth were related to hydrologic and temperature metrics from environmental data collected during the same time periods. Hatch dates at the regulated sites were related to and typically occurred during periods with low and stable flow conditions; however no clear relations between hatch and thermal or flow metrics were evident for the unregulated sites. Some fish hatched during unsuitable thermal conditions at the regulated site suggesting that some fish may recruit from unregulated tributaries. Ages and growth rates of age-0 black basses ranged from 105 to 131 d and 0.53 to 1.33 mm/day at the regulated sites and 44 to 128 d and 0.44 to 0.96 mm/d at the unregulated sites. In general, growth was highest among age-0 fish from the regulated sites, consistent with findings of other studies. Mortality of age-0 to age-1 fish was also variable among years and between sites and with the exception of one year, was lower at regulated sites. Multiple and single regression models of incremental growth versus age, discharge, and temperature metrics were evaluated with Akaike’s Information Criterion (AICc) to assess models that best described growth parameters. Of the models evaluated, the best overall models predicted that daily incremental growth was positively related to low flow parameters and negatively related to the number of times the hydrograph changed direction (e.g., reversals). These results suggest that specific flow and temperature criteria provided from the dam could potentially enhance growth and hatch success of these important sport fish species.

Hydrologic and salinity characteristics of Currituck Sound and selected tributaries in North Carolina and Virginia, 1998–99

USGS Publications Warehouse

Caldwell, William Scott

2001-01-01

Data collected at three sites in Currituck Sound and three tributary sites between March 1, 1998, and February 28, 1999, were used to describe hydrologic and salinity characteristics of Currituck Sound. Water levels and salinity were measured at West Neck Creek at Pungo and at Albemarle and Chesapeake Canal near Princess Anne in Virginia, and at Coinjock, Bell Island, Poplar Branch, and Point Harbor in North Carolina. Flow velocity also was measured at the West Neck Creek and Coinjock sites.The maximum water-level range during the study period was observed near the lower midpoint of Currituck Sound at Poplar Branch. Generally, water levels at all sites were highest during March and April, and lowest during November and December. Winds from the south typically produced higher water levels in Currituck Sound, whereas winds from the north typically produced lower water levels. Although wind over Currituck Sound is associated with fluctuations in water level within the sound, other mechanisms, such as the effects of wind on Albemarle Sound and on other water bodies south of Currituck Sound, likely affect low-frequency water-level variations in Currituck Sound.Flow in West Neck Creek ranged from 313 cubic feet per second to the south to -227 cubic feet per second to the north (negative indicates flow to the north). Flow at the Coinjock site ranged from 15,300 cubic feet per second to the south to -11,700 cubic feet per second to the north. Flow was to the south 68 percent of the time at the West Neck Creek site and 44 percent of the time at the Coinjock site. Daily flow volumes were calculated as the sum of the instantaneous flow volumes. The West Neck Creek site had a cumulative flow volume to the south of 7.69 x 108 cubic feet for the period March 1, 1998, to February 28, 1999; the Coinjock site had a cumulative flow volume to the north of -1.33 x 1010 cubic feet for the same study period.Wind direction and speed influence flow at the West Neck Creek and Coinjock sites, whereas precipitation alone has little effect on flow at these sites. Flow at the West Neck Creek site is semidiurnal but is affected by wind direction and speed. Flow to the south (positive flow) was associated with wind speeds averaging more than 15 miles per hour from the northwest; flow to the north (negative flow) was associated with wind speeds averaging more than 15 miles per hour from the south and southwest. Flow at the Coinjock site reacted in a more unpredictable manner and was not affected by winds or tides in the same manner as West Neck Creek, with few tidal characteristics evident in the record.Throughout the study period, maximum salinity exceeded 3.5 parts per thousand at all sites; however, mean and median salinities were below 3.5 parts per thousand at all sites except the Point Harbor site (3.6 and 4.2 parts per thousand, respectively) at the southern end of the sound. Salinities were less than or equal to 3.5 parts per thousand nearly 100 percent of the time at the Bell Island and Poplar Branch sites in Currituck Sound and about 86 percent of the time at the Albemarle and Chesapeake Canal site north of the sound. Salinity at the West Neck Creek and Coinjock sites was less than or equal to 3.5 parts per thousand about 82 percent of the time.During this study, prevailing winds from the north were associated with flow to the south and tended to increase salinity at the West Neck Creek and the Albemarle and Chesapeake Canal sites. Conversely, these same winds tended to decrease salinity at the other sites. Prevailing winds from the south and southwest were associated with flow to the north and tended to increase salinity at the Poplar Branch and Point Harbor sites in Currituck Sound and at the Coinjock site, but these same winds tended to decrease salinity at the West Neck Creek and the Albemarle and Chesapeake Canal sites. The greatest variations in salinity were observed at the northernmost site, West Neck Creek, and thesouthernmost site, Point Harbor. The least variation in salinity was observed at the upper midpoint of the sound at the Bell Island site.Daily salt loads were computed for 364 days at the West Neck Creek site and 348 days at the Coinjock site from March 1, 1998, to February 28, 1999. The cumulative salt load at West Neck Creek was 28,170 tons to the south, and the cumulative salt load at the Coinjock site was -872,750 tons to the north.The cumulative salt load passing the West Neck Creek site during the study period would be 0.01 part per thousand if uniformly distributed throughout the sound (approximately 489,600 acre-feet in North Carolina). If the cumulative salt load passing the Coinjock site were uniformly distributed throughout the sound, the salinity in the sound would be 0.32 part per thousand. The net transport at the West Neck Creek and Coinjock sites indicates inflow of salt into the sound. A constant inflow of freshwater from tributaries and ground-water sources also occurs; however, the net flow volumes from these freshwater sources are not documented, and the significance of these freshwater inflows toward diluting the net import of salt into the sound is beyond the scope of this study.

Relations of water-quality constituent concentrations to surrogate measurements in the lower Platte River corridor, Nebraska, 2007 through 2011

USGS Publications Warehouse

Schaepe, Nathaniel J.; Soenksen, Philip J.; Rus, David L.

2014-01-01

The lower Platte River, Nebraska, provides drinking water, irrigation water, and in-stream flows for recreation, wildlife habitat, and vital habitats for several threatened and endangered species. The U.S. Geological Survey (USGS), in cooperation with the Lower Platte River Corridor Alliance (LPRCA) developed site-specific regression models for water-quality constituents at four sites (Shell Creek near Columbus, Nebraska [USGS site 06795500]; Elkhorn River at Waterloo, Nebr. [USGS site 06800500]; Salt Creek near Ashland, Nebr. [USGS site 06805000]; and Platte River at Louisville, Nebr. [USGS site 06805500]) in the lower Platte River corridor. The models were developed by relating continuously monitored water-quality properties (surrogate measurements) to discrete water-quality samples. These models enable existing web-based software to provide near-real-time estimates of stream-specific constituent concentrations to support natural resources management decisions. Since 2007, USGS, in cooperation with the LPRCA, has continuously monitored four water-quality properties seasonally within the lower Platte River corridor: specific conductance, water temperature, dissolved oxygen, and turbidity. During 2007 through 2011, the USGS and the Nebraska Department of Environmental Quality collected and analyzed discrete water-quality samples for nutrients, major ions, pesticides, suspended sediment, and bacteria. These datasets were used to develop the regression models. This report documents the collection of these various water-quality datasets and the development of the site-specific regression models. Regression models were developed for all four monitored sites. Constituent models for Shell Creek included nitrate plus nitrite, total phosphorus, orthophosphate, atrazine, acetochlor, suspended sediment, and Escherichia coli (E. coli) bacteria. Regression models that were developed for the Elkhorn River included nitrate plus nitrite, total Kjeldahl nitrogen, total phosphorus, orthophosphate, chloride, atrazine, acetochlor, suspended sediment, and E. coli. Models developed for Salt Creek included nitrate plus nitrite, total Kjeldahl nitrogen, suspended sediment, and E. coli. Lastly, models developed for the Platte River site included total Kjeldahl nitrogen, total phosphorus, sodium, metolachlor, atrazine, acetochlor, suspended sediment, and E. coli.

Non-Linear Interactions between Consumers and Flow Determine the Probability of Plant Community Dominance on Maine Rocky Shores

PubMed Central

Silliman, Brian R.; McCoy, Michael W.; Trussell, Geoffrey C.; Crain, Caitlin M.; Ewanchuk, Patrick J.; Bertness, Mark D.

2013-01-01

Although consumers can strongly influence community recovery from disturbance, few studies have explored the effects of consumer identity and density and how they may vary across abiotic gradients. On rocky shores in Maine, recent experiments suggest that recovery of plant- or animal- dominated community states is governed by rates of water movement and consumer pressure. To further elucidate the mechanisms of consumer control, we examined the species-specific and density-dependent effects of rocky shore consumers (crabs and snails) on community recovery under both high (mussel dominated) and low flow (plant dominated) conditions. By partitioning the direct impacts of predators (crabs) and grazers (snails) on community recovery across a flow gradient, we found that grazers, but not predators, are likely the primary agent of consumer control and that their impact is highly non-linear. Manipulating snail densities revealed that herbivorous and bull-dozing snails (Littorina littorea) alone can control recovery of high and low flow communities. After ∼1.5 years of recovery, snail density explained a significant amount of the variation in macroalgal coverage at low flow sites and also mussel recovery at high flow sites. These density-dependent grazer effects were were both non-linear and flow-dependent, with low abundance thresholds needed to suppress plant community recovery, and much higher levels needed to control mussel bed development. Our study suggests that consumer density and identity are key in regulating both plant and animal community recovery and that physical conditions can determine the functional forms of these consumer effects. PMID:23940510

Drought and detritivores determine leaf litter decomposition in calcareous streams of the Ebro catchment (Spain).

PubMed

Monroy, Silvia; Menéndez, Margarita; Basaguren, Ana; Pérez, Javier; Elosegi, Arturo; Pozo, Jesús

2016-12-15

Drought, an important environmental factor affecting the functioning of stream ecosystems, is likely to become more prevalent in the Mediterranean region as a consequence of climate change and enhanced water demand. Drought can have profound impacts on leaf litter decomposition, a key ecosystem process in headwater streams, but there is still limited information on its effects at the regional scale. We measured leaf litter decomposition across a gradient of aridity in the Ebro River basin. We deployed coarse- and fine-mesh bags with alder and oak leaves in 11 Mediterranean calcareous streams spanning a range of over 400km, and determined changes in discharge, water quality, leaf-associated macroinvertebrates, leaf quality and decomposition rates. The study streams were subject to different degrees of drought, specific discharge (Ls -1 km -2 ) ranging from 0.62 to 9.99. One of the streams dried out during the experiment, another one reached residual flow, whereas the rest registered uninterrupted flow but with different degrees of flow variability. Decomposition rates differed among sites, being lowest in the 2 most water-stressed sites, but showed no general correlation with specific discharge. Microbial decomposition rates were not correlated with final nutrient content of litter nor to fungal biomass. Total decomposition rate of alder was positively correlated to the density and biomass of shredders; that of oak was not. Shredder density in alder bags showed a positive relationship with specific discharge during the decomposition experiment. Overall, the results point to a complex pattern of litter decomposition at the regional scale, as drought affects decomposition directly by emersion of bags and indirectly by affecting the functional composition and density of detritivores. Copyright © 2016 The Authors. Published by Elsevier B.V. All rights reserved.

Overland flow, sediment output and nutrient loss from certain forested sites in the central Himalaya, India

NASA Astrophysics Data System (ADS)

Pathak, P. C.; Pandey, A. N.; Singh, J. S.

1984-03-01

Overland flow, sediment output and input and output of precipitation nutrients were evaluated on six forested sites in the central Himalaya during the 1981 and 1982 monsoon seasons. Overland flow was significantly different across the forests and the months of the rainy season. It was positively related with rainfall quantity and intensity, and was negatively related with tree canopy cover and with ground vegetation cover. Average overland flow was only 0.66% of the total incident rainfall, indicating that these sites are subsurface-flow systems. Sediment output was positively related to overland flow. Rainfall added a significant amount of nutrients to the forests. This extra-system input was greater than loss through overland flow + sediment output. The loss of nutrients from the forested sites was in the order: Mg > C > Ca > K = N = P.

Cilia induced cerebrospinal fluid flow in the third ventricle of brain

NASA Astrophysics Data System (ADS)

Wang, Yong; Westendorf, Christian; Faubel, Regina; Eichele, Gregor; Bodenschatz, Eberhard

2016-11-01

Cerebrospinal fluid (CSF) conveys many physiologically important signaling factors through the ventricles of the mammalian brain. The walls of the ventricles are covered with motile cilia that were thought to generate a laminar flow purely following the curvature of walls. However, we recently discovered that cilia of the ventral third ventricle (v3V) generate a complex flow network along the wall, leading to subdivision of the v3V. The contribution of such cilia induced flow to the overall three dimensional volume flow remains to be investigated by using numerical simulation, arguably the best approach for such investigations. The lattice Boltzmann method is used to study the CFS flow in a reconstructed geometry of the v3V. Simulation of CSF flow neglecting cilia in this geometry confirmed that the previous idea about pure confined flow does not reflect the reality observed in experiment. The experimentally recorded ciliary flow network along the wall was refined with the smoothed particle hydrodynamics and then adapted as boundary condition in simulation. We study the contribution of the ciliary network to overall CSF flow and identify site-specific delivery of CSF constituents with respect to the temporal changes.

Analysis of low flows and selected methods for estimating low-flow characteristics at partial-record and ungaged stream sites in western Washington

USGS Publications Warehouse

Curran, Christopher A.; Eng, Ken; Konrad, Christopher P.

2012-01-01

Regional low-flow regression models for estimating Q7,10 at ungaged stream sites are developed from the records of daily discharge at 65 continuous gaging stations (including 22 discontinued gaging stations) for the purpose of evaluating explanatory variables. By incorporating the base-flow recession time constant τ as an explanatory variable in the regression model, the root-mean square error for estimating Q7,10 at ungaged sites can be lowered to 72 percent (for known values of τ), which is 42 percent less than if only basin area and mean annual precipitation are used as explanatory variables. If partial-record sites are included in the regression data set, τ must be estimated from pairs of discharge measurements made during continuous periods of declining low flows. Eight measurement pairs are optimal for estimating τ at partial-record sites, and result in a lowering of the root-mean square error by 25 percent. A low-flow survey strategy that includes paired measurements at partial-record sites requires additional effort and planning beyond a standard strategy, but could be used to enhance regional estimates of τ and potentially reduce the error of regional regression models for estimating low-flow characteristics at ungaged sites.

Mass Transport and Shear Stress in the Carotid Artery Bifurcation

NASA Astrophysics Data System (ADS)

Gorder, Riley; Aliseda, Alberto

2010-11-01

The carotid artery bifurcation (CAB) is one of the leading sites for atherosclerosis, a major cause of death and disability in the developed world. The specific processes by which the complex flow found at the bifurcation and carotid sinus promotes plaque formation and growth are not fully understood. Shear stress, mass transport, and flow residence times are considered key factors. Although the governing equations closely link shear stress and mass transfer, the pulsatile, transitional, and detached flow found at the CAB can lead to differences between regions of WSS and mass transfer statistics. In this study, CAB geometries are reconstructed from patient specific 3D ultrasound medical imaging. Using ANSYS FLUENT, the fluid flow and scalar transport was solved using realistic flow conditions and various mass transfer boundary conditions. The spatial and temporal resolution was validated against the analytical solution of the Graetz-Nusselt problem with constant wall flux to ensure the scalar transport is resolved for a Peclet number up to 100,000. High residence time regions are investigated by determining the number of cardiac cycles required to flush out the carotid sinus. The correlations between regions of low WSS, high OSI, and scalar concentration are computed and interpreted in the context of atherosclerotic plaque origin and progression.

Effects of stream flow intermittency on riparian vegetation of a semiarid region river (San Pedro River, Arizona)

USGS Publications Warehouse

Stromberg, J.C.; Bagstad, K.J.; Leenhouts, J.M.; Lite, S.J.; Makings, E.

2005-01-01

The San Pedro River in the southwestern United States retains a natural flood regime and has several reaches with perennial stream flow and shallow ground water. However, much of the river flows intermittently. Urbanization-linked declines in regional ground-water levels have raised concerns over the future status of the riverine ecosystem in some parts of the river, while restoration-linked decreases in agricultural ground-water pumping are expected to increase stream flows in other parts. This study describes the response of the streamside herbaceous vegetation to changes in stream flow permanence. During the early summer dry season, streamside herbaceous cover and species richness declined continuously across spatial gradients of flow permanence, and composition shifted from hydric to mesic species at sites with more intermittent flow. Hydrologic threshold values were evident for one plant functional group: Schoenoplectus acutus, Juncus torreyi, and other hydric riparian plants declined sharply in cover with loss of perennial stream flow. In contrast, cover of mesic riparian perennials (including Cynodon dactylon, an introduced species) increased at sites with intermittent flow. Patterns of hydric and mesic riparian annuals varied by season: in the early summer dry season their cover declined continuously as flow became more intermittent, while in the late summer wet season their cover increased as the flow became more intermittent. Periodic drought at the intermittent sites may increase opportunities for establishment of these annuals during the monsoonal flood season. During the late summer flood season, stream flow was present at most sites, and fewer vegetation traits were correlated with flow permanence; cover and richness were correlated with other environmental factors including site elevation and substrate nitrate level and particle size. Although perennial-flow and intermittent-flow sites support different streamside plant communities, all of the plant functional groups are abundant at perennial-flow sites when viewing the ecosystem at broader spatial and temporal scales: mesic riparian perennials are common in the floodplain zone adjacent to the river channel and late-summer hydric and mesic annuals are periodically abundant after large floods. Copyright ?? 2005 John Wiley & Sons, Ltd.

Volatile organic compound (VOC) emissions characterization during the flow-back phase of a hydraulically refractured well in the Uintah Basin, Utah using mobile PTR-MS measurements

NASA Astrophysics Data System (ADS)

Geiger, F.; Warneke, C.; Brown, S. S.; De Gouw, J. A.; Dube, W. P.; Edwards, P.; Gilman, J.; Graus, M.; Helleis, F.; Kofler, J.; Lerner, B. M.; Orphal, J.; Petron, G.; Roberts, J. M.; Zahn, A.

2014-12-01

Ongoing improvements in advanced technologies for crude oil and natural gas extraction from unconventional reserves, such as directional drilling and hydraulic fracturing, have greatly increased the production of fossil fuels within recent years. The latest forecasts even estimate an enhancement of 56% in total natural gas production due to increased development of shale gas, tight gas and offshore natural gas resources from 2012 to 2040 with the largest contribution from shale formations [US EIA: Annual Energy Outlook 2014]. During the field intensive 'Energy and Environment - Uintah Basin Winter Ozone Study (UBWOS)', measurements of volatile organic compounds (VOCs) were made using proton-transfer-reactions mass spectrometry (PTR-MS) at the ground site Horse Pool and using a mobile laboratory in the Uintah Basin, Utah, which is a region well known for intense fossil fuel production. A reworked gas well in the Red Wash fields was sampled regularly within two weeks performing mobile laboratory measurements downwind of the well site. The well had been recently hydraulically refractured at that time and waste water was collected into an open flow-back pond. Very high mixing ratios of aromatic hydrocarbons (C6-C13) up to the ppm range were observed coming from condensate and flow-back reservoirs. The measurements are used to determine sources of specific VOC emissions originating from the different parts of the well site and mass spectra are used to classify the air composition in contrast to samples taken at the Horse Pool field site and crude oil samples from South Louisiana. Enhancement ratios and time series of measured peak values for aromatics showed no clear trend, which indicates changes in emissions with operations at the site.

Methods to Identify Changes in Background Water-Quality Conditions Using Dissolved-Solids Concentrations and Loads as Indicators, Arkansas River and Fountain Creek, in the Vicinity of Pueblo, Colorado

USGS Publications Warehouse

Ortiz, Roderick F.

2004-01-01

Effective management of existing water-storage capacity in the Arkansas River Basin is anticipated to help satisfy the need for water in southeastern Colorado. A strategy to meet these needs has been developed, but implementation could affect the water quality of the Arkansas River and Fountain Creek in the vicinity of Pueblo, Colorado. Because no known methods are available to determine what effects future changes in operations will have on water quality, the U.S. Geological Survey, in cooperation with the Southeastern Colorado Water Activity Enterprise, began a study in 2002 to develop methods that could identify if future water-quality conditions have changed significantly from background (preexisting) water-quality conditions. A method was developed to identify when significant departures from background (preexisting) water-quality conditions occur in the lower Arkansas River and Fountain Creek in the vicinity of Pueblo, Colorado. Additionally, the methods described in this report provide information that can be used by various water-resource agencies for an internet-based decision-support tool. Estimated dissolved-solids concentrations at five sites in the study area were evaluated to designate historical background conditions and to calculate tolerance limits used to identify statistical departures from background conditions. This method provided a tool that could be applied with defined statistical probabilities associated with specific tolerance limits. Drought data from 2002 were used to test the method. Dissolved-solids concentrations exceeded the tolerance limits at all four sites on the Arkansas River at some point during 2002. The number of exceedances was particularly evident when streamflow from Pueblo Reservoir was reduced, and return flows and ground-water influences to the river were more prevalent. No exceedances were observed at the site on Fountain Creek. These comparisons illustrated the need to adjust the concentration data to account for varying streamflow. As such, similar comparisons between flow-adjusted data were done. At the site Arkansas River near Avondale, nearly all the 2002 flow-adjusted concentration data were less than the flow-adjusted tolerance limit which illustrated the effects of using flow-adjusted concentrations. Numerous exceedances of the flow-adjusted tolerance limits, however, were observed at the sites Arkansas River above Pueblo and Arkansas River at Pueblo. These results indicated that the method was able to identify a change in the ratio of source waters under drought conditions. Additionally, tolerance limits were calculated for daily dissolved-solids load and evaluated in a similar manner. Several other mass-load approaches were presented to help identify long-term changes in water quality. These included comparisons of cumulative mass load at selected sites and comparisons of mass load contributed at the Arkansas River near Avondale site by measured and unmeasured sources.

Targeting of Magnetic Nanoparticle-coated Microbubbles to the Vascular Wall Empowers Site-specific Lentiviral Gene Delivery in vivo.

PubMed

Heun, Yvonn; Hildebrand, Staffan; Heidsieck, Alexandra; Gleich, Bernhard; Anton, Martina; Pircher, Joachim; Ribeiro, Andrea; Mykhaylyk, Olga; Eberbeck, Dietmar; Wenzel, Daniela; Pfeifer, Alexander; Woernle, Markus; Krötz, Florian; Pohl, Ulrich; Mannell, Hanna

2017-01-01

In the field of vascular gene therapy, targeting systems are promising advancements to improve site-specificity of gene delivery. Here, we studied whether incorporation of magnetic nanoparticles (MNP) with different magnetic properties into ultrasound sensitive microbubbles may represent an efficient way to enable gene targeting in the vascular system after systemic application. Thus, we associated novel silicon oxide-coated magnetic nanoparticle containing microbubbles (SO-Mag MMB) with lentiviral particles carrying therapeutic genes and determined their physico-chemical as well as biological properties compared to MMB coated with polyethylenimine-coated magnetic nanoparticles (PEI-Mag MMB). While there were no differences between both MMB types concerning size and lentivirus binding, SO-Mag MMB exhibited superior characteristics regarding magnetic moment, magnetizability as well as transduction efficiency under static and flow conditions in vitro . Focal disruption of lentiviral SO-Mag MMB by ultrasound within isolated vessels exposed to an external magnetic field decisively improved localized VEGF expression in aortic endothelium ex vivo and enhanced the angiogenic response. Using the same system in vivo , we achieved a highly effective, site-specific lentiviral transgene expression in microvessels of the mouse dorsal skin after arterial injection. Thus, we established a novel lentiviral MMB technique, which has great potential towards site-directed vascular gene therapy.

Incorporating geologic information into hydraulic tomography: A general framework based on geostatistical approach

NASA Astrophysics Data System (ADS)

Zha, Yuanyuan; Yeh, Tian-Chyi J.; Illman, Walter A.; Onoe, Hironori; Mok, Chin Man W.; Wen, Jet-Chau; Huang, Shao-Yang; Wang, Wenke

2017-04-01

Hydraulic tomography (HT) has become a mature aquifer test technology over the last two decades. It collects nonredundant information of aquifer heterogeneity by sequentially stressing the aquifer at different wells and collecting aquifer responses at other wells during each stress. The collected information is then interpreted by inverse models. Among these models, the geostatistical approaches, built upon the Bayesian framework, first conceptualize hydraulic properties to be estimated as random fields, which are characterized by means and covariance functions. They then use the spatial statistics as prior information with the aquifer response data to estimate the spatial distribution of the hydraulic properties at a site. Since the spatial statistics describe the generic spatial structures of the geologic media at the site rather than site-specific ones (e.g., known spatial distributions of facies, faults, or paleochannels), the estimates are often not optimal. To improve the estimates, we introduce a general statistical framework, which allows the inclusion of site-specific spatial patterns of geologic features. Subsequently, we test this approach with synthetic numerical experiments. Results show that this approach, using conditional mean and covariance that reflect site-specific large-scale geologic features, indeed improves the HT estimates. Afterward, this approach is applied to HT surveys at a kilometer-scale-fractured granite field site with a distinct fault zone. We find that by including fault information from outcrops and boreholes for HT analysis, the estimated hydraulic properties are improved. The improved estimates subsequently lead to better prediction of flow during a different pumping test at the site.

Estimating Discharge and Nonpoint Source Nitrate Loading to Streams From Three End-Member Pathways Using High-Frequency Water Quality Data

NASA Astrophysics Data System (ADS)

Miller, Matthew P.; Tesoriero, Anthony J.; Hood, Krista; Terziotti, Silvia; Wolock, David M.

2017-12-01

The myriad hydrologic and biogeochemical processes taking place in watersheds occurring across space and time are integrated and reflected in the quantity and quality of water in streams and rivers. Collection of high-frequency water quality data with sensors in surface waters provides new opportunities to disentangle these processes and quantify sources and transport of water and solutes in the coupled groundwater-surface water system. A new approach for separating the streamflow hydrograph into three components was developed and coupled with high-frequency nitrate data to estimate time-variable nitrate loads from chemically dilute quick flow, chemically concentrated quick flow, and slowflow groundwater end-member pathways for periods of up to 2 years in a groundwater-dominated and a quick-flow-dominated stream in central Wisconsin, using only streamflow and in-stream water quality data. The dilute and concentrated quick flow end-members were distinguished using high-frequency specific conductance data. Results indicate that dilute quick flow contributed less than 5% of the nitrate load at both sites, whereas 89 ± 8% of the nitrate load at the groundwater-dominated stream was from slowflow groundwater, and 84 ± 25% of the nitrate load at the quick-flow-dominated stream was from concentrated quick flow. Concentrated quick flow nitrate concentrations varied seasonally at both sites, with peak concentrations in the winter that were 2-3 times greater than minimum concentrations during the growing season. Application of this approach provides an opportunity to assess stream vulnerability to nonpoint source nitrate loading and expected stream responses to current or changing conditions and practices in watersheds.

Investigation of polar organic chemical integrative sampler (POCIS) flow rate dependence for munition constituents in underwater environments.

PubMed

Lotufo, Guilherme R; George, Robert D; Belden, Jason B; Woodley, Christa M; Smith, David L; Rosen, Gunther

2018-02-24

Munition constituents (MC) are present in aquatic environments throughout the world. Potential for fluctuating release with low residence times may cause concentrations of MC to vary widely over time at contaminated sites. Recently, polar organic chemical integrative samplers (POCIS) have been demonstrated to be valuable tools for the environmental exposure assessment of MC in water. Flow rate is known to influence sampling by POCIS. Because POCIS sampling rates (R s ) for MC have only been determined under quasi-static conditions, the present study evaluated the uptake of 2,4,6-trinitrotoluene (TNT), RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine), and 2,4- and 2,6-dinitrotoluenes (DNT), by POCIS in a controlled water flume at 7, 15, and 30 cm/s in 10-day experiments using samplers both within and without a protective cage. Sampling rate increased with flow rate for all MC investigated, but flow rate had the strongest impact on TNT and the weakest impact on RDX. For uncaged POCIS, mean R s for 30 cm/s was significantly higher than that for 7 cm by 2.7, 1.9, 1.9, and 1.3 folds for TNT, 2,4-DNT, 2,6-DNT, and RDX, respectively. For all MC except RDX, mean R s for caged POCIS at 7 cm/s were significantly lower than for uncaged samplers and similar to those measured at quasi-static condition, but except for 2,6-DNT, no caging effect was measured at the highest flow rate, indicating that the impact of caging on R s is flow rate-dependent. When flow rates are known, flow rate-specific R s should be used for generating POCIS-derived time-averaged concentrations of MC at contaminated sites.

Predicting streamflow regime metrics for ungauged streamsin Colorado, Washington, and Oregon

NASA Astrophysics Data System (ADS)

Sanborn, Stephen C.; Bledsoe, Brian P.

2006-06-01

Streamflow prediction in ungauged basins provides essential information for water resources planning and management and ecohydrological studies yet remains a fundamental challenge to the hydrological sciences. A methodology is presented for stratifying streamflow regimes of gauged locations, classifying the regimes of ungauged streams, and developing models for predicting a suite of ecologically pertinent streamflow metrics for these streams. Eighty-four streamflow metrics characterizing various flow regime attributes were computed along with physical and climatic drainage basin characteristics for 150 streams with little or no streamflow modification in Colorado, Washington, and Oregon. The diverse hydroclimatology of the study area necessitates flow regime stratification and geographically independent clusters were identified and used to develop separate predictive models for each flow regime type. Multiple regression models for flow magnitude, timing, and rate of change metrics were quite accurate with many adjusted R2 values exceeding 0.80, while models describing streamflow variability did not perform as well. Separate stratification schemes for high, low, and average flows did not considerably improve models for metrics describing those particular aspects of the regime over a scheme based on the entire flow regime. Models for streams identified as 'snowmelt' type were improved if sites in Colorado and the Pacific Northwest were separated to better stratify the processes driving streamflow in these regions thus revealing limitations of geographically independent streamflow clusters. This study demonstrates that a broad suite of ecologically relevant streamflow characteristics can be accurately modeled across large heterogeneous regions using this framework. Applications of the resulting models include stratifying biomonitoring sites and quantifying linkages between specific aspects of flow regimes and aquatic community structure. In particular, the results bode well for modeling ecological processes related to high-flow magnitude, timing, and rate of change such as the recruitment of fish and riparian vegetation across large regions.

Nonstationarity of low flows and their timing in the eastern United States

NASA Astrophysics Data System (ADS)

Sadri, S.; Kam, J.; Sheffield, J.

2016-02-01

The analysis of the spatial and temporal patterns of low flows as well as their generation mechanisms over large geographic regions can provide valuable insights and understanding for climate change impacts, regional frequency analysis, risk assessment of extreme events, and decision-making regarding allowable withdrawals. The goal of this paper is to examine nonstationarity in low flow generation across the eastern US and explore the potential anthropogenic influences or climate drivers. We use nonparametric tests to identify abrupt and gradual changes in time series of low flows and their timing for 508 USGS streamflow gauging sites in the eastern US with more than 50 years of daily data, to systematically distinguish the effects of human intervention from those of climate variability. A time series decomposition algorithm was applied to 1-day, 7-day, 30-day, and 90-day annual low flow time series that combines the Box-Ljung test for detection of autocorrelation, the Pettitt test for abrupt step changes and the Mann-Kendall test for monotonic trends. Examination of the USGS notes for each site showed that many of the sites with step changes and around half of the sites with an increasing trend have been documented as having some kind of regulation. Sites with decreasing or no trend are less likely to have documented influences on flows. Overall, a general pattern of increasing low flows in the northeast and decreasing low flows in the southeast is evident over a common time period (1951-2005), even when discarding sites with significant autocorrelation, documented regulation or other human impacts. The north-south pattern of trends is consistent with changes in antecedent precipitation. The main exception is along the mid-Atlantic coastal aquifer system from eastern Virginia northwards, where low flows have decreased despite increasing precipitation, and suggests that declining groundwater levels due to pumping may have contributed to decreased low flows. For most sites, the majority of low flows occur in one season in the late summer to fall, as driven by the lower precipitation and higher evaporative demand in this season, but this is complicated in many regions because of the presence of a secondary low flow season in the winter for sites in the extreme northeast and in the spring for sites in Florida. Trends in low flow timing are generally undetectable, although abrupt step changes appear to be associated with regulation.

Integrating understanding of hydrology, geomorphology and ecology to better predict periphyton abundance in New Zealand rivers

NASA Astrophysics Data System (ADS)

Hoyle, Jo; Kilroy, Cathy; Hicks, Murray

2015-04-01

Periphyton (the algae dominated community that grows on the bed of rivers) provide a rich food source for the upper trophic levels of stream ecosystems and can also provide an important ecological service by removing dissolved nutrients and contaminants from the flow. However, in excess, periphyton can have negative effects on habitat quality, water chemistry and biodiversity, and can reduce recreation and aesthetic values. The abundance of periphyton in rivers is influenced by a number of factors, but the two key factors that can be directly influenced by human activities are flow regime and nutrient concentrations. River managers in New Zealand are required to set objectives for periphyton abundance that meet or exceed national bottom lines, and they then need to set limits on freshwater quality and quantity in their region to ensure these objectives are met. Consequently, the ability to predict periphyton abundance under different conditions is crucial for management of rivers to protect ecological and other values. Establishing quantitative relationships between periphyton abundance, hydrologic regimes and nutrient concentrations has proven to be difficult but remains an urgent priority in New Zealand. A common index for predicting periphyton abundance has been the frequency of floods greater than 3 times the median flow (FRE3), and this has been successful on a regional average but can be quite unreliable on a site-specific basis. This stems largely from our limited ability to transform flow data into ecologically meaningful physical processes that directly affect periphyton removal (e.g., drag, abrasion, bed movement). The research we will present examines whether geomorphic variables, such as frequency of bed movement, are useful co-predictors in periphyton abundance-flow-nutrient relationships. We collected data on channel topography and bed material size for 20 reaches in the Manawatu-Wanganui Region which have at least 5 years of flow, nutrient concentration and periphyton biomass data (laboratory measures of chlorophyll a and percentage cover of thin films, filaments and mats/sludge). For each reach we set up a 1-d hydraulic model and established relationships between discharge and a number of hydraulic and geomorphic variables, including the discharge required to partially and fully mobilise the bed sediment. These were then related to the flow and periphyton monitoring records to examine the strength of relationships. Relating periphyton biomass data to antecedent flow data allowed us to identify threshold flows for periphyton removal. These flows were found to be 0.9 - 9.8 times the median flow, depending on the site, with the average across sites being 3.3 times the median flow. Results also showed that general mobility of the gravelly/cobbly bed material was not required to remove periphyton but that mobility of over-passing sand (through its abrasive action) is a key control on periphyton abundance. Relationships between soluble inorganic nitrogen and periphyton abundance were found to be strong at sites where sand is mobilized infrequently but weak at sites where sand is mobilized often. Overall results indicate that integrating understanding of geomorphology, hydrology and ecology can improve prediction of periphyton abundance in New Zealand rivers.

Dynamic measurements of flowing cells labeled by gold nanoparticles using full-field photothermal interferometric imaging

NASA Astrophysics Data System (ADS)

Turko, Nir A.; Roitshtain, Darina; Blum, Omry; Kemper, Björn; Shaked, Natan T.

2017-06-01

We present highly dynamic photothermal interferometric phase microscopy for quantitative, selective contrast imaging of live cells during flow. Gold nanoparticles can be biofunctionalized to bind to specific cells, and stimulated for local temperature increase due to plasmon resonance, causing a rapid change of the optical phase. These phase changes can be recorded by interferometric phase microscopy and analyzed to form an image of the binding sites of the nanoparticles in the cells, gaining molecular specificity. Since the nanoparticle excitation frequency might overlap with the sample dynamics frequencies, photothermal phase imaging was performed on stationary or slowly dynamic samples. Furthermore, the computational analysis of the photothermal signals is time consuming. This makes photothermal imaging unsuitable for applications requiring dynamic imaging or real-time analysis, such as analyzing and sorting cells during fast flow. To overcome these drawbacks, we utilized an external interferometric module and developed new algorithms, based on discrete Fourier transform variants, enabling fast analysis of photothermal signals in highly dynamic live cells. Due to the self-interference module, the cells are imaged with and without excitation in video-rate, effectively increasing signal-to-noise ratio. Our approach holds potential for using photothermal cell imaging and depletion in flow cytometry.

Fecal-indicator bacteria in the Newfound Creek watershed, western North Carolina, during a high and low streamflow condition, 2003

USGS Publications Warehouse

Giddings, Elise M.; Oblinger, Carolyn J.

2004-01-01

Water quality in the Newfound Creek watershed has been shown to be affected by bacteria, sediment, and nutrients. In this study, Escherichia coli (E. coli) bacteria were sampled at five sites in Newfound Creek and five tributary sites during low flow on May 28, 2003, and high flow on November 19, 2003. In addition, a subset of five sites was sampled for fecal coliform bacteria, E. coli bacteria in streambed sediments (low flow only), and coliphage virus for serotyping. Coliphage virus serotyping has been used to identify human and animal sources of bacterial contamination. A streamflow gage was installed and operated to support ongoing water-quality studies in the watershed. Fecal coliform densities ranged from 92 to 27,000 colony-forming units per 100 milliliters of water for E. coli and 140 to an estimated 29,000 colony-forming units per 100 milliliters of water for fecal coliform during the two sampling visits. Ninety percent of the E. coli and fecal coliform samples exceeded corresponding U.S. Environmental Protection Agency or North Carolina water-quality criteria for recreational and ambient waters. During low flow, the middle part of the Newfound Creek watershed and the Dix Creek tributary had the highest densities of E. coli bacteria. During the high-flow sampling, all tributaries contained high densities of E. coli bacteria, although Dix Creek and Round Hill Branch were the largest contributors of these bacteria to Newfound Creek. Coliphage virus serotyping results were inconclusive because most samples did not contain the male-specific RNA coliphage needed for serotyping. Positive results indicated, however, that during low flow, non-human sources of bacteria were present in Sluder Branch, and during high flow, human sources of bacteria were present in Round Hill Branch. Sampling of bacteria in streambed sediments during low flow indicated that sediments do not appear to be a substantial source of bacteria relative to the water column, with the exception of an area near the confluence of Sluder Branch and Newfound Creek.

Techniques for estimating 7-day, 10-year low-flow characteristics for ungaged sites on streams in Mississippi

USGS Publications Warehouse

Telis, Pamela A.

1992-01-01

Mississippi State water laws require that the 7-day, 10-year low-flow characteristic (7Q10) of streams be used as a criterion for issuing wastedischarge permits to dischargers to streams and for limiting withdrawals of water from streams. This report presents techniques for estimating the 7Q10 for ungaged sites on streams in Mississippi based on the availability of baseflow discharge measurements at the site, location of nearby gaged sites on the same stream, and drainage area of the ungaged site. These techniques may be used to estimate the 7Q10 at sites on natural, unregulated or partially regulated, and non-tidal streams. Low-flow characteristics for streams in the Mississippi River alluvial plain were not estimated because the annual lowflow data exhibit decreasing trends with time. Also presented are estimates of the 7Q10 for 493 gaged sites on Mississippi streams.Techniques for estimating the 7Q10 have been developed for ungaged sites with base-flow discharge measurements, for ungaged sites on gaged streams, and for ungaged sites on ungaged streams. For an ungaged site with one or more base-flow discharge measurements, base-flow discharge data at the ungaged site are related to concurrent discharge data at a nearby gaged site. For ungaged sites on gaged streams, several methods of transferring the 7Q10 from a gaged site to an ungaged site were developed; the resulting 7Q10 values are based on drainage area prorations for the sites. For ungaged sites on ungaged streams, the 7Q10 is estimated from a map developed for. this study that shows the unit 7Q10 (7Q10 per square mile of drainage area) for ungaged basins in the State. The mapped values were estimated from the unit 7Q10 determined for nearby gaged basins, adjusted on the basis of the geology and topography of the ungaged basins.

Clearing the waters: Evaluating the need for site-specific field fluorescence corrections based on turbidity measurements

USGS Publications Warehouse

Saraceno, John F.; Shanley, James B.; Downing, Bryan D.; Pellerin, Brian A.

2017-01-01

In situ fluorescent dissolved organic matter (fDOM) measurements have gained increasing popularity as a proxy for dissolved organic carbon (DOC) concentrations in streams. One challenge to accurate fDOM measurements in many streams is light attenuation due to suspended particles. Downing et al. (2012) evaluated the need for corrections to compensate for particle interference on fDOM measurements using a single sediment standard in a laboratory study. The application of those results to a large river improved unfiltered field fDOM accuracy. We tested the same correction equation in a headwater tropical stream and found that it overcompensated fDOM when turbidity exceeded ∼300 formazin nephelometric units (FNU). Therefore, we developed a site-specific, field-based fDOM correction equation through paired in situ fDOM measurements of filtered and unfiltered streamwater. The site-specific correction increased fDOM accuracy up to a turbidity as high as 700 FNU, the maximum observed in this study. The difference in performance between the laboratory-based correction equation of Downing et al. (2012) and our site-specific, field-based correction equation likely arises from differences in particle size distribution between the sediment standard used in the lab (silt) and that observed in our study (fine to medium sand), particularly during high flows. Therefore, a particle interference correction equation based on a single sediment type may not be ideal when field sediment size is significantly different. Given that field fDOM corrections for particle interference under turbid conditions are a critical component in generating accurate DOC estimates, we describe a way to develop site-specific corrections.

Monitoring suspended sediment and associated trace element and nutrient fluxes in large river basins in the USA

USGS Publications Warehouse

Horowitz, A.J.

2004-01-01

In 1996, the US Geological Survey converted its occurrence and distribution-based National Stream Quality Accounting Network (NASQAN) to a national, flux-based water-quality monitoring programme. The main objective of the revised programme is to characterize large USA river basins by measuring the fluxes of selected constituents at critical nodes in various basins. Each NASQAN site was instrumented to determine daily discharge, but water and suspended sediment samples are collected no more than 12-15 times per year. Due to the limited sampling programme, annual suspended sediment fluxes were determined from site-specific sediment rating (transport) curves. As no significant relationship could be found between either discharge or suspended sediment concentration (SSC) and suspended sediment chemistry, trace element and nutrient fluxes are estimated using site-specific mean or median chemical levels determined from a number of samples collected over a period of years, and under a variety of flow conditions.

Riparian restoration in the context of Tamarix control in the western United States: Chapter 23

USGS Publications Warehouse

Shafroth, Patrick B.; Merritt, David M.; Briggs, Mark K.; Beauchamp, Vanessa B.; Lair, Kenneth D.; Scott, Michael L.; Sher, Anna; Sher, Anna; Quigley, Martin F.

2013-01-01

This chapter focuses on the restoration of riparian systems in the context of Tamarix control—that is, Tamarix-dominated sites are converted to a replacement vegetation type that achieves specific management goals and helps return parts of the system to a desired and more natural state or dynamic. It reviews research related to restoring native riparian vegetation following tamarix control or removal. The chapter begins with an overview of objective setting and the planning of tamarix control and proceeds by emphasizing the importance of considering site-specific factors and of context in selecting and prioritizing sites for restoration. In particular, it considers valley and bottomland geomorphology, along with river flow regime and associated fluvial disturbance, surface water and groundwater availability, and soil salinity and texture. The chapter concludes with a discussion of costs and benefits associated with active, passive, and combined ecological restoration approaches, as well as the key issues to consider in carrying out restoration projects at a range of scales.

Ground-water/surface-water relations along Honey Creek, Washtenaw County, Michigan, 2003

USGS Publications Warehouse

Healy, Denis F.

2005-01-01

The U.S. Geological Survey (USGS), in cooperation with the city of Ann Arbor, Mich., investigated the ground-water/ surface-water relations along the lower reaches of Honey Creek, Washtenaw County, Mich., and an unnamed tributary to Honey Creek (the discharge tributary) from June through October 2003. Streamflow in these reaches was artificially high during a naturally low-flow period due to an anthropogenic discharge. Ground-water/surface-water relations were examined by seepage runs (series of streamflow measurements for the computation of streams gains or losses) and measurements of the difference in head between the stream surface and shallow aquifer. Specific conductance and water-temperature measurements were used as ancillary data to help identify gaining and losing reaches. Three seepage runs and four runs in which hydraulic-head differences between the stream and shallow aquifer were measured (piezometer runs) were made during periods of base flow. Streamflow measurements were made at 18 sites for the seepage runs. Instream piezometers were installed at 16 sites and bank piezometers were installed at 2 sites. Two deeper instream piezometers were installed at site 13 on September 4, 2003 to collect additional data on the ground-water/surface-water relations at that site. The seepage runs indicate that the main stem of Honey Creek and the discharge tributary in the study area are overall gaining reaches. The seepage runs also indicate that smaller reaches of Honey Creek and the discharge tributary may be losing reaches and that this relation may change over time with changing hydraulic conditions. The piezometer-run measurements support the seepage-run results on the main stem, whereas piezometer-run measurements both support and conflict with seepage-run measurements on the discharge tributary. Seepage runs give an average for the reach, whereas piezometer head-difference measurements are for a specific area around the piezometer. Data that may appear to be conflicting actually may be showing that within a gaining reach there are localized areas that lose streamflow. The overall gain in streamflow along with specific measurements of head differences, specific conductance, and water temperature indicate that ground water is discharging to Honey Creek and the discharge tributary. Although reaches and areas that lose streamflow have been identified, data collected during this study cannot confirm or disprove that the loss is to the regional ground-water system.

Catchment-wide impacts on water quality: the use of 'snapshot' sampling during stable flow

NASA Astrophysics Data System (ADS)

Grayson, R. B.; Gippel, C. J.; Finlayson, B. L.; Hart, B. T.

1997-12-01

Water quality is usually monitored on a regular basis at only a small number of locations in a catchment, generally focused at the catchment outlet. This integrates the effect of all the point and non-point source processes occurring throughout the catchment. However, effective catchment management requires data which identify major sources and processes. As part of a wider study aimed at providing technical information for the development of integrated catchment management plans for a 5000 km 2 catchment in south eastern Australia, a 'snapshot' of water quality was undertaken during stable summer flow conditions. These low flow conditions exist for long periods so water quality at these flow levels is an important constraint on the health of in-stream biological communities. Over a 4 day period, a study of the low flow water quality characteristics throughout the Latrobe River catchment was undertaken. Sixty-four sites were chosen to enable a longitudinal profile of water quality to be established. All tributary junctions and sites along major tributaries, as well as all major industrial inputs were included. Samples were analysed for a range of parameters including total suspended solids concentration, pH, dissolved oxygen, electrical conductivity, turbidity, flow rate and water temperature. Filtered and unfiltered samples were taken from 27 sites along the main stream and tributary confluences for analysis of total N, NH 4, oxidised N, total P and dissolved reactive P concentrations. The data are used to illustrate the utility of this sampling methodology for establishing specific sources and estimating non-point source loads of phosphorous, total suspended solids and total dissolved solids. The methodology enabled several new insights into system behaviour including quantification of unknown point discharges, identification of key in-stream sources of suspended material and the extent to which biological activity (phytoplankton growth) affects water quality. The costs and benefits of the sampling exercise are reviewed.

Transient Inverse Calibration of Site-Wide Groundwater Model to Hanford Operational Impacts from 1943 to 1996--Alternative Conceptual Model Considering Interaction with Uppermost Basalt Confined Aquifer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vermeul, Vincent R.; Cole, Charles R.; Bergeron, Marcel P.

2001-08-29

The baseline three-dimensional transient inverse model for the estimation of site-wide scale flow parameters, including their uncertainties, using data on the transient behavior of the unconfined aquifer system over the entire historical period of Hanford operations, has been modified to account for the effects of basalt intercommunication between the Hanford unconfined aquifer and the underlying upper basalt confined aquifer. Both the baseline and alternative conceptual models (ACM-1) considered only the groundwater flow component and corresponding observational data in the 3-Dl transient inverse calibration efforts. Subsequent efforts will examine both groundwater flow and transport. Comparisons of goodness of fit measures andmore » parameter estimation results for the ACM-1 transient inverse calibrated model with those from previous site-wide groundwater modeling efforts illustrate that the new 3-D transient inverse model approach will strengthen the technical defensibility of the final model(s) and provide the ability to incorporate uncertainty in predictions related to both conceptual model and parameter uncertainty. These results, however, indicate that additional improvements are required to the conceptual model framework. An investigation was initiated at the end of this basalt inverse modeling effort to determine whether facies-based zonation would improve specific yield parameter estimation results (ACM-2). A description of the justification and methodology to develop this zonation is discussed.« less

Determining the effects of dams on subdaily variation in river flows at a whole-basin scale

USGS Publications Warehouse

Zimmerman, J.K.H.; Letcher, B.H.; Nislow, K.H.; Lutz, K.A.; Magilligan, F.J.

2010-01-01

River regulation can alter the frequency and magnitude of subdaily flow variations causing major impacts on ecological structure and function. We developed an approach to quantify subdaily flow variation for multiple sites across a large watershed to assess the potential impacts of different dam operations (flood control, run-of-river hydropower and peaking hydropower) on natural communities. We used hourly flow data over a 9-year period from 30 stream gages throughout the Connecticut River basin to calculate four metrics of subdaily flow variation and to compare sites downstream of dams with unregulated sites. Our objectives were to (1) determine the temporal scale of data needed to characterize subdaily variability; (2) compare the frequency of days with high subdaily flow variation downstream of dams and unregulated sites; (3) analyse the magnitude of subdaily variation at all sites and (4) identify individual sites that had subdaily variation significantly higher than unregulated locations. We found that estimates of flow variability based on daily mean flow data were not sufficient to characterize subdaily flow patterns. Alteration of subdaily flows was evident in the number of days natural ranges of variability were exceeded, rather than in the magnitude of subdaily variation, suggesting that all rivers may exhibit highly variable subdaily flows, but altered rivers exhibit this variability more frequently. Peaking hydropower facilities had the most highly altered subdaily flows; however, we observed significantly altered ranges of subdaily variability downstream of some flood-control and run-of-river hydropower dams. Our analysis can be used to identify situations where dam operating procedures could be modified to reduce the level of hydrologic alteration. ?? 2009 John Wiley & Sons, Ltd.

Potential flood hazards and hydraulic characteristics of distributary-flow areas in Maricopa County, Arizona

USGS Publications Warehouse

Hjalmarson, H.W.

1994-01-01

Flood hazards of distributary-flow areas in Maricopa County, Arizona, can be distinguished on the basis of morphological features. Five distributary-flow areas represent the range of flood-hazard degree in the study area. Descriptive factors, including the presence of desert varnish and the absence of saguaro cactus, are more useful than traditional hydraulic-based methods in defining hazards. The width, depth, and velocity exponents of the hydraulic-geometry relations at the primary diffluences of the sites are similar to theoretical exponents for streams with cohesive bank material and the average exponents of stream channels in other areas in the United States. Because of the unexplained scatter of the values of the exponent of channel width, however, the use of average hydraulic-geometry relations is con- sidered inappropriate for characterizing flood hazards for specific distributary-flow in Maricopa County. No evidence has been found that supports the use of stochastic modeling of flows or flood hazards of many distributary-flow areas. The surface of many distributary-flow areas is stable with many distributary channels eroded in the calcreted surface material. Many distributary- flow areas do not appear to be actively aggrading today, and the paths of flow are not changing.

Colorado Heat Flow Data from IHFC

DOE Data Explorer

Richard E. Zehner

2012-02-01

This layer contains the heat flow sites and data of the State of Colorado compiled from the International Heat Flow Commission (IHFC) of the International Association of Seismology and Physics of the Earth's Interior (IASPEI) global heat flow database (www.heatflow.und.edu/index2.html). The data include different items: Item number, descriptive code, name of site, latitude and longitude, elevation, depth interval, number of temperature data, temperature gradient, number of conductivity measurement, average conductivity, number of heat generation measurements, average heat production, heat flow, number of individual sites, references, and date of publication.

Optimal hydrograph separation using a recursive digital filter constrained by chemical mass balance, with application to selected Chesapeake Bay watersheds

USGS Publications Warehouse

Raffensperger, Jeff P.; Baker, Anna C.; Blomquist, Joel D.; Hopple, Jessica A.

2017-06-26

Quantitative estimates of base flow are necessary to address questions concerning the vulnerability and response of the Nation’s water supply to natural and human-induced change in environmental conditions. An objective of the U.S. Geological Survey National Water-Quality Assessment Project is to determine how hydrologic systems are affected by watershed characteristics, including land use, land cover, water use, climate, and natural characteristics (geology, soil type, and topography). An important component of any hydrologic system is base flow, generally described as the part of streamflow that is sustained between precipitation events, fed to stream channels by delayed (usually subsurface) pathways, and more specifically as the volumetric discharge of water, estimated at a measurement site or gage at the watershed scale, which represents groundwater that discharges directly or indirectly to stream reaches and is then routed to the measurement point.Hydrograph separation using a recursive digital filter was applied to 225 sites in the Chesapeake Bay watershed. The recursive digital filter was chosen for the following reasons: it is based in part on the assumption that groundwater acts as a linear reservoir, and so has a physical basis; it has only two adjustable parameters (alpha, obtained directly from recession analysis, and beta, the maximum value of the base-flow index that can be modeled by the filter), which can be determined objectively and with the same physical basis of groundwater reservoir linearity, or that can be optimized by applying a chemical-mass-balance constraint. Base-flow estimates from the recursive digital filter were compared with those from five other hydrograph-separation methods with respect to two metrics: the long-term average fraction of streamflow that is base flow, or base-flow index, and the fraction of days where streamflow is entirely base flow. There was generally good correlation between the methods, with some biased slightly high and some biased slightly low compared to the recursive digital filter. There were notable differences between the days at base flow estimated by the different methods, with the recursive digital filter having a smaller range of values. This was attributed to how the different methods determine cessation of quickflow (the part of streamflow which is not base flow).For 109 Chesapeake Bay watershed sites with available specific conductance data, the parameters of the filter were optimized using a chemical-mass-balance constraint and two different models for the time-dependence of base-flow specific conductance. Sixty-seven models were deemed acceptable and the results compared well with non-optimized results. There are a number of limitations to the optimal hydrograph-separation approach resulting from the assumptions implicit in the conceptual model, the mathematical model, and the approach taken to impose chemical mass balance (including tracer choice). These limitations may be evidenced by poor model results; conversely, poor model fit may provide an indication that two-component separation does not adequately describe the hydrologic system’s runoff response.The results of this study may be used to address a number of questions regarding the role of groundwater in understanding past changes in stream-water quality and forecasting possible future changes, such as the timing and magnitude of land-use and management practice effects on stream and groundwater quality. Ongoing and future modeling efforts may benefit from the estimates of base flow as calibration targets or as a means to filter chemical data to model base-flow loads and trends. Ultimately, base-flow estimation might provide the basis for future work aimed at improving the ability to quantify groundwater discharge, not only at the scale of a gaged watershed, but at the scale of individual reaches as well.

SU-D-BRC-02: Application of Six Sigma Approach to Improve the Efficiency of Patient-Specific QA in Proton Therapy

DOE Office of Scientific and Technical Information (OSTI.GOV)

LAH, J; Shin, D; Manger, R

Purpose: To show how the Six Sigma DMAIC (Define-Measure-Analyze-Improve-Control) can be used for improving and optimizing the efficiency of patient-specific QA process by designing site-specific range tolerances. Methods: The Six Sigma tools (process flow diagram, cause and effect, capability analysis, Pareto chart, and control chart) were utilized to determine the steps that need focus for improving the patient-specific QA process. The patient-specific range QA plans were selected according to 7 treatment site groups, a total of 1437 cases. The process capability index, Cpm was used to guide the tolerance design of patient site-specific range. We also analyzed the financial impactmore » of this project. Results: Our results suggested that the patient range measurements were non-capable at the current tolerance level of ±1 mm in clinical proton plans. The optimized tolerances were calculated for treatment sites. Control charts for the patient QA time were constructed to compare QA time before and after the new tolerances were implemented. It is found that overall processing time was decreased by 24.3% after establishing new site-specific range tolerances. The QA failure for whole process in proton therapy would lead up to a 46% increase in total cost. This result can also predict how costs are affected by changes in adopting the tolerance design. Conclusion: We often believe that the quality and performance of proton therapy can easily be improved by merely tightening some or all of its tolerance requirements. This can become costly, however, and it is not necessarily a guarantee of better performance. The tolerance design is not a task to be undertaken without careful thought. The Six Sigma DMAIC can be used to improve the QA process by setting optimized tolerances. When tolerance design is optimized, the quality is reasonably balanced with time and cost demands.« less

Some Characteristics of Dust Particles in Atmosphere of Kemerovo City According to Pollution Data of Snow Cover

NASA Astrophysics Data System (ADS)

Golokhvast, K. S.; Manakov, Yu A.; Bykov, A. A.; Chayka, V. V.; Nikiforov, P. A.; Rogulin, R. S.; Romanova, T. Yu; Karabtsov, A. A.; Semenikhin, V. A.

2017-10-01

The given paper presents the study results of solid particles contained in snow samples, taken on 10 sites in Kemerovo city in spring 2013. The sites were chosen in such a way as to prevent particles flow into the snow cover in other ways, except with atmospheric precipitation. Kuzbass Botanical Garden was chosen as the check point. In 7 out of 10 sampling sites on the territory of Kemerovo city the presence of particles that are particularly dangerous for human health was found. In one of the areas the particles of 200-400 nm size and with a specific surface area of 14,813.34 cm2/cm3 were detected in ecologically significant quantity (8%).

Can PET-CT imaging and radiokinetic analyses provide useful clinical information on atypical femoral shaft fracture in osteoporotic patients?

PubMed

Chesnut, C Haile; Chesnut, Charles H

2012-03-01

Atypical femoral shaft fractures are associated with the extended usage of nitrogen-containing bisphosphonates as therapy for osteoporosis. For such fractures, the positron emission tomography (PET) procedure, coupled with computerized tomography (CT), provides a potential imaging modality for defining aspects of the pathogenesis, site specificity, and possible prodromal abnormalities prior to fracture. PET-CT may assess the radiokinetic variables K1 (a putative marker for skeletal blood flow) and Ki (a putative marker for skeletal bone formation), and when combined with PET imaging modalities and CT skeletal site localization, may define the site of such radiokinetic findings. Further studies into the clinical usage of PET-CT in patients with atypical femoral shaft fractures are warranted.

Characterization of Stormflows and Wastewater Treatment-Plant Effluent Discharges on Water Quality, Suspended Sediment, and Stream Morphology for Fountain and Monument Creek Watersheds, Colorado, 1981-2006

USGS Publications Warehouse

Mau, David P.; Stogner, Sr., Robert W.; Edelmann, Patrick

2007-01-01

In 1998, the U.S. Geological Survey, in cooperation with Colorado Springs City Engineering, began a study of the Fountain and Monument Creek watersheds to characterize water quality and suspended-sediment conditions in the watershed for different flow regimes, with an emphasis on characterizing water quality during storm runoff. Water-quality and suspended-sediment samples were collected in the Fountain and Monument Creek watersheds from 1981 through 2006 to evaluate the effects of stormflows and wastewater-treatment effluent on Fountain and Monument Creeks in the Colorado Springs, Colorado, area. Water-quality data were collected at 11 sites between 1981 and 2001, and 14 tributary sites were added in 2003 to increase spatial coverage and characterize water quality throughout the watersheds. Suspended-sediment samples collected daily at 7 sites from 1998 through 2001, 6 sites daily from 2003 through 2006, and 13 tributary sites intermittently from 2003 through 2006 were used to evaluate the effects of stormflow on suspended-sediment concentrations, discharges, and yields. Data were separated into three flow regimes: base flow, normal flow, and stormflow. Stormflow concentrations from 1998 through 2006 were compared to Colorado acute instream standards and, with the exception of a few isolated cases, did not exceed water-quality standards for inorganic constituents that were analyzed. However, stormflow concentrations of both fecal coliform and Escherichia coli (E. coli) frequently exceeded water-quality standards during 1998 through 2006 on main-stem and tributary sites by more than an order of magnitude. There were two sites on Cottonwood Creek, a tributary to Monument Creek, with elevated concentrations of dissolved nitrite plus nitrate: site 07103985 (TbCr), a tributary to Cottonwood Creek and site 07103990 (lower_CoCr), downstream from site 07103985 (TbCr), and near the confluence with Monument Creek. During base-flow and normal-flow conditions, the median concentrations of dissolved nitrite plus nitrate ranged from 5.1 to 6.1 mg/L and were 4 to 7 times larger than concentrations at the nearest upstream site on Monument Creek, site 07103970 (MoCr_Woodmen). The source of these larger dissolved nitrite plus nitrate concentrations has not been identified, but the fact that all measurements had elevated dissolved nitrite plus nitrate concentrations indicates a relatively constant source. Most stormflow concentrations of dissolved trace elements were smaller than concentrations from base-flow or normal-flow samples. However, median concentrations of total arsenic, copper, lead, manganese, nickel, and zinc generally were much larger during periods of stormflow than during base flow or normal flow. Concentrations of dissolved and total copper, total manganese, total nickel, dissolved and total selenium, and dissolved and total zinc ranged from 3 to 27 times larger at site 07103707 (FoCr_8th) than site 07103700 (FoCr_Manitou) during base flow, indicating a large source of trace elements between these two sites. Both of these sites are located on Fountain Creek, upstream from the confluence with Monument Creek. The likely source area is Gold Hill Mesa, a former tailings pile for a gold refinery located just upstream from the confluence with Monument Creek, and upstream from site 07103707 (FoCr_8th). Farther downstream in Fountain Creek, stormflow samples for total copper, manganese, lead, nickel, and zinc were larger at the downstream site near the city of Security, site 07105800 (FoCr_Security), than at the upstream site near Janitell Road, site 07105530 (FoCr_Janitell), compared with other main-stem sites and indicated a relatively large source of these metals between the two sites. Nitrogen, phosphorus, and trace-element loads substantially increased during stormflow. Suspended-sediment concentrations, discharges, and yields associated with stormflow were significantly larger than those associated with normal flow. The Apr

Multisite Evaluation of APEX for Water Quality: I. Best Professional Judgment Parameterization.

PubMed

Baffaut, Claire; Nelson, Nathan O; Lory, John A; Senaviratne, G M M M Anomaa; Bhandari, Ammar B; Udawatta, Ranjith P; Sweeney, Daniel W; Helmers, Matt J; Van Liew, Mike W; Mallarino, Antonio P; Wortmann, Charles S

2017-11-01

The Agricultural Policy Environmental eXtender (APEX) model is capable of estimating edge-of-field water, nutrient, and sediment transport and is used to assess the environmental impacts of management practices. The current practice is to fully calibrate the model for each site simulation, a task that requires resources and data not always available. The objective of this study was to compare model performance for flow, sediment, and phosphorus transport under two parameterization schemes: a best professional judgment (BPJ) parameterization based on readily available data and a fully calibrated parameterization based on site-specific soil, weather, event flow, and water quality data. The analysis was conducted using 12 datasets at four locations representing poorly drained soils and row-crop production under different tillage systems. Model performance was based on the Nash-Sutcliffe efficiency (NSE), the coefficient of determination () and the regression slope between simulated and measured annualized loads across all site years. Although the BPJ model performance for flow was acceptable (NSE = 0.7) at the annual time step, calibration improved it (NSE = 0.9). Acceptable simulation of sediment and total phosphorus transport (NSE = 0.5 and 0.9, respectively) was obtained only after full calibration at each site. Given the unacceptable performance of the BPJ approach, uncalibrated use of APEX for planning or management purposes may be misleading. Model calibration with water quality data prior to using APEX for simulating sediment and total phosphorus loss is essential. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Predicting water table response to rainfall events, central Florida.

PubMed

van Gaalen, J F; Kruse, S; Lafrenz, W B; Burroughs, S M

2013-01-01

A rise in water table in response to a rainfall event is a complex function of permeability, specific yield, antecedent soil-water conditions, water table level, evapotranspiration, vegetation, lateral groundwater flow, and rainfall volume and intensity. Predictions of water table response, however, commonly assume a linear relationship between response and rainfall based on cumulative analysis of water level and rainfall logs. By identifying individual rainfall events and responses, we examine how the response/rainfall ratio varies as a function of antecedent water table level (stage) and rainfall event size. For wells in wetlands and uplands in central Florida, incorporating stage and event size improves forecasting of water table rise by more than 30%, based on 10 years of data. At the 11 sites studied, the water table is generally least responsive to rainfall at smallest and largest rainfall event sizes and at lower stages. At most sites the minimum amount of rainfall required to induce a rise in water table is fairly uniform when the water table is within 50 to 100 cm of land surface. Below this depth, the minimum typically gradually increases with depth. These observations can be qualitatively explained by unsaturated zone flow processes. Overall, response/rainfall ratios are higher in wetlands and lower in uplands, presumably reflecting lower specific yields and greater lateral influx in wetland sites. Pronounced depth variations in rainfall/response ratios appear to correlate with soil layer boundaries, where corroborating data are available. © 2012, The Author(s). Groundwater © 2012, National Ground Water Association.

Allosteric Ligand Binding and Anisotropic Energy Flow in Albumin

NASA Astrophysics Data System (ADS)

Dyer, Brian

2014-03-01

Protein allostery usually involves propagation of local structural changes through the protein to a remote site. Coupling of structural changes at remote sites is thought to occur through anisotropic energy transport, but the nature of this process is poorly understood. We have studied the relationship between allosteric interactions of remote ligand binding sites of the protein and energy flow through the structure of bovine serum albumin (BSA). We applied ultrafast infrared spectroscopy to probe the flow of energy through the protein backbone following excitation of a heater dye, a metalloporphyrin or malachite green, bound to different binding sites in the protein. We observe ballistic flow through the protein structure following input of thermal energy into the flexible ligand binding sites. We also observe anisotropic heat flow through the structure, without local heating of the rigid helix bundles that connect these sites. We will discuss the implications of this efficient energy transport mechanism with regard to the allosteric propagation of binding energy through the connecting helix structures.

Independent Review of Simulation of Net Infiltration for Present-Day and Potential Future Climates

DOE Office of Scientific and Technical Information (OSTI.GOV)

Review Panel: Soroosh Sorooshian, Ph.D., Panel Chairperson, University of California, Irvine; Jan M. H. Hendrickx, Ph.D., New Mexico Institute of Mining and Technology; Binayak P. Mohanty, Ph.D., Texas A&M University

The DOE Office of Civilian Radioactive Waste Management (OCRWM) tasked Oak Ridge Institute for Science and Education (ORISE) with providing an independent expert review of the documented model and prediction results for net infiltration of water into the unsaturated zone at Yucca Mountain. The specific purpose of the model, as documented in the report MDL-NBS-HS-000023, Rev. 01, is “to provide a spatial representation, including epistemic and aleatory uncertainty, of the predicted mean annual net infiltration at the Yucca Mountain site ...” (p. 1-1) The expert review panel assembled by ORISE concluded that the model report does not provide a technicallymore » credible spatial representation of net infiltration at Yucca Mountain. Specifically, the ORISE Review Panel found that: • A critical lack of site-specific meteorological, surface, and subsurface information prevents verification of (i) the net infiltration estimates, (ii) the uncertainty estimates of parameters caused by their spatial variability, and (iii) the assumptions used by the modelers (ranges and distributions) for the characterization of parameters. The paucity of site-specific data used by the modeling team for model implementation and validation is a major deficiency in this effort. • The model does not incorporate at least one potentially important hydrologic process. Subsurface lateral flow is not accounted for by the model, and the assumption that the effect of subsurface lateral flow is negligible is not adequately justified. This issue is especially critical for the wetter climate periods. This omission may be one reason the model results appear to underestimate net infiltration beneath wash environments and therefore imprecisely represent the spatial variability of net infiltration. • While the model uses assumptions consistently, such as uniform soil depths and a constant vegetation rooting depth, such assumptions may not be appropriate for this net infiltration simulation because they oversimplify a complex landscape and associated hydrologic processes, especially since the model assumptions have not been adequately corroborated by field and laboratory observations at Yucca Mountain.« less

Landscape genetics of high mountain frog metapopulations

USGS Publications Warehouse

Murphy, M.A.; Dezzani, R.; Pilliod, D.S.; Storfer, A.

2010-01-01

Explaining functional connectivity among occupied habitats is crucial for understanding metapopulation dynamics and species ecology. Landscape genetics has primarily focused on elucidating how ecological features between observations influence gene flow. Functional connectivity, however, may be the result of both these between-site (landscape resistance) landscape characteristics and at-site (patch quality) landscape processes that can be captured using network based models. We test hypotheses of functional connectivity that include both between-site and at-site landscape processes in metapopulations of Columbia spotted frogs (Rana luteiventris) by employing a novel justification of gravity models for landscape genetics (eight microsatellite loci, 37 sites, n = 441). Primarily used in transportation and economic geography, gravity models are a unique approach as flow (e.g. gene flow) is explained as a function of three basic components: distance between sites, production/attraction (e.g. at-site landscape process) and resistance (e.g. between-site landscape process). The study system contains a network of nutrient poor high mountain lakes where we hypothesized a short growing season and complex topography between sites limit R. luteiventris gene flow. In addition, we hypothesized production of offspring is limited by breeding site characteristics such as the introduction of predatory fish and inherent site productivity. We found that R. luteiventris connectivity was negatively correlated with distance between sites, presence of predatory fish (at-site) and topographic complexity (between-site). Conversely, site productivity (as measured by heat load index, at-site) and growing season (as measured by frost-free period between-sites) were positively correlated with gene flow. The negative effect of predation and positive effect of site productivity, in concert with bottleneck tests, support the presence of source-sink dynamics. In conclusion, gravity models provide a powerful new modelling approach for examining a wide range of both basic and applied questions in landscape genetics.

Dynamic characterisation of the specific surface area for fracture networks

NASA Astrophysics Data System (ADS)

Cvetkovic, V.

2017-12-01

One important application of chemical transport is geological disposal of high-level nuclear waste for which crystalline rock is a prime candidate for instance in Scandinavia. Interconnected heterogeneous fractures of sparsely fractured rock such as granite, act as conduits for transport of dissolved tracers. Fluid flow is known to be highly channelized in such rocks. Channels imply narrow flow paths, adjacent to essentially stagnant water in the fracture and/or the rock matrix. Tracers are transported along channelised flow paths and retained by minerals and/or stagnant water, depending on their sorption properties; this mechanism is critical for rocks to act as a barrier and ultimately provide safety for a geological repository. The sorbing tracers are retained by diffusion and sorption on mineral surfaces, whereas non-sorbing tracers can be retained only by diffusion into stagnant water of fractures. The retention and transport properties of a sparsely fractured rock will primarily depend on the specific surface area (SSA) of the fracture network which is determined by the heterogeneous structure and flow. The main challenge when characterising SSA on the field-scale is its dependence on the flow dynamics. We first define SSA as a physical quantity and clarify its importance for chemical transport. A methodology for dynamic characterisation of SSA in fracture networks is proposed that relies on three sets of data: i) Flow rate data as obtained by a flow logging procedure; ii) transmissivity data as obtained by pumping tests; iii) fracture network data as obtained from outcrop and geophysical observations. The proposed methodology utilises these data directly as well as indirectly through flow and particle tracking simulations in three-dimensional discrete fracture networks. The methodology is exemplified using specific data from the Swedish site Laxemar. The potential impact of uncertainties is of particular significance and is illustrated for radionuclide attenuation. Effects of internal fracture heterogeneity vs fracture network heterogeneity, and of rock deformation, on the statistical properties of SSA are briefly discussed.

Hydrogeology, ground-water flow, and tritium movement at low-level radioactive-waste disposal site near Sheffield, Illinois

USGS Publications Warehouse

Garklavs, George; Healy, R.W.

1986-01-01

Groundwater flow and tritium movement are described at and near a low-level radioactive waste disposal site near Sheffield, Illinois. Flow in the shallow aquifer is confined to three basins that ultimately drain into a stripmine lake. Most of the flow from the site is through a buried, pebbly sandfilled channel. Remaining flow is toward alluvium of an existing stream. Conceptual flow models for the two largest basins are used to improve definition of flow velocity and direction. Flow velocities range from about 25 to 2,500 ft/yr. Tritium was found in all three basins. The most extensive migration of tritium is coincident with buried channel. Tritium concentrations ranged from detection level to more than 300 nanocuries/L. (USGS)

Method to support Total Maximum Daily Load development using hydrologic alteration as a surrogate to address aquatic life impairment in New Jersey streams

USGS Publications Warehouse

Kennen, Jonathan G.; Riskin, Melissa L.; Reilly, Pamela A.; Colarullo, Susan J.

2013-01-01

More than 300 ambient monitoring sites in New Jersey have been identified by the New Jersey Department of Environmental Protection (NJDEP) in its integrated water-quality monitoring and assessment report (that is, the 305(b) Report on general water quality and 303(d) List of waters that do not support their designated uses) as being impaired with respect to aquatic life; however, no unambiguous stressors (for example, nutrients or bacteria) have been identified. Because of the indeterminate nature of the broad range of possible impairments, surrogate measures that more holistically encapsulate the full suite of potential environmental stressors need to be developed. Streamflow alteration resulting from anthropogenic changes in the landscape is one such surrogate. For example, increases in impervious surface cover (ISC) commonly cause increases in surface runoff, which can result in “flashy” hydrology and other changes in the stream corridor that are associated with streamflow alteration. The NJDEP has indicated that methodologies to support a hydrologically based Total Maximum Daily Load (hydro-TMDL) need to be developed in order to identify hydrologic targets that represent a minimal percent deviation from a baseline condition (“minimally altered”) as a surrogate measure to meet criteria in support of designated uses. The primary objective of this study was to develop an applicable hydro-TMDL approach to address aquatic-life impairments associated with hydrologic alteration for New Jersey streams. The U.S. Geological Survey, in cooperation with the NJDEP, identified 51 non- to moderately impaired gaged streamflow sites in the Raritan River Basin for evaluation. Quantile regression (QR) analysis was used to compare flow and precipitation records and identify baseline hydrographs at 37 of these sites. At sites without an appropriately long period of record (POR) or where a baseline hydrograph could not be identified with QR, a rainfall-runoff model was used to develop simulated baseline hydrographs. The hydro-TMDL approach provided an opportunity to evaluate proportional differences in flow attributes between observed and baseline hydrographs and to develop complementary flow-ecology response relations at a subset of Raritan River Basin sites where available flow and ecological information overlapped. The New Jersey Stream Classification Tool (NJSCT) was used to determine the stream class of all 51 study sites by using either an observed or a simulated baseline hydrograph. Two New Jersey stream classes (A and C) were evaluated to help characterize the unique hydrology of the Raritan River Basin. In general, class C streams (1.99–40.7 square miles) had smaller drainage areas than class A streams (0.7–785 square miles). Many of the non-impaired and moderately impaired class A and C streams in the Raritan River Basin were found to have significant hydrologic alteration as indicated by numerous flow values that fell outside the established 25th-to-75th- and the more conservative 40th-to-60th-percentile boundaries. However, percent deviations for the class C streams (defined as moderately stable streams with moderately high base-flow contributions) were, in general, much larger than those for the class A streams (defined as semiflashy streams characterized by moderately low base flow). The greater deviations for class C streams in the hydro-TMDL assessments likely resulted from comparisons that were based solely on simulated baseline hydrographs, which were developed without considering any anthropogenic influences in the basin. In contrast, comparisons for many of the class A streams were made by using an observed baseline, which already includes an implicit level of ISC and other human influences on the landscape. By using the hydro-TMDL approach, numerous flow deviations were identified that were indicative of streams that are highly regulated by reservoirs or dams, streams that are affected by increasing amounts of surface runoff resulting from ISC, and streams that are affected by water abstraction (that is, groundwater or surface-water withdrawals used for agricultural and human supply). Eight of the reservoir- and (or) dam-affected sites showed flow deviations that are indicative of flow-managed systems. For example, indices that account for the timing and magnitude of high and low flows were often found to fall outside the 25th-to-75th-percentile range. In general, at regulated class C streams, annual summer low flows are arriving later and tend to be lower, and high flows are arriving earlier with higher magnitudes of longer duration. At class A streams, high and low flows are arriving later with an overall increase in discharge with respect to the prereservoir baseline conditions. The drainage basins of eight of the study sites had large values of ISC (>10 percent), most likely as a result of expanding urban development. In general, the magnitude and frequency of high flows at class A and C sites with high ISC are increasing and were commonly found to fall outside the 25th-to-75th-percentile range. Additionally, magnitudes of low flows are becoming lower and, although the timing of high flows was highly variable, low-flow events appeared to be arriving earlier than would be expected under normal low-flow conditions. Three of the study sites appeared to be affected by hydrologic changes associated with water abstraction. At these sites, the timing of flows appeared to be altered. For example, low flows tended to arrive earlier and high flows arrived later at two of the three sites. Additionally, the magnitude and duration of low flows were commonly less than the 25th-percentile value and the duration of high flows appeared to increase. A reduced set of hydrologic and ecological variables was used to develop univariate and multivariate flow-ecology response models for the aquatic-invertebrate assemblage. Many hydrologic variables accounting for the duration, magnitude, frequency, and timing of flows were significantly correlated with ecological response. Multiple linear regression (MLR) models were developed to provide a more holistic evaluation of the combined effects of hydrologic alteration and to identify models with two or three hydrologic variables that account for a significant proportion of the variability in invertebrate-assemblage condition as represented by assemblage metric scores. MLR models, derived on the basis of hydrologic attributes, accounted for 35 to 75 percent of the variability in assemblage condition. The hydro-TMDL method developed herein for non- to moderately impaired Raritan River Basin streams utilizes a “surrogate” approach in place of the traditional “pollutant of concern” approach commonly used for TMDL development. Managers can use the results obtained by using the hydro-TMDL method to offset the effects of impervious-surface runoff and altered streamflow and to implement measures designed to achieve the necessary load reductions for the “pollutant of concern” (that is, percentage deviations of stream-class-specific flow-index values outside the established 25th-to-75th-percentile range). In this case, such deviations could represent all or a subset of the altered flow indices that prevent the stream from meeting designated aquatic-life criteria. This hydro-TMDL uses a reference, or attainment stream approach for developing the TMDL endpoint. That is, either observed or simulated baseline hydrographs were selected as appropriate reference conditions on the basis of results of QR analysis and watershed modeling procedures, respectively. For any stream in the Raritan River Basin evaluated as part of this study, the hydro-TMDL can be expressed as the greatest amount of deviation in flow a stream can exhibit without violating the stream’s designated aquatic-life criteria. Use of this surrogate approach is appropriate because flows that fall outside the established percentile ranges are ultimately a function of many anthropogenic modifications of the landscape, including the amount of stormwater runoff generated from impervious surfaces within a given basin, the presence of manmade structures designed to retain or divert water, the magnitude of ground- and surface-water abstraction, and the presence of water-supply processes implemented to support human needs. In addition, the stream-type-specific flow indices used as the basis for the hydro-TMDL approach are useful for representing the hydrologic conditions of class A and C streams/basins because they incorporate the full spectrum of flow conditions (very low to very high) that occur in the stream system over a long period of time, as well as those flow properties that change as a result of seasonal variation. Ultimately, an estimate of the maximum percentage flow reduction that could be allowed will be needed to address the aquatic-life impairments in many of the study streams in the Raritan River Basin and will be necessary for identifying appropriate target flow conditions for hydro-TMDL implementation. As described in this report, a target flow value equal to the 25th- or 75th-percentile flow rate could be selected as the point useful for setting specific hydrologic targets. This selection, however, is a management decision that could vary depending on the designated use of the stream or other regulatory factors (for example, water-supply protection, trout production, antidegradation policies, or special protection designations). In New Jersey streams where no unambiguous stressors can be identified, State monitoring agencies, such as the NJDEP, could choose to require the implementation of a flow-based TMDL that not only supports designated uses, but meets the regulatory requirements under the Clean Water Act, and represents a balance between water supply intended to meet human needs and the conservation of ecosystem integrity.

Median and Low-Flow Characteristics for Streams under Natural and Diverted Conditions, Northeast Maui, Hawaii

USGS Publications Warehouse

Gingerich, Stephen B.

2005-01-01

Flow-duration statistics under natural (undiverted) and diverted flow conditions were estimated for gaged and ungaged sites on 21 streams in northeast Maui, Hawaii. The estimates were made using the optimal combination of continuous-record gaging-station data, low-flow measurements, and values determined from regression equations developed as part of this study. Estimated 50- and 95-percent flow duration statistics for streams are presented and the analyses done to develop and evaluate the methods used in estimating the statistics are described. Estimated streamflow statistics are presented for sites where various amounts of streamflow data are available as well as for locations where no data are available. Daily mean flows were used to determine flow-duration statistics for continuous-record stream-gaging stations in the study area following U.S. Geological Survey established standard methods. Duration discharges of 50- and 95-percent were determined from total flow and base flow for each continuous-record station. The index-station method was used to adjust all of the streamflow records to a common, long-term period. The gaging station on West Wailuaiki Stream (16518000) was chosen as the index station because of its record length (1914-2003) and favorable geographic location. Adjustments based on the index-station method resulted in decreases to the 50-percent duration total flow, 50-percent duration base flow, 95-percent duration total flow, and 95-percent duration base flow computed on the basis of short-term records that averaged 7, 3, 4, and 1 percent, respectively. For the drainage basin of each continuous-record gaged site and selected ungaged sites, morphometric, geologic, soil, and rainfall characteristics were quantified using Geographic Information System techniques. Regression equations relating the non-diverted streamflow statistics to basin characteristics of the gaged basins were developed using ordinary-least-squares regression analyses. Rainfall rate, maximum basin elevation, and the elongation ratio of the basin were the basin characteristics used in the final regression equations for 50-percent duration total flow and base flow. Rainfall rate and maximum basin elevation were used in the final regression equations for the 95-percent duration total flow and base flow. The relative errors between observed and estimated flows ranged from 10 to 20 percent for the 50-percent duration total flow and base flow, and from 29 to 56 percent for the 95-percent duration total flow and base flow. The regression equations developed for this study were used to determine the 50-percent duration total flow, 50-percent duration base flow, 95-percent duration total flow, and 95-percent duration base flow at selected ungaged diverted and undiverted sites. Estimated streamflow, prediction intervals, and standard errors were determined for 48 ungaged sites in the study area and for three gaged sites west of the study area. Relative errors were determined for sites where measured values of 95-percent duration discharge of total flow were available. East of Keanae Valley, the 95-percent duration discharge equation generally underestimated flow, and within and west of Keanae Valley, the equation generally overestimated flow. Reduction in 50- and 95-percent flow-duration values in stream reaches affected by diversions throughout the study area average 58 to 60 percent.

Bias in ground-water data caused by well-bore flow in long-screen wells

USGS Publications Warehouse

Church, P.E.; Granato, G.E.

1996-01-01

The results of a field experiment comparing water-quality constituents, specific conductance, geophysical measurements, and well-bore hydraulics in two long-screen wells and adjacent vertical clusters of short-screen wells show bias in ground-water data caused by well-bore flow in long-screen wells. The well screen acts as a conduit for vertical flow because it connects zones of different head and transmissivity, even in a relatively homogeneous, unconfined, sand and gravel aquifer where such zones are almost indistinguishable. Flow in the well bore redistributes water and solutes in the aquifer adjacent to the well, increasing the risk of bias in water-quality samples, failure of plume detection, and cross-contamination of the aquifer. At one site, downward flow from a contaminated zone redistributes solutes over the entire length of the long-screen well. At another site, upward flow from an uncontaminated zone masks the presence of road salt plume. Borehole induction logs, conducted in a fully penetrating short-screen well, can provide a profile of solutes in the aquifer that is not attainable in long-screen wells. In this study, the induction-log profiles show close correlation with data from analyses of water-quality samples from the short-screen wells; however, both of these data sets differ markedly from the biased water-quality samples from the long-screen wells. Therefore, use of induction logs in fully cased wells for plume detection and accurate placement of short-screen wells is a viable alternative to use of long screen wells for water-quality sampling.

Using borehole flow data to characterize the hydraulics of flow paths in operating wellfields

USGS Publications Warehouse

Paillet, F.; Lundy, J.

2004-01-01

Understanding the flow paths in the vicinity of water well intakes is critical in the design of effective wellhead protection strategies for heterogeneous carbonate aquifers. High-resolution flow logs can be combined with geophysical logs and borehole-wall-image logs (acoustic televiewer) to identify the porous beds, solution openings, and fractures serving as conduits connecting the well bore to the aquifer. Qualitative methods of flow log analysis estimate the relative transmissivity of each water-producing zone, but do not indicate how those zones are connected to the far-field aquifer. Borehole flow modeling techniques can be used to provide quantitative estimates of both transmissivity and far-field hydraulic head in each producing zone. These data can be used to infer how the individual zones are connected with each other, and to the surrounding large-scale aquifer. Such information is useful in land-use planning and the design of well intakes to prevent entrainment of contaminants into water-supply systems. Specific examples of flow log applications in the identification of flow paths in operating wellfields are given for sites in Austin and Faribault, Minnesota. Copyright ASCE 2004.

Development of a Rapid Immunochromatographic Lateral Flow Device Capable of Differentiating Phytase Expressed from Recombinant Aspergillus niger phyA2 and Genetically Modified Corn.

PubMed

Zhou, Xiaojin; Hui, Elizabeth; Yu, Xiao-Lin; Lin, Zhen; Pu, Ling-Kui; Tu, Zhiguan; Zhang, Jun; Liu, Qi; Zheng, Jian; Zhang, Juan

2015-05-06

Phytase is a phosphohydrolase considered highly specific for the degradation of phytate to release bound phosphorus for animal consumption and aid in the reduction of environmental nutrient loading. New sources of phytase have been sought that are economically and efficiently productive including the construction of genetically modified (GM) phytase products designed to bypass the costs associated with feed processing. Four monoclonal antibodies (EH10a, FA7, AF9a, and CC1) raised against recombinant Aspergillus niger phyA2 were used to develop a highly specific and sensitive immunochromatographic lateral flow device for rapid detection of transgenic phytase, such as in GM corn. Antibodies sequentially paired and tested along lateral flow strips showed that the EH10a-FA7 antibody pair was able to detect the recombinant yeast-phytase at 5 ng/mL, whereas the AF9a-CC1 antibody pair to GM phytase corn was able to detect at 2 ng/mL. Concurrent to this development, evidence was revealed which suggests that antibody binding sites may be glycosylated.

The saturated zone at Yucca Mountain: An overview of the characterization and assessment of the saturated zone as a barrier to potential radionuclide migration

USGS Publications Warehouse

Eddebbarh, A.-A.; Zyvoloski, G.A.; Robinson, B.A.; Kwicklis, E.M.; Reimus, P.W.; Arnold, B.W.; Corbet, T.; Kuzio, S.P.; Faunt, C.

2003-01-01

The US Department of Energy is pursuing Yucca Mountain, Nevada, for the development of a geologic repository for the disposal of spent nuclear fuel and high-level radioactive waste, if the repository is able to meet applicable radiation protection standards established by the US Nuclear Regulatory Commission and the US Environmental Protection Agency (EPA). Effective performance of such a repository would rely on a number of natural and engineered barriers to isolate radioactive waste from the accessible environment. Groundwater beneath Yucca Mountain is the primary medium through which most radionuclides might move away from the potential repository. The saturated zone (SZ) system is expected to act as a natural barrier to this possible movement of radionuclides both by delaying their transport and by reducing their concentration before they reach the accessible environment. Information obtained from Yucca Mountain Site Characterization Project activities is used to estimate groundwater flow rates through the site-scale SZ flow and transport model area and to constrain general conceptual models of groundwater flow in the site-scale area. The site-scale conceptual model is a synthesis of what is known about flow and transport processes at the scale required for total system performance assessment of the site. This knowledge builds on and is consistent with knowledge that has accumulated at the regional scale but is more detailed because more data are available at the site-scale level. The mathematical basis of the site-scale model and the associated numerical approaches are designed to assist in quantifying the uncertainty in the permeability of rocks in the geologic framework model and to represent accurately the flow and transport processes included in the site-scale conceptual model. Confidence in the results of the mathematical model was obtained by comparing calculated to observed hydraulic heads, estimated to measured permeabilities, and lateral flow rates calculated by the site-scale model to those calculated by the regional-scale flow model. In addition, it was confirmed that the flow paths leaving the region of the potential repository are consistent with those inferred from gradients of measured head and those independently inferred from water-chemistry data. The general approach of the site-scale SZ flow and transport model analysis is to calculate unit breakthrough curves for radionuclides at the interface between the SZ and the biosphere using the three-dimensional site-scale SZ flow and transport model. Uncertainties are explicitly incorporated into the site-scale SZ flow and transport abstractions through key parameters and conceptual models. ?? 2002 Elsevier Science B.V. All rights reserved.

PFReports: A program for systematic checking of annual peaks in NWISWeb

USGS Publications Warehouse

Ryberg, Karen R.

2008-01-01

The accuracy, characterization, and completeness of the U.S. Geological Survey (USGS) peak-flow data drive the determination of flood-frequency estimates that are used daily to design water and transportation infrastructure, delineate flood-plain boundaries, and regulate development and utilization of lands throughout the Nation and are essential to understanding the implications of climate change on flooding. Indeed, this high-profile database reflects and highlights the quality of USGS water-data collection programs. Its extension and improvement are essential to efforts to strengthen USGS networks and science leadership and is worthy of the attention of Water Science Center (WSC) hydrographers. This document describes a computer program, PFReports, and its output that facilitates efficient and robust review and correction of data in the USGS Peak Flow File (PFF) hosted as part of NWISWeb (the USGS public Web interface to much of the data stored and managed within the National Water Information System or NWIS). Checks embedded in the program are recommended as part of a more comprehensive assessment of peak flow data that will eventually include examination of possible regional changes, seasonal changes, and decadal variations in magnitude, timing, and frequency. Just as important as the comprehensive assessment, cleaning up the database will increase the likelihood of improved WSC regional flood-frequency equations. As an example of the value of cleaning up the PFF, data for 26,921 sites in the PFF were obtained. Of those sites, 17,542 sites had peak streamflow values and daily values. For the 17,542 sites, 1,097 peaks were identified that were less than the daily value for the day on which the peak occurred. Of the 26,921 sites, 11,643 had peak streamflow values, concurrent daily values, and at least 10 peaks. At the 11,643 sites, 2,205 peaks were identified as potential outliers in a regression of peak streamflows on daily values. Previous efforts to identify problems with the PFF were time consuming, laborious, and often ineffective. This new suite of checks represents an effort to automate identification of specific problems without plotting or printing large amounts of data that may not have problems. In addition, the results of the checks of the peak flow files are delivered through the World Wide Web with links to individual reports so that WSCs can focus on specific problems in an organized and standardized fashion. Over the years, technical reviews, regional-flood studies, and user inquiries have identified many minor and some major problems in the PFF. However, the cumbersome nature of the PFF editor and a lack of analytical tools have hampered efforts at quality assurance/quality control (QA/QC) and subsequently to make needed revisions to the database. This document is organized to provide information regarding PFReports, especially those tests involving regression and to provide an overview of the review procedures for utilizing the output. It also may be used as a reference for the data qualification codes and abbreviations for the tests. Results of the checks for all peak flow files (March 2008) are available at http://nd.water.usgs.gov/internal/pfreports/.

Refinement of Fread s Method for improved tracking of stream discharges during unsteady flows

DOE PAGES

Lee, Kyutae; Muste, Marian

2017-02-07

There are a plethora of analytical approaches to account for the effect of unsteady flow (a.k.a. hysteretic behavior) on the conventionally-built steady rating curves (RCs) used to continuously estimate discharges in open channel flow. One of the most complete correction methods is Fread s method (Fread, 1975) which is based on fully dynamic one-dimensional wave equation. Proposed herein is a modified Fread s method which is adjusted to account for the actual geometry of the cross section. This method improves the accuracy associated with the estimation of conveyance factor and energy slope, so it is particularly useful for small tomore » mid-size streams/rivers where the original method s assumption does not properly hold. The modified Fread s method is tested for the sites in Clear Creek (Iowa, USA) and Ebro River (Spain) to illustrate the significance of its improvement in discharge estimation. While the degree of improvement is apparent for the conveyance factor because the hydraulic depth is replaced by hydraulic radius, that for the energy slope term specifically depends on the site and event conditions.« less

Refinement of Fread s Method for improved tracking of stream discharges during unsteady flows

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Kyutae; Muste, Marian

There are a plethora of analytical approaches to account for the effect of unsteady flow (a.k.a. hysteretic behavior) on the conventionally-built steady rating curves (RCs) used to continuously estimate discharges in open channel flow. One of the most complete correction methods is Fread s method (Fread, 1975) which is based on fully dynamic one-dimensional wave equation. Proposed herein is a modified Fread s method which is adjusted to account for the actual geometry of the cross section. This method improves the accuracy associated with the estimation of conveyance factor and energy slope, so it is particularly useful for small tomore » mid-size streams/rivers where the original method s assumption does not properly hold. The modified Fread s method is tested for the sites in Clear Creek (Iowa, USA) and Ebro River (Spain) to illustrate the significance of its improvement in discharge estimation. While the degree of improvement is apparent for the conveyance factor because the hydraulic depth is replaced by hydraulic radius, that for the energy slope term specifically depends on the site and event conditions.« less

Productivity benefits of warming at regional scale could be offset by detrimental impacts on site level hydrology.

PubMed

Zeng, Qing; Zhang, Yamian; Wen, Li; Li, Zhaxijie; Duo, Hairui; Lei, Guangchun

2017-11-09

Climate change affects the distribution and persistence of wildlife. Broad scale studies have demonstrated that climate change shifts the geographic ranges and phenology of species. These findings are influential for making high level strategies but not practical enough to guide site specific management. In this study, we explored the environment factors affecting the population of Bar-headed Goose in the key breeding site of Qinghai using generalized additive mixed model (GAMM). Our results showed that 1) there were significant increasing trends in climate variables and river flows to the Qinghai Lake; 2) NDVI in the sites decreased significantly despite the regional positive trend induced by the warmer and wetter climate; 3) NDVI at site scale was negatively correlated to lake water level; and 4) the abundance of Bar-headed Goose decreased significantly at all sites. While the abundance was positively related to NDVI at breeding sites, the GAMM revealed an opposite relationship at foraging areas. Our findings demonstrated the multi-facet effects of climate change on population dynamics; and the effect at global/regional scale could be complicated by site level factors.

Washington Phase II Fish Diversion Screen Evaluations in the Yakima and Touchet River Basins, 2005-2006 Annual Reports.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chamness, Mickie; Abernethy, C.; Tunnicliffe, Cherylyn

2006-02-01

In 2005, Pacific Northwest National Laboratory (PNNL) researchers evaluated 25 Phase II fish screen sites in the Yakima and Touchet river basins. Pacific Northwest National Laboratory performs these evaluations for Bonneville Power Administration (BPA) to determine whether the fish screening devices meet National Marine Fisheries Service (NMFS) criteria to promote safe and timely fish passage. Evaluations consist of measuring velocities in front of the screens, using an underwater camera to look at the condition and environment in front of the screens, and noting the general condition and operation of the sites. Results of the evaluations in 2005 include the following:more » (1) Most approach velocities met the NMFS criterion of less than or equal to 0.4 fps. Less than 13% of all approach measurements exceeded the criterion, and these occurred at 10 of the sites. Flat-plate screens had more problems than drum screens with high approach velocities. (2) Bypass velocities generally were greater than sweep velocities, but sweep velocities often did not increase toward the bypass. The latter condition could slow migration of fish through the facility. (3) Screen and seal materials generally were in good condition. (4) Automated cleaning brushes generally functioned properly; chains and other moving parts were typically well-greased and operative. (5) Washington Department of Fish and Wildlife (WDFW) and U.S. Bureau of Reclamation (USBR) generally operate and maintain fish screen facilities in a way that provides safe passage for juvenile fish. (6) In some instances, irrigators responsible for specific maintenance at their sites (e.g., debris removal) are not performing their tasks in a way that provides optimum operation of the fish screen facility. New ways need to be found to encourage them to maintain their facilities properly. (7) We recommend placing datasheets providing up-to-date operating criteria and design flows in each sites logbox. The datasheet should include bypass design flows and a table showing depths of water over the weir and corresponding bypass flow. This information is available at some of the sites but may be outdated. These data are used to determine if the site is running within design criteria. (8) Modifying use of debris control plates at Gleed helped minimize the extreme fluctuations in flow, but approach velocities are still too high. Other ways to reduce the approach velocities need to be tried, possibly including redesign of the site. (9) Alternatives to a screen site at Taylor should be considered. A lot of effort was spent trying to increase water to the site, but it still was unable to operate within NMFS criteria for most of the year and may be a hazard to juvenile salmonids. We conclude that the conditions at most of the Phase II fish screen facilities we evaluated in 2005 would be expected to provide safe passage for juvenile fish. For those sites where conditions are not always optimum for safe fish passage, PNNL researchers will try to coordinate with the WDFW and USBR in 2006 to find solutions to the problems. Some of those problems are consistently high approach velocities at specific sites, including Congdon, Naches-Selah, Union Gap, and Yakima-Tieton. We would like to be able to monitor changes in velocities as soon as operations and maintenance personnel adjust the louvers or porosity boards at these sites. This will give them immediate feedback on the results of their modifications and allow additional adjustments as necessary until the conditions meet NMFS criteria. Pacific Northwest National Laboratory has performed evaluations at many of these sites over the past 8 years, providing information WDFW and USBR personnel can use to perform their operations and maintenance more effectively. Consequently, overall effectiveness of the screens facilities has improved over time.« less

Delineation of fractures, foliation, and groundwater of the bedrock at a geothermal feasibility site on Roosevelt Island, New York County, New York

USGS Publications Warehouse

Stumm, Frederick; Chu, Anthony; Como, Michael D.; Noll, Michael L.; Joesten, Peter K.

2015-01-01

Advanced borehole-geophysical methods were used to investigate the hydrogeology of the crystalline bedrock in three boreholes on Roosevelt Island, New York County, New York. Cornell University was evaluating the feasibility of using geothermal energy for a future campus at the site. The borehole-logging techniques were used to delineate bedrock fractures, foliation, and groundwater-flow zones of the Fordham Gneiss in test boreholes at the site. Three fracture populations dominated by small (0.04 in or less) fractures were delineated in the three boreholes. A sub-horizontal population with low to moderate dipping fractures, a northeast dipping population with moderate to high angle fractures, and a small northwest dipping high angle fracture population. One large southwest dipping transmissive fracture underlies the entire study area with a mean dip azimuth of 235º southwest and a dip angle of 31º (N325ºW 31ºSW). The mean foliation dip azimuth was 296º northwest with a mean dip angle of 73º (N26ºE 73ºNW). Groundwater appears to flow through a network of fractures dominated by a large fracture underlying the site that is affected by tidal variations from the nearby East River. The total number of fractures penetrated by each borehole was 95, 63, and 68, with fracture indices of 0.26, 0.20, and 0.20 in GT-1 (NY292), GT-2 (NY293), and GT-3 (NY294), respectively. Aquifer test data indicate the specific capacity of boreholes GT-1 (NY292), GT-2 (NY293), and GT-3 (NY294) was 1.9, 1.5, and 3.7 gal/min/ft, respectively. The large contribution of flow from the leaking casing in borehole GT-3 (NY294) caused the doubling in specific capacity compared to boreholes GT-1 (NY292) and GT-2 (NY293). The transmissivities of the large fracture intersected by the three boreholes tested (GT-1, GT-2, and GT-3), calculated from aquifer-test analyses of time-drawdown data and flowmeter differencing, were 133, 124, and 65 feet squared per day (ft2/d), respectively. Gringarten analysis indicated the large fracture intersects a low transmissivity boundary or distant fracture network with an average transmissivity of 69 ft2/d, this distant hydraulic boundary averages about 200 ft away from boreholes GT-1 and GT-2. Field measurements of specific conductance of the three boreholes under ambient conditions at the site indicate an increase in conductivity toward the southwest part of the site. Specific conductance was 5, 6, and 23 millisiemens per centimeter (mS/cm) in boreholes GT-2, GT-3, and GT-1, respectively. Three borehole radar reflection logs collected at each of the boreholes indicated increased penetration with depth and the large fracture intersecting all three boreholes was imaged as far as 80 ft from the boreholes. A borehole radar attenuation tomogram from GT-1 to GT-2 indicated the large fracture intersected by the boreholes extends between the boreholes with a low angle southwest dip.

Estimated flow-duration curves for selected ungaged sites in Kansas

USGS Publications Warehouse

Studley, S.E.

2001-01-01

Flow-duration curves for 1968-98 were estimated for 32 ungaged sites in the Missouri, Smoky Hill-Saline, Solomon, Marais des Cygnes, Walnut, Verdigris, and Neosho River Basins in Kansas. Also included from a previous report are estimated flow-duration curves for 16 ungaged sites in the Cimarron and lower Arkansas River Basins in Kansas. The method of estimation used six unique factors of flow duration: (1) mean streamflow and percentage duration of mean streamflow, (2) ratio of 1-percent-duration streamflow to mean streamflow, (3) ratio of 0.1-percent-duration streamflow to 1-percent-duration streamflow, (4) ratio of 50-percent-duration streamflow to mean streamflow, (5) percentage duration of appreciable streamflow (0.10 cubic foot per second), and (6) average slope of the flow-duration curve. These factors were previously developed from a regionalized study of flow-duration curves using streamflow data for 1921-76 from streamflow-gaging stations with drainage areas of 100 to 3,000 square miles. The method was tested on a currently (2001) measured, continuous-record streamflow-gaging station on Salt Creek near Lyndon, Kansas, with a drainage area of 111 square miles and was found to adequately estimate the computed flow-duration curve for the station. The method also was tested on a currently (2001) measured, continuous-record, streamflow-gaging station on Soldier Creek near Circleville, Kansas, with a drainage area of 49.3 square miles. The results of the test on Soldier Creek near Circleville indicated that the method could adequately estimate flow-duration curves for sites with drainage areas of less than 100 square miles. The low-flow parts of the estimated flow-duration curves were verified or revised using 137 base-flow discharge measurements made during 1999-2000 at the 32 ungaged sites that were correlated with base-flow measurements and flow-duration analyses performed at nearby, long-term, continuous-record, streamflow-gaging stations (index stations). The method did not adequately estimate the flow-duration curves for two sites in the western one-third of the State because of substantial changes in farming practices (terracing and intensive ground-water withdrawal) that were not accounted for in the two previous studies (Furness, 1959; Jordan, 1983). For these two sites, there was enough historic, continuous-streamflow record available to perform record-extension techniques correlated to their respective index stations for the development of the estimated flow-duration curves. The estimated flow-duration curves at the ungaged sites can be used for projecting future flow frequencies for assessment of total maximum daily loads (TMDLs) or other water-quality constituents, water-availability studies, and for basin-characteristic studies.

Estimation of inlet flow rates for image-based aneurysm CFD models: where and how to begin?

PubMed

Valen-Sendstad, Kristian; Piccinelli, Marina; KrishnankuttyRema, Resmi; Steinman, David A

2015-06-01

Patient-specific flow rates are rarely available for image-based computational fluid dynamics models. Instead, flow rates are often assumed to scale according to the diameters of the arteries of interest. Our goal was to determine how choice of inlet location and scaling law affect such model-based estimation of inflow rates. We focused on 37 internal carotid artery (ICA) aneurysm cases from the Aneurisk cohort. An average ICA flow rate of 245 mL min(-1) was assumed from the literature, and then rescaled for each case according to its inlet diameter squared (assuming a fixed velocity) or cubed (assuming a fixed wall shear stress). Scaling was based on diameters measured at various consistent anatomical locations along the models. Choice of location introduced a modest 17% average uncertainty in model-based flow rate, but within individual cases estimated flow rates could vary by >100 mL min(-1). A square law was found to be more consistent with physiological flow rates than a cube law. Although impact of parent artery truncation on downstream flow patterns is well studied, our study highlights a more insidious and potentially equal impact of truncation site and scaling law on the uncertainty of assumed inlet flow rates and thus, potentially, downstream flow patterns.

Are patterns of fine-scale spatial genetic structure consistent between sites within tropical tree species?

PubMed Central

Smith, James R.; Ghazoul, Jaboury; Burslem, David F. R. P.; Itoh, Akira; Khoo, Eyen; Lee, Soon Leong; Maycock, Colin R.; Nanami, Satoshi; Ng, Kevin Kit Siong; Kettle, Chris J.

2018-01-01

Documenting the scale and intensity of fine-scale spatial genetic structure (FSGS), and the processes that shape it, is relevant to the sustainable management of genetic resources in timber tree species, particularly where logging or fragmentation might disrupt gene flow. In this study we assessed patterns of FSGS in three species of Dipterocarpaceae (Parashorea tomentella, Shorea leprosula and Shorea parvifolia) across four different tropical rain forests in Malaysia using nuclear microsatellite markers. Topographic heterogeneity varied across the sites. We hypothesised that forests with high topographic heterogeneity would display increased FSGS among the adult populations driven by habitat associations. This hypothesis was not supported for S. leprosula and S. parvifolia which displayed little variation in the intensity and scale of FSGS between sites despite substantial variation in topographic heterogeneity. Conversely, the intensity of FSGS for P. tomentella was greater at a more topographically heterogeneous than a homogeneous site, and a significant difference in the overall pattern of FSGS was detected between sites for this species. These results suggest that local patterns of FSGS may in some species be shaped by habitat heterogeneity in addition to limited gene flow by pollen and seed dispersal. Site factors can therefore contribute to the development of FSGS. Confirming consistency in species’ FSGS amongst sites is an important step in managing timber tree genetic diversity as it provides confidence that species specific management recommendations based on species reproductive traits can be applied across a species’ range. Forest managers should take into account the interaction between reproductive traits and site characteristics, its consequences for maintaining forest genetic resources and how this might influence natural regeneration across species if management is to be sustainable. PMID:29547644

Assessment of the Unintentional Reuse of Municipal Wastewater

NASA Astrophysics Data System (ADS)

Okasaki, S.; Fono, L.; Sedlak, D. L.; Dracup, J. A.

2002-12-01

Many surface waters that receive wastewater effluent also serve as source waters for drinking water treatment plants. Recent research has shown that a number of previously undiscovered wastewater-derived contaminants are present in these surface waters, including pharmaceuticals and human hormones, several of which are suspected carcinogens or endocrine disrupters and are, as of yet, unregulated through drinking water standards. This research has been designed to determine the extent of contamination of specific wastewater-derived contaminants in surface water bodies that both receive wastewater effluent and serve as a source of drinking water to a sizeable population. We are testing the hypothesis that surface water supplies during low flow are potentially of worse quality than carefully monitored reclaimed water. The first phase of our research involves: (1) the selection of sites for study; (2) a hydrologic analysis of the selected sites to determine average flow of the source water during median- and low-flow conditions; and (3) the development and testing of chemical analyses, including both conservative and reactive tracers that have been studied in microcosms and wetlands for attenuation rates. The second phase involves the development and use of the hydrologic model QUAL2E to simulate each of the selected watersheds in order to estimate potential stream water quality impairments at the drinking water intake at each site. The results of the model are verified with field sampling at designated locations at each site. We expect to identify several critical river basins where surface water at the drinking water intake contains sufficient wastewater-derived contaminants to warrant concern. If wastewater-derived contaminants are detected, we will estimate the average annual exposure of consumers of this water. We will compare these expected and actual concentrations with typical constituent concentrations found in wastewater that has undergone advanced treatment for reclamation. We may demonstrate that the surface water supplies during low flow are actually of worse quality than carefully monitored reclaimed water.

Rotating Rod Renewable Microcolumns for Automated, Solid-Phase DNA Hybridization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bruckner-Lea, Cynthia J.; Stottlemyre, Mark R.; Holman, David A.

1999-12-01

The development of a new temperature-controlled renewable microcolumn flow cell for solid-phase nucleic acid analysis in a sequential injection system is described. The flow cell includes a stepper motor-driven rotating rod with the working end cut to a 45 degree angle. In one position, the end of the rod prevents passage of microbeads while allowing fluid flow; rotation of the rod by 180 degrees release the beads. This system was used to rapidly test many hybridization and elution protocols to examine the temperature and solution conditions required for sequence specific nucleic acid hybridization. Target nucleic acids labeled with a near-infraredmore » fluorescent dye were detected immediately post-column using a flow-through fluorescence detector, with a detection limit of 40 pM dye concentration at a flow rate of 5 mu l/s. Temperature control of the column and the presence of Triton X-100 surfactant were critical for specific hybridization. Perfusion of the column with complementary oligonucleotide (200 mu l, 10nM) resulted in hybridization with 8% of the DNA binding sites on the microbeads with a solution residence time of less than a second and a total sample perfusion time of 40 seconds. The use of the renewable column system for detection of an unlabeled PCR product in a sandwich assay was also demonstrated.« less

Two-generation analysis of pollen flow across a landscape. V. A stepwise approach for extracting factors contributing to pollen structure.

Treesearch

R. J. Dyer; R. D. Westfall; V. L. Sork; P. E. Smouse

2004-01-01

Patterns of pollen dispersal are central to both the ecology and evolution of plant populations. However, the mechanisms controlling either the dispersal process itself or our estimation of that process may be influenced by site-specific factors such as local forest structure and nonuniform adult genetic structure. Here, we present an extension of the AMOVA model...

In Situ Chemical Oxidation for Groundwater Remediation: Site-Specific Engineering & Technology Application

DTIC Science & Technology

2010-10-01

PERFORMING ORGANIZATION NAME(S) AND ADDRESS(ES) Colorado School of Mines,1500 Illinois St, Golden ,CO,80401 8. PERFORMING ORGANIZATION REPORT NUMBER 9...Protocol page 13 Overall ISCO Protocol Flow Diagram addition, laboratory studies may be used to select optimal chemistry parameters to maximize oxidant...Design Process 5. Because of the complexity of these oxidants’ chemistry and implementation, with much of the knowledge base residing with those

Anisotropic energy flow and allosteric ligand binding in albumin

NASA Astrophysics Data System (ADS)

Li, Guifeng; Magana, Donny; Dyer, R. Brian

2014-01-01

Allosteric interactions in proteins generally involve propagation of local structural changes through the protein to a remote site. Anisotropic energy transport is thought to couple the remote sites, but the nature of this process is poorly understood. Here, we report the relationship between energy flow through the structure of bovine serum albumin and allosteric interactions between remote ligand binding sites of the protein. Ultrafast infrared spectroscopy is used to probe the flow of energy through the protein backbone following excitation of a heater dye, a metalloporphyrin or malachite green, bound to different binding sites in the protein. We observe ballistic and anisotropic energy flow through the protein structure following input of thermal energy into the flexible ligand binding sites, without local heating of the rigid helix bundles that connect these sites. This efficient energy transport mechanism enables the allosteric propagation of binding energy through the connecting helix structures.

Anisotropic energy flow and allosteric ligand binding in albumin.

PubMed

Li, Guifeng; Magana, Donny; Dyer, R Brian

2014-01-01

Allosteric interactions in proteins generally involve propagation of local structural changes through the protein to a remote site. Anisotropic energy transport is thought to couple the remote sites, but the nature of this process is poorly understood. Here, we report the relationship between energy flow through the structure of bovine serum albumin and allosteric interactions between remote ligand binding sites of the protein. Ultrafast infrared spectroscopy is used to probe the flow of energy through the protein backbone following excitation of a heater dye, a metalloporphyrin or malachite green, bound to different binding sites in the protein. We observe ballistic and anisotropic energy flow through the protein structure following input of thermal energy into the flexible ligand binding sites, without local heating of the rigid helix bundles that connect these sites. This efficient energy transport mechanism enables the allosteric propagation of binding energy through the connecting helix structures.

Anisotropic energy flow and allosteric ligand binding in albumin

PubMed Central

Li, Guifeng; Magana, Donny; Dyer, R. Brian

2014-01-01

Allosteric interactions in proteins generally involve propagation of local structural changes through the protein to a remote site. Anisotropic energy transport is thought to couple the remote sites, but the nature of this process is poorly understood. Here, we report the relationship between energy flow through the structure of bovine serum albumin and allosteric interactions between remote ligand binding sites of the protein. Ultrafast infrared spectroscopy is used to probe the flow of energy through the protein backbone following excitation of a heater dye, a metalloporphyrin or malachite green, bound to different binding sites in the protein. We observe ballistic and anisotropic energy flow through the protein structure following input of thermal energy into the flexible ligand binding sites, without local heating of the rigid helix bundles that connect these sites. This efficient energy transport mechanism enables the allosteric propagation of binding energy through the connecting helix structures. PMID:24445265

Water-quality variations in Antelope Creek and Deadmans Run, Lincoln, Nebraska

USGS Publications Warehouse

Pettijohn, R.A.; Engberg, R.A.

1985-01-01

Eleven sets of samples from five sites on Antelope Creek and Dead Man 's Run in Lincoln, Nebraska, were collected from December 1982 through June 1983 to study water-quality variations. Specific-conductance values generally were similar for Antelope Creek at 52nd Street and 27th Street, but during a low-flow survey of December 1 they increased from 974 to 8,700 microsiemens per centimeter at 25 C from 27th Street to Court Street. Seepage of saline water from underlying bedrock to the stream occurs in this reach. Specific-conductance values were less variable for Dead Man 's Run, increasing an average of only 47 percent from 66th Street to U.S. Highway 6. Specific-conductance values were less at high flows in Antelope Creek, except in samples collected on January 6, 1983, which contained runoff from salted streets. Sodium and chloride concentrations in these samples were from 5 to 10 times greater than those measured in any other samples. Stray-current corrosion occurs when current flows between dissimilar metals. Zinc-coated wire of channel-stabilization structures (gabions) may be an anode and material within the stream banks may be a cathode. Dissolution of the zinc coating by this type of corrosion may be a cause for gabion deterioration in both streams. (USGS)

Shifts of Gamma Phase across Primary Visual Cortical Sites Reflect Dynamic Stimulus-Modulated Information Transfer.

PubMed

Besserve, Michel; Lowe, Scott C; Logothetis, Nikos K; Schölkopf, Bernhard; Panzeri, Stefano

2015-01-01

Distributed neural processing likely entails the capability of networks to reconfigure dynamically the directionality and strength of their functional connections. Yet, the neural mechanisms that may allow such dynamic routing of the information flow are not yet fully understood. We investigated the role of gamma band (50-80 Hz) oscillations in transient modulations of communication among neural populations by using measures of direction-specific causal information transfer. We found that the local phase of gamma-band rhythmic activity exerted a stimulus-modulated and spatially-asymmetric directed effect on the firing rate of spatially separated populations within the primary visual cortex. The relationships between gamma phases at different sites (phase shifts) could be described as a stimulus-modulated gamma-band wave propagating along the spatial directions with the largest information transfer. We observed transient stimulus-related changes in the spatial configuration of phases (compatible with changes in direction of gamma wave propagation) accompanied by a relative increase of the amount of information flowing along the instantaneous direction of the gamma wave. These effects were specific to the gamma-band and suggest that the time-varying relationships between gamma phases at different locations mark, and possibly causally mediate, the dynamic reconfiguration of functional connections.

Shifts of Gamma Phase across Primary Visual Cortical Sites Reflect Dynamic Stimulus-Modulated Information Transfer

PubMed Central

Besserve, Michel; Lowe, Scott C.; Logothetis, Nikos K.; Schölkopf, Bernhard; Panzeri, Stefano

2015-01-01

Distributed neural processing likely entails the capability of networks to reconfigure dynamically the directionality and strength of their functional connections. Yet, the neural mechanisms that may allow such dynamic routing of the information flow are not yet fully understood. We investigated the role of gamma band (50–80 Hz) oscillations in transient modulations of communication among neural populations by using measures of direction-specific causal information transfer. We found that the local phase of gamma-band rhythmic activity exerted a stimulus-modulated and spatially-asymmetric directed effect on the firing rate of spatially separated populations within the primary visual cortex. The relationships between gamma phases at different sites (phase shifts) could be described as a stimulus-modulated gamma-band wave propagating along the spatial directions with the largest information transfer. We observed transient stimulus-related changes in the spatial configuration of phases (compatible with changes in direction of gamma wave propagation) accompanied by a relative increase of the amount of information flowing along the instantaneous direction of the gamma wave. These effects were specific to the gamma-band and suggest that the time-varying relationships between gamma phases at different locations mark, and possibly causally mediate, the dynamic reconfiguration of functional connections. PMID:26394205

Techniques for estimating the magnitude and frequency of floods in rural basins of South Carolina, 1999

USGS Publications Warehouse

Feaster, Toby D.; Tasker, Gary D.

2002-01-01

Data from 167 streamflow-gaging stations in or near South Carolina with 10 or more years of record through September 30, 1999, were used to develop two methods for estimating the magnitude and frequency of floods in South Carolina for rural ungaged basins that are not significantly affected by regulation. Flood frequency estimates for 54 gaged sites in South Carolina were computed by fitting the water-year peak flows for each site to a log-Pearson Type III distribution. As part of the computation of flood-frequency estimates for gaged sites, new values for generalized skew coefficients were developed. Flood-frequency analyses also were made for gaging stations that drain basins from more than one physiographic province. The U.S. Geological Survey, in cooperation with the South Carolina Department of Transportation, updated these data from previous flood-frequency reports to aid officials who are active in floodplain management as well as those who design bridges, culverts, and levees, or other structures near streams where flooding is likely to occur. Regional regression analysis, using generalized least squares regression, was used to develop a set of predictive equations that can be used to estimate the 2-, 5-, 10-, 25-, 50-, 100-, 200-, and 500-year recurrence-interval flows for rural ungaged basins in the Blue Ridge, Piedmont, upper Coastal Plain, and lower Coastal Plain physiographic provinces of South Carolina. The predictive equations are all functions of drainage area. Average errors of prediction for these regression equations ranged from -16 to 19 percent for the 2-year recurrence-interval flow in the upper Coastal Plain to -34 to 52 percent for the 500-year recurrence interval flow in the lower Coastal Plain. A region-of-influence method also was developed that interactively estimates recurrence- interval flows for rural ungaged basins in the Blue Ridge of South Carolina. The region-of-influence method uses regression techniques to develop a unique relation between flow and basin characteristics for an individual watershed. This, then, can be used to estimate flows at ungaged sites. Because the computations required for this method are somewhat complex, a computer application was developed that performs the computations and compares the predictive errors for this method. The computer application includes the option of using the region-of-influence method, or the generalized least squares regression equations from this report to compute estimated flows and errors of prediction specific to each ungaged site. From a comparison of predictive errors using the region-of-influence method with those computed using the regional regression method, the region-of-influence method performed systematically better only in the Blue Ridge and is, therefore, not recommended for use in the other physiographic provinces. Peak-flow data for the South Carolina stations used in the regionalization study are provided in appendix A, which contains gaging station information, log-Pearson Type III statistics, information on stage-flow relations, and water-year peak stages and flows. For informational purposes, water-year peak-flow data for stations on regulated streams in South Carolina also are provided in appendix D. Other information pertaining to the regulated streams is provided in the text of the report.

Optimization of the Implementation of Managed Aquifer Recharge - Effects of Aquifer Heterogeneity

NASA Astrophysics Data System (ADS)

Maliva, Robert; Missimer, Thomas; Kneppers, Angeline

2010-05-01

Managed aquifer recharge (MAR) has become a key component of integrated water resources management, especially in water scarce regions. MAR can serve the dual role of increasing the supply of available water and improving the quality of recharged water through natural attenuation processes. The performance of MAR systems is highly dependent upon site-specific hydrogeological conditions. Aquifer heterogeneity, such as the presence of high-permeability preferential flow zones and dual or even the so-called triple-porosity conditions, has been responsible for the under performance or failure of some MAR systems. Aquifer heterogeneity can result in much more rapid and unpredictable movement and mixing of recharged water and the bypassing of natural attenuation processes. A critical element of MAR projects is a detailed aquifer characterization and the development of groundwater flow and solute transport models at the appropriate spatial and temporal scales that accurately simulate local heterogeneous flow systems. Geochemical modeling based on high-quality, site-specific mineralogical and water chemistry data can also be used to predict the potential for adverse water-rock interactions such as the leaching of arsenic and trace metals into recharged water. Hydrogeological conditions that could lead to poor system performance should be identified early in the project development before the investment is made to construct a full-scale system. Hydrogeological conditions that have lead to poor MAR system performance are typically identifiable at the exploratory well stage of projects. Early detection of adverse hydrogeological conditions provides an opportunity to either abandon a likely under-performing project, select an alternative site with more favorable conditions, or modify the system design to be more compatible with local hydrogeology. Advanced borehole geophysical techniques and workflow software can allow for enhanced aquifer characterization and thus allow for more successful MAR implementation as a tool for improved water resources management.

Nitrate in the Mississippi River and its tributaries, 1980 to 2008: Are we making progress?

USGS Publications Warehouse

Sprague, Lori A.; Hirsch, Robert M.; Aulenbach, Brent T.

2011-01-01

Changes in nitrate concentration and flux between 1980 and 2008 at eight sites in the Mississippi River basin were determined using a new statistical method that accommodates evolving nitrate behavior over time and produces flow-normalized estimates of nitrate concentration and flux that are independent of random variations in streamflow. The results show that little consistent progress has been made in reducing riverine nitrate since 1980, and that flow-normalized concentration and flux are increasing in some areas. Flow-normalized nitrate concentration and flux increased between 9 and 76% at four sites on the Mississippi River and a tributary site on the Missouri River, but changed very little at tributary sites on the Ohio, Iowa, and Illinois Rivers. Increases in flow-normalized concentration and flux at the Mississippi River at Clinton and Missouri River at Hermann were more than three times larger than at any other site. The increases at these two sites contributed much of the 9% increase in flow-normalized nitrate flux leaving the Mississippi River basin. At most sites, concentrations increased more at low and moderate streamflows than at high streamflows, suggesting that increasing groundwater concentrations are having an effect on river concentrations.

Hydrologic evaluation methodology for estimating water movement through the unsaturated zone at commercial low-level radioactive waste disposal site

USGS Publications Warehouse

Meyer, P.D.; Rockhold, M.L.; Nichols, W.E.; Gee, G.W.

1996-01-01

This report identifies key technical issues related to hydrologic assessment of water flow in the unsaturated zone at low-level radioactive waste (LLW) disposal facilities. In addition, a methodology for incorporating these issues in the performance assessment of proposed LLW disposal facilities is identified and evaluated. The issues discussed fall into four areas:Estimating the water balance at a site (i.e., infiltration, runoff, water storage, evapotranspiration, and recharge);Analyzing the hydrologic performance of engineered components of a facility;Evaluating the application of models to the prediction of facility performance; andEstimating the uncertainty in predicted facility performance.An estimate of recharge at a LLW site is important since recharge is a principal factor in controlling the release of contaminants via the groundwater pathway. The most common methods for estimating recharge are discussed in Chapter 2. Many factors affect recharge; the natural recharge at an undisturbed site is not necessarily representative either of the recharge that will occur after the site has been disturbed or of the flow of water into a disposal facility at the site. Factors affecting recharge are discussed in Chapter 2.At many sites engineered components are required for a LLW facility to meet performance requirements. Chapter 3 discusses the use of engineered barriers to control the flow of water in a LLW facility, with a particular emphasis on cover systems. Design options and the potential performance and degradation mechanisms of engineered components are also discussed.Water flow in a LLW disposal facility must be evaluated before construction of the facility. In addition, hydrologic performance must be predicted over a very long time frame. For these reasons, the hydrologic evaluation relies on the use of predictive modeling. In Chapter 4, the evaluation of unsaturated water flow modeling is discussed. A checklist of items is presented to guide the evaluation. Several computer simulation codes that were used in the examples (Chapter 6) are discussed with respect to this checklist. The codes used include HELP, UNSAT-H, and VAM3DCG.To provide a defensible estimate of water flow in a LLW disposal facility, the uncertainty associated with model predictions must be considered. Uncertainty arises because of the highly heterogeneous nature of most subsurface environments and the long time frame required in the analysis. Sources of uncertainty in hydrologic evaluation of the unsaturated zone and several approaches for analysis are discussed in Chapter 5. The methods of analysis discussed include a bounding approach, sensitivity analysis, and Monte Carlo simulation.To illustrate the application of the discussion in Chapters 2 through 5, two examples are presented in Chapter 6. The first example is of a below ground vault located in a humid environment. The second example looks at a shallow land burial facility located in an arid environment. The examples utilize actual site-specific data and realistic facility designs. The two examples illustrate the issues unique to humid and arid sites as well as the issues common to all LLW sites. Strategies for addressing the analytical difficulties arising in any complex hydrologic evaluation of the unsaturated zone are demonstrated.The report concludes with some final observations and recommendations.

Water-temperature, specific-conductance, and meteorological data for the Tualatin River basin, Oregon, 1994-95

USGS Publications Warehouse

Risley, John C.; Doyle, Micelis C.

1997-01-01

Water-temperature, air-temperature, specific- conductance, wind-speed, and solar-radiation data are presented from a study conducted in the Tualatin River Basin in northwestern Oregon during 7-month periods from May 1 through November 30, 1994 and May 1 through November 30, 1995. The study was done to assist local and State agencies in understanding temporal and spatial patterns of water temperatures in the river, determining the relation between water temperature and human activities, and developing urban and agricultural management strategies for controlling impacts on stream temperatures. Data were collected at 14 fixed-station continuous monitoring sites located on or near the main stem and major tributaries. Data fromtemperature and specific-conductance sites were collected instantaneously every 30 minutes on the hour and half hour. Wind-speed and solar-radiation data at two sites were averaged every 60 minutes. Wind-speed and solar-radiation data at a third site were averaged every 30 minutes. Water temperature data were also collected during seven synoptic surveys near the two main wastewater-treatment plants. The surveys were conducted during the low-flow period from August to October of 1994 and August to September 1995. During each survey, up to six recording temperature probes were positioned at locations upstream and downstream of plant effluent outlets. The probes collected data every 16 minutes over 48-hour periods.

Skin blood flow and local temperature independently modify sweat rate during passive heat stress in humans.

PubMed

Wingo, Jonathan E; Low, David A; Keller, David M; Brothers, R Matthew; Shibasaki, Manabu; Crandall, Craig G

2010-11-01

Sweat rate (SR) is reduced in locally cooled skin, which may result from decreased temperature and/or parallel reductions in skin blood flow. The purpose of this study was to test the hypotheses that decreased skin blood flow and decreased local temperature each independently attenuate sweating. In protocols I and II, eight subjects rested supine while wearing a water-perfused suit for the control of whole body skin and internal temperatures. While 34°C water perfused the suit, four microdialysis membranes were placed in posterior forearm skin not covered by the suit to manipulate skin blood flow using vasoactive agents. Each site was instrumented for control of local temperature and measurement of local SR (capacitance hygrometry) and skin blood flow (laser-Doppler flowmetry). In protocol I, two sites received norepinephrine to reduce skin blood flow, while two sites received Ringer solution (control). All sites were maintained at 34°C. In protocol II, all sites received 28 mM sodium nitroprusside to equalize skin blood flow between sites before local cooling to 20°C (2 sites) or maintenance at 34°C (2 sites). In both protocols, individuals were then passively heated to increase core temperature ~1°C. Both decreased skin blood flow and decreased local temperature attenuated the slope of the SR to mean body temperature relationship (2.0 ± 1.2 vs. 1.0 ± 0.7 mg·cm(-2)·min(-1)·°C(-1) for the effect of decreased skin blood flow, P = 0.01; 1.2 ± 0.9 vs. 0.07 ± 0.05 mg·cm(-2)·min(-1)·°C(-1) for the effect of decreased local temperature, P = 0.02). Furthermore, local cooling delayed the onset of sweating (mean body temperature of 37.5 ± 0.4 vs. 37.6 ± 0.4°C, P = 0.03). These data demonstrate that local cooling attenuates sweating by independent effects of decreased skin blood flow and decreased local skin temperature.

Is hyporheic flow an indicator for salmonid spawning site selection?

NASA Astrophysics Data System (ADS)

Benjankar, R. M.; Tonina, D.; Marzadri, A.; McKean, J. A.; Isaak, D.

2015-12-01

Several studies have investigated the role of hydraulic variables in the selection of spawning sites by salmonids. Some recent studies suggest that the intensity of the ambient hyporheic flow, that present without a salmon egg pocket, is a cue for spawning site selection, but others have argued against it. We tested this hypothesis by using a unique dataset of field surveyed spawning site locations and an unprecedented meter-scale resolution bathymetry of a 13.5 km long reach of Bear Valley Creek (Idaho, USA), an important Chinook salmon spawning stream. We used a two-dimensional surface water model to quantify stream hydraulics and a three-dimensional hyporheic model to quantify the hyporheic flows. Our results show that the intensity of ambient hyporheic flows is not a statistically significant variable for spawning site selection. Conversely, the intensity of the water surface curvature and the habitat quality, quantified as a function of stream hydraulics and morphology, are the most important variables for salmonid spawning site selection. KEY WORDS: Salmonid spawning habitat, pool-riffle system, habitat quality, surface water curvature, hyporheic flow

Changes in Black Carbon Deposition to Antarctica from Two Ice Core Records, A.D. 1850-2000

NASA Technical Reports Server (NTRS)

Bisiaux, Marion M.; Edward, Ross; McConnell, Joseph R.; Curran, Mark A. J.; VanOmmen, Tas D.; Smith, Andrew M.; Neumann, Thomas A.; Pasteris, Daniel R.; Penner, Joyce E.; Taylor, Kendrick

2012-01-01

Continuous flow analysis was based on a steady sample flow and in-line detection of BC and other chemical substances as described in McConnell et al. (2007). In the cold room, previously cut one meter ice core sticks of 3x3cm, are melted continuously on a heated melter head specifically designed to eliminate contamination from the atmosphere or by the external parts of the ice. The melted ice from the most inner part of the ice stick is continuously pumped by a peristaltic pump and carried to a clean lab by Teflon lines. The recorded signal is continuous, integrating a sample volume of about 0.05 mL, for which the temporal resolution depends on the speed of melting, ice density and snow accumulation rate at the ice core drilling site. For annual accumulation derived from the WAIS and Law Dome ice cores, we assumed 3.1 cm water equivalent uncertainty in each year's accumulation from short scale spatial variability (glaciological noise) which was determined from several measurements of annual accumulation in multiple parallel ice cores notably from the WAIS Divide ice core site (Banta et al., 2008) and from South Pole site (McConnell et al., 1997; McConnell et al., 2000). Refractory black carbon (rBC) concentrations were determined using the same method as in (Bisiaux et al., 2011) and adapted to continuous flow measurements as described by (McConnell et al., 2007). The technique uses a single particle intracavity laser induced incandescence photometer (SP2, Droplet Measurement Technologies, Boulder, Colorado) coupled to an ultrasonic nebulizer/desolvation (CETAC UT5000) Flow Injection Analysis (FIA). All analyses, sample preparation etc, were performed in a class 100 cleanroom using anti contamination "clean techniques". The samples were not acidified.

Hydrogeology, water quality, and potential for contamination of the Upper Floridan aquifer in the Silver Springs ground-water basin, central Marion County, Florida

USGS Publications Warehouse

Phelps, G.G.

1994-01-01

The Upper Floridan aquifer, composed of a thick sequence of very porous limestone and dolomite, is the principal source of water supply in the Silver Springs ground-water basin of central Marion County, Florida. The karstic nature of the local geology makes the aquifer susceptible to contaminants from the land surface. Contaminants can enter the aquifer by seepage through surficial deposits and through sinkholes and drainage wells. Potential contaminants include agricultural chemicals, landfill leachates and petroleum products from leaking storage tanks and accidental spills. More than 560 sites of potential contamination sources were identified in the basin in 1990. Detailed investigation of four sites were used to define hydrologic conditions at representative sites. Ground-water flow velocities determined from dye trace studies ranged from about 1 foot per hour under natural flow conditions to about 10 feet per hour under pumping conditions, which is considerably higher than velocities estimated using Darcy's equation for steady-state flow in a porous medium. Water entering the aquifer through drainage wells contained bacteria, elevated concentrations of nutrients, manganese and zinc, and in places, low concentrations of organic compounds. On the basis of results from the sampling of 34 wells in 1989 and 1990, and from the sampling of water entering the Upper Floridan aquifer through drainage wells, there has been no widespread degradation of water quality in the study area. In an area of karst, particularly one in which fracture flow is significant, evaluating the effects from contaminants is difficult and special care is required when interpolating hydrogeologic data from regional studies to a specific. (USGS)

Application of the surface azimuthal electrical resistivity survey method to determine patterns of regional joint orientation in glacial tills

USGS Publications Warehouse

Carlson, D.

2010-01-01

Joints within unconsolidated material such as glacial till can be primary avenues for the flow of electrical charge, water, and contaminants. To facilitate the siting and design of remediation programs, a need exists to map anisotropic distribution of such pathways within glacial tills by determining the azimuth of the dominant joint set. The azimuthal survey method uses standard resistivity equipment with a Wenner array rotated about a fixed center point at selected degree intervals that yields an apparent resistivity ellipse. From this ellipse, joint set orientation can be determined. Azimuthal surveys were conducted at 21 sites in a 500-km2 (193 mi2) area around Milwaukee, Wisconsin, and more specifically, at sites having more than 30 m (98 ft) of glacial till (to minimize the influence of underlying bedrock joints). The 26 azimuthal surveys revealed a systematic pattern to the trend of the dominant joint set within the tills, which is approximately parallel to ice flow direction during till deposition. The average orientation of the joint set parallel with the ice flow direction is N77??E and N37??E for the Oak Creek and Ozaukee tills, respectively. The mean difference between average direct observation of joint set orientations and average azimuthal resistivity results is 8??, which is one fifth of the difference of ice flow direction between the Ozaukee and Oak Creek tills. The results of this study suggest that the surface azimuthal electrical resistivity survey method used for local in situ studies can be a useful noninvasive method for delineating joint sets within shallow geologic material for regional studies. Copyright ?? 2010 The American Association of Petroleum Geologists/Division of Environmental Geosciences. All rights reserved.

Subcellular Redox Targeting: Bridging in Vitro and in Vivo Chemical Biology.

PubMed

Long, Marcus J C; Poganik, Jesse R; Ghosh, Souradyuti; Aye, Yimon

2017-03-17

Networks of redox sensor proteins within discrete microdomains regulate the flow of redox signaling. Yet, the inherent reactivity of redox signals complicates the study of specific redox events and pathways by traditional methods. Herein, we review designer chemistries capable of measuring flux and/or mimicking subcellular redox signaling at the cellular and organismal level. Such efforts have begun to decipher the logic underlying organelle-, site-, and target-specific redox signaling in vitro and in vivo. These data highlight chemical biology as a perfect gateway to interrogate how nature choreographs subcellular redox chemistry to drive precision redox biology.

Launch Vehicle Control Center Architectures

NASA Technical Reports Server (NTRS)

Watson, Michael D.; Epps, Amy; Woodruff, Van; Vachon, Michael Jacob; Monreal, Julio; Williams, Randall; McLaughlin, Tom

2014-01-01

This analysis is a survey of control center architectures of the NASA Space Launch System (SLS), United Launch Alliance (ULA) Atlas V and Delta IV, and the European Space Agency (ESA) Ariane 5. Each of these control center architectures have similarities in basic structure, and differences in functional distribution of responsibilities for the phases of operations: (a) Launch vehicles in the international community vary greatly in configuration and process; (b) Each launch site has a unique processing flow based on the specific configurations; (c) Launch and flight operations are managed through a set of control centers associated with each launch site, however the flight operations may be a different control center than the launch center; and (d) The engineering support centers are primarily located at the design center with a small engineering support team at the launch site.

Remedial options for creosote-contaminated sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu, W.J.; Delshad, M.; Oolman, T.

2000-03-31

Free-phase DNAPL recovery operations are becoming increasingly prevalent at creosote-contaminated aquifer sites. This paper illustrates the potential of both classical and innovative recovery methods. The UTCHEM multiphase flow and transport numerical simulator was used to predict the migration of creosote DNAPL during a hypothetical spill event, during a long-term redistribution after the spill, and for a variety of subsequent free-phase DNAPL recovery operations. The physical parameters used for the DNAPL and the aquifer in the model are estimates for the DNAPL and the aquifer in the model are estimates for a specific creosote DNAPL site. Other simulations were also conductedmore » using physical parameters that are typical of a trichloroethene (TCE) DNAPL. Dramatic differences in DNAPL migration were observed between these simulations.« less

Equations for estimating selected streamflow statistics in Rhode Island

USGS Publications Warehouse

Bent, Gardner C.; Steeves, Peter A.; Waite, Andrew M.

2014-01-01

The equations, which are based on data from streams with little to no flow alterations, will provide an estimate of the natural flows for a selected site. They will not estimate flows for altered sites with dams, surface-water withdrawals, groundwater withdrawals (pumping wells), diversions, and wastewater discharges. If the equations are used to estimate streamflow statistics for altered sites, the user should adjust the flow estimates for the alterations. The regression equations should be used only for ungaged sites with drainage areas between 0.52 and 294 square miles and stream densities between 0.94 and 3.49 miles per square mile; these are the ranges of the explanatory variables in the equations.

Methods for estimating low-flow statistics for Massachusetts streams

USGS Publications Warehouse

Ries, Kernell G.; Friesz, Paul J.

2000-01-01

Methods and computer software are described in this report for determining flow duration, low-flow frequency statistics, and August median flows. These low-flow statistics can be estimated for unregulated streams in Massachusetts using different methods depending on whether the location of interest is at a streamgaging station, a low-flow partial-record station, or an ungaged site where no data are available. Low-flow statistics for streamgaging stations can be estimated using standard U.S. Geological Survey methods described in the report. The MOVE.1 mathematical method and a graphical correlation method can be used to estimate low-flow statistics for low-flow partial-record stations. The MOVE.1 method is recommended when the relation between measured flows at a partial-record station and daily mean flows at a nearby, hydrologically similar streamgaging station is linear, and the graphical method is recommended when the relation is curved. Equations are presented for computing the variance and equivalent years of record for estimates of low-flow statistics for low-flow partial-record stations when either a single or multiple index stations are used to determine the estimates. The drainage-area ratio method or regression equations can be used to estimate low-flow statistics for ungaged sites where no data are available. The drainage-area ratio method is generally as accurate as or more accurate than regression estimates when the drainage-area ratio for an ungaged site is between 0.3 and 1.5 times the drainage area of the index data-collection site. Regression equations were developed to estimate the natural, long-term 99-, 98-, 95-, 90-, 85-, 80-, 75-, 70-, 60-, and 50-percent duration flows; the 7-day, 2-year and the 7-day, 10-year low flows; and the August median flow for ungaged sites in Massachusetts. Streamflow statistics and basin characteristics for 87 to 133 streamgaging stations and low-flow partial-record stations were used to develop the equations. The streamgaging stations had from 2 to 81 years of record, with a mean record length of 37 years. The low-flow partial-record stations had from 8 to 36 streamflow measurements, with a median of 14 measurements. All basin characteristics were determined from digital map data. The basin characteristics that were statistically significant in most of the final regression equations were drainage area, the area of stratified-drift deposits per unit of stream length plus 0.1, mean basin slope, and an indicator variable that was 0 in the eastern region and 1 in the western region of Massachusetts. The equations were developed by use of weighted-least-squares regression analyses, with weights assigned proportional to the years of record and inversely proportional to the variances of the streamflow statistics for the stations. Standard errors of prediction ranged from 70.7 to 17.5 percent for the equations to predict the 7-day, 10-year low flow and 50-percent duration flow, respectively. The equations are not applicable for use in the Southeast Coastal region of the State, or where basin characteristics for the selected ungaged site are outside the ranges of those for the stations used in the regression analyses. A World Wide Web application was developed that provides streamflow statistics for data collection stations from a data base and for ungaged sites by measuring the necessary basin characteristics for the site and solving the regression equations. Output provided by the Web application for ungaged sites includes a map of the drainage-basin boundary determined for the site, the measured basin characteristics, the estimated streamflow statistics, and 90-percent prediction intervals for the estimates. An equation is provided for combining regression and correlation estimates to obtain improved estimates of the streamflow statistics for low-flow partial-record stations. An equation is also provided for combining regression and drainage-area ratio estimates to obtain improved e

Effects of magnetic-fluid flow on structural instability of a carbon nanotube conveying nanoflow under a longitudinal magnetic field

NASA Astrophysics Data System (ADS)

Sadeghi-Goughari, Moslem; Jeon, Soo; Kwon, Hyock-Ju

2017-09-01

In drug delivery systems, carbon nanotubes (CNTs) can be used to deliver anticancer drugs into target site to kill metastatic cancer cells under the magnetic field guidance. Deep understanding of dynamic behavior of CNTs in drug delivery systems may enable more efficient use of the drugs while reducing systemic side effects. In this paper, we study the effect of magnetic-fluid flow on the structural instability of a CNT conveying nanoflow under a longitudinal magnetic field. The Navier-Stokes equation of magnetic-fluid flow is coupled with Euler-Bernoulli beam theory for modeling fluid structure interaction (FSI). Size effects of the magnetic fluid and the CNT are addressed through small-scale parameters including the Knudsen number (Kn) and the nonlocal parameter. Results show the positive role of magnetic properties of fluid flow on the structural stability of CNT. Specifically, magnetic force applied to the fluid flow has an effect of decreasing the structural stiffness of system while increasing the critical flow velocity. Furthermore, we discover that the nanoscale effects of CNT and fluid flow tend to amplify the influence of magnetic field on the vibrational behavior of the system.

Hercules Single-Stage Reusable Vehicle (HSRV) Operating Base

NASA Technical Reports Server (NTRS)

Moon, Michael J.; McCleskey, Carey M.

2017-01-01

Conceptual design for the layout of lunar-planetary surface support systems remains an important area needing further master planning. This paper explores a structured approach to organize the layout of a Mars-based site equipped for routinely flying a human-scale reusable taxi system. The proposed Hercules Transportation System requires a surface support capability to sustain its routine, affordable, and dependable operation. The approach organizes a conceptual Hercules operating base through functional station sets. The station set approach will allow follow-on work to trade design approaches and consider technologies for more efficient flow of material, energy, and information at future Mars bases and settlements. The station set requirements at a Mars site point to specific capabilities needed. By drawing from specific Hercules design characteristics, the technology requirements for surface-based systems will come into greater focus. This paper begins a comprehensive process for documenting functional needs, architectural design methods, and analysis techniques necessary for follow-on concept studies.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Seiple, Timothy E.; Coleman, André M.; Skaggs, Richard L.

Within the United States and Puerto Rico, publicly owned treatment works (POTWs) process 130.5 Gl/d (34.5 Bgal/d) of wastewater, producing sludge as a waste product. Emerging technologies offer novel waste-to-energy pathways through whole sludge conversion into biofuels. Assessing the feasibility, scalability and tradeoffs of various energy conversion pathways is difficult in the absence of highly spatially resolved estimates of sludge production. In this study, average wastewater solids concentrations and removal rates, and site specific daily average influent flow are used to estimate site specific annual sludge production on a dry weight basis for >15,000 POTWs. Current beneficial uses, regional productionmore » hotspots and feedstock aggregation potential are also assessed. Analyses indicate 1) POTWs capture 12.56 Tg/y (13.84 MT/y) of dry solids; 2) 50% are not beneficially utilized, and 3) POTWs can support seven regions that aggregate >910 Mg/d (1000 T/d) of sludge within a travel distance of 100 km.« less

Topographic Change Detection at Select Archeological Sites in Grand Canyon National Park, Arizona, 2006-2007

USGS Publications Warehouse

Collins, Brian D.; Minasian, Diane L.; Kayen, Robert

2009-01-01

Topographic change of archeological sites within the Colorado River corridor of Grand Canyon National Park (GCNP) is a subject of interest to National Park Service managers and other stakeholders in the Glen Canyon Dam Adaptive Management Program. Although long-term topographic change resulting from a variety of natural processes is typical in the Grand Canyon region, a continuing debate exists on whether and how controlled releases from Glen Canyon Dam, located immediately upstream of GCNP, are impacting rates of site erosion, artifact transport, and the preservation of archeological resources. Continued erosion of archeological sites threatens both the archeological resources and our future ability to study evidence of past cultural habitation. Understanding the causes and effects of archaeological site erosion requires a knowledge of several factors including the location and magnitude of the changes occurring in relation to archeological resources, the rate of the changes, and the relative contribution of several potential causes, including sediment depletion associated with managed flows from Glen Canyon Dam, site-specific weather patterns, visitor impacts, and long-term climate change. To obtain this information, highly accurate, spatially specific data are needed from sites undergoing change. Using terrestrial lidar data collection techniques and novel TIN- and GRID-based change-detection post-processing methods, we analyzed topographic data for nine archeological sites. The data were collected using three separate data collection efforts spanning 16 months (May 2006 to September 2007). Our results documented positive evidence of erosion, deposition, or both at six of the nine sites investigated during this time interval. In addition, we observed possible signs of change at two of the other sites. Erosion was concentrated in established gully drainages and averaged 12 cm to 17 cm in depth with maximum depths of 50 cm. Deposition was concentrated at specific locations outside of drainages but generally was spread over larger areas (tens to hundreds of square meters). Maximum depths of deposition averaged 12 cm to 15 cm and reached as much as 35 cm. Overall, we found that the spatial distribution and magnitudes of surface change are specific to each site and that a thorough understanding of the geomorphology, weather, and sand supply is requisite for a complete understanding of the data. Additional work in combining these results with site-specific weather, hydrology, and geomorphology data will assist in the development of working models for determining the causes of the documented topographic changes.

Hydrologic and geologic characteristics of the Yucca Mountain site relevant to the performance of a potential repository: Day 1, Las Vegas, Nevada to Pahrump, Nevada: Stop 6A. Keane Wonder Spring and regional groundwater flow in the Death Valley region

USGS Publications Warehouse

Steinkampf, W.C.

2000-01-01

Yucca Mountain, located ~100 mi northwest of Las Vegas, Nevada, has been designated by Congress as a site to be characterized for a potential mined geologic repository for high-level radioactive waste. This field trip will examine the regional geologic and hydrologic setting for Yucca Mountain, as well as specific results of the site characterization program, The first day focuses on the regional seeing with emphasis on current and paleo hydrology, which are both of critical concern for predicting future performance of a potential repository. Morning stops will be in southern Nevada and afternoon stops will be in Death Valley. The second day will be spent at Yucca Mountain. The filed trip will visit the underground testing sites in the "Exploratory Studies Facility" and the "Busted Butte Unsaturated Zone Transport Field Test" plus several surface-based testing sites. Much of the work at the site has concentrated on studies of the unsaturated zone, and element of the hydrologic system that historically has received little attention. Discussions during the second day will comprise selected topics of Yucca Mountain geology, mic hazard in the Yucca Mountain area. Evening discussions will address modeling of regional groundwater flow, the geology and hydrology of Yucca Mountain to the performance of a potential repository. Day 3 will examine the geologic framework and hydrology of the Pahute Mesa-Oasis Valley Groundwater Basin and then will continue to Reno via Hawthorne, Nevada and the Walker Lake area.

Nonstationarity of low flows and their timing in the eastern United States

NASA Astrophysics Data System (ADS)

Sadri, S.; Kam, J.; Sheffield, J.

2015-03-01

The analysis of the spatial and temporal patterns of low flows as well as their generation mechanisms over large geographic regions can provide valuable insights and understanding for climate change impacts, regional frequency analysis, risk assessment of extreme events, and decision-making regarding allowable withdrawals. We use nonparametric tests to identify abrupt and gradual changes in time series of low flows and their timing for 508 USGS streamflow gauging sites in the eastern US with more than 50 years of daily data, to systematically distinguish the effects of human intervention from those of climate variability. A time series decomposition algorithm was applied to 1 day, 7 day, 30 day, and 90 day annual low flow time series that combines the Box-Ljung test for detection of autocorrelation, the Pettitt test for abrupt step changes and the Mann-Kendall test for monotonic trends. Examination of the USGS notes for each site confirmed that many of the step changes and around half of the sites with an increasing trend were associated with regulation. Around a third of the sites with a decreasing trend were associated with a change of gauge datum. Overall, a general pattern of increasing low flows in the northeast and decreasing low flows in the southeast is evident over a common time period (1951-2005), even when discarding sites with significant autocorrelation, documented regulation or other human impacts. The north-south pattern of trends is consistent with changes in antecedent precipitation. The main exception is along the mid-Atlantic coastal aquifer system from eastern Virginia northwards, where low flows have decreased despite increasing precipitation, and suggests that declining groundwater levels due to pumping may have contributed to decreased low flows. For most sites, the majority of low flows occur in one season in the late summer to autumn, as driven by the lower precipitation and higher evaporative demand in this season, but this is complicated in many regions because of the presence of a secondary low flow season in the winter for sites in the extreme northeast and in the spring for sites in Florida. Trends in low flow timing are generally undetectable, although abrupt step changes appear to be associated with regulation.

A logistic regression equation for estimating the probability of a stream in Vermont having intermittent flow

USGS Publications Warehouse

Olson, Scott A.; Brouillette, Michael C.

2006-01-01

A logistic regression equation was developed for estimating the probability of a stream flowing intermittently at unregulated, rural stream sites in Vermont. These determinations can be used for a wide variety of regulatory and planning efforts at the Federal, State, regional, county and town levels, including such applications as assessing fish and wildlife habitats, wetlands classifications, recreational opportunities, water-supply potential, waste-assimilation capacities, and sediment transport. The equation will be used to create a derived product for the Vermont Hydrography Dataset having the streamflow characteristic of 'intermittent' or 'perennial.' The Vermont Hydrography Dataset is Vermont's implementation of the National Hydrography Dataset and was created at a scale of 1:5,000 based on statewide digital orthophotos. The equation was developed by relating field-verified perennial or intermittent status of a stream site during normal summer low-streamflow conditions in the summer of 2005 to selected basin characteristics of naturally flowing streams in Vermont. The database used to develop the equation included 682 stream sites with drainage areas ranging from 0.05 to 5.0 square miles. When the 682 sites were observed, 126 were intermittent (had no flow at the time of the observation) and 556 were perennial (had flowing water at the time of the observation). The results of the logistic regression analysis indicate that the probability of a stream having intermittent flow in Vermont is a function of drainage area, elevation of the site, the ratio of basin relief to basin perimeter, and the areal percentage of well- and moderately well-drained soils in the basin. Using a probability cutpoint (a lower probability indicates the site has perennial flow and a higher probability indicates the site has intermittent flow) of 0.5, the logistic regression equation correctly predicted the perennial or intermittent status of 116 test sites 85 percent of the time.

Site-specific thromboembolism: a novel animal model for stroke.

PubMed

Ringer, Andrew J; Guterman, Lee R; Hopkins, L Nelson

2004-02-01

To develop a technique for site-specific placement of a thrombus of predetermined volume in an animal model for the purpose of evaluating methods of intravascular thrombolysis and clot retrieval. Six swine were subjected to thrombus injection bilaterally in the ascending pharyngeal artery (APA). Each animal underwent transfemoral angiography while under general anesthesia. A nondetachable balloon catheter and a 3-French microcatheter were then advanced into the common carotid artery through a 7-French guide catheter. With the microcatheter in the proximal APA and the balloon inflated proximally, a bolus of preformed thrombus composed of 0.9 mL of autologous blood and 0.1 mL of bovine thrombin (200 IU/mL) was injected through the microcatheter while local flow arrest was maintained for 15 min. The balloon was deflated and removed. The occluded arteries were observed by serial angiography for 3 hr and then resected for gross examination and hematoxylin and eosin staining. Each APA was occluded angiographically and did not recanalize during the 3-hr observation period. Persistent, proximal progression of thrombus to the superior thyroid artery origin occurred in three animals. Gross inspection revealed that the resected arteries contained thrombus in the proximal APA but not in the common carotid artery. Histologic examination revealed organized thrombus, without evidence of intimal injury. Our model provides a simple, reliable method for site-specific injection of a thrombus of predetermined volume. Site-specific placement is important for evaluation of the efficacy of thrombolytic agents and techniques. Angiographic evidence of brain revascularization can be used to grade revascularization and clot volume. The ability to specifically localize and estimate clot volume makes our model well suited for the evaluation and comparison of thrombolytic agents and endovascular techniques.

Estimates of hydraulic properties from a one-dimensional numerical model of vertical aquifer-system deformation, Lorenzi site, Las Vegas, Nevada

USGS Publications Warehouse

Pavelko, Michael T.

2004-01-01

Land subsidence related to aquifer-system compaction and ground-water withdrawals has been occurring in Las Vegas Valley, Nevada, since the 1930's, and by the late 1980's some areas in the valley had subsided more than 5 feet. Since the late 1980's, seasonal artificial-recharge programs have lessened the effects of summertime pumping on aquifer-system compaction, but the long-term trend of compaction continues in places. Since 1994, the U.S. Geological Survey has continuously monitored water-level changes in three piezometers and vertical aquifer-system deformation with a borehole extensometer at the Lorenzi site in Las Vegas, Nevada. A one-dimensional, numerical, ground-water flow model of the aquifer system below the Lorenzi site was developed for the period 1901-2000, to estimate aquitard vertical hydraulic conductivity, aquitard inelastic skeletal specific storage, and aquitard and aquifer elastic skeletal specific storage. Aquifer water-level data were used in the model as the aquifer-system stresses that controlled simulated vertical aquifer-system deformation. Nonlinear-regression methods were used to calibrate the model, utilizing estimated and measured aquifer-system deformation data to minimize a weighted least-squares objective function, and estimate optimal property values. Model results indicate that at the Lorenzi site, aquitard vertical hydraulic conductivity is 3 x 10-6 feet per day, aquitard inelastic skeletal specific storage is 4 x 10-5 per foot, aquitard elastic skeletal specific storage is 5 x 10-6 per foot, and aquifer elastic skeletal specific storage is 3 x 10-7 per foot. Regression statistics indicate that the model and data provided sufficient information to estimate the target properties, the model adequately simulated observed data, and the estimated property values are accurate and unique.

PERFORMING QUALITY FLOW MEASUREMENTS AT MINE SITES

EPA Science Inventory

Accurate flow measurement data is vital to research, monitoring, and remediation efforts at mining sites. This guidebook has been prepared to provide a summary of information relating to the performance of low measurements, and how this information can be applied at mining sites....

Transferability of a Three-Dimensional Air Quality Model between Two Different Sites in Complex Terrain.

NASA Astrophysics Data System (ADS)

Lange, Rolf

1989-07-01

The three-dimensional, diagnostic, particle-in-cell transport and diffusion model MATHEW/ADPIC is used to test its transferability from one site in complex terrain to another with different characteristics, under stable nighttime drainage flow conditions. The two sites were subject to extensive drainage flow tracer experiments under the multilaboratory Atmospheric Studies in Complex Terrain (ASCOT) program: the first being a valley in the Geysers geothermal region of northern California, and the second a canyon in western Colorado. The domain in each case is approximately 10 × 10 km. The 1980 Geysers model evaluation is only quoted. The 1984 Brush Creek model evaluation is described in detail.Results from comparing computed with measured concentrations from a variety of tracer releases indicate that 52% of the 4531 samples from five experiments in Brush Creek and 50% of the 831 samples from four experiments in the Geysers agreed within a factor of 5. When an angular 10° uncertainty, consistent with anemometer reliability limits in complex terrain, was allowed to be applied to the model results, model performance improved such that 78% of samples compared within a factor of 5 for Brush Creek and 77% for the Geysers. Looking at the range of other factors of concentration ratios, results indicate that the model is satisfactorily transferable without tuning it to a specific site.

Burn Severity Based Stream Buffers for Post Wildfire Salvage Logging Erosion

NASA Astrophysics Data System (ADS)

Bone, E. D.; Robichaud, P. R.; Brooks, E. S.; Brown, R. E.

2017-12-01

Riparian buffers may be managed for timber harvest disturbances to decrease the risk of hillslope erosion entering stream channels during runoff events. After a wildfire, burned riparian buffers may become less efficient at infiltrating runoff and reducing sedimentation, requiring wider dimensions. Testing riparian buffers under post-wildfire conditions may provide managers guidance on how to manage post-fire salvage logging operations on hillslopes and protect water quality in adjacent streams. We tested burned, unlogged hillslopes at the 2015 North Star Fire and 2016 Cayuse Mountain Fire locations in Washington, USA for their ability to reduce runoff flows and sedimentation. Our objectives were to: 1) measure the travel distances of concentrated flows using three sediment-laden flow rates, 2) measure the change in sediment concentration as each flow moves downslope, 3) test hillslopes under high burn-severity, low burn-severity and unburned conditions, and 4) conduct experiments at 0, 1 and 2 years since the fire events. Mean total flow length at the North Star Fire in year 1 was 211% greater at low burn-severity sites than unburned sites, and 467% greater at high burn-severity sites than unburned sites. Results decreased for all burned sites in year 2; by 40% at the high burn-severity sites, and by 30% at the low burn-severity sites, with no significant changes at the unburned sites. We tested only high burn-severity sites at the Cayuse Mountain Fire in year 0 and 1 where the mean total flow length between year 0 and year 1 decreased by 65%. The results of sediment concentration changes tracked closely with the magnitude of changes in flow travel lengths between treatments. Results indicate that managers may need to increase the widths of burned stream buffers during post-wildfire salvage logging for water quality protection, but stream buffer widths may decrease with less severe burn severity and increasing elapsed time (years) since fire.

Evaluation of water quality, suspended sediment, and stream morphology with an emphasis on effects of stormwater on Fountain and Monument Creek basins, Colorado Springs and vicinity, Colorado, 1981-2001

USGS Publications Warehouse

Edelmann, Patrick; Ferguson, Sheryl A.; Stogner, Sr., Robert W.; August, Marianne; Payne, William F.; Bruce, James F.

2002-01-01

This report documents water quality and suspended sediment with an emphasis on evaluating the effects of stormflow on Fountain Creek Basin in the vicinity of Colorado Springs, Colorado. Water-quality data collected at 11 sites between 1981 and 2001 were used to evaluate the effects of stormflow on water quality. Suspended-sediment data collected at seven sites from 1998 through 2001 were used to evaluate effects of stormflow on suspended-sediment concentrations, discharges, and yields. Data were separated into three flow regimes: base flow, normal flow, and stormflow. A comparison of stormwater-quality concentrations measured between 1981 and 2001 to Colorado acute instream standards indicated that, except for isolated occurrences, stormwater quality met acute instream standards. At several sites, 5-day biochemical oxygen demand, fecal coliform, and selected nutrient concentrations tended to be highest during stormflow and lowest during base flow. Dissimilar to the other nutrients, dissolved nitrite plus nitrate concentrations generally were highest during base flow and lowest during stormflow. Most dissolved trace-element concentrations associated with stormflow decreased or showed little change compared to base flow. However, median concentrations of total copper, iron, lead, nickel, manganese, and zinc for stormflow samples generally were much larger than nonstorm samples. The substantially larger concentrations of total copper, iron, lead, nickel, manganese, and zinc measured at site 5800 during stormflow as compared to other sites indicates a relatively large source of these metals in the reach between sites 5530 and 5800. Semi-volatile organic compounds in samples collected during stormflow were detected relatively infrequently at the four sites monitored; however, analysis of pesticide data collected during stormflow showed a relatively frequent detection of pesticides at low levels. Nitrogen, phosphorus, and particulate trace-element loads substantially increased during stormflow. Suspended-sediment concentrations, discharges, and yields associated with stormflow were significantly greater than during normal flow. Depending on the site and year, suspended-sediment concentrations associated with storm-flow generally were 3 to10 times greater than concentrations measured during normal flow, and suspended-sediment discharges were usually more than 10 times greater during stormflow. The April through October cumulative suspended-sediment discharges and streamflows were largest in 1999 at all sites. Although large spatial variations in suspended-sediment yields occurred during normal flows, the suspended-sediment yields associated with stormflow generally were more than 10 times greater than the suspended-sediment yields that occurred during normal flow. The smallest suspended-sediment yields generally were less than 1 ton per day per square mile during stormflow. The largest suspended-sediment yields occurred at sites located in the Cottonwood Creek Basin and were greater than 10 tons per day per square mile.

Comprehensive Laboratory Evaluation of a Highly Specific Lateral Flow Assay for the Presumptive Identification of Bacillus anthracis Spores in Suspicious White Powders and Environmental Samples

PubMed Central

Ramage, Jason G.; Prentice, Kristin W.; DePalma, Lindsay; Venkateswaran, Kodumudi S.; Chivukula, Sruti; Chapman, Carol; Bell, Melissa; Datta, Shomik; Singh, Ajay; Hoffmaster, Alex; Sarwar, Jawad; Parameswaran, Nishanth; Joshi, Mrinmayi; Thirunavkkarasu, Nagarajan; Krishnan, Viswanathan; Morse, Stephen; Avila, Julie R.; Sharma, Shashi; Estacio, Peter L.; Stanker, Larry; Hodge, David R.

2016-01-01

We conducted a comprehensive, multiphase laboratory evaluation of the Anthrax BioThreat Alert® test strip, a lateral flow immunoassay (LFA) for the rapid detection of Bacillus anthracis spores. The study, conducted at 2 sites, evaluated this assay for the detection of spores from the Ames and Sterne strains of B. anthracis, as well as those from an additional 22 strains. Phylogenetic near neighbors, environmental background organisms, white powders, and environmental samples were also tested. The Anthrax LFA demonstrated a limit of detection of about 106 spores/mL (ca. 1.5 × 105 spores/assay). In this study, overall sensitivity of the LFA was 99.3%, and the specificity was 98.6%. The results indicated that the specificity, sensitivity, limit of detection, dynamic range, and repeatability of the assay support its use in the field for the purpose of qualitatively evaluating suspicious white powders and environmental samples for the presumptive presence of B. anthracis spores. PMID:27661796

Time of travel and dispersion in a selected reach of Roberts Creek, Clayton County, Iowa

USGS Publications Warehouse

Kolpin, D.W.; Kalkhoff, S.J.

1992-01-01

Time of travel was determined by dye tracing, using rhodamine WT as the tracer. One dyeinjection site and three sampling sites were used to measure time of travel. Two dye-tracing tests were conducted at discharges having flow-duration values of 48 and 80 percent. The discharges at the time of the two dye-tracing tests approximated medium- and low-flow conditions. The average stream velocity in the study area was 0.23 foot per second during medium-flow conditions, March 20 to 22,1990, and 0.07 foot per second during low-flow conditions, April 30 to May 12, 1990. The injected dye dispersed in a plume that lasted about 18 hours during medium flow and about 64 hours during low flow at the downstream site.

Darcy Flow in a Wavy Channel Filled with a Porous Medium

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gray, Donald D; Ogretim, Egemen; Bromhal, Grant S

2013-05-17

Flow in channels bounded by wavy or corrugated walls is of interest in both technological and geological contexts. This paper presents an analytical solution for the steady Darcy flow of an incompressible fluid through a homogeneous, isotropic porous medium filling a channel bounded by symmetric wavy walls. This packed channel may represent an idealized packed fracture, a situation which is of interest as a potential pathway for the leakage of carbon dioxide from a geological sequestration site. The channel walls change from parallel planes, to small amplitude sine waves, to large amplitude nonsinusoidal waves as certain parameters are increased. Themore » direction of gravity is arbitrary. A plot of piezometric head against distance in the direction of mean flow changes from a straight line for parallel planes to a series of steeply sloping sections in the reaches of small aperture alternating with nearly constant sections in the large aperture bulges. Expressions are given for the stream function, specific discharge, piezometric head, and pressure.« less

Shocking Path of Least Resistance Shines Light on Subsurface by Revealing the Paths of Water and the Presence of Faults: Stacked EM Case Studies over Barite Hills Superfund Site in South Carolina

NASA Astrophysics Data System (ADS)

Haggar, K. S.; Nelson, H. R., Jr.; Berent, L. J.

2017-12-01

The Barite Hills/Nevada Gold Fields mines are in Late Proterozoic and early Paleozoic rocks of the gold and iron sulfides rich Carolina slate belt. The mines were active from 1989 to1995. EPA and USGS site investigations in 2003 resulted in the declaration of the waste pit areas as a superfund site. The USGS and private consulting firms have evaluated subsurface water flow paths, faults & other groundwater-related features at this superfund site utilizing 2-D conductivity & 3-D electromagnetic (EM) surveys. The USGS employed conductivity to generate instantaneous 2-D profiles to evaluate shallow groundwater patterns. Porous regolith sediments, contaminated water & mine debris have high conductivity whereas bedrock is identified by its characteristic low conductivity readings. Consulting contractors integrated EM technology, magnetic & shallow well data to generate 3-D images of groundwater flow paths at given depths across the superfund site. In so doing several previously undetected faults were identified. Lighting strike data was integrated with the previously evaluated electrical and EM data to determine whether this form of natural-sourced EM data could complement and supplement the more traditional geophysical data described above. Several lightning attributes derived from 3-D lightning volumes were found to correlate to various features identified in the previous geophysical studies. Specifically, the attributes Apparent Resistivity, Apparent Permittivity, Peak Current & Tidal Gravity provided the deepest structural geological framework & provided insights into rock properties & earth tides. Most significantly, Peak Current showed remarkable coincidence with the preferred groundwater flow map identified by one of the contractors utilizing EM technology. This study demonstrates the utility of robust integrated EM technology applications for projects focused on hydrology, geohazards to dams, levees, and structures, as well as mineral and hydrocarbon exploration.

Water Quality in the Arthur R. Marshall Loxahatchee National Wildlife Refuge - Trends and Spatial Characteristics of Selected Constituents, 1974-2004

USGS Publications Warehouse

Miller, Ronald L.; McPherson, Benjamin F.

2008-01-01

Water quality in the interior marsh of the Arthur R. Marshall Loxahatchee National Wildlife Refuge is characterized by low concentrations of major ions, principally sodium and chloride, and is affected primarily by natural seasonal processes, such as evapotranspiration, rainfall, and biological activity. During the dry season, evapotranspiration exceeds precipitation, and specific conductance and conservative ion concentrations at marsh background sites typically increase by 40-70 percent between the end of the rainy season in September and the end of the dry season in May. Water enters the Refuge mainly from rainfall and perimeter canals. Water is pumped into the perimeter canals from large pumping stations, such as S-5A and S-6. In recent years, much of the water pumped into the Refuge passes through Stormwater Treatment Areas (STAs) before being released into the perimeter canals that surround the Refuge. Since 2001, water at S-6 has been diverted south toward STA-2, away from the Refuge perimeter canals. Water from S-5A and S-6 flows through agricultural lands with intense agricultural activity and typically contains relatively high concentrations of major ions, nutrients, and pesticides. Specific conductance, major-ion concentrations, and nutrient concentrations are an order of magnitude higher at S-5A and S-6 canal sites than at interior marsh sites. Water quality in the marsh bordering the canals can be affected substantially by the canal water, and these effects can extend several miles or more into the marsh depending on location in the Refuge and on the water level in the canals. As canal water flows into the marsh, processes such as uptake by periphyton and rooted vegetation and settling of particulate matter reduce the concentrations of nutrients to a greater extent than conservative ions such as chloride. Long- and short-term trends for specific conductance, chloride ion, sulfate ion, total phosphorus, and total nitrogen at five sites were evaluated primarily using an uncensored seasonal Kendall test with a water-level adjustment to reduce the effects of long wet or dry periods. Significant long-term trends (1974-2003) for specific conductance, chloride, total phosphorus, and total nitrogen at canal sites S-5A and S-6 were generally downward. Of the five sites, S-5A had the most pronounced decline for specific conductance at about -340 microsiemens per centimeter (?S/cm), followed by S-6 with a decline of about -280 ?S/cm. The two internal marsh sites, LOX8 and LOX13, had significant long-term trends in specific conductance of about +37 and -36 ?S/cm, respectively. Long-term trends for other constituents at the two internal marsh sites were generally small in magnitude or not measurable between 1978 and 2003. Marsh site LOX15 near the Hillsboro Canal showed no long-term trends, although specific conductance and sulfate concentration increased about 560 ?S/cm and 30 milligrams per liter, respectively, from 1998 to 2002. Site LOX15 is influenced strongly by intrusions of canal water, and increases in specific conductance and sulfate at this site coincided with increased canal-water inflows from STA-1W between 2001 and 2003. Median concentrations at LOX13 and S-5A were used to represent background and canal concentrations, respectively. Based on these values, the median chloride concentration at LOX15 indicates that the water is typically about 31 percent canal water and 69 percent ?natural? background water. Using median sulfate concentrations, similarly to chloride, the fraction of water at LOX15 was estimated to be 17 percent from canals and 83 percent from ?natural? background water. This finding suggests that in the low sulfate environment of the Refuge, sulfate is not conservative and only about half of the sulfate from canal water typically reaches LOX15; the rest presumably is removed by marsh plants, algae, and bottom sediments. Concentrations of pesticides and other organic compounds were measured

Detection of Site-Specific Blood Flow Variation in Humans during Running by a Wearable Laser Doppler Flowmeter.

PubMed

Iwasaki, Wataru; Nogami, Hirofumi; Takeuchi, Satoshi; Furue, Masutaka; Higurashi, Eiji; Sawada, Renshi

2015-10-05

Wearable wireless physiological sensors are helpful for monitoring and maintaining human health. Blood flow contains abundant physiological information but it is hard to measure blood flow during exercise using conventional blood flowmeters because of their size, weight, and use of optic fibers. To resolve these disadvantages, we previously developed a micro integrated laser Doppler blood flowmeter using microelectromechanical systems technology. This micro blood flowmeter is wearable and capable of stable measurement signals even during movement. Therefore, we attempted to measure skin blood flow at the forehead, fingertip, and earlobe of seven young men while running as a pilot experiment to extend the utility of the micro blood flowmeter. We measured blood flow in each subject at velocities of 6, 8, and 10 km/h. We succeeded in obtaining stable measurements of blood flow, with few motion artifacts, using the micro blood flowmeter, and the pulse wave signal and motion artifacts were clearly separated by conducting frequency analysis. Furthermore, the results showed that the extent of the changes in blood flow depended on the intensity of exercise as well as previous work with an ergometer. Thus, we demonstrated the capability of this wearable blood flow sensor for measurement during exercise.

Preferential transport of isoproturon at a plot scale and a field scale tile-drained site

NASA Astrophysics Data System (ADS)

Zehe, Erwin; Flühler, Hannes

2001-06-01

Irrigation experiments using the tracers Brilliant Blue (BB) and Bromide (Br) were conducted on three plots of 1.4×1.4 m 2 (plot scale) and a field scale subsurface drained test site (900 m 2) to clarify mechanisms causing rapid transport of surface applied Isoproturon (IPU) during preferential flow events. One of the small plots (site 10) and the field scale test site are located on the same field. One day after irrigation of the plot scale sites the Br and IPU concentration in two vertical soil profiles as well as the macroporousity on separate profiles and hydraulic properties of single macropores were determined. During irrigation of the field scale test site discharge, soil moisture as well as the concentration of IPU and Br in the drainage outlet were measured. Preferential flow in deep penetrating earthworm burrows caused a fast breakthrough of IPU and Br into the tile drain (1.2 m depth) at the field scale site as well as leaching of IPU into the subsoil (>0.8 m) at site 10. The results suggest a hierarchy of preconditions for the occurrence of preferential flow events of which a sufficient number of deep penetrating macropores interconnected to the soil surface seems to be the most important one. Moreover there is evidence that facilitated transport of IPU attached to mobile soil particles occurred during the preferential flow events at the field scale site and site 10. The susceptibility for preferential flow as well as the susceptibility for facilitated transport appear to be intrinsic properties of the investigated soil.

Comparison of methods for estimating ground-water recharge and base flow at a small watershed underlain by fractured bedrock in the Eastern United States

USGS Publications Warehouse

Risser, Dennis W.; Gburek, William J.; Folmar, Gordon J.

2005-01-01

This study by the U.S. Geological Survey (USGS), in cooperation with the Agricultural Research Service (ARS), U.S. Department of Agriculture, compared multiple methods for estimating ground-water recharge and base flow (as a proxy for recharge) at sites in east-central Pennsylvania underlain by fractured bedrock and representative of a humid-continental climate. This study was one of several within the USGS Ground-Water Resources Program designed to provide an improved understanding of methods for estimating recharge in the eastern United States. Recharge was estimated on a monthly and annual basis using four methods?(1) unsaturated-zone drainage collected in gravity lysimeters, (2) daily water balance, (3) water-table fluctuations in wells, and (4) equations of Rorabaugh. Base flow was estimated by streamflow-hydrograph separation using the computer programs PART and HYSEP. Estimates of recharge and base flow were compared for an 8-year period (1994-2001) coinciding with operation of the gravity lysimeters at an experimental recharge site (Masser Recharge Site) and a longer 34-year period (1968-2001), for which climate and streamflow data were available on a 2.8-square-mile watershed (WE-38 watershed). Estimates of mean-annual recharge at the Masser Recharge Site and WE-38 watershed for 1994-2001 ranged from 9.9 to 14.0 inches (24 to 33 percent of precipitation). Recharge, in inches, from the various methods was: unsaturated-zone drainage, 12.2; daily water balance, 12.3; Rorabaugh equations with PULSE, 10.2, or RORA, 14.0; and water-table fluctuations, 9.9. Mean-annual base flow from streamflow-hydrograph separation ranged from 9.0 to 11.6 inches (21-28 percent of precipitation). Base flow, in inches, from the various methods was: PART, 10.7; HYSEP Local Minimum, 9.0; HYSEP Sliding Interval, 11.5; and HYSEP Fixed Interval, 11.6. Estimating recharge from multiple methods is useful, but the inherent differences of the methods must be considered when comparing results. For example, although unsaturated-zone drainage from the gravity lysimeters provided the most direct measure of potential recharge, it does not incorporate spatial variability that is contained in watershed-wide estimates of net recharge from the Rorabaugh equations or base flow from streamflow-hydrograph separation. This study showed that water-level fluctuations, in particular, should be used with caution to estimate recharge in low-storage fractured-rock aquifers because of the variability of water-level response among wells and sensitivity of recharge to small errors in estimating specific yield. To bracket the largest range of plausible recharge, results from this study indicate that recharge derived from RORA should be compared with base flow from the Local-Minimum version of HYSEP.

FATE AND TRANSPORT MODELING OF CONTAMINANTS OF CONCERN FROM A CAFO IN AN AGRICULTURAL WATERSHED

EPA Science Inventory

The groundwater flow and transport modeling effort will require hydrogeological site characterization and the development of a conceptual flow model for the site. Site characterization will involve an assessment of both the surface and subsurface and be accomplished through joint...

Estimating Flow-Duration and Low-Flow Frequency Statistics for Unregulated Streams in Oregon

USGS Publications Warehouse

Risley, John; Stonewall, Adam J.; Haluska, Tana

2008-01-01

Flow statistical datasets, basin-characteristic datasets, and regression equations were developed to provide decision makers with surface-water information needed for activities such as water-quality regulation, water-rights adjudication, biological habitat assessment, infrastructure design, and water-supply planning and management. The flow statistics, which included annual and monthly period of record flow durations (5th, 10th, 25th, 50th, and 95th percent exceedances) and annual and monthly 7-day, 10-year (7Q10) and 7-day, 2-year (7Q2) low flows, were computed at 466 streamflow-gaging stations at sites with unregulated flow conditions throughout Oregon and adjacent areas of neighboring States. Regression equations, created from the flow statistics and basin characteristics of the stations, can be used to estimate flow statistics at ungaged stream sites in Oregon. The study area was divided into 10 regression modeling regions based on ecological, topographic, geologic, hydrologic, and climatic criteria. In total, 910 annual and monthly regression equations were created to predict the 7 flow statistics in the 10 regions. Equations to predict the five flow-duration exceedance percentages and the two low-flow frequency statistics were created with Ordinary Least Squares and Generalized Least Squares regression, respectively. The standard errors of estimate of the equations created to predict the 5th and 95th percent exceedances had medians of 42.4 and 64.4 percent, respectively. The standard errors of prediction of the equations created to predict the 7Q2 and 7Q10 low-flow statistics had medians of 51.7 and 61.2 percent, respectively. Standard errors for regression equations for sites in western Oregon were smaller than those in eastern Oregon partly because of a greater density of available streamflow-gaging stations in western Oregon than eastern Oregon. High-flow regression equations (such as the 5th and 10th percent exceedances) also generally were more accurate than the low-flow regression equations (such as the 95th percent exceedance and 7Q10 low-flow statistic). The regression equations predict unregulated flow conditions in Oregon. Flow estimates need to be adjusted if they are used at ungaged sites that are regulated by reservoirs or affected by water-supply and agricultural withdrawals if actual flow conditions are of interest. The regression equations are installed in the USGS StreamStats Web-based tool (http://water.usgs.gov/osw/streamstats/index.html, accessed July 16, 2008). StreamStats provides users with a set of annual and monthly flow-duration and low-flow frequency estimates for ungaged sites in Oregon in addition to the basin characteristics for the sites. Prediction intervals at the 90-percent confidence level also are automatically computed.

Spiral Laminar Flow: a Survey of a Three-Dimensional Arterial Flow Pattern in a Group of Volunteers.

PubMed

Stonebridge, P A; Suttie, S A; Ross, R; Dick, J

2016-11-01

Spiral laminar flow was suggested as potentially the predominant arterial blood flow pattern many years ago. Computational fluid dynamics and flow rig testing have suggested there are advantages to spiral laminar flow. The aim of this study was to identify whether spiral laminar is the predominant flow pattern in a cohort of volunteers. This study included 42 volunteers (mean age 66.8 years). Eleven arterial sites were examined, comprising bilateral examination of the common carotid artery, internal carotid artery, external carotid artery, common femoral artery, superficial femoral artery, and the infra renal aorta. The presence or absence of spiral laminar flow, the peak systolic velocity, and the rotational velocity were assessed by colour Duplex scanning. The incidence of spiral laminar flow ranged from 81% in the internal carotid artery to 90% in the common carotid artery and the infra renal aorta. Overall, in 58% of all right-sided arteries the rotation was clockwise and 42% anticlockwise. In all left-sided arteries these numbers were reversed. Analysis on the basis of volunteer rather than examination site showed that 41/42 (97%) had more sites with spiral laminar flow than without. Only one volunteer had more sites exhibiting non-spiral laminar flow. Spiral laminar flow was the predominant flow pattern in the study population. This observation raises questions and suggests a need for further studies concerning the form and function of the left ventricle, the geometry of the arterial system, and the function of the arterial wall. Crown Copyright © 2016. Published by Elsevier Ltd. All rights reserved.

Continuity vs. the Crowd-Tradeoffs Between Continuous and Intermittent Citizen Hydrology Streamflow Observations.

PubMed

Davids, Jeffrey C; van de Giesen, Nick; Rutten, Martine

2017-07-01

Hydrologic data has traditionally been collected with permanent installations of sophisticated and accurate but expensive monitoring equipment at limited numbers of sites. Consequently, observation frequency and costs are high, but spatial coverage of the data is limited. Citizen Hydrology can possibly overcome these challenges by leveraging easily scaled mobile technology and local residents to collect hydrologic data at many sites. However, understanding of how decreased observational frequency impacts the accuracy of key streamflow statistics such as minimum flow, maximum flow, and runoff is limited. To evaluate this impact, we randomly selected 50 active United States Geological Survey streamflow gauges in California. We used 7 years of historical 15-min flow data from 2008 to 2014 to develop minimum flow, maximum flow, and runoff values for each gauge. To mimic lower frequency Citizen Hydrology observations, we developed a bootstrap randomized subsampling with replacement procedure. We calculated the same statistics, and their respective distributions, from 50 subsample iterations with four different subsampling frequencies ranging from daily to monthly. Minimum flows were estimated within 10% for half of the subsample iterations at 39 (daily) and 23 (monthly) of the 50 sites. However, maximum flows were estimated within 10% at only 7 (daily) and 0 (monthly) sites. Runoff volumes were estimated within 10% for half of the iterations at 44 (daily) and 12 (monthly) sites. Watershed flashiness most strongly impacted accuracy of minimum flow, maximum flow, and runoff estimates from subsampled data. Depending on the questions being asked, lower frequency Citizen Hydrology observations can provide useful hydrologic information.

Streamflow and Erosion Response to Prolonged Intense Rainfall of November 1-2, 2000, Island of Hawaii, Hawaii

USGS Publications Warehouse

Fontaine, Richard A.; Hill, Barry R.

2002-01-01

A combination of several meteorologic and topographic factors produced extreme rainfall over the eastern part of the island of Hawaii on November 1-2, 2000. Storm rainfall was concentrated in two distinct areas, the Waiakea and Kapapala areas, where maximum rainfall totals of 32.47 and 38.97 inches were recorded. Resultant flooding caused damages in excess of 70 million dollars, among the highest totals associated with flooding in the State's history. Storm rainfall had recurrence intervals that ranged from 10 years or less for maximum 1-hour totals to 100 years or more for maximum 24-hour totals As part of this study, peak flow and/or erosion data were collected at 41 sites. Analyses of these data indicated that peak discharges of record occurred at 6 of 12 sites where historic data were available. Peak flows with estimated recurrence intervals from 50 to over 100 years were recorded at 4 of 11 sites. Peak flows were poorly correlated with total storm rainfall. Critical rainfall durations associated with peak flows ranged from 1 to 12 hours and were about 3 hours at most sites. Rainfall-runoff computations and field observations indicated that infiltration-excess overland flow alone was not sufficient to have caused the observed flood peaks and therefore saturation-excess overland flow and subsurface flow probably contributed to peak flows at most sites Most hillslope erosion associated with the storm took place along or near the Kaoiki Pali in the Kapapala area. Hillslope erosion was predominately caused by overland flow.

Assessing Hydrologic Impacts of Land Configuration Changes Using an Integrated Hydrologic Model at the Rocky Flats Environmental Technology Site, Colorado

NASA Astrophysics Data System (ADS)

Prucha, R. H.; Dayton, C. S.; Hawley, C. M.

2002-12-01

The Rocky Flats Environmental Technology Site (RFETS) in Golden, Colorado, a former Department of Energy nuclear weapons manufacturing facility, is currently undergoing closure. The natural semi-arid interaction between surface and subsurface flow at RFETS is complex and complicated by the industrial modifications to the flow system. Using a substantial site data set, a distributed parameter, fully-integrated hydrologic model was developed to assess the hydrologic impact of different hypothetical site closure configurations on the current flow system and to better understand the integrated hydrologic behavior of the system. An integrated model with this level of detail has not been previously developed in a semi-arid area, and a unique, but comprehensive, approach was required to calibrate and validate the model. Several hypothetical scenarios were developed to simulate hydrologic effects of modifying different aspects of the site. For example, some of the simulated modifications included regrading the current land surface, changing the existing surface channel network, removing subsurface trenches and gravity drain flow systems, installing a slurry wall and geotechnical cover, changing the current vegetative cover, and converting existing buildings and pavement to permeable soil areas. The integrated flow model was developed using a rigorous physically-based code so that realistic design parameters can simulate these changes. This code also permitted evaluation of changes to complex integrated hydrologic system responses that included channelized and overland flow, pond levels, unsaturated zone storage, groundwater heads and flow directions, and integrated water balances for key areas. Results generally show that channel flow offsite decreases substantially for different scenarios, while groundwater heads generally increase within the reconfigured industrial area most of which is then discharged as evapotranspiration. These changes have significant implications to site closure and operation.

Manipulating nanoparticle transport within blood flow through external forces: an exemplar of mechanics in nanomedicine

PubMed Central

Ye, Huilin; Shen, Zhiqiang; Wei, Mei; Li, Ying

2018-01-01

A large number of nanoparticles (NPs) have been raised for diverse biomedical applications and some of them have shown great potential in treatment and imaging of diseases. Design of NPs is essential for delivery efficacy due to a number of biophysical barriers, which prevents the circulation of NPs in vascular flow and their accumulation at tumour sites. The physiochemical properties of NPs, so-called ‘4S’ parameters, such as size, shape, stiffness and surface functionalization, play crucial roles in their life journey to be delivered to tumour sites. NPs can be modified in various ways to extend their blood circulation time and avoid their clearance by phagocytosis, and efficiently diffuse into tumour cells. However, it is difficult to overcome these barriers simultaneously by a simple combination of ‘4S’ parameters for NPs. At this moment, external triggerings are necessary to guide the movement of NPs, which include light, ultrasound, magnetic field, electrical field and chemical interaction. The delivery system can be constructed to be sensitive to these external stimuli which can reduce the non-specific toxicity and improve the efficacy of the drug-delivery system. From a mechanics point of view, we discuss how different forces play their roles in the margination of NPs in blood flow and tumour microvasculature. PMID:29662344

Manipulating nanoparticle transport within blood flow through external forces: an exemplar of mechanics in nanomedicine

NASA Astrophysics Data System (ADS)

Ye, Huilin; Shen, Zhiqiang; Yu, Le; Wei, Mei; Li, Ying

2018-03-01

A large number of nanoparticles (NPs) have been raised for diverse biomedical applications and some of them have shown great potential in treatment and imaging of diseases. Design of NPs is essential for delivery efficacy due to a number of biophysical barriers, which prevents the circulation of NPs in vascular flow and their accumulation at tumour sites. The physiochemical properties of NPs, so-called `4S' parameters, such as size, shape, stiffness and surface functionalization, play crucial roles in their life journey to be delivered to tumour sites. NPs can be modified in various ways to extend their blood circulation time and avoid their clearance by phagocytosis, and efficiently diffuse into tumour cells. However, it is difficult to overcome these barriers simultaneously by a simple combination of `4S' parameters for NPs. At this moment, external triggerings are necessary to guide the movement of NPs, which include light, ultrasound, magnetic field, electrical field and chemical interaction. The delivery system can be constructed to be sensitive to these external stimuli which can reduce the non-specific toxicity and improve the efficacy of the drug-delivery system. From a mechanics point of view, we discuss how different forces play their roles in the margination of NPs in blood flow and tumour microvasculature.

A high-performance dual-scale porous electrode for vanadium redox flow batteries

NASA Astrophysics Data System (ADS)

Zhou, X. L.; Zeng, Y. K.; Zhu, X. B.; Wei, L.; Zhao, T. S.

2016-09-01

In this work, we present a simple and cost-effective method to form a dual-scale porous electrode by KOH activation of the fibers of carbon papers. The large pores (∼10 μm), formed between carbon fibers, serve as the macroscopic pathways for high electrolyte flow rates, while the small pores (∼5 nm), formed on carbon fiber surfaces, act as active sites for rapid electrochemical reactions. It is shown that the Brunauer-Emmett-Teller specific surface area of the carbon paper is increased by a factor of 16 while maintaining the same hydraulic permeability as that of the original carbon paper electrode. We then apply the dual-scale electrode to a vanadium redox flow battery (VRFB) and demonstrate an energy efficiency ranging from 82% to 88% at current densities of 200-400 mA cm-2, which is record breaking as the highest performance of VRFB in the open literature.

Teaching Technical Competencies for Fluid Mechanics Research

NASA Astrophysics Data System (ADS)

Tagg, Randall

2014-11-01

We are developing an ``on demand'' framework for students to learn techniques used in fluid mechanics research. The site for this work is a university-grade laboratory situated next to Gateway High School in Aurora, Colorado. Undergraduate university students work with K-12 students on research and technical innovation projects. Both groups need customized training as their projects proceed. A modular approach allows particular competencies such as pump selection, construction of flow piping and channels, flow visualization, and specific flow measurement methods to be acquired through focused lessons. These lessons can be learned in either a stand-alone fashion or assembled into units for formal courses. A research example was a student project on diffusion of infectious material in micro-gravity in the event of an intestinal puncture wound. A curriculum example is a 9-week quarter of high-school instruction on instrumentation that uses small-scale water treatment systems as a case study.

Geothermal Resource/Reservoir Investigations Based on Heat Flow and Thermal Gradient Data for the United States

DOE Office of Scientific and Technical Information (OSTI.GOV)

D. D. Blackwell; K. W. Wisian; M. C. Richards

2000-04-01

Several activities related to geothermal resources in the western United States are described in this report. A database of geothermal site-specific thermal gradient and heat flow results from individual exploration wells in the western US has been assembled. Extensive temperature gradient and heat flow exploration data from the active exploration of the 1970's and 1980's were collected, compiled, and synthesized, emphasizing previously unavailable company data. Examples of the use and applications of the database are described. The database and results are available on the world wide web. In this report numerical models are used to establish basic qualitative relationships betweenmore » structure, heat input, and permeability distribution, and the resulting geothermal system. A series of steady state, two-dimensional numerical models evaluate the effect of permeability and structural variations on an idealized, generic Basin and Range geothermal system and the results are described.« less

Stochastic empirical loading and dilution model (SELDM) version 1.0.0

USGS Publications Warehouse

Granato, Gregory E.

2013-01-01

The Stochastic Empirical Loading and Dilution Model (SELDM) is designed to transform complex scientific data into meaningful information about the risk of adverse effects of runoff on receiving waters, the potential need for mitigation measures, and the potential effectiveness of such management measures for reducing these risks. The U.S. Geological Survey developed SELDM in cooperation with the Federal Highway Administration to help develop planning-level estimates of event mean concentrations, flows, and loads in stormwater from a site of interest and from an upstream basin. Planning-level estimates are defined as the results of analyses used to evaluate alternative management measures; planning-level estimates are recognized to include substantial uncertainties (commonly orders of magnitude). SELDM uses information about a highway site, the associated receiving-water basin, precipitation events, stormflow, water quality, and the performance of mitigation measures to produce a stochastic population of runoff-quality variables. SELDM provides input statistics for precipitation, prestorm flow, runoff coefficients, and concentrations of selected water-quality constituents from National datasets. Input statistics may be selected on the basis of the latitude, longitude, and physical characteristics of the site of interest and the upstream basin. The user also may derive and input statistics for each variable that are specific to a given site of interest or a given area. SELDM is a stochastic model because it uses Monte Carlo methods to produce the random combinations of input variable values needed to generate the stochastic population of values for each component variable. SELDM calculates the dilution of runoff in the receiving waters and the resulting downstream event mean concentrations and annual average lake concentrations. Results are ranked, and plotting positions are calculated, to indicate the level of risk of adverse effects caused by runoff concentrations, flows, and loads on receiving waters by storm and by year. Unlike deterministic hydrologic models, SELDM is not calibrated by changing values of input variables to match a historical record of values. Instead, input values for SELDM are based on site characteristics and representative statistics for each hydrologic variable. Thus, SELDM is an empirical model based on data and statistics rather than theoretical physiochemical equations. SELDM is a lumped parameter model because the highway site, the upstream basin, and the lake basin each are represented as a single homogeneous unit. Each of these source areas is represented by average basin properties, and results from SELDM are calculated as point estimates for the site of interest. Use of the lumped parameter approach facilitates rapid specification of model parameters to develop planning-level estimates with available data. The approach allows for parsimony in the required inputs to and outputs from the model and flexibility in the use of the model. For example, SELDM can be used to model runoff from various land covers or land uses by using the highway-site definition as long as representative water quality and impervious-fraction data are available.

PHAST Version 2-A Program for Simulating Groundwater Flow, Solute Transport, and Multicomponent Geochemical Reactions

USGS Publications Warehouse

Parkhurst, David L.; Kipp, Kenneth L.; Charlton, Scott R.

2010-01-01

The computer program PHAST (PHREEQC And HST3D) simulates multicomponent, reactive solute transport in three-dimensional saturated groundwater flow systems. PHAST is a versatile groundwater flow and solute-transport simulator with capabilities to model a wide range of equilibrium and kinetic geochemical reactions. The flow and transport calculations are based on a modified version of HST3D that is restricted to constant fluid density and constant temperature. The geochemical reactions are simulated with the geochemical model PHREEQC, which is embedded in PHAST. Major enhancements in PHAST Version 2 allow spatial data to be defined in a combination of map and grid coordinate systems, independent of a specific model grid (without node-by-node input). At run time, aquifer properties are interpolated from the spatial data to the model grid; regridding requires only redefinition of the grid without modification of the spatial data. PHAST is applicable to the study of natural and contaminated groundwater systems at a variety of scales ranging from laboratory experiments to local and regional field scales. PHAST can be used in studies of migration of nutrients, inorganic and organic contaminants, and radionuclides; in projects such as aquifer storage and recovery or engineered remediation; and in investigations of the natural rock/water interactions in aquifers. PHAST is not appropriate for unsaturated-zone flow, multiphase flow, or density-dependent flow. A variety of boundary conditions are available in PHAST to simulate flow and transport, including specified-head, flux (specified-flux), and leaky (head-dependent) conditions, as well as the special cases of rivers, drains, and wells. Chemical reactions in PHAST include (1) homogeneous equilibria using an ion-association or Pitzer specific interaction thermodynamic model; (2) heterogeneous equilibria between the aqueous solution and minerals, ion exchange sites, surface complexation sites, solid solutions, and gases; and (3) kinetic reactions with rates that are a function of solution composition. The aqueous model (elements, chemical reactions, and equilibrium constants), minerals, exchangers, surfaces, gases, kinetic reactants, and rate expressions may be defined or modified by the user. A number of options are available to save results of simulations to output files. The data may be saved in three formats: a format suitable for viewing with a text editor; a format suitable for exporting to spreadsheets and postprocessing programs; and in Hierarchical Data Format (HDF), which is a compressed binary format. Data in the HDF file can be visualized on Windows computers with the program Model Viewer and extracted with the utility program PHASTHDF; both programs are distributed with PHAST.

Channel Transmission Loss Studies During Ephemeral Flow Events: ER-5-3 Channel and Cambric Ditch, Nevada Test Site, Nye County, Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

J.J. Miller; S.A. Mizell; R.H. French

2005-10-01

Transmission losses along ephemeral channels are an important, yet poorly understood, aspect of rainfall-runoff prediction. Losses occur as flow infiltrates channel bed, banks, and floodplains. Estimating transmission losses in arid environments is difficult because of the variability of surficial geomorphic characteristics and infiltration capacities of soils and near-surface low-permeability geologic layers (e.g., calcrete). Transmission losses in ephemeral channels are nonlinear functions of discharge and time (Lane, 1972), and vary spatially along the channel reach and with soil antecedent moisture conditions (Sharma and Murthy, 1994). Rainfall-runoff models used to estimate peak discharge and runoff volume for flood hazard assessment are notmore » designed specifically for ephemeral channels, where transmission loss can be significant because of the available storage volume in channel soils. Accuracy of the flow routing and rainfall-runoff models is dependent on the transmission loss estimate. Transmission loss rate is the most uncertain parameter in flow routing through ephemeral channels. This research, sponsored by the U.S. Department of Energy, National Nuclear Security Administration (DOE/NNSA) and conducted at the Nevada Test Site (NTS), is designed to improve understanding of the impact of transmission loss on ephemeral flood modeling and compare various methodologies for predicting runoff from rainfall events. Various applications of this research to DOE projects include more site-specific accuracy in runoff prediction; possible reduction in size of flood mitigation structures at the NTS; and a better understanding of expected infiltration from runoff losses into landfill covers. Two channel transmission loss field experiments were performed on the NTS between 2001 and 2003: the first was conducted in the ER-5-3 channel (Miller et al., 2003), between March and June 2001, and the second was conducted in the Cambric Ditch (Mizell et al., 2005), between April and July 2003. Both studies used water discharged from unrelated drilling activities during well development and aquifer pump tests. Discharge measurements at several flumes located along the channels were used to directly measure transmission losses. Flume locations were chosen in relation to geomorphic surface types and ages, vegetative cover and types, subsurface indurated layers (calcrete), channel slopes, etc. Transmission losses were quantified using three different analysis methods. Method 1 uses Lane's Method (Lane, 1983) for estimating flood magnitude in ephemeral channels. Method 2 uses heat as a subsurface tracer for infiltration. Numerical modeling, using HYDRUS-2D (Simunek et al., 1999), a finite-element-based flow and transport code, was applied to estimate infiltration from soil temperature data. Method 3 uses hydraulic gradient and water content in a Darcy's Law approach (Freeze and Cherry, 1979) to calculate one-dimensional flow rates. Heat dissipation and water content data were collected for this analysis.« less

Freshwater flow from estuarine creeks into northeastern Florida Bay

USGS Publications Warehouse

Hittle, Clinton; Patino, Eduardo; Zucker, Mark A.

2001-01-01

Water-level, water-velocity, salinity, and temperature data were collected from selected estuarine creeks to compute freshwater flow into northeastern Florida Bay. Calibrated equations for determining mean velocity from acoustic velocity were obtained by developing velocity relations based on direct acoustic measurements, acoustic line velocity, and water level. Three formulas were necessary to describe flow patterns for all monitoring sites, with R2 (coefficient of determination) values ranging from 0.957 to 0.995. Cross-sectional area calculations were limited to the main channel of the creeks and did not include potential areas of overbank flow. Techniques also were used to estimate discharge at noninstrumented sites by establishing discharge relations to nearby instrumented sites. Results of the relation between flows at instrumented and noninstrumented sites varied with R2 values ranging from 0.865 to 0.99. West Highway Creek was used to estimate noninstrumented sites in Long Sound, and Mud Creek was used to estimate East Creek in Little Madeira Bay. Mean monthly flows were used to describe flow patterns and to calculate net flow along the northeastern coastline. Data used in the study were collected from October 1995 through September 1999, which includes the El Nino event of 1998. During this period, about 80 percent of the freshwater flowing into the bay occurred during the wet season (May-October). The mean freshwater discharge for all five instrumented sites during the wet season from 1996 to 1999 is 106 cubic feet per second. The El Nino event caused a substantial increase (654 percent) in mean flows during the dry season (November-April) at the instrumented sites, ranging from 8.5 cubic feet per second in 1996-97 to 55.6 cubic feet per second in 1997-98. Three main flow signatures were identified when comparing flows at all monitoring stations. The most significant was the magnitude of discharges at Trout Creek, which carries about 50 percent of the total measured freshwater entering northeastern Florida Bay. The mean monthly wet-season (May-October) flow at Trout Creek is about 340 cubic feet per second, compared to 55 cubic feet per second at West Highway Creek, 52 cubic feet per second at Taylor River, 49 cubic feet per second at Mud Creek, and 33 cubic feet per second at McCormick Creek. The other two flow signatures are the decline of freshwater discharge at McCormick Creek at the start of the El Nino event, and the absence of net-negative flows at West Highway Creek. The observed flow distribution within the study area, suggests that the overall flow direction of freshwater in the Everglades wetlands in the lower part of Taylor Slough may have a strong eastward flow component as water approaches the coastline. Data analysis also indicates that Trout Creek could potentially be used as a long-term monitoring station to estimate total freshwater flow into northeastern Florida Bay, provided that the remaining questions regarding flow patterns at McCormick Creek and the creeks in Long Sound are answered and that no major changes in flow characteristics occur in the future.

Reconnaissance of Surface-Water Quality and Possible Sources of Nutrients and Bacteria in the Turkey Creek Watershed, Northwest Oklahoma, 2002-2003

USGS Publications Warehouse

Becker, Carol J.

2004-01-01

The U.S. Geological Survey in cooperation with the Oklahoma Department of Environmental Quality and the U.S. Environmental Protection Agency investigated the distribution of surface-water quality and possible sources of nutrients and Escherichia coli bacteria to surface water in Turkey Creek, which flows about 70 miles through mostly rural agricultural areas in northwest Oklahoma. Results show that discharge on the main stem of Turkey Creek increased during low-flow conditions from an average of 5.4 cubic feet per second at the upper most site to 39 cubic feet per second at the lower most site in the watershed, indicating that Turkey Creek gains water from ground-water discharge. A portion of the increase in stream discharge may be from discharges of treated effluent from city sewage lagoons. However, the volume and frequency of discharges are unknown. Surface-water-quality samples show that specific conductance ranged from 1,180 to 1,740 microsiemens per centimeter at 25 degrees Celsius during low-flow conditions and in general, decreased downstream with site 1 or site 2 having the largest measurement and site 5 having the lowest. The pH values were slightly alkaline and ranged from 6.8 to 8.5 with a median of 8.2. Dissolved oxygen ranged from 9.3 to 15.9 milligrams per liter in samples collected in the months of November, February, and March and ranged from 5.3 to 13.9 milligrams per liter in samples collected in the months of June, July, and August. Surface-water-quality samples show that the median concentrations of nitrite plus nitrate as nitrogen (1.16 milligrams per liter) and total phosphorus (0.275 milligram per liter) are larger than the average median concentrations of 0.35 and 0.083 milligram per liter, respectively, calculated from water-quality sites in Oklahoma and part of Arkansas (excluding sites in the Ozark Highland and the Ouachita Mountains ecoregions) having similar stream orders and stream slopes. Concentrations of nitrite plus nitrate as nitrogen increased slightly in the winter months and decreased in the summer months, whereas, concentrations of total phosphorus and orthophosphate as phosphorus tended to increase during the summer months and decrease in the winter months. During high-flow conditions total phosphorus increased 7.7 times above the average concentration of 0.261 milligram per liter in low-flow samples. Orthophosphate concentrations increased 3.5 to 4 times during high-flow conditions. Almost all low-flow samples showed 15N values between 4 and 10 parts per thousand, above the range for atmospheric nitrogen and synthetic fertilizer and below the range for animal waste. These samples may represent a mixture of nitrate from these two sources and other sources enriched with 15N, such as soils and plants. Results of the bacterial source tracking indicated that the two source groups having the greatest number of ribopattern matches with surface-water isolates were the cattle group, 53 isolates or 23.5 percent, and the human group, 41 isolates or 18.2 percent. Fewer surface-water isolates matched the deer and horse groups, 8.0 percent and 3.5 percent, respectively. About 43 percent or 96 surface-water isolates were not matched to any source group.

Evolution of Heat Flow with Age on the Southern Flank of the Costa Rica Rift

NASA Astrophysics Data System (ADS)

Kolandaivelu, K. P.; Harris, R. N.; Lowell, R. P.; Wilson, D. J.; Hobbs, R. W.

2017-12-01

Analysis of 67 new conductive heat flow measurements at five sites ranging between ≈ 1.6 and 5.7 Ma on the southern flank of the Costa Rica Rift yields insight into factors that influence hydrothermal circulation in young oceanic crust. The heat flow measurements were collocated with a high-resolution multi-channel seismic line, extending from the ridge axis to ODP hole 504B. The mean conductive heat flow, qobs, 80 mWm-2, is ≈ 25% of the mean lithospheric heat flux, qth, predicted by half-space conductive cooling model. The ratio qobs/qth varies significantly from site to site indicating that advective heat loss may be influenced by the presence of high-angle, ridge-ward dipping normal faults, surface topography, and sediment thickness, which vary significantly along the profile. The 1.6 Ma heat flow site, which is located between two outcrops separated by 2 km and has thin sediment cover, yields qobs/qth » 0.08. The advective heat loss indicates a mass flux of 3 x 10-5 kgm-2s-1 and upper crustal permeabilities of 4 x 10-11 and 3 x 10-9 m2 for 1000 m and 100 m aquifer thicknesses, respectively. At the 2.6 Ma site with 75 m sediment cover, qobs/qth » 0.18 and heat flow is uniformly low, except for one high value near a fault. At the 3.5 Ma site, qobs/qth » 0.15. The heat flow deficit results from outcrop to outcrop flow, but subcritical cellular convection driven by local basement topography produces small heat flow highs and lows superimposed on the overall trend. At the 4.5 Ma site, qobs/qth » 0.06. The heat flow distribution indicates that discharge occurs through a large, thinly-sedimented topographical high, where estimated mass flux is 3 x 10-5 kgm-2s-1. At the oldest site of 5.7 Ma, qobs/qth » 1, but some heat flow values greater than qth occur near sparsely-sedimented basement outcrops, suggesting redistribution of heat by subsurface convection controlled by basement topography, similar to ODP Hole 504B. That qobs/qth » 1 at a much younger age than indicated by global data suggests that basement burial under a thick sediment cover inhibits advective heat loss through the crust. These data were collected as part of a major interdisciplinary NERC and NSF-funded collaboration entitled: Oceanographic and Seismic Characterization of heat dissipation and alteration by hydrothermal fluids at an Axial Ridge (OSCAR).

Relations of Water Quality to Streamflow, Season, and Land Use for Four Tributaries to the Toms River, Ocean County, New Jersey, 1994-99

USGS Publications Warehouse

Baker, Ronald J.; Hunchak-Kariouk, Kathryn

2006-01-01

The effects of nonpoint-source contamination on the water quality of four tributaries to the Toms River in Ocean County, New Jersey, have been investigated in a 5-year study by the U.S. Geological Survey (USGS), in cooperation with the New Jersey Department of Environmental Protection (NJDEP). The purpose of the study was to relate the extent of land development to loads of nutrients and other contaminants to these streams, and ultimately to Barnegat Bay. Volumetric streamflow (discharge) was measured at 6 monitoring sites during 37 stormflow and base-flow sampling events over a 5-year period (May 1994-September 1999). Concentrations and yields (area-normalized instantaneous load values) of nitrogen and phosphorus species, total suspended solids, and fecal coliform bacteria were quantified, and pH, dissolved oxygen, and stream stage were monitored during base-flow conditions and storms. Sufficient data were collected to allow for a statistical evaluation of differences in water quality among streams in subbasins with high, medium, and low levels of land development. Long Swamp Creek, in a highly developed subbasin (64.2 percent developed); Wrangle Brook, in a moderately developed subbasin (34.5 percent); Davenport Branch, in a slightly developed subbasin (22.8 percent); and Jakes Branch, in an undeveloped subbasin (0 percent) are the subbasins selected for this study. No point-source discharges are known to be present on these streams. Water samples were collected and analyzed by the NJDEP, and discharge measurements and data analysis were conducted by the USGS. Total nitrogen concentrations were lower in Davenport Branch than in Long Swamp Creek and Wrangle Brook during base flow and stormflow. Concentrations of total nitrogen and nitrate were highest in Wrangle Brook (as high as 3.0 mg/L and 1.6 mg/L, respectively) as a result of high concentrations of nitrate in samples collected during base flow; nitrate loading from ground-water discharge is much higher in Wrangle Brook than in any of the other streams, possibly as a result of an experimental wastewater-(secondary effluent) disposal site that was in operation during the 1980's. Ammonia concentrations were higher in samples from Long Swamp Creek than in those from the other two monitoring sites under all flow conditions, and ammonia yields were higher during stormflow than base flow at all monitoring sites. Concentrations and yields of fecal coliform bacteria and total suspended solids were higher during stormflow than during base flow at all monitoring sites. Concentrations and yields were significantly higher in Long Swamp Creek, a highly developed subbasin and Wrangle Brook, a moderately developed subbasin than in Davenport Branch, a slightly developed subbasin. Concentrations and yields of phosphate species, which also are strongly related to stormflow, were higher during stormflow in Long Swamp Creek than in the other subbasins. Base-flow separation techniques were used on hydrographs generated for storms to distinguish the fraction of discharge and constituent loading attributable to storm runoff (overland flow) from the fraction contributed by ground-water discharge. Precipitation records were used to determine the total annual volumes of ground-water discharge and runoff at each monitoring site. These volumes were used in conjunction with water-quality data to calculate total annual loads of each constituent at each monitoring site, separated into ground-water discharge and runoff fractions. It was determined that loads of ammonia, nitrate, organic nitrogen, total nitrogen, and orthophosphate in ground-water discharge were significantly higher in the moderately developed Wrangle Brook subbasin than in the highly developed Long Swamp Creek subbasin, and that no relation was apparent between the percent of land development and constituent loads from ground-water discharge. The loading of each constituent contributed by ground-water discharge is specific

Flow cytometry analysis of inflammatory cells isolated from the sciatic nerve and DRG after chronic constriction injury in mice.

PubMed

Liu, Liping; Yin, Yan; Li, Fei; Malhotra, Charvi; Cheng, Jianguo

2017-06-01

Cellular responses to nerve injury play a central role in the pathogenesis of neuropathic pain. However, the analysis of site specific cellular responses to nerve injury and neuropathic pain is limited to immunohistochemistry staining with numerous limitations. We proposed to apply flow cytometry to overcome some of the limitations and developed two protocols for isolation of cells from small specimens of the sciatic nerve and dorsal root ganglion (DRG) in mice. RESULTS AND COMPARASION WITH EXISTING: methods We found that both the non-enzymatic and enzymatic approaches were highly effective in harvesting a sufficient number of cells for flow cytometry analysis in normal and pathological conditions. The total number of cells in the injury site of the sciatic and its DRGs increased significantly 14days after chronic constriction injury (CCI) of the sciatic nerve, compared to sham surgery control or the contralateral control. The enzymatic approach yielded a significantly higher total number of cells and CD45 negative cells, suggesting that this approach allows for harvest of more resident cells, compared to the non-enzymatic method. The percentage of CD45 + /CD11b + cells was significantly increased in the sciatic nerve but not in the DRG. These results were consistent with both protocols. We thus offer two simple and effective protocols that allow for application of flow cytometry to the investigation of cellular and molecular mechanisms of neuropathic pain. Copyright © 2017 Elsevier B.V. All rights reserved.

Flow-Signature Analysis of Water Consumption in Nonresidential Building Water Networks Using High-Resolution and Medium-Resolution Smart Meter Data: Two Case Studies

NASA Astrophysics Data System (ADS)

Clifford, Eoghan; Mulligan, Sean; Comer, Joanne; Hannon, Louise

2018-01-01

Real-time monitoring of water consumption activities can be an effective mechanism to achieve efficient water network management. This approach, largely enabled by the advent of smart metering technologies, is gradually being practiced in domestic and industrial contexts. In particular, identifying water consumption habits from flow-signatures, i.e., the specific end-usage patterns, is being investigated as a means for conservation in both the residential and nonresidential context. However, the quality of meter data is bivariate (dependent on number of meters and data temporal resolution) and as a result, planning a smart metering scheme is relatively difficult with no generic design approach available. In this study, a comprehensive medium-resolution to high-resolution smart metering program was implemented at two nonresidential trial sites to evaluate the effect of spatial and temporal data aggregation. It was found that medium-resolution water meter data were capable of exposing regular, continuous, peak use, and diurnal patterns which reflect group wide end-usage characteristics. The high-resolution meter data permitted flow-signature at a personal end-use level. Through this unique opportunity to observe water usage characteristics via flow-signature patterns, newly defined hydraulic-based design coefficients determined from Poisson rectangular pulse were developed to intuitively aid in the process of pattern discovery with implications for automated activity recognition applications. A smart meter classification and siting index was introduced which categorizes meter resolution in terms of their suitable application.

Concentration Gradient Immunoassay I. A Rapid Immunoassay Based on Interdiffusion and Surface Binding in a Microchannel

PubMed Central

Nelson, Kjell E.; Foley, Jennifer O.; Yager, Paul

2008-01-01

We describe a novel microfluidic immunoassay method based on the diffusion of a small molecule analyte into a parallel-flowing stream containing cognate antibody. This interdiffusion results in a steady-state gradient of antibody binding site occupancy transverse to convective flow. In contrast to the diffusion immunoassay (Hatch et al. Nature Biotechnology,19:461−465 (2001)), this antibody occupancy gradient is interrogated by a sensor surface coated with a functional analog of the analyte. Antibodies with at least one unoccupied binding site may specifically bind to this functionalized surface, leading to a quantifiable change in surface coverage by the antibody. SPR imaging is used to probe the spatial distribution of antibody binding to the surface and, therefore, the outcome of the assay. We show that the pattern of antibody binding to the SPR sensing surface correlates with the concentration of a model analyte (phenytoin) in the sample stream. Using an inexpensive disposable microfluidic device, we demonstrate assays for phenytoin ranging in concentration from 75 to 1000 nM in phosphate buffer. At a total volumetric flow rate of 90 nL/sec, the assays are complete within 10 minutes. Inclusion of an additional flow stream on the side of the antibody stream opposite to that of the sample enables simultaneous calibration of the assay. This assay method is suitable for rapid quantitative detection of low-molecular weight analytes for point-of-care diagnostic instrumentation. PMID:17437332

Software-based on-site estimation of fractional flow reserve using standard coronary CT angiography data.

PubMed

De Geer, Jakob; Sandstedt, Mårten; Björkholm, Anders; Alfredsson, Joakim; Janzon, Magnus; Engvall, Jan; Persson, Anders

2016-10-01

The significance of a coronary stenosis can be determined by measuring the fractional flow reserve (FFR) during invasive coronary angiography. Recently, methods have been developed which claim to be able to estimate FFR using image data from standard coronary computed tomography angiography (CCTA) exams. To evaluate the accuracy of non-invasively computed fractional flow reserve (cFFR) from CCTA. A total of 23 vessels in 21 patients who had undergone both CCTA and invasive angiography with FFR measurement were evaluated using a cFFR software prototype. The cFFR results were compared to the invasively obtained FFR values. Correlation was calculated using Spearman's rank correlation, and agreement using intraclass correlation coefficient (ICC). Sensitivity, specificity, accuracy, negative predictive value, and positive predictive value for significant stenosis (defined as both FFR ≤0.80 and FFR ≤0.75) were calculated. The mean cFFR value for the whole group was 0.81 and the corresponding mean invFFR value was 0.84. The cFFR sensitivity for significant stenosis (FFR ≤0.80/0.75) on a per-lesion basis was 0.83/0.80, specificity was 0.76/0.89, and accuracy 0.78/0.87. The positive predictive value was 0.56/0.67 and the negative predictive value was 0.93/0.94. The Spearman rank correlation coefficient was ρ = 0.77 (P < 0.001) and ICC = 0.73 (P < 0.001). This particular CCTA-based cFFR software prototype allows for a rapid, non-invasive on-site evaluation of cFFR. The results are encouraging and cFFR may in the future be of help in the triage to invasive coronary angiography. © The Foundation Acta Radiologica 2015.

Simulation of the effects of rainfall and groundwater use on historical lake water levels, groundwater levels, and spring flows in central Florida

USGS Publications Warehouse

O'Reilly, Andrew M.; Roehl, Edwin A.; Conrads, Paul; Daamen, Ruby C.; Petkewich, Matthew D.

2014-01-01

The urbanization of central Florida has progressed substantially in recent decades, and the total population in Lake, Orange, Osceola, Polk, and Seminole Counties more than quadrupled from 1960 to 2010. The Floridan aquifer system is the primary source of water for potable, industrial, and agricultural purposes in central Florida. Despite increases in groundwater withdrawals to meet the demand of population growth, recharge derived by infiltration of rainfall in the well-drained karst terrain of central Florida is the largest component of the long-term water balance of the Floridan aquifer system. To complement existing physics-based groundwater flow models, artificial neural networks and other data-mining techniques were used to simulate historical lake water level, groundwater level, and spring flow at sites throughout the area. Historical data were examined using descriptive statistics, cluster analysis, and other exploratory analysis techniques to assess their suitability for more intensive data-mining analysis. Linear trend analyses of meteorological data collected by the National Oceanic and Atmospheric Administration at 21 sites indicate 67 percent of sites exhibited upward trends in air temperature over at least a 45-year period of record, whereas 76 percent exhibited downward trends in rainfall over at least a 95-year period of record. Likewise, linear trend analyses of hydrologic response data, which have varied periods of record ranging in length from 10 to 79 years, indicate that water levels in lakes (307 sites) were about evenly split between upward and downward trends, whereas water levels in 69 percent of wells (out of 455 sites) and flows in 68 percent of springs (out of 19 sites) exhibited downward trends. Total groundwater use in the study area increased from about 250 million gallons per day (Mgal/d) in 1958 to about 590 Mgal/d in 1980 and remained relatively stable from 1981 to 2008, with a minimum of 559 Mgal/d in 1994 and a maximum of 773 Mgal/d in 2000. The change in groundwater-use trend in the early 1980s and the following period of relatively slight trend is attributable to the concomitant effects of increasing public-supply withdrawals and decreasing use of water by the phosphate industry and agriculture. On the basis of available historical data and exploratory analyses, empirical lake water-level, groundwater-level, and spring-flow models were developed for 22 lakes, 23 wells, and 6 springs. Input time series consisting of various frequencies and frequency-band components of daily rainfall (1942 to 2008) and monthly total groundwater use (1957 to 2008) resulted in hybrid signal-decomposition artificial neural network models. The final models explained much of the variability in observed hydrologic data, with 43 of the 51 sites having coefficients of determination exceeding 0.6, and the models matched the magnitude of the observed data reasonably well, such that models for 32 of the 51 sites had root-mean-square errors less than 10 percent of the measured range of the data. The Central Florida Artificial Neural Network Decision Support System was developed to integrate historical databases and the 102 site-specific artificial neural network models, model controls, and model output into a spreadsheet application with a graphical user interface that allows the user to simulate scenarios of interest. Overall, the data-mining analyses indicate that the Floridan aquifer system in central Florida is a highly conductive, dynamic, open system that is strongly influenced by external forcing. The most important external forcing appears to be rainfall, which explains much of the multiyear cyclic variability and long-term downward trends observed in lake water levels, groundwater levels, and spring flows. For most sites, groundwater use explains less of the observed variability in water levels and flows than rainfall. Relative groundwater-use impacts are greater during droughts, however, and long-term trends in water levels and flows were identified that are consistent with historical groundwater-use patterns. The sensitivity of the hydrologic system to rainfall is expected, owing to the well-drained karst terrain and relatively thin confinement of the Floridan aquifer system in much of central Florida. These characteristics facilitate the relatively rapid transmission of infiltrating water from rainfall to the water table and contribute to downward leakage of water to the Floridan aquifer system. The areally distributed nature of rainfall, as opposed to the site-specific nature of groundwater use, and the generally high transmissivity and low storativity properties of the semiconfined Floridan aquifer system contribute to the prevalence of water-level and flow patterns that mimic rainfall patterns. In general, the data-mining analyses demonstrate that the hydrologic system in central Florida is affected by groundwater use differently during wet periods, when little or no system storage is available (high water levels), compared to dry periods, when there is excess system storage (low water levels). Thus, by driving the overall behavior of the system, rainfall indirectly influences the degree to which groundwater use will effect persistent trends in water levels and flows, with groundwater-use impacts more prevalent during periods of low water levels and spring flows caused by low rainfall and less prevalent during periods of high water levels and spring flows caused by high rainfall. Differences in the magnitudes of rainfall and groundwater use during wet and dry periods also are important determinants of hydrologic response. An important implication of the data-mining analyses is that rainfall variability at subannual to multidecadal timescales must be considered in combination with groundwater use to provide robust system-response predictions that enhance sustainable resource management in an open karst aquifer system. The data-driven approach was limited, however, by the confounding effects of correlation between rainfall and groundwater use, the quality and completeness of the historical databases, and the spatial variations in groundwater use. The data-mining analyses indicate that available historical data when used alone do not contain sufficient information to definitively quantify the related individual effects of rainfall and groundwater use on hydrologic response. The knowledge gained from data-driven modeling and the results from physics-based modeling, when compared and used in combination, can yield a more comprehensive assessment and a more robust understanding of the hydrologic system than either of the approaches used separately.

Use of temperature profiles beneath streams to determine rates of vertical ground-water flow and vertical hydraulic conductivity

USGS Publications Warehouse

Lapham, Wayne W.

1989-01-01

The use of temperature profiles beneath streams to determine rates of vertical ground-water flow and effective vertical hydraulic conductivity of sediments was evaluated at three field sites by use of a model that numerically solves the partial differential equation governing simultaneous vertical flow of fluid and heat in the Earth. The field sites are located in Hardwick and New Braintree, Mass., and in Dover, N.J. In New England, stream temperature varies from about 0 to 25 ?C (degrees Celsius) during the year. This stream-temperature fluctuation causes ground-water temperatures beneath streams to fluctuate by more than 0.1 ?C during a year to a depth of about 35 ft (feet) in fine-grained sediments and to a depth of about 50 ft in coarse-grained sediments, if ground-water velocity is 0 ft/d (foot per day). Upward flow decreases the depth affected by stream-temperature fluctuation, and downward flow increases the depth. At the site in Hardwick, Mass., ground-water flow was upward at a rate of less than 0.01 ft/d. The maximum effective vertical hydraulic conductivity of the sediments underlying this site is 0.1 ft/d. Ground-water velocities determined at three locations at the site in New Braintree, Mass., where ground water discharges naturally from the underlying aquifer to the Ware River, ranged from 0.10 to 0.20 ft/d upward. The effective vertical hydraulic conductivity of the sediments underlying this site ranged from 2.4 to 17.1 ft/d. Ground-water velocities determined at three locations at the Dover, N.J., site, where infiltration from the Rockaway River into the underlying sediments occurs because of pumping, were 1.5 ft/d downward. The effective vertical hydraulic conductivity of the sediments underlying this site ranged from 2.2 to 2.5 ft/d. Independent estimates of velocity at two of the three sites are in general agreement with the velocities determined using temperature profiles. The estimates of velocities and conductivities derived from the temperature measurements generally fall within the ranges of expected rates of flow in, and conductivities of, the sediments encountered at the test sites. Application of the method at the three test sites demonstrates the feasibility of using the method to determine the rate of ground-water flow between a stream and underlying sediments and the effective vertical hydraulic conductivity of the sediments.

Monitoring the impact of urban effluents on mineral contents of water and sediments of four sites of the river Ravi, Lahore.

PubMed

Shakir, Hafiz Abdullah; Qazi, Javed Iqbal; Chaudhry, Abdul Shakoor

2013-12-01

We assessed the impact of urban effluents on the concentrations of selected minerals (Cd, Cr, Cu, Fe, Pb, Zn, Mn, Ni, and Hg) in river Ravi before and after its passage through Lahore city. Water and sediment samples were collected from three lowly to highly polluted downstream sites (Shahdera (B), Sunder (C), and Balloki (D)) alongside the least polluted upstream site (Siphon (A)) during high and low river flow seasons. All the mineral concentrations increased up to site C but stabilized at site D, showing some recovery as compared to the third sampling site. The trend of mean mineral concentration was significantly higher during the low than the high flow season at all the sites. The mean Hg concentrations approached 0.14 and 0.12 mg/l at site A which increased (%) up to 107 and 25% at site B, 1,700 and 1,317% at site C, and 1,185 and 1,177% at site D during low and high river flows, respectively. All mineral concentrations were much higher in the sediment than the water samples. Mean Cd (917%), Cr (461%), Cu (300%), Fe (254%), Pb (179%), Zn (170%), Mn (723%), Ni (853%), and Hg (1,699%) concentrations were higher in riverbed sediments sampled from site C in comparison with the sample collected at site A during low flow season. The domestic and industrial discharges from Lahore city have created undesirable water qualities during the low river flow season. As majority of the mineral levels in the river Ravi were higher than the permissible and safe levels, this is of immediate concern for riverine fish consumers and the users of water for recreation and even irrigation. The use of these waters may pose health risks, and therefore, urgent intervention strategies are needed to minimize river water pollution and its impact on fish-consuming communities of this study area and beyond.

Water-quality and biologic data for the Blue River basin, Kansas City metropolitan area, Missouri and Kansas, October 2000 to October 2004

USGS Publications Warehouse

Wilkison, Donald H.; Armstrong, Daniel J.; Brown, Rebecca E.; Poulton, Barry C.; Cahill, Jeffrey D.; Zaugg, Steven D.

2005-01-01

This report presents water-quality and biologic data collected in the Blue River Basin, metropolitan Kansas City, Missouri and Kansas, from October 2000 to October 2004. Data were collected in cooperation with the city of Kansas City, Missouri, Water Services Department as part of an ongoing study designed to characterize long-term water-quality trends in the basin and to provide data to support a strategy for combined sewer overflow control. These data include values of physical properties, fecal indicator bacteria densities, suspended sediment, and concentrations of major ions, nutrients, trace elements, organic wastewater compounds, and pharmaceutical compounds in base-flow and stormflow stream samples and bottom sediments. Six surface-water sites in the basin were sampled 13 times during base-flow conditions and during a minimum of 7 storms. Benthic macroinvertebrate communities are described at 10 sites in the basin and 1 site outside the basin. Water-column and bottom-sediment data from impounded reaches of Brush Creek are provided. Continuous specific conductance, pH, water-quality temperature, turbidity, and dissolved oxygen data are provided for two streams-the Blue River and Brush Creek. Sampling, analytical, and quality assurance methods used in data collection during the study also are described in the report.

Walla Walla River Basin Fish Screen Evaluations; Nursery Bridge Fishway and Garden City/Lowden II Sites, 2003 Technical Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vucelick, J.; McMichael, G.

2003-11-01

Pacific Northwest National Laboratory evaluated the fish screens at the Nursery Bridge Fishway and the newly constructed Garden City/Lowden II site west of Walla Walla, Washington, in the Walla Walla River Basin during spring and summer 2003. Both fish screen facilities were examined to determine if they were being effectively operated and maintained to provide for safe fish passage. At the Nursery Bridge Fishway, the screens were evaluated specifically to determine whether the louvers that aid in controlling water flow from behind the screens could be adjusted so that the screens would meet fish protection criteria. Data were collected tomore » determine whether velocities in front of the screens and in the bypasses met current National Oceanic and Atmospheric Administration Fisheries (NOAA Fisheries) (formerly National Marine Fisheries Service (NMFS)) criteria to promote safe and timely fish passage before and after changing the louver settings. Rock weirs downstream of the dam were also evaluated to determine whether they might impede upstream migration of juvenile salmonids during low flow conditions. At the Garden City/Lowden II site, data were collected to establish a baseline for operating conditions and to determine whether any changes in the baffle settings were needed.« less

Deep Vadose Zone Flow and Transport Behavior at T-Tunnel Complex, Rainier Mesa, Nevada National Security Site

NASA Astrophysics Data System (ADS)

Parashar, R.; Reeves, D. M.

2010-12-01

Rainier Mesa, a tuffaceous plateau on the Nevada National Security Site, has been the location of numerous subsurface nuclear tests conducted in a series of tunnel complexes located approximately 450 m below the top of the mesa and 500 m above the regional groundwater flow system. The tunnels were constructed near the middle of an 800 m Tertiary sequence of faulted, low-permeability welded and non-welded bedded, vitric, and zeolitized tuff units. Water levels from wells in the vicinity of the T-tunnel complex indicate the presence of a perched saturation zone located approximately 100 m above the T-tunnel complex. This upper zone of saturation extends downward through most of the Tertiary sequence. The groundwater table is located at an elevation of 1300 m within a thrust sheet of Paleozoic carbonates, corresponding to the lower carbonate aquifer hydrostratigraphic unit (LCA3). The LCA3 is considered to be hydraulically connected to the Death Valley regional flow system. The objective of this project is to simulate complex downward patterns of fluid flow and radionuclide transport from the T-tunnel complex through the matrix and fault networks of the Tertiary tuff units to the water table. We developed an improved fracture characterization and mapping methodology consisting of displacement-length scaling relationships, simulation of realistic fault networks based on site-specific data, and the development of novel fracture network upscaling techniques that preserves fracture network flow and transport properties on coarse continuum grid. Development of upscaling method for fracture continua is based on the concepts of discrete fracture network modeling approach which performs better at honoring network connectivity and anisotropy of sparse networks in comparison to other established methods such as a tensor approach. Extensive flow simulations in the dual-continuum framework demonstrate that the characteristics of fault networks strongly influences the saturation profile and formation of perched zones, although they may not conduct a large amount of flow when compared to the matrix continua. The simulated results are found to be very sensitive to distribution of fracture aperture, density of the network, and spatial pattern of fracture clustering. The faults provide rapid pathways for radionuclide transport and the conceptual modeling of diffusional mass transfer between matrix and fracture continua plays a vital role in prediction of the overall behavior of the breakthrough curve.

Long-term Monitoring Program Optimization for Chlorinated Volatile Organic Compound Plume, Naval Air Station Brunswick, Maine

NASA Astrophysics Data System (ADS)

Calderone, G. M.

2006-12-01

A long-term monitoring program was initiated in 1995 at 6 sites at NAS Brunswick, including 3 National Priorities List (Superfund) sites. Primary contaminants of concern include chlorinated volatile organic compounds, including tetrachloroethane, trichloroethene, and vinyl chloride, in addition to metals. More than 80 submersible pumping systems were installed to facilitate sample collection utilizing the low-flow sampling technique. Long-term monitoring of the groundwater is conducted to assess the effectiveness of remedial measures, and monitor changes in contaminant concentrations in the Eastern Plume Operable Unit. Long-term monitoring program activities include quarterly groundwater sampling and analysis at more than 90 wells across 6 sites; surface water, sediment, seep, and leachate sampling and analysis at 3 sites; landfill gas monitoring; well maintenance; engineering inspections of landfill covers and other sites or evidence of stressed vegetation; water level gauging; and treatment plant sampling and analysis. Significant cost savings were achieved by optimizing the sampling network and reducing sampling frequency from quarterly to semi- annual or annual sampling. As part of an ongoing optimization effort, a geostatistical assessment of the Eastern Plume was conducted at the Naval Air Station, Brunswick, Maine. The geostatistical assessment used 40 monitoring points and analytical data collected over 3 years. For this geostatistical assessment, EA developed and utilized a database of analytical results generated during 3 years of long-term monitoring which was linked to a Geographic Information System to enhance data visualization capacity. The Geographic Information System included themes for groundwater volatile organic compound concentration, groundwater flow directions, shallow and deep wells, and immediate access to point-specific analytical results. This statistical analysis has been used by the site decision-maker and its conclusions supported a significant reduction in the Long-Term Monitoring Program.

A system architecture for a planetary rover

NASA Technical Reports Server (NTRS)

Smith, D. B.; Matijevic, J. R.

1989-01-01

Each planetary mission requires a complex space vehicle which integrates several functions to accomplish the mission and science objectives. A Mars Rover is one of these vehicles, and extends the normal spacecraft functionality with two additional functions: surface mobility and sample acquisition. All functions are assembled into a hierarchical and structured format to understand the complexities of interactions between functions during different mission times. It can graphically show data flow between functions, and most importantly, the necessary control flow to avoid unambiguous results. Diagrams are presented organizing the functions into a structured, block format where each block represents a major function at the system level. As such, there are six blocks representing telecomm, power, thermal, science, mobility and sampling under a supervisory block called Data Management/Executive. Each block is a simple collection of state machines arranged into a hierarchical order very close to the NASREM model for Telerobotics. Each layer within a block represents a level of control for a set of state machines that do the three primary interface functions: command, telemetry, and fault protection. This latter function is expanded to include automatic reactions to the environment as well as internal faults. Lastly, diagrams are presented that trace the system operations involved in moving from site to site after site selection. The diagrams clearly illustrate both the data and control flows. They also illustrate inter-block data transfers and a hierarchical approach to fault protection. This systems architecture can be used to determine functional requirements, interface specifications and be used as a mechanism for grouping subsystems (i.e., collecting groups of machines, or blocks consistent with good and testable implementations).

Water-Quality Characterization of Surface Water in the Onondaga Lake Basin, Onondaga County, New York, 2005-08

USGS Publications Warehouse

Coon, William F.; Hayhurst, Brett A.; Kappel, William M.; Eckhardt, David A.V.; Szabo, Carolyn O.

2009-01-01

Water-resources managers in Onondaga County, N.Y., have been faced with the challenge of improving the water-quality of Onondaga Lake. To assist in this endeavor, the U.S. Geological Survey undertook a 3-year basinwide study to assess the water quality of surface water in the Onondaga Lake Basin. The study quantified the relative contributions of nonpoint sources associated with the major land uses in the basin and also focused on known sources (streams with large sediment loads) and presumed sinks (Onondaga Reservoir and Otisco Lake) of sediment and nutrient loads, which previously had not been evaluated. Water samples were collected and analyzed for nutrients and suspended sediment at 26 surface-water sites and 4 springs in the 285-square-mile Onondaga Lake Basin from October 2005 through December 2008. More than 1,060 base-flow, stormflow, snowmelt, spring-water, and quality-assurance samples collected during the study were analyzed for ammonia, nitrite, nitrate-plus-nitrite, ammonia-plus-organic nitrogen, orthophosphate, phosphorus, and suspended sediment. The concentration of total suspended solids was measured in selected samples. Ninety-one additional samples were collected, including 80 samples from 4 county-operated sites, which were analyzed for suspended sediment or total suspended solids, and 8 precipitation and 3 snowpack samples, which were analyzed for nutrients. Specific conductance, salinity, dissolved oxygen, and water temperature were periodically measured in the field. The mean concentrations of selected constituents in base-flow, stormflow, and snowmelt samples were related to the land use or land cover that either dominated the basin or had a substantial effect on the water quality of the basin. Almost 40 percent of the Onondaga Lake Basin is forested, 30 percent is in agricultural uses, and almost 21 percent, including the city of Syracuse, is in developed uses. The data indicated expected relative differences among the land types for concentrations of nitrate, ammonia-plus-organic nitrogen, and orthophosphate. The data departed from the expected relations for concentrations of phosphorus and suspended sediment, and plausible explanations for these departures were posited. Snowmelt concentrations of dissolved constituents generally were greater and those of particulate constituents were less than concentrations of these constituents in storm runoff. Presumably, the snowpack acted as a short-term sink for dissolved constituents that had accumulated from atmospheric deposition, and streambed erosion and resuspension of previously deposited material, rather than land-surface erosion, were the primary sources of particulate constituents in snowmelt flows. Longitudinal assessments documented the changes in the median concentrations of constituents in base flows and event flows (combined stormflow and snowmelt) from upstream to downstream monitoring sites along the two major tributaries to Onondaga Lake - Onondaga Creek and Ninemile Creek. Median base-flow concentrations of ammonia and phosphorus and event concentrations of ammonia increased in the downstream direction in both streams. Whereas median event concentrations of other constituents in Onondaga Creek displayed no consistent trends, concentrations of ammonia-plus-organic nitrogen, orthophosphate, phosphorus, and suspended sediment in Ninemile Creek decreased from upstream to downstream sites. Springs discharging from the Onondaga and Bertie Limestone had measureable effects on water temperatures in the receiving streams and increased salinity and values of specific conductance in base flows. Loads of selected nutrients and suspended sediment transported in three tributaries of Otisco Lake were compared with loads from 1981-83. Loads of ammonia-plus-organic nitrogen and orthophosphate decreased from 1981-83 to 2005-08, but those of nitrate-plus-nitrite, phosphorus, and suspended sediment increased. The largest load increase was for suspende

Assessment of hydrology, water quality, and trace elements in selected placer-mined creeks in the birch creek watershed near central, Alaska, 2001-05

USGS Publications Warehouse

Kennedy, Ben W.; Langley, Dustin E.

2007-01-01

Executive Summary The U.S. Geological Survey, in cooperation with the Bureau of Land Management, completed an assessment of hydrology, water quality, and trace-element concentrations in streambed sediment of the upper Birch Creek watershed near Central, Alaska. The assessment covered one site on upper Birch Creek and paired sites, upstream and downstream from mined areas, on Frying Pan Creek and Harrison Creek. Stream-discharge and suspended-sediment concentration data collected at other selected mined and unmined sites helped characterize conditions in the upper Birch Creek watershed. The purpose of the project was to provide the Bureau of Land Management with baseline information to evaluate watershed water quality and plan reclamation efforts. Data collection began in September 2001 and ended in September 2005. There were substantial geomorphic disturbances in the stream channel and flood plain along several miles of Harrison Creek. Placer mining has physically altered the natural stream channel morphology and removed streamside vegetation. There has been little or no effort to re-contour waste rock piles. During high-flow events, the abandoned placer-mine areas on Harrison Creek will likely contribute large quantities of sediment downstream unless the mined areas are reclaimed. During 2004 and 2005, no substantial changes in nutrient or major-ion concentrations were detected in water samples collected upstream from mined areas compared with water samples collected downstream from mined areas on Frying Pan Creek and Harrison Creek that could not be attributed to natural variation. This also was true for dissolved oxygen, pH, and specific conductance-a measure of total dissolved solids. Sample sites downstream from mined areas on Harrison Creek and Frying Pan Creek had higher median suspended-sediment concentrations, by a few milligrams per liter, than respective upstream sites. However, it is difficult to attach much importance to the small downstream increase, less than 10 milligrams per liter, in median suspended-sediment concentration for either basin. During low-flow conditions in 2004 and 2005, previously mined areas investigated on Harrison Creek and on Frying Pan Creek did not contribute substantial suspended sediments to sample sites downstream from the mined areas. No substantial mining-related water- or sediment-quality problems were detected at any of the sites investigated in the upper Birch Creek watershed during low-flow conditions. Average annual streamflow and precipitation were near normal in 2002 and 2003. Drought conditions, extreme forest fire impact, and low annual streamflow set apart the 2004 and 2005 summer seasons. Daily mean streamflow for upper Birch Creek varied throughout the period of record-from maximums of about 1,000 cubic feet per second to minimums of about 20 cubic feet per second. Streamflow increased and decreased rapidly in response to rainfall and rapid snowmelt events because the steep slopes, thin soil cover, and permafrost areas in the watershed have little capacity to retain runoff. Median suspended-sediment concentrations for the 115 paired samples from Frying Pan Creek and 101 paired samples from Harrison Creek were less than the 20 milligrams per liter total maximum daily load. The total maximum daily load was set by the U.S. Environmental Protection Agency for the upper Birch Creek basin in 1996. Suspended-sediment paired-sample data were collected using automated samplers in 2004 and 2005, primarily during low-flow conditions. Suspended-sediment concentrations in grab samples from miscellaneous sites ranged from less than 1 milligram per liter during low-flow conditions to 1,386 milligrams per liter during a high-flow event on upper Birch Creek. Streambed-sediment samples were collected at six sites on Harrison Creek, two sites on Frying Pan Creek, and one site on upper Birch Creek. Trace-element concentrations of mercury, lead, and zinc in streambed sedimen

Restoration of the Apollo Heat Flow Experiments Metadata

NASA Technical Reports Server (NTRS)

Nagihara, S.; Stephens, M. K.; Taylor, P. T.; Williams, D. R.; Hills, H. K.; Nakamura, Y.

2015-01-01

Geothermal heat flow probes were deployed on the Apollo 15 and 17 missions as part of the Apollo Lunar Surface Experiments Package (ALSEP). At each landing site, the astronauts drilled 2 holes, 10-m apart, and installed a probe in each. The holes were 1- and 1.5-m deep at the Apollo 15 site and 2.5-m deep at the Apollo 17 sites. The probes monitored surface temperature and subsurface temperatures at different depths. At the Apollo 15 site, the monitoring continued from July 1971 to January 1977. At the Apollo 17 site, it did from December 1972 to September 1977. Based on the observations made through December 1974, Marcus Langseth, the principal investigator of the heat flow experiments (HFE), determined the thermal conductivity of the lunar regolith by mathematically modeling how the seasonal temperature fluctuation propagated down through the regolith. He also determined the temperature unaffected by diurnal and seasonal thermal waves of the regolith at different depths, which yielded the geothermal gradient. By multiplying the thermal gradient and the thermal conductivity, Langseth obtained the endogenic heat flow of the Moon as 21 mW/m(exp 2) at Site 15 and 16 mW/m(exp 2) at Site 17.

Effects of highway deicing chemicals on shallow unconsolidated aquifers in Ohio--final report

USGS Publications Warehouse

Kunze, Allison E.; Sroka, Bernard N.

2004-01-01

As a result of concerns about salt intrusion into drinking water aquifers, the effects of highway deicing chemicals on shallow aquifers were studied at eight locations in Ohio from 1988 through 2002. The study was done by the U.S. Geological Survey, in cooperation with the Ohio Department of Transportation and the Federal Highway Administration. Sites were selected along major undivided highways where drainage is by open ditches and ground-water flow is approximately perpendicular to the highway. Records of deicer application rates were kept, and apparent movement of deicing chemicals through shallow, unconsolidated aquifers was monitored by means of periodic measurements of specific conductance and concentrations of dissolved sodium, calcium, and chloride. The State routes monitored were the following: State Route (SR) 3 in Ashland County, SR 84 in Ashtabula County, SR 29 in Champaign County, SR 4 in Clark County, SR 2 in Lucas County, SR 104 in Pickaway County, SR 14 in Portage County, and SR 97 in Richland County. The study began in 1988 with background data collection, extensive literature review, and site selection. This process, including drilling of wells at numerous test sites and the eight selected sites, lasted 3 years. Routine groundwater sampling at 4- to 6-week intervals began in January 1991 and continued through September 1999. A multilevel, passive flow ground-water sampling device was constructed and used. Other conditions monitored on a regular basis included ground-water level (monitored continuously), specific conductance, air and soil temperature, precipitation,chloride concentration in soil samples, and deicing-chemical application times and rates. Evidence from water analysis, specific-conductance measurements, and surface-geophysical measurements indicates that three of the eight sites (Ashtabula County, Lucas County, and Portage County sites) were affected by direct application of deicing chemicals. Climatic data collected during the study show that cold weather, and therefore deicing-chemical application rates, varied from south to north across the State. As a consequence, only minor traces of dissolved chloride (mean, 2443 mg/L (milligrams per liter)) above background concentrations (mean, 1323 mg/L) were determined in ground-water samples from the southernmost sites (approximately 39?30' to 40? N latitudeChampaign County, Clark County, and Pickaway County). At the Ashland and Richland County sites (approximately 40?30' N latitude), dissolved-chloride concentrations increased above background concentrations only intermittently (mean background concentrations 441 mg/L, rising to a mean of 4056 mg/L in downgradient wells). At the northernmost sites (41? 30' to 42? N latitudeLucas County, Portage County, and Ashtabula County), deicing-chemical application was consistent throughout the winter, and downgradient dissolved-chloride concentrations (mean, 124345 mg/L) rarely returned to background concentrations (mean, 737 mg/L) throughout the study period. Other factors than application rate that may affect the movement of deicing chemicals through an aquifer were precipitation amounts, the types of subsurface materials, ground-water velocity and gradient, hydraulic conductivity, soil type, land use, and Ohio Department of Transportation deicing priority.

Method of draining water through a solid waste site without leaching

DOEpatents

Treat, Russell L.; Gee, Glendon W.; Whyatt, Greg A.

1993-01-01

The present invention is a method of preventing water from leaching solid waste sites by preventing atmospheric precipitation from contacting waste as the water flows through a solid waste site. The method comprises placing at least one drain hole through the solid waste site. The drain hole is seated to prevent waste material from entering the drain hole, and the solid waste site cover material is layered and graded to direct water to flow toward the drain hole and to soil beneath the waste site.

Method of draining water through a solid waste site without leaching

DOEpatents

Treat, R.L.; Gee, G.W.; Whyatt, G.A.

1993-02-02

The present invention is a method of preventing water from leaching solid waste sites by preventing atmospheric precipitation from contacting waste as the water flows through a solid waste site. The method comprises placing at least one drain hole through the solid waste site. The drain hole is seated to prevent waste material from entering the drain hole, and the solid waste site cover material is layered and graded to direct water to flow toward the drain hole and to soil beneath the waste site.

Effects of high salinity wastewater discharges on unionid mussels in the Allegheny River, Pennsylvania

USGS Publications Warehouse

Kathleen Patnode,; Hittle, Elizabeth A.; Robert Anderson,; Lora Zimmerman,; Fulton, John W.

2015-01-01

We examined the effect of high salinity wastewater (brine) from oil and natural gas drilling on freshwater mussels in the Allegheny River, Pennsylvania, during 2012. Mussel cages (N = 5 per site) were deployed at two sites upstream and four sites downstream of a brine treatment facility on the Allegheny River. Each cage contained 20 juvenile northern riffleshell mussels Epioblasma torulosa rangiana). Continuous specific conductance and temperature data were recorded by water quality probes deployed at each site. To measure the amount of mixing throughout the entire study area, specific conductance surveys were completed two times during low-flow conditions along transects from bank to bank that targeted upstream (reference) reaches, a municipal wastewater treatment plant discharge upstream of the brine-facility discharge, the brine facility, and downstream reaches. Specific conductance data indicated that high specific conductance water from the brine facility (4,000–12,000 µS/cm; mean 7,846) compared to the reference reach (103–188 µS/cm; mean 151) is carried along the left descending bank of the river and that dilution of the discharge via mixing does not occur until 0.5 mi (805 m) downstream. Juvenile northern riffleshell mussel survival was severely impaired within the high specific conductance zone (2 and 34% at and downstream of the brine facility, respectively) and at the municipal wastewater treatment plant (21%) compared to background (84%). We surveyed native mussels (family Unionidae) at 10 transects: 3 upstream, 3 within, and 4 downstream of the high specific conductance zone. Unionid mussel abundance and diversity were lower for all transects within and downstream of the high conductivity zone compared to upstream. The results of this study clearly demonstrate in situ toxicity to juvenile northern riffleshell mussels, a federally endangered species, and to the native unionid mussel assemblage located downstream of a brine discharge to the Allegheny River.

An isotopic and modelling study of flow paths and storage in Quaternary calcarenite, SW Australia: implications for speleothem paleoclimate records

NASA Astrophysics Data System (ADS)

Treble, Pauline C.; Bradley, Chris; Wood, Anne; Baker, Andy; Jex, Catherine N.; Fairchild, Ian J.; Gagan, Michael K.; Cowley, Joan; Azcurra, Cecilia

2013-03-01

We investigated the distinctive shallow sub-surface hydrology of the southwest Western Australia (SWWA) dune calcarenite using observed rainfall and rainfall δ18O; soil moisture, cave drip rate and dripwater δ18O over a six-year period: August 2005-March 2012. A lumped parameter hydrological model is developed to describe water fluxes and drip δ18O. Comparison of observed data and model output allow us to assess the critical non-climatic karst hydrological processes that modify the precipitation δ18O signal and discuss the implications for speleothem paleoclimate records from this cave and those with a similar karst setting. Our findings include evidence of multiple reservoirs, characterised by distinct δ18O values and recharge responses ('low' and 'high' flow sites). Dripwaters exhibit δ18O variations in wet versus dry years at low-flow sites receiving diffuse seepage from the epikarst with an attenuated isotopic composition that approximates mean rainfall. Recharge from high-magnitude rain events is stored in a secondary reservoir which is associated with high-flow dripwater that is 1‰ lower than our monitored low-flow sites (δ18O). One drip site is characterised by mixed-flow behaviour and exhibits a non-linear threshold response after the cessation of drainage from a secondary reservoir following a record dry year (2006). Additionally, our results yield a better understanding of the vadose zone hydrology and dripwater characteristics in Quaternary age dune limestones. We show that flow to our monitored sites is dominated by diffuse flow with inferred transit times of less than one year. Diffuse flow appears to follow vertical preferential paths through the limestone reflecting differences in permeability and deep recharge into the host rock.

Acoustic-televiewer and acoustic-waveform logs used to characterize deeply buried basalt flows, Hanford site, Benton County, Washington

USGS Publications Warehouse

Paillet, Frederick L.

1985-01-01

Acoustic-waveform and acoustic-televiewer logs were obtained for a 400-meter interval of deeply buried basalt flows in three boreholes, and over shorter intervals in two additional boreholes located on the U.S. Department of Energy 's Hanford site in Benton County, Washington. Borehole-wall breakouts were observed in the unaltered interiors of a large part of individual basalt flows; however, several of the flows in one of the five boreholes had almost no breakouts. The distribution of breakouts observed on the televiewer logs correlated closely with the incidence of core disking in some intervals, but the correlation was not always perfect, perhaps because of the differences in the specific fracture mechanisms involved. Borehole-wall breakouts were consistently located on the east and west sides of the boreholes. The orientation is consistent with previous estimates of the principal horizontal-stress field in south-central Washington, if breakouts are assumed to form along the azimuth of the least principal stress. The distribution of breakouts repeatedly indicated an interval of breakout-free rock at the top and bottom of flows. Because breakouts frequently terminate at major low-angle fractures, the data indicate that fracturing may have relieved some of the horizontal stresses near flow tops and bottoms. Unaltered and unfractured basalt appeared to have a uniform compressional velocity of 6.0 + or - 0.1 km/sec and a uniform shear velocity of 3.35 + or - 0.1 km/sec throughout flow interiors. Acoustics-waveform logs also indicated that borehole-wall breakouts did not affect acoustic propagation along the borehole; so fracturing associated with the formation of breakouts appeared to be confined to a thin annulus of stress concentration around the borehole. Televiewer logs obtained before and after hydraulic fracturing in these boreholes indicated the extent of induced fractures, and also indicated minor changes to pre-existing fractures that may have been inflated during fracture generation. (USGS)

Modeled hydrologic metrics show links between hydrology and the functional composition of stream assemblages.

PubMed

Patrick, Christopher J; Yuan, Lester L

2017-07-01

Flow alteration is widespread in streams, but current understanding of the effects of differences in flow characteristics on stream biological communities is incomplete. We tested hypotheses about the effect of variation in hydrology on stream communities by using generalized additive models to relate watershed information to the values of different flow metrics at gauged sites. Flow models accounted for 54-80% of the spatial variation in flow metric values among gauged sites. We then used these models to predict flow metrics in 842 ungauged stream sites in the mid-Atlantic United States that were sampled for fish, macroinvertebrates, and environmental covariates. Fish and macroinvertebrate assemblages were characterized in terms of a suite of metrics that quantified aspects of community composition, diversity, and functional traits that were expected to be associated with differences in flow characteristics. We related modeled flow metrics to biological metrics in a series of stressor-response models. Our analyses identified both drying and base flow instability as explaining 30-50% of the observed variability in fish and invertebrate community composition. Variations in community composition were related to variations in the prevalence of dispersal traits in invertebrates and trophic guilds in fish. The results demonstrate that we can use statistical models to predict hydrologic conditions at bioassessment sites, which, in turn, we can use to estimate relationships between flow conditions and biological characteristics. This analysis provides an approach to quantify the effects of spatial variation in flow metrics using readily available biomonitoring data. © 2017 by the Ecological Society of America.

Analyses of flood-flow frequency for selected gaging stations in South Dakota

USGS Publications Warehouse

Benson, R.D.; Hoffman, E.B.; Wipf, V.J.

1985-01-01

Analyses of flood flow frequency were made for 111 continuous-record gaging stations in South Dakota with 10 or more years of record. The analyses were developed using the log-Pearson Type III procedure recommended by the U.S. Water Resources Council. The procedure characterizes flood occurrence at a single site as a sequence of annual peak flows. The magnitudes of the annual peak flows are assumed to be independent random variables following a log-Pearson Type III probability distribution, which defines the probability that any single annual peak flow will exceed a specified discharge. By considering only annual peak flows, the flood-frequency analysis becomes the estimation of the log-Pearson annual-probability curve using the record of annual peak flows at the site. The recorded data are divided into two classes: systematic and historic. The systematic record includes all annual peak flows determined in the process of conducting a systematic gaging program at a site. In this program, the annual peak flow is determined for each and every year of the program. The systematic record is intended to constitute an unbiased and representative sample of the population of all possible annual peak flows at the site. In contrast to the systematic record, the historic record consists of annual peak flows that would not have been determined except for evidence indicating their unusual magnitude. Flood information acquired from historical sources almost invariably refers to floods of noteworthy, and hence extraordinary, size. Although historic records form a biased and unrepresentative sample, they can be used to supplement the systematic record. (Author 's abstract)

Development of a multiplex lateral flow strip test for foot-and-mouth disease virus detection using monoclonal antibodies.

PubMed

Yang, Ming; Caterer, Nigel R; Xu, Wanhong; Goolia, Melissa

2015-09-01

Foot-and-mouth disease (FMD) is one of the world's most highly contagious animal diseases with tremendous economic consequences. A rapid and specific test for FMD diagnosis at the site of a suspected outbreak is crucial for the implementation of control measures. This project developed a multiplex lateral flow immunochromatographic strip test (multiplex-LFI) for the rapid detection and serotyping of FMD viruses. The monoclonal antibodies (mAbs) against serotypes O, A, and Asia 1 were used as capture mAbs. The mAbs were conjugated with fluorescein, rhodamine or biotin for serotype O, A and Asia 1, respectively. The detection mAbs which consisted of a serotype-independent mAb in combination with one serotype A-specific mAb and one Asia 1-specific mAb, were each colloidal gold-conjugated. The strips used in this study contained one control line and three test lines, which corresponded to one of the three serotypes, O, A or Asia 1. The newly developed multiplex-LFI strip test specifically identified serotype O (n=46), A (n=45) and Asia 1 (n=17) in all tested field isolates. The sensitivity of this strip test was comparable to the double antibody sandwich ELISA for serotypes O and A, but lower than the ELISA for serotype Asia 1. The multiplex-LFI strip test identified all tissue suspensions from animals that were experimentally inoculated with serotypes O, A or Asia 1. FMD viruses were detected in 38% and 50% of the swab samples from the lesion areas of experimentally inoculated sheep for serotypes O and A, respectively. The capability of the multiplex-LFI strip tests to produce rapid results with high specificity for FMD viruses of multiple serotypes makes this test a valuable tool to detect FMD viruses at outbreak sites. Crown Copyright © 2015. Published by Elsevier B.V. All rights reserved.

Spatial analysis of Carbon-14 dynamics in a wetland ecosystem (Duke Swamp, Chalk River Laboratories, Canada).

PubMed

Yankovich, T L; King-Sharp, K J; Carr, J; Robertson, E; Killey, R W D; Beresford, N A; Wood, M D

2014-11-01

A detailed survey was conducted to quantify the spatial distribution of (14)C in Sphagnum moss and underlying soil collected in Duke Swamp. This wetland environment receives (14)C via groundwater pathways from a historic radioactive Waste Management Area (WMA) on Atomic Energy Canada Limited (AECL)'s Chalk River Laboratories (CRL) site. Trends in (14)C specific activities were evaluated with distance from the sampling location with the maximum (14)C specific activity (DSS-35), which was situated adjacent to the WMA and close to an area of groundwater discharge. Based on a spatial evaluation of the data, an east-to-west (14)C gradient was found, due to the influence of the WMA on (14)C specific activities in the swamp. In addition, it was possible to identify two groups of sites, each showing significant exponential declines with distance from the groundwater source area. One of the groups showed relatively more elevated (14)C specific activities at a given distance from source, likely due to their proximity to the WMA, the location of the sub-surface plume originating from the WMA, the presence of marsh and swamp habitat types, which facilitated (14)C transport to the atmosphere, and possibly, (14)C air dispersion patterns along the eastern edge of the swamp. The other group, which had lower (14)C specific activities at a given distance from the groundwater source area, included locations that were more distant from the WMA and the sub-surface plume, and contained fen habitat, which is known to act as barrier to groundwater flow. The findings suggest that proximity to source, groundwater flow patterns and habitat physical characteristics can play an important role in the dynamics of (14)C being carried by discharging groundwater into terrestrial and wetland environments. Copyright © 2014 Elsevier Ltd. All rights reserved.

On-road bicycle facilities and bicycle crashes in Iowa, 2007-2010.

PubMed

Hamann, Cara; Peek-Asa, Corinne

2013-07-01

An average of 611 deaths and over 47,000 bicyclists are injured in traffic-related crashes in the United States each year. Efforts to increase bicycle safety are needed to reduce and prevent injuries and fatalities, especially as trends indicate that ridership is increasing rapidly. The objective of this study was to evaluate the effect of bicycle-specific roadway facilities (e.g., signage and bicycle lanes) in reducing bicycle crashes. We conducted a case site-control site study of 147 bicycle crash-sites identified from the Iowa Department of Transportation crash database from 2007 to 2010 and 147 matched non-crash sites. Control sites were randomly selected from intersections matched to case sites on neighborhood (census block group) and road classification (arterial, feeder, collector, etc.). We examined crash risk by any on-road bicycle facility present and by facility type (pavement markings--bicycle lanes and shared lane arrows, bicycle-specific signage, and the combination of markings and signage), controlling for bicycle volume, motor vehicle volume, street width, sidewalks, and traffic controls. A total of 11.6% of case sites and 15.0% of controls had an on-road bicycle facility. Case intersections had higher bicycle volume (3.52 vs. 3.34 per 30 min) and motor vehicle volume (248.77 vs. 205.76 per 30 min) than controls. Our results are suggestive that the presence of an on-road bicycle facility decreases crash risk by as much as 60% with a bicycle lane or shared lane arrow (OR=0.40, 95% CI=0.09-1.82) and 38% with bicycle-specific signage (OR=0.62, 95% CI=0.15-2.58). Investments in bicycle-specific pavement markings and signage have been shown to be beneficial to traffic flow, and our results suggest that they may also reduce the number of bicycle-motor vehicle crashes and subsequent injuries and fatalities. As a relatively low-cost traffic feature, community considerations for further implementation of these facilities are justified. Copyright © 2012 Elsevier Ltd. All rights reserved.

A rapid lateral-flow immunoassay for phytosanitary detection of Erwinia amylovora and on-site fire blight diagnosis.

PubMed

Braun-Kiewnick, A; Altenbach, D; Oberhänsli, T; Bitterlin, W; Duffy, B

2011-10-01

Fire blight is an invasive disease caused by Erwinia amylovora that threatens pome fruit production globally. Effective implementation of phytosanitary control measures depends upon rapid, reliable pathogen detection and disease diagnosis. We developed a lateral-flow immunoassay specific for E. amylovora with a detection limit of log 5.7 CFU/ml, typical of pathogen concentrations in symptomatic plant material. The simple assay had comparable sensitivity to standard culture plating, serum agglutination and nested PCR when validated for application in a phytosanitary laboratory as a confirmatory test of cultured isolates and for first-line diagnosis of phytosanitary samples that represent the full range of commercial, ornamental and forestry host species. On-site validation in ring-trials with local plant inspectors demonstrated robust and reliable detection (compared to subsequent plating and PCR analysis). The simplicity, inspector acceptance and facilitation of expedited diagnosis (from 2 days for laboratory submitted samples to 15 min with the immunoassay), offers a valuable tool for improved phytosanitary control of fire blight. Copyright © 2011 Elsevier B.V. All rights reserved.

Quantum-Dot-Based Lateral Flow Immunoassay for Detection of Neonicotinoid Residues in Tea Leaves.

PubMed

Wang, Shuangjie; Liu, Ying; Jiao, Shasha; Zhao, Ying; Guo, Yirong; Wang, Mengcen; Zhu, Guonian

2017-11-22

Neonicotinoid insecticides are commonly used for pest control on tea plantations as a result of their broad-spectrum activity. However, neonicotinoid residues released from tea leaves into tea infusions pose a dietary risk to consumers. Therefore, a rapid, sensitive, and reliable on-site detection method for neonicotinoids is needed. We developed a quantum-dot-based fluorescent lateral flow immunochromatographic strip (LFICS) combined with a broad-specific antibody for detection of typical neonicotinoids (imidacloprid, imidaclothiz, and clothianidin), with sensitivities [50% inhibitory concentration (IC 50 )] of 0.104-0.33 ng/mL and visual detection limits of 0.5-1 ng/mL. The strip assay could be completed in less than 30 min. Using the LFICS to analyze spiked tea samples (green tea, black tea, and oolong tea), the average recovery of the three neonicotinoids ranged between 71 and 111%, with the coefficient of variation below 12%. The results from the LFICS tests for field samples were consistent with results from ultraperformance liquid chromatography-tandem mass spectrometry. The newly developed strip is a useful tool for the on-site detection of neonicotinoid residues in tea.

Site specific ligand substitution in cubane-type Mo3FeS(4)(4+) clusters: kinetics and mechanism of reaction and isolation of mixed ligand Cl/SPh complexes.

PubMed

Algarra, Andrés G; Basallote, Manuel G; Fernandez-Trujillo, M J; Llusar, Rosa; Pino-Chamorro, Jose A; Sorribes, Ivan; Vicent, Cristian

2010-04-21

The synthesis, crystal structure and solution characterization of the cubane-type [Mo(3)(FeCl)S(4)(dmpe)(3)Cl(3)] (1) (dmpe = 1,2-bis(dimethylphophane-ethane)) cluster are reported and the ligand substitution processes of chloride by thiophenolate investigated. The kinetics and the intimate mechanism of these substitutions reveal that compound 1 undergoes a number of Fe and Mo site specific ligand substitution reactions in acetonitrile solutions. In particular, PhS(-) coordination at the tetrahedral Fe site proceeds in a single resolved kinetic step whereas such substitutions at the Mo sites proceed more slowly. The effect of the presence of acids in the reaction media is also investigated and reveals that an acid excess hinders substitution reactions both at the Fe and Mo sites; however, an acid-promoted solvolysis of the Fe-Cl bonds is observed. Electrospray ionization (ESI) and tandem (ESI-MS/MS) mass spectrometry allow the identification of all the reaction intermediates proposed on the basis of stopped-flow measurements. The distinctive site specific reactivity made it possible to isolate two new clusters of the Mo(3)FeS(4)(4+) family featuring mixed chlorine/thiophenolate ligands, namely Mo(3)S(4)(FeSPh)(dmpe)(3)Cl(3) (2) and [Mo(3)S(4)(FeSPh)(dmpe)(3)(SPh)(3)] (3). A detailed computational study has also been carried out to understand the details of the mechanism of substitution at the M-Cl (M = Mo and Fe) bonds as well as the solvolysis at the Fe-Cl sites, with particular emphasis on the role of acids on the substitution process. The results of the calculations are in agreement with the experimental observations, thus justifying the non-existence of an accelerating effect of acids on the thiophenolate substitution reaction, which differs from previous proposals for the Fe(4)S(4) and MoFe(3)S(4) clusters and some related compounds.

Skin blood flow response in the rat model of wound healing: expression of vasoactive factors.

PubMed

Rendell, Marc S; Johnson, Mark L; Smith, Denae; Finney, David; Capp, Christopher; Lammers, Rebecca; Lancaster, Scott

2002-09-01

Although the microvascular blood flow response to wounding is predominantly vasodilation at skin sites with nutritive capillary perfusion (NUTR), there is a significant vasoconstrictive response at sites with high arteriovenous perfusion (AV). There may be a difference between NUTR and AV sites in the vasoactive factors which mediate the blood flow response to wounding. We measured the levels of mRNA expression of several potential mediators of the blood flow response to assess this possible difference. We measured skin blood flow at wounds placed at the back, a NUTR site, and at the paw, an AV site, in 12 Wistar Kyoto rats. Measurements were performed at baseline and then at 7 days post wounding. There was a significant increase in blood flow at back wound sites, with a rise from 4.1 +/- 0.3 ml/min/100 g to 9.8 +/- 1.9 ml/min/100 g. At the undisturbed wound perimeter, outside the zone of granulation tissue, flow rose to 7.3 +/- 1.1 ml/min/100 g. At the paw wound site, Day 0 flow was 8.8 +/- 0.8 ml/min/100 g. At 7 days, there was a significant decrease in flow at wound center to 5.5 +/- 0.5 ml/min/100 g. We measured the levels of inducible nitric oxide synthetase (iNOS), endothelin, endothelin receptor, vascular endothelial growth factor (VEGF), and keratinocyte growth factor (KGF) gene mRNAs using reverse transcriptase PCR. There was a 10-fold increase in NOS mRNA in granulation tissue of both wounds on Day 7. There was a lesser but still substantial increase in the wound perimeter tissue. Levels of endothelin mRNA in the wound and wound perimeter were significantly lower at the paw than at the back. At baseline, the level of endothelin receptor B (ETrB) mRNA was greater at the back than at the paw. Wounding resulted in a substantial increase in EtrB mRNA levels in granulation tissue, reaching the same level at the back and paw wounds. There was also a substantial rise in EtrB mRNA levels at the paw wound perimeter, so that there was a reversal of the baseline condition, with paw levels actually surpassing the levels at the back perimeter. Thus, we have found significant changes in mediators both of vasoconstriction and vasodilation affecting the healing wound. These changes affect NUTR and AV sites in different ways. These results demonstrate the complexity of the regulatory processes controlling microvascular blood flow in wound healing.

Recover Act. Verification of Geothermal Tracer Methods in Highly Constrained Field Experiments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Becker, Matthew W.

2014-05-16

The prediction of the geothermal system efficiency is strong linked to the character of the flow system that connects injector and producer wells. If water flow develops channels or “short circuiting” between injection and extraction wells thermal sweep is poor and much of the reservoir is left untapped. The purpose of this project was to understand how channelized flow develops in fracture geothermal reservoirs and how it can be measured in the field. We explored two methods of assessing channelization: hydraulic connectivity tests and tracer tests. These methods were tested at a field site using two verification methods: ground penetratingmore » radar (GPR) images of saline tracer and heat transfer measurements using distributed temperature sensing (DTS). The field site for these studies was the Altona Flat Fractured Rock Research Site located in northeastern New York State. Altona Flat Rock is an experimental site considered a geologic analog for some geothermal reservoirs given its low matrix porosity. Because soil overburden is thin, it provided unique access to saturated bedrock fractures and the ability image using GPR which does not effectively penetrate most soils. Five boreholes were drilled in a “five spot” pattern covering 100 m2 and hydraulically isolated in a single bedding plane fracture. This simple system allowed a complete characterization of the fracture. Nine small diameter boreholes were drilled from the surface to just above the fracture to allow the measurement of heat transfer between the fracture and the rock matrix. The focus of the hydraulic investigation was periodic hydraulic testing. In such tests, rather than pumping or injection in a well at a constant rate, flow is varied to produce an oscillating pressure signal. This pressure signal is sensed in other wells and the attenuation and phase lag between the source and receptor is an indication of hydraulic connection. We found that these tests were much more effective than constant pumping tests in identifying a poorly connected well. As a result, we were able to predict which well pairs would demonstrate channelized flow. The focus of the tracer investigation was multi-ionic tests. In multi-ionic tests several ionic tracers are injected simultaneously and the detected in a nearby pumping well. The time history of concentration, or breakthrough curve, will show a separation of the tracers. Anionic tracers travel with the water but cationic tracer undergo chemical exchange with cations on the surface of the rock. The degree of separation is indicative of the surface area exposed to the tracer. Consequently, flow channelization will tend to decrease the separation in the breakthrough. Estimation of specific surface area (the ration of fracture surface area to formation volume) is performed through matching the breakthrough curve with a transport model. We found that the tracer estimates of surface area were confirmed the prediction of channelized flow between well pairs produced by the periodic hydraulic tests. To confirm that the hydraulic and tracer tests were correctly predicting channelize flow, we imaged the flow field using surface GPR. Saline water was injected between the well pairs which produced a change in the amplitude and phase of the reflected radar signal. A map was produced of the migration of saline tracer from these tests which qualitatively confirmed the flow channelization predicted by the hydraulic and tracer tests. The resolution of the GPR was insufficient to quantitatively estimate swept surface area, however. Surface GPR is not applicable in typical geothermal fields because the penetration depths do not exceed 10’s of meters. Nevertheless, the method of using of phase to measure electrical conductivity and the assessment of antennae polarization represent a significant advancement in the field of surface GPR. The effect of flow character on fracture / rock thermal exchange was evaluated using heated water as a tracer. Water elevated 30 degrees C above the formation water was circulated between two wells pairs. One well pair had been identified in hydraulic and tracer testing as well connected and the other poorly connected. Temperature rise was measured in the adjacent rock matrix using coiled fiber optic cable interrogated for temperature using a DTS. This experimental design produced over 4000 temperature measurements every hour. We found that heat transfer between the fracture and the rock matrix was highly impacted by the character of the flow field. The strongly connected wells which had demonstrated flow channelization produced heat rise in a much more limited area than the more poorly connected wells. In addition, the heat increase followed the natural permeability of the fracture rather than the induced flow field. The primary findings of this work are (1) even in a single relatively planar fracture, the flow field can be highly heterogeneous and exhibit flow channeling, (2) channeling results from a combination of fracture permeability structure and the induced flow field, and (3) flow channeling leads to reduced heat transfer. Multi-ionic tracers effectively estimate relative surface area but an estimate of ion-exchange coefficients are necessary to provide an absolute measure of specific surface area. Periodic hydraulic tests also proved a relative indicator of connectivity but cannot prove an absolute measure of specific surface area.« less

Piezometer completion report for borehole cluster sites DC-19, DC-20, and DC-22

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jackson, R.L.; Diediker, L.D.; Ledgerwood, R.K.

1984-07-01

This report describes the design and installation of multi-level piezometers at borehole cluster sites DC-19, DC-20 and DC-22. The network of borehole cluster sites will provide facilities for multi-level water-level monitoring across the RRL for piezometer baseline monitoring and for large-scale hydraulic stress testing. These groundwater-monitoring facilities were installed between August 1983 and March 1984. Three series of piezometer nests (A-, C- and D-series) were installed in nine hydrogeologic units (monitoring horizons) within the Columbia River Basalt Group at each borehole cluster site. In addition to the piezometer facilities, a B-series pumping well was installed at borehole cluster sites DC-20more » and DC-22. The A-series piezometer nest monitors the basal Ringold sediments and the Rattlesnake Ridge interbed. The C-series piezometer nests monitors the six deepest horizons, which are in increasing depth, the Priest Rapids interflow, Sentinel Gap flow top, Ginkgo flow top, Rocky Coulee flow top, Cohassett flow top and Umtanum flow top. The D-series piezometer monitors the Mabton interbed. The B-series pumping well was completed in the Priest Rapids interflow. 21 refs., 6 figs., 6 tabs.« less

Tuning a Protein-Labeling Reaction to Achieve Highly Site Selective Lysine Conjugation.

PubMed

Pham, Grace H; Ou, Weijia; Bursulaya, Badry; DiDonato, Michael; Herath, Ananda; Jin, Yunho; Hao, Xueshi; Loren, Jon; Spraggon, Glen; Brock, Ansgar; Uno, Tetsuo; Geierstanger, Bernhard H; Cellitti, Susan E

2018-04-16

Activated esters are widely used to label proteins at lysine side chains and N termini. These reagents are useful for labeling virtually any protein, but robust reactivity toward primary amines generally precludes site-selective modification. In a unique case, fluorophenyl esters are shown to preferentially label human kappa antibodies at a single lysine (Lys188) within the light-chain constant domain. Neighboring residues His189 and Asp151 contribute to the accelerated rate of labeling at Lys188 relative to the ≈40 other lysine sites. Enriched Lys188 labeling can be enhanced from 50-70 % to >95 % by any of these approaches: lowering reaction temperature, applying flow chemistry, or mutagenesis of specific residues in the surrounding protein environment. Our results demonstrated that activated esters with fluoro-substituted aromatic leaving groups, including a fluoronaphthyl ester, can be generally useful reagents for site-selective lysine labeling of antibodies and other immunoglobulin-type proteins. © 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Low-flow characteristics and flow-duration statistics for selected USGS continuous-record streamgaging stations in North Carolina through 2012

USGS Publications Warehouse

Weaver, J. Curtis

2015-03-12

In 2013, the U.S. Geological Survey, in cooperation with the North Carolina Division of Water Resources, compiled updated low-flow characteristics and flow-duration statistics for selected continuous-record streamgages in North Carolina. The compilation of updated streamflow statistics provides regulators and planners with relevant hydrologic information reflective of the recent droughts, which can be used to better manage the quantity and quality of streams in North Carolina. Streamflow records available through the 2012 water year1 were used to determine the annual (based on climatic year2) and winter 7-day, 10-year (7Q10, W7Q10) low-flow discharges, the 30-day, 2-year (30Q2) low-flow discharge, and the 7-day, 2-year (7Q2) low-flow discharge. Consequently, streamflow records available through March 31, 2012 (or the 2011 climatic year) were used to determine the updated low-flow characteristics. Low-flow characteristics were published for 177 unregulated sites, 56 regulated sites, and 33 sites known or considered to be affected by varying degrees of minor regulation and (or) diversions upstream from the streamgages (266 sites total). The updated 7Q10 discharges were compared for 63 streamgages across North Carolina where (1) long-term streamflow record consisted of 30 or more climatic years of data available as of the 1998 climatic year, and (2) streamflows were not known to be regulated. The 7Q10 discharges did not change for 3 sites, whereas increases and decreases were noted at 5 and 55 sites, respectively. Positive changes (increases) ranged from 4.3 percent (site 362) to 34.1 percent (site 112) with a median of 13.2 percent. Negative percentage changes (decreases) ranged from –3.3 percent (site 514) to –80.0 percent (site 308) with a median of –22.2 percent. The median percentage change for all 63 streamgages was –18.4 percent. Streamflow statistics determined as a part of this compilation included minimum, mean, maximum, and flow-duration statistics of daily mean discharges for categorical periods. Flow-duration statistics based on the daily mean discharge records were compiled in this study for the 5th, 10th, 25th, 50th, 75th, 90th, and 95th percentiles. Flow-duration statistics were determined for each complete water year of record at a streamgage as well as the available period of record (or selected periods if flows were regulated) and selected seasonal, monthly, and calendar day periods. In addition to the streamflow statistics compiled for each of the water years, the number of days the daily mean discharge was at or below the 10th percentile was summed for each water year as well as the number of events during the water year when streamflow was consistently at or below the 10th percentile. All low-flow characteristics for the streamgages were added into the StreamStatsDB, which is a database accessible to users through the recently released USGS StreamStats application for North Carolina. The minimum, mean, maximum, and flow-duration statistics of daily mean discharges based on the available (or selected if regulated flows) period of record were updated in the North Carolina StreamStatsDB. However, for the selected seasonal, monthly, calendar day, and annual water year periods, tab-delimited American Standard Code for Information Interchange (ASCII) tables of the streamflow statistics are available online to users from a link provided in the StreamStats application. 1The annual period from October 1 through September 30, designated by the year in which the period ends. 2The annual period from April 1 through March 31, designated by the year in which the period begins.

Hydrogeology and simulation of groundwater flow at the Green Valley reclaimed coal refuse site near Terre Haute, Indiana

USGS Publications Warehouse

Bayless, E. Randall; Arihood, Leslie D.; Fowler, Kathleen K.

2011-01-01

The Green Valley reclaimed coal refuse site, near Terre Haute, Ind., was mined for coal from 1948 to 1963. Subsurface coal was cleaned and sorted at land surface, and waste material was deposited over the native glacial till. Approximately 2.7 million cubic yards of waste was deposited over 159 acres (92.3 hectares) in tailings ponds and gob piles. During 1993, the Indiana Department of Natural Resources, Division of Reclamation, improved the site by grading gob piles, filling tailings ponds, and covering the refuse with a layer of glacial drift. During 2008, the Division of Reclamation and U.S. Geological Survey initiated a cooperative investigation to characterize the hydrogeology of the site and construct a calibrated groundwater flow model that could be used to simulate the results of future remedial actions. In support of the modeling, a data-collection network was installed at the Green Valley site to measure weather components, geophysical properties, groundwater levels, and stream and seep flow. Results of the investigation indicate that (1) there is negligible overland flow from the site, (2) the prevailing groundwater-flow direction is from northeast to southwest, with a much smaller drainage to the northeast, (3) there is not a direct hydraulic connection between the refuse and West Little Sugar Creek, (4) about 24 percent of the groundwater recharge emerges through seeps, and water from the seeps evaporates or eventually flows to West Little Sugar Creek and the Green Valley Mine Pond, and (5) about 72 percent of groundwater recharge moves vertically downward from the coal refuse into the till and follows long, slow flow paths to eventual dischage points.

4 Living roofs in 3 locations: Does configuration affect runoff mitigation?

NASA Astrophysics Data System (ADS)

Fassman-Beck, Elizabeth; Voyde, Emily; Simcock, Robyn; Hong, Yit Sing

2013-05-01

Four extensive living roofs and three conventional (control) roofs in Auckland, New Zealand have been evaluated over periods of 8 months to over 2 yrs for stormwater runoff mitigation. Up to 56% cumulative retention was measured from living roofs with 50-150 mm depth substrates installed over synthetic drainage layers, and with >80% plant coverage. Variation in cumulative %-retention amongst sites is attributed to different durations of monitoring, rather than actual performance. At all sites, runoff rarely occurred at all from storms with less than 25 mm of precipitation, from the combined effects of substrates designed to maximize moisture storage and because >90% of individual events were less than 25 mm. Living roof runoff depth per event is predicted well by a 2nd order polynomial model (R2 = 0.81), again demonstrating that small storms are well managed. Peak flow per event from the living roofs was 62-90% less than a corresponding conventional roof's runoff. Seasonal retention performance decreased slightly in winter, but was nonetheless substantial, maintaining 66% retention at one site compared to 45-93% in spring-autumn at two sites. Peak flow mitigation did not vary seasonally. During a 4-month period of concurrent monitoring at all sites, varied substrate depth did not influence runoff depth (volume), %-retention, or %-peak flow mitigation compared to a control roof at the same site. The magnitude of peak flow was greater from garden shed-scale living roofs compared to the full-scale living roofs. Two design aspects that could be manipulated to increase peak flow mitigation include lengthening the flow path through the drainage layer to vertical gutters and use of flow-retarding drainage layer materials.

Dynamics of current-use pesticides in the agricultural model basin

NASA Astrophysics Data System (ADS)

Perez, Debora; Okada, Elena; Menone, Mirta; Aparicio, Virginia; Costa, Jose Luis

2017-04-01

The southeast of the Pampas plains is a zone with intensive agricultural activities; this zone is highly irrigated by wetlands, rivers and many streams. The stream flow dynamics are strongly related to the regional humidity, mainly given by runoff water and phreatic surface level, and can change dramatically during storm events. In this sense, it is important to study the fluctuations in the loads and mass of current-use pesticide (CUPs) to examine the influence of hydrologic and seasonal variability on the response of pesticide levels. The objective of this work was to determine the maximum loads reached of ∑CUPs and mass of CUPs associated with the flow dynamic in surface waters of "El Crespo" stream. "El Crespo" stream is only influenced by farming activities, with intensive crop systems upstream (US) and extensive livestock production downstream (DS). It is an optimal site for pesticide monitoring studies since there are no urban or industrial inputs into the system. Water samples were collected monthly from October 2014 to October 2015 in the UP and DN sites using 1 L polypropylene bottles and stored at -20°C until analysis. The samples were analyzed using liquid chromatography coupled to a tandem mass spectrometer (UPLC-MS/MS). The stream flow was measured during the sampling times in both sites, covering low base-flow and high base-flow periods. The most frequently detected residues (>40%) were glyphosate and its metabolite AMPA, atrazine, acetochlor, metolachlor, 2,4-D, metsulfuron methyl, fluorocloridone, imidacloprid, tebuconazole and epoxiconazole. The mean concentrations of ∑CUPs during the sampling period were 1.62µg/L and 1.66µg/L in UP site and DN site, respectively. The highest levels of ∑CUPs were 4.03 µg/L in UP site during spring 2014 and 2.53 µg/L in DN site during winter 2014. The mass of ∑CUPs showed a direct relation between low base flow and high base flow periods. During high base flow during spring 2014, the stream discharge showed peak of 6.16 mt3/s and 6.77 mt3/s, in UP and DN site, respectively; where the total loads of ∑CUPs were 3.7 µg/L and 2.88 µg/L and the associated mass were 22.74 and 19.54 µg/s, in UP and DN site, respectively. During low base flow the discharge were lower than 1 mt3/s and the total loads of ∑CUPs were variable between 1-3 µg/L, but the mass never were higher than 3 µg/s. The intensive rain during the spring 2014, were the mainly factor that influence the stream flow and pesticide dynamics in the model basin

Concentrations of organic contaminants detected during managed flow conditions, San Joaquin River and Old River, California, 2001

USGS Publications Warehouse

Orlando, James L.; Kuivila, Kathryn

2005-01-01

Concentrations of organic contaminants were determined in water samples collected at six surface-water sites located along the San Joaquin and Old Rivers during April through June 2001. Water samples were collected, coincident with salmon smolt caging studies conducted by researchers from the Bodega Marine Laboratory at the University of California at Davis to characterize exposure of the salmon smolt to organic contaminants. Sampling occurred prior to, during, and following the implementation of managed streamflow conditions on the San Joaquin and Old Rivers as part of the Vernalis Adaptive Management Plan. Thirteen pesticides were detected in water samples collected during this study, and at least five pesticides were detected in each sample. The total number of pesticide detections varied little between river systems and between sites, but the maximum concentrations of most pesticides occurred in San Joaquin River samples. The total number of pesticides detected varied little over the three time periods. However, during the period of managed streamflow, the fewest number of pesticides were detected at their absolute maximum concentration. Nine wastewater compounds were detected during this study. Suspended-sediment concentrations were similar for the San Joaquin and Old Rivers except during the period of managed streamflow conditions, when suspended-sediment concentration was higher at sites on the San Joaquin River than at sites on the Old River. Values for water parameters (pH, specific conductance, and hardness) were lowest during the period of managed flows.

Personalized design and virtual evaluation of physician-modified stent grafts for juxta-renal abdominal aortic aneurysms

NASA Astrophysics Data System (ADS)

Sanathkhani, Soroosh; Shroff, Sanjeev G.; Menon, Prahlad G.

2017-02-01

Endovascular aneurysm repair (EVAR) of juxtarenal aortic aneurysms (JAA) is particularly challenging owing to the requirement of suprarenal EVAR graft fixation, which has been associated with significant declines in long term renal function. Therefore, the ability to design fenestrated EVAR grafts on a personalized basis in order to ensure visceral and renal perfusion, is highly desirable. The objectives of this study are: a) To demonstrate novel 3D geometric methods to virtually design and deploy EVAR grafts into a virtually designed JAA, by applying a custom surface mesh deformation tool to a patient-specific descending aortic model reconstructed from computed tomographic (CT) images; and b) To virtually evaluate patient-specific renal flow and wall stresses in these patient-specific virtually EVAR geometries, using computational fluid dynamics (CFD). The presented framework may provide the modern cardiovascular surgeon the ability to leverage non-invasive, pre-operative imaging equipment to personalize and guide EVAR therapeutic strategy. Our CFD studies revealed that virtual EVAR grafting of a patient-specific JAA, with optimal fenestration sites and renal stenting, led to a 179.67±15.95% and 1051.43±18.34% improvement in right and left renal flow rates, respectively, when compared with the baseline patient-specific aortic geometry with renal stenoses, whereas a right and left renal flow improved by 36.44±2.24% and 885.93±12.41%, respectively, relative to the equivalently modeled JAA with renal stenoses, considering averages across the three simulated inflow rate cases. The proposed framework have utility to iteratively optimize suprarenal EVAR fixation length and achieve normal renal wall shear stresses and streamlined juxtarenal hemodynamics.

Basalt models for the Mars penetrator mission: Geology of the Amboy Lava Field, California

NASA Technical Reports Server (NTRS)

Greeley, R.; Bunch, T. E.

1976-01-01

Amboy lava field (San Bernardino County, California) is a Holocene basalt flow selected as a test site for potential Mars Penetrators. A discussion is presented of (1) the general relations of basalt flow features and textures to styles of eruptions on earth, (2) the types of basalt flows likely to be encountered on Mars and the rationale for selection of the Amboy lava field as a test site, (3) the general geology of the Amboy lava field, and (4) detailed descriptions of the target sites at Amboy lava field.

Subsurface phosphorus transport through a no-till field in the semi arid Palouse region

NASA Astrophysics Data System (ADS)

Norby, J. C.; Brooks, E. S.; Strawn, D. G.

2017-12-01

Excess application of fertilizers containing nitrogen and phosphorus for farming use has led to ongoing water quality issues in the United States. When these nutrients leave agronomic systems, and enter water bodies in large quantities, algal bloom and eutrophication can occur. Extensive studies focusing on phosphorus as a pollutant from agronomic systems have been conducted in the many regions of the United States; however, there has been a lack of studies completed in the semiarid Palouse region of eastern Washington and western Idaho. The goal of this research study was to better understand how no-till farm management has altered soil P temporally and the current availability for off-site transport of P throughout an artificially drained catchment at the Cook Agronomy Farm in Pullman, WA. We also attempted to determine the processes responsible for subsurface flow of phosphorus, specifically through preferential flow pathways. Dissolved reactive P (DRP)concentrations of subsurface drainage from a artificial drain exceeded TMDL threshold concentrations during numerous seasonal high flow events over the two-year study time frame. Soil analyses show a highly variable distribution of water-extractable P across the sub-catchment area and initial results suggest a translocation of P species deeper into the soil profile after implementing no-till practices in 1998. We hypothesized that a greater network of macropores from lack of soil disturbance allow for preferential flow of nutrient-laden water deeper into the subsurface and to the artificial drain system. Simulated flow experiments on soil cores from the study site showed large-scale macropore development, extreme variability in soil conductivity, and high P adsorption potential for the soils, suggesting a disconnect between P movement through macropore soil and subsurface drainage water rich in DRP at the artificial drain line outlet.

The operation and maintenance of a crest-stage gaging station

USGS Publications Warehouse

Friday, John

1965-01-01

Rigid datum controls must be maintained at the gage site throughout the period of record. Physical changes of the site resulting from flood flows or manmade alterations must be evaluated. If a drainage structure such as a culvert is part of the site features, free-flow conditions must be maintained or obstructions carefully documented.

Subsurface Flow and Moisture Dynamics in Response to Swash Motions: Effects of Beach Hydraulic Conductivity and Capillarity

NASA Astrophysics Data System (ADS)

Geng, Xiaolong; Heiss, James W.; Michael, Holly A.; Boufadel, Michel C.

2017-12-01

A combined field and numerical study was conducted to investigate dynamics of subsurface flow and moisture response to waves in the swash zone of a sandy beach located on Cape Henlopen, DE. A density-dependent variably saturated flow model MARUN was used to simulate subsurface flow beneath the swash zone. Values of hydraulic conductivity (K) and characteristic pore size (α, a capillary fringe property) were varied to evaluate their effects on subsurface flow and moisture dynamics in response to swash motions in beach aquifers. The site-specific modeling results were validated against spatiotemporal measurements of moisture and pore pressure in the beach. Sensitivity analyses indicated that the hydraulic conductivity and capillary fringe thickness of the beach greatly influenced groundwater flow pathways and associated transit times in the swash zone. A higher value of K enhanced swash-induced seawater infiltration into the beach, thereby resulting in a faster expansion of a wedge of high moisture content induced by swash cycles, and a flatter water table mound beneath the swash zone. In contrast, a thicker capillary fringe retained higher moisture content near the beach surface, and thus, significantly reduced the available pore space for infiltration of seawater. This attenuated wave effects on pore water flow in the unsaturated zone of the beach. Also, a thicker capillary fringe enhanced horizontal flow driven by the larger-scale hydraulic gradient caused by tides.

Role of alveolar topology on acinar flows and convective mixing.

PubMed

Hofemeier, Philipp; Sznitman, Josué

2014-06-01

Due to experimental challenges, computational simulations are often sought to quantify inhaled aerosol transport in the pulmonary acinus. Commonly, these are performed using generic alveolar topologies, including spheres, toroids, and polyhedra, to mimic the complex acinar morphology. Yet, local acinar flows and ensuing particle transport are anticipated to be influenced by the specific morphological structures. We have assessed a range of acinar models under self-similar breathing conditions with respect to alveolar flow patterns, convective flow mixing, and deposition of fine particles (1.3 μm diameter). By tracking passive tracers over cumulative breathing cycles, we find that irreversible flow mixing correlates with the location and strength of the recirculating vortex inside the cavity. Such effects are strongest in proximal acinar generations where the ratio of alveolar to ductal flow rates is low and interalveolar disparities are most apparent. Our results for multi-alveolated acinar ducts highlight that fine 1 μm inhaled particles subject to alveolar flows are sensitive to the alveolar topology, underlining interalveolar disparities in particle deposition patterns. Despite the simplicity of the acinar models investigated, our findings suggest that alveolar topologies influence more significantly local flow patterns and deposition sites of fine particles for upper generations emphasizing the importance of the selected acinar model. In distal acinar generations, however, the alveolar geometry primarily needs to mimic the space-filling alveolar arrangement dictated by lung morphology.

Subsurface imaging of an abandoned solid waste landfill site in Norman, Oklahoma

USGS Publications Warehouse

Zume, J.T.; Tarhule, A.; Christenson, S.

2006-01-01

Leachate plume emanating from an old unlined municipal landfill site near the city of Norman, Oklahoma, is discharging into the underlying alluvial aquifer. Subsurface imaging techniques, electrical resistivity tomography and electrical conductivity (EC) logging, were used on the site to detect and map the position of the leachate plume. Anomalous EC zones, delineated with the two methods, correlated with the occurrence of the plume detected by water chemistry analyses from multilevel monitoring wells. Specific conductance, a potential indicator of leachate contamination, ranged from 1861 to 7710 ??S/cm in contaminated zones and from 465 to 2180 ??S/cm in uncontaminated ground water. Results are in agreement with those from earlier studies that the leachate plume emerges from the landfill along preferential pathways. Additionally, there are indications that the leading edge of the plume has migrated, at least, 200 m away from the landfill in the direction of ground water flow. ?? 2006 National Ground Water Association.

Quality assurance: recommended guidelines for safe heating by capacitive-type heating technique to treat patients with metallic implants.

PubMed

Kato, Hirokazu; Kondo, Motoharu; Imada, Hajime; Kuroda, Masahiro; Kamimura, Yoshitsugu; Saito, Kazuyuki; Kuroda, Kagayaki; Ito, Koichi; Takahashi, Hideaki; Matsuki, Hidetoshi

2013-05-01

This article is a redissemination of the previous Japanese Quality Assurance Guide guidelines. Specific absorption rate and temperature distribution were investigated with respect to various aspects including metallic implant size and shape, insertion site, insertion direction, blood flow and heating power, and simulated results were compared with adverse reactions of patients treated by radio frequency capacitive-type heating. Recommended guidelines for safe heating methods for patients with metallic implants are presented based on our findings.

Preliminary design of a solar central receiver for a site-specific repowering application (Saguaro Power Plant). Volume IV. Appendixes. Final report, October 1982-September 1983

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weber, E.R.

1983-09-01

The appendixes for the Saguaro Power Plant includes the following: receiver configuration selection report; cooperating modes and transitions; failure modes analysis; control system analysis; computer codes and simulation models; procurement package scope descriptions; responsibility matrix; solar system flow diagram component purpose list; thermal storage component and system test plans; solar steam generator tube-to-tubesheet weld analysis; pipeline listing; management control schedule; and system list and definitions.

Recognizing critical mine spoil health characteristics to design ...

EPA Pesticide Factsheets

Biochar can be used as an amendment to remediate metal-contaminated mine spoils for improved site phytostabilization. For successful phytostabilization to occur, biochar amendments must improve mine spoil health with respect to plant rooting plus uptake of water and nutrients. An inappropriate biochar may negatively impact plant growth conditions resulting in poor plant establishment and growth. Matching the appropriate biochar for each mine site requires reconnaissance of spoil chemical and physical conditions and then identifying which properties need rectified to promote plant growth. A rectification hierarchy needs to be established with the primary limiting factor being addressed first, then successive limitations addressed simultaneously or thereafter. We posit that spoils at each site will have a unique chemical, physical, and biological signature that will affect plant growth. For example, some spoils may be extremely acidic, possess phytotoxic concentrations of heavy metals, or have physical conditions that limits water storage and root penetration. Quantifying these and other conditions beforehand allows for the production of designer biochar with specific characteristics tailored for specific plant growth deficiencies within each spoil. Additionally, we recommend the use of proximally located, undisturbed soils to establish spoil remediation targets. In our work, we have developed a decision-tree flow-chart that identifies salient chemical,

Covalent modification of pericardial patches for sustained rapamycin delivery inhibits venous neointimal hyperplasia

PubMed Central

Bai, Hualong; Lee, Jung Seok; Chen, Elizabeth; Wang, Mo; Xing, Ying; Fahmy, Tarek M.; Dardik, Alan

2017-01-01

Prosthetic grafts and patches are commonly used in cardiovascular surgery, however neointimal hyperplasia remains a significant concern, especially under low flow conditions. We hypothesized that delivery of rapamycin from nanoparticles (NP) covalently attached to patches allows sustained site-specific delivery of therapeutic agents targeted to inhibit localized neointimal hyperplasia. NP were covalently linked to pericardial patches using EDC/NHS chemistry and could deliver at least 360 ng rapamycin per patch without detectable rapamycin in serum; nanoparticles were detectable in the liver, kidney and spleen but no other sites within 24 hours. In a rat venous patch angioplasty model, control patches developed robust neointimal hyperplasia on the patch luminal surface characterized by Eph-B4-positive endothelium and underlying SMC and infiltrating cells such as macrophages and leukocytes. Patches delivering rapamycin developed less neointimal hyperplasia, less smooth muscle cell proliferation, and had fewer infiltrating cells but retained endothelialization. NP covalently linked to pericardial patches are a novel composite delivery system that allows sustained site-specific delivery of therapeutics; NP delivering rapamycin inhibit patch neointimal hyperplasia. NP linked to patches may represent a next generation of tissue engineered cardiovascular implants. PMID:28071663

Covalent modification of pericardial patches for sustained rapamycin delivery inhibits venous neointimal hyperplasia

NASA Astrophysics Data System (ADS)

Bai, Hualong; Lee, Jung Seok; Chen, Elizabeth; Wang, Mo; Xing, Ying; Fahmy, Tarek M.; Dardik, Alan

2017-01-01

Prosthetic grafts and patches are commonly used in cardiovascular surgery, however neointimal hyperplasia remains a significant concern, especially under low flow conditions. We hypothesized that delivery of rapamycin from nanoparticles (NP) covalently attached to patches allows sustained site-specific delivery of therapeutic agents targeted to inhibit localized neointimal hyperplasia. NP were covalently linked to pericardial patches using EDC/NHS chemistry and could deliver at least 360 ng rapamycin per patch without detectable rapamycin in serum; nanoparticles were detectable in the liver, kidney and spleen but no other sites within 24 hours. In a rat venous patch angioplasty model, control patches developed robust neointimal hyperplasia on the patch luminal surface characterized by Eph-B4-positive endothelium and underlying SMC and infiltrating cells such as macrophages and leukocytes. Patches delivering rapamycin developed less neointimal hyperplasia, less smooth muscle cell proliferation, and had fewer infiltrating cells but retained endothelialization. NP covalently linked to pericardial patches are a novel composite delivery system that allows sustained site-specific delivery of therapeutics; NP delivering rapamycin inhibit patch neointimal hyperplasia. NP linked to patches may represent a next generation of tissue engineered cardiovascular implants.

Relation of water quality to land use in the drainage basins of four tributaries to the Toms River, New Jersey, 1994-95

USGS Publications Warehouse

Hunchak-Kariouk, Kathryn

1999-01-01

The influence of land use on the water quality of four tributaries to the Toms River, which drains nearly one-half of the Barnegat Bay wateshed, was studied during the initial phase of a multiyear investigation. Water samples were collected from and streamflows were measured in Long Swamp Creek, Wrangel Brook, Davenport Branch, and Jakes Creek during periods of base flow and stormflow in the growing and nongrowing seasons during May 1994 to October 1995. The drainage areas upstream from the seven measurement sites were characterized as highly developed, moderately developed, slightly developed, or undeveloped. Concentrations were determined and area-normalized instantaneous loads (yields) were estimated for total nitrogen, ammonia, nitrate, organic nitrogen, hydrolyzable phosphorus plus orthosphosphorus, orthophosphorus, total suspended solids, and fecal-coliform bacteria in the water samples. Specific conductance, pH, temperature, and dissolved oxygen were measured. Yields of total nitrogen, nitrate, and organic nitrogen at sites on Wrangel Brook, which drains moderately developed areas, were either larger than or similar to yields at the site on Long Swamp Creek, which drains a highly developed area. The magnitude of these yields probably was not related directly to the intensity of land development, but more likely was influenced by the type of development, the amount of base flow, and historical land use in the basin. The large concentrations of total nitrogen and nitrate in base flow in Wrangel Brook could have resulted from fertilizers that were applied to high-maintenance lawns and from agricultural runoff that has remained in the ground water since the 1950's and eventually was discharged to streams. Yields of ammonia appear to be partly related to the intensity of land development and storm runoff. Yields of ammonia at the site on Long Swamp Creek (a highly developed area) were either larger than or similar to yields at sites on Wrangel Brook (moderately developed areas). Yields were smallest at the site on Davenport Branch, which drains a slightly developed area. Yields of hydrolyzable phosphorus plus orthophosphorus and yields of orthophosphorus appear to be related to the intensity of development. Concentrations of hydrolyzable phosphorus plus orthophosphorus were greater in Long Swamp Creek (highly developed areas) than in Wrangel Brook (moderately developed areas). Concentrations of orthophosphorus were largest in Wrangel Brook (moderately developed) and Long Swamp Creek (highly developed). Total suspended solids and bacteria were somewhat related to intensity of development. Yields of total suspended solids were greater at sites downstream from highly and moderately developed areas than from slightly developed areas. Yields of bacteria were strongly related to streamflow and season. Specific conductance appears to be related to streamflow. pH probably was related to intensity of land development; pH was greater (more basic) in streams draining highly developed areas than in those draining other areas. Concentrations of dissolved oxygen were affected more by water temperature than by intensity of development or streamflow.

Low-flow study for southwest Ohio streams

USGS Publications Warehouse

Webber, Earl E.; Mayo, Ronald I.

1971-01-01

Low-flow discharges at 60 sites on streams in the Little Miami River, Mill Creek, Great Miami River and Wabash River basins are presented in this report. The average annual minimum flows in cubic feet per second (cfs) for a 7-day period of 10-year frequency and a 1-day period of 30-year frequency are computed for each of the 60 sites.

Evaluation of Streamflow, Water Quality, and Permitted and Nonpermitted Loads and Yields in the Raritan River Basin, New Jersey, Water Years 1991-98

USGS Publications Warehouse

Reiser, Robert G.

2003-01-01

Seventeen water-quality constituents were analyzed in samples collected from 21 surface-water sampling sites in the Raritan River Basin during water years 1991-97. Loads were computed for seven constituents. Thirteen constituents have associated instream water-quality standards that are used as reference levels when evaluating the data. Nine of the 13 constituents did not meet water-quality reference levels in all samples at all sites. The constituents that most commonly failed to meet the water-quality reference levels in the 801 samples analyzed were total phosphorus (greater than 0.1 mg/L (milligrams per liter) in 32 percent of samples), fecal coliform bacteria (greater than 400 counts/100 milliliters in 29 percent), hardness (less than 50 mg/L in 21 percent), pH (greater than 8.5 or less than 6.5 in 17 percent), and water temperature in designated trout waters (greater than 20 degrees Celsius in 12 percent of samples). Concentrations of chloride, total dissolved solids, nitrate plus nitrite, and sulfate did not exceed water-quality reference levels in any sample. Results from previous studies on pesticides and volatile organic compounds in streamwater during 1996-98, and organic compounds and trace elements in sediments during 1976-93, were summarized for this study. Concentrations of pesticides in some samples exceeded the relevant standards. Water-quality data varied significantly as season and streamflow changed. Concentrations or values of 12 constituents were significantly higher in the growing season than in the nongrowing season at 1 to 21 sites, and concentrations of 6 constituents were significantly higher in the nongrowing season at 1 to 21 sites. Concentrations or values of seven constituents decreased significantly with increased streamflow, indicating a more significant contribution from base flow or permitted sources than from runoff. Concentrations or values of four constituents increased with increased flow, indicating a more significant contribution from runoff than from base flow or permitted sources. Phosphorus concentrations increased with flow at two sites with no point sources and decreased with flow at five sites with four or more permitted point sources. Concentrations of five constituents did not vary significantly with changes in streamflow at any of the sites. Concentrations of constituents differed significantly between sites. The sites with the most desirable values for the most constituents were Mulhockaway Creek, Spruce Run, Millstone River at Manalapan, Manalapan Brook, and Lamington River at Pottersville. The sites with the least desirable values for the most constituents were Millstone River at Blackwells Mills, Matchaponix Brook, Raritan River at Bound Brook, Neshanic River, and Millstone River at Grovers Mill. The total instream loads of seven constituents - total ammonia plus organic nitrogen (TKN), biochemical oxygen demand (BOD), total dissolved solids (TDS), nitrate plus nitrite (NO3+NO2), total organic carbon (TOC), total phosphorus, and total suspended solids (TSS) - were analyzed at low, median, and high flows. The quantities of total instream load that originated from facilities with permits issued by the New Jersey Department of Environmental Protection to discharge effluent to streams (permitted sources) and from other sources (nonpermitted sources) were estimated for each sampling site. TOC and TSS loads primarily were contributed by nonpermitted sources at all flows. BOD and TDS loads primarily were contributed by nonpermitted sources at median and high flows. At low flow, permitted sources contributed more than one-third of the TDS load at 10 sites and more than one-third of the BOD load at 3 sites. Permitted sources contributed more than one-third of the total phosphorus load at 15 and 14 sites at low and median flows, respectively. Permitted sources accounted for more than one-third of total instream load of NO3+NO2 at low- and median-flow conditions at nearly

Techniques for Estimating the Magnitude and Frequency of Peak Flows on Small Streams in Minnesota Based on Data through Water Year 2005

USGS Publications Warehouse

Lorenz, David L.; Sanocki, Chris A.; Kocian, Matthew J.

2010-01-01

Knowledge of the peak flow of floods of a given recurrence interval is essential for regulation and planning of water resources and for design of bridges, culverts, and dams along Minnesota's rivers and streams. Statistical techniques are needed to estimate peak flow at ungaged sites because long-term streamflow records are available at relatively few places. Because of the need to have up-to-date peak-flow frequency information in order to estimate peak flows at ungaged sites, the U.S. Geological Survey (USGS) conducted a peak-flow frequency study in cooperation with the Minnesota Department of Transportation and the Minnesota Pollution Control Agency. Estimates of peak-flow magnitudes for 1.5-, 2-, 5-, 10-, 25-, 50-, 100-, and 500-year recurrence intervals are presented for 330 streamflow-gaging stations in Minnesota and adjacent areas in Iowa and South Dakota based on data through water year 2005. The peak-flow frequency information was subsequently used in regression analyses to develop equations relating peak flows for selected recurrence intervals to various basin and climatic characteristics. Two statistically derived techniques-regional regression equation and region of influence regression-can be used to estimate peak flow on ungaged streams smaller than 3,000 square miles in Minnesota. Regional regression equations were developed for selected recurrence intervals in each of six regions in Minnesota: A (northwestern), B (north central and east central), C (northeastern), D (west central and south central), E (southwestern), and F (southeastern). The regression equations can be used to estimate peak flows at ungaged sites. The region of influence regression technique dynamically selects streamflow-gaging stations with characteristics similar to a site of interest. Thus, the region of influence regression technique allows use of a potentially unique set of gaging stations for estimating peak flow at each site of interest. Two methods of selecting streamflow-gaging stations, similarity and proximity, can be used for the region of influence regression technique. The regional regression equation technique is the preferred technique as an estimate of peak flow in all six regions for ungaged sites. The region of influence regression technique is not appropriate for regions C, E, and F because the interrelations of some characteristics of those regions do not agree with the interrelations throughout the rest of the State. Both the similarity and proximity methods for the region of influence technique can be used in the other regions (A, B, and D) to provide additional estimates of peak flow. The peak-flow-frequency estimates and basin characteristics for selected streamflow-gaging stations and regional peak-flow regression equations are included in this report.

How and why is aquatic quality changing at Nahanni National Park Reserve, NWT, Canada?

PubMed

Halliwell, Douglas R; Catto, Steve

2003-01-01

Nahanni National Park Reserve is located at southwestern NWT-Yukon border. One of the first UNESCO World Heritage sites, Nahanni lies within Taiga Cordillera and Taiga Shield Ecozones. Base and precious metal mining occurred upstream of Nahanni prior to park establishment. Nahanni waters, sediments, fish, and caribou have naturally elevated metals levels. Baseline water, sediment and fish tissue quality data were collected and analyzed throughout Nahanni during 1988-91 and 1992-97. These two programs characterized how aquatic quality variables are naturally varying in space and time, affected by geology, stream flow, seasonality, and extreme meteorological and geological events. Possible anthropogenic causes of aquatic quality change were examined. Measured values were compared to existing Guidelines and site-specific objectives were established.

Municipal wastewater sludge as a sustainable bioresource in the United States

DOE PAGES

Seiple, Timothy E.; Coleman, André M.; Skaggs, Richard L.

2017-04-20

Within the United States and Puerto Rico, publicly owned treatment works (POTWs) process 130.5 Gl/d (34.5 Bgal/d) of wastewater, producing sludge as a waste product. Emerging technologies offer novel waste-to-energy pathways through whole sludge conversion into biofuels. Assessing the feasibility, scalability and tradeoffs of various energy conversion pathways is difficult in the absence of highly spatially resolved estimates of sludge production. In this study, average wastewater solids concentrations and removal rates, and site specific daily average influent flow are used to estimate site specific annual sludge production on a dry weight basis for >15,000 POTWs. Current beneficial uses, regional productionmore » hotspots and feedstock aggregation potential are also assessed. Analyses indicate 1) POTWs capture 12.56 Tg/y (13.84 MT/y) of dry solids; 2) 50% are not beneficially utilized, and 3) POTWs can support seven regions that aggregate >910 Mg/d (1000 T/d) of sludge within a travel distance of 100 km.« less

Cell fate regulation governed by a repurposed bacterial histidine kinase

DOE PAGES

Childers, W. Seth; Xu, Qingping; Mann, Thomas H.; ...

2014-10-28

One of the simplest organisms to divide asymmetrically is the bacterium Caulobacter crescentus. The DivL pseudo-histidine kinase, positioned at one cell pole, regulates cell-fate by controlling the activation of the global transcription factor CtrA via an interaction with the response regulator (RR) DivK. DivL uniquely contains a tyrosine at the histidine phosphorylation site, and can achieve these regulatory functions in vivo without kinase activity. Determination of the DivL crystal structure and biochemical analysis of wild-type and site-specific DivL mutants revealed that the DivL PAS domains regulate binding specificity for DivK~P over DivK, which is modulated by an allosteric intramolecular interactionmore » between adjacent domains. We discovered that DivL's catalytic domains have been repurposed as a phosphospecific RR input sensor, thereby reversing the flow of information observed in conventional histidine kinase (HK)-RR systems and coupling a complex network of signaling proteins for cell-fate regulation.« less

Analysis of ground-water flow in the Madison aquifer using fluorescent dyes injected in Spring Creek and Rapid Creek near Rapid City, South Dakota, 2003-04

USGS Publications Warehouse

Putnam, Larry D.; Long, Andrew J.

2007-01-01

The Madison aquifer, which contains fractures and solution openings in the Madison Limestone, is used extensively for water supplies for the city of Rapid City and other suburban communities in the Rapid City, S. Dak., area. The 48 square-mile study area includes the west-central and southwest parts of Rapid City and the outcrops of the Madison Limestone extending from south of Spring Creek to north of Rapid Creek. Recharge to the Madison Limestone occurs when streams lose flow as they cross the outcrop. The maximum net loss rate for Spring and Rapid Creek loss zones are 21 and 10 cubic feet per second (ft3/s), respectively. During 2003 and 2004, fluorescent dyes were injected in the Spring and Rapid Creek loss zones to estimate approximate locations of preferential flow paths in the Madison aquifer and to measure the response and transit times at wells and springs. Four injections of about 2 kilograms of fluorescein dye were made in the Spring Creek loss zone during 2003 (sites S1, S2, and S3) and 2004 (site S4). Injection at site S1 was made in streamflow just upstream from the loss zone over a 12-hour period when streamflow was about equal to the maximum loss rate. Injections at sites S2, S3, and S4 were made in specific swallow holes located in the Spring Creek loss zone. Injection at site R1 in 2004 of 3.5 kilograms of Rhodamine WT dye was made in streamflow just upstream from the Rapid Creek loss zone over about a 28-hour period. Selected combinations of 27 wells, 6 springs, and 3 stream sites were monitored with discrete samples following the injections. For injections at sites S1-S3, when Spring Creek streamflow was greater than or equal to 20 ft3/s, fluorescein was detected in samples from five wells that were located as much as about 2 miles from the loss zone. Time to first arrival (injection at site S1) ranged from less than 1 to less than 10 days. The maximum fluorescein concentration (injection at site S1) of 120 micrograms per liter (ug/L) at well CO, which is located adjacent to the loss zone, was similar to the concentration in the stream. Fluorescein arrived at well NON (injection at site S1), which is located about 2 miles northeast of the loss zone, within about 1.6 days, and the maximum concentration was 44 ug/L. For injection at site S4, when streamflow was about 12 ft3/s, fluorescein was detected in samples from six wells and time to first arrival ranged from 0.2 to 16 days. Following injection at site S4 in 2004, the length of time that dye remained in the capture zone of well NON, which is located approximately 2 miles from the loss zone, was almost an order of magnitude greater than in 2003. For injection at site R1, Rhodamine WT was detected at well DRU and spring TI-SP with time to first arrival of about 0.5 and 1.1 days and maximum concentrations of 6.2 and 0.91 ug/L, respectively. Well DRU and spring TI-SP are located near the center of the Rapid Creek loss zone where the creek has a large meander. Measurable concentrations were observed for spring TI-SP as many as 109 days after the dye injection. The direction of a conduit flow path in the Spring Creek area was to the northeast with ground-water velocities that ranged from 770 to 6,500 feet per day. In the Rapid Creek loss zone, a conduit flow path east of the loss zone was not evident from the dye injection.

A silicon dioxide modified magnetic nanoparticles-labeled lateral flow strips for HBs antigen.

PubMed

Zhang, Xueqing; Jiang, Lin; Zhang, Chunlei; Li, Ding; Wang, Can; Gao, Feng; Cui, Daxiang

2011-12-01

Herein we reported a new type of silicon dioxide wrapped magnetic nanoparticles-labeled lateral flow strip for detection of HBs antigen in sera. The SiO2 wrapped Fe3O4 nanocomposites were prepared and characterized by HR-TEM, FTIR and magnetometer. As-prepared nanocomposites were used to label anti-HBV surface monoclonal antibody, the lateral flow strips were constructed, and 100 specimens of sera were collected and tested. Results showed that the prepared SiO2 wrapped Fe3O4 nanocomposites were shell/core structure, well dispersed, with the size of 25 nm in diameter, the thickness of the shell was about 3 nm, their magnetic saturation intensity was 44.3 meu g(-1). Clinical sera specimens test results showed that the prepared lateral flow strips were with the detection limitation of 5 pg/mL by naked eye observation, and 0.1 pg/mL by CCD reader or MAR Analyzer, specificity was 100%. In conclusion, one kind of silicon dioxide wrapped magnetic nanoparticles-labeled lateral flow strip for ultrasensitive detection of HBs antigen was successfully developed, its ease of use, sensitiveness and low-cost make it well-suited for population-based on-the-site hepatitis B screening.

Quantifying Trophic Interactions and Carbon Flow in Louisiana Salt Marshes Using Multiple Biomarkers

NASA Astrophysics Data System (ADS)

Polito, M. J.; Lopez-Duarte, P. C.; Olin, J.; Johnson, J. J.; Able, K.; Martin, C. W.; Fodrie, J.; Hooper-Bui, L. M.; Taylor, S.; Stouffer, P.; Roberts, B. J.; Rabalais, N. N.; Jensen, O.

2017-12-01

Salt marshes are critical habitats for many species in the northern Gulf of Mexico. However, given their complex nature, quantifying trophic linkages and the flow of carbon through salt marsh food webs is challenging. This gap in our understanding of food web structure and function limits our ability to evaluate the impacts of natural and anthropogenic stressors on salt marsh ecosystems. For example, 2010 Deepwater Horizon (DWH) oil spill had the potential to alter trophic and energy pathways. Even so, our ability to evaluate its effects on Louisiana salt marsh food webs was limited by a poor basis for comparison of the pre-spill baseline food web. To be better equipped to measure significant alterations in salt marsh ecosystems in the future, we quantified trophic interactions at two marsh sites in Barataria Bay, LA in May and October of 2015. Trophic structure and carbon flow across 52 species of saltmarsh primary producers and consumers were examined through a combination of three approaches: bulk tissue stable isotope analysis (δ13C, δ15N, δ34S), dietary fatty acid analysis (FAA), and compound-specific stable isotope analysis of essential amino acids (δ13C EAA). Bulk stable isotope analysis indicated similar trophic diversity between sites and seasons with the use of aquatic resources increasing concomitantly with trophic level. FAA and δ13C EAA biomarkers revealed that marsh organisms were largely divided into two groups: those that primarily derive carbon from terrestrial C4 grasses, and those that predominately derive carbon from a combination of phytoplankton and benthic microalgal sources. Differences in trophic structure and carbon flow were minimal between seasons and sites that were variably impacted by the DWH spill. These data on salt marsh ecosystem structure will be useful to inform future injury assessments and restoration initiatives.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gutierrez, Marte

Colorado School of Mines conducted research and training in the development and validation of an advanced CO{sub 2} GS (Geological Sequestration) probabilistic simulation and risk assessment model. CO{sub 2} GS simulation and risk assessment is used to develop advanced numerical simulation models of the subsurface to forecast CO2 behavior and transport; optimize site operational practices; ensure site safety; and refine site monitoring, verification, and accounting efforts. As simulation models are refined with new data, the uncertainty surrounding the identified risks decrease, thereby providing more accurate risk assessment. The models considered the full coupling of multiple physical processes (geomechanical and fluidmore » flow) and describe the effects of stochastic hydro-mechanical (H-M) parameters on the modeling of CO{sub 2} flow and transport in fractured porous rocks. Graduate students were involved in the development and validation of the model that can be used to predict the fate, movement, and storage of CO{sub 2} in subsurface formations, and to evaluate the risk of potential leakage to the atmosphere and underground aquifers. The main major contributions from the project include the development of: 1) an improved procedure to rigorously couple the simulations of hydro-thermomechanical (H-M) processes involved in CO{sub 2} GS; 2) models for the hydro-mechanical behavior of fractured porous rocks with random fracture patterns; and 3) probabilistic methods to account for the effects of stochastic fluid flow and geomechanical properties on flow, transport, storage and leakage associated with CO{sub 2} GS. The research project provided the means to educate and train graduate students in the science and technology of CO{sub 2} GS, with a focus on geologic storage. Specifically, the training included the investigation of an advanced CO{sub 2} GS simulation and risk assessment model that can be used to predict the fate, movement, and storage of CO{sub 2} in underground formations, and the evaluation of the risk of potential CO{sub 2} leakage to the atmosphere and underground aquifers.« less

Water quality in Reedy Fork and Buffalo Creek basins in the Greensboro area, North Carolina, 1986-87

USGS Publications Warehouse

Davenport, M.S.

1989-01-01

Water and bottom-sediment samples were collected from April 1986 through September 1987 at 19 sites in Guilford County and the City of Greensboro, North Carolina. Sampling locations included 13 stream sites, two lakes that supply the City of Greensboro with drinking water, two City of Greensboro finished drinking-water filtration plants, and effluent from the two municipal wastewater plants prior to outfall into receiving streams. Water sampling consisted of six surveys during various stages of steady ground-water flow at all sites and high-flow-event sampling during two storms at six sites. Bottom-sediment samples were collected at three sites during two routine sampling surveys. A summary of nearly 22, 000 separate chemical or physical analyses of water samples or bottom sediment is presented and discussed as individual values, ranges of values, or median values with respect to the locations of sampling sites, streamflow conditions, or other information bearing on water-quality conditions under discussion. The results include discussions of general water-quality indicators; major ion, nutrient, and trace-element concentrations; acid and base/neutral extractable organic compounds; volatile organic compounds; and organochlorine and organophosphorus pesticides detected at each sampling site. Loadings of selected constituents are also estimated on a yearly and daily basis. The quality of the raw and finished water, municipal effluents, and streams in the Greensboro area are characterized by using State and Federal water-quality standards. Inorganic constituents most commonly found in excess of standards were iron, copper, zinc, arsenic, phosphorus, manganese, cyanide, and mercury. Relatively few organic compounds were detected; however, those consistently reported were phthalate, thihalomethane, organophosphorus pesticide, benzol, and phenolic compounds. Selected inorganic, physical, and total organic carbon data are used in a Wilcoxon test for two independent variables to statistically compare water-quality characteristics in selected rural, semideveloped and urban basins. During low-flow sampling, the constituents that differed significantly among all sites were calcium, magnesium, and chloride. During low flows, concentrations of orthophosphate, fluoride, sulfate, and TOC differed at the urban site from the rural and semideveloped and urban sites. There were no significant differences among sites in concentrations of sodium, suspended sediment, nickel, zinc, copper, and mercury during low flows. The Wilcoxon test performed on high-flow data indicated that concentrations of TOC, chloride, sulfate, suspended sediment, and nickel were not significantly different among the sites.

Infiltration Processes and Flow Velocities Across the Landscape: When and Where is Macropore Flow Relevant?

NASA Astrophysics Data System (ADS)

Demand, D.; Blume, T.; Weiler, M.

2017-12-01

Preferential flow in macropores significantly affects the distributions of water and solutes in soil and many studies showed its relevance worldwide. Although some models include this process as a second pore domain, little is known about the spatial patterns and temporal dynamics. For example, while flow in the matrix is usually modeled and parameterized based on soil texture, an influence of texture on non-capillary flow for a given land-use class is poorly understood. To investigate the temporal and spatial dynamics on preferential flow we used a four-year soil moisture dataset from the mesoscale Attert catchment (288 km²) in Luxembourg. This dataset contains time series from 126 soil profiles in different textures and two land-use classes (forest, grassland). The soil moisture probes were installed in 10, 30 and 50 cm depth and measured in a 5-minute temporal resolution. Events were defined by a soil moisture increase higher than the instrument noise after a precipitation sum of more than 1 mm. Precipitation was measured next to the profiles so that each location could be associated to its unique precipitation characteristics. For every event and profile the soil moisture reaction was classified in sequential (ordered by depth) and non-sequential response. A non-sequential soil moisture reaction was used as an indicator of preferential flow. For sequential flow, the velocity was determined by the first reaction between two vertically adjacent sensors. The sensor reaction and wetting front velocity was analyzed in the context of precipitation characteristics and initial soil water content. Grassland sites showed a lower proportion of non-sequential flow than forest sites. For forest, non-sequential response is dependent on texture, rainfall intensity and initial water content. This is less distinct for the grassland sites. Furthermore, sequential reactions show higher flow velocities at sites, which also have high percentage of non-sequential response. In contrast, grassland sites show a more homogenous wetting front independent of soil texture. Compared against common modelling approaches of soil water flow, measured velocities show clear evidence of preferential flow, especially for forest soils. The analysis also shows that vegetation can alter the soil properties above the textural properties alone.

A Geometric Representation of Collective Attention Flows.

PubMed

Shi, Peiteng; Huang, Xiaohan; Wang, Jun; Zhang, Jiang; Deng, Su; Wu, Yahui

2015-01-01

With the fast development of Internet and WWW, "information overload" has become an overwhelming problem, and collective attention of users will play a more important role nowadays. As a result, knowing how collective attention distributes and flows among different websites is the first step to understand the underlying dynamics of attention on WWW. In this paper, we propose a method to embed a large number of web sites into a high dimensional Euclidean space according to the novel concept of flow distance, which both considers connection topology between sites and collective click behaviors of users. With this geometric representation, we visualize the attention flow in the data set of Indiana university clickstream over one day. It turns out that all the websites can be embedded into a 20 dimensional ball, in which, close sites are always visited by users sequentially. The distributions of websites, attention flows, and dissipations can be divided into three spherical crowns (core, interim, and periphery). 20% popular sites (Google.com, Myspace.com, Facebook.com, etc.) attracting 75% attention flows with only 55% dissipations (log off users) locate in the central layer with the radius 4.1. While 60% sites attracting only about 22% traffics with almost 38% dissipations locate in the middle area with radius between 4.1 and 6.3. Other 20% sites are far from the central area. All the cumulative distributions of variables can be well fitted by "S"-shaped curves. And the patterns are stable across different periods. Thus, the overall distribution and the dynamics of collective attention on websites can be well exhibited by this geometric representation.

A Geometric Representation of Collective Attention Flows

PubMed Central

Shi, Peiteng; Huang, Xiaohan; Wang, Jun; Zhang, Jiang; Deng, Su; Wu, Yahui

2015-01-01

With the fast development of Internet and WWW, “information overload” has become an overwhelming problem, and collective attention of users will play a more important role nowadays. As a result, knowing how collective attention distributes and flows among different websites is the first step to understand the underlying dynamics of attention on WWW. In this paper, we propose a method to embed a large number of web sites into a high dimensional Euclidean space according to the novel concept of flow distance, which both considers connection topology between sites and collective click behaviors of users. With this geometric representation, we visualize the attention flow in the data set of Indiana university clickstream over one day. It turns out that all the websites can be embedded into a 20 dimensional ball, in which, close sites are always visited by users sequentially. The distributions of websites, attention flows, and dissipations can be divided into three spherical crowns (core, interim, and periphery). 20% popular sites (Google.com, Myspace.com, Facebook.com, etc.) attracting 75% attention flows with only 55% dissipations (log off users) locate in the central layer with the radius 4.1. While 60% sites attracting only about 22% traffics with almost 38% dissipations locate in the middle area with radius between 4.1 and 6.3. Other 20% sites are far from the central area. All the cumulative distributions of variables can be well fitted by “S”-shaped curves. And the patterns are stable across different periods. Thus, the overall distribution and the dynamics of collective attention on websites can be well exhibited by this geometric representation. PMID:26325390

Uncertainty and the Conceptual Site Model

NASA Astrophysics Data System (ADS)

Price, V.; Nicholson, T. J.

2007-12-01

Our focus is on uncertainties in the underlying conceptual framework upon which all subsequent steps in numerical and/or analytical modeling efforts depend. Experienced environmental modelers recognize the value of selecting an optimal conceptual model from several competing site models, but usually do not formally explore possible alternative models, in part due to incomplete or missing site data, as well as relevant regional data for establishing boundary conditions. The value in and approach for developing alternative conceptual site models (CSM) is demonstrated by analysis of case histories. These studies are based on reported flow or transport modeling in which alternative site models are formulated using data that were not available to, or not used by, the original modelers. An important concept inherent to model abstraction of these alternative conceptual models is that it is "Far better an approximate answer to the right question, which is often vague, than the exact answer to the wrong question, which can always be made precise." (Tukey, 1962) The case histories discussed here illustrate the value of formulating alternative models and evaluating them using site-specific data: (1) Charleston Naval Site where seismic characterization data allowed significant revision of the CSM and subsequent contaminant transport modeling; (2) Hanford 300-Area where surface- and ground-water interactions affecting the unsaturated zone suggested an alternative component to the site model; (3) Savannah River C-Area where a characterization report for a waste site within the modeled area was not available to the modelers, but provided significant new information requiring changes to the underlying geologic and hydrogeologic CSM's used; (4) Amargosa Desert Research Site (ADRS) where re-interpretation of resistivity sounding data and water-level data suggested an alternative geologic model. Simple 2-D spreadsheet modeling of the ADRS with the revised CSM provided an improved match to vapor-phase tritium migration. Site-specific monitoring coupled to these alternative CSM's greatly assists in conducting uncertainty assessments. (Work supported by USNRC contract NRC-04-03-061.)

Low-flow water-quality characterization of the Gore Creek watershed, upper Colorado River basin, Colorado, August 1996

USGS Publications Warehouse

Wynn, Kirby H.; Spahr, Norman E.

1998-01-01

The Upper Colorado River Basin (UCOL) is one of 59 National Water-Quality Assessment (NAWQA) study units designed to assess the status and trends of the Nation?s water quality (Leahy and others, 1990). The UCOL study unit began operation in 1994, and surface-water-quality data collection at a network of 14 sites began in October 1995 (Apodaca and others, 1996; Spahr and others, 1996). Gore Creek, which flows through Vail, Colorado, originates in pristine alpine headwaters and is designated a gold-medal trout fishery. The creek drains an area of about 102 square miles and is a tributary to the Eagle River. Gore Creek at the mouth near Minturn (site 13 in fig. 1) is one of the 14 sites in the UCOL network. This site was selected to evaluate water quality resulting from urban development and recreational land use. The Gore Creek watershed has undergone rapid land-use changes since the 1960?s as the Vail area shifted from traditional mountain ranchlands to a four-season resort community. Residential, recreational, commercial, and transportation development continues near Gore Creek and its tributaries to support the increasing permanent and tourist population of the area. Interstate 70 runs through the watershed from Vail Pass near site 14, along the eastern side of Black Gore Creek, and along the northern side of the main stem of Gore Creek to the mouth of the watershed (fig. 1). A major local concern is how increasing urbanization/recreation affects the water quality, gold-medal trout fishery, and aesthetic values of Gore Creek. An evaluation of the spatial characteristics of water quality in the watershed upstream from site 13 at the mouth of Gore Creek (fig. 1) can provide local water and land managers with information necessary to establish water policy and make land-use planning decisions to maintain or improve water quality. Historical data collected at the mouth of Gore Creek provide information about water quality resulting from land use, but a synoptic sampling is needed to determine the distribution and sources of water-quality constituents at one point in time. In August 1996, a low-flow synoptic sampling for analyses of water-quality properties and constituents at sites in the Gore Creek watershed was done by the U.S. Geological Survey, in cooperation with the Town of Vail, Eagle River Water and Sanitation District, Upper Eagle River Water Authority, and Northwest Colorado Council of Governments, to evaluate the water quality of Gore Creek. The August low-flow period can be important from water-quality and stream ecology perspectives. There is less water available to dilute any contaminants entering the streams, and stream temperatures are highest during August. Physical habitat for aquatic plants and animals is smaller than during most other times of the year. To address these more extreme water-quality and ecological conditions, the synoptic sampling was conducted during the summer low-flow period. Specific objectives of this sampling included: 1. Establish a current data set representing the spatial characteristics of low-flow water-quality conditions in the Gore Creek watershed, and 2. Develop some understanding of land-use and water-quality relations in the watershed. This fact sheet presents hydrologic background information and an analysis of general water-quality properties and constituents, trace elements, and nutrients collected in water samples during low-flow synoptic sampling of the Gore Creek watershed. The U.S. Geological Survey also is conducting a study of the algae and macroinvertebrate communities and physical habitat of streams in the Gore Creek watershed during low flow. This study is designed to provide information about land-use and stream ecology relations in the watershed.

Evaluation and enhancement of Texas ramp metering strategies, compliance, and alternative enforcement techniques: Go with the flow Houston. Public outreach plan (revised); Interim research report, September 1995--October 1996

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lancaster, S.; Fette, B.; Busler, L.

This report describes the public outreach plan on the implementation of ramp meters along the Katy Freeway in Houston, Generally, ramp metering is neither beloved nor understood by the public. To gain public awareness, acceptance, compliance and continued support, ramp metering operations should be reinforced by a strong, ongoing public information and outreach campaign that communicates the need for and benefits of the program. Because the term `ramp metering` exhibits restrictions on the public, the phrase `Flow Signals` was developed to better describe the benefits of ramp metering; enhanced flow of traffic, fewer bottlenecks, and fewer trip delays. The logo,more » `Go with the Flow Houston,` and a graphic identity were developed to help communicate the theme throughout the various media where both the primary and secondary messages are intended to reach 15 different audiences. These media will include: a PSA, both static and changeable message signs, a brochure, Internet web site information, letters to specific audience and media relations efforts.« less

What are the governing processes during low-flows in a chalk catchment?

NASA Astrophysics Data System (ADS)

Lubega Musuuza, Jude; Coxon, Gemma; Hutton, Chris; Howden, Nicholas; Woods, Ross; Freer, Jim; Wagener, Thorsten

2016-04-01

Low flows are important because they lead to the prioritisation of different consumptive water usages, imposition of restrictions and bans, raising of water tariffs and higher production costs to industry. The partitioning of precipitation into evaporation, storage and runoff depends on the local variability in meteorological variables and site-specific characteristics e.g., topography, soils and vegetation. The response of chalk catchments to meteorological forcing especially precipitation is of particular interest because of the preferential flow through the weathered formation. This makes the observed stream discharge groundwater-dominated and hence, out of phase with precipitation. One relevant question is how sensitive the low flow characteristics of such a chalk catchment is to changes in climate and land use. It is thus important to understand all the factors that control low stream discharge periods. In this study we present the results from numerical sensitivity analysis experiments performed with a detailed physically-based model on the Kennet, a sub-catchment of the River Thames, in the UK during the historical drought years of the 1970's.

Low-flow characteristics for streams on the Islands of Kauaʻi, Oʻahu, Molokaʻi, Maui, and Hawaiʻi, State of Hawaiʻi

USGS Publications Warehouse

Cheng, Chui Ling

2016-08-03

Statistical models were developed to estimate natural streamflow under low-flow conditions for streams with existing streamflow data at measurement sites on the Islands of Kauaʻi, Oʻahu, Molokaʻi, Maui, and Hawaiʻi. Streamflow statistics used to describe the low-flow characteristics are flow-duration discharges that are equaled or exceeded between 50 and 95 percent of the time during the 30-year base period 1984–2013. Record-augmentation techniques were applied to develop statistical models relating concurrent streamflow data at the measurement sites and long-term data from nearby continuous-record streamflow-gaging stations that were in operation during the base period and were selected as index stations. Existing data and subsequent low-flow analyses of the available data help to identify streams in under-represented geographic areas and hydrogeologic settings where additional data collection is suggested.Low-flow duration discharges were estimated for 107 measurement sites (including long-term and short-term continuous-record streamflow-gaging stations, and partial-record stations) and 27 index stations. The adequacy of statistical models was evaluated with correlation coefficients and modified Nash-Sutcliff coefficients of efficiency, and a majority of the low-flow duration-discharge estimates are satisfactory based on these regression statistics.Molokaʻi and Hawaiʻi have the fewest number of measurement sites (that are not located on ephemeral stream reaches) at which flow-duration discharges were estimated, which can be partially explained by the limited number of index stations available on these islands that could be used for record augmentation. At measurement sites on some tributary streams, low-flow duration discharges could not be estimated because no adequate correlations could be developed with the index stations. These measurement sites are located on streams where duration-discharge estimates are available at long-term stations at other locations on the main stream channel to provide at least some definition of low-flow characteristics on that stream. In terms of general natural streamflow data availability, data are scarce in the leeward areas for all five islands as many leeward streams are dry or have minimal flow. Other under-represented areas include central Oʻahu, central Maui, and southeastern Maui.

Numerical simulations of water flow and tracer transport in soils at the USDA-ARS Beltsville OPE3 field site

USDA-ARS?s Scientific Manuscript database

The objective of this study was to develop a realistic model to simulate the complex processes of flow and tracer transport in USDA-ARS OPE3 field site and to compare simulation results with the detailed monitoring observations. The site has been studied for over 10 years with the extensive availabl...

Toward development of a comprehensive external quality assurance program for polyfunctional intracellular cytokine staining assays

PubMed Central

Staats, Janet S.; Enzor, Jennifer H.; Sanchez, Ana M.; Rountree, Wes; Chan, Cliburn; Jaimes, Maria; Chan, Ray Chun-Fai; Gaur, Amitabh; Denny, Thomas N.; Weinhold, Kent J.

2014-01-01

The External Quality Assurance Program Oversight Laboratory (EQAPOL) Flow Cytometry Program assesses the proficiency of NIH/NIAID/DAIDS-supported and potentially other interested research laboratories in performing Intracellular Cytokine Staining (ICS) assays. The goal of the EQAPOL Flow Cytometry External Quality Assurance Program (EQAP) is to provide proficiency testing and remediation for participating sites. The program is not punitive; rather, EQAPOL aims to help sites identify areas for improvement. EQAPOL utilizes a highly standardized ICS assay to minimize variability and readily identify those sites experiencing technical difficulties with their assays. Here, we report the results of External Proficiency 3 (EP3) where participating sites performed a 7-color ICS assay. On average, sites perform well in the Flow Cytometry EQAP (median score is “Good”). The most common technical issues identified by the program involve protocol adherence and data analysis; these areas have been the focus of site remediation. The EQAPOL Flow Cytometry team is now in the process of expanding the program to 8-color ICS assays. Evaluating polyfunctional ICS responses would align the program with assays currently being performed in support of HIV immune monitoring assays. PMID:24968072

Understanding cation ordering and oxygen vacancy site preference in Ba3CaNb2O9 from first-principles

NASA Astrophysics Data System (ADS)

Ding, Hepeng; Virkar, Anil; Liu, Feng

2014-03-01

We investigate the physical mechanism underlying the formation of the B-site cation ordering and the oxygen vacancy site selection in Ba3CaNb2O9 using density functional theory calculations. We found that either cation site exchange or oxygen vacancy formation induces negligible lattice strain. This implies that the ionic radius plays an insignificant role in governing these two processes. Furthermore, the electrostatic interactions are found dominant in the ordering of mixed valence species on one or more sites, the ionic bond strength is identified as the dominant force in governing both the 1:2 B-site cation ordering along the <111>direction and the oxygen vacancy site preference in Ba3CaNb2O9. Specifically, the cation ordering can be rationalized by the increased mixing bonding energy of the Ca-O-Nb bonds over the Ca-O-Ca and Nb-O-Nb bonds, i.e., 1/2(Ca-O-Ca + Nb-O-Nb)

Hydrologic data collected in the vicinity of the proposed gamma-ray and neutrino detector site, Hot Spring County, Arkansas, 1988-89

USGS Publications Warehouse

Fitzpatrick, D.J.; Westerfield, P.W.

1990-01-01

An abandoned barite mine in Hot Spring County, Arkansas, has been selected as the location for a proposed gamma-ray and neutrino detector site. As part of the hydrologic evaluation of the site, the U.S. Geological Survey in cooperation with the Arkansas Geological Commission collected hydrologic data at selected locations in the vicinity of the abandoned barite mine. Data collected as part of the project included water quality, pond-evaluation, and precipitation data within the abandoned barite mine and flow and water quality data at selected sites in the vicinity of the mine. Water quality samples from within the abandoned mine were collected at three locations in the pond at selected depths. These data included field measurements of specific conductance, pH, water temperature, dissolved oxygen, major ions, and trace metals. Major ion and trace-metal samples were collected at six stream sites, one lake site, and two wastewater pond sites. Pond elevation and precipitation data from within the abandoned barite mine were measured during the period between July 1, 1988 and June 30, 1989. Twevle discharge measurements during the period between June 21, 1988, and June 26, 1989, were collected at six sites in the vicinity of the abandoned barite mine. (USGS)

Evaluation of microvascular anastomosis using real-time ultrahigh resolution Fourier domain Doppler optical coherence tomography

PubMed Central

Huang, Yong; Tong, Dedi; Zhu, Shan; Wu, Lehao; Mao, Qi; Ibrahim, Zuhaib; Lee, WP Andrew; Brandacher, Gerald; Kang, Jin U.

2014-01-01

Background Evolution and improvements in microsurgical techniques and tools have paved the way for super-microsurgical anastomoses with vessel diameters often approaching below 0.8 mm in the clinical realm and even smaller (0.2–0.3 mm) in murine models. Several imaging and monitoring devices have been introduced for post-operative monitoring but intra-operative guidance, assessment and predictability have remained limited to binocular optical microscope and surgeon’s experience. We present a high-resolution real time 3D imaging modality for intra-operative evaluation of luminal narrowing, thrombus formation and flow alterations. Methods An imaging modality that provides immediate, in-depth high resolution 3D structure view and flow information of the anastomosed site called phase resolved Doppler optical coherence tomography (PRDOCT) was developed. 22 mouse femoral artery anastomoses and 17 mouse venous anastomoses were performed and evaluated with PRDOCT. Flow status, vessel inner lumen 3D structure, and early thrombus detection were analyzed based on PRDOCT imaging results. Initial PRDOCT based predictions were correlated with actual long term surgical outcomes. Eventually four cases of mouse orthotopic limb transplantation were carried out and PRDOCT predicted long term patency were confirmed by actual results. Results PRDOCT was able to provide high-resolution 3D visualization of the vessel flow status and vessel inner lumen. The assessments based on PRDOCT visualization shows a 92% sensitivity and 90% specificity for arterial anastomoses and 90% sensitivity and 86% specificity for venous anastomoses. Conclusions PRDOCT is an effective evaluation tool for microvascular anastomosis. It can predict the long term vessel patency with high sensitivity and specificity. PMID:25811583

Borehole flowmeter logging for the accurate design and analysis of tracer tests.

PubMed

Basiricò, Stefano; Crosta, Giovanni B; Frattini, Paolo; Villa, Alberto; Godio, Alberto

2015-04-01

Tracer tests often give ambiguous interpretations that may be due to the erroneous location of sampling points and/or the lack of flow rate measurements through the sampler. To obtain more reliable tracer test results, we propose a methodology that optimizes the design and analysis of tracer tests in a cross borehole mode by using vertical borehole flow rate measurements. Experiments using this approach, herein defined as the Bh-flow tracer test, have been performed by implementing three sequential steps: (1) single-hole flowmeter test, (2) cross-hole flowmeter test, and (3) tracer test. At the experimental site, core logging, pumping tests, and static water-level measurements were previously carried out to determine stratigraphy, fracture characteristics, and bulk hydraulic conductivity. Single-hole flowmeter testing makes it possible to detect the presence of vertical flows as well as inflow and outflow zones, whereas cross-hole flowmeter testing detects the presence of connections along sets of flow conduits or discontinuities intercepted by boreholes. Finally, the specific pathways and rates of groundwater flow through selected flowpaths are determined by tracer testing. We conclude that the combined use of single and cross-borehole flowmeter tests is fundamental to the formulation of the tracer test strategy and interpretation of the tracer test results. © 2014, National Ground Water Association.

Endoscopical determination of gastric mucosal blood flow by the crossed thermocouple method.

PubMed

Hiramatsu, A; Watanabe, T; Okuhira, M; Uchiyama, S; Mizuno, T; Sameshima, Y

1984-06-01

A crossed thermocouple method in combination with endoscopy was applied to determine the blood flow rate of the human gastric mucosa. Determination was carried out with 11 healthy control subjects at 8 sites of the stomach. The blood flow rates at all sites in the corpus were found to be higher than those at the antrum. In subjects less than 50 years old the blood flow rate in the corpus was higher than in older subjects. These results were in agreed well with those obtained by the hydrogen gas clearance method, which is widely adopted clinically. The crossed thermocouple method is easily applicable to all sites in the gastric mucosa and the time required for the assay is very short. This method dose not require the inhalation of hydrogen gas which is necessary for the hydrogen gas clearance method and which is possibly harmful to humans. Although the values obtained by the crossed thermocouple method are relative to the value at a certain fixed site, this method will holds great potential for the determination of gastric mucosal blood flow rate.

Water-Quality Data for the Lower Russian River Basin, Sonoma County, California, 2003-2004

USGS Publications Warehouse

Anders, Robert; Davidek, Karl; Koczot, Kathryn M.

2006-01-01

In 2003, the U.S. Geological Survey, in cooperation with the Sonoma County Water Agency, began a study to determine the chemical, microbiological, and isotopic composition of the surface water and ground water in selected areas of the Lower Russian River Basin, Sonoma County, California. This report is a compilation of the hydrologic and water-quality data collected from 10 Russian River sites, 1 gravel-terrace pit site, 12 ground-water sites, 11 tributary sites including Mark West Creek, and 2 estuary sites between the city of Healdsburg and the Pacific Ocean, for the period August 2003 to September 2004. Field measurements made included streamflow, barometric pressure, dissolved oxygen, pH, specific conductance, and turbidity. Water samples were analyzed for nutrients, major ions, total and dissolved organic carbon, trace elements, mercury, wastewater compounds, total coliform, Escherichia coli, Enterococci, Clostridium perfringens, and the stable isotopes of hydrogen and oxygen. Discharge measurements and sampling techniques were modified to accommodate the very low summer flows at most of the tributaries, and discharge measurements were made with an acoustic Doppler velocity meter at the estuary river site to overcome the complexities associated with tidal influences.

An assessment of the performance of municipal constructed wetlands in Ireland.

PubMed

Hickey, Anthony; Arnscheidt, Joerg; Joyce, Eadaoin; O'Toole, James; Galvin, Gerry; O' Callaghan, Mark; Conroy, Ken; Killian, Darran; Shryane, Tommy; Hughes, Francis; Walsh, Katherine; Kavanagh, Emily

2018-03-15

While performance assessments of constructed wetlands sites around the world have appraised their capacity for effective removal of organics, a large variance remains in these sites' reported ability to retain nutrients, which appears to depend on differences in design, operation and climate factors. Nutrient retention is a very important objective for constructed wetlands, to avoid eutrophication of aquatic environments receiving their effluents. This study assessed the performance of constructed wetlands in terms of nutrient retention and associated parameters under the humid conditions of Ireland's temperate maritime climate. A review of the performance of 52 constructed wetland sites from 17 local authorities aimed to identify the best performing types of constructed wetlands and the treatment factors determining successful compliance with environmental standards. Data analysis compared effluent results from constructed wetlands with secondary free surface flow or tertiary horizontal subsurface flow, hybrid systems and integrated constructed wetlands with those from small-scale mechanical wastewater treatment plants of the same size class. Nutrient concentrations in effluents of constructed wetlands were negatively correlated (p < .01) with specific area, i.e. the ratio of surface area and population equivalents. The latest generation of integrated constructed wetlands, which had applied design guidelines issued by the Department of the Environment, performed best. Storm management design features improved treatment performance of constructed wetlands significantly (p < .05) for total suspended solids concentrations and exceedance frequency of limit values for total nitrogen. Mechanical wastewater treatment plants, secondary free surface water and tertiary horizontal subsurface flow wetlands showed a very large variance in effluent concentrations for organic and nutrient parameters. E. coli numbers in effluents were lowest for integrated constructed wetlands with an arithmetic mean of 89 MPN/100 ml. Despite Ireland's humid climate, some constructed wetland sites achieved long or frequent periods of zero effluent discharge and thus did not transfer any waterborne pollution to their receptors during these periods. Copyright © 2018 Elsevier Ltd. All rights reserved.

KENNEDY SPACE CENTER, FLA. - Dr. Paul Hintze (left) explains to Center Director Jim Kennedy a project he is working at the KSC Beach Corrosion Test Site. Hitze is doing post-graduate work for the National Research Council. The test facility site was established in the 1960s and has provided more than 30 years of historical information on the long-term performance of many materials in use at KSC and other locations around the world. Located 100 feet from the Atlantic Ocean approximately 1 mile south of the Space Shuttle launch sites, the test facility includes an atmospheric exposure site, a flowing seawater exposure site, and an on-site electrochemistry laboratory and monitoring station. The beach laboratory is used to conduct real-time corrosion experiments and provides for the remote monitoring of surrounding weather conditions. The newly added flowing seawater immersion facility provides for the immersion testing of materials and devices under controlled conditions.

NASA Image and Video Library

2003-08-21

KENNEDY SPACE CENTER, FLA. - Dr. Paul Hintze (left) explains to Center Director Jim Kennedy a project he is working at the KSC Beach Corrosion Test Site. Hitze is doing post-graduate work for the National Research Council. The test facility site was established in the 1960s and has provided more than 30 years of historical information on the long-term performance of many materials in use at KSC and other locations around the world. Located 100 feet from the Atlantic Ocean approximately 1 mile south of the Space Shuttle launch sites, the test facility includes an atmospheric exposure site, a flowing seawater exposure site, and an on-site electrochemistry laboratory and monitoring station. The beach laboratory is used to conduct real-time corrosion experiments and provides for the remote monitoring of surrounding weather conditions. The newly added flowing seawater immersion facility provides for the immersion testing of materials and devices under controlled conditions.

Uncertainty in the modelling of spatial and temporal patterns of shallow groundwater flow paths: The role of geological and hydrological site information

NASA Astrophysics Data System (ADS)

Woodward, Simon J. R.; Wöhling, Thomas; Stenger, Roland

2016-03-01

Understanding the hydrological and hydrogeochemical responses of hillslopes and other small scale groundwater systems requires mapping the velocity and direction of groundwater flow relative to the controlling subsurface material features. Since point observations of subsurface materials and groundwater head are often the basis for modelling these complex, dynamic, three-dimensional systems, considerable uncertainties are inevitable, but are rarely assessed. This study explored whether piezometric head data measured at high spatial and temporal resolution over six years at a hillslope research site provided sufficient information to determine the flow paths that transfer nitrate leached from the soil zone through the shallow saturated zone into a nearby wetland and stream. Transient groundwater flow paths were modelled using MODFLOW and MODPATH, with spatial patterns of hydraulic conductivity in the three material layers at the site being estimated by regularised pilot point calibration using PEST, constrained by slug test estimates of saturated hydraulic conductivity at several locations. Subsequent Null Space Monte Carlo uncertainty analysis showed that this data was not sufficient to definitively determine the spatial pattern of hydraulic conductivity at the site, although modelled water table dynamics matched the measured heads with acceptable accuracy in space and time. Particle tracking analysis predicted that the saturated flow direction was similar throughout the year as the water table rose and fell, but was not aligned with either the ground surface or subsurface material contours; indeed the subsurface material layers, having relatively similar hydraulic properties, appeared to have little effect on saturated water flow at the site. Flow path uncertainty analysis showed that, while accurate flow path direction or velocity could not be determined on the basis of the available head and slug test data alone, the origin of well water samples relative to the material layers and site contour could still be broadly deduced. This study highlights both the challenge of collecting suitably informative field data with which to characterise subsurface hydrology, and the power of modern calibration and uncertainty modelling techniques to assess flow path uncertainty in hillslopes and other small scale systems.

Endothelium dependent and independent responses in coronary artery disease measured at angioplasty.

PubMed Central

Holdright, D R; Clarke, D; Poole-Wilson, P A; Fox, K; Collins, P

1993-01-01

OBJECTIVE--To investigate the effects of substance P and papaverine, two drugs that increase coronary blood flow by different mechanisms, on vasomotion in stenotic coronary arteries at percutaneous transluminal coronary angioplasty (PTCA). DESIGN--Coronary blood flow responses to substance P and papaverine were measured in stenotic coronary arteries at the time of PTCA with quantitative angiography and a Doppler flow probe. SETTING--A cardiothoracic referral centre. PATIENTS--15 patients undergoing elective PTCA of a discrete epicardial coronary artery stenosis. INTERVENTIONS--Pharmacological coronary flow reserve was determined with papaverine 5-10 minutes before and after successful PTCA. Endothelium dependent responses to 2 minute infusions of substance P (10-15 pmol.min-1) were assessed immediately before PTCA. MAIN OUTCOME MEASURES--Coronary blood flow responses and changes in epicardial coronary artery area at stenotic, proximal, and distal sites with papaverine and substance P. RESULTS--Stenotic sites dilated with papaverine before PTCA (17.7%(6.9%) (mean (SEM)) area increase, p < 0.05 v baseline). Substance P dilated stenotic sites (16.8%(5.7%) area increase, p < 0.05) and proximal (14.3%(5.4%), p < 0.05) and distal sites (41.7%(9.3%), p < 0.005). Coronary flow reserve increased but did not reach normal values after PTCA (2.3(0.4) before PTCA v 3.0(0.4) after PTCA, p < 0.05) and was associated with an increase in peak flow with papaverine. Angioplasty did not alter baseline flow. After PTCA papaverine caused significant vasoconstriction at the stenotic site (-13.6%(4.3%) area decrease, p < 0.05). There was a negative correlation (r = -0.68, p < 0.05) between the dilator response with papaverine before PTCA and the constrictor response after PTCA. CONCLUSIONS--Substance P causes endothelium dependent dilatation in atheromatous coronary arteries, even at sites of overt atheroma. The cause of the paradoxical constrictor response to papaverine after PTCA is uncertain, but unopposed flow mediated vasoconstriction (the myogenic response) after balloon induced endothelial denudation may be one of several contributory factors. PMID:7518687

Geomorphic response of the Sandy River, Oregon, to removal of Marmot Dam

USGS Publications Warehouse

Major, Jon J.; O'Connor, Jim E.; Podolak, Charles J.; Keith, Mackenzie K.; Grant, Gordon E.; Spicer, Kurt R.; Pittman, Smokey; Bragg, Heather M.; Wallick, J. Rose; Tanner, Dwight Q.; Rhode, Abagail; Wilcock, Peter R.

2012-01-01

The October 2007 breaching of a temporary cofferdam constructed during removal of the 15-meter (m)-tall Marmot Dam on the Sandy River, Oregon, triggered a rapid sequence of fluvial responses as ~730,000 cubic meters (m3) of sand and gravel filling the former reservoir became available to a high-gradient river. Using direct measurements of sediment transport, photogrammetry, airborne light detection and ranging (lidar) surveys, and, between transport events, repeat ground surveys of the reservoir reach and channel downstream, we monitored the erosion, transport, and deposition of this sediment in the hours, days, and months following breaching of the cofferdam. Rapid erosion of reservoir sediment led to exceptional suspended-sediment and bedload-sediment transport rates near the dam site, as well as to elevated transport rates at downstream measurement sites in the weeks and months after breaching. Measurements of sediment transport 0.4 kilometers (km) downstream of the dam site during and following breaching show a spike in the transport of fine suspended sediment within minutes after breaching, followed by high rates of suspended-load and bedload transport of sand. Significant transport of gravel bedload past the measurement site did not begin until 18 to 20 hours after breaching. For at least 7 months after breaching, bedload transport rates just below the dam site during high flows remained as much as 10 times above rates measured upstream of the dam site and farther downstream. The elevated sediment load was derived from eroded reservoir sediment, which began eroding when a meters-tall knickpoint migrated about 200 m upstream in the first hour after breaching. Rapid knickpoint migration triggered vertical incision and bank collapse in unconsolidated sand and gravel, leading to rapid channel widening. Over the following days and months, the knickpoint migrated upstream more slowly, simultaneously decreasing in height and becoming less distinct. Within 7 months, the knickpoint had migrated 2 km upstream from the dam site and became a riffle-like feature approximately 1 m high and a few tens of meters long. Knickpoint migration, vertical incision, and lateral erosion evacuated about 15 percent of the initial reservoir volume (125,000 m3) within 60 hours following breaching, and by the end of the high flows in May 2008, about 50 percent of the volume had been evacuated. Large stormflows in November 2008 and January 2009 eroded another 6 percent of the original volume of impounded sediment. Little additional sediment eroded during the remainder of the second year following breaching. The rapid erosion of sediment by the modest flow that accompanied dam breaching was driven mainly by the steep hydraulic gradient associated with the abrupt change of base level and knickpoint formation and was aided by the unconsolidated and cohesionless character of the reservoir sediment. In the ensuing months, transport competence diminished as channel geometry evolved and the river gradient through the reservoir reach diminished. Changes in profile gradient in conjunction with channel coarsening and widening led to a rapid slowing of the rate of reservoir erosion. Sediment transport and deposition were strongly controlled by channel-gradient discontinuities and valley morphology downstream of the dam site. Those influences led to a strong divergence of sand and gravel transport and to deposition of a sediment wedge, as much as 4 m thick, that tapered to the preremoval channel bed 1.3 km downstream of the dam site. After 2 years, that deposit contained about 25 percent of the total volume of sediment eroded from the reservoir. The balance was distributed among pools within the Sandy River gorge, a narrow bedrock canyon extending 2 to 9 km downstream of the dam site, and along the channel farther downstream. A two-fraction sediment budget for the first year following breaching indicates that most of the gravel eroded from the reservoir reach was deposited within the sediment wedge and within the gorge, whereas eroded sand largely passed through the gorge and was broadly dispersed farther downstream. The sequence of transporting flows affected the specific trajectory of reservoir erosion and downstream sediment transport during the 2 years following breaching. However, because the overall erosion was largely a consequence of knickpoint retreat and channel widening, which in the 2 years after removal had affected most of the reservoir reach, it is unlikely that the specific sequence of flows significantly affected the overall outcome. Because the knickpoint had largely passed through the reservoir within 2 years, and the remaining reservoir sediment is mostly isolated high above armored or bedrock banks, it is unlikely that substantial additional sediment from the reservoir site will enter the system unless very large flows occur. Continued channel evolution downstream of the dam site is probable as deposits formed in the first 2 years are episodically mobilized. Below the Sandy River gorge, detection of effects related to release of reservoir sediment is challenging, especially in areas of sand deposition, because of the high background supply of sand in the river and substantial channel dynamism.

Technique for predicting ground-water discharge to surface coal mines and resulting changes in head

USGS Publications Warehouse

Weiss, L.S.; Galloway, D.L.; Ishii, Audrey L.

1986-01-01

Changes in seepage flux and head (groundwater level) from groundwater drainage into a surface coal mine can be predicted by a technique that considers drainage from the unsaturated zone. The user applies site-specific data to precalculated head and seepage-flux profiles. Groundwater flow through hypothetical aquifer cross sections was simulated using the U.S. Geological Survey finite-difference model, VS2D, which considers variably saturated two-dimensional flow. Conceptual models considered were (1) drainage to a first cut, and (2) drainage to multiple cuts, which includes drainage effects of an area surface mine. Dimensionless head and seepage flux profiles from 246 simulations are presented. Step-by-step instructions and examples are presented. Users are required to know aquifer characteristics and to estimate size and timing of the mine operation at a proposed site. Calculated groundwater drainage to the mine is from one excavated face only. First cut considers confined and unconfined aquifers of a wide range of permeabilities; multiple cuts considers unconfined aquifers of higher permeabilities only. The technique, developed for Illinois coal-mining regions that use area surface mining and evaluated with an actual field example, will be useful in assessing potential hydrologic impacts of mining. Application is limited to hydrogeologic settings and mine operations similar to those considered. Fracture flow, recharge, and leakage are nor considered. (USGS)

Reconnaissance of Stream Geomorphology, Low Streamflow, and Stream Temperature in the Mountaintop Coal-Mining Region, Southern West Virginia, 1999-2000

USGS Publications Warehouse

Wiley, Jeffrey B.; Evaldi, Ronald D.; Eychaner, James H.; Chambers, Douglas B.

2001-01-01

The effects of mountaintop removal coal mining and the valley fills created by this mining method in southern West Virginia were investigated by comparing data collected at valley-fill, mined, and unmined sites. Bed material downstream of valley-fill sites had a greater number of particles less than 2 millimeters and a smaller median particle size than the mined and unmined sites. At the 84th percentile of sampled data, however, bed material at each site type had about the same size particles. Bankfull cross-sectional areas at a riffle section were approximately equal at valley-fill and unmined sites, but not enough time has passed and insufficient streamflows since the land was disturbed may have prevented the stream channel at valley-fill sites from reaching equilibrium. The 90-percent flow durations at valley-fill sites generally were 6-7 times greater than at unmined sites. Some valley-fill sites, however, exhibited streamflows similar to unmined sites, and some unmined sites exhibited streamflows similar to valley-fill sites. Daily streamflows from valley-fill sites generally are greater than daily streamflows from unmined sites during periods of low streamflow. Valley-fill sites have a greater percentage of base-flow and a lower percentage of flow from storm runoff than unmined sites. Water temperatures from a valley-fill site exhibited lower daily fluctuations and seasonal variations than water temperatures from an unmined site.

Flow and transport model of the Savannah River Site Old Burial Grounds using Data Fusion modeling (DFM)

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1995-11-01

The Data Fusion Modeling (DFM) approach has been used to develop a groundwater flow and transport model of the Old Burial Grounds (OBG) at the US Department of Energy`s Savannah River Site (SRS). The resulting DFM model was compared to an existing model that was calibrated via the typical trial-and-error method. The OBG was chosen because a substantial amount of hydrogeologic information is available, a FACT (derivative of VAM3DCG) flow and transport model of the site exists, and the calibration and numerics were challenging with standard approaches. The DFM flow model developed here is similar to the flow model bymore » Flach et al. This allows comparison of the two flow models and validates the utility of DFM. The contaminant of interest for this study is tritium, because it is a geochemically conservative tracer that has been monitored along the seepline near the F-Area effluent and Fourmile Branch for several years.« less

Nutrient and Suspended-Sediment Trends in the Missouri River Basin, 1993-2003

USGS Publications Warehouse

Sprague, Lori A.; Clark, Melanie L.; Rus, David L.; Zelt, Ronald B.; Flynn, Jennifer L.; Davis, Jerri V.

2007-01-01

Trends in streamflow and concentration of total nitrogen, nitrite plus nitrate, ammonia, total phosphorus, orthophosphorus, and suspended sediment were determined for the period from 1993 to 2003 at selected stream sites in the Missouri River Basin. Flow-adjusted trends in concentration (the trends that would have occurred in the absence of natural changes in streamflow) and non-flow-adjusted trends in concentration (the overall trends resulting from natural and human factors) were determined. In the analysis of flow-adjusted trends, the removal of streamflow as a variable affecting concentration allowed trends caused by other factors such as implementation of best management practices to be identified. In the analysis of non-flow-adjusted trends, the inclusion of any and all factors affecting concentration allowed trends affecting aquatic ecosystems and the status of streams relative to water-quality standards to be identified. Relations between the flow-adjusted and non-flow-adjusted trends and changes in streamflow, nutrient sources, ground-water inputs, and implementation of management practices also were examined to determine the major factors affecting the trends. From 1993 to 2003, widespread downward trends in streamflow indicated that drought conditions from about 2000 to 2003 led to decreasing streamflow throughout much of the Missouri River Basin. Flow-adjusted trends in nitrite plus nitrate and ammonia concentrations were split nearly equally between nonsignificant and downward; at about one-half of the sites, management practices likely were contributing to measurable decreases in concentrations of nitrite plus nitrate and ammonia. Management practices had less of an effect on concentrations of total nitrogen; downward flow-adjusted trends in total nitrogen concentrations occurred at only 2 of 19 sites. The pattern of non-flow-adjusted trends in nitrite plus nitrate concentrations was similar to the pattern of flow-adjusted trends; non-flow-adjusted trends were split nearly equally between nonsignificant and downward. A substantial source of nitrite plus nitrate to these streams likely was ground water; because of the time required for ground water to travel to streams, there may have been a lag time between the implementation of some pollution-control strategies and improvement in stream quality, contributing to the nonsignificant trends in nitrite plus nitrate. There were more sites with downward non-flow-adjusted trends than flow-adjusted trends in both ammonia and total nitrogen concentrations, possibly a result of decreased surface runoff from nonpoint sources associated with the downward trends in streamflow. No strong relations between any of the nitrogen trends and changes in nutrient sources or landscape characteristics were identified. Although there were very few upward trends in nitrogen from 1993 to 2003, there were upward flow-adjusted trends in total phosphorus concentrations at nearly one-half of the sites. At these sites, not only were pollution-control strategies not contributing to measurable decreases in total phosphorus concentrations, there was likely an increase in phosphorus loading on the land surface. There were fewer upward non-flow-adjusted than flow-adjusted trends in total phosphorus concentrations; at the majority of sites, overall total phosphorus concentrations did not change significantly during this period. The preponderance of upward flow-adjusted trends and nonsignificant non-flow-adjusted trends indicates that in some areas of the Missouri River Basin, overall concentrations of total phosphorus would have been higher without the decrease in streamflow and the associated decrease in surface runoff during the study period. During the study period, phosphorus loads from fertilizer generally increased at over one-half of the sites in the basin. Upward flow-adjusted trends were related to increasing fertilizer use in the upstream drainage area, particularly in the 10 percent

Cell–specific Variation in E-selectin Ligand Expression Among Human Peripheral Blood Mononuclear Cells: Implications for Immunosurveillance and Pathobiology

PubMed Central

Silva, Mariana; Fung, Ronald Kam Fai; Donnelly, Conor Brian; Videira, Paula Alexandra; Sackstein, Robert

2017-01-01

Both host defense and immunopathology are shaped by the ordered recruitment of circulating leukocytes to affected sites, a process initiated by binding of blood-borne cells to E-selectin displayed at target endothelial beds. Accordingly, knowledge of the expression and function of leukocyte E-selectin ligands is key to understanding the tempo and specificity of immunoreactivity. Here, we performed E-selectin adherence assays under hemodynamic flow conditions coupled with flow cytometry and western blot analysis to elucidate the function and structural biology of glycoprotein E-selectin ligands expressed on human peripheral blood mononuclear cells (PBMCs). Circulating monocytes uniformly express high levels of the canonical E-selectin binding determinant sLeX and display markedly greater adhesive interactions with E-selectin than do circulating lymphocytes, which exhibit variable E-selectin binding among CD4+ and CD8+ T-cells but no binding by B-cells. Monocytes prominently present sLeX decorations on an array of protein scaffolds including PSGL-1, CD43, and CD44 (rendering the E-selectin ligands CLA, CD43E, and HCELL, respectively), and B-cells altogether lack E-selectin ligands. Quantitative PCR gene expression studies of glycosyltransferases that regulate display of sLeX reveal high transcript levels among circulating monocytes and low levels among circulating B-cells, and, commensurately, cell surface α(1,3)-fucosylation reveals that acceptor sialyllactosaminyl glycans convertible into sLeX are abundantly expressed on human monocytes yet are relatively deficient on B-cells. Collectively, these findings unveil distinct cell-specific patterns of E-selectin ligand expression among human PBMCs, indicating that circulating monocytes are specialized to engage E-selectin and providing key insights into the molecular effectors mediating recruitment of these cells at inflammatory sites. PMID:28330896

Low-flow characteristics of streams on the Kitsap Peninsula and selected adjacent islands, Washington

USGS Publications Warehouse

Cummans, J.E.

1976-01-01

Low-flow-frequency data are tabulated for 90 streamflow sites on the Kitsap Peninsula and adjacent islands, Washington. Also listed are data for 56 additional sites which have insufficient measurements for frequency analysis but which have been observed having no flow at least once during the low-flow period. The streams drain relatively small basins; only three streams have drainage areas greater than 20.0 square miles, and only nine other streams have drainage areas greater than 10.0 square miles. Mean annual precipitation during the period 1931-60 ranged from about 25 inches near Hansville to about 70 inches near Tahuya. Low-flow-frequency curves plotted from records of streamflow at eight long-term gaging stations were used to determine data for low-flow durations of 7, 30, 60, 90, and 183 days. Regression techniques then were used to estimate low flows with frequencies up to 20 years for stations with less than 10 years of record and for miscellaneous sites where discharge measurements have been made. (Woodard-USGS)

Molecularly specific detection of bacterial lipoteichoic acid for diagnosis of prosthetic joint infection of the bone.

PubMed

Pickett, Julie E; Thompson, John M; Sadowska, Agnieszka; Tkaczyk, Christine; Sellman, Bret R; Minola, Andrea; Corti, Davide; Lanzavecchia, Antonio; Miller, Lloyd S; Thorek, Daniel Lj

2018-01-01

Discriminating sterile inflammation from infection, especially in cases of aseptic loosening versus an actual prosthetic joint infection, is challenging and has significant treatment implications. Our goal was to evaluate a novel human monoclonal antibody (mAb) probe directed against the Gram-positive bacterial surface molecule lipoteichoic acid (LTA). Specificity and affinity were assessed in vitro. We then radiolabeled the anti-LTA mAb and evaluated its effectiveness as a diagnostic imaging tool for detecting infection via immunoPET imaging in an in vivo mouse model of prosthetic joint infection (PJI). In vitro and ex vivo binding of the anti-LTA mAb to pathogenic bacteria was measured with Octet, ELISA, and flow cytometry. The in vivo PJI mouse model was assessed using traditional imaging modalities, including positron emission tomography (PET) with [ 18 F]FDG and [ 18 F]NaF as well as X-ray computed tomography (CT), before being evaluated with the zirconium-89-labeled antibody specific for LTA ([ 89 Zr]SAC55). The anti-LTA mAb exhibited specific binding in vitro to LTA-expressing bacteria. Results from imaging showed that our model could reliably simulate infection at the surgical site by bioluminescent imaging, conventional PET tracer imaging, and bone morphological changes by CT. One day following injection of both the radiolabeled anti-LTA and isotype control antibodies, the anti-LTA antibody demonstrated significantly greater ( P  < 0.05) uptake at S . aureus -infected prosthesis sites over either the same antibody at sterile prosthesis sites or of control non-specific antibody at infected prosthesis sites. Taken together, the radiolabeled anti-LTA mAb, [ 89 Zr]SAC55, may serve as a valuable diagnostic molecular imaging probe to help distinguish between sterile inflammation and infection in the setting of PJI. Future studies are needed to determine whether these findings will translate to human PJI.

Quantifying the capacity of compost buffers for treating agricultural runoff

NASA Astrophysics Data System (ADS)

Naranjo, S. A.; Beighley, R. E.; Buyuksonmez, F.

2007-12-01

Agricultural operations, specifically, avocado and commercial nurseries require frequent and significant fertilizing and irrigating which tends to result in excessive nutrient leaching and off-site runoff. The increased runoff contains high concentrations of nutrients which negatively impacts stream water quality. Researcher has demonstrated that best management practices such as compost buffers can be effective for reducing nutrient and sediment concentrations in agricultural runoff. The objective of this research is to evaluate both the hydraulic capacity and the nutrient removal efficiency of: (a) compost buffers and (b) buffers utilizing a combination of vegetation and compost. A series of experiments will be performed in the environmental hydraulics laboratory at San Diego State University. A tilting flume 12-m long, 27-cm wide and 25-cm deep will be used. Discharge is propelled by an axial flow pump powered by a variable speed motor with a maximum capacity of 30 liters per second. The experiments are designed to measure the ratio compost mass per flow rate per linear width. Two different discharges will be measured: (a) treatment discharge (maximum flow rate such that the buffer decreases the incoming nitrogen and phosphorus concentrations below a maximum allowable limit) and (b) breaking discharge (maximum flow rate the buffer can tolerate without structural failure). Experimental results are presented for the hydraulic analysis, and preliminary results are presented for the removal of nitrogen and phosphorus from runoff. The results from this project will be used to develop guidelines for installing compost buffers along the perimeters of nursery sites and avocado groves in southern California.

Application of a medium-range global hydrologic probabilistic forecast scheme to the Ohio River Basin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Voisin, Nathalie; Pappenberger, Florian; Lettenmaier, D. P.

2011-08-15

A 10-day globally applicable flood prediction scheme was evaluated using the Ohio River basin as a test site for the period 2003-2007. The Variable Infiltration Capacity (VIC) hydrology model was initialized with the European Centre for Medium Range Weather Forecasts (ECMWF) analysis temperatures and wind, and Tropical Rainfall Monitoring Mission Multi Satellite Precipitation Analysis (TMPA) precipitation up to the day of forecast. In forecast mode, the VIC model was then forced with a calibrated and statistically downscaled ECMWF ensemble prediction system (EPS) 10-day ensemble forecast. A parallel set up was used where ECMWF EPS forecasts were interpolated to the spatialmore » scale of the hydrology model. Each set of forecasts was extended by 5 days using monthly mean climatological variables and zero precipitation in order to account for the effect of initial conditions. The 15-day spatially distributed ensemble runoff forecasts were then routed to four locations in the basin, each with different drainage areas. Surrogates for observed daily runoff and flow were provided by the reference run, specifically VIC simulation forced with ECMWF analysis fields and TMPA precipitation fields. The flood prediction scheme using the calibrated and downscaled ECMWF EPS forecasts was shown to be more accurate and reliable than interpolated forecasts for both daily distributed runoff forecasts and daily flow forecasts. Initial and antecedent conditions dominated the flow forecasts for lead times shorter than the time of concentration depending on the flow forecast amounts and the drainage area sizes. The flood prediction scheme had useful skill for the 10 following days at all sites.« less

Hydraulic characterization of overpressured tuffs in central Yucca Flat, Nevada Test Site, Nye County, Nevada

USGS Publications Warehouse

Halford, Keith J.; Laczniak, Randell J.; Galloway, Devin L.

2005-01-01

A sequence of buried, bedded, air-fall tuffs has been used extensively as a host medium for underground nuclear tests detonated in the central part of Yucca Flat at the Nevada Test Site. Water levels within these bedded tuffs have been elevated hundreds of meters in areas where underground nuclear tests were detonated below the water table. Changes in the ground-water levels within these tuffs and changes in the rate and distribution of land-surface subsidence above these tuffs indicate that pore-fluid pressures have been slowly depressurizing since the cessation of nuclear testing in 1992. Declines in ground-water levels concurrent with regional land subsidence are explained by poroelastic deformation accompanying ground-water flow as fluids pressurized by underground nuclear detonations drain from the host tuffs into the overlying water table and underlying regional carbonate aquifer. A hydraulic conductivity of about 3 x 10-6 m/d and a specific storage of 9 x 10-6 m-1 are estimated using ground-water flow models. Cross-sectional and three-dimensional ground-water flow models were calibrated to measured water levels and to land-subsidence rates measured using Interferometric Synthetic Aperture Radar. Model results are consistent and indicate that about 2 million m3 of ground water flowed from the tuffs to the carbonate rock as a result of pressurization caused by underground nuclear testing. The annual rate of inflow into the carbonate rock averaged about 0.008 m/yr between 1962 and 2005, and declined from 0.005 m/yr in 2005 to 0.0005 m/yr by 2300.

Characterizing pharmaceutical, personal care product, and hormone contamination in a karst aquifer of southwestern Illinois, USA, using water quality and stream flow parameters.

PubMed

Dodgen, L K; Kelly, W R; Panno, S V; Taylor, S J; Armstrong, D L; Wiles, K N; Zhang, Y; Zheng, W

2017-02-01

Karst aquifers are drinking water sources for 25% of the global population. However, the unique geology of karst areas facilitates rapid transfer of surficial chemicals to groundwater, potentially contaminating drinking water. Contamination of karst aquifers by nitrate, chloride, and bacteria have been previously observed, but little knowledge is available on the presence of contaminants of emerging concern (CECs), such as pharmaceuticals. Over a 17-month period, 58 water samples were collected from 13 sites in the Salem Plateau, a karst region in southwestern Illinois, United States. Water was analyzed for 12 pharmaceutical and personal care products (PPCPs), 7 natural and synthetic hormones, and 49 typical water quality parameters (e.g., nutrients and bacteria). Hormones were detected in only 23% of samples, with concentrations of 2.2-9.1ng/L. In contrast, PPCPs were quantified in 89% of groundwater samples. The two most commonly detected PPCPs were the antimicrobial triclocarban, in 81% of samples, and the cardiovascular drug gemfibrozil, in 57%. Analytical results were combined with data of local stream flow, weather, and land use to 1) characterize the extent of aquifer contamination by CECs, 2) cluster sites with similar PPCP contamination profiles, and 3) develop models to describe PPCP contamination. Median detection in karst groundwater was 3 PPCPs at a summed concentration of 4.6ng/L. Sites clustered into 3 subsets with unique contamination models. PPCP contamination in Cluster I sites was related to stream height, manganese, boron, and heterotrophic bacteria. Cluster II sites were characterized by groundwater temperature, specific conductivity, sodium, and calcium. Cluster III sites were characterized by dissolved oxygen and barium. Across all sites, no single or small set of water quality factors was significantly predictive of PPCP contamination, although gemfibrozil concentrations were strongly related to the sum of PPCPs in karst groundwater. Copyright © 2016 Elsevier B.V. All rights reserved.

Hydrogeologic characterization of a proposed landfill expansion in Pickens County near Easley, South Carolina

USGS Publications Warehouse

Stringfield, W.J.

1994-01-01

This report presents the results of a hydrogeologic study in the Piedmont physiographic province of South Carolina to obtain geologic, hydrologic, and water-quality data from the site of a proposed landfill expansion in Pickens County near Easley, South Carolina. The geology of the study area is typical of the Piedmont region. The unconsolidated regolith on the site is soil and saprolite, which is a product of the weathered parent rock. The soil ranges in thickness from about 5 to 20 feet. The saprolite ranges in thickness from about 5 to 134 feet. The most abundant parent rock type in the area is a biotite gneiss. Ground- and surface-water data were collected at the site. Slug tests on the saprolite indicate a mean hydraulic conductivity of 3 x 0.000003 feet per second. Transmissivity ranges from 12 to 27 cubic feet per day per feet (squared per day). The ground-water velocity for the site ranges from 3 to 6 feet per year. The closest major stream to the site is Golden Creek. Based on low-flow data for Golden Creek, the estimated minimum 7 consecutive day flow that has a recurrence interval of 10 years (7Q10) at station 02186102 is 2.4 cubic feet per second. Water samples were collected from five monitoring wells at the proposed landfill expansion site and from one stream adjacent to the expansion site. Measured pH units ranged from 5.5 to 8.1, and alkalinity concentrations ranged from 5.1 to 73 milligrams per liter as CaCO3. Other water- quality data obtained included temperature and specific conductance, and 5-day BOD (biochemical oxygen demand), bicarbonate, ammonia-nitrogen, nitrite-nitrogen, nitrite plus nitrate, organic carbon, calcium, magnesium, sodium, potassium, chloride, sulfate, fluoride, and selected trace metal concentrations.

A conceptual model for the blooming behavior and persistence of the benthic mat-forming diatom Didymosphenia geminata in oligotrophic streams

NASA Astrophysics Data System (ADS)

Cullis, James D. S.; Gillis, Carole-Anne; Bothwell, Max L.; Kilroy, Cathy; Packman, Aaron; Hassan, Marwan

2012-06-01

The benthic, mat-forming diatomDidymosphenia geminata has the unique ability to produce large amounts of algal biomass under oligotrophic conditions in cold, fast flowing streams and rivers. This presents an ecological paradox that challenges our current understanding of stream ecosystem dynamics. Our understanding of the drivers of D. geminata ecology is still limited. Here we present a conceptual model for the blooming behavior and persistence of this species to advance scientific understanding of strategies for life in fast flowing oligotrophic waters and support the design of future research and mitigation measures for nuisance algal blooms. The conceptual model is based on a synthesis of data and ideas from a range of disciplines including hydrology, geomorphology, biogeochemistry, and ecology. The conceptual model highlights the role of water chemistry, river morphology, and flow thresholds in defining the habitat window for D. geminata. We propose that bed disturbance is a primary control on accumulation and persistence of D. geminataand that the removal threshold can be determined by synthesizing site-specific information on hydrology and geomorphology. Further, we propose that a key to understanding the didymo paradox is the separation of cellular reproduction and mat morphology with specific controls acting in respect of the different processes.

Debris flow hazard assessment for the Oregon Caves National Monument

USGS Publications Warehouse

Friday, John

1983-01-01

After experiencing a devastating debris flow in the Oregon Caves National Monument, the National Park Service needs an evaluation of the hazard of additional flows. Soil properties at six random sites were compared with those at the source of the debris flow. Although all sites had soils that could become unstable with sufficient moisture, soil at one site had properties similar to those at the scar and the potential for another flow was confirmed. The report suggests that winter weather conditions be closely monitored and compared to the antecedent conditions prior to the known failure. When the threshold for additional mass wasting is believed imminent, appropriate action can be taken to insure the safety of work personnel and the public. The peak streamflow that preceded the 5,200 cu yds of debris is estimated to have a 0.5 percent chance of being equaled or exceeded in any given year. (USGS)

Regional regression equations to estimate peak-flow frequency at sites in North Dakota using data through 2009

USGS Publications Warehouse

Williams-Sether, Tara

2015-08-06

Annual peak-flow frequency data from 231 U.S. Geological Survey streamflow-gaging stations in North Dakota and parts of Montana, South Dakota, and Minnesota, with 10 or more years of unregulated peak-flow record, were used to develop regional regression equations for exceedance probabilities of 0.5, 0.20, 0.10, 0.04, 0.02, 0.01, and 0.002 using generalized least-squares techniques. Updated peak-flow frequency estimates for 262 streamflow-gaging stations were developed using data through 2009 and log-Pearson Type III procedures outlined by the Hydrology Subcommittee of the Interagency Advisory Committee on Water Data. An average generalized skew coefficient was determined for three hydrologic zones in North Dakota. A StreamStats web application was developed to estimate basin characteristics for the regional regression equation analysis. Methods for estimating a weighted peak-flow frequency for gaged sites and ungaged sites are presented.

The feasibility of detecting cerebral blood flow direction using the indocyanine green video angiography.

PubMed

Murai, Yasuo; Nakagawa, Syunsuke; Matano, Fumihiro; Shirokane, Kazutaka; Teramoto, Akira; Morita, Akio

2016-10-01

The intraoperative confirmation of blood flow direction is necessary in cerebral vascular surgery. Using indocyanine green video angiography (ICG-VAG) with the FLOW 800 system, we examined the transit time of the blood vessel of interest and semiquantitatively evaluated the delay time (T1/2max) from indocyanine green (ICG) injection into the donor artery in reconstructive surgery and the middle cerebral artery (MCA) in aneurysmal surgery. The direction of cerebral blood flow (CBF), which can often be confirmed by ICG-VAG, may be more difficult to determine with faster blood flow. Here, we report our findings regarding the feasibility of detecting CBF direction using the FLOW 800 system. Twenty patients undergoing superficial temporal artery (STA) to MCA anastomosis for carotid occlusive disease and 13 patients with a small MCA aneurysm clipping were evaluated using the T1/2max, semiquantitative method with the FLOW 800 system. In STA-MCA anastomosis cases, the regions of interest (ROIs) included: the proximal donor STA and a region more than 10 mm on the distal side of the donor STA near the anastomosis site. In MCA aneurysms, the ROIs included the proximal M1 and distal M2 sides of the MCA aneurysm. T1/2max was significantly shorter for the proximal sites compared to the distal sites for all subjects (ps < 0.01). T1/2max was shorter for all subjects in the proximal sites. The direction of CBF can be determined using the FLOW 800 system.

Sparse and Specific Coding during Information Transmission between Co-cultured Dentate Gyrus and CA3 Hippocampal Networks

PubMed Central

Poli, Daniele; Thiagarajan, Srikanth; DeMarse, Thomas B.; Wheeler, Bruce C.; Brewer, Gregory J.

2017-01-01

To better understand encoding and decoding of stimulus information in two specific hippocampal sub-regions, we isolated and co-cultured rat primary dentate gyrus (DG) and CA3 neurons within a two-chamber device with axonal connectivity via micro-tunnels. We tested the hypothesis that, in these engineered networks, decoding performance of stimulus site information would be more accurate when stimuli and information flow occur in anatomically correct feed-forward DG to CA3 vs. CA3 back to DG. In particular, we characterized the neural code of these sub-regions by measuring sparseness and uniqueness of the responses evoked by specific paired-pulse stimuli. We used the evoked responses in CA3 to decode the stimulation sites in DG (and vice-versa) by means of learning algorithms for classification (support vector machine, SVM). The device was placed over an 8 × 8 grid of extracellular electrodes (micro-electrode array, MEA) in order to provide a platform for monitoring development, self-organization, and improved access to stimulation and recording at multiple sites. The micro-tunnels were designed with dimensions 3 × 10 × 400 μm allowing axonal growth but not migration of cell bodies and long enough to exclude traversal by dendrites. Paired-pulse stimulation (inter-pulse interval 50 ms) was applied at 22 different sites and repeated 25 times in each chamber for each sub-region to evoke time-locked activity. DG-DG and CA3-CA3 networks were used as controls. Stimulation in DG drove signals through the axons in the tunnels to activate a relatively small set of specific electrodes in CA3 (sparse code). CA3-CA3 and DG-DG controls were less sparse in coding than CA3 in DG-CA3 networks. Using all target electrodes with the three highest spike rates (14%), the evoked responses in CA3 specified each stimulation site in DG with optimum uniqueness of 64%. Finally, by SVM learning, these evoked responses in CA3 correctly decoded the stimulation sites in DG for 43% of the trials, significantly higher than the reverse, i.e., how well-recording in DG could predict the stimulation site in CA3. In conclusion, our co-cultured model for the in vivo DG-CA3 hippocampal network showed sparse and specific responses in CA3, selectively evoked by each stimulation site in DG. PMID:28321182

Selection, Identification, and Binding Mechanism Studies of an ssDNA Aptamer Targeted to Different Stages of E. coli O157:H7.

PubMed

Zou, Ying; Duan, Nuo; Wu, Shijia; Shen, Mofei; Wang, Zhouping

2018-06-06

Enterohemorrhagic Escherichia coli O157:H7 ( E. coli O157:H7) is known as an important food-borne pathogen related to public health. In this study, aptamers which could bind to different stages of E. coli O157:H7 (adjustment phase, log phase, and stationary phase) with high affinity and specificity were obtained by the whole cell-SELEX method through 14 selection rounds including three counter-selection rounds. Altogether, 32 sequences were obtained, and nine families were classified to select the optimal aptamer. To analyze affinity and specificity by flow cytometer, an ssDNA aptamer named Apt-5 was picked out as the optimal aptamer that recognizes different stages of E. coli O157:H7 specifically with the K d value of 9.04 ± 2.80 nM. In addition, in order to study the binding mechanism, target bacteria were treated by proteinase K and trypsin, indicating that the specific binding site is not protein on the cell membrane. Furthermore, when we treated E. coli O157:H7 with EDTA, the result showed that the binding site might be lipopolysaccharide (LPS) on the outer membrane of E. coli O157:H7.

I-domain of lymphocyte function-associated antigen-1 mediates rolling of polystyrene particles on ICAM-1 under flow.

PubMed

Eniola, A Omolola; Krasik, Ellen F; Smith, Lee A; Song, Gang; Hammer, Daniel A

2005-11-01

In their active state, beta(2)-integrins, such as LFA-1, mediate the firm arrest of leukocytes by binding intercellular adhesion molecules (ICAMs) expressed on endothelium. Although the primary function of LFA-1 is assumed to be the ability to mediate firm adhesion, recent work has shown that LFA-1 can contribute to cell tethering and rolling under hydrodynamic flow, a role previously largely attributed to the selectins. The inserted (I) domain of LFA-1 has recently been crystallized in the wild-type (wt) and locked-open conformations and has been shown to, respectively, support rolling and firm adhesion under flow when expressed in alpha(L)beta(2) heterodimers or as isolated domains on cells. Here, we report results from cell-free adhesion assays where wt I-domain-coated polystyrene particles were allowed to interact with ICAM-1-coated surfaces in shear flow. We show that wt I-domain can independently mediate the capture of particles from flow and support their rolling on ICAM-1 surfaces in a manner similar to how carbohydrate-selectin interactions mediate rolling. Adhesion is specific and blocked by appropriate antibodies. We also show that the rolling velocity of I-domain-coated particles depends on the wall shear stress in flow chamber, I-domain site density on microsphere surfaces, and ICAM-1 site density on substrate surfaces. Furthermore, we show that rolling is less sensitive to wall shear stress and ICAM-1 substrate density at high density of I-domain on the microsphere surface. Computer simulations using adhesive dynamics can recreate bead rolling dynamics and show that the mechanochemical properties of ICAM-1-I-domain interactions are similar to those of carbohydrate-selectin interactions. Understanding the biophysics of adhesion mediated by the I-domain of LFA-1 can elucidate the complex roles this integrin plays in leukocyte adhesion in inflammation.

Effect of climate change on environmental flow indicators in the narew basin, poland.

PubMed

Piniewski, Mikołaj; Laizé, Cédric L R; Acreman, Michael C; Okruszko, Tomasz; Schneider, Christof

2014-01-01

Environmental flows-the quantity of water required to maintain a river ecosystem in its desired state-are of particular importance in areas of high natural value. Water-dependent ecosystems are exposed to the risk of climate change through altered precipitation and evaporation. Rivers in the Narew basin in northeastern Poland are known for their valuable river and wetland ecosystems, many of them in pristine or near-pristine condition. The objective of this study was to assess changes in the environmental flow regime of the Narew river system, caused by climate change, as simulated by hydrological models with different degrees of physical characterization and spatial aggregation. Two models were assessed: the river basin scale model Soil and Water Assessment Tool (SWAT) and the continental model of water availability and use WaterGAP. Future climate change scenarios were provided by two general circulation models coupled with the A2 emission scenario: IPSL-CM4 and MIROC3.2. To assess the impact of climate change on environmental flows, a method based conceptually on the "range of variability" approach was used. The results indicate that the environmental flow regime in the Narew basin is subject to climate change risk, whose magnitude and spatial variability varies with climate model and hydrological modeling scale. Most of the analyzed sites experienced moderate impacts for the Generic Environmental Flow Indicator (GEFI), the Floodplain Inundation Indicator, and the River Habitat Availability Indicator. The consistency between SWAT and WaterGAP for GEFI was medium: in 55 to 66% of analyzed sites, the models suggested the same level of impact. Hence, we suggest that state-of-the-art, high-resolution, global- or continental-scale models, such as WaterGAP, could be useful tools for water management decision-makers and wetland conservation practitioners, whereas models such as SWAT should serve as a complementary tool for more specific, smaller-scale, local assessments. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Colonization dynamics of biofilm-associated ciliate morphotypes at different flow velocities.

PubMed

Risse-Buhl, Ute; Küsel, Kirsten

2009-01-01

The impact of flow velocity on initial ciliate colonization dynamics on surfaces were studied in the third order Ilm stream (Thuringia, Germany) at a slow flowing site (0.09ms(-1)) and two faster flowing sites (0.31ms(-1)) and in flow channels at 0.05, 0.4, and 0.8ms(-1). At the slow flowing stream site, surfaces were rapidly colonized by ciliates with up to 60 cells cm(-2) after 24h. In flow channels, the majority of suspended ciliates and inorganic matter accumulated at the surface within 4.5h at 0.05ms(-1). At 0.4ms(-1) the increase in ciliate abundance in the biofilm was highest between 72 and 168h at about 3 cells cm(-2)h(-1). Faster flow velocities were tolerated by vagile flattened ciliates that live in close contact to the surface. Vagile flattened and round filter feeders preferred biofilms at slow flow velocities. Addition of inorganic particles (0, 0.6, and 7.3mgcm(-2)) did not affect ciliate abundance in flow channel biofilms, but small ciliate species dominated and number of species was lowest (16 species cm(-2)) in biofilms at high sediment content. Although different morphotypes dominated the communities at contrasting flow velocities, all functional groups contributed to initial biofilm communities implementing all trophic links within the microbial loop.

Estimates of streamflow characteristics for selected small streams, Baker River basin, Washington

USGS Publications Warehouse

Williams, John R.

1987-01-01

Regression equations were used to estimate streamflow characteristics at eight ungaged sites on small streams in the Baker River basin in the North Cascade Mountains, Washington, that could be suitable for run-of-the-river hydropower development. The regression equations were obtained by relating known streamflow characteristics at 25 gaging stations in nearby basins to several physical and climatic variables that could be easily measured in gaged or ungaged basins. The known streamflow characteristics were mean annual flows, 1-, 3-, and 7-day low flows and high flows, mean monthly flows, and flow duration. Drainage area and mean annual precipitation were not the most significant variables in all the regression equations. Variance in the low flows and the summer mean monthly flows was reduced by including an index of glacierized area within the basin as a third variable. Standard errors of estimate of the regression equations ranged from 25 to 88%, and the largest errors were associated with the low flow characteristics. Discharge measurements made at the eight sites near midmonth each month during 1981 were used to estimate monthly mean flows at the sites for that period. These measurements also were correlated with concurrent daily mean flows from eight operating gaging stations. The correlations provided estimates of mean monthly flows that compared reasonably well with those estimated by the regression analyses. (Author 's abstract)

The scale of hydrothermal circulation of the Iheya-North field inferred from intensive heat flow measurements and ocean drilling

NASA Astrophysics Data System (ADS)

Masaki, Y.; Kinoshita, M.; Yamamoto, H.; Nakajima, R.; Kumagai, H.; Takai, K.

2014-12-01

Iheya-North hydrothermal field situated in the middle Okinawa trough backarc basin is one of the largest ongoing Kuroko deposits in the world. Active chimneys as well as diffuse ventings (maximum fluid temperature 311 °C) have been located and studied in detail through various geological and geophysical surveys. To clarify the spatial scale of the hydrothermal circulation system, intensive heat flow measurements were carried out and ~100 heat flow data in and around the field from 2002 to 2014. In 2010, Integrated Ocean Drilling Program (IODP) Expedition 331 was carried out, and subbottom temperature data were obtained around the hydrothermal sites. During the JAMSTEC R/V Kaiyo cruise, KY14-01 in 2014, Iheya-North "Natsu" and "Aki" hydrothermal fields were newly found. The Iheya-Noth "Natsu" and "Aki" sites are located 1.2 km and 2.6 km south from the Iheya-North original site, respectively, and the maximum venting fluid temperature was 317 °C. We obtained one heat flow data at the "Aki" site. The value was 17 W/m2. Currently, the relationship between these hydrothermal sites are not well known. Three distinct zones are identified by heat flow values within 3 km from the active hydrothermal field. They are high-heat flow zone (>1 W/m2; HHZ), moderate-heat-flow zone (1-0.1 W/m2; MHZ); and low-heat-flow zone (<0.1 W/m2; LHZ). With increasing distance east of the HHZ, heat flow gradually decreases towards MHZ and LHZ. In the LHZ, temperature at 37m below the seafloor (mbsf) was 6 °C, that is consistent with the surface low heat flow suggesting the recharge of seawater. However, between 70 and 90 mbsf, the coarser sediments were cored, and temperature increased from 25 °C to 40°C. The temperature was 905°C at 151 mbsf, which was measured with thermoseal strips. The low thermal gradient in the upper 40 m suggests downward fluid flow. We infer that a hydrothermal circulation in the scale of ~1.5 km horizontal vs. ~a few hundred meters vertical.

Contaminant concentration versus flow velocity: drivers of biodegradation and microbial growth in groundwater model systems.

PubMed

Grösbacher, Michael; Eckert, Dominik; Cirpka, Olaf A; Griebler, Christian

2018-06-01

Aromatic hydrocarbons belong to the most abundant contaminants in groundwater systems. They can serve as carbon and energy source for a multitude of indigenous microorganisms. Predictions of contaminant biodegradation and microbial growth in contaminated aquifers are often vague because the parameters of microbial activity in the mathematical models used for predictions are typically derived from batch experiments, which don't represent conditions in the field. In order to improve our understanding of key drivers of natural attenuation and the accuracy of predictive models, we conducted comparative experiments in batch and sediment flow-through systems with varying concentrations of contaminant in the inflow and flow velocities applying the aerobic Pseudomonas putida strain F1 and the denitrifying Aromatoleum aromaticum strain EbN1. We followed toluene degradation and bacterial growth by measuring toluene and oxygen concentrations and by direct cell counts. In the sediment columns, the total amount of toluene degraded by P. putida F1 increased with increasing source concentration and flow velocity, while toluene removal efficiency gradually decreased. Results point at mass transfer limitation being an important process controlling toluene biodegradation that cannot be assessed with batch experiments. We also observed a decrease in the maximum specific growth rate with increasing source concentration and flow velocity. At low toluene concentrations, the efficiencies in carbon assimilation within the flow-through systems exceeded those in the batch systems. In all column experiments the number of attached cells plateaued after an initial growth phase indicating a specific "carrying capacity" depending on contaminant concentration and flow velocity. Moreover, in all cases, cells attached to the sediment dominated over those in suspension, and toluene degradation was performed practically by attached cells only. The observed effects of varying contaminant inflow concentration and flow velocity on biodegradation could be captured by a reactive-transport model. By monitoring both attached and suspended cells we could quantify the release of new-grown cells from the sediments to the mobile aqueous phase. Studying flow velocity and contaminant concentrations as key drivers of contaminant transformation in sediment flow-through microcosms improves our system understanding and eventually the prediction of microbial biodegradation at contaminated sites.

AMS analysis and flow source relationship of lava flows and ignimbrites from the eastern Trans-Mexican Volcanic Belt, Mexico

NASA Astrophysics Data System (ADS)

Caballero, C. I.; Alva-Valdivia, L. M.; Morales-Barrera, W.; Rodríguez, S. R.

2013-05-01

The results of an AMS analysis carried on 36 sites from a late Miocene - Holocene volcanic stratigraphic sequence from the eastern Trans-Mexican Volcanic Belt is presented. 22 sites (450 samples) belong to lava flows, mainly of basaltic composition, from different emission centers from the Xalapa Monogenitc Volcanic Field, (Rodríguez et al 2010, González-Mercado, 2005), "Cofre de Perote Vent Cluster" (CPVC), "Naolinco Volcanic Field" (NVF), (Siebert and Carrasco-Núñez, 2002), and the Chiconquiaco-Palma Sola volcanic complex (López-Infanzón, 1991; Ferrari et al., 2005). 14 sites belong to the widely distributed El Castillo rhyolitic ignimbrite dated 2.44 to 2.21 Ma (Morales-Barrera, 2009) which is a non-welded to welded ignimbrite. AMS measurements were performed with a KLY2 Kappabridge and processed with Anisoft software using Jelinek statistics. Sometimes a density distribution analysis was also performed when magnetic fabric showed more dispersed distribution patterns. AMS ellipsoids from basalt sites show mostly prolate shapes, while those from ignimbrites show mostly oblate shapes, which may partly due to magnetic mineralogy and also to flow dynamics. Flow directions were mostly obtained from the imbrication angle of magnetic foliation (evaluated from kmin axis mean as corresponding to its pole) and considering the symmetry of the axes distribution. Flow direction inferences are discussed in relation with flow source when it is clearly evident from geologic field observations, as it is usually the case with basalt lava flows. While in ignimbrites, flow inferences from petrographic and facies distributions are compared with AMS flow inferences, showing agreement between them in some cases but not in others, may be due to local tilting occurring after ignimbrite emplacement.

Debris exhaust system

DOEpatents

McBride, Donald D.; Bua, Dominic; Domankevitz, Yacov; Nishioka, Norman

1998-01-01

A debris removal system removes debris from a work site by flowing fluid away from the work site toward the periphery of a structure. The fluid flow can be kept constant around the periphery so that debris is removed evenly. The structure can have a reduced cross section between the fluid inlet and the work site so that the resulting increased fluid velocity works to prevent debris from escaping.

Debris exhaust system

DOEpatents

McBride, D.D.; Bua, D.; Domankevitz, Y.; Nishioka, N.

1998-06-23

A debris removal system removes debris from a work site by flowing fluid away from the work site toward the periphery of a structure. The fluid flow can be kept constant around the periphery so that debris is removed evenly. The structure can have a reduced cross section between the fluid inlet and the work site so that the resulting increased fluid velocity works to prevent debris from escaping. 9 figs.

Evidence for specific annexin I-binding proteins on human monocytes.

PubMed Central

Goulding, N J; Pan, L; Wardwell, K; Guyre, V C; Guyre, P M

1996-01-01

Recombinant human annexin I and a monoclonal antibody specific for this protein (mAb 1B) were used to investigate surface binding of this member of the annexin family of proteins to peripheral blood monocytes. Flow cytometric analysis demonstrated trypsin-sensitive, saturable binding of annexin I to human peripheral blood monocytes but not to admixed lymphocytes. A monoclonal antibody that blocks the anti-phospholipase activity of annexin I also blocked its binding to monocytes. These findings suggest the presence of specific binding sites on monocytes. Furthermore, surface iodination, immunoprecipitation and SDS/PAGE analysis were used to identify two annexin I-binding proteins on the surface of monocytes with molecular masses of 15 kDa and 18 kDa respectively. The identification and characterization of these annexin I-binding molecules should help us to better understand the specific interactions of annexin I with monocytes that lead to down-regulation of pro-inflammatory cell functions. PMID:8687405

Site-specific O-glycosylation of N-terminal serine residues by polypeptide GalNAc-transferase 2 modulates human δ-opioid receptor turnover at the plasma membrane.

PubMed

Lackman, Jarkko J; Goth, Christoffer K; Halim, Adnan; Vakhrushev, Sergey Y; Clausen, Henrik; Petäjä-Repo, Ulla E

2018-01-01

G protein-coupled receptors (GPCRs) are an important protein family of signalling receptors that govern a wide variety of physiological functions. The capacity to transmit extracellular signals and the extent of cellular response are largely determined by the amount of functional receptors at the cell surface that is subject to complex and fine-tuned regulation. Here, we demonstrate that the cell surface expression level of an inhibitory GPCR, the human δ-opioid receptor (hδOR) involved in pain and mood regulation, is modulated by site-specific N-acetylgalactosamine (GalNAc) -type O-glycosylation. Importantly, we identified one out of the 20 polypeptide GalNAc-transferase isoforms, GalNAc-T2, as the specific regulator of O-glycosylation of Ser6, Ser25 and Ser29 in the N-terminal ectodomain of the receptor. This was demonstrated by in vitro glycosylation assays using peptides corresponding to the hδOR N-terminus, Vicia villosa lectin affinity purification of receptors expressed in HEK293 SimpleCells capable of synthesizing only truncated O-glycans, GalNAc-T edited cell line model systems, and site-directed mutagenesis of the putative O-glycosylation sites. Interestingly, a single-nucleotide polymorphism, at residue 27 (F27C), was found to alter O-glycosylation of the receptor in efficiency as well as in glycosite usage. Furthermore, flow cytometry and cell surface biotinylation assays using O-glycan deficient CHO-ldlD cells revealed that the absence of O-glycans results in decreased receptor levels at the plasma membrane due to enhanced turnover. In addition, mutation of the identified O-glycosylation sites led to a decrease in the number of ligand-binding competent receptors and impaired agonist-mediated inhibition of cyclic AMP accumulation in HEK293 cells. Thus, site-specific O-glycosylation by a selected GalNAc-T isoform can increase the stability of a GPCR, in a process that modulates the constitutive turnover and steady-state levels of functional receptors at the cell surface. Copyright © 2017 Elsevier Inc. All rights reserved.

Occurrence and distribution of fecal indicator bacteria, and physical and chemical indicators of water quality in streams receiving discharge from Dallas/Fort Worth International Airport and vicinity, North-Central Texas, 2008

USGS Publications Warehouse

Harwell, Glenn R.; Mobley, Craig A.

2009-01-01

This report, done by the U.S. Geological Survey in cooperation with Dallas/Fort Worth International (DFW) Airport in 2008, describes the occurrence and distribution of fecal indicator bacteria (fecal coliform and Escherichia [E.] coli), and the physical and chemical indicators of water quality (relative to Texas Surface Water Quality Standards), in streams receiving discharge from DFW Airport and vicinity. At sampling sites in the lower West Fork Trinity River watershed during low-flow conditions, geometric mean E. coli counts for five of the eight West Fork Trinity River watershed sampling sites exceeded the Texas Commission on Environmental Quality E. coli criterion, thus not fully supporting contact recreation. Two of the five sites with geometric means that exceeded the contact recreation criterion are airport discharge sites, which here means that the major fraction of discharge at those sites is from DFW Airport. At sampling sites in the Elm Fork Trinity River watershed during low-flow conditions, geometric mean E. coli counts exceeded the geometric mean contact recreation criterion for seven (four airport, three non-airport) of 13 sampling sites. Under low-flow conditions in the lower West Fork Trinity River watershed, E. coli counts for airport discharge sites were significantly different from (lower than) E. coli counts for non-airport sites. Under low-flow conditions in the Elm Fork Trinity River watershed, there was no significant difference between E. coli counts for airport sites and non-airport sites. During stormflow conditions, fecal indicator bacteria counts at the most downstream (integrator) sites in each watershed were considerably higher than counts at those two sites during low-flow conditions. When stormflow sample counts are included with low-flow sample counts to compute a geometric mean for each site, classification changes from fully supporting to not fully supporting contact recreation on the basis of the geometric mean contact recreation criterion. All water temperature measurements at sampling sites in the lower West Fork Trinity River watershed were less than the maximum criterion for water temperature for the lower West Fork Trinity segment. Of the measurements at sampling sites in the Elm Fork Trinity River watershed, 95 percent were less than the maximum criterion for water temperature for the Elm Fork Trinity River segment. All dissolved oxygen concentrations were greater than the minimum criterion for stream segments classified as exceptional aquatic life use. Nearly all pH measurements were within the pH criterion range for the classified segments in both watersheds, except for those at one airport site. For sampling sites in the lower West Fork Trinity River watershed, all annual average dissolved solids concentrations were less than the maximum criterion for the lower West Fork Trinity segment. For sampling sites in the Elm Fork Trinity River, nine of the 13 sites (six airport, three non-airport) had annual averages that exceeded the maximum criterion for that segment. For ammonia, 23 samples from 12 different sites had concentrations that exceeded the screening level for ammonia. Of these 12 sites, only one non-airport site had more than the required number of exceedances to indicate a screening level concern. Stormflow total suspended solids concentrations were significantly higher than low-flow concentrations at the two integrator sites. For sampling sites in the lower West Fork Trinity River watershed, all annual average chloride concentrations were less than the maximum annual average chloride concentration criterion for that segment. For the 13 sampling sites in the Elm Fork Trinity River watershed, one non-airport site had an annual average concentration that exceeded the maximum annual average chloride concentration criterion for that segment.

Low-flow characteristics of Virginia streams

USGS Publications Warehouse

Austin, Samuel H.; Krstolic, Jennifer L.; Wiegand, Ute

2011-01-01

Low-flow annual non-exceedance probabilities (ANEP), called probability-percent chance (P-percent chance) flow estimates, regional regression equations, and transfer methods are provided describing the low-flow characteristics of Virginia streams. Statistical methods are used to evaluate streamflow data. Analysis of Virginia streamflow data collected from 1895 through 2007 is summarized. Methods are provided for estimating low-flow characteristics of gaged and ungaged streams. The 1-, 4-, 7-, and 30-day average streamgaging station low-flow characteristics for 290 long-term, continuous-record, streamgaging stations are determined, adjusted for instances of zero flow using a conditional probability adjustment method, and presented for non-exceedance probabilities of 0.9, 0.8, 0.7, 0.6, 0.5, 0.4, 0.3, 0.2, 0.1, 0.05, 0.02, 0.01, and 0.005. Stream basin characteristics computed using spatial data and a geographic information system are used as explanatory variables in regional regression equations to estimate annual non-exceedance probabilities at gaged and ungaged sites and are summarized for 290 long-term, continuous-record streamgaging stations, 136 short-term, continuous-record streamgaging stations, and 613 partial-record streamgaging stations. Regional regression equations for six physiographic regions use basin characteristics to estimate 1-, 4-, 7-, and 30-day average low-flow annual non-exceedance probabilities at gaged and ungaged sites. Weighted low-flow values that combine computed streamgaging station low-flow characteristics and annual non-exceedance probabilities from regional regression equations provide improved low-flow estimates. Regression equations developed using the Maintenance of Variance with Extension (MOVE.1) method describe the line of organic correlation (LOC) with an appropriate index site for low-flow characteristics at 136 short-term, continuous-record streamgaging stations and 613 partial-record streamgaging stations. Monthly streamflow statistics computed on the individual daily mean streamflows of selected continuous-record streamgaging stations and curves describing flow-duration are presented. Text, figures, and lists are provided summarizing low-flow estimates, selected low-flow sites, delineated physiographic regions, basin characteristics, regression equations, error estimates, definitions, and data sources. This study supersedes previous studies of low flows in Virginia.

Relation of local scour to hydraulic properties at selected bridges in New York

USGS Publications Warehouse

Butch, Gerard K.; ,

1993-01-01

Hydraulic properties, bridge geometry, and basin characteristics at 31 bridges in New York are being investigated to identify factors that affect local scour. Streambed elevations measured by the U.S. Geological Survey and New York State Department of Transportation are used to estimate local-scour depth. Data that show zero or minor scour were included in the analysis to decrease bias and to estimate hydraulic properties related to local scour. The maximum measured local scour at the 31 bridges for a single peak flow was 5.4 feet, but the deepening of scour holes at two sites to 6.1 feet and 7.8 feet by multiple peak flows could indicate that the number or duration of high flows is a factor. Local scour at a pier generally increased as the recurrence interval (magnitude) of the discharge increased, but the correlation between local-scour depth and recurrence interval was inconsistent among study sites. For example, flows with a 2-year recurrence interval produced 2 feet of local scour at two sites, whereas a flow with a recurrence interval produced 2 feet of local scour at two sites, whereas a flow with a recurrence interval of 50 years produced only 0.5 feet of local scour at another site. Local-scour depth increased with water depth, stream velocity, and Reynolds number but did not correlate well with bed-material size, Froude number, pier geometry, friction slope, or several other hydraulic and basin characteristics.

Genetic structure of eelgrass Zostera marina meadows in an embayment with restricted water flow

USGS Publications Warehouse

Munoz-Salazar, R.; Talbot, S.L.; Sage, G.K.; Ward, D.H.; Cabello-Pasini, Alejandro

2006-01-01

Genetic structure of the seagrass Zostera marina in a coastal lagoon with restricted water flow, and with heterogeneous water residence times and oceanographic characteristics, was assessed using 8 polymorphic microsatellite loci. Analyses of genetic differentiation (??) and Bayesian clustering suggested that the Z. marina population in San Quintin Bay (SQB) is genetically substructured, with at least 4 genetically different groups: (1) West Head, (2) Mouth, (3) East Arm, and (4) East Head. The greatest ?? value was observed between the most distant sites (?? = 0.095). The lowest values were found among sites closest to the mouth of the coastal lagoon (?? = 0.000 to 0.009). The maximum likelihood approach showed that the sites at the mouth have a mixed pattern of gene flow without a unidirectional pattern. In contrast, there was a clear pattern of asymmetrical gene flow from the mouth towards the West Head. These results suggested that the restriction of water flow at the heads, current pattern, and the distance between sites can reduce genetic flow and promote genetic differences within Z. marina meadows in small water embayments such as SQB. Though the population is genetically substructured and a 14 % decline in cover has been detected, this study did not show evidence of a recent genetic bottleneck. In contrast, mouth sites have experienced a recent expansion in their population size, and also perhaps a recent influx of rare alleles from genetically distinct immigrants. ?? Inter-Research 2006.

The Lymphocyte Function–associated Antigen 1 I Domain Is a Transient Binding Module for Intercellular Adhesion Molecule (ICAM)-1 and ICAM-3 in Hydrodynamic Flow

PubMed Central

Knorr, Ruth; Dustin, Michael L.

1997-01-01

The I domain of lymphocyte function–associated antigen (LFA)-1 contains an intercellular adhesion molecule (ICAM)-1 and ICAM-3 binding site, but the relationship of this site to regulated adhesion is unknown. To study the adhesive properties of the LFA-1 I domain, we stably expressed a GPI-anchored form of this I domain (I-GPI) on the surface of baby hamster kidney cells. I-GPI cells bound soluble ICAM-1 (sICAM-1) with a low avidity and affinity. Flow cell experiments demonstrated a specific rolling interaction of I-GPI cells on bilayers containing purified full length ICAM-1 or ICAM-3. The LFA-1 activating antibody MEM-83, or its Fab fragment, decreased the rolling velocity of I-GPI cells on ICAM-1–containing membranes. In contrast, the interaction of I-GPI cells with ICAM-3 was blocked by MEM-83. Rolling of I-GPI cells was dependent on the presence of Mg2+. Mn2+ only partially substituted for Mg2+, giving rise to a small fraction of rolling cells and increased rolling velocity. This suggests that the I domain acts as a transient, Mg2+-dependent binding module that cooperates with another Mn2+-stimulated site in LFA-1 to give rise to the stable interaction of intact LFA-1 with ICAM-1. PMID:9271587

Field assessment of noncontact stream gauging using portable surface velocity radars (SVR)

NASA Astrophysics Data System (ADS)

Welber, Matilde; Le Coz, Jérôme; Laronne, Jonathan B.; Zolezzi, Guido; Zamler, Daniel; Dramais, Guillaume; Hauet, Alexandre; Salvaro, Martino

2016-02-01

The applicability of a portable, commercially available surface velocity radar (SVR) for noncontact stream gauging was evaluated through a series of field-scale experiments carried out in a variety of sites and deployment conditions. Comparisons with various concurrent techniques showed acceptable agreement with velocity profiles, with larger uncertainties close to the banks. In addition to discharge error sources shared with intrusive velocity-area techniques, SVR discharge estimates are affected by flood-induced changes in the bed profile and by the selection of a depth-averaged to surface velocity ratio, or velocity coefficient (α). Cross-sectional averaged velocity coefficients showed smaller fluctuations and closer agreement with theoretical values than those computed on individual verticals, especially in channels with high relative roughness. Our findings confirm that α = 0.85 is a valid default value, with a preferred site-specific calibration to avoid underestimation of discharge in very smooth channels (relative roughness ˜ 0.001) and overestimation in very rough channels (relative roughness > 0.05). Theoretically derived and site-calibrated values of α also give accurate SVR-based discharge estimates (within 10%) for low and intermediate roughness flows (relative roughness 0.001 to 0.05). Moreover, discharge uncertainty does not exceed 10% even for a limited number of SVR positions along the cross section (particularly advantageous to gauge unsteady flood flows and very large floods), thereby extending the range of validity of rating curves.

Numerical simulations of heat transfer through fractured rock for an enhanced geothermal system development in Seokmodo, Korea

NASA Astrophysics Data System (ADS)

Shin, Jiyoun; Kim, Kyung-Ho; Hyun, Yunjung; Lee, Kang-Keun

2010-05-01

Estimating the expected capacity and efficiency of energy is a crucial issue in the construction of geothermal plant. It is the lasting temperature of extracted geothermal water that determines the effectiveness of enhanced geothermal systems (EGS), so the heat transfer processes in geothermal reservoirs under site-specific geologic conditions should be understood first. The construction of the first geothermal plant in Korea is under planning in Seokmodo, where a few flowing artesian wells showing relatively high water temperature of around 70°C were discovered lately. The site of interest is a part of the island region, consisting of the reclaimed land surrounded by the sea and small mountains. Geothermal gradient measures approximately 45°C/km and the geothermal water is as saline as seawater. Geologic structure in this region is characterized by the fractured granite. In this study, thermo-hydrological (TH) numerical simulations for the temperature evolution in a fractured geothermal reservoir under the supposed injection-extraction operating conditions were carried out using TOUGH2. Multiple porosity model which is useful to calculate the transient interporosity flow in TH coupled heat transfer problem was used in simulations. Several fracture planes which had been investigated in the field were assigned to have highly permeable properties in order to avoid the averaging approximation and describe the dominant flow through the fractures. This heterogeneous model showed the rise of relatively hot geothermal water in the densely fractured region. The temperature of the extracted geothermal water also increased slowly for 50 years due to the rising flow through the fractures. The most sensitive factor which affects the underground thermal distribution and temperature of geothermal water was permeability of the medium. Change in permeabilities of rock and fracture within the range of 1 order might cause such an extreme change in the temperature of geothermal water that the measurement of the permeability should be performed through a very careful process in order to guarantee a reliable simulation. As the fracture spacing became narrower, overall thermal distribution appeared to be similar to that from EPM model. This suggests that EPM model, which is easy to design and takes less time, can be replaced for the densely fractured medium. Change in fracture aperture within the range of that of actual rocks did not cause a remarkable difference in temperature distribution, which means that measuring accuracy of the actual aperture value in rocks is relatively less important. This demonstrates that the distribution and the structure of fracture system make a great contribution to the whole simulation for fluid and heat flow mechanisms in geologic medium, and thus require an intensive geologic investigation for the fractures including strike and dip information, permeability and connecting relation. In addition, the simulation results show that the heterogeneous model can include the description for the significant fracture flow and it can be a practical tool for a site-specific simulation for EGS sites. This preliminary simulation was useful to estimate the scale of the geothermal reservoir and the energy potential in Seokmodo and it can be further expanded to a long-term simulation to predict the evolution of the geothermal reservoir under the potential EGS operations. Acknowledgement: This study was financially supported by KIGAM, KETEP and BK21.

Surface-Water and Groundwater Interactions along the Withlacoochee River, West-Central Florida

USGS Publications Warehouse

Trommer, J.T.; Yobbi, D.K.; McBride, W.S.

2009-01-01

A study of the Withlacoochee River watershed in west-central Florida was conducted from October 2003 to March 2007 to gain a better understanding of the hydrology and surface-water and groundwater interactions along the river. The Withlacoochee River originates in the Green Swamp area in north-central Polk County and flows northerly through seven counties, emptying into the Gulf of Mexico. This study includes only the part of the watershed located between the headwaters in the Green Swamp and the U.S. Geological Survey gaging station near Holder, Florida. The Withlacoochee River within the study area is about 108 miles long and drains about 1,820 square miles. The Withlacoochee River watershed is underlain by thick sequences of carbonate rock that are covered by thin surficial deposits of unconsolidated sand and sandy clay. The clay layer is breached in many places because of the karst nature of the underlying limestone, and the degree of confinement between the Upper Florida aquifer and the surficial aquifer is highly variable throughout the watershed. The potential for movement of water from the surface or shallow deposits to deeper deposits, or from deeper deposits to the shallow deposits, exists throughout the Withlacoochee River watershed. Water levels were higher in deeper Upper Floridan aquifer wells than in shallow Upper Floridan aquifer wells or surficial aquifer wells at 11 of 19 paired or nested well sites, indicating potential for discharge to the surface-water system. Water levels were higher in shallow Upper Floridan aquifer or surficial aquifer wells than in deeper Upper Floridan aquifer wells at five other sites, indicating potential for recharge to the deeper Upper Floridan aquifer. Water levels in the surficial aquifer and Upper Floridan aquifer wells at the remaining three sites were virtually the same, indicating little or no confinement at the sites. Potentiometric-surface maps of the Upper Floridan aquifer indicate the pattern of groundwater flow in the aquifer did not vary greatly from season to season during the study. Potentiometric contours indicate groundwater discharge to the river in the vicinity of Dade City and Lake Panasoffkee. During dry periods, groundwater from the underlying Upper Floridan aquifer contributed to the flow in the river. During wet periods, streamflow had additional contributions from runoff and input from tributaries. Groundwater has a greater effect on streamflow downstream from the Dade City station than upstream from the Dade City station because confinement between surficial deposits and the Upper Floridan aquifer is greater in the Green Swamp area than in downstream areas. Estimates of streamflow gains and losses were made along the Withlacoochee River during base-flow conditions in May 2004, April 2005, and April 2006. Base flow was higher in April 2005 than in May 2004 and April 2006. Consistent net seepage gains were identified in 16 of 20 subreaches analyzed during all seepage runs. The direction of exchange was variable in the remaining four subreaches. Low specific conductance, pH, and calcium concentrations in water from the Withlacoochee River near the headwater area indicated a surface-water system not directly connected to the Upper Floridan aquifer. Downstream from the Dade City station, higher specific conductance, pH, and calcium concentrations in the river water indicated an increasing influence of groundwater, and were similar to groundwater during low-flow conditions. Strontium isotope ratios indicate groundwater originates from shallow parts of the Upper Floridan aquifer in the upper reaches of the river, and from increasingly deeper parts of the aquifer in the downstream direction. Mean annual base-flow estimates also indicate increasing groundwater discharge to the river in the downstream direction. Mean annual base flow estimated using standard hydrograph separation method assumptions ranged from about 4.7 to 5.1 inches per year

Analysis of water flow paths: methodology and example calculations for a potential geological repository in Sweden.

PubMed

Werner, Kent; Bosson, Emma; Berglund, Sten

2006-12-01

Safety assessment related to the siting of a geological repository for spent nuclear fuel deep in the bedrock requires identification of potential flow paths and the associated travel times for radionuclides originating at repository depth. Using the Laxemar candidate site in Sweden as a case study, this paper describes modeling methodology, data integration, and the resulting water flow models, focusing on the Quaternary deposits and the upper 150 m of the bedrock. Example simulations identify flow paths to groundwater discharge areas and flow paths in the surface system. The majority of the simulated groundwater flow paths end up in the main surface waters and along the coastline, even though the particles used to trace the flow paths are introduced with a uniform spatial distribution at a relatively shallow depth. The calculated groundwater travel time, determining the time available for decay and retention of radionuclides, is on average longer to the coastal bays than to other biosphere objects at the site. Further, it is demonstrated how GIS-based modeling can be used to limit the number of surface flow paths that need to be characterized for safety assessment. Based on the results, the paper discusses an approach for coupling the present models to a model for groundwater flow in the deep bedrock.

Evidence for preferential flow through sandstone aquifers in Southern Wisconsin

USGS Publications Warehouse

Swanson, S.K.; Bahr, J.M.; Bradbury, K.R.; Anderson, K.M.

2006-01-01

Sandstones often escape extensive hydrogeologic characterization due to their high primary porosity and perceived homogeneity of permeability. This study provides evidence for laterally extensive, high permeability zones in the Tunnel City Group, an undeformed, Cambrian-aged sandstone unit that exists in the subsurface throughout much of central and southern Wisconsin, USA. Several discrete high-permeability zones were identified in boreholes using flow logging and slug tests, and the interconnectedness of the features was tested using a site-specific numerical model for springs in the region. Explicit incorporation of a high-permeability layer leads to improvements in the flux calibration over simulations that lack the features, thus supporting the hydraulic continuity of high-permeability zones in the sandstone aquifer over tens of kilometers. The results suggest that stratigraphically controlled heterogeneities like contrasts in lithology or bedding-plane fractures, which have been shown to strongly influence the flow of groundwater in more heterogeneous sedimentary rocks, may also deserve close examination in sandstone aquifers. ?? 2005 Elsevier B.V. All rights reserved.

Runoff-generated debris flows: observations and modeling of surge initiation, magnitude, and frequency

USGS Publications Warehouse

Kean, Jason W.; McCoy, Scott W.; Tucker, Gregory E.; Staley, Dennis M.; Coe, Jeffrey A.

2013-01-01

Runoff during intense rainstorms plays a major role in generating debris flows in many alpine areas and burned steeplands. Yet compared to debris flow initiation from shallow landslides, the mechanics by which runoff generates a debris flow are less understood. To better understand debris flow initiation by surface water runoff, we monitored flow stage and rainfall associated with debris flows in the headwaters of two small catchments: a bedrock-dominated alpine basin in central Colorado (0.06 km2) and a recently burned area in southern California (0.01 km2). We also obtained video footage of debris flow initiation and flow dynamics from three cameras at the Colorado site. Stage observations at both sites display distinct patterns in debris flow surge characteristics relative to rainfall intensity (I). We observe small, quasiperiodic surges at low I; large, quasiperiodic surges at intermediate I; and a single large surge followed by small-amplitude fluctuations about a more steady high flow at high I. Video observations of surge formation lead us to the hypothesis that these flow patterns are controlled by upstream variations in channel slope, in which low-gradient sections act as “sediment capacitors,” temporarily storing incoming bed load transported by water flow and periodically releasing the accumulated sediment as a debris flow surge. To explore this hypothesis, we develop a simple one-dimensional morphodynamic model of a sediment capacitor that consists of a system of coupled equations for water flow, bed load transport, slope stability, and mass flow. This model reproduces the essential patterns in surge magnitude and frequency with rainfall intensity observed at the two field sites and provides a new framework for predicting the runoff threshold for debris flow initiation in a burned or alpine setting.

Gas hydrate drilling transect across northern Cascadia margin - IODP Expedition 311

USGS Publications Warehouse

Riedel, M.; Collett, T.; Malone, M.J.; Collett, T.S.; Mitchell, M.; Guerin, G.; Akiba, F.; Blanc-Valleron, M.; Ellis, M.; Hashimoto, Y.; Heuer, V.; Higashi, Y.; Holland, M.; Jackson, P.D.; Kaneko, M.; Kastner, M.; Kim, J.-H.; Kitajima, H.; Long, P.E.; Malinverno, A.; Myers, Gwen E.; Palekar, L.D.; Pohlman, J.; Schultheiss, P.; Teichert, B.; Torres, M.E.; Trehu, A.M.; Wang, Jingyuan; Worthmann, U.G.; Yoshioka, H.

2009-01-01

A transect of four sites (U1325, U1326, U1327 and U1329) across the northern Cascadia margin was established during Integrated Ocean Drilling Program Expedition 311 to study the occurrence and formation of gas hydrate in accretionary complexes. In addition to the transect sites, a fifth site (U1328) was established at a cold vent with active fluid flow. The four transect sites represent different typical geological environments of gas hydrate occurrence across the northern Cascadia margin from the earliest occurrence on the westernmost first accreted ridge (Site U1326) to the eastward limit of the gas hydrate occurrence in shallower water (Site U1329). Expedition 311 complements previous gas hydrate studies along the Cascadia accretionary complex, especially ODP Leg 146 and Leg 204 by extending the aperture of the transect sampled and introducing new tools to systematically quantify the gas hydrate content of the sediments. Among the most significant findings of the expedition was the occurrence of up to 20 m thick sand-rich turbidite intervals with gas hydrate concentrations locally exceeding 50% of the pore space at Sites U1326 and U1327. Moreover, these anomalous gas hydrate intervals occur at unexpectedly shallow depths of 50-120 metres below seafloor, which is the opposite of what was expected from previous models of gas hydrate formation in accretionary complexes, where gas hydrate was predicted to be more concentrated near the base of the gas hydrate stability zone just above the bottom-simulating reflector. Gas hydrate appears to be mainly concentrated in turbidite sand layers. During Expedition 311, the visual correlation of gas hydrate with sand layers was clearly and repeatedly documented, strongly supporting the importance of grain size in controlling gas hydrate occurrence. The results from the transect sites provide evidence for a structurally complex, lithology-controlled gas hydrate environment on the northern Cascadia margin. Local shallow occurrences of high gas hydrate concentrations contradict the previous model of gas hydrate formation at an accretionary prism. However, long-lived fluid flow (part of the old model) is still required to explain the shallow high gas hydrate concentrations, although it is most likely not pervasive throughout the entire accretionary prism, but rather localized and focused by the tectonic processes. Differences in the fluid flow regime across all of the transect drill sites indicate site-specific and probably disconnected (compartmented) deeper fluid sources in the various parts of the accretionary prism. The data and future analyses will yield a better understanding of the geologic controls, evolution and ultimate fate of gas hydrate in an accretionary prism as an important contribution to the role of gas hydrate methane gas in slope stability and possibly in climate change. ?? The Geological Society of London 2009.

40 CFR 90.417 - Fuel flow measurement specifications.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 40 Protection of Environment 21 2013-07-01 2013-07-01 false Fuel flow measurement specifications... Gaseous Exhaust Test Procedures § 90.417 Fuel flow measurement specifications. (a) Fuel flow measurement is required only for raw testing. Fuel flow is allowed for dilute testing. (b) The fuel flow...

The Effect of Contact Area on the Fluid Flow-Fracture Specific Stiffness Relationship

NASA Astrophysics Data System (ADS)

Petrovitch, C.; Pyrak-Nolte, L. J.; Nolte, D. D.

2009-12-01

The integrity of subsurface CO2 sequestration sites can be compromised by the presence of mechanical discontinuities such as fractures, joints and faults. The ability to detect, seismically, and determine whether a discontinuity poses a risk, requires an understanding of the interrelationships among the mechanical, hydraulic and seismic properties of fractures rock. We performed a computational study to investigate the effect of fracture geometry on the relationship between fluid flow and fracture specific stiffness. The form of this relationship and the ability to scale it among different sample sizes provides a key link between the hydraulic and seismic response of fractures. In this study, model fracture topologies were simulated using the stratified continuum percolation method. This method constructs a hierarchical aperture distribution with a tunable spatial correlation length. Fractures with correlated and uncorrelated aperture distributions were used. The contact area across the fracture plane ranged from approximately 5% to 40%. The fracture specific stiffness was calculated by deforming each fracture numerically under a normal load and extracting the stiffness from the displacement-stress curves. Single-phase flow was calculated for each increment of stress by modeling the fracture topology as a network of elliptical pipes and solving the corresponding linear system of equations. We analyzed the relationship between fracture displacement and contact area and found that the correlation length associated with the contact area distribution enables a scaling relationship between displacement and contact area. The collapse of the fluid flow - stress relationship required use of standard percolation functional forms that use average aperture (cubic law), the void area fraction, and the correlation length of the contact area clusters. A final scaling relationship between fluid flow and fracture specific was found for the class of correlated fractures while a separate relationship was found for the uncorrelated fractures. By expanding the scaling parameters to include additional length scales, it may be possible to unify all of the flow-stiffness relationships, independent of geometry. Acknowledgments: The authors wish to acknowledge support of this work by the Geosciences Research Program, Office of Basic Energy Sciences US Department of Energy (DEFG02-97ER14785 08), the GeoMathematical Imaging Group at Purdue University and from the Computer Research Institute At Purdue University.

Ground-water flow in the shallow aquifer system at the Naval Weapons Station Yorktown, Virginia

USGS Publications Warehouse

Smith, Barry S.

2001-01-01

The Environmental Directorate of the Naval Weapons Station Yorktown, Virginia, is concerned about possible contamination of ground water at the Station. Ground water at the Station flows through a shallow system of layered aquifers and leaky confining units. The units of the shallow aquifer system are the Columbia aquifer, the Cornwallis Cave confining unit, the Cornwallis Cave aquifer, the Yorktown confining unit, and the Yorktown-Eastover aquifer. The Eastover-Calvert confining unit separates the shallow aquifer system from deeper confined aquifers beneath the Station. A three-dimensional, finite-difference, ground-water flow model was used to simulate steady-state ground-water flow of the shallow aquifer system in and around the Station. The model simulated ground-water flow from the peninsular drainage divide that runs across the Lackey Plain near the southern end of the Station north to King Creek and the York River and south to Skiffes Creek and the James River. The model was calibrated by minimizing the root mean square error between 4 7 measured and corresponding simulated water levels. The calibrated model was used to determine the ground-water budget and general directions of ground-water flow. A particle-tracking routine was used with the calibrated model to estimate groundwater flow paths, flow rates, and traveltimes from selected sites at the Station. Simulated ground-water flow velocities of the Station-area model were small beneath the interstream areas of the Lackey Plain and Croaker Flat, but increased outward toward the streams and rivers where the hydraulic gradients are larger. If contaminants from the land surface entered the water table at or near the interstream areas of the Station, where hydraulic gradients are smaller, they would migrate more slowly than if they entered closer to the streams or the shores of the rivers where gradients commonly are larger. The ground-water flow simulations indicate that some ground water leaks downward from the water table to the Yorktown confining unit and, where the confining unit is absent, to the Yorktown-Eastover aquifer. The velocities of advective-driven contaminants would decrease considerably when entering the Yorktown confining unit because the hydraulic conductivity of the confining unit is small compared to that of the aquifers. Any contaminants that moved with advective ground-water flow near the groundwater divide of the Lackey Plain would move relatively slowly because the hydraulic gradients are small there. The direction in which the contaminants would move, however, would be determined by precisely where the contaminants entered the water table. The model was not designed to accurately simulate ground-water flow paths through local karst features. Beneath Croaker Flat, ground water flows downward through the Columbia aquifer and the Yorktown confining unit into the Yorktown-Eastover aquifer. Analyses of the movement of simulated particles from two adjacent sites at Croaker Flat indicated that ground-water flow paths were similar at first but diverged and discharged to different tributaries of Indian Field Creek or to the York River. These simulations indicate that complex and possibly divergent flow paths and traveltimes are possible at the Station. Although the Station-area model is not detailed enough to simulate ground-water flow at the scales commonly used to track and remediate contaminants at specific sites, general concepts about possible contaminant migration at the Station can be inferred from the simulations.

Molecular Determinants for Substrate Interactions with the Glycine Transporter GlyT2.

PubMed

Carland, Jane E; Thomas, Michael; Mostyn, Shannon N; Subramanian, Nandhitha; O'Mara, Megan L; Ryan, Renae M; Vandenberg, Robert J

2018-03-21

Transporters in the SLC6 family play key roles in regulating neurotransmission and are the targets for a wide range of therapeutics. Important insights into the transport mechanisms and the specificity of drug interactions of SLC6 transporters have been obtained from the crystal structures of a bacterial homologue of the family, LeuT Aa , and more recently the Drosophila dopamine transporter and the human serotonin transporter. However, there is disputed evidence that the bacterial leucine transporter, LeuT Aa , contains two substrate binding sites that work cooperatively in the mechanism of transport, with the binding of a second substrate being required for the release of the substrate from the primary site. An alternate proposal is that there may be low affinity binding sites that serve to direct the flow of substrates to the primary site. We have used a combination of molecular dynamics simulations of substrate interactions with a homology model of GlyT2, together with radiolabeled amino acid uptake assays and electrophysiological analysis of wild-type and mutant transporters, to provide evidence that substrate selectivity of GlyT2 is determined entirely by the primary substrate binding site and, furthermore, if a secondary site exists then it is a low affinity nonselective amino acid binding site.

Relations among floodplain water levels, instream dissolved-oxygen conditions, and streamflow in the lower Roanoke River, North Carolina, 1997-2001

USGS Publications Warehouse

Bales, Jerad D.; Walters, Douglas A.

2004-01-01

The lower Roanoke River corridor in North Carolina contains a floodplain of national significance. Data from a network of 1 streamflow-measurement site, 13 river-stage sites, 13 floodplain water-level sites located along 4 transects, and 5 in situ water-quality monitoring sites were used to characterize temporal and spatial variations of floodplain and river water levels during 1997-2000 and to describe dissolved-oxygen conditions in the lower Roanoke River for the period 1998-2001. Major differences in the relation of floodplain inundation to flow occurred both among sites at a given transect and among transects. Several floodplain sites were inundated for the full range of flow conditions measured during the study. These included one site on the Big Swash transect (at about river kilometer 119); one site on the Broadneck Swamp transect (river kilometer 97), which was inundated 91 percent of the time during the study; one site on the Devils Gut transect (river kilometer 44), which was inundated throughout the study; and three sites on the Cow Swamp transect (near river kilometer 10). The relation of floodplain inundation depth to Roanoke River flow was highly variable among sites. There was no relation between flow and inundation depth at one of the Big Swash sites or at any of the four Cow Swamp sites. At two of the Big Swash transect sites, there was some relation between inundation depth and 10-day mean flow for flows greater than 700 cubic meters per second. A relatively strong relation between inundation depth and 10-day mean flow occurred at two of the Broadneck Swamp sites and, to a lesser degree, at two of the Devils Gut transect sites. There was much greater interannual variability in floodplain water levels, as represented by the difference between the maximum and minimum daily water level for a given calendar date during January-May and September-October than during the summer and late fall months. If data from this study are representative of long-term conditions, then this means that there is less uncertainty about what future floodplain water levels will be during June-August and November-December than during other months. Rates of ground-water decline, primarily due to evapotranspiration, were fairly similar at all sites, ranging from about 3 to 4 centimeters per day. For a 10-day mean flow of 300 cubic meters per second, an evaporative loss of 2 centimeters per day is equal to about 56 cubic meters per second. Evapotranspiration rates are much lower during the fall and winter months, so losses of river flow to floodplain processes likely are much lower during those months. The ground-water gradient at most sites was from the floodplain to the river, indicating a potential for ground-water movement into the river from the floodplain. At two of the Devils Gut sites, however, the water level often was higher in the river than in the floodplain when floodplain sites were not inundated. This indicates that there is a potential for river water to move as ground water from the river into the floodplain. It seems likely that this feature observed at the Devils Gut transect occurs elsewhere in the lower Roanoke River corridor. Dissolved-oxygen concentrations typically decrease with increasing distance from Roanoke Rapids Dam. During the 1998-2001 study period, the median dissolved-oxygen concentration at Halifax (river kilometer 187), the upstream-most station, was 8.4 milligrams per liter, and the median concentration at the downstream-most station (NC-45, bottom sensor; river kilometer 2.6) was 6.6 milligrams per liter. Several synoptic measurements of dissolved-oxygen concentration down the river identified the presence of a dissolved-oxygen sag in the vicinity of Halifax, with some recovery of concentrations between Halifax and about Scotland Neck at river kilometer 156. Data from the synoptic measurements also indicated that the greatest rate of dissolved-oxygen change with distance along the riv

Scour assessments and sediment-transport simulation for selected bridge sites in South Dakota

USGS Publications Warehouse

Niehus, C.A.

1996-01-01

Scour at bridges is a major concern in the design of new bridges and in the evaluation of structural stability of existing bridges. Equations for estimating pier, contraction, and abutment scour have been developed from numerous laboratory studies using sand-bed flumes, but little verification of these scour equations has been done for actual rivers with various bed conditions. This report describes the results of reconnaissance and detailed scour assessments and a sediment-transport simulation for selected bridge sites in South Dakota. Reconnaissance scour assessments were done during 1991 for 32 bridge sites. The reconnaissance assessments for each bridge site included compilation of general and structural data, field inspection to record and measure pertinent scour variables, and evaluation of scour susceptibility using various scour-index forms. Observed pier scour at the 32 sites ranged from 0 to 7 feet, observed contraction scour ranged from 0 to 4 feet, and observed abutment scour ranged from 0 to 10 feet. Thirteen bridge sites having high potential for scour were selected for detailed assessments, which were accomplished during 1992-95. These detailed assessments included prediction of scour depths for 2-, 100-, and 500-year flows using selected published scour equations; measurement of scour during high flows; comparison of measured and predicted scour; and identification of which scour equations best predict actual scour. The medians of predicted pier-scour depth at each of the 13 bridge sites (using 13 scour equations) ranged from 2.4 to 6.8 feet for the 2-year flows and ranged from 3.4 to 13.3 feet for the 500-year flows. The maximum pier scour measured during high flows ranged from 0 to 8.5 feet. Statistical comparison (Spearman rank correlation) of predicted pier-scour depths (using flow data col- lected during scour measurements) indicate that the Laursen, Shen (method b), Colorado State University, and Blench (method b) equations correlate closer with measured scour than do the other prediction equations. The predicted pier-scour depths using the Varzeliotis and Carstens equations have weak statistical rela- tions with measured scour depths. Medians of predicted pier-scour depth from the Shen (method a), Chitale, Bata, and Carstens equations are statistically equal to the median of measured pier-scour depths, based on the Wilcoxon signed-ranks test. The medians of contraction scour depth at each of the 13 bridge sites (using one equation) ranged from -0.1 foot for the 2- year flows to 23.2 feet for the 500-year flows. The maximum contraction scour measured during high flows ranged from 0 to 3.0 feet. The contraction- scour prediction equation substantially overestimated the scour depths in almost all comparisons with the measured scour depths. A significant reason for this discrepancy is due to the wide flood plain (as wide as 5,000 feet) at most of the bridge sites that were investigated. One possible way to reduce this effect for bridge design is to make a decision on what is the effective approach section and thereby limit the size of the bridge flow approach width. The medians of abutment-scour depth at each of the 13 bridge sites (using five equations) ranged from 8.2 to 16.5 feet for the 2-year flows and ranged from 5.7 to 41 feet for the 500-year flows. The maximum abutment scour measured during high flows ranged from 0 to 4.0 feet. The abutment-scour prediction equations also substantially overestimated the scour depths in almost all comparisons with the measured scour depths. The Liu and others (live bed) equation predicted abutment-scour depths substantially lower than the other four abutment-scour equations and closer to the actual measured scour depths. However, this equation at times predicted greater scour depths for 2-year flows than it did for 500-year flows, making its use highly questionable. Again, limiting the bridge flow approach width would produce more reasonable predicted abutment scour.

Effects of woody vegetation on overbank sand transport during a large flood, Rio Puerco, New Mexico

USGS Publications Warehouse

Griffin, Eleanor R.; Perignon, Mariela C.; Friedman, Jonathan M.; Tucker, Gregory E.

2014-01-01

Distributions of woody vegetation on floodplain surfaces affect flood-flow erosion and deposition processes. A large flood along the lower Rio Puerco, New Mexico, in August 2006 caused extensive erosion in a reach that had been sprayed with herbicide in September 2003 for the purpose of saltcedar (Tamarix spp.) control. Large volumes of sediment, including a substantial fraction of sand, were delivered to the reach downstream, which had not been treated with herbicide. We applied physically based, one-dimensional models of flow and suspended-sediment transport to compute volume concentrations of sand in suspension in floodplain flow at a site within the sprayed reach and at a site downstream from the sprayed reach. We computed the effects of drag on woody stems in reducing the skin friction shear stress, velocity of flow, and suspended-sand transport from open paths into patches of dense stems. Total flow and suspended-sand fluxes were computed for each site using well-constrained flood-flow depths, water-surface slopes, and measured shrub characteristics. Results show that flow in open paths carried high concentrations of sand in suspension with nearly uniform vertical distributions. Drag on woody floodplain stems reduced skin friction shear stresses by two orders of magnitude, yet sufficient velocities were maintained to transport sand more than 50 m into fields of dense, free-surface-penetrating stems. An increase in shrub canopy extent from 31% in the sprayed reach site to 49% in the downstream site was found to account for 69% of the computed decrease in discharge between the two sites. The results demonstrate the need to compute the spatial distribution of skin friction shear stress in order to effectively compute suspended-sand transport and to predict the fate of sediment and contaminants carried in suspension during large floods.

Macroinvertebrate biomonitoring in intermittent coastal plain streams impacted by animal agriculture.

PubMed

Davis, Stephanie; Golladay, Stephen W; Vellidis, George; Pringle, Catherine M

2003-01-01

Little attention has been given to the ecology of intermittent coastal plain streams in the southeastern United States, and it is not known whether available macroinvertebrate biomonitoring methods reliably detect degradation in these streams. This study compared differences in biomonitoring metrics between reference and agricultural streams, and between the flow period (January-April) and the intermittent flow period (May-December). Percentages of crustaceans, isopods, and Ephemeroptera-Plecoptera-Trichoptera (EPT) were significantly higher at the reference site than the two most impacted sites during the flow period, probably resulting from the abundance of leaf litter and lower temperatures. During this same period, the agriculturally impacted sites had a significantly higher percentage of dipterans--a group that thrives in the silty, nutrient-rich waters. Four metrics (percent Crustacea, Isopoda, Diptera, and EPT) had no overlap between values for the most impacted and the least impacted sites during the flow period, but no metrics were able to detect more discrete differences among sites. Sites were physically and biologically similar during the intermittent period when natural stresses (i.e., stagnant water, high temperatures, low dissolved oxygen) were high, with many metrics, such as percentages of dominant family, burrowers, chironomids, and dipterans becoming similar at all sites. Our findings indicate that development of a better understanding of invertebrate fauna in reference conditions and of the natural variation in intermittent streams is necessary to develop effective biomonitoring programs for these systems.

SITE TECHNOLOGY CAPSULE: FILTER FLOW TECHNOLOGY, INC. - COLLOID POLISHING FILTER METHOD

EPA Science Inventory

The Filter Flow Technology, Inc. (FFT) Coloid Polishing Filter Method (CPFM) was demonstrated at the U.S Department of Energy's (DOE) Rock Flats Plant (RFP) as part of the U.S. Environmental Protection Agency's (EPA) Superfund and Innovative Technology Evaluation (SITE) program. ...

The probability of lava inundation at the proposed and existing Kulani prison sites

USGS Publications Warehouse

Kauahikaua, J.P.; Trusdell, F.A.; Heliker, C.C.

1998-01-01

The State of Hawai`i has proposed building a 2,300-bed medium-security prison about 10 km downslope from the existing Kulani medium-security correctional facility. The proposed and existing facilities lie on the northeast rift zone of Mauna Loa, which last erupted in 1984 in this same general area. We use the best available geologic mapping and dating with GIS software to estimate the average recurrence interval between lava flows that inundate these sites. Three different methods are used to adjust the number of flows exposed at the surface for those flows that are buried to allow a better representation of the recurrence interval. Probabilities are then computed, based on these recurrence intervals, assuming that the data match a Poisson distribution. The probability of lava inundation for the existing prison site is estimated to be 11- 12% in the next 50 years. The probability of lava inundation for the proposed sites B and C are 2- 3% and 1-2%, respectively, in the same period. The probabilities are based on estimated recurrence intervals for lava flows, which are approximately proportional to the area considered. The probability of having to evacuate the prison is certainly higher than the probability of lava entering the site. Maximum warning times between eruption and lava inundation of a site are estimated to be 24 hours for the existing prison site and 72 hours for proposed sites B and C. Evacuation plans should take these times into consideration.

Microbial Ecology of a Regional Flow System: Deep, Aerobic, Fractured Rock Aquifers of the US Basin and Range (Invited)

NASA Astrophysics Data System (ADS)

Moser, D. P.; Hamilton-Brehm, S.; Zhang, G.; Fisher, J.; Hughes, K.; Wheatley, A.; Thomas, J.; Zavarin, M.; Roberts, S. K.; Kryder, L.; McRae, R.; Howard, W.; Walker, J.; Federwisch, R.; King, M.; Friese, R.; Grim, S.; Amend, J.; Momper, L.; Sherwood Lollar, B.; Onstott, T. C.

2013-12-01

Recent decades have revealed anaerobic microbial ecosystems across a range of deep, continental settings; however, aerobic, regional aquifers represent a little-studied habitat for deep life. The US' Basin and Range Province is an extensional zone defined by deep, interconnected fracture systems that span multiple hydrologic basins and host regional aquifers. Here we describe a multi-basin microbiological assessment, applied to the Death Valley Regional Flow System (DVRFS). Our group has surveyed more than thirty deep boreholes (~ 1,000 m depth average) and deeply-sourced springs across a ~170 km inferred flow path from recharge areas in volcanic and carbonate rock highlands of the Nevada National Security Site (NNSS) and the Spring Mountains to discharge zones in Oasis, Amargosa, and Death Valleys. DVRFS waters were characterized by temperatures of 30 - 50 oC and the presence of dissolved O2 (4 - 8 mg/L in the recharge areas and ~0.2 - 2 mg/L in the discharge zones). Planktonic microbial populations, as tracked by molecular DNA approaches (e.g. 454 pyrotag), were of low abundance (e.g. ~ 10e3 ~10e6 per mL) and dominated by Proteobacteria and Nitrospirae. Archaea were also present and dominated by novel Thaumarchaeotes. Patterns of microbial diversity and the hypothesis that these patterns may have utility for recognition of hydrologic connectivity were assessed by statistical tools. At the species level, cosmopolitan, system-wide, and flow-path-specific groupings of both bacteria and archaea were detected. Even when in close proximity to aerobic springs and wells, sites sampling deep, hot, anaerobic groundwaters possessed completely distinct microbial populations (e.g. dominance by Firmicutes, ANME, and predicted methanogens). Among methodological refinements developed from this work, the repeated sampling of one deep borehole over a month-long pump test revealed that well-bore-associated contaminants required several days of pumping for complete removal and enabled the identification of the specific depth that produced most of the water. Our results reveal details of microbial community structure for a common, but little-studied microbial ecosystem and support the concept that regional flow systems possess distinct microbial populations, consistent with their geochemical and hydrologic characteristics. These results generally support the concept that microbial populations may have utility as amplifiable tracers for tracking the connectivity of fluids in the subsurface.

Proposal for a model to assess the effect of seismic activity on the triggering of debris flows

NASA Astrophysics Data System (ADS)

Vidar Vangelsten, Bjørn; Liu, Zhongqiang; Eidsvig, Unni; Luna, Byron Quan; Nadim, Farrokh

2013-04-01

Landslide triggered by earthquakes is a serious threat for many communities around the world, and in some cases is known to have caused 25-50% of the earthquake fatalities. Seismic shaking can contribute to the triggering of debris flows either during the seismic event or indirectly by increasing the susceptibility of the slope to debris flow during intense rainfall in a period after the seismic event. The paper proposes a model to quantify both these effects. The model is based on an infinite slope formulation where precipitation and earthquakes influence the slope stability as follows: (1) During the shaking, the factor of safety is reduced due to cyclic pore pressure build-up where the cyclic pore pressure is modelled as a function of earthquake duration and intensity (measured as number of equivalent shear stress cycles and cyclic shear stress magnitude) and in-situ soil conditions (measured as average normalised shear stress). The model is calibrated using cyclic triaxial and direct simple shear (DSS) test data on clay and sand. (2) After the shaking, the factor of safety is modified using a combined empirical and analytical model that links observed earthquake induced changes in rainfall thresholds for triggering of debris flow to an equivalent reduction in soil shear strength. The empirical part uses data from past earthquakes to propose a conceptual model linking a site-specific reduction factor for rainfall intensity threshold (needed to trigger debris flows) to earthquake magnitude, distance from the epicentre and time period after the earthquake. The analytical part is a hydrological model for transient rainfall infiltration into an infinite slope in order to translate the change in rainfall intensity threshold into an equivalent reduction in soil shear strength. This is generalised into a functional form giving a site-specific shear strength reduction factor as function of earthquake history and soil conditions. The model is suitable for hazard and risk assessment at local and regional scale for earthquake and rainfall induced landslide. The research leading to these results has received funding from the European Community's Seventh Framework Programme [FP7/2007-2013] under grant agreement No 265138 New Multi-HAzard and MulTi-RIsK Assessment MethodS for Europe (MATRIX).

Hydrologic and water-quality conditions in the lower Apalachicola-Chattahoochee-Flint and parts of the Aucilla-Suwannee-Ochlockonee River basins in Georgia and adjacent parts of Florida and Alabama during drought conditions, July 2011

USGS Publications Warehouse

Gordon, Debbie W.; Peck, Michael F.; Painter, Jaime A.

2012-01-01

As part of the U.S. Department of the Interior sustainable water strategy, WaterSMART, the U.S. Geological Survey documented hydrologic and water-quality conditions in the lower Apalachicola-Chattahoochee-Flint and western and central Aucilla-Suwannee-Ochlockonee River basins in Alabama, Florida, and Georgia during low-flow conditions in July 2011. Moderate-drought conditions prevailed in this area during early 2011 and worsened to exceptional by June, with cumulative rainfall departures from the 1981-2010 climate normals registering deficits ranging from 17 to 27 inches. As a result, groundwater levels and stream discharges measured below median daily levels throughout most of 2011. Water-quality field properties including temperature, dissolved oxygen, specific conductance, and pH were measured at selected surface-water sites. Record-low groundwater levels measured in 12 of 43 surficial aquifer wells and 128 of 312 Upper Floridan aquifer wells during July 2011 underscored the severity of drought conditions in the study area. Most wells recorded groundwater levels below the median daily statistic, and 7 surficial aquifer wells were dry. Groundwater-level measurements taken in July 2011 were used to determine the potentiometric surface of the Upper Floridan aquifer. Groundwater generally flows to the south and toward streams except in reaches where streams discharge to the aquifer. The degree of connection between the Upper Floridan aquifer and streams decreases east of the Flint River where thick overburden hydraulically separates the aquifer from stream interaction. Hydraulic separation of the Upper Floridan aquifer from streams located east of the Flint River is shown by stream-stage altitudes that differ from groundwater levels measured in close proximity to streams. Most streams located in the study area during 2011 exhibited below normal flows (streamflows less than the 25th percentile), substantiating the severity of drought conditions that year. Streamflow and springflow measured at 202 sites along 2,122 stream miles during July 20-24, 2011, identified about 286 miles of losing streams, about 1,230 miles of gaining streams, and about 606 miles of streams with no flow. Water-quality field properties measured at 123 stream and 5 spring sites during July 2011 yielded water temperatures ranging from 20.6 to 31.6 degrees Celsius, dissolved oxygen ranging from 0.47 to 9.98 milligrams per liter, specific conductance ranging from 13 to 834 microsiemens per centimeter at 25 degrees Celsius, and pH ranging from 3.6 to 8.03.

Geology, hydrology, and results of tracer testing in the Galena-Platteville aquifer at a waste-disposal site near Byron, Illinois

USGS Publications Warehouse

Kay, Robert T.; Yeskis, Douglas J.; Prinos, Scott T.; Morrow, William S.; Vendl, Mark

1999-01-01

A study was conducted by the U.S. Geological Survey and the U.S. Environmental Protection Agency of the geohydrology of the dolomite bedrock at a waste-disposal site near Byron, Illinois. The study was designed to identify and characterize the flow pathways through the bedrock aquifer beneath the site. The geologic units of concern at the site are the Glenwood Formation of the Ancell Group, and the Platteville and Galena Groups. These deposits compose the Galena-Platteville aquifer and the underlying Harmony Hill Shale semiconfining unit. The Galena-Platteville aquifer is an unconfined aquifer. Geophysical logging, water levels, and aquifer-test data indicate the presence of interconnected, hydraulically active fractures in the middle of the Galena-Platteville aquifer (the upper flow pathway), and a second set of hydraulically active fractures (the lower flow pathway). The lower flow pathway may be present through much of the site. Few hydraulically active fractures are present in the upper part of the aquifer near the center of the site, but appear to be more numerous in the upper part of the aquifer in the western and northeastern parts of the site. Water-level data obtained during the tracer test indicate that pumping effects were present near the pumped wells. Pumping effects may have been present at several wells located along directions of identified fracture orientation from the pumped well. The upper part of the aquifer did not appear to be hydraulically well connected to the flow pathways supplying water to the pumped well. Large background changes in water levels obscured the effects of pumping and prevented calculation of aquifer properties. The velocity of the bromide tracer through the lower flow pathway under the hydraulic gradient resulting from the pumping was about 152 feet per day. Solution of the Darcy velocity equation results in a calculated effective porosity for this interval of 3.5 percent, indicating hydraulic interconnection between the fractures and the aquifer matrix. Ground-water velocity through the lower flow pathway was calculated to be 15.4 feet per day under hydrostatic conditions.

Description of borehole geophysical and geologist logs, Berks Sand Pit Superfund Site, Longswamp Township, Berks County, Pennsylvania

USGS Publications Warehouse

Low, Dennis J.; Conger, Randall W.

2003-01-01

Between October 2002 and January 2003, geophysical logging was conducted in six boreholes at the Berks Sand Pit Superfund Site, Longswamp Township, Berks County, Pa., to determine (1) the waterproducing zones, water-receiving zones, zones of vertical borehole flow, orientation of fractures, and borehole and casing depth; and (2) the hydraulic interconnection between the six boreholes and the site extraction well. The boreholes range in depth from 61 to 270 feet. Geophysical logging included collection of caliper, natural-gamma, single-point-resistance, fluid-temperature, fluid-flow, and acoustic-televiewer logs. Caliper and acoustic-televiewer logs were used to locate fractures, joints, and weathered zones. Inflections on fluid-temperature and single-point-resistance logs indicated possible water-bearing fractures, and flowmeter measurements verified these locations. Single-point-resistance, natural-gamma, and geologist logs provided information on stratigraphy. Flowmeter measurements were conducted while the site extraction well was pumping and when it was inactive to determine the hydraulic connections between the extraction well and the boreholes.Borehole geophysical logging and heatpulse flowmetering indicate active flow in the boreholes. Two of the boreholes are in ground-water discharge areas, two boreholes are in ground-water recharge areas, and one borehole is in an intermediate regime. Flow was not determined in one borehole. Heatpulse flowmetering, in conjunction with the geologist logs, indicates highly weathered zones in the granitic gneiss can be permeable and effective transmitters of water, confirming the presence of a two-tiered ground-water-flow system. The effort to determine a hydraulic connection between the site extraction well and six logged boreholes was not conclusive. Three boreholes showed decreases in depth to water after pumping of the site extraction well; in two boreholes, the depth to water increased. One borehole was cased its entire depth and was not revisited after it was logged by the caliper log. Substantial change in flow rates or direction of borehole flow was not observed in any of the three wells logged with the heatpulse flowmeter when the site extraction well was pumping and when it was inactive.

Short-term nitrogen losses by overland flow in a recently burnt forest area in north-central Portugal: A study at micro-plot scale.

PubMed

Ferreira, R V; Serpa, D; Machado, A I; Rodríguez-Blanco, M L; Santos, L F; Taboada-Castro, M T; Cerqueira, M A; Keizer, J J

2016-12-01

Over the past decades, wildfires have affected extensive areas of the Mediterranean region with negative impacts on the environment. Most of the studies on fire-affected areas have focused on sediment losses by overland flow, whereas few have addressed post-fire nutrient export. The present study aimed to address this research gap by assessing nitrogen (nitrate and total nitrogen) losses by overland flow in a recently burnt area in north-central Portugal. To this end, three burnt slopes were selected for their contrasting forest types (eucalypt vs. pine) and parent materials (granite vs. schist). The selected study sites were a eucalypt site on granite (BEG), a eucalypt site on schist (BES) and a maritime pine site on schist (BPS). Overland flow samples were collected during the first six months after the wildfire on a 1- to 2-weekly basis, after which this study had to be cancelled due to bench terracing of some of the sites. A peak in total nitrogen concentrations was observed in burnt areas immediately after the first post-fire rainfall event as a response to the erosion of the N-enriched ash layer. After this initial peak, smaller peaks were observed throughout the study period, mainly as a response to overland flow and/or erosion events. Nitrogen export differed strikingly between the two types of forests on schist, being higher at the eucalypt than at the pine site, due to the lack of a protective soil layer. Parent material did not play an important role on nitrogen export by overland flow since no significant differences were found between the eucalypt sites on granite and schist. The present study provides some insight into the differences in post-fire soil fertility losses between forest types and parent materials in the Mediterranean region, which is crucial information for defining post-fire land management measures to reduce soil degradation. Copyright © 2015 Elsevier B.V. All rights reserved.

Diagnostic Tools for Performance Evaluation of Innovative In-Situ Remediation Technologies at Chlorinated Solvent-Contaminated Sites

DTIC Science & Technology

2011-07-01

fluid resistivity , temperature logging, and flow metering at other sites that typically indicated only two or three active fractures in each hole...was consistent with results of conventional borehole fluid resistivity , temperature logging, and flow metering at other sites that typically indicated...following tests were performed in each boundary monitoring well: ■ Gamma Ray; ■ Spontaneous Potential (SP); ■ Single Point Resistance (SPR

Cryptosporidium source tracking in the Potomac River watershed.

PubMed

Yang, Wenli; Chen, Plato; Villegas, Eric N; Landy, Ronald B; Kanetsky, Charles; Cama, Vitaliano; Dearen, Theresa; Schultz, Cherie L; Orndorff, Kenneth G; Prelewicz, Gregory J; Brown, Miranda H; Young, Kim Roy; Xiao, Lihua

2008-11-01

To better characterize Cryptosporidium in the Potomac River watershed, a PCR-based genotyping tool was used to analyze 64 base flow and 28 storm flow samples from five sites in the watershed. These sites included two water treatment plant intakes, as well as three upstream sites, each associated with a different type of land use. The uses, including urban wastewater, agricultural (cattle) wastewater, and wildlife, posed different risks in terms of the potential contribution of Cryptosporidium oocysts to the source water. Cryptosporidium was detected in 27 base flow water samples and 23 storm flow water samples. The most frequently detected species was C. andersoni (detected in 41 samples), while 14 other species or genotypes, almost all wildlife associated, were occasionally detected. The two common human-pathogenic species, C. hominis and C. parvum, were not detected. Although C. andersoni was common at all four sites influenced by agriculture, it was largely absent at the urban wastewater site. There were very few positive samples as determined by Environmental Protection Agency method 1623 at any site; only 8 of 90 samples analyzed (9%) were positive for Cryptosporidium as determined by microscopy. The genotyping results suggest that many of the Cryptosporidium oocysts in the water treatment plant source waters were from old calves and adult cattle and might not pose a significant risk to human health.

Perceived Factors Associated with Sustained Improvement Following Participation in a Multicenter Quality Improvement Collaborative.

PubMed

Stone, Sohini; Lee, Henry C; Sharek, Paul J

2016-07-01

The California Perinatal Quality Care Collaborative led the Breastmilk Nutrition Quality Improvement Collaborative from October 2009 to September 2010 to increase the percentage of very low birth weight infants receiving breast milk at discharge in 11 collaborative neonatal ICUs (NICUs). Observed increases in breast milk feeding and decreases in necrotizing enterocolitis persisted for 6 months after the collaborative ended. Eighteen to 24 months after the end of the collaborative, some sites maintained or further increased their gains, while others trended back toward baseline. A study was conducted to assess the qualitative factors that affect sustained improvement following participation. Collaborative leaders at each of the 11 NICUs that participated in the Breastmilk Nutrition Quality Improvement Collaborative were invited to participate in a site-specific one-hour phone interview. Interviews were recorded and transcribed and then analyzed using qualitative research analysis software to identify themes associated with sustained improvement. Eight of 11 invited centers agreed to participate in the interviews. Thematic saturation was achieved by the sixth interview, so further interviews were not pursued. Factors contributing to sustainability included physician involvement within the multidisciplinary teams, continuous education, incorporation of interventions into the daily work flow, and integration of a data-driven feedback system. Early consideration by site leaders of how to integrate best-practice interventions into the daily work flow, and ensuring physician commitment and ongoing education based in continuous data review, should enhance the likelihood of sustaining improvements. To maximize sustained success, future collaborative design should consider proactively identifying and supporting these factors at participating sites.

Bathymetry (Part I), sedimentary regimes (Part II), and abyssal waste-disposal potential near the conterminous United States

NASA Astrophysics Data System (ADS)

Bowles, Frederick A.; Vogt, Peter R.; Jung, Woo-Yeol

1998-05-01

Placing waste on the seafloor, with the intention that it remain in place and isolated from mankind, requires a knowledge of the environmental factors that may be applicable to a specific seafloor area. DBDB5 (Digital Bathymetric Database gridded at 5' latitude by 5' longitude cell dimension) is used here for regional assessments of seafloor depth, slope, and relief at five surrogate abyssal waste sites; two each in the western Atlantic and eastern Pacific, and one in the Gulf of Mexico. Only Pacific-1 exhibits a `high' slope (2°) by DBDB5 standards, whereas the remaining sites are located on almost level seafloor. Detailed examination of the sites using multibeam-based contour sheets show the area around Atlantic-1 to be a featureless plain. Atlantic-2 and both Pacific sites are surrounded by abyssal hill topography, with local slopes ranging from greater than 6° at all sites to above 15° at Pacific-2. Neither Pacific site features a seafloor as `flat' as at Atlantic-1 or at the Gulf of Mexico site. Locating waste sites on sedimented slopes could have serious consequences due to catastrophic slope failure and downslope displacement of waste by mass sediment-transport processes. Neither slumping nor sliding are perceived as critical processes affecting the surrogate sites because of their locations on negligibly sloping seafloors. However, debris flows and turbidity currents are capable of transporting large volumes of sediment for long distances over low gradients and, in the case of turbidity currents, at great speed. Dispersal of loose waste material by these processes is virtually assured, but less likely if the waste is bagged. The turbidity current problem is alleviated (but not eliminated) by locating waste sites on distal portions of abyssal plains. Both Pacific sites are surrounded by abyssal hills and, in the case of Pacific-2, far beyond the reach of land-derived turbidity currents. Thin sediment cover and low rates of sedimentation have also resulted in highly stable slope (abyssal hill) deposits. Hence, the probability of locally derived, small-volume flows is low at these sites. Existing high sea levels have also resulted in a worldwide decrease in turbidity current activity relative to glacial times when sea levels were much lower.

A comparison of ruminal or reticular digesta sampling as an alternative to sampling from the omasum of lactating dairy cows.

PubMed

Fatehi, F; Krizsan, S J; Gidlund, H; Huhtanen, P

2015-05-01

The objective of this study was to develop and compare techniques for determining nutrient flow based on digesta samples collected from the reticulum or rumen of lactating dairy cows with estimates generated by the omasal sampling technique. Pre-experimental method development suggested, after comparing with the particle size distribution of feces, application of primary sieving of ruminal and reticular digesta from lactating cows through an 11.6-mm sieve, implying that digesta particles smaller than this were eligible to flow out of the rumen. For flow measurements at the different sampling sites 4 multiparous, lactating Nordic Red cows fitted with ruminal cannulas were used in a Latin square design with 4 dietary treatments, in which crimped barley was replaced with 3 incremental levels of protein supplementation of canola meal. Digesta was collected from the rumen, reticulum, and omasum to represent a 24-h feeding cycle. Nutrient flow was calculated using the reconstitution system based on Cr, Yb, and indigestible neutral detergent fiber and using (15)N as microbial marker. Large and small particles and the fluid phase were recovered from digesta collected at all sampling sites. Bacterial samples were isolated from the digesta collected from the omasum. Several differences existed for digesta composition, nutrient flows, and estimates of ruminal digestibility among the 3 different sampling sites. Sampling site × diet interactions were not significant. The estimated flows of DM, potentially digestible neutral detergent fiber, nonammonia N, and microbial N were significantly different between all sampling sites. However, the difference between DM flow based on sampling from the reticulum and the omasum was small (0.13kg/d greater in the omasum). The equality between the reticulum and the omasum as sampling sites was supported by the following regression: omasal DM flow=0.37 (±0.649) + 0.94 (±0.054) reticular DM flow (R(2)=0.96 and root mean square error=0.438kg/d). More deviating nutrient-flow estimates when sampling digesta from the rumen than the reticulum compared with the omasum suggested that sampling from the reticulum is the most promising alternative to the omasal sampling technique. To definitively promote sampling from the reticulum as an alternative to the omasal sampling technique, more research is needed to determine selection criteria of reticular digesta for accurate and precise flow estimates across a range of diets. Copyright © 2015 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Quantification of fish habitat in selected reaches of the Marmaton and Marais des Cygnes Rivers, Missouri

USGS Publications Warehouse

Heimann, David C.; Richards, Joseph M.; Brewer, Shannon K.; Norman, Richard D.

2005-01-01

The U.S. Geological Survey, in cooperation with the Missouri Department of Conservation, undertook a study to quantify fish habitat by using relations between streamflow and the spatial and temporal distributions of fish habitat at five sites in the Marmaton and Marais des Cygnes Rivers in western Missouri. Twenty-six fish habitat categories were selected for nine species under varying seasonal (spring, summer, and fall), diel (summer day and night), and life-stage (spawning, juvenile, and adult) conditions. Physical habitat characteristics were determined for each category using depth, velocity, and channel substrate criteria. Continuous streamflow data were then combined with the habitat-streamflow relations to compile a habitat time series for each habitat category at each site. Fish habitat categories were assessed as to their vulnerability to habitat alteration based on critical life stages (spawning and juvenile rearing periods) and susceptibility to habitat limitations from dewatering or high flows. Species categories representing critical life stages with physical habitat limitations represent likely bottlenecks in fish populations. Categories with potential bottlenecks can serve as indicator categories and aid managers when determining the flows necessary for maintaining these habitats under altered flow regimes. The relation between the area of each habitat category and streamflow differed greatly between category, season, and stream reach. No single flow maximized selected habitat area for all categories or even for all species/category within a particular season at a site. However, some similarities were noted among habitat characteristics, including the streamflow range for which habitat availability is maximized and the range of streamflows for which a habitat category area is available at the Marmaton River sites. A monthly habitat time series was created for all 26 habitat categories at two Marmaton River sites. A daily habitat time series was created at three Marais des Cygnes River sites for two periods: 1941 through 1963 (pre-regulation) and 1982 through 2003 (post-regulation). The habitat category with the highest median area in spring was paddlefish (Polyodon spathula) with normalized areas of up to 2,000 square meters per 100 meters of stream channel. Flathead catfish (Pylodictis olivaris) habitat area generally was the category area most available in summer and fall. Differences in daily selected habitat area time series between pre- and post-regulation time periods varied by species/category and by site. For instance, whereas there was a decline in the distribution of spring spawning habitat for suckermouth minnow (Phenacobius mirabilis) and slenderhead darter (Percina phoxocephala) from pre- to post-regulation periods at all three sites, the 25 to 75 percentile habitat area substantially increased for paddlefish under post-regulation conditions. Potential habitat area for most species was maximized at the Marmaton River sites at flows of about 1 to 10 cubic meters per second, whereas median monthly streamflows ranged from less than 1 to 20 cubic meters per second depending on site and season. Paddlefish habitat was available beginning at higher flows than other categories (4 to 7 cubic meters per second) and also maximized at higher flows (greater than 50 to 100 cubic meters per second). Selected potential habitat area was maximized for most species at the Marais des Cygnes River sites at flows of about 1 to 50 cubic meters per second, whereas median monthly streamflows ranged from 4 to 55 cubic meters per second depending on site and season. The range of streamflows for which selected habitat area was available in summer and fall was substantially less at the channelized Marais des Cygnes River site when compared to the non-channelized sites, and, therefore, the susceptibility of categories to high-flow habitat limitations was greater at this site. The channelized reach was more unifor

KENNEDY SPACE CENTER, FLA. - Louis MacDowell (right), Testbed manager, explains to Center Director Jim Kennedy the use of astmospheric calibration specimens. Placed at various locations, they can rank the corrosivity of the given environment. The KSC Beach Corrosion Test Site was established in the 1960s and has provided more than 30 years of historical information on the long-term performance of many materials in use at KSC and other locations around the world. Located 100 feet from the Atlantic Ocean approximately 1 mile south of the Space Shuttle launch sites, the test facility includes an atmospheric exposure site, a flowing seawater exposure site, and an on-site electrochemistry laboratory and monitoring station. The beach laboratory is used to conduct real-time corrosion experiments and provides for the remote monitoring of surrounding weather conditions. The newly added flowing seawater immersion facility provides for the immersion testing of materials and devices under controlled conditions.

NASA Image and Video Library

2003-08-21

KENNEDY SPACE CENTER, FLA. - Louis MacDowell (right), Testbed manager, explains to Center Director Jim Kennedy the use of astmospheric calibration specimens. Placed at various locations, they can rank the corrosivity of the given environment. The KSC Beach Corrosion Test Site was established in the 1960s and has provided more than 30 years of historical information on the long-term performance of many materials in use at KSC and other locations around the world. Located 100 feet from the Atlantic Ocean approximately 1 mile south of the Space Shuttle launch sites, the test facility includes an atmospheric exposure site, a flowing seawater exposure site, and an on-site electrochemistry laboratory and monitoring station. The beach laboratory is used to conduct real-time corrosion experiments and provides for the remote monitoring of surrounding weather conditions. The newly added flowing seawater immersion facility provides for the immersion testing of materials and devices under controlled conditions.

Cryptosporidium Source Tracking in the Potomac River Watershed

EPA Science Inventory

To better characterize the presence of Cryptosporidium in the Potomac River watershed, a PCR-based genotyping tool was used to analyze 64 base-flow and 28 storm-flow samples from five sites within the watershed. These sites included two water treatment plant intakes as well as t...

Cryptosporidium source tracking in the Potomac River watershed - MCEARD

EPA Science Inventory

To better characterize Cryptosporidium in the Potomac River watershed, a PCR-based genotyping tool was used to analyze 64 base-flow and 28 storm-flow samples from five sites within the watershed. These sites included two water treatment plant intakes as well as three upstream si...

Pahoehoe toe dimensions, morphology, and branching relationships at Mauna Ulu, Kilauea Volcano, Hawai'i

NASA Astrophysics Data System (ADS)

Crown, David A.; Baloga, Stephen M.

Pahoehoe toe dimensions, morphology, and branching relationships were analyzed in flows emplaced during 1972 at Mauna Ulu, a satellitic shield on the east rift zone of Kilauea Volcano, Hawai'i. In order to characterize regions within flow fields dominated by networks of pahoehoe toes, measurements of toe length, width, thickness, and orientation were completed for 445 toes at 13 sites. Variations in site characteristics, including slope, substrate, and position in the flow field allow an evaluation of the effects of such parameters on toe dimensions. Toe surface morphology (ropy or smooth), local flow lobe position (interior or margin), and connective relationships between toes were documented in the form of detailed toe maps. These maps show the number of branches connecting a given toe to other toes in its local pahoehoe network and illustrate branching patterns. Statistical analyses of toe dimensions and comparisons of pahoehoe toe study sites and sub-populations combined with field observations, evaluation of toe maps, and qualitative examination of toe dimension size distributions show the following: (a) Although there are significant variations at a given site, toes typically have mean lengths (101cm) greater than mean widths (74cm) and mean widths greater than mean thicknesses (19cm) sites that have mean widths greater than mean lengths are those with lower slopes. (b) Where significant site-to-site variations in mean values of a given toe dimension were apparent, these differences could not be directly related to site characteristics. (c) Ropy toes have significantly larger mean values of length, width, and number of branches than smooth toes, and toes with three or more branches have greater lengths, widths, and thicknesses than toes with two or fewer branches, suggesting concentration of flow in these toe types. (d) The skewness of all size distributions of toe length and width to larger values suggests that toes are transitional to larger sheets and channels, consistent with field observations; and (e) Two distinct types of branching patterns (called monolayer and centrally ridged) were observed in preserved pahoehoe flow lobes. The significant variability in measured toe dimensions at Mauna Ulu suggests that toe dimensions are influenced by numerous locally defined, random factors, and that an approach based on stochastic methods can be used to model pahoehoe flow emplacement.

The Characteristics of Turbulent Flows on Forested Floodplains

NASA Astrophysics Data System (ADS)

Darby, S. E.; Richardson, K.; Sear, D. A.

2008-12-01

Forested floodplain environments represent the undisturbed land cover of most river systems, but they are under threat from human activities. An understanding of forest floodplain processes therefore has relevance to ecosystem conservation and restoration, and the interpretation of pre-historic river and floodplain evolution. However, relatively little research has been undertaken within forested floodplain environments, a particular limitation being an absence of empirical data regarding the hydraulic characteristics of over bank flows, which inhibits the development of flow, sediment and solute transport models. Forest floodplain flows are strongly modified by floodplain topography and the presence of vegetation and organic debris on the woodland floor. In such instances flow blockage and diversions are common, and there is the possibility of intense turbulence generation, both by wakes and by shear. To address this gap we have undertaken a study based on a floodplain reach located in the Highland Water Research Catchment (southern England), a UK national reference site for lowland floodplain forest streams. Given the difficulties of acquiring spatially-distributed hydraulic data sets during floods, our methodological approach has been to attempt to replicate over bank flow observed at the study site within a laboratory flume. This is necessary to acquire flow velocity data at sufficiently high spatial resolution to evaluate the underlying flow mechanics and has been achieved using (i) a large (21m) flume to achieve 1:1 hydraulic scaling and (ii) a novel method of precisely replicating the floodplain topography within the flume. Specifically, accurate replication of a representative floodplain patch was achieved by creating a 1:1 scale Physical Terrain Model (PTM) from high-density polyurethane using a computer-controlled milling process based on Digital Terrain Model (DTM) data, the latter acquired via terrestrial laser scanning (TLS) survey. The PTM was deployed within the flume immediately downstream of a 8m long hydraulically smooth 'run-in' section with a steady discharge replicating an over bank flow observed in the field, thus achieving 1:1 hydraulic scaling. Above the PTM 3D flow velocity time-series were acquired at each node on a dense (5-10cm horizontal spatial resolution) sampling grid using Acoustic Doppler Velocimeters (ADVs). The data were analysed by visualising the 3D structure of flow velocity and derivative statistics (turbulent intensity, turbulent kinetic energy, Reynolds stresses, etc), combined with quadrant analysis to identify the spatial variation of each quadrant's contribution to the turbulence intensity. These analyses have been used to delineate flow regions dominated by different structures, and construct an empirical model that will be helpful in defining relevant modelling strategies in future research.

Use of a digital model to evaluate hydrogeologic controls on groundwater flow in a fractured rock aquifer at Niagara Falls, New York, U.S.A.

USGS Publications Warehouse

Maslia, M.L.; Johnston, R.H.

1984-01-01

The Hyde Park landfill is a 15-acre (6.1 ha) chemical waste disposal site located north of Niagara Falls, New York. Underlying the site in descending order are: (1) low-permeability glacial till and lacustrine deposits; (2) a moderately permeable fractured rock aquifer - the Lockport Dolomite; and (3) a low-permeability unit - the Rochester Shale. The site is bounded on three sides by groundwater drains; the Niagara River gorge, the Niagara Power Project canal, and the Niagara Power Project buried conduits. The mechanism by which groundwater moves through fractured rocks underlying a hazardous waste site was investigated using a digital simulation approach. Three hypotheses were tested related to flow in the fractured rocks underlying Hyde Park landfill. For this purpose we used a Galerkin finite-element approximation to solve a saturated-unsaturated flow equation. A primary focus was to investigate anisotropy in the Lockport Dolomite, that is the effectiveness of horizontal (bedding) joints vs. vertical joints as water-transmitting openings. Three hydrogeologic scenarios were set up - each with prescribed limits on the hydrologic parameters. Scenario 1 specified strongly anisotropic conditions in the Lockport Dolomite (horizontal hydraulic conductivity along bedding joints exceeds vertical conductivity by 2-3 orders of magnitude), uniform areal recharge (5 in. yr.-1 or 12.7 cm yr.-1) except at the landfill where there is no recharge, and no flow through the base of the Rochester Shale. Scenario 2 also specified strongly anisotropic conditions in the Lockport; however, areal recharge was 6 in. yr.-1 (15.2 cm yr.-1) except at the landfill where the recharge was 2 in. yr.-1 (5.1 cm yr.-1), and outflow from the Rochester occurred. Scenario 3 specified isotropic conditions (that is, permeability along horizontal and vertical joints is the same in the Lockport Dolomite), recharge rates were the same as in scenario 2 and outflow through Rochester occurred. Scenario 2 provided the closest agreement between the simulated and measured heads while scenario 3 provided the poorest agreement. Among the three scenarios tested, scenario 2 (with strongly anisotropic conditions in the Lockport Dolomite with added recharge through the landfill cap and limited flow through the Rocherster Shale) is considered the most realistic hydrogeologic model. Based on simulation with the hydrogeologic parameters of scenario 2, groundwater flow near the Hyde Park site can be summarized as follows: 1. (1) Specific discharge (Darcy velocity) ranges from ???0.01 to 0.1 ft. day-1 (0.003 to 0.03 m day-1) in the upper unit of the Lockport Dolomite to slightly more than 0.0001 ft. day-1 (0.00003 m day-1) in the Rochester Shale. Real velocities are highest in the upper unit of the Lockport, ranging from ???1 to 5 ft. day-1 (0.3 to 1.5 m day-1) if the average effective porosity is assumed to be 0.02. 2. (2) A groundwater divide exists east of the landfill, indicating that all groundwater originating near or flowing beneath the landfill will flow toward and discharge in the gorge. 3. (3) Highest flow velocities (and presumably greatest potential for transporting chemical contaminants) occur in the upper unit of the Lockport and part of the lower unit of the Lockport Dolomite between the landfill and the gorge. The average time required for groundwater to move from the landfill to the discharge points at the gorge along selected flow paths in the Lockport Dolomite is estimated to be 5-6 yr. ?? 1984.

Electrocatalytic Synthesis of Ammonia at Room Temperature and Atmospheric Pressure from Water and Nitrogen on a Carbon-Nanotube-Based Electrocatalyst.

PubMed

Chen, Shiming; Perathoner, Siglinda; Ampelli, Claudio; Mebrahtu, Chalachew; Su, Dangsheng; Centi, Gabriele

2017-03-01

Ammonia is synthesized directly from water and N 2 at room temperature and atmospheric pressure in a flow electrochemical cell operating in gas phase (half-cell for the NH 3 synthesis). Iron supported on carbon nanotubes (CNTs) was used as the electrocatalyst in this half-cell. A rate of ammonia formation of 2.2×10 -3  gNH3  m -2  h -1 was obtained at room temperature and atmospheric pressure in a flow of N 2 , with stable behavior for at least 60 h of reaction, under an applied potential of -2.0 V. This value is higher than the rate of ammonia formation obtained using noble metals (Ru/C) under comparable reaction conditions. Furthermore, hydrogen gas with a total Faraday efficiency as high as 95.1 % was obtained. Data also indicate that the active sites in NH 3 electrocatalytic synthesis may be associated to specific carbon sites formed at the interface between iron particles and CNT and able to activate N 2 , making it more reactive towards hydrogenation. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Hydrologic reconnaissance of western Arctic Alaska, 1976 and 1977

USGS Publications Warehouse

Childers, Joseph M.; Kernodle, Donald R.; Loeffler, Robert M.

1979-01-01

Reconnaissance water-resource investigations were conducted on the western Alaskan Arctic Slope during April 1976 and August 1977; these months are times of winter and summer low flow. The information gathered is important for coordinated development in the area. Such development has been spurred by oil and gas discoveries on the North Slope, most notably at Prudhoe Bay. Little water resources information is currently available. The study area extended from the Colville River to the vicinity of Kotzebue. It included the western Arctic Slope and the western foothills of the Brooks Range. Nine springs, nine lakes and eleven rivers were sampled during the April 1976 reconnaissance trip. Its purpose was to locate winter flow and describe its quantity and quality. Field water-quality measurements made at these sites were: ice thickness, water depth, discharge (spring and streams), specific conductance, water temperature, dissolved oxygen, alkalinity (bicarbonate, HOC3), and pH. A followup summer trip was made in August 1977 to determine flood characteristics of twenty selected streams. Bankfull and maximum evident flood-peak discharges were determined by measuring channel geometry and estimating channel roughness. Aquatic invertebrate samples were collected at springs and flood survey sites visited during both reconnaissance trips. (Woodard-USGS)

Pesticide concentrations in water and in suspended and bottom sediments in the New and Alamo rivers, Salton Sea Watershed, California, April 2003

USGS Publications Warehouse

LeBlanc, Lawrence A.; Orlando, James L.; Kuivila, Kathryn

2004-01-01

This report contains pesticide concentration data for water, and suspended and bed sediment samples collected in April 2003 from twelve sites along the New and Alamo Rivers in the Salton Sea watershed, in southeastern California. The study was done in collaboration with the California State Regional Water Quality Control Board, Colorado River Region, to assess inputs of current-use pesticides associated with water and sediment into the New and Alamo Rivers. Five sites along the New River and seven sites along the Alamo River, downstream of major agricultural drains, were selected and covered the lengths of the rivers from the international boundary to approximately 1.5 km from the river mouths. Sampling from bridges occurred at seven of the twelve sites. At these sites, streamflow measurements were taken. These same sites were also characterized for cross-stream homogeneity by measuring dissolved oxygen, pH, specific conductance, temperature, and suspended solids concentration at several vertical (depths) and horizontal (cross-stream) points across the river. Large volume water samples (200?300 L) were collected for isolation of suspended sediments by flow-through centrifugation. Water from the outflow of the flow-through centrifuge was sampled for the determination of aqueous pesticide concentrations. In addition, bottom sediments were sampled at each site. Current-use pesticides and legacy organochlorine compounds (p,p'-DDT, p,p'-DDE and p,p'-DDD) were extracted from sediments and measured via gas chromatography/mass spectrometry (GC/MS). Organic carbon and percentage of fines were also determined for suspended and bottom sediments. Cross-stream transects of dissolved constituents and suspended sediments showed that the rivers were fairly homogeneous at the sites sampled. Streamflow was higher at the outlet sites, with the Alamo River having higher flow (1,240 cfs) than the New River (798 cfs). Twelve current-use pesticides, one legacy organochlorine compound (p,p'-DDE), and the additive piperonyl butoxide were detected in water samples. Trifluralin was found in the highest concentration of all detected compounds (68.5?599 ng/L) at all sites in both rivers, except for the international boundary sites. Atrazine was also detected in high concentration (51.0?285 ng/L) at several sites. The outlet sites had among the highest numbers of pesticides detected and the international boundary sites had the lowest numbers of pesticides detected for both rivers. The numbers of pesticides detected were greater for the Alamo River than for the New River. Six current-use pesticides and two legacy organochlorines (p,p'-DDE and p,p'-DDD) were found associated with suspended and bed sediments. The DDT metabolite p,p'-DDE was detected in all suspended and bed sediments from the Alamo River, but only at two sites in the New River. Dacthal, chlorpyrifos, pendimethalin, and trifluralin were the most commonly detected current-use pesticides. Trifluralin was the compound found in the highest concentrations in suspended (14.5?120 ng/g) and bed (1.9?9.0 ng/g) sediments. The sites along the Alamo River had more frequent detections of pesticides in suspended and bed sediments when compared with the New River sites. The greatest number of pesticides that were detected in suspended sediments (seven) were in the samples from the Sinclair Road and Harris Road sites. For bottom sediments, the Alamo River outlet site had the greatest number of pesticide detections (eight).

Projected effects of Climate-change-induced flow alterations on stream macroinvertebrate abundances.

PubMed

Kakouei, Karan; Kiesel, Jens; Domisch, Sami; Irving, Katie S; Jähnig, Sonja C; Kail, Jochem

2018-03-01

Global change has the potential to affect river flow conditions which are fundamental determinants of physical habitats. Predictions of the effects of flow alterations on aquatic biota have mostly been assessed based on species ecological traits (e.g., current preferences), which are difficult to link to quantitative discharge data. Alternatively, we used empirically derived predictive relationships for species' response to flow to assess the effect of flow alterations due to climate change in two contrasting central European river catchments. Predictive relationships were set up for 294 individual species based on (1) abundance data from 223 sampling sites in the Kinzig lower-mountainous catchment and 67 sites in the Treene lowland catchment, and (2) flow conditions at these sites described by five flow metrics quantifying the duration, frequency, magnitude, timing and rate of flow events using present-day gauging data. Species' abundances were predicted for three periods: (1) baseline (1998-2017), (2) horizon 2050 (2046-2065) and (3) horizon 2090 (2080-2099) based on these empirical relationships and using high-resolution modeled discharge data for the present and future climate conditions. We compared the differences in predicted abundances among periods for individual species at each site, where the percent change served as a proxy to assess the potential species responses to flow alterations. Climate change was predicted to most strongly affect the low-flow conditions, leading to decreased abundances of species up to -42%. Finally combining the response of all species over all metrics indicated increasing overall species assemblage responses in 98% of the studied river reaches in both projected horizons and were significantly larger in the lower-mountainous Kinzig compared to the lowland Treene catchment. Such quantitative analyses of freshwater taxa responses to flow alterations provide valuable tools for predicting potential climate-change impacts on species abundances and can be applied to any stressor, species, or region.

Launch Vehicle Control Center Architectures

NASA Technical Reports Server (NTRS)

Watson, Michael D.; Epps, Amy; Woodruff, Van; Vachon, Michael Jacob; Monreal, Julio; Levesque, Marl; Williams, Randall; Mclaughlin, Tom

2014-01-01

Launch vehicles within the international community vary greatly in their configuration and processing. Each launch site has a unique processing flow based on the specific launch vehicle configuration. Launch and flight operations are managed through a set of control centers associated with each launch site. Each launch site has a control center for launch operations; however flight operations support varies from being co-located with the launch site to being shared with the space vehicle control center. There is also a nuance of some having an engineering support center which may be co-located with either the launch or flight control center, or in a separate geographical location altogether. A survey of control center architectures is presented for various launch vehicles including the NASA Space Launch System (SLS), United Launch Alliance (ULA) Atlas V and Delta IV, and the European Space Agency (ESA) Ariane 5. Each of these control center architectures shares some similarities in basic structure while differences in functional distribution also exist. The driving functions which lead to these factors are considered and a model of control center architectures is proposed which supports these commonalities and variations.

Hydrogeology of a low-level radioactive-waste disposal site near Sheffield, Illinois

USGS Publications Warehouse

Foster, J.B.; Erickson, J.R.; Healy, R.W.

1984-01-01

The Sheffield low-level radioactive-waste facility is located on 20 acres of rolling terrain 3 miles southwest of Sheffield, Illinois. The shallow hydrogeologic system is composed of glacial sediments. Pennsylvania shale and mudstone bedrock isolate the regional aquifers below from the hydrogeologic system in the overlying glacial deposits. Pebbly sand underlies 67 percent of the site. Two ground-water flow paths were identified. The primary path conveys ground water from the site to the east through the pebbly-sand unit; a secondary path conveys ground water to the south and east through less permeable material. The pebbly-sand unit provides an underdrain that eliminates the risk of water rising into the trenches. Digital computer model results indicate that the pebbly-sand unit controls ground-water movement. Tritium found migrating in ground water in the southeast corner of the site travels approximately 25 feet per year. A group of water samples from wells which contained the highest tritium concentrations had specific conductivities, alkalinities, hardness, and chloride, sulfate, calcium, and magnesium contents higher than normal for local shallow ground water. (USGS)

[Clinical development of acute noise-induced acoustic trauma. An evaluation of a study of 250 cases].

PubMed

Suc, B; Poulet, M; Asperge, A; Vix, J; Barberot, J P; Doucet, F

1994-01-01

Traumatic damage on Cochlea (250 cases) induced by assault gun (F.A.M.A.S.) consists in tinitus and hearing impairement on 6000 Hz. Noise's effects are specific to one Cochlea. Dissociated developments of both tinitus and hearing loss show that their anatomical sites are different. Acoustic injury entails definitive haire cells lesions, cellular biochemical and vascular changes. The treatment that reestablishes or raises cochlear blood flow entails recovery in 80% of cases provided that it is given within 48 hours after the trauma.

Water-resources investigations in Wisconsin, 1993

USGS Publications Warehouse

Maertz, D.E.

1993-01-01

OBJECTIVE: The objectives of this study are to provide continuous discharge records for selected rivers at specific sites to supply the needs for: regulation, analytical studies, definition of statistical properties, trends analysis, determination of the occurrence, and distribution of water in streams for planning. The project is also designed to determine lake levels and to provide discharge for floods, low-flow conditions, and for water-quality investigations. Requests for streamflow data and information relating to streamflow in Wisconsin are answered. Basic data are published annually in "Water Resources Data Wisconsin."

Geological effects and implications of the 2010 tsunami along the central coast of Chile

NASA Astrophysics Data System (ADS)

Morton, Robert A.; Gelfenbaum, Guy; Buckley, Mark L.; Richmond, Bruce M.

2011-12-01

Geological effects of the 2010 Chilean tsunami were quantified at five near-field sites along a 200 km segment of coast located between the two zones of predominant fault slip. Field measurements, including topography, flow depths, flow directions, scour depths, and deposit thicknesses, provide insights into the processes and morphological changes associated with tsunami inundation and return flow. The superposition of downed trees recorded multiple strong onshore and alongshore flows that arrived at different times and from different directions. The most likely explanation for the diverse directions and timing of coastal inundation combines (1) variable fault rupture and asymmetrical slip displacement of the seafloor away from the epicenter with (2) resonant amplification of coastal edge waves. Other possible contributing factors include local interaction of incoming flow and return flow and delayed wave reflection by the southern coast of Peru. Coastal embayments amplified the maximum inundation distances at two sites (2.4 and 2.6 km, respectively). Tsunami vertical erosion included scour and planation of the land surface, inundation scour around the bases of trees, and channel incision from return flow. Sheets and wedges of sand and gravel were deposited at all of the sites. Locally derived boulders up to 1 m in diameter were transported as much as 400 m inland and deposited as fields of dispersed clasts. The presence of lobate bedforms at one site indicates that at least some of the late-stage sediment transport was as bed load and not as suspended load. Most of the tsunami deposits were less than 25 cm thick. Exceptions were thick deposits near open-ocean river mouths where sediment supply was abundant. Human alterations of the land surface at most of the sites provided opportunities to examine some tsunami effects that otherwise would not have been possible, including flow histories, boulder dispersion, and vegetation controls on deposit thickness.

Geological effects and implications of the 2010 tsunami along the central coast of Chile

USGS Publications Warehouse

Morton, R.A.; Gelfenbaum, G.; Buckley, M.L.; Richmond, B.M.

2011-01-01

Geological effects of the 2010 Chilean tsunami were quantified at five near-field sites along a 200. km segment of coast located between the two zones of predominant fault slip. Field measurements, including topography, flow depths, flow directions, scour depths, and deposit thicknesses, provide insights into the processes and morphological changes associated with tsunami inundation and return flow. The superposition of downed trees recorded multiple strong onshore and alongshore flows that arrived at different times and from different directions. The most likely explanation for the diverse directions and timing of coastal inundation combines (1) variable fault rupture and asymmetrical slip displacement of the seafloor away from the epicenter with (2) resonant amplification of coastal edge waves. Other possible contributing factors include local interaction of incoming flow and return flow and delayed wave reflection by the southern coast of Peru. Coastal embayments amplified the maximum inundation distances at two sites (2.4 and 2.6. km, respectively). Tsunami vertical erosion included scour and planation of the land surface, inundation scour around the bases of trees, and channel incision from return flow. Sheets and wedges of sand and gravel were deposited at all of the sites. Locally derived boulders up to 1. m in diameter were transported as much as 400. m inland and deposited as fields of dispersed clasts. The presence of lobate bedforms at one site indicates that at least some of the late-stage sediment transport was as bed load and not as suspended load. Most of the tsunami deposits were less than 25. cm thick. Exceptions were thick deposits near open-ocean river mouths where sediment supply was abundant. Human alterations of the land surface at most of the sites provided opportunities to examine some tsunami effects that otherwise would not have been possible, including flow histories, boulder dispersion, and vegetation controls on deposit thickness. ?? 2011.

Geological impacts and implications of the 2010 tsunami along the central coast of Chile

USGS Publications Warehouse

Morton, Robert A.; Gelfenbaum, Guy; Buckley, Mark L.; Richmond, Bruce M.

2011-01-01

Geological effects of the 2010 Chilean tsunami were quantified at five near-field sites along a 200 km segment of coast located between the two zones of predominant fault slip. Field measurements, including topography, flow depths, flow directions, scour depths, and deposit thicknesses, provide insights into the processes and morphological changes associated with tsunami inundation and return flow. The superposition of downed trees recorded multiple strong onshore and alongshore flows that arrived at different times and from different directions. The most likely explanation for the diverse directions and timing of coastal inundation combines (1) variable fault rupture and asymmetrical slip displacement of the seafloor away from the epicenter with (2) resonant amplification of coastal edge waves. Other possible contributing factors include local interaction of incoming flow and return flow and delayed wave reflection by the southern coast of Peru. Coastal embayments amplified the maximum inundation distances at two sites (2.4 and 2.6 km, respectively). Tsunami vertical erosion included scour and planation of the land surface, inundation scour around the bases of trees, and channel incision from return flow. Sheets and wedges of sand and gravel were deposited at all of the sites. Locally derived boulders up to 1 m in diameter were transported as much as 400 m inland and deposited as fields of dispersed clasts. The presence of lobate bedforms at one site indicates that at least some of the late-stage sediment transport was as bed load and not as suspended load. Most of the tsunami deposits were less than 25 cm thick. Exceptions were thick deposits near open-ocean river mouths where sediment supply was abundant. Human alterations of the land surface at most of the sites provided opportunities to examine some tsunami effects that otherwise would not have been possible, including flow histories, boulder dispersion, and vegetation controls on deposit thickness.

Platelet-free shear flow assay facilitates analysis of shear-dependent functions of VWF and ADAMTS13.

PubMed

Kraus, Emma; Kraus, Kristina; Obser, Tobias; Oyen, Florian; Klemm, Ulrike; Schneppenheim, Reinhard; Brehm, Maria A

2014-12-01

The multimeric form of von Willebrand factor (VWF), is the largest soluble protein in mammals and exhibits a multidomain structure resulting in multiple functions. Upon agonist stimulation endothelial cells secrete VWF multimers from Weibel-Palade bodies into the blood stream where VWF plays an essential role in platelet-dependent primary hemostasis. Elongation of VWF strings on the cells' surface leads to accessibility of VWF binding sites for proteins, such as platelet membrane glycoprotein Ib. The prothrombotic strings are size-regulated by the metalloprotease ADAMTS13 by shear force-activated proteolytic cleavage. VWF string formation was induced by histamine stimulation of HUVEC cells under unidirectional shear flow and VWF strings were detected employing the VWF binding peptide of platelet glycoprotein Ib coupled to latex beads. VWF strings were then used as substrate for kinetic studies of recombinant and plasma ADAMTS13. To investigate specific aspects of the shear-dependent functions of VWF and ADAMTS13, we developed a shear flow assay that allows observation of VWF string formation and their degradation by ADAMTS13 without the need for isolated platelets. Our assay specifically detects VWF strings, can be coupled with fluorescent applications and allows semi-automated, quantitative assessment of recombinant and plasma ADAMTS13 activity. Our assay may serve as a valuable research tool to investigate the biochemical characteristics of VWF and ADAMTS13 under shear flow and could complement diagnostics of von Willebrand Disease and Thrombotic Thrombocytopenic Purpura as it allows detection of shear flow-dependent dysfunction of VWD-associated VWF mutants as well as TTP-associated ADAMTS13 mutants. Copyright © 2014 Elsevier Ltd. All rights reserved.

Assessment of site conditions for disposal of low- and intermediate-level radioactive wastes: a case study in southern China.

PubMed

Yi, Shuping; Ma, Haiyi; Zheng, Chunmiao; Zhu, Xiaobin; Wang, Hua'an; Li, Xueshan; Hu, Xueling; Qin, Jianbo

2012-01-01

Near surface disposal of low- and intermediate-level radioactive wastes (LILW) requires evaluating the field conditions of the candidate site. However, assessment of the site conditions may be challenging due to the limited prior knowledge of some remote sites, and various multi-disciplinary data requirements at any given site. These situations arise in China as in the rest of the industrialized world, particularly since a regional strategy for LILW disposal has been implemented to protect humans and the environment. This paper presents a demonstration of the site assessment process through a case study focusing mainly on the geologic, hydrogeologic and geochemical characteristics of the candidate site. A joint on-site and laboratory investigation, supplemented by numerical modeling, was implemented in this assessment. Results indicate that no fault is present in the site area, although there are some minor joints and fractures, primarily showing a north-south trend. Most of the joints are filled with quartz deposits and would thus function hydraulically as impervious barriers. Investigation of local hydrologic boundaries has shown that the candidate site represents an essentially isolated hydrogeologic unit, and that little or no groundwater flow occurs across its boundaries on the north or east, or across the hilly areas to the south. Groundwater in the site area is recharged by precipitation and discharges primarily by evapo-transpiration and surface flow through a narrow outlet to the west. Groundwater flows slowly from the hilly area to the foot of the hills and discharges mainly into the inner brooks and marshes. Some groundwater circulates in deeper granite in a slower manner. The vadose zone in the site was investigated specially for their significant capability for restraining the transport of radionuclides. Results indicate that the vadose zone is up to 38m in thickness and is made up of alluvial clay soils and very highly weathered granite. The vadose zone has low saturated hydraulic conductivities on the order of 10(-5)cm/s and in this respect is well-suited for the disposal of LILW. The saturated formations are primarily made up of silt and moderately-to-slightly weathered granite, which exhibit even lower hydraulic conductivities, on the order of 10(-6)cm/s, also favorable for restraining the transport of radionuclides. Chemical analyses indicate that the groundwaters at the site are of the HCO(3)-Na · Ca and HCO(3) · SO(4)-Na · Ca types and are weakly corrosive to concrete and steel. Geochemical analyses indicate that the rock and soil materials (particularly weathered granite) at the site contain very small fractions of colloidal particles and exhibit low Cation Exchange Capacities (CEC), and would therefore have limited capacity for sorption of radionuclides. Groundwater flow and solute transport models of the candidate site have been developed using MODFLOW and MT3DMS, incorporating the data obtained during the assessment program. Calibration was based on the available measured groundwater level fluctuations and tracer concentrations from in situ dispersion tests. The longitudinal dispersion coefficient as determined in calibration is equal to 5.0 × 10(-3) m(2)/d. Numerical sensitivity analyses indicate that the hydraulic conductivity and the longitudinal dispersion coefficient are the key parameters controlling the transport of radionuclides, while the numerical model is not sensitive to changes in the effective porosity and the specific yield. Preliminary predictions have been performed with the calibrated model both for the natural setting of the site and the graded site in which the valleys of the site are backfilled with low permeable materials. Results indicate that the proposed site grading increases the safety of the site for disposal of LILW by reducing both the groundwater level and the hydraulic gradient and that radionuclide transport would not likely be a problem or cause groundwater contamination. Although there are some problems remaining to be addressed in future work, the conclusion of the assessment is that the conditions at this site are appropriate for LILW disposal. This study provides an example of the procedures necessary in an assessment of site conditions relevant to the safe disposal of LILW. Such an assessment is crucial to the site selection process and to subsequent environmental impact assessment. Copyright © 2011 Elsevier B.V. All rights reserved.

Regional stochastic generation of streamflows using an ARIMA (1,0,1) process and disaggregation

USGS Publications Warehouse

Armbruster, Jeffrey T.

1979-01-01

An ARIMA (1,0,1) model was calibrated and used to generate long annual flow sequences at three sites in the Juniata River basin, Pennsylvania. The model preserves the mean, variance, and cross correlations of the observed station data. In addition, it has a desirable blend of both high and low frequency characteristics and therefore is capable of preserving the Hurst coefficient, h. The generated annual flows are disaggregated into monthly sequences using a modification of the Valencia-Schaake model. The low-flow frequency and flow duration characteristics of the generated monthly flows, with length equal to the historical data, compare favorably with the historical data. Once the models were verified, 100-year sequences were generated and analyzed for their low flow characteristics. One-, three- and six- month low-flow frequencies at recurrence intervals greater than 10 years are generally found to be lower than flow computed from the historical flows. A method is proposed for synthesizing flows at ungaged sites. (Kosco-USGS)

MODELING TO EVOLVE UNDERSTANDING OF THE SHALLOW GROUND WATER FLOW SYSTEM BENEATH THE LIZZIE RESEARCH SITE, NC

EPA Science Inventory

The purpose of the modeling effort presented here is to evolve a conceptual model of ground-water flow at the Lizzie, NC research site using analytic solutions and field observations. The resulting analytic element parameterization of boundary conditions, aquifer transmissivitie...

40 CFR 721.91 - Computation of estimated surface water concentrations: Instructions.

Code of Federal Regulations, 2010 CFR

2010-07-01

... shall be computed for each site using the stream flow rate appropriate for the site according to... computing the equation, the number of kilograms released, and receiving stream flow. (a) Number of kilograms... chemical changes and/or changes in location, temperature, pressure, physical state, or similar...

40 CFR 721.91 - Computation of estimated surface water concentrations: Instructions.

Code of Federal Regulations, 2014 CFR

2014-07-01

... shall be computed for each site using the stream flow rate appropriate for the site according to... computing the equation, the number of kilograms released, and receiving stream flow. (a) Number of kilograms... diagram which describes each manufacturing, processing, or use operation involving the substance. The...

40 CFR 721.91 - Computation of estimated surface water concentrations: Instructions.

Code of Federal Regulations, 2011 CFR

2011-07-01

... shall be computed for each site using the stream flow rate appropriate for the site according to... computing the equation, the number of kilograms released, and receiving stream flow. (a) Number of kilograms... diagram which describes each manufacturing, processing, or use operation involving the substance. The...

Gene flow of common ash (Fraxinus excelsior L.) in a fragmented landscape.

PubMed

Semizer-Cuming, Devrim; Kjær, Erik Dahl; Finkeldey, Reiner

2017-01-01

Gene flow dynamics of common ash (Fraxinus excelsior L.) is affected by several human activities in Central Europe, including habitat fragmentation, agroforestry expansion, controlled and uncontrolled transfer of reproductive material, and a recently introduced emerging infectious disease, ash dieback, caused by Hymenoscyphus fraxineus. Habitat fragmentation may alter genetic connectivity and effective population size, leading to loss of genetic diversity and increased inbreeding in ash populations. Gene flow from cultivated trees in landscapes close to their native counterparts may also influence the adaptability of future generations. The devastating effects of ash dieback have already been observed in both natural and managed populations in continental Europe. However, potential long-term effects of genetic bottlenecks depend on gene flow across fragmented landscapes. For this reason, we studied the genetic connectivity of ash trees in an isolated forest patch of a fragmented landscape in Rösenbeck, Germany. We applied two approaches to parentage analysis to estimate gene flow patterns at the study site. We specifically investigated the presence of background pollination at the landscape level and the degree of genetic isolation between native and cultivated trees. Local meteorological data was utilized to understand the effect of wind on the pollen and seed dispersal patterns. Gender information of the adult trees was considered for calculating the dispersal distances. We found that the majority of the studied seeds (55-64%) and seedlings (75-98%) in the forest patch were fathered and mothered by the trees within the same patch. However, we determined a considerable amount of pollen flow (26-45%) from outside of the study site, representing background pollination at the landscape level. Limited pollen flow was observed from neighbouring cultivated trees (2%). Both pollen and seeds were dispersed in all directions in accordance with the local wind directions. Whereas there was no positive correlation between pollen dispersal distance and wind speed, the correlation between seed dispersal distance and wind speed was significant (0.71, p < 0.001), indicating that strong wind favours long-distance dispersal of ash seeds. Finally, we discussed the implications of establishing gene conservation stands and the use of enrichment planting in the face of ash dieback.

Gene flow of common ash (Fraxinus excelsior L.) in a fragmented landscape

PubMed Central

Kjær, Erik Dahl; Finkeldey, Reiner

2017-01-01

Gene flow dynamics of common ash (Fraxinus excelsior L.) is affected by several human activities in Central Europe, including habitat fragmentation, agroforestry expansion, controlled and uncontrolled transfer of reproductive material, and a recently introduced emerging infectious disease, ash dieback, caused by Hymenoscyphus fraxineus. Habitat fragmentation may alter genetic connectivity and effective population size, leading to loss of genetic diversity and increased inbreeding in ash populations. Gene flow from cultivated trees in landscapes close to their native counterparts may also influence the adaptability of future generations. The devastating effects of ash dieback have already been observed in both natural and managed populations in continental Europe. However, potential long-term effects of genetic bottlenecks depend on gene flow across fragmented landscapes. For this reason, we studied the genetic connectivity of ash trees in an isolated forest patch of a fragmented landscape in Rösenbeck, Germany. We applied two approaches to parentage analysis to estimate gene flow patterns at the study site. We specifically investigated the presence of background pollination at the landscape level and the degree of genetic isolation between native and cultivated trees. Local meteorological data was utilized to understand the effect of wind on the pollen and seed dispersal patterns. Gender information of the adult trees was considered for calculating the dispersal distances. We found that the majority of the studied seeds (55–64%) and seedlings (75–98%) in the forest patch were fathered and mothered by the trees within the same patch. However, we determined a considerable amount of pollen flow (26–45%) from outside of the study site, representing background pollination at the landscape level. Limited pollen flow was observed from neighbouring cultivated trees (2%). Both pollen and seeds were dispersed in all directions in accordance with the local wind directions. Whereas there was no positive correlation between pollen dispersal distance and wind speed, the correlation between seed dispersal distance and wind speed was significant (0.71, p < 0.001), indicating that strong wind favours long-distance dispersal of ash seeds. Finally, we discussed the implications of establishing gene conservation stands and the use of enrichment planting in the face of ash dieback. PMID:29053740

Water-quality data from an earthen dam site in southern Westchester County, New York, 2015

USGS Publications Warehouse

Chu, Anthony; Noll, Michael L.

2017-10-11

The U.S. Geological Survey, in cooperation with the New York City Department of Environmental Protection, sampled 37 sites in the reservoir area for nutrients, major ions, metals, pesticides and their degradates, volatile organic compounds, temperature, pH, and specific conductance during fall 2015. Data collection was done to characterize the local groundwater-flow system and identify potential sources of seeps from the southern embankment at the Hillview Reservoir. Water-quality samples were collected in accordance with standard U.S. Geological Survey methods at 37 sites in and adjacent to Hillview Reservoir. These 37 sites were sampled to determine (1) baseline water-quality conditions of the saturated, low-permeability sediments that compose the earthen embankment that surrounds the reservoir, (2) water-quality conditions in the southwestern part of the study area in relation to the seeps on the embankment, and (3) temporal variation of water-quality conditions between 2006 and 2015 (not included in this report). The physical parameters and the results of the water-quality analysis from the 37 sites are included in this report and can be downloaded from the U.S. Geological Survey National Water Information System website.

ModBack - simplified contaminant source zone delineation using backtracking

NASA Astrophysics Data System (ADS)

Thielsch, K.; Herold, M.; Ptak, T.

2012-12-01

Contaminated groundwater poses a serious threat to drinking water resources all over the world. Even though contaminated water might be detected in observation wells, a proper clean up is often only successful if the source of the contamination is detected and subsequently removed, contained or remediated. The high costs of groundwater remediation could be possibly significantly reduced if, from the outset, a focus is placed on source zone detection. ModBack combines several existing modelling tools in one easy to use GIS-based interface helping to delineate potential contaminant source zones in the subsurface. The software is written in Visual Basic 3.5 and uses the ArcObjects library to implement all required GIS applications. It can run without modification on any Microsoft Windows based PC with sufficient RAM and at least Microsoft .NET Framework 3.5. Using ModBack requires additional installation of the following software: Processing Modflow Pro 7.0, ModPath, CSTREAM (Bayer-Raich et al., 2003), Golden Software Surfer and Microsoft Excel. The graphical user interface of ModBack is separated into four blocks of procedures dealing with: data input, groundwater modelling, backtracking and analyses. Geographical data input includes all georeferenced information pertaining to the study site. Information on subsurface contamination is gathered either by conventional sampling of monitoring wells or by conducting integral pumping tests at control planes with a specific sampling scheme. Hydraulic data from these pumping tests together with all other available information are then used to set up a groundwater flow model of the study site, which provides the flow field for transport simulations within the subsequent contamination backtracking procedures, starting from the defined control planes. The backtracking results are then analysed within ModBack. The potential areas of contamination source presence or absence are determined based on the procedure used by Jarsjö et al. (2005). The contaminant plume length can be estimated using plume length statistics, first order rate degradation equations or calculations based on site specific hydraulic and chemical parameters. Furthermore, an analytical tool is included to identify the distribution of contaminants across a control plane. All relevant output can be graphically displayed and saved as vector data to be later used in GIS software. ModBack has been already used to delimit the zones of source presence or absence at several test sites. With ModBack, a tool is now available which enables environmental consultants, engineers and environmental agencies to delineate possible sources of contamination already at the planning stage of site investigation and remediation measures, helping to significantly reduce costs of contaminated site management. Bayer-Raich, M., Jarsjö, J., Holder, T. and Ptak, T. (2003): "Numerical estimations of contaminant mass flow rate based on concentration measurements in pumping wells", ModelCare 2002: A Few Steps Closer to Reality, IAHS Publication No. 277, 10-16. Jarsjö, J., Bayer-Raich, M., Ptak, T. (2005): "Monitoring groundwater contamination and delineating source zones at industrial sites: Uncertainty analyses using integral pumping tests", Journal of Contaminant Hydrology, 79, 107-134

Relations of habitat-specific algal assemblages to land use and water chemistry in the Willamette Basin, Oregon

USGS Publications Warehouse

Carpenter, K.D.; Waite, I.R.

2000-01-01

Benthic algal assemblages, water chemistry, and habitat were characterized at 25 stream sites in the Willamette Basin, Oregon, during low flow in 1994. Seventy-three algal samples yielded 420 taxa - Mostly diatoms, blue-green algae, and green algae. Algal assemblages from depositional samples were strongly dominated by diatoms (76% mean relative abundance), whereas erosional samples were dominated by blue-green algae (68% mean relative abundance). Canonical correspondence analysis (CCA) of semiquantitative and qualitative (presence/absence) data sets identified four environmental variables (maximum specific conductance, % open canopy, pH, and drainage area) that were significant in describing patterns of algal taxa among sites. Based on CCA, four groups of sites were identified: Streams in forested basins that supported oligotrophic taxa, such as Diatoma mesodon; small streams in agricultural and urban basins that contained a variety of eutrophic and nitrogen-heterotrophic algal taxa; larger rivers draining areas of mixed land use that supported planktonic, eutrophic, and nitrogen-heterotrophic algal taxa; and streams with severely degraded or absent riparian vegetation (> 75% open canopy) that were dominated by other planktonic, eutrophic, and nitrogen-heterotrophic algal taxa. Patterns in water chemistry were consistent with the algal autecological interpretations and clearly demonstrated relationships between land use, water quality, and algal distribution patterns.

Carbonaceous thin film coating with Fe-N4 site for enhancement of dioxovanadium ion reduction

NASA Astrophysics Data System (ADS)

Maruyama, Jun; Hasegawa, Takahiro; Iwasaki, Satoshi; Fukuhara, Tomoko; Orikasa, Yuki; Uchimoto, Yoshiharu

2016-08-01

It has been found that carbonaceous materials containing a transition metal coordinated by 4 nitrogens in the square-planar configuration (metal-N4 site) on the surface possessed a catalytic activity for various electrochemical reactions related to energy conversion and storage; i.e., oxygen reduction, hydrogen evolution, and quite recently, the electrode reactions in vanadium redox flow batteries (VRFB). The catalyst for the VRFB positive electrode discharge reaction, i.e., the dioxovanadium ion reduction, was formed by coating the surface of cup-stack carbon nanotubes with a carbonaceous thin film with the Fe-N4 site generated by the sublimation, deposition, and pyrolysis of iron phthalocyanine. In this study, the influence of the physical properties of the catalyst on the electrochemical reactions was investigated to optimize the coating. With an increase in the coating, the specific surface area increased, whereas the pore size decreased. The surface Fe concentration was increased in spite of the Fe aggregation inside the carbon matrix. The catalytic activity enhancement was achieved due to the increase in the specific surface area and the surface Fe concentration, but was lowered due to the decrease in the pore size, which was disadvantageous for the penetration of the electrolyte and the mass transfer.

Three multimedia models used at hazardous and radioactive waste sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moskowitz, P.D.; Pardi, R.; Fthenakis, V.M.

1996-02-01

Multimedia models are used commonly in the initial phases of the remediation process where technical interest is focused on determining the relative importance of various exposure pathways. This report provides an approach for evaluating and critically reviewing the capabilities of multimedia models. This study focused on three specific models MEPAS Version 3.0, MMSOILS Version 2.2, and PRESTO-EPA-CPG Version 2.0. These models evaluate the transport and fate of contaminants from source to receptor through more than a single pathway. The presence of radioactive and mixed wastes at a site poses special problems. Hence, in this report, restrictions associated with the selectionmore » and application of multimedia models for sites contaminated with radioactive and mixed wastes are highlighted. This report begins with a brief introduction to the concept of multimedia modeling, followed by an overview of the three models. The remaining chapters present more technical discussions of the issues associated with each compartment and their direct application to the specific models. In these analyses, the following components are discussed: source term; air transport; ground water transport; overland flow, runoff, and surface water transport; food chain modeling; exposure assessment; dosimetry/risk assessment; uncertainty; default parameters. The report concludes with a description of evolving updates to the model; these descriptions were provided by the model developers.« less

Guidelines for model calibration and application to flow simulation in the Death Valley regional groundwater system

USGS Publications Warehouse

Hill, M.C.; D'Agnese, F. A.; Faunt, C.C.

2000-01-01

Fourteen guidelines are described which are intended to produce calibrated groundwater models likely to represent the associated real systems more accurately than typically used methods. The 14 guidelines are discussed in the context of the calibration of a regional groundwater flow model of the Death Valley region in the southwestern United States. This groundwater flow system contains two sites of national significance from which the subsurface transport of contaminants could be or is of concern: Yucca Mountain, which is the potential site of the United States high-level nuclear-waste disposal; and the Nevada Test Site, which contains a number of underground nuclear-testing locations. This application of the guidelines demonstrates how they may be used for model calibration and evaluation, and also to direct further model development and data collection.Fourteen guidelines are described which are intended to produce calibrated groundwater models likely to represent the associated real systems more accurately than typically used methods. The 14 guidelines are discussed in the context of the calibration of a regional groundwater flow model of the Death Valley region in the southwestern United States. This groundwater flow system contains two sites of national significance from which the subsurface transport of contaminants could be or is of concern: Yucca Mountain, which is the potential site of the United States high-level nuclear-waste disposal; and the Nevada Test Site, which contains a number of underground nuclear-testing locations. This application of the guidelines demonstrates how they may be used for model calibration and evaluation, and also to direct further model development and data collection.

Prediction, time variance, and classification of hydraulic response to recharge in two karst aquifers

USGS Publications Warehouse

Long, Andrew J.; Mahler, Barbara J.

2013-01-01

Many karst aquifers are rapidly filled and depleted and therefore are likely to be susceptible to changes in short-term climate variability. Here we explore methods that could be applied to model site-specific hydraulic responses, with the intent of simulating these responses to different climate scenarios from high-resolution climate models. We compare hydraulic responses (spring flow, groundwater level, stream base flow, and cave drip) at several sites in two karst aquifers: the Edwards aquifer (Texas, USA) and the Madison aquifer (South Dakota, USA). A lumped-parameter model simulates nonlinear soil moisture changes for estimation of recharge, and a time-variant convolution model simulates the aquifer response to this recharge. Model fit to data is 2.4% better for calibration periods than for validation periods according to the Nash–Sutcliffe coefficient of efficiency, which ranges from 0.53 to 0.94 for validation periods. We use metrics that describe the shapes of the impulse-response functions (IRFs) obtained from convolution modeling to make comparisons in the distribution of response times among sites and between aquifers. Time-variant IRFs were applied to 62% of the sites. Principal component analysis (PCA) of metrics describing the shapes of the IRFs indicates three principal components that together account for 84% of the variability in IRF shape: the first is related to IRF skewness and temporal spread and accounts for 51% of the variability; the second and third largely are related to time-variant properties and together account for 33% of the variability. Sites with IRFs that dominantly comprise exponential curves are separated geographically from those dominantly comprising lognormal curves in both aquifers as a result of spatial heterogeneity. The use of multiple IRF metrics in PCA is a novel method to characterize, compare, and classify the way in which different sites and aquifers respond to recharge. As convolution models are developed for additional aquifers, they could contribute to an IRF database and a general classification system for karst aquifers.

Hydrologic Data Summary for the Northeast Creek/Fresh Meadow Estuary, Acadia National Park, Maine, 2000-2001

USGS Publications Warehouse

Caldwell, James M.; Culbertson, Charles W.

2007-01-01

The U.S. Geological Survey, in cooperation with the National Park Service, collected data in Northeast Creek estuary, Mt. Desert Island, Maine, to establish baseline water-quality conditions including estuarine nutrient concentrations. Five sampling sites in Northeast Creek were established and monitored continuously for temperature and specific conductance during May to November, 2000 and 2001. Stream stage, which was affected by ocean tidal dynamics, was recorded at the most downstream site and at one upstream site. Discrete water samples for nutrient concentrations were collected biweekly during May to November, 2000 and 2001, at the five sampling sites, and an additional site seaward of the estuary mouth. Results indicated that the salinity regime of Northeast Creek estuary is dynamic and highly regulated by strong seasonal variations in freshwater runoff, as well as limited seawater exchange caused by a constriction at the bridge, at the downstream end of the estuary. Oligohaline conditions (0.5-5 practical salinity units) occasionally extend to the estuary mouth. During other periods oligohaline and mesohaline (5-20 practical salinity units) conditions exist in some areas of the estuary; polyhaline/marine (20-35 practical salinity units) conditions occasionally exist near the mouth. A saltwater wedge in the bottom water, due to density stratification, was observed to migrate upstream as fresh surface-water inputs diminished during the onset of summer low-flow conditions. Although specific conductance ranged widely at most sites because of tidal influences, other water-quality constituents, including nutrient and chlorophyll-a concentrations, exhibited seasonal distribution patterns in which maximum levels generally occurred in early to mid-summer and again in the fall over both field seasons.