Comparison of wetlands in different hydrogeological settings under conditions of extreme climate variability

USGS Publications Warehouse

Winter, T.; Rosenberry, D.; Kelly, E.; LaBaugh, J.

2005-01-01

Wetlands in the Cottonwood Lake area in North Dakota, USA, are underlain by poorly permeable till and have little groundwater input. Lakes and wetlands in the Shingobee River headwaters in Minnesota are underlain by permeable sand and have substantial groundwater input. Hydrological, chemical, and biological characteristics of these ecosystems have been monitored since 1977. Both sites experienced the second worst drought of the 20th century followed by the wettest period in more than a century. At Cottonwood Lake, plants that invaded the dry wetlands during the drought were flooded during the wet period and became a food source for animals. This resulted in successive substantial population increases and declines of plankton, invertebrates, amphibians and waterfowl. Substantial groundwater input buffered the lakes and wetlands in the Shingobee area against the changing water conditions. Only subtle changes in water chemistry and plankton populations were observed during the transition from drought to deluge.

The structural basis of secondary active transport mechanisms.

PubMed

Forrest, Lucy R; Krämer, Reinhard; Ziegler, Christine

2011-02-01

Secondary active transporters couple the free energy of the electrochemical potential of one solute to the transmembrane movement of another. As a basic mechanistic explanation for their transport function the model of alternating access was put forward more than 40 years ago, and has been supported by numerous kinetic, biochemical and biophysical studies. According to this model, the transporter exposes its substrate binding site(s) to one side of the membrane or the other during transport catalysis, requiring a substantial conformational change of the carrier protein. In the light of recent structural data for a number of secondary transport proteins, we analyze the model of alternating access in more detail, and correlate it with specific structural and chemical properties of the transporters, such as their assignment to different functional states in the catalytic cycle of the respective transporter, the definition of substrate binding sites, the type of movement of the central part of the carrier harboring the substrate binding site, as well as the impact of symmetry on fold-specific conformational changes. Besides mediating the transmembrane movement of solutes, the mechanism of secondary carriers inherently involves a mechanistic coupling of substrate flux to the electrochemical potential of co-substrate ions or solutes. Mainly because of limitations in resolution of available transporter structures, this important aspect of secondary transport cannot yet be substantiated by structural data to the same extent as the conformational change aspect. We summarize the concepts of coupling in secondary transport and discuss them in the context of the available evidence for ion binding to specific sites and the impact of the ions on the conformational state of the carrier protein, which together lead to mechanistic models for coupling. Copyright © 2010 Elsevier B.V. All rights reserved.

Water-quality trends and constituent-transport analysis for selected sampling sites in the Milltown Reservoir/Clark Fork River Superfund Site in the upper Clark Fork Basin, Montana, water years 1996–2015

USGS Publications Warehouse

Sando, Steven K.; Vecchia, Aldo V.

2016-07-20

During the extended history of mining in the upper Clark Fork Basin in Montana, large amounts of waste materials enriched with metallic contaminants (cadmium, copper, lead, and zinc) and the metalloid trace element arsenic were generated from mining operations near Butte and milling and smelting operations near Anaconda. Extensive deposition of mining wastes in the Silver Bow Creek and Clark Fork channels and flood plains had substantial effects on water quality. Federal Superfund remediation activities in the upper Clark Fork Basin began in 1983 and have included substantial remediation near Butte and removal of the former Milltown Dam near Missoula. To aid in evaluating the effects of remediation activities on water quality, the U.S. Geological Survey began collecting streamflow and water-quality data in the upper Clark Fork Basin in the 1980s.Trend analysis was done on specific conductance, selected trace elements (arsenic, copper, and zinc), and suspended sediment for seven sampling sites in the Milltown Reservoir/Clark Fork River Superfund Site for water years 1996–2015. The most upstream site included in trend analysis is Silver Bow Creek at Warm Springs, Montana (sampling site 8), and the most downstream site is Clark Fork above Missoula, Montana (sampling site 22), which is just downstream from the former Milltown Dam. Water year is the 12-month period from October 1 through September 30 and is designated by the year in which it ends. Trend analysis was done by using a joint time-series model for concentration and streamflow. To provide temporal resolution of changes in water quality, trend analysis was conducted for four sequential 5-year periods: period 1 (water years 1996–2000), period 2 (water years 2001–5), period 3 (water years 2006–10), and period 4 (water years 2011–15). Because of the substantial effect of the intentional breach of Milltown Dam on March 28, 2008, period 3 was subdivided into period 3A (October 1, 2005–March 27, 2008) and period 3B (March 28, 2008–September 30, 2010) for the Clark Fork above Missoula (sampling site 22). Trend results were considered statistically significant when the statistical probability level was less than 0.01.In conjunction with the trend analysis, estimated normalized constituent loads (hereinafter referred to as “loads”) were calculated and presented within the framework of a constituent-transport analysis to assess the temporal trends in flow-adjusted concentrations (FACs) in the context of sources and transport. The transport analysis allows assessment of temporal changes in relative contributions from upstream source areas to loads transported past each reach outflow.Trend results indicate that FACs of unfiltered-recoverable copper decreased at the sampling sites from the start of period 1 through the end of period 4; the decreases ranged from large for one sampling site (Silver Bow Creek at Warm Springs [sampling site 8]) to moderate for two sampling sites (Clark Fork near Galen, Montana [sampling site 11] and Clark Fork above Missoula [sampling site 22]) to small for four sampling sites (Clark Fork at Deer Lodge, Montana [sampling site 14], Clark Fork at Goldcreek, Montana [sampling site 16], Clark Fork near Drummond, Montana [sampling site 18], and Clark Fork at Turah Bridge near Bonner, Montana [sampling site 20]). For period 4 (water years 2011–15), the most notable changes indicated for the Milltown Reservoir/Clark Fork River Superfund Site were statistically significant decreases in FACs and loads of unfiltered-recoverable copper for sampling sites 8 and 22. The period 4 changes in FACs of unfiltered-recoverable copper for all other sampling sites were not statistically significant.Trend results indicate that FACs of unfiltered-recoverable arsenic decreased at the sampling sites from period 1 through period 4 (water years 1996–2015); the decreases ranged from minor (sampling sites 8–20) to small (sampling site 22). For period 4 (water years 2011–15), the most notable changes indicated for the Milltown Reservoir/Clark Fork River Superfund Site were statistically significant decreases in FACs and loads of unfiltered-recoverable arsenic for sampling site 8 and near statistically significant decreases for sampling site 22. The period 4 changes in FACs of unfiltered-recoverable arsenic for all other sampling sites were not statistically significant.Trend results indicate that FACs of suspended sediment decreased at the sampling sites from period 1 through period 4 (water years 1996–2015); the decreases ranged from moderate (sampling site 8) to small (sampling sites 11–22). For period 4 (water years 2011–15), the changes in FACs of suspended sediment were not statistically significant for any sampling sites.The reach of the Clark Fork from Galen to Deer Lodge is a large source of metallic contaminants and suspended sediment, which strongly affects downstream transport of those constituents. Mobilization of copper and suspended sediment from flood-plain tailings and the streambed of the Clark Fork and its tributaries within the reach results in a contribution of those constituents that is proportionally much larger than the contribution of streamflow from within the reach. Within the reach from Galen to Deer Lodge, unfiltered-recoverable copper loads increased by a factor of about 4 and suspended-sediment loads increased by a factor of about 5, whereas streamflow increased by a factor of slightly less than 2. For period 4 (water years 2011–15), unfiltered-recoverable copper and suspended-sediment loads sourced from within the reach accounted for about 41 and 14 percent, respectively, of the loads at Clark Fork above Missoula (sampling site 22), whereas streamflow sourced from within the reach accounted for about 4 percent of the streamflow at sampling site 22. During water years 1996–2015, decreases in FACs and loads of unfiltered-recoverable copper and suspended sediment for the reach generally were proportionally smaller than for most other reaches.Unfiltered-recoverable copper loads sourced within the reaches of the Clark Fork between Deer Lodge and Turah Bridge near Bonner (just upstream from the former Milltown Dam) were proportionally smaller than contributions of streamflow sourced from within the reaches; these reaches contributed proportionally much less to copper loading in the Clark Fork than the reach between Galen and Deer Lodge. Although substantial decreases in FACs and loads of unfiltered-recoverable copper and suspended sediment were indicated for Silver Bow Creek at Warm Springs (sampling site 8), those substantial decreases were not translated to downstream reaches between Deer Lodge and Turah Bridge near Bonner. The effect of the reach of the Clark Fork from Galen to Deer Lodge as a large source of copper and suspended sediment, in combination with little temporal change in those constituents for the reach, contributes to this pattern.With the removal of the former Milltown Dam in 2008, substantial amounts of contaminated sediments that remained in the Clark Fork channel and flood plain in reach 9 (downstream from Turah Bridge near Bonner) became more available for mobilization and transport than before the dam removal. After the removal of the former Milltown Dam, the Clark Fork above Missoula (sampling site 22) had statistically significant decreases in FACs of unfiltered-recoverable copper in period 3B (March 28, 2008, through water year 2010) that continued in period 4 (water years 2011–15). Also, decreases in FACs of unfiltered-recoverable arsenic and suspended sediment were indicated for period 4 at this site. The decrease in FACs of unfiltered-recoverable copper for sampling site 22 during period 4 was proportionally much larger than the decrease for the Clark Fork at Turah Bridge near Bonner (sampling site 20). Net mobilization of unfiltered-recoverable copper and arsenic from sources within reach 9 are smaller for period 4 than for period 1 when the former Milltown Dam was in place, providing evidence that contaminant source materials have been substantially reduced in reach 9.

Effects of slope aspect and site elevation on seasonal soil carbon dynamics in a forest catchment in the Austrian Limestone Alps

NASA Astrophysics Data System (ADS)

Kobler, Johannes; Zehetgruber, Bernhard; Jandl, Robert; Dirnböck, Thomas; Schindlbacher, Andreas

2017-04-01

Own to the complexity of landscape morphology, mountainous landscapes are characterized by substantial changes of site parameters (i.e. elevation, slope, aspect) within short distances. As these site parameters affect the spatial-temporal dynamics of landscape climate and therefore the spatial patterns of forest carbon (C) distribution, they pose a substantial impact on landscape-related soil C dynamics. Aspect and elevation form natural temperature gradients and thereby can be used as a surrogate to infer to potential climate change effects on forest C. We aimed at studying how slope aspect affected soil respiration, soil C stocks, tree increment and litter production along two elevation gradients in the Zöbelboden catchment, northern limestone Alps, Austria during 2015 and 2016. A preliminary assessment showed that soil respiration was significantly higher at the west facing slope across all elevations. Soil temperature was only slightly higher at the west facing slope, and warmer soil only partly explained the large difference in soil respiration between east and west facing slopes. Aspect had no clear effect on soil moisture, which seemed to be strongly affected by stocking density at the different forest sites. The dense grassy ground vegetation at some of the sites further seems to play a key role in determining soil respiration rates and litter input. A detailed analysis and C-budgets along the elevation gradients will be presented at the conference.

How Single-site Mutation Affects HP Lattice Proteins

NASA Astrophysics Data System (ADS)

Shi, Guangjie; Landau, David P.; Vogel, Thomas; Wüst, Thomas; Li, Ying Wai

2014-03-01

We developed a heuristic method based on Wang-Landauand multicanonical sampling for determining the ground-state degeneracy of HP lattice proteins . Our algorithm allowed the most precise estimations of the (sometimes substantial) ground-state degeneracies of some widely studied HP sequences. We investigated the effects of single-site mutation on specific long HP lattice proteins comprehensively, including structural changes in ground-states, changes of ground-state degeneracy and thermodynamic properties of the systems. Both extremely sensitive and insensitive cases have been observed; consequently, properties such as specific heat, tortuosities etc. may be either largely unaffected or may change significantly due to mutation. More interestingly, mutation can even induce a lower ground-state energy in a few cases. Supported by NSF.

Habitat stress initiates changes in composition, CO2 gas exchange and C-allocation as life traits in biological soil crusts.

PubMed

Colesie, Claudia; Green, T G Allan; Haferkamp, Ilka; Büdel, Burkhard

2014-10-01

Biological soil crusts (BSC) are the dominant functional vegetation unit in some of the harshest habitats in the world. We assessed BSC response to stress through changes in biotic composition, CO2 gas exchange and carbon allocation in three lichen-dominated BSC from habitats with different stress levels, two more extreme sites in Antarctica and one moderate site in Germany. Maximal net photosynthesis (NP) was identical, whereas the water content to achieve maximal NP was substantially lower in the Antarctic sites, this apparently being achieved by changes in biomass allocation. Optimal NP temperatures reflected local climate. The Antarctic BSC allocated fixed carbon (tracked using (14)CO2) mostly to the alcohol soluble pool (low-molecular weight sugars, sugar alcohols), which has an important role in desiccation and freezing resistance and antioxidant protection. In contrast, BSC at the moderate site showed greater carbon allocation into the polysaccharide pool, indicating a tendency towards growth. The results indicate that the BSC of the more stressed Antarctic sites emphasise survival rather than growth. Changes in BSC are adaptive and at multiple levels and we identify benefits and risks attached to changing life traits, as well as describing the ecophysiological mechanisms that underlie them.

Students Seeking Information for Their Masters' Theses: The Effect of the Internet

ERIC Educational Resources Information Center

Junni, Paulina

2007-01-01

Introduction: The Internet has radically changed the global availability of scholarly publications. Today, a substantial part of the resources accessible for researchers and university students are offered through electronic site licenses, making the supply of easily obtainable information larger than ever. This brings forth an important question:…

Stream power framework for predicting geomorphic change: The 2013 Colorado Front Range flood

NASA Astrophysics Data System (ADS)

Yochum, Steven E.; Sholtes, Joel S.; Scott, Julian A.; Bledsoe, Brian P.

2017-09-01

The Colorado Front Range flood of September 2013 induced a diverse range of geomorphic changes along numerous stream corridors, providing an opportunity to assess responses to a large flood in a semiarid landscape. We defined six classes of geomorphic change related to peak unit stream power and valley confinement for 531 stream reaches over 226 km, spanning a gradient of channel scales and slope. Geomorphic change was generally driven by erosion of channel margins in confined reaches and by a combination of deposition and erosion in unconfined reaches. The magnitude of geomorphic change typically increased with unit stream power (ω), with greater responses observed in unconfined channels. Cumulative logit modeling indicated that total stream power or unit stream power, unit stream power gradient, and valley confinement are significant predictors of geomorphic response for this flood event. Based on this dataset, thresholds for geomorphic adjustment were defined. For channel slopes < 3%, we noted a credible potential for substantial channel widening with ω > 230 W/m2 (16 lb/ft-s; at least 10% of the investigated sites experienced substantial channel widening) and a credible potential for avulsions, braiding, and loss of adjacent road embankments associated with ω > 480 W/m2 (33 lb/ft-s; at least 10% of the investigated sites experienced such geomorphic change). Infrequent to numerous eroded banks were very likely with ω > 700 W/m2 (48 lb/ft-s), with substantial channel widening or major geomorphic change shifting from credible to likely. Importantly, in reaches where there were large reductions in ω as the valley form shifted from confined to relatively unconfined, large amounts of deposition-induced, reach-scale geomorphic change occurred in some locations at relatively low ω. Additionally, alluvial channels with slopes > 3% had greater resistance to geomorphic change, likely caused by armoring by larger bed material and increased flow resistance from enhanced bedforms. Finally, we describe how these results can potentially be used by practitioners for assessing the risk of geomorphic change when evaluating current or planned conditions.

Perceptions of Barriers and Facilitators During Implementation of a Complex Model of Group Prenatal Care in Six Urban Sites

PubMed Central

Novick, Gina; Womack, Julie A.; Lewis, Jessica; Stasko, Emily C.; Rising, Sharon S.; Sadler, Lois S.; Cunningham, Shayna C.; Tobin, Jonathan N.; Ickovics, Jeannette R.

2016-01-01

Group prenatal care improves perinatal outcomes, but implementing this complex model places substantial demands on settings designed for individual care. To describe perceived barriers and facilitators to implementing and sustaining Centering Pregnancy Plus (CP+) group prenatal care, 24 in-depth interviews were conducted with 22 clinicians, staff, administrators, and study personnel in six of the 14 sites of a randomized trial of the model. All sites served low-income, minority women. Sites for the present evaluation were selected for variation in location, study arm, and initial implementation response. Implementing CP+ was challenging in all sites, requiring substantial adaptations of clinical systems. All sites had barriers to meeting the model’s demands, but how sites responded to these barriers affected whether implementation thrived or struggled. Thriving sites had organizational cultures that supported innovation, champions who advocated for CP+, and staff who viewed logistical demands as manageable hurdles. Struggling sites had bureaucratic organizational structures and lacked buy-in and financial resources, and staff were overwhelmed by the model’s challenges. Findings suggested that implementing and sustaining health care innovation requires new practices and different ways of thinking, and health systems may not fully recognize the magnitude of change required. Consequently, evidence-based practices are modified or discontinued, and outcomes may differ from those in the original controlled studies. Before implementing new models of care, clinical settings should anticipate model demands and assess capacity for adapting to the disruptions of innovation. PMID:26340483

Ranking site vulnerability to increasing temperatures in southern Appalachian brook trout streams in Virginia: An exposure-sensitivity approach

Treesearch

Bradly A. Trumbo; Keith H. Nislow; Jonathan Stallings; Mark Hudy; Eric P. Smith; Dong-Yun Kim; Bruce Wiggins; Charles A. Dolloff

2014-01-01

Models based on simple air temperature–water temperature relationships have been useful in highlighting potential threats to coldwater-dependent species such as Brook Trout Salvelinus fontinalis by predicting major losses of habitat and substantial reductions in geographic distribution. However, spatial variability in the relationship between changes...

Selected Natural Attenuation Monitoring Data, Operable Unit 1, Naval Undersea Warfare Center, Division Keyport, Washington, June 2005

USGS Publications Warehouse

Dinicola, Richard S.; Huffman, R.L.

2006-01-01

Previous investigations have shown that natural attenuation and biodegradation of chlorinated volatile organic compounds (VOCs) are substantial in shallow ground water beneath the 9-acre former landfill at Operable Unit 1 (OU-1), Naval Undersea Warfare Center, Division Keyport, Washington. The U.S. Geological Survey (USGS) has continued to monitor ground-water geochemistry to assure that conditions remain favorable for contaminant biodegradation. This report presents the ground-water geochemical and selected VOC data collected at OU-1 by the USGS during June 21-24, 2005, in support of long-term monitoring for natural attenuation. For June 2005, the strongly reducing conditions (sulfate reduction and methanogenesis) most favorable for reductive dechlorination of chlorinated VOCs were detected in fewer upper-aquifer wells than were detected during 2004. Redox conditions in ground water from the intermediate aquifer just downgradient of the landfill remained somewhat favorable for reductive dechlorination. Overall, the changes in redox conditions observed at individual wells have not been consistent or substantial throughout either the upper or the intermediate aquifers. In apparent contrast to changes in redox conditions, the chlorinated VOC concentrations were lower than previously measured in many of the piezometers in the northern phytoremediation plantation. The decrease in contaminant concentrations beneath the northern plantation and the end-product (ethane and ethene) evidence for reductive dechlorination are consistent with 2000-04 results. In the southern phytoremediation plantation, changes in chlorinated VOC concentrations were variable. Most notable was a substantial decrease in the sum of trichloroethene, cis-1,2-dichloroethene, and vinyl chloride concentrations at piezometer P1-9 from 75,000 to 1,000 micrograms per liter between 2004 and 2005. The high concentrations of the reductive dechlorination end-products ethane and ethene measured at the most contaminated sites (P1-6 and P1-7), as well as measurable concentrations at sites P1-9 and P1-10, are reliable evidence that reductive dechlorination of chlorinated VOCs is ongoing in the southern plantation. In the 10 passive-diffusion samplers deployed beneath the marsh stream, the highest chlorinated VOC concentrations measured were at a site (S-4) about midway along the sampled stream reach. In 2005, the sum of trichloroethene, cis-1,2-dichloroethene, and vinyl chloride concentrations increased nearly twofold in comparison to 2004. It is not certain that the apparent increase in concentrations is representative of site conditions. However, the chlorinated VOC concentrations have increased each time at the two most contaminated passive-diffusion sampler sites that have been sampled for multiple years. In the marsh stream, chlorinated VOC concentrations in surface water were low at the site (SW-S6) near the upgradient margin of the former landfill. Concentrations in the stream increased substantially after flowing past the southern phytoremediation plantation to the downstream site (MA-12). Overall, the 2005 data were consistent with previous findings of continued biodegradation of chlorinated VOCs in ground water, along with continued discharge of some chlorinated VOCs to surface water in the marsh stream.

Conserving Critical Sites for Biodiversity Provides Disproportionate Benefits to People

PubMed Central

Larsen, Frank W.; Turner, Will R.; Brooks, Thomas M.

2012-01-01

Protecting natural habitats in priority areas is essential to halt the loss of biodiversity. Yet whether these benefits for biodiversity also yield benefits for human well-being remains controversial. Here we assess the potential human well-being benefits of safeguarding a global network of sites identified as top priorities for the conservation of threatened species. Conserving these sites would yield benefits – in terms of a) climate change mitigation through avoidance of CO2 emissions from deforestation; b) freshwater services to downstream human populations; c) retention of option value; and d) benefits to maintenance of human cultural diversity – significantly exceeding those anticipated from randomly selected sites within the same countries and ecoregions. Results suggest that safeguarding sites important for biodiversity conservation provides substantial benefits to human well-being. PMID:22666337

Changes in snoring during natural sleep identified by acoustic crest factor analysis at different times of night.

PubMed

Hill, P D; Osman, E Z; Osborne, J E; Lee, B W

2000-12-01

Sleep nasendoscopy can be used to identify the site of snoring but questions remain about how well a short assessment during drug-induced sleep reflects the natural condition. To investigate the uniformity of snoring during natural sleep we studied five patients (three men, two women) referred by their GPs for treatment of their snoring. A digital audio tape recorder captured the free-field snore sound at different times of night in hospital. Acoustic Crest Factor values were calculated on the 15 recordings made, having previously demonstrated that high crest factor values distinguish palatal from non-palatal snoring at sleep nasendoscopy. Some recordings showed reproducibility, but others showed substantial changes between recordings an hour apart. We infer that the snoring mechanism may change in some individuals during the night, with or without a change of snore site. We conclude a single recording, as in sleep nasendoscopy, may not be representative.

Ecosystem carbon loss with woody plant invasion of grasslands.

PubMed

Jackson, Robert B; Banner, Jay L; Jobbágy, Esteban G; Pockman, William T; Wall, Diana H

2002-08-08

The invasion of woody vegetation into deserts, grasslands and savannas is generally thought to lead to an increase in the amount of carbon stored in those ecosystems. For this reason, shrub and forest expansion (for example, into grasslands) is also suggested to be a substantial, if uncertain, component of the terrestrial carbon sink. Here we investigate woody plant invasion along a precipitation gradient (200 to 1,100 mm yr(-1)) by comparing carbon and nitrogen budgets and soil delta(13)C profiles between six pairs of adjacent grasslands, in which one of each pair was invaded by woody species 30 to 100 years ago. We found a clear negative relationship between precipitation and changes in soil organic carbon and nitrogen content when grasslands were invaded by woody vegetation, with drier sites gaining, and wetter sites losing, soil organic carbon. Losses of soil organic carbon at the wetter sites were substantial enough to offset increases in plant biomass carbon, suggesting that current land-based assessments may overestimate carbon sinks. Assessments relying on carbon stored from woody plant invasions to balance emissions may therefore be incorrect.

Detecting warning signs of trouble within population fluctuations: using capture-recapture modeling to uncover changes in population dynamics leading to declines

USGS Publications Warehouse

Spendelow, J.A.; Nichols, J.D.; Kendall, W.L.; Hines, J.E.; Hatfield, J.S.; Nisbet, I.C.T.

2004-01-01

An intensive mark-recapture/resighting program has been carried out on the Roseate Terns nesting at Falkner Island, Connecticut, since the late 1980s as part of a regional study of the metapopulation dynamics and ecology of the endangered Northwest Atlantic breeding population of this species. Substantial losses of tern eggs and chicks to predation at this colony site began in 1996 when at least five Black-crowned Night-Herons started nocturnal raids. This depredation has been a major factor in the reduction of productivity from an average of about 1.0 chicks/pair for the 10 years before night-heron predation began to as low as about 0.2 chicks/pair in 2002. Recent capture-recapture modelling analyses have detected other important impacts on the population dynamics of the Roseate Terns at this site including a reduction by about half in the 'development-of-residency' rates of first-time breeders, and a substantial decline in the local 'survival-and-fidelity' rates of experienced breeders believed due mostly to increased immigration rates to other colony sites.

Skin blood flow response in the rat model of wound healing: expression of vasoactive factors.

PubMed

Rendell, Marc S; Johnson, Mark L; Smith, Denae; Finney, David; Capp, Christopher; Lammers, Rebecca; Lancaster, Scott

2002-09-01

Although the microvascular blood flow response to wounding is predominantly vasodilation at skin sites with nutritive capillary perfusion (NUTR), there is a significant vasoconstrictive response at sites with high arteriovenous perfusion (AV). There may be a difference between NUTR and AV sites in the vasoactive factors which mediate the blood flow response to wounding. We measured the levels of mRNA expression of several potential mediators of the blood flow response to assess this possible difference. We measured skin blood flow at wounds placed at the back, a NUTR site, and at the paw, an AV site, in 12 Wistar Kyoto rats. Measurements were performed at baseline and then at 7 days post wounding. There was a significant increase in blood flow at back wound sites, with a rise from 4.1 +/- 0.3 ml/min/100 g to 9.8 +/- 1.9 ml/min/100 g. At the undisturbed wound perimeter, outside the zone of granulation tissue, flow rose to 7.3 +/- 1.1 ml/min/100 g. At the paw wound site, Day 0 flow was 8.8 +/- 0.8 ml/min/100 g. At 7 days, there was a significant decrease in flow at wound center to 5.5 +/- 0.5 ml/min/100 g. We measured the levels of inducible nitric oxide synthetase (iNOS), endothelin, endothelin receptor, vascular endothelial growth factor (VEGF), and keratinocyte growth factor (KGF) gene mRNAs using reverse transcriptase PCR. There was a 10-fold increase in NOS mRNA in granulation tissue of both wounds on Day 7. There was a lesser but still substantial increase in the wound perimeter tissue. Levels of endothelin mRNA in the wound and wound perimeter were significantly lower at the paw than at the back. At baseline, the level of endothelin receptor B (ETrB) mRNA was greater at the back than at the paw. Wounding resulted in a substantial increase in EtrB mRNA levels in granulation tissue, reaching the same level at the back and paw wounds. There was also a substantial rise in EtrB mRNA levels at the paw wound perimeter, so that there was a reversal of the baseline condition, with paw levels actually surpassing the levels at the back perimeter. Thus, we have found significant changes in mediators both of vasoconstriction and vasodilation affecting the healing wound. These changes affect NUTR and AV sites in different ways. These results demonstrate the complexity of the regulatory processes controlling microvascular blood flow in wound healing.

Radionuclide solubility and speciation studies for the Yucca Mountain site characterization project

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nitsche, H.; Roberts, K.; Prussin, T.

1992-12-01

Yucca Mountain, Nevada, USA, is being investigated for its suitability as a potential site for a geologic nuclear waste repository. As part of the site characterization studies, actinide solubilities and speciations were studied at pH 6, 7, and 8.5 at 25{degrees}C in two different groundwaters from the vicinity of Yucca Mountain. The groundwaters differ substantially in total dissolved carbonate concentration, and to a lesser extent in ionic strength. In the waters with higher carbonate content, the solubilities of neptunium(V) decreased, whereas those americium(III) increased at 25{degrees}KC and decreased at 60{degrees}C. The solids formed were sodium neptunium carbonates and americium hydroxycarbonates.more » Plutonium solubilities did not significantly change with changing water composition because the solubility-controlling solids were mostly amorphous Pu(IV) polymers that contained only small amounts of carbonate.« less

Radionuclide solubility and speciation studies for the Yucca Mountain site characterization project

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nitsche, H.; Roberts, K.; Prussin, T.

1993-12-31

Yucca Mountain, Nevada, U.S.A., is being investigated for its suitability as a potential site for a geologic nuclear waste repository. As part of the site characterization studies, actinide solubilities and speciations were studied at pH 6, 7, and 8.5 at 25{degrees} and 60{degrees}C in two different groundwaters from the vicinity of Yucca Mountain. The groundwaters differ substantially in total dissolved carbonate concentration, and to a lesser extent in ionic strength. In the waters with higher carbonate content, the solubilities of neptunium(V) decreased, whereas those of americium (III) increased at 25{degrees}C and decreased at 60{degrees}C. The solids formed were sodium neptuniummore » carbonates and americium hydroxycarbonates. Plutonium solubilities did not significantly change with changing water composition because the solubility-controlling solids were mostly amorphous Pu(IV) polymers that contained only small amounts of carbonate.« less

Solar dimming above temperate forests and its impact on local climate

NASA Astrophysics Data System (ADS)

Tudoroiu, M.; Genesio, L.; Gioli, B.; Schume, H.; Knohl, A.; Brümmer, C.; Miglietta, F.

2018-06-01

Vegetation has a substantial impact on the local climate. Land cover changes through afforestation or deforestation can amplify or mitigate climate warming by changes in biophysical and biogeochemical mechanisms. In the montane to subalpine area of the Eastern Alps in Europe, where forests have constantly expanded in the last four decades, data of meteorological stations show a consistent reduction in incoming global radiation for the period 2000–2015. To assess the potential role of forests in contributing to such a reduction, three site pairs in Central Europe with neighbouring forest and non-forest sites were analysed. In all the pairs, a lower amount of incoming radiation was recorded at the forest site. When biophysical mechanisms such as albedo, surface roughness and Bowen ratio changes were modelled together with changes in global radiation, the total radiative forcing accounted for a rate of change in air temperature was equal to 0.032 °C ± 0.01 °C per Wm‑2. These results suggest that local climate is influenced by land cover change through afforestation both via albedo and radiation feedbacks but also by means of indirect biophysical and species-dependent mechanisms. The data obtained for the site pairs in Central Europe are finally discussed to infer the occurrence of similar forest-driven effects in the Eastern Alps which may explain part of the solar dimming observed in high elevation weather stations.

Geomorphic changes caused by the 2011 flood at selected sites along the lower Missouri River and comparison to historical floods: Chapter H in 2011 floods of the central United States

USGS Publications Warehouse

Juracek, Kyle E.

2014-01-01

An analysis of recent and historical U.S. Geological Survey streamgage information was used to assess geomorphic changes caused by the 2011 flood, in comparison to selected historical floods, at three streamgage sites along the lower Missouri River—Sioux City, Iowa; Omaha, Nebraska; and Kansas City, Missouri. Channel-width change was not evident at the three streamgage sites following the 2011 flood and likely was inhibited by bank stabilization. Pronounced changes in channel-bed elevation were indicated. At Sioux City and Omaha, the geomorphic effects of the 2011 flood were similar in terms of the magnitude of channelbed scour and recovery. At both sites, the 2011 flood caused pronounced scour (about 3 feet) of the channel bed; however, at Omaha, most of the channel-bed scour occurred after the flood had receded. More than 1 year after the flood, the channel bed had only partially recovered (about 1 foot) at both sites. Pronounced scour (about 3 feet at Sioux City and about 1.5 feet at Omaha) also was caused by the 1952 flood, which had a substantially larger peak discharge but was much shorter in duration at both sites. Again, at Omaha, most of the channel- bed scour occurred after the flood had receded. At Sioux City, substantial recovery of the channel bed (about 2.5 feet) was documented 1 year after the 1952 flood. Recovery to the pre-flood elevation was complete by April 1954. The greater recovery following the 1952 flood, compared to the 2011 flood, likely was related to a more abundant sediment supply because the flood predated the completion of most of the main-stem dam, channelization, and bank stabilization projects. At Omaha, following the 1952 flood, the channel bed never fully recovered to its pre-flood elevation. The geomorphic effect of the 2011 flood at Kansas City was fill (about 1 foot) on the channel bed followed by relative stability. The 1952 flood, which had a substantially larger peak discharge but was much shorter in duration, caused modest fill (about 0.5 foot) on the channel bed. The 1993 flood, which also had a substantially larger peak discharge but was much shorter in duration, caused pronounced scour of the channel bed (possibly as much as 4 feet). Similar to the floods at Omaha, much of the channel-bed scour at Kansas City occurred after the 1993 flood had receded. More than 1 year after the 1993 flood, following partial recovery (about 1 foot), the channel bed had stabilized, at least temporarily. Following the 1993 flood, the channel bed never fully recovered to its pre-flood elevation. For each flood in the post-dam era that resulted in substantial channel-bed scour (Sioux City in 2011, Omaha in 2011, Kansas City in 1993), recovery of the channel bed to its pre-flood elevation had not occurred more than 1 year after the flood (20 years after the 1993 flood at Kansas City). Thus, the possibility exists that channel-bed scour caused by large floods may have a cumulative effect along the lower Missouri River. The persistence of the flood-related decreases in channel-bed elevation may be indicative of the constrained ability of the channel to recover given a limited sediment supply caused by one or more of the following factors: upstream storage of sediment in reservoirs, bank stabilization, commercial sand dredging, depletion of readily available sediment by the flood, and a lack of post-flood sediment contributions from tributaries.

Sensitivity of managed boreal forests in Finland to climate change, with implications for adaptive management.

PubMed

Kellomäki, Seppo; Peltola, Heli; Nuutinen, Tuula; Korhonen, Kari T; Strandman, Harri

2008-07-12

This study investigated the sensitivity of managed boreal forests to climate change, with consequent needs to adapt the management to climate change. Model simulations representing the Finnish territory between 60 and 70 degrees N showed that climate change may substantially change the dynamics of managed boreal forests in northern Europe. This is especially probable at the northern and southern edges of this forest zone. In the north, forest growth may increase, but the special features of northern forests may be diminished. In the south, climate change may create a suboptimal environment for Norway spruce. Dominance of Scots pine may increase on less fertile sites currently occupied by Norway spruce. Birches may compete with Scots pine even in these sites and the dominance of birches may increase. These changes may reduce the total forest growth locally but, over the whole of Finland, total forest growth may increase by 44%, with an increase of 82% in the potential cutting drain. The choice of appropriate species and reduced rotation length may sustain the productivity of forest land under climate change.

Projected response of an endangered marine turtle population to climate change

NASA Astrophysics Data System (ADS)

Saba, Vincent S.; Stock, Charles A.; Spotila, James R.; Paladino, Frank V.; Tomillo, Pilar Santidrián

2012-11-01

Assessing the potential impacts of climate change on individual species and populations is essential for the stewardship of ecosystems and biodiversity. Critically endangered leatherback turtles in the eastern Pacific Ocean are excellent candidates for such an assessment because their sensitivity to contemporary climate variability has been substantially studied. If incidental fisheries mortality is eliminated, this population still faces the challenge of recovery in a rapidly changing climate. Here we combined an Earth system model, climate model projections assessed by the Intergovernmental Panel on Climate Change and a population dynamics model to estimate a 7% per decade decline in the Costa Rica nesting population over the twenty-first century. Whereas changes in ocean conditions had a small effect on the population, the ~2.5°C warming of the nesting beach was the primary driver of the decline through reduced hatching success and hatchling emergence rate. Hatchling sex ratio did not substantially change. Adjusting nesting phenology or changing nesting sites may not entirely prevent the decline, but could offset the decline rate. However, if future observations show a long-term decline in hatching success and emergence rate, anthropogenic climate mitigation of nests (for example, shading, irrigation) may be able to preserve the nesting population.

Effects of switching to lower sulfur marine fuel oil on air quality in the San Francisco Bay area.

PubMed

Tao, Ling; Fairley, David; Kleeman, Michael J; Harley, Robert A

2013-09-17

Ocean-going vessels burning high-sulfur heavy fuel oil are an important source of air pollutants, such as sulfur dioxide and particulate matter. Beginning in July 2009, an emission control area was put into effect at ports and along the California coastline, requiring use of lower sulfur fuels in place of heavy fuel oil in main engines of ships. To assess impacts of the fuel changes on air quality at the Port of Oakland and in the surrounding San Francisco Bay area, we analyzed speciated fine particle concentration data from four urban sites and two more remote sites. Measured changes in concentrations of vanadium, a specific marker for heavy fuel oil combustion, are related to overall changes in aerosol emissions from ships. We found a substantial reduction in vanadium concentrations after the fuel change and a 28-72% decrease in SO2 concentrations, with the SO2 decrease varying depending on proximity to shipping lanes. We estimate that the changes in ship fuel reduced ambient PM2.5 mass concentrations at urban sites in the Bay area by about 3.1 ± 0.6% or 0.28 ± 0.05 μg/m(3). The largest contributing factor to lower PM mass concentrations was reductions in particulate sulfate. Absolute sulfate reductions were fairly consistent across sites, whereas trace metal reductions were largest at a monitoring site in West Oakland near the port.

An approach to quantify sources, seasonal change, and biogeochemical processes affecting metal loading in streams: Facilitating decisions for remediation of mine drainage

USGS Publications Warehouse

Kimball, B.A.; Runkel, R.L.; Walton-Day, K.

2010-01-01

Historical mining has left complex problems in catchments throughout the world. Land managers are faced with making cost-effective plans to remediate mine influences. Remediation plans are facilitated by spatial mass-loading profiles that indicate the locations of metal mass-loading, seasonal changes, and the extent of biogeochemical processes. Field-scale experiments during both low- and high-flow conditions and time-series data over diel cycles illustrate how this can be accomplished. A low-flow experiment provided spatially detailed loading profiles to indicate where loading occurred. For example, SO42 - was principally derived from sources upstream from the study reach, but three principal locations also were important for SO42 - loading within the reach. During high-flow conditions, Lagrangian sampling provided data to interpret seasonal changes and indicated locations where snowmelt runoff flushed metals to the stream. Comparison of metal concentrations between the low- and high-flow experiments indicated substantial increases in metal loading at high flow, but little change in metal concentrations, showing that toxicity at the most downstream sampling site was not substantially greater during snowmelt runoff. During high-flow conditions, a detailed temporal sampling at fixed sites indicated that Zn concentration more than doubled during the diel cycle. Monitoring programs must account for diel variation to provide meaningful results. Mass-loading studies during different flow conditions and detailed time-series over diel cycles provide useful scientific support for stream management decisions.

Structural basis for modulation of a G-protein-coupled receptor by allosteric drugs

NASA Astrophysics Data System (ADS)

Dror, Ron O.; Green, Hillary F.; Valant, Celine; Borhani, David W.; Valcourt, James R.; Pan, Albert C.; Arlow, Daniel H.; Canals, Meritxell; Lane, J. Robert; Rahmani, Raphaël; Baell, Jonathan B.; Sexton, Patrick M.; Christopoulos, Arthur; Shaw, David E.

2013-11-01

The design of G-protein-coupled receptor (GPCR) allosteric modulators, an active area of modern pharmaceutical research, has proved challenging because neither the binding modes nor the molecular mechanisms of such drugs are known. Here we determine binding sites, bound conformations and specific drug-receptor interactions for several allosteric modulators of the M2 muscarinic acetylcholine receptor (M2 receptor), a prototypical family A GPCR, using atomic-level simulations in which the modulators spontaneously associate with the receptor. Despite substantial structural diversity, all modulators form cation-π interactions with clusters of aromatic residues in the receptor extracellular vestibule, approximately 15Å from the classical, `orthosteric' ligand-binding site. We validate the observed modulator binding modes through radioligand binding experiments on receptor mutants designed, on the basis of our simulations, either to increase or to decrease modulator affinity. Simulations also revealed mechanisms that contribute to positive and negative allosteric modulation of classical ligand binding, including coupled conformational changes of the two binding sites and electrostatic interactions between ligands in these sites. These observations enabled the design of chemical modifications that substantially alter a modulator's allosteric effects. Our findings thus provide a structural basis for the rational design of allosteric modulators targeting muscarinic and possibly other GPCRs.

Spatial and temporal source apportionment of PM2.5 in Georgia, 2002 to 2013

NASA Astrophysics Data System (ADS)

Zhai, Xinxin; Mulholland, James A.; Russell, Armistead G.; Holmes, Heather A.

2017-07-01

The Chemical Mass Balance (CMB) receptor model was applied to estimate PM2.5 source impacts over Georgia from 2002 to 2013 using ambient PM2.5 species concentration data from 13 sites. Measurements of 19 PM2.5 species were used as inputs along with measurement-based source profiles to estimate the impacts of nine sources, including both primary components (from heavy duty diesel vehicle, light duty gasoline vehicle, biomass burning, coal combustion, and suspended dust sources) and secondary pollutants (ammonium sulfate, ammonium bisulfate, ammonium nitrate, and secondary organic carbon). From 2002 to 2013, PM2.5 total mass decreased from 13.8 μg/m3 to 9.2 μg/m3 averaged across all sites, a 33% decrease. Largest decreases were observed for secondary sulfate and nitrate species (58% and 44%, respectively). The amount of neutralization by ammonium did not change substantially over the time period in spite of substantial decreases in sulfate and nitrate concentrations. Total mobile source impacts decreased more at urban sites (39%) than rural sites (23%), whereas biomass burning decreased more at rural sites (34%) than urban sites (27%). The estimated central-site source impacts are found to spatially represent large areas for secondary pollutants, smaller areas for biomass burning and dust, and very local areas for mobile sources and coal combustion. Trends from the National Emissions Inventory were compared with the annual trends of mobile source impacts, coal combustion impacts, and sulfate concentrations, resulting in statistically significant positive trends with Pearson R2 of 0.80, 0.64, and 0.79, respectively. Results presented here suggest that PM2.5 reductions in Georgia and the Southeast have been achieved by control of both stationary and mobile sources, and that PM2.5 is comprised of increasing fractions of biomass burning emissions and suspended dust. The temporal trends of source impacts at each site adds information about source changes beyond the every-three-year emission inventories for evaluation of emission-based model results.

Impacts of a Rural Subdivision on Groundwater Quality: Results of Long-Term Monitoring.

PubMed

Rayne, Todd W; Bradbury, Kenneth R; Krause, Jacob J

2018-03-30

A rural subdivision in south central Wisconsin was instrumented with monitoring wells and lysimeters before, during, and after its construction to examine the impacts of the unsewered subdivision on groundwater quality and quantity. Prior to construction, the 78-acre (32 ha) site was farmland. Sixteen homes were constructed beginning in 2003. Initial monitoring from 2002 to 2005 showed that groundwater beneath the site had been impacted by previous agricultural use, with nitrate-N values as high as 30 mg/L and some detections of the herbicide atrazine. Our 12-year study shows that the transition from agricultural to residential land use has changed groundwater quality in both negative and positive ways. Although groundwater elevations showed typical seasonal fluctuations each year, there were no measurable changes in groundwater levels or general flow directions during the 12-year study period. Chloride values increased in many wells, possibly as a result of road salting or water softener discharge. Nitrate concentrations varied spatially and temporally over the study period, with some initial concentrations substantially above the drinking water standard. In some wells, nitrate and atrazine levels have declined substantially since agriculture ceased. However, atrazine was still present at trace concentrations throughout the site in 2014. Wastewater tracers show there are small but detectable impacts from septic effluent on groundwater quality. Particle traces based on a groundwater flow model are consistent with the hypothesis that septic leachate has impacted groundwater quality. © 2018, National Ground Water Association.

Growing challenges for HIV programmes in Asia: clinic population trends, 2003-2013.

PubMed

De La Mata, Nicole L; Kumarasamy, Nagalingeswaran; Ly, Penh Sun; Ng, Oon Tek; Nguyen, Kinh Van; Merati, Tuti Parwati; Lee, Man Po; Do, Cuong Duy; Choi, Jun Yong; Ross, Jeremy L; Law, Matthew G

2017-10-01

The scale-up of antiretroviral therapy (ART) has led to a substantial change in the clinical population of HIV-positive patients receiving care. We describe the temporal trends in the demographic and clinical characteristics of HIV-positive patients initiating ART in 2003-13 within an Asian regional cohort. All HIV-positive adult patients that initiated ART between 2003 and 2013 were included. We summarized ART regimen use, age, CD4 cell count, HIV viral load, and HIV-related laboratory monitoring rates during follow-up by calendar year. A total of 16 962 patients were included in the analysis. Patients in active follow-up increased from 695 patients at four sites in 2003 to 11,137 patients at eight sites in 2013. The proportion of patients receiving their second or third ART regimen increased over time (5% in 2003 to 29% in 2013) along with patients aged ≥50 years (8% in 2003 to 18% in 2013). Concurrently, CD4 monitoring has remained stable in recent years, whereas HIV viral load monitoring, although varied among the sites, is increasing. There have been substantial changes in the clinical and demographic characteristics of HIV-positive patients receiving ART in Asia. HIV programmes will need to anticipate the clinical care needs for their aging populations, expanded viral load monitoring, and, the eventual increase in second and third ART regimens that will lead to higher costs and more complex drug procurement needs.

Probing the electrostatics of active site microenvironments along the catalytic cycle for Escherichia coli dihydrofolate reductase.

PubMed

Liu, C Tony; Layfield, Joshua P; Stewart, Robert J; French, Jarrod B; Hanoian, Philip; Asbury, John B; Hammes-Schiffer, Sharon; Benkovic, Stephen J

2014-07-23

Electrostatic interactions play an important role in enzyme catalysis by guiding ligand binding and facilitating chemical reactions. These electrostatic interactions are modulated by conformational changes occurring over the catalytic cycle. Herein, the changes in active site electrostatic microenvironments are examined for all enzyme complexes along the catalytic cycle of Escherichia coli dihydrofolate reductase (ecDHFR) by incorporation of thiocyanate probes at two site-specific locations in the active site. The electrostatics and degree of hydration of the microenvironments surrounding the probes are investigated with spectroscopic techniques and mixed quantum mechanical/molecular mechanical (QM/MM) calculations. Changes in the electrostatic microenvironments along the catalytic environment lead to different nitrile (CN) vibrational stretching frequencies and (13)C NMR chemical shifts. These environmental changes arise from protein conformational rearrangements during catalysis. The QM/MM calculations reproduce the experimentally measured vibrational frequency shifts of the thiocyanate probes across the catalyzed hydride transfer step, which spans the closed and occluded conformations of the enzyme. Analysis of the molecular dynamics trajectories provides insight into the conformational changes occurring between these two states and the resulting changes in classical electrostatics and specific hydrogen-bonding interactions. The electric fields along the CN axes of the probes are decomposed into contributions from specific residues, ligands, and solvent molecules that make up the microenvironments around the probes. Moreover, calculation of the electric field along the hydride donor-acceptor axis, along with decomposition of this field into specific contributions, indicates that the cofactor and substrate, as well as the enzyme, impose a substantial electric field that facilitates hydride transfer. Overall, experimental and theoretical data provide evidence for significant electrostatic changes in the active site microenvironments due to conformational motion occurring over the catalytic cycle of ecDHFR.

Probing the Electrostatics of Active Site Microenvironments along the Catalytic Cycle for Escherichia coli Dihydrofolate Reductase

PubMed Central

2015-01-01

Electrostatic interactions play an important role in enzyme catalysis by guiding ligand binding and facilitating chemical reactions. These electrostatic interactions are modulated by conformational changes occurring over the catalytic cycle. Herein, the changes in active site electrostatic microenvironments are examined for all enzyme complexes along the catalytic cycle of Escherichia coli dihydrofolate reductase (ecDHFR) by incorporation of thiocyanate probes at two site-specific locations in the active site. The electrostatics and degree of hydration of the microenvironments surrounding the probes are investigated with spectroscopic techniques and mixed quantum mechanical/molecular mechanical (QM/MM) calculations. Changes in the electrostatic microenvironments along the catalytic environment lead to different nitrile (CN) vibrational stretching frequencies and 13C NMR chemical shifts. These environmental changes arise from protein conformational rearrangements during catalysis. The QM/MM calculations reproduce the experimentally measured vibrational frequency shifts of the thiocyanate probes across the catalyzed hydride transfer step, which spans the closed and occluded conformations of the enzyme. Analysis of the molecular dynamics trajectories provides insight into the conformational changes occurring between these two states and the resulting changes in classical electrostatics and specific hydrogen-bonding interactions. The electric fields along the CN axes of the probes are decomposed into contributions from specific residues, ligands, and solvent molecules that make up the microenvironments around the probes. Moreover, calculation of the electric field along the hydride donor–acceptor axis, along with decomposition of this field into specific contributions, indicates that the cofactor and substrate, as well as the enzyme, impose a substantial electric field that facilitates hydride transfer. Overall, experimental and theoretical data provide evidence for significant electrostatic changes in the active site microenvironments due to conformational motion occurring over the catalytic cycle of ecDHFR. PMID:24977791

Seventy years of continuous encroachment substantially increases 'blue carbon' capacity as mangroves replace intertidal salt marshes.

PubMed

Kelleway, Jeffrey J; Saintilan, Neil; Macreadie, Peter I; Skilbeck, Charles G; Zawadzki, Atun; Ralph, Peter J

2016-03-01

Shifts in ecosystem structure have been observed over recent decades as woody plants encroach upon grasslands and wetlands globally. The migration of mangrove forests into salt marsh ecosystems is one such shift which could have important implications for global 'blue carbon' stocks. To date, attempts to quantify changes in ecosystem function are essentially constrained to climate-mediated pulses (30 years or less) of encroachment occurring at the thermal limits of mangroves. In this study, we track the continuous, lateral encroachment of mangroves into two south-eastern Australian salt marshes over a period of 70 years and quantify corresponding changes in biomass and belowground C stores. Substantial increases in biomass and belowground C stores have resulted as mangroves replaced salt marsh at both marine and estuarine sites. After 30 years, aboveground biomass was significantly higher than salt marsh, with biomass continuing to increase with mangrove age. Biomass increased at the mesohaline river site by 130 ± 18 Mg biomass km(-2)  yr(-1) (mean ± SE), a 2.5 times higher rate than the marine embayment site (52 ± 10 Mg biomass km(-2) yr(-1) ), suggesting local constraints on biomass production. At both sites, and across all vegetation categories, belowground C considerably outweighed aboveground biomass stocks, with belowground C stocks increasing at up to 230 ± 62 Mg C km(-2) yr(-1) (± SE) as mangrove forests developed. Over the past 70 years, we estimate mangrove encroachment may have already enhanced intertidal biomass by up to 283 097 Mg and belowground C stocks by over 500 000 Mg in the state of New South Wales alone. Under changing climatic conditions and rising sea levels, global blue carbon storage may be enhanced as mangrove encroachment becomes more widespread, thereby countering global warming. © 2015 John Wiley & Sons Ltd.

Modern landscape processes affecting archaeological sites along the Colorado River corridor downstream of Glen Canyon Dam, Glen Canyon National Recreation Area, Arizona

USGS Publications Warehouse

East, Amy E.; Sankey, Joel B.; Fairley, Helen C.; Caster, Joshua J.; Kasprak, Alan

2017-08-29

The landscape of the Colorado River through Glen Canyon National Recreation Area formed over many thousands of years and was modified substantially after the completion of Glen Canyon Dam in 1963. Changes to river flow, sediment supply, channel base level, lateral extent of sedimentary terraces, and vegetation in the post-dam era have modified the river-corridor landscape and have altered the effects of geologic processes that continue to shape the landscape and its cultural resources. The Glen Canyon reach of the Colorado River downstream of Glen Canyon Dam hosts many archaeological sites that are prone to erosion in this changing landscape. This study uses field evaluations from 2016 and aerial photographs from 1952, 1973, 1984, and 1996 to characterize changes in potential windblown sand supply and drainage configuration that have occurred over more than six decades at 54 archaeological sites in Glen Canyon and uppermost Marble Canyon. To assess landscape change at these sites, we use two complementary geomorphic classification systems. The first evaluates the potential for aeolian (windblown) transport of river-derived sand from the active river channel to higher elevation archaeological sites. The second identifies whether rills, gullies, or arroyos (that is, overland drainages that erode the ground surface) exist at the archaeological sites as well as the geomorphic surface, and therefore the relative base level, to which those flow paths drain. Results of these assessments are intended to aid in the management of irreplaceable archaeological resources by the National Park Service and stakeholders of the Glen Canyon Dam Adaptive Management Program.

Nucleotide-dependent bisANS binding to tubulin.

PubMed

Chakraborty, S; Sarkar, N; Bhattacharyya, B

1999-07-13

Non-covalent hydrophobic probes such as 5, 5'-bis(8-anilino-1-naphthalenesulfonate) (bisANS) have become increasingly popular to gain information about protein structure and conformation. However, there are limitations as bisANS binds non-specifically at multiple sites of many proteins. Successful use of this probe depends upon the development of binding conditions where only specific dye-protein interaction will occur. In this report, we have shown that the binding of bisANS to tubulin occurs instantaneously, specifically at one high affinity site when 1 mM guanosine 5'-triphosphate (GTP) is included in the reaction medium. Substantial portions of protein secondary structure and colchicine binding activity of tubulin are lost upon bisANS binding in absence of GTP. BisANS binding increases with time and occurs at multiple sites in the absence of GTP. Like GTP, other analogs, guanosine 5'-diphosphate, guanosine 5'-monophosphate and adenosine 5'-triphosphate, also displace bisANS from the lower affinity sites of tubulin. We believe that these multiple binding sites are generated due to the bisANS-induced structural changes on tubulin and the presence of GTP and other nucleotides protect those structural changes.

Post-Disturbance Stability of Fish Assemblages Measured at Coarse Taxonomic Resolution Masks Change at Finer Scales.

PubMed

Ceccarelli, Daniela M; Emslie, Michael J; Richards, Zoe T

2016-01-01

Quantifying changes to coral reef fish assemblages in the wake of cyclonic disturbances is challenging due to spatial variability of damage inherent in such events. Often, fish abundance appears stable at one spatial scale (e.g. reef-wide), but exhibits substantial change at finer scales (e.g. site-specific decline or increase). Taxonomic resolution also plays a role; overall stability at coarse taxonomic levels (e.g. family) may mask species-level turnover. Here we document changes to reef fish communities after severe Tropical Cyclone Ita crossed Lizard Island, Great Barrier Reef. Coral and reef fish surveys were conducted concurrently before and after the cyclone at four levels of exposure to the prevailing weather. Coral cover declined across all exposures except sheltered sites, with the largest decline at exposed sites. There was no significant overall reduction in the total density, biomass and species richness of reef fishes between 2011 and 2015, but individual fish taxa (families and species) changed in complex and unpredictable ways. For example, more families increased in density and biomass than decreased following Cyclone Ita, particularly at exposed sites whilst more fish families declined at lagoon sites even though coral cover did not decline. All sites lost biomass of several damselfish species, and at most sites there was an increase in macroinvertivores and grazers. Overall, these results suggest that the degree of change measured at coarse taxonomic levels masked high species-level turnover, although other potential explanations include that there was no impact of the storm, fish assemblages were impacted but underwent rapid recovery or that there is a time lag before the full impacts become apparent. This study confirms that in high-complexity, high diversity ecosystems such as coral reefs, species level analyses are essential to adequately capture the consequences of disturbance events.

Post-Disturbance Stability of Fish Assemblages Measured at Coarse Taxonomic Resolution Masks Change at Finer Scales

PubMed Central

Ceccarelli, Daniela M.

2016-01-01

Quantifying changes to coral reef fish assemblages in the wake of cyclonic disturbances is challenging due to spatial variability of damage inherent in such events. Often, fish abundance appears stable at one spatial scale (e.g. reef-wide), but exhibits substantial change at finer scales (e.g. site-specific decline or increase). Taxonomic resolution also plays a role; overall stability at coarse taxonomic levels (e.g. family) may mask species-level turnover. Here we document changes to reef fish communities after severe Tropical Cyclone Ita crossed Lizard Island, Great Barrier Reef. Coral and reef fish surveys were conducted concurrently before and after the cyclone at four levels of exposure to the prevailing weather. Coral cover declined across all exposures except sheltered sites, with the largest decline at exposed sites. There was no significant overall reduction in the total density, biomass and species richness of reef fishes between 2011 and 2015, but individual fish taxa (families and species) changed in complex and unpredictable ways. For example, more families increased in density and biomass than decreased following Cyclone Ita, particularly at exposed sites whilst more fish families declined at lagoon sites even though coral cover did not decline. All sites lost biomass of several damselfish species, and at most sites there was an increase in macroinvertivores and grazers. Overall, these results suggest that the degree of change measured at coarse taxonomic levels masked high species-level turnover, although other potential explanations include that there was no impact of the storm, fish assemblages were impacted but underwent rapid recovery or that there is a time lag before the full impacts become apparent. This study confirms that in high-complexity, high diversity ecosystems such as coral reefs, species level analyses are essential to adequately capture the consequences of disturbance events. PMID:27285160

Estimating climate resilience for conservation across geophysical settings.

PubMed

Anderson, Mark G; Clark, Melissa; Sheldon, Arlene Olivero

2014-08-01

Conservationists need methods to conserve biological diversity while allowing species and communities to rearrange in response to a changing climate. We developed and tested such a method for northeastern North America that we based on physical features associated with ecological diversity and site resilience to climate change. We comprehensively mapped 30 distinct geophysical settings based on geology and elevation. Within each geophysical setting, we identified sites that were both connected by natural cover and that had relatively more microclimates indicated by diverse topography and elevation gradients. We did this by scoring every 405 ha hexagon in the region for these two characteristics and selecting those that scored >SD 0.5 above the mean combined score for each setting. We hypothesized that these high-scoring sites had the greatest resilience to climate change, and we compared them with sites selected by The Nature Conservancy for their high-quality rare species populations and natural community occurrences. High-scoring sites captured significantly more of the biodiversity sites than expected by chance (p < 0.0001): 75% of the 414 target species, 49% of the 4592 target species locations, and 53% of the 2170 target community locations. Calcareous bedrock, coarse sand, and fine silt settings scored markedly lower for estimated resilience and had low levels of permanent land protection (average 7%). Because our method identifies-for every geophysical setting-sites that are the most likely to retain species and functions longer under a changing climate, it reveals natural strongholds for future conservation that would also capture substantial existing biodiversity and correct the bias in current secured lands. © 2014 The Authors. Conservation Biology published by Wiley Periodicals, Inc., on behalf of the Society for Conservation Biology.

Relations of changes in wastewater-treatment practices to changes in stream-water quality during 1978-88 in the Chicago area, Illinois, and implications for regional and national water-quality assessments

USGS Publications Warehouse

Terrio, P.J.

1994-01-01

A study in the upper Illinois River Basin defined relations between changes in wastewater-treatment practices and changes in stream-water quality on the basis of available information. These relations were examined for five large wastewater-treatment plants in the Chicago area, Illinois. At the three largest treatment plants, two major changes in wastewater-treatment practices were identified--the cessation of chlorination and the implementation of Chicago's Tunnel and Reservoir Plan (TARP). Other changes, such as improved aeration and expansion of the facilities, also were made at some of the treatment plants. At the Calumet Water Reclamation Plant, median densities of fecal coliform bacteria in the effluent increased from 3,100 to 1,200,000 colonies per 100 milliliters after the cessation of chlorination. Median densities at the nearest downstream monitoring site increased from 9,500 to 250,000 colonies per 100 milliliters. Similar changes in bacteria densities were indicated for other treatment plants and stream-monitoring sites, but increases in densities of fecal coliform bacteria were not indicated at distances greater than 7 miles downstream. Substantial changes in effluent and stream-water quality, primarily improvements, were identified after the implemen- of TARP and improvements in aeration. Decreases in some of the largest concentrations of ammonia were particularly notable and were likely results of the cape and treatment of combined sewer overflows by TARP. Improvements in water quality were commonly related to climatic season, with greater changes taking place during warm periods. Substantial decreases in concentrations were identified for many constituents, including oxygen demand, ammonia, bacteria, and cyanide. The water-quality data available for this study were considered to be more accurate and were more comprehensive than data from most other monitoring programs. The results of this study, however, identified some needed enhancements to increase the usefulness of the data for additional purposes and analyses.

Quantifying soil moisture impacts on light use efficiency across biomes.

PubMed

Stocker, Benjamin D; Zscheischler, Jakob; Keenan, Trevor F; Prentice, I Colin; Peñuelas, Josep; Seneviratne, Sonia I

2018-06-01

Terrestrial primary productivity and carbon cycle impacts of droughts are commonly quantified using vapour pressure deficit (VPD) data and remotely sensed greenness, without accounting for soil moisture. However, soil moisture limitation is known to strongly affect plant physiology. Here, we investigate light use efficiency, the ratio of gross primary productivity (GPP) to absorbed light. We derive its fractional reduction due to soil moisture (fLUE), separated from VPD and greenness changes, using artificial neural networks trained on eddy covariance data, multiple soil moisture datasets and remotely sensed greenness. This reveals substantial impacts of soil moisture alone that reduce GPP by up to 40% at sites located in sub-humid, semi-arid or arid regions. For sites in relatively moist climates, we find, paradoxically, a muted fLUE response to drying soil, but reduced fLUE under wet conditions. fLUE identifies substantial drought impacts that are not captured when relying solely on VPD and greenness changes and, when seasonally recurring, are missed by traditional, anomaly-based drought indices. Counter to common assumptions, fLUE reductions are largest in drought-deciduous vegetation, including grasslands. Our results highlight the necessity to account for soil moisture limitation in terrestrial primary productivity data products, especially for drought-related assessments. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

Central Chemoreceptors: Locations and Functions

PubMed Central

Nattie, Eugene; Li, Aihua

2016-01-01

Central chemoreception traditionally refers to a change in ventilation attributable to changes in CO2/H+ detected within the brain. Interest in central chemoreception has grown substantially since the previous Handbook of Physiology published in 1986. Initially, central chemoreception was localized to areas on the ventral medullary surface, a hypothesis complemented by the recent identification of neurons with specific phenotypes near one of these areas as putative chemoreceptor cells. However, there is substantial evidence that many sites participate in central chemoreception some located at a distance from the ventral medulla. Functionally, central chemoreception, via the sensing of brain interstitial fluid H+, serves to detect and integrate information on 1) alveolar ventilation (arterial PCO2), 2) brain blood flow and metabolism and 3) acid-base balance, and, in response, can affect breathing, airway resistance, blood pressure (sympathetic tone) and arousal. In addition, central chemoreception provides a tonic ‘drive’ (source of excitation) at the normal, baseline PCO2 level that maintains a degree of functional connectivity among brainstem respiratory neurons necessary to produce eupneic breathing. Central chemoreception responds to small variations in PCO2 to regulate normal gas exchange and to large changes in PCO2 to minimize acid-base changes. Central chemoreceptor sites vary in function with sex and with development. From an evolutionary perspective, central chemoreception grew out of the demands posed by air vs. water breathing, homeothermy, sleep, optimization of the work of breathing with the ‘ideal’ arterial PCO2, and the maintenance of the appropriate pH at 37°C for optimal protein structure and function. PMID:23728974

Changes in solvation during DNA binding and cleavage are critical to altered specificity of the EcoRI endonuclease

PubMed Central

Robinson, Clifford R.; Sligar, Stephen G.

1998-01-01

Restriction endonucleases such as EcoRI bind and cleave DNA with great specificity and represent a paradigm for protein–DNA interactions and molecular recognition. Using osmotic pressure to induce water release, we demonstrate the participation of bound waters in the sequence discrimination of substrate DNA by EcoRI. Changes in solvation can play a critical role in directing sequence-specific DNA binding by EcoRI and are also crucial in assisting site discrimination during catalysis. By measuring the volume change for complex formation, we show that at the cognate sequence (GAATTC) EcoRI binding releases about 70 fewer water molecules than binding at an alternate DNA sequence (TAATTC), which differs by a single base pair. EcoRI complexation with nonspecific DNA releases substantially less water than either of these specific complexes. In cognate substrates (GAATTC) kcat decreases as osmotic pressure is increased, indicating the binding of about 30 water molecules accompanies the cleavage reaction. For the alternate substrate (TAATTC), release of about 40 water molecules accompanies the reaction, indicated by a dramatic acceleration of the rate when osmotic pressure is raised. These large differences in solvation effects demonstrate that water molecules can be key players in the molecular recognition process during both association and catalytic phases of the EcoRI reaction, acting to change the specificity of the enzyme. For both the protein–DNA complex and the transition state, there may be substantial conformational differences between cognate and alternate sites, accompanied by significant alterations in hydration and solvent accessibility. PMID:9482860

Decadal trends in tropospheric ozone over East Asian Pacific rim during 1998-2007: Implications for emerging Asian emissions impacts and comparison to European and North American records (Invited)

NASA Astrophysics Data System (ADS)

Tanimoto, H.; Ohara, T.; Uno, I.

2010-12-01

We examine springtime ozone trends at nine remote locations in East Asian Pacific rim during the last decade (1998-2007). The observed decadal ozone trends are relatively small at surface sites but are substantially larger at a mountainous site. The level and increasing rate of ozone at the mountainous site are both higher than those observed at background sites in Europe and North America. We use a regional chemistry-transport model to explore the observed changes and how changes in Asian anthropogenic emissions have contributed to the observed increasing trends. The model with yearly-dependent regional emissions successfully reproduces the levels, variability, and interannual variations of ozone at all the surface sites. It predicts increasing trends at the mountainous site, suggesting that increasing Asian anthropogenic emissions account for about half the observed increase. However, the discrepancy between the observation and model results after 2003 (the time of largest emission increase) suggests significant underestimation of the actual growth of the Asian anthropogenic emissions and/or incompleteness in the modeling of pollution export from continental Asia. These findings imply that improving emissions inventory and transport scheme is needed to better understand rapidly evolving tropospheric ozone in East Asia and its potential climatic and environmental impacts.

Sensitivity and Reproducibility of a Family-level Macroinvertebrate Index used to Assess Acid Mine Impacts on Streams in the Western Allegheny Plateau

NASA Astrophysics Data System (ADS)

Johnson, K. S.

2005-05-01

We report on the performance of a family-level multimetric index, the MAIS (Macroinvertebrate Aggregate Index for Streams) for assessing acid mine impaired (AMD) sites in the Western Allegheny Plateau (Ohio). Two sampling protocols were compared, one utilizing three collection techniques (kick net, dip net and Surber samples), the other using two (kick and dip net). Including Surber samples tended to increase the MAIS score, changing the classification of four out of 52 sampling events (7.7%), but substantially increased processing time. MAIS scores were positively correlated with water pH (R = -0.77) and other indicators of AMD (acidity, sulfates, conductivity, total Al, total Mn). MAIS scores at some sites were consistent over 2-3 years of repeated sampling, others were more variable. Nineteen of the 26 sites that were sampled multiple times were categorized the same each year (73%), whereas 7 were classified differently in at least one year (27%). Since rainfall, flow regime and disturbance events varied over the three years, we cannot identify whether this variation reflects sampling error or actual changes in the assemblages at each site. Nevertheless, a benefit of repeated, annual evaluation is a statistically strong baseline condition against which future changes can be assessed.

PROCESS FOR COLORING DIAMONDS

DOEpatents

Dugdale, R.A.

1960-07-19

A process is given for coloring substantially colorless diamonds in the blue to blue-green range and comprises the steps of irradiating the colorless diamonds with electrons having an energy within the range 0.5 to 2 Mev to obtain an integrated electron flux of between 1 and 2 x 10/sup 18/ thc diamonds may be irradiated 1 hr when they take on a blue color with a slight green tint: After being heated at about 500 deg C for half an hour they become pure blue. Electrons within this energy range contam sufficient energy to displace the diamond atoms from their normal lattice sites into interstitial sites, thereby causing the color changes.

The costs of avoiding environmental impacts from shale-gas surface infrastructure.

PubMed

Milt, Austin W; Gagnolet, Tamara D; Armsworth, Paul R

2016-12-01

Growing energy demand has increased the need to manage conflicts between energy production and the environment. As an example, shale-gas extraction requires substantial surface infrastructure, which fragments habitats, erodes soils, degrades freshwater systems, and displaces rare species. Strategic planning of shale-gas infrastructure can reduce trade-offs between economic and environmental objectives, but the specific nature of these trade-offs is not known. We estimated the cost of avoiding impacts from land-use change on forests, wetlands, rare species, and streams from shale-energy development within leaseholds. We created software for optimally siting shale-gas surface infrastructure to minimize its environmental impacts at reasonable construction cost. We visually assessed sites before infrastructure optimization to test whether such inspection could be used to predict whether impacts could be avoided at the site. On average, up to 38% of aggregate environmental impacts of infrastructure could be avoided for 20% greater development costs by spatially optimizing infrastructure. However, we found trade-offs between environmental impacts and costs among sites. In visual inspections, we often distinguished between sites that could be developed to avoid impacts at relatively low cost (29%) and those that could not (20%). Reductions in a metric of aggregate environmental impact could be largely attributed to potential displacement of rare species, sedimentation, and forest fragmentation. Planners and regulators can estimate and use heterogeneous trade-offs among development sites to create industry-wide improvements in environmental performance and do so at reasonable costs by, for example, leveraging low-cost avoidance of impacts at some sites to offset others. This could require substantial effort, but the results and software we provide can facilitate the process. © 2016 Society for Conservation Biology.

A remote palm domain residue of RB69 DNA polymerase is critical for enzyme activity and influences the conformation of the active site.

PubMed

Jacewicz, Agata; Trzemecka, Anna; Guja, Kip E; Plochocka, Danuta; Yakubovskaya, Elena; Bebenek, Anna; Garcia-Diaz, Miguel

2013-01-01

Non-conserved amino acids that are far removed from the active site can sometimes have an unexpected effect on enzyme catalysis. We have investigated the effects of alanine replacement of residues distant from the active site of the replicative RB69 DNA polymerase, and identified a substitution in a weakly conserved palm residue (D714A), that renders the enzyme incapable of sustaining phage replication in vivo. D714, located several angstroms away from the active site, does not contact the DNA or the incoming dNTP, and our apoenzyme and ternary crystal structures of the Pol(D714A) mutant demonstrate that D714A does not affect the overall structure of the protein. The structures reveal a conformational change of several amino acid side chains, which cascade out from the site of the substitution towards the catalytic center, substantially perturbing the geometry of the active site. Consistent with these structural observations, the mutant has a significantly reduced k pol for correct incorporation. We propose that the observed structural changes underlie the severe polymerization defect and thus D714 is a remote, non-catalytic residue that is nevertheless critical for maintaining an optimal active site conformation. This represents a striking example of an action-at-a-distance interaction.

Arsenic geochemistry of alluvial sediments and pore waters affected by mine tailings along the Belle Fourche and Cheyenne River floodplains

USGS Publications Warehouse

Pfeifle, Bryce D.; Stamm, John F.; Stone, James J.

2018-01-01

Gold mining operations in the northern Black Hills of South Dakota resulted in the discharge of arsenopyrite-bearing mine tailings into Whitewood Creek from 1876 to 1977. Those tailings were transported further downstream along the Belle Fourche River, the Cheyenne River, and the Missouri River. An estimated 110 million metric tons of tailings remain stored in alluvial deposits of the Belle Fourche and Cheyenne Rivers. Pore-water dialysis samplers were deployed in the channel and backwaters of the Belle Fourche and Cheyenne Rivers to determine temporal and seasonal changes in the geochemistry of groundwater in alluvial sediments. Alluvial sediment adjacent to the dialysis samplers were cored for geochemical analysis. In comparison to US Environmental Protection Agency drinking water standards and reference concentrations of alluvial sediment not containing mine tailings, the Belle Fourche River sites had elevated concentrations of arsenic in pore water (2570 μg/L compared to 10 μg/L) and sediment (1010 ppm compared to < 34 ppm), respectively. Pore water arsenic concentration was affected by dissolution of iron oxyhydroxides under reducing conditions. Sequential extraction of iron and arsenic from sediment cores indicates that substantial quantities of soluble metals were present. Dissolution of arsenic sorbed to alluvial sediment particles appears to be affected by changing groundwater levels that cause shifts in redox conditions. Bioreductive processes did not appear to be a substantial transport pathway but could affect speciation of arsenic, especially at the Cheyenne River sampling sites where microbial activity was determined to be greater than at Belle Fourche sampling sites.

Africa Knowledge, Data Source, and Analytic Effort (KDAE) Exploration

DTIC Science & Technology

2012-08-20

The World Bank’s web site contains a substantial amount of data, organized by 18 broad topic areas like Agriculture and Rural Development, Education...wb.indicators) <- c(" Agriculture & Rural Development", "Aid Effectiveness", "Climate Change", "Economic Policy & External Debt", "Education", "Energy...Services,Equality))) IV. Model Building #### Function to iterate regression models IOT pick the best ones 75 library(MASS) data.best

Archaeological Testing of the Lewisville Lake Shoreline, Denton County, Texas

DTIC Science & Technology

1991-01-01

establishment of new communities supported by military aid and the coming of the railroads. The railroads created new markets for crops and other goods produced...concerning necessary additional work to mitigate the adverse effects of the proposed pool raise on these sites and to further substantiate the...the west is palso-environmental change with respect to local adaptive the Grand Praire. To the immediat east of the Eastern Cross strategies and

Mineralogical Indicators for Climate Change on Mars: Evidence from Landed Missions

NASA Technical Reports Server (NTRS)

Ming, D. W.; Morris, R. V.; Clark, B. C.

2015-01-01

Mineralogical and geochemical data returned by a flotilla of Mars orbiters and landers over the past 10 years has substantially enhanced our understanding on the evolution of the atmosphere and climate. Instruments onboard Mars Express and MRO discovered widespread deposits of phyllosilicates that formed during the Noachian followed by formation of sulfates into the Hesperian. The formation of extensive valley networks along with these layered deposits of phyllosilicates and sulfates during the late Noachian/ early Hesperian indicate a past martian climate that was capable of maintaining liquid water at the surface. The planet's climate changed substantially after these early 'episodes' of water and very little aqueous alteration has occurred over the past 3.5 Gyrs . A key to understanding Mars past climate is to identify, characterize, and age date secondary minerals that have formed by reaction with volatile compounds, e.g., H2O, CO2, SO2. Here, we summarize the detection of secondary minerals at the four landing sites visited over the past 10 years. We also provide potential pathways for their formation and implications for past climate change on Mars.

Visitor evaluations of management actions at a highly impacted Appalachian Trail camping area.

PubMed

Daniels, Melissa L; Marion, Jeffrey L

2006-12-01

Protected area management involves balancing environmental and social objectives. This is particularly difficult at high-use/high-impact recreation sites, because resource protection objectives may require substantial site management or visitor regulation. This study examined visitors' reactions to both of these types of actions at Annapolis Rocks, Maryland, a popular Appalachian Trail camping area. We surveyed visitors before and after implementation of camping policies that included shifting camping to designated newly constructed campsites and prohibiting campfires. Survey results reveal that visitors were more satisfied with all social and environmental indicators after the changes were enacted. An Importance-Performance analysis also determined that management actions improved conditions for factors of greatest concern to campers prior to the changes. Posttreatment visitors were least satisfied with factors related to reduced freedom and to some characteristics of the constructed campsites. Although there was evidence of visitor displacement, the camping changes met management goals by protecting the camping area's natural resources and improving social conditions.

Visitor evaluations of management actions at a highly impacted Appalachian Trail camping area

USGS Publications Warehouse

Daniels, M.L.; Marion, J.L.

2006-01-01

Protected area management involves balancing environmental and social objectives. This is particularly difficult at high-use/high-impact recreation sites, because resource protection objectives may require substantial site management or visitor regulation. This study examined visitors? reactions to both of these types of actions at Annapolis Rocks, Maryland, a popular Appalachian Trail camping area. We surveyed visitors before and after implementation of camping policies that included shifting camping to designated newly constructed campsites and prohibiting campfires. Survey results reveal that visitors were more satisfied with all social and environmental indicators after the changes were enacted. An Importance-Performance analysis also determined that management actions improved conditions for factors of greatest concern to campers prior to the changes. Posttreatment visitors were least satisfied with factors related to reduced freedom and to some characteristics of the constructed campsites. Although there was evidence of visitor displacement, the camping changes met management goals by protecting the camping area?s natural resources and improving social conditions.

Visitor Evaluations of Management Actions at a Highly Impacted Appalachian Trail Camping Area

NASA Astrophysics Data System (ADS)

Daniels, Melissa L.; Marion, Jeffrey L.

2006-12-01

Protected area management involves balancing environmental and social objectives. This is particularly difficult at high-use/high-impact recreation sites, because resource protection objectives may require substantial site management or visitor regulation. This study examined visitors’ reactions to both of these types of actions at Annapolis Rocks, Maryland, a popular Appalachian Trail camping area. We surveyed visitors before and after implementation of camping policies that included shifting camping to designated newly constructed campsites and prohibiting campfires. Survey results reveal that visitors were more satisfied with all social and environmental indicators after the changes were enacted. An Importance-Performance analysis also determined that management actions improved conditions for factors of greatest concern to campers prior to the changes. Posttreatment visitors were least satisfied with factors related to reduced freedom and to some characteristics of the constructed campsites. Although there was evidence of visitor displacement, the camping changes met management goals by protecting the camping area’s natural resources and improving social conditions.

Analysis of Recent European Surface Ozone Trends Considering Site Representativeness and Mete-orology

NASA Astrophysics Data System (ADS)

Henne, S.; Fleming, Z.; Brunner, D.; Klausen, J.; Buchmann, B.

2009-04-01

Recent trends of surface ozone (O3) within Europe vary substantially depending on the location and surroundings of a measurement site. The influence of long-range transport from North America and Asia, changes in stratosphere-troposphere exchange, increase in lower stratospheric O3 and changes in advection patterns are possible drivers for the observed O3 trends. O3 concentrations greatly depend on meteorology (temperature and radiation) and local to regional emissions of precursor gases and therefore on the representativeness of a site (e.g. background vs. urban site) and regional emission trends. We investigated the representativeness of 1264 "rural" and "suburban" background sites (as available through the European Environment Agency (EEA )Airbase database) by analysing population density, land cover and topography in the surrounding of the sites. A hierarchical clustering method was applied to derive an independent site categorization. The two area types as specified by EEA are split into 7 categories: elevated, lowered, remote, rural, rural/coastal, rural/polluted, suburban. Furthermore, we analysed the trend of surface O3 and Ox (O3+NO2) for the mentioned sites based on the above site categorization, local meteorology and precursor emission trends. Of the 1264 sites 161 possess sufficiently long and complete O3 data series suitable for robust trend estimation, while for 100 sites both O3 and NO2 data are available. We present a strategy for further data exclusion based on available data quality information and a break detection algorithm. First results of the trend analysis applying different statistical approaches are discussed.

Wetland Change Detection in Protected and Unprotected Indus Coastal and Inland Delta

NASA Astrophysics Data System (ADS)

Baig, M. H. Ali; Sultan, M.; Riaz Khan, M.; Zhang, L.; Kozlova, M.; Malik, N. Abbas; Wang, S.

2017-09-01

Worth of wetland sites lies in their ecological importance. They enhance ecosystem via provision of ecological services like improving water quality, groundwater infiltration, flood risk reduction and biodiversity regulation. Like other parts of the world Pakistan is also facing wetlands degradation. Ecological and economic significance of wetlands was recognized officially in 1971 as Pakistan became signatory of Ramsar wetland convention. Wetlands provide habitat to species of ecological and economic importance. Despite being recognized for international importance, Ramsar figures state that almost half of Pakistan's wetlands are at moderate or prominent level threat. Wetlands ecosystems are deteriorating at a rapid rate, if uncontrolled this trend may lead to substantial losses. Therefore, management of these resources demands regular monitoring. Present study is dedicated to assessing levels of change overtime in three distinct types of wetlands in Pakistan i.e. Indus delta a coastal wetland, Uchhali complex an inland wetland which are both protected sites while another site Nurri Lagoon which is not sheltered under any category of protected areas. Remotely sensed data has remarkable applications in change detection. Multitemporal Landsat images were used to map changes occurring from 2006 to 2016. Results reveal that wetland area has considerably decreased for all types. Both protected sites have experienced degradation though impact is comparatively lesser than unprotected Nurri lagoon. Significance of protection strategies cannot be denied, it is recommended that mere declaration of a site protected area is not sufficient. It is equally important to control non-point pollutants and ensuring the compliance of conservation strategy.

Glacial-Interglacial Variability of Nd isotopes in the South Atlantic and Southern Ocean

NASA Astrophysics Data System (ADS)

Knudson, K. P.; Goldstein, S. L.; Pena, L.; Seguí, M. J.; Kim, J.; Yehudai, M.; Fahey, T.

2017-12-01

Understanding the relationship between meridional overturning circulation and climate is key to understanding the processes and feedbacks underlying future climate changes. North Atlantic Deep Water (NADW) represents a major water mass that participates in global oceanic circulation and undergoes substantial reorganization with climate changes on millennial and orbital timescales. Nd isotopes are semi-quantitative water mass tracers that reflect the mixing of end-member water masses, and their values in the Southern Ocean offer the ability to characterize NADW variability over time. Here, we present paleo-circulation records of Nd isotopes measured on fish debris and Fe-Mn encrusted foraminifera from ODP Sites 1090 (42° 54.82'S, 3702 m), and 1094 (53° 10.81'S, 2807 m). Site 1090 is located in the Cape Basin, SE Atlantic, near the lower boundary between NADW and Circumpolar Deep Water (CDW), while 1094 is in the Circumpolar Current. They are ideal locations to monitor changes in the export of NADW to the Southern Ocean. These new results build on previous work (Pena and Goldstein, 2014) to document meridional overturning changes in the Southern Ocean.

Contractility of glycerinated Amoeba proteus and Chaos-chaos.

PubMed

Rinaldi, R; Opas, M; Hrebenda, B

1975-05-01

Immediate contact with large volumes of cold 50% (v/v) buffered glycerol preserved typical ameboid shape of Chaos chaos and Amoeba proteus with no visible distortions. These technics allowed determination of the contraction sites in these glycerinated models upon applications of ATP-Ca-Mg-solutions. The ectoplasmic tube was the main site of contraction. Preliminary EM investigations revealed thick and thin filaments, associated with the ectoplasmic tube near the plasma-lemma, which appeared to be the basis for the contractility of the ectoplasmic tube. There was no predominant contraction of the pseudopodial tips or the endoplasm in these models. The changes of volume were as much as 50%, and in some cases were not accompanied by any change in the length of the ameba; however, lengthwise contractions of the ectoplasmic tube in some amebae occurred to as much as 25%. The data substantiate a basic requirement of the ectoplasmic tube contraction theory of ameboid locomotion.

A socio-ecological adaptive approach to contaminated mega-site management: from 'control and correct' to 'coping with change'.

PubMed

Schirmer, Mario; Lyon, Ken; Armstrong, James E; Farrell, Katharine N

2012-01-01

Mega-sites have a notable impact on surrounding ecological systems. At such sites there are substantial risks associated with complex socio-ecological interactions that are hard to characterize, let alone model and predict. While the urge to control and clean-up mega-sites (control and correct) is understandable, rather than setting a goal of cleaning up such sites, we suggest a more realistic response strategy is to address these massive and persistent sources of contamination by acknowledging their position as new features of the socio-ecological landscapes within which they are located. As it seems nearly impossible to clean up such sites, we argue for consideration of a 'coping with change' rather than a 'control and correct' approach. This strategy recognizes that the current management option for a mega-site, in light of its physical complexities and due to changing societal preferences, geochemical transformations, hydrogeology knowledge and remedial technology options may not remain optimal in future, and therefore needs to be continuously adapted, as community, ecology, technology and understanding change over time. This approach creates an opportunity to consider the relationship between a mega-site and its human and ecological environments in a different and more dynamic way. Our proposed approach relies on iterative adaptive management to incorporate mega-site management into the overall socio-ecological systems of the site's context. This approach effectively embeds mega-site management planning in a triple bottom line and environmental sustainability structure, rather than simply using single measures of success, such as contaminant-based guidelines. Recognizing that there is probably no best solution for managing a mega-site, we present a starting point for engaging constructively with this seemingly intractable issue. Therefore, we aim to initiate discussion about a new approach to mega-site management, in which the complexity of the problems posed by mega-sites is reflected upon in its entirety. These complexities are associated with uncertainties and unknowns that have to be addressed, as they have an impact on the strategies being developed and applied. We contend that the best that can be hoped for in mega-site management is an acceptable solution for the current state of affairs, with good flexibility to modify strategies as new site conditions, remediation possibilities, community preferences and management objectives develop over time. Copyright © 2011 Elsevier B.V. All rights reserved.

Climate variability slows evolutionary responses of Colias butterflies to recent climate change.

PubMed

Kingsolver, Joel G; Buckley, Lauren B

2015-03-07

How does recent climate warming and climate variability alter fitness, phenotypic selection and evolution in natural populations? We combine biophysical, demographic and evolutionary models with recent climate data to address this question for the subalpine and alpine butterfly, Colias meadii, in the southern Rocky Mountains. We focus on predicting patterns of selection and evolution for a key thermoregulatory trait, melanin (solar absorptivity) on the posterior ventral hindwings, which affects patterns of body temperature, flight activity, adult and egg survival, and reproductive success in Colias. Both mean annual summer temperatures and thermal variability within summers have increased during the past 60 years at subalpine and alpine sites. At the subalpine site, predicted directional selection on wing absorptivity has shifted from generally positive (favouring increased wing melanin) to generally negative during the past 60 years, but there is substantial variation among years in the predicted magnitude and direction of selection and the optimal absorptivity. The predicted magnitude of directional selection at the alpine site declined during the past 60 years and varies substantially among years, but selection has generally been positive at this site. Predicted evolutionary responses to mean climate warming at the subalpine site since 1980 is small, because of the variability in selection and asymmetry of the fitness function. At both sites, the predicted effects of adaptive evolution on mean population fitness are much smaller than the fluctuations in mean fitness due to climate variability among years. Our analyses suggest that variation in climate within and among years may strongly limit evolutionary responses of ectotherms to mean climate warming in these habitats. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

SSA AND VA DISABILITY PROGRAMS: Re-Examination of Disability Criteria Needed to Help Ensure Program Integrity

DTIC Science & Technology

2002-08-01

Insurance DOT Dictionary of Occupational Titles O*NET Occupational Information Network SGA substantial gainful activity SSA Social Security Administration...Examining Disability Criteria broader social changes that focus on building and supporting the work capacities of people with disabilities. To this...available at no charge on the GAO Web site at http://www.gao.gov. If you have any Page 35 GAO-02-597 Re-Examining Disability Criteria questions about

Soil water dynamics of lateritic catchments as affected by forest clearing for pasture

NASA Astrophysics Data System (ADS)

Sharma, M. L.; Barron, R. J. W.; Williamson, D. R.

1987-10-01

Aspects of soil water dynamics as affected by land use changes were examined over a period of five years (1974-1979) in two groups of adjacent catchments located in 1200 mm yr -1 and 800 mm yr -1 rainfall zones near Collie, Western Australia. In the summer of 1976/1977, after three years of calibration, 100% of one high rainfall catchment, Wights, and 53% of one lower rainfall catchment, Lemon, was cleared of native eucalyptus forest and replaced with pasture. The soil water storage down to 6m was measured in-situ using a neutron probe in fifteen access tubes located at five stratified sites in each catchment. Considerable spatial variability in soil water storage was encountered within a site, between sites within a catchment, and between paired catchments; the dominant variability being between sites. Comparisons between the pre- and postclearing states within a catchment and between the cleared and uncleared control catchments were used to evaluate the effect of change in land use on soil water dynamics. Within two years of the change from forest to pasture, a significant increase in soil water storage had occurred in the profiles in both cleared catchments. Concurrently, there was a small decrease in the uncleared control catchments. The increases following clearing were greater in the higher than in the lower rainfall catchment, more pronounced in the first year than in the second year, and occurred mostly at depths greater than 2m. In Wights catchment, the increase in summer minimum soil water storage in the first and second years amounted to 220 and 58 mm respectively, whilst for Lemon catchment the increase for the first year was < 50 mm. This increased soil water storage was due to a substantially lower evapotranspiration from the shallow-rooted, seasonally active pasture which extracts water from the top 1 m or so, compared with the perennial native eucalyptus forest which extracts water from depths down to 6 m and beyond. Due to the relatively low water holding capacity of the surface lateritic soils, the drainage beyond 1 m is substantially increased under pasture, and this results in an increased recharge to the underlying aquifer.

Evaluating species-specific changes in hydrologic regimes: an iterative approach for salmonids in the Greater Yellowstone Area (USA)

USGS Publications Warehouse

Al-Chokhachy, Robert K.; Sepulveda, Adam; Ray, Andrew M.; Thoma, David P.; Tercek, Michael T.

2017-01-01

Despite the importance of hydrologic regimes to the phenology, demography, and abundance of fishes such as salmonids, there have been surprisingly few syntheses that holistically assess regional, species-specific trends in hydrologic regimes within a framework of climate change. Here, we consider hydrologic regimes within the Greater Yellowstone Area in the Rocky Mountains of western North America to evaluate changes in hydrologic metrics anticipated to affect salmonids, a group of fishes with high regional ecological and socioeconomic value. Our analyses assessed trends across different sites and time periods (1930–, 1950–, and 1970–2015) as means to evaluate spatial and temporal shifts. Consistent patterns emerged from our analyses indicating substantial shifts to (1) earlier peak discharge events; (2) reductions of summer minimum streamflows; (3) declines in the duration of river ice; and (4) decreases in total volume of water. We found accelerated trends in hydrologic change for the 1970–2015 period, with an average peak discharge 7.5 days earlier, 27.5% decline in summer minimum streamflows, and a 15.6% decline in the annual total volume of water (1 October–September 30) across sites. We did observe considerable variability in magnitude of change across sites, suggesting different levels of vulnerability to a changing climate. Our analyses provide an iterative means for assessing climate predictions and an important step in identifying the climate resilience of landscapes.

Climate mediates the effects of disturbance on ant assemblage structure

PubMed Central

Gibb, Heloise; Sanders, Nathan J.; Dunn, Robert R.; Watson, Simon; Photakis, Manoli; Abril, Silvia; Andersen, Alan N.; Angulo, Elena; Armbrecht, Inge; Arnan, Xavier; Baccaro, Fabricio B.; Bishop, Tom R.; Boulay, Raphael; Castracani, Cristina; Del Toro, Israel; Delsinne, Thibaut; Diaz, Mireia; Donoso, David A.; Enríquez, Martha L.; Fayle, Tom M.; Feener, Donald H.; Fitzpatrick, Matthew C.; Gómez, Crisanto; Grasso, Donato A.; Groc, Sarah; Heterick, Brian; Hoffmann, Benjamin D.; Lach, Lori; Lattke, John; Leponce, Maurice; Lessard, Jean-Philippe; Longino, John; Lucky, Andrea; Majer, Jonathan; Menke, Sean B.; Mezger, Dirk; Mori, Alessandra; Munyai, Thinandavha C.; Paknia, Omid; Pearce-Duvet, Jessica; Pfeiffer, Martin; Philpott, Stacy M.; de Souza, Jorge L. P.; Tista, Melanie; Vasconcelos, Heraldo L.; Vonshak, Merav; Parr, Catherine L.

2015-01-01

Many studies have focused on the impacts of climate change on biological assemblages, yet little is known about how climate interacts with other major anthropogenic influences on biodiversity, such as habitat disturbance. Using a unique global database of 1128 local ant assemblages, we examined whether climate mediates the effects of habitat disturbance on assemblage structure at a global scale. Species richness and evenness were associated positively with temperature, and negatively with disturbance. However, the interaction among temperature, precipitation and disturbance shaped species richness and evenness. The effect was manifested through a failure of species richness to increase substantially with temperature in transformed habitats at low precipitation. At low precipitation levels, evenness increased with temperature in undisturbed sites, peaked at medium temperatures in disturbed sites and remained low in transformed sites. In warmer climates with lower rainfall, the effects of increasing disturbance on species richness and evenness were akin to decreases in temperature of up to 9°C. Anthropogenic disturbance and ongoing climate change may interact in complicated ways to shape the structure of assemblages, with hot, arid environments likely to be at greatest risk. PMID:25994675

AutoDock-GIST: Incorporating Thermodynamics of Active-Site Water into Scoring Function for Accurate Protein-Ligand Docking.

PubMed

Uehara, Shota; Tanaka, Shigenori

2016-11-23

Water plays a significant role in the binding process between protein and ligand. However, the thermodynamics of water molecules are often underestimated, or even ignored, in protein-ligand docking. Usually, the free energies of active-site water molecules are substantially different from those of waters in the bulk region. The binding of a ligand to a protein causes a displacement of these waters from an active site to bulk, and this displacement process substantially contributes to the free energy change of protein-ligand binding. The free energy of active-site water molecules can be calculated by grid inhomogeneous solvation theory (GIST), using molecular dynamics (MD) and the trajectory of a target protein and water molecules. Here, we show a case study of the combination of GIST and a docking program and discuss the effectiveness of the displacing gain of unfavorable water in protein-ligand docking. We combined the GIST-based desolvation function with the scoring function of AutoDock4, which is called AutoDock-GIST. The proposed scoring function was assessed employing 51 ligands of coagulation factor Xa (FXa), and results showed that both scoring accuracy and docking success rate were improved. We also evaluated virtual screening performance of AutoDock-GIST using FXa ligands in the directory of useful decoys-enhanced (DUD-E), thus finding that the displacing gain of unfavorable water is effective for a successful docking campaign.

State prescription drug price Web sites: how useful to consumers?

PubMed

Tu, Ha T; Corey, Catherine G

2008-02-01

To aid consumers in comparing prescription drug costs, many states have launched Web sites to publish drug prices offered by local retail pharmacies. The current push to make retail pharmacy prices accessible to consumers is part of a much broader movement to increase price transparency throughout the health-care sector. Efforts to encourage price-based shopping for hospital and physician services have encountered widespread concerns, both on grounds that prices for complex services are difficult to measure and compare accurately and that quality varies substantially across providers. Experts agree, however, that prescription drugs are much easier to shop for than other, more complex health services. However, extensive gaps in available price information--the result of relying on Medicaid data--seriously hamper the effectiveness of state drug price-comparison Web sites, according to a new study by the Center for Studying Health System Change (HSC). An alternative approach--requiring pharmacies to submit price lists to the states--would improve the usefulness of price information, but pharmacies typically oppose such a mandate. Another limitation of most state Web sites is that price information is restricted to local pharmacies, when online pharmacies, both U.S. and foreign, often sell prescription drugs at substantially lower prices. To further enhance consumer shopping tools, states might consider expanding the types of information provided, including online pharmacy comparison tools, lists of deeply discounted generic drugs offered by discount retailers, and lists of local pharmacies offering price matches.

Suspended sediment projections in Apalachicola Bay in response to altered river flow and sediment loads under climate change and sea level rise

NASA Astrophysics Data System (ADS)

Huang, Wenrui; Hagen, Scott C.; Wang, Dingbao; Hovenga, Paige A.; Teng, Fei; Weishampel, John F.

2016-10-01

Suspended sediments, or total suspended solids (TSS), are an important factor for oyster habitat. While high concentrations of suspended sediments can cause a reduction of oyster density, some level of suspended sediment is required to supply oysters with necessary nutrients. In this study, characteristics of TSS variations in response to sea level rise (SLR) at two oyster reefs in Apalachicola Bay are investigated by coupled estuarine hydrodynamic and sediment transport modeling. A storm event in 1993 and a year-long period in 2010 under recent sea level conditions are selected as the baseline conditions. Scenarios of river flow and sediment loads under SLR and climate change are obtained by downscaled global climate modeling. Compared to the baseline conditions, simulations of TSS indicate that predicted SLR yields a substantial decrease in TSS near the two oyster reefs. However, TSS levels differed at the two study locations. TSS changes by SLR revealed minimal impact on oyster habitat at the Dry Bar site (to the west of the mouth of the Apalachicola River) but are projected to have a significant impact at the Cat Point site (to the east of the Apalachicola River). At Cat Point, because SLR causes the increase of salt water intrusion from the Gulf through a large tidal inlet (East Pass), maximum sediment concentration is near zero for 0.2-m SLR and equal to zero for 0.5- and 1.2-m SLR. Therefore, SLR may result in a substantial loss of nutrients from suspended sediment in the oyster reef at Cat Point.

Ecosystem change and stability over multiple decades in the Swedish subarctic: complex processes and multiple drivers.

PubMed

Callaghan, Terry V; Jonasson, Christer; Thierfelder, Tomas; Yang, Zhenlin; Hedenås, Henrik; Johansson, Margareta; Molau, Ulf; Van Bogaert, Rik; Michelsen, Anders; Olofsson, Johan; Gwynn-Jones, Dylan; Bokhorst, Stef; Phoenix, Gareth; Bjerke, Jarle W; Tømmervik, Hans; Christensen, Torben R; Hanna, Edward; Koller, Eva K; Sloan, Victoria L

2013-08-19

The subarctic environment of northernmost Sweden has changed over the past century, particularly elements of climate and cryosphere. This paper presents a unique geo-referenced record of environmental and ecosystem observations from the area since 1913. Abiotic changes have been substantial. Vegetation changes include not only increases in growth and range extension but also counterintuitive decreases, and stability: all three possible responses. Changes in species composition within the major plant communities have ranged between almost no changes to almost a 50 per cent increase in the number of species. Changes in plant species abundance also vary with particularly large increases in trees and shrubs (up to 600%). There has been an increase in abundance of aspen and large changes in other plant communities responding to wetland area increases resulting from permafrost thaw. Populations of herbivores have responded to varying management practices and climate regimes, particularly changing snow conditions. While it is difficult to generalize and scale-up the site-specific changes in ecosystems, this very site-specificity, combined with projections of change, is of immediate relevance to local stakeholders who need to adapt to new opportunities and to respond to challenges. Furthermore, the relatively small area and its unique datasets are a microcosm of the complexity of Arctic landscapes in transition that remains to be documented.

Ecosystem change and stability over multiple decades in the Swedish subarctic: complex processes and multiple drivers

PubMed Central

Callaghan, Terry V; Jonasson, Christer; Thierfelder, Tomas; Yang, Zhenlin; Hedenås, Henrik; Johansson, Margareta; Molau, Ulf; Van Bogaert, Rik; Michelsen, Anders; Olofsson, Johan; Gwynn-Jones, Dylan; Bokhorst, Stef; Phoenix, Gareth; Bjerke, Jarle W.; Tømmervik, Hans; Christensen, Torben R.; Hanna, Edward; Koller, Eva K.; Sloan, Victoria L.

2013-01-01

The subarctic environment of northernmost Sweden has changed over the past century, particularly elements of climate and cryosphere. This paper presents a unique geo-referenced record of environmental and ecosystem observations from the area since 1913. Abiotic changes have been substantial. Vegetation changes include not only increases in growth and range extension but also counterintuitive decreases, and stability: all three possible responses. Changes in species composition within the major plant communities have ranged between almost no changes to almost a 50 per cent increase in the number of species. Changes in plant species abundance also vary with particularly large increases in trees and shrubs (up to 600%). There has been an increase in abundance of aspen and large changes in other plant communities responding to wetland area increases resulting from permafrost thaw. Populations of herbivores have responded to varying management practices and climate regimes, particularly changing snow conditions. While it is difficult to generalize and scale-up the site-specific changes in ecosystems, this very site-specificity, combined with projections of change, is of immediate relevance to local stakeholders who need to adapt to new opportunities and to respond to challenges. Furthermore, the relatively small area and its unique datasets are a microcosm of the complexity of Arctic landscapes in transition that remains to be documented. PMID:23836792

Visual Pigments, Ocular Filters and the Evolution of Snake Vision.

PubMed

Simões, Bruno F; Sampaio, Filipa L; Douglas, Ronald H; Kodandaramaiah, Ullasa; Casewell, Nicholas R; Harrison, Robert A; Hart, Nathan S; Partridge, Julian C; Hunt, David M; Gower, David J

2016-10-01

Much of what is known about the molecular evolution of vertebrate vision comes from studies of mammals, birds and fish. Reptiles (especially snakes) have barely been sampled in previous studies despite their exceptional diversity of retinal photoreceptor complements. Here, we analyze opsin gene sequences and ocular media transmission for up to 69 species to investigate snake visual evolution. Most snakes express three visual opsin genes (rh1, sws1, and lws). These opsin genes (especially rh1 and sws1) have undergone much evolutionary change, including modifications of amino acid residues at sites of known importance for spectral tuning, with several tuning site combinations unknown elsewhere among vertebrates. These changes are particularly common among dipsadine and colubrine "higher" snakes. All three opsin genes are inferred to be under purifying selection, though dN/dS varies with respect to some lineages, ecologies, and retinal anatomy. Positive selection was inferred at multiple sites in all three opsins, these being concentrated in transmembrane domains and thus likely to have a substantial effect on spectral tuning and other aspects of opsin function. Snake lenses vary substantially in their spectral transmission. Snakes active at night and some of those active by day have very transmissive lenses, whereas some primarily diurnal species cut out shorter wavelengths (including UVA). In terms of retinal anatomy, lens transmission, visual pigment spectral tuning and opsin gene evolution the visual system of snakes is exceptionally diverse compared with all other extant tetrapod orders. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Long-term tobacco plantation induces soil acidification and soil base cation loss.

PubMed

Zhang, Yuting; He, Xinhua; Liang, Hong; Zhao, Jian; Zhang, Yueqiang; Xu, Chen; Shi, Xiaojun

2016-03-01

Changes in soil exchangeable cations relative to soil acidification are less studied particularly under long-term cash crop plantation. This study investigated soil acidification in an Ali-Periudic Argosols after 10-year (2002-2012) long-term continuous tobacco plantation. Soils were respectively sampled at 1933 and 2143 sites in 2002 and 2012 (also 647 tobacco plants), from seven tobacco plantation counties in the Chongqing Municipal City, southwest China. After 10-year continuous tobacco plantation, a substantial acidification was evidenced by an average decrease of 0.20 soil pH unit with a substantial increase of soil sites toward the acidic status, especially those pH ranging from 4.5 to 5.5, whereas 1.93 kmol H(+) production ha(-1) year(-1) was mostly derived from nitrogen (N) fertilizer input and plant N uptake output. After 1 decade, an average decrease of 27.6 % total exchangeable base cations or of 0.20 pH unit occurred in all seven tobacco plantation counties. Meanwhile, for one unit pH decrease, 40.3 and 28.3 mmol base cations kg(-1) soil were consumed in 2002 and 2012, respectively. Furthermore, the aboveground tobacco biomass harvest removed 339.23 kg base cations ha(-1) year(-1) from soil, which was 7.57 times higher than the anions removal, leading to a 12.52 kmol H(+) production ha(-1) year(-1) as the main reason inducing soil acidification. Overall, our results showed that long-term tobacco plantation not only stimulated soil acidification but also decreased soil acid-buffering capacity, resulting in negative effects on sustainable soil uses. On the other hand, our results addressed the importance of a continuous monitoring of soil pH changes in tobacco plantation sites, which would enhance our understanding of soil fertility of health in this region.

Characterization of non-CG genomic hypomethylation associated with gamma-ray-induced suppression of CMT3 transcription in Arabidopsis thaliana.

PubMed

Kim, Ji Eun; Lee, Min Hee; Cho, Eun Ju; Kim, Ji Hong; Chung, Byung Yeoup; Kim, Jin-Hong

2013-12-01

Ionizing radiation causes various epigenetic changes, as well as a variety of DNA lesions such as strand breaks, cross-links, oxidative damages, etc., in genomes. However, radiation-induced epigenetic changes have rarely been substantiated in plant genomes. The current study investigates whether DNA methylation of Arabidopsis thaliana genome is altered by gamma rays. We found that genomic DNA methylation decreased in wild-type plants with increasing doses of gamma rays (5, 50 and 200 Gy). Irradiation with 200 Gy significantly increased the expression of transcriptionally inactive centromeric 180-bp (CEN) and transcriptionally silent information (TSI) repeats. This increase suggested that there was a substantial release of transcriptional gene silencing by gamma rays, probably by induction of DNA hypomethylation. High expression of the DNA demethylase ROS1 and low expression of the DNA methyltransferase CMT3 supported this hypothesis. Moreover, Southern blot analysis following digestion of genomic DNA with methylation-sensitive enzymes revealed that the DNA hypomethylation occured preferentially at CHG or CHH sites rather than CG sites, depending on the radiation dose. Unlike CEN and TSI repeats, the number of Ta3, AtSN1 and FWA repeats decreased in transcription but increased in non-CG methylation. In addition, the cmt3-11 mutant showed neither DNA hypomethylation nor transcriptional activation of silenced repeats upon gamma irradiation. Furthermore, profiles of genome-wide transcriptomes in response to gamma rays differed between the wild-type and cmt3-11 mutant. These results suggest that gamma irradiation induced DNA hypomethylation preferentially at non-CG sites of transcriptionally inactive repeats in a locus-specific manner, which depends on CMT3 activity.

Subperiosteal and intraosseous connective tissue grafts for pocket reduction: a 9- to 13-year retrospective case series report.

PubMed

Nelson, S W

2001-10-01

Recent histological evidence has documented that grafted palatal connective tissue is capable of forming a new attachment to previously exposed roots in the treatment of gingival recession. No clinical studies have tested the ability of connective tissue that has been implanted beneath the periosteum into periodontal osseous defects to reduce probing depth and increase clinical attachment levels. This study reports the long-term clinical effect of subperiosteal and intraosseous connective tissue grafts on deep periodontal pockets. Connective tissue (CT) grafts were placed in 32 periodontal pockets on 27 patients. Grafts were classified into 3 groups. Type I grafts had 50% or more vascular surface contact and were < or = 2.5 mm thick. Type II grafts had 50% or more contact but were > 2.5 mm thick, and Type III grafts had less than 50% vascular contact regardless of thickness. Twelve of 14 Type I sites, 9 of 15 Type II sites, and 3 of 3 Type III sites were analyzed 9 to 13 years following treatment. Clinical attachment level change differed significantly between the graft types on survivor teeth (P < 0.05): Type III had 2 mm loss (95% confidence interval [CI]: 0.4 to 3.6), while Type II and Type I grafts had a 2.7 mm gain (95% CI: 2.0 to 3.4) and 4.3 mm gain (95% CI: 3.3 to 5.2), respectively. Similar substantial differences were presented for changes in probing depth and recession. This long-term (9 to 13 years) retrospective case-series analysis suggests substantial improvements in periodontal clinical measures for Type I CT grafts in deep periodontal pockets. Randomized trials are required to evaluate this promising procedure.

Trends in major-ion constituents and properties for selected sampling sites in the Tongue and Powder River watersheds, Montana and Wyoming, based on data collected during water years 1980-2010

USGS Publications Warehouse

Sando, Steven K.; Vecchia, Aldo V.; Barnhart, Elliott P.; Sando, Thomas R.; Clark, Melanie L.; Lorenz, David L.

2014-01-01

The primary purpose of this report is to present information relating to flow-adjusted temporal trends in major-ion constituents and properties for 16 sampling sites in the Tongue and Powder River watersheds based on data collected during 1980–2010. In association with this primary purpose, the report presents background information on major-ion characteristics (including specific conductance, calcium, magnesium, potassium, sodium adsorption ratio, sodium, alkalinity, chloride, fluoride, dissolved sulfate, and dissolved solids) of the sampling sites and coal-bed methane (CBM) produced water (groundwater pumped from coal seams) in the site watersheds, trend analysis methods, streamflow conditions, and factors that affect trend results. The Tongue and Powder River watersheds overlie the Powder River structural basin (PRB) in northeastern Wyoming and southeastern Montana. Limited extraction of coal-bed methane (CBM) from the PRB began in the early 1990’s, and increased dramatically during the late 1990’s and early 2000’s. CBM-extraction activities produce discharges of water with high concentrations of dissolved solids (particularly sodium and bicarbonate ions) relative to most stream water in the Tongue and Powder River watersheds. Water-quality of CBM produced water is of concern because of potential effects of sodium on agricultural soils and potential effects of bicarbonate on aquatic biota. Two parametric trend-analysis methods were used in this study: the time-series model (TSM) and ordinary least squares regression (OLS) on time, streamflow, and season. The TSM was used to analyze trends for 11 of the 16 study sites. For five sites, data requirements of the TSM were not met and OLS was used to analyze trends. Two primary 10-year trend-analysis periods were selected. Trend-analysis period 1 (water years 1986–95; hereinafter referred to as period 1) was selected to represent variability in major-ion concentrations in the Tongue and Powder River watersheds before potential effects of CBM-extraction activities. Trend analysis period 2 (water years 2001–10; hereinafter referred to as period 2) was selected because it encompassed substantial CBM-extraction activities and therefore might indicate potential effects of CBM-extraction activities on water quality of receiving streams in the Tongue and Powder River watersheds. For sites that did not satisfy data requirements for the TSM, OLS was used to analyze trends for period 2 (if complete data were available) or a 6-year period (2005–10). Flow-rate characteristics of CBM-produced water were estimated to allow general comparisons with streamflow characteristics of the sampling sites. The information on flow-rate characteristics of CBM-produced water in relation to streamflow does not account for effects of disposal, treatment, or other remediation activities on the potential quantitative effects of CBM-produced water on receiving streams. In many places, CBM-produced water is discharged into impoundments or channels in upper reaches of tributary watersheds where water infiltrates and does not directly contribute to streamflow. For Tongue River at State line (site 4) mean annual pumping rate of CBM-produced water during water years 2001–10 (hereinafter referred to as mean CBM pumping rate) was 6 percent of the mean of annual median streamflows during water years 2001–10 (hereinafter referred to as 2001–10 median streamflow). For main-stem Tongue River sites 5, 7, and 10, mean CBM pumping rate was 8–12 percent of 2001–10 median streamflow. For main-stem Powder River sites (sites 12, 13, and 16), mean CBM pumping rates were 26, 28, and 34 percent of 2001–10 median streamflows, respectively. For main-stem Tongue River sites analyzed by using the TSM and downstream from substantial CBM-extraction activities [Tongue River at State line (site 4), Tongue River at Tongue River Dam (site 5), Tongue River at Birney Day School (site 7), and Tongue River at Miles City (site 10)], generally small significant or nonsignificant decreases in most constituents are indicated for period 1. For period 2 for these sites, the TSM trend results do not allow confident conclusions concerning detection of effects of CBM-extraction activities on stream water quality. Detection of significant trends in major-ion constituents and properties for period 2 generally was infrequent, and direction, magnitudes, and significance of fitted trends were not strongly consistent with relative differences in water quality between stream water and CBM-produced water. The TSM indicated significant or generally large magnitude increases in median values of sodium adsorption ratio (SAR), sodium, and alkalinity for period 2 for sites 5 and 7, which might indicate potential effects of CBM-extraction activities on stream water. However, other factors, including operations of Tongue River Reservoir, irrigation activities, contributions of saline groundwater, and operations of the Decker coal mine, confound confident determination of causes of detected significant trends for sites 5 and 7. For all mainstem Tongue River sites, trends for period 2 generally are within ranges of those for period 1 before substantial CBM-extraction activities. For main-stem Powder River sites analyzed by using the TSM [Powder River at Sussex (site 11), Powder River at Arvada (site 12), Powder River at Moorhead (site 13), and Powder River near Locate (site 16)], significant or generally large magnitude decreases in median values of SAR, sodium, estimated alkalinity, chloride, fluoride, specific conductance, and dissolved solids are indicated for period 1. Patterns in trend results for period 1 for main-stem Powder River sites are consistent with effects of Salt Creek oil-brine reinjection that started in 1990. Trend results for all main-stem Powder River sites downstream from substantial CBM-extraction activities (sites 12, 13, and 16) indicate evidence of potential effects of CBM-extraction activities on stream water quality, although evidence is stronger for sites 12 and 13 than for site 16. Evidence in support of potential CBM effects includes significant increases in median values of SAR, sodium, and estimated alkalinity for period 2 for sites 12, 13, and 16 that are consistent with relative differences between stream water and CBM-produced water. Significant increases in median values of these constituents for period 2 are not indicated for Powder River at Sussex (site 11) upstream from substantial CBM-extraction activities. In interpreting the trend results, it is notable that the fitted trends evaluate changes in median concentrations and also notable that changes in median concentrations that might be attributed to CBM-extraction activities probably are more strongly evident during low to median streamflow conditions than during mean to high streamflow conditions. This observation is relevant in assessing trend results in relation to specific water-quality concerns, including effects of water-quality changes on irrigators and effects on stream biota and ecology.

Triple-resonance multidimensional NMR study of calmodulin complexed with the binding domain of skeletal muscle myosin light-chain kinase: Indication of a conformational change in the central helix

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ikura, Mitsuhiko; Kay, L.E.; Bax, A.

Heteronuclear 3D and 4D NMR experiments have been used to obtain {sup 1}H, {sup 13}C, and {sup 15}N backbone chemical shift assignments in Ca{sup 2+}-loaded clamodulin complexed with a 26-residue synthetic peptide (M13) corresponding to the calmodulin-bionding domain (residues 577-602) of rabbit skeletal muscle muosin light-chain kinase. Comparison of the chemical shift values with those observed in peptide-free calmodulin shows that binding of M13 peptide induces substantial chemical shift changes that are not localized in one particular region of the protein. The largest changes are found in the first helix of the Ca{sup 2+}-binding site 1 (E11-E14), the N-terminal portionmore » of the central helix (M72-D78), and the second helix of the Ca{sup 2+}-binding site 4 (F141-M145). Analysis of backbone NOE connectivities indicates a change from {alpha}-helical to an extended conformation for residues 75-77 upon complexation with M13. Upon complexation with M13, a significant decrease in the amide exchange rate is observed for residues T110, L112, G113, and E114 at the end of the second helix of site 3.« less

Predicting the responsiveness of soil biodiversity to deforestation: a cross-biome study.

PubMed

Crowther, Thomas W; Maynard, Daniel S; Leff, Jonathan W; Oldfield, Emily E; McCulley, Rebecca L; Fierer, Noah; Bradford, Mark A

2014-09-01

The consequences of deforestation for aboveground biodiversity have been a scientific and political concern for decades. In contrast, despite being a dominant component of biodiversity that is essential to the functioning of ecosystems, the responses of belowground biodiversity to forest removal have received less attention. Single-site studies suggest that soil microbes can be highly responsive to forest removal, but responses are highly variable, with negligible effects in some regions. Using high throughput sequencing, we characterize the effects of deforestation on microbial communities across multiple biomes and explore what determines the vulnerability of microbial communities to this vegetative change. We reveal consistent directional trends in the microbial community response, yet the magnitude of this vegetation effect varied between sites, and was explained strongly by soil texture. In sandy sites, the difference in vegetation type caused shifts in a suite of edaphic characteristics, driving substantial differences in microbial community composition. In contrast, fine-textured soil buffered microbes against these effects and there were minimal differences between communities in forest and grassland soil. These microbial community changes were associated with distinct changes in the microbial catabolic profile, placing community changes in an ecosystem functioning context. The universal nature of these patterns allows us to predict where deforestation will have the strongest effects on soil biodiversity, and how these effects could be mitigated. © 2014 John Wiley & Sons Ltd.

Colonization and extinction in dynamic habitats: an occupancy approach for a Great Plains stream fish assemblage.

PubMed

Falke, Jeffrey A; Bailey, Larissa L; Fausch, Kurt D; Bestgen, Kevin R

2012-04-01

Despite the importance of habitat in determining species distribution and persistence, habitat dynamics are rarely modeled in studies of metapopulations. We used an integrated habitat-occupancy model to simultaneously quantify habitat change, site fidelity, and local colonization and extinction rates for larvae of a suite of Great Plains stream fishes in the Arikaree River, eastern Colorado, USA, across three years. Sites were located along a gradient of flow intermittency and groundwater connectivity. Hydrology varied across years: the first and third being relatively wet and the second dry. Despite hydrologic variation, our results indicated that site suitability was random from one year to the next. Occupancy probabilities were also independent of previous habitat and occupancy state for most species, indicating little site fidelity. Climate and groundwater connectivity were important drivers of local extinction and colonization, but the importance of groundwater differed between periods. Across species, site extinction probabilities were highest during the transition from wet to dry conditions (range: 0.52-0.98), and the effect of groundwater was apparent with higher extinction probabilities for sites not fed by groundwater. Colonization probabilities during this period were relatively low for both previously dry sites (range: 0.02-0.38) and previously wet sites (range: 0.02-0.43). In contrast, no sites dried or remained dry during the transition from dry to wet conditions, yielding lower but still substantial extinction probabilities (range: 0.16-0.63) and higher colonization probabilities (range: 0.06-0.86), with little difference among sites with and without groundwater. This approach of jointly modeling both habitat change and species occupancy will likely be useful to incorporate effects of dynamic habitat on metapopulation processes and to better inform appropriate conservation actions.

The Natively Disordered Loop of Bcl-2 Undergoes Phosphorylation-Dependent Conformational Change and Interacts with Pin1

PubMed Central

Kang, CongBao; Bharatham, Nagakumar; Chia, Joel; Mu, Yuguang; Baek, Kwanghee; Yoon, Ho Sup

2012-01-01

Bcl-2 plays a central role in the regulation of apoptosis. Structural studies of Bcl-2 revealed the presence of a flexible and natively disordered loop that bridges the Bcl-2 homology motifs, BH3 and BH4. This loop is phosphorylated on multiple sites in response to a variety of external stimuli, including the microtubule-targeting drugs, paclitaxel and colchicine. Currently, the underlying molecular mechanism of Bcl-2 phosphorylation and its biological significance remain elusive. In this study, we investigated the molecular characteristics of this anti-apoptotic protein. To this end, we generated synthetic peptides derived from the Bcl-2 loop, and multiple Bcl-2 loop truncation mutants that include the phosphorylation sites. Our results demonstrate that S87 in the flexible loop of Bcl-2 is the primary phosphorylation site for JNK and ERK2, suggesting some sequence or structural specificity for the phosphorylation by these kinases. Our NMR studies and molecular dynamics simulation studies support indicate that phosphorylation of S87 induces a conformational change in the peptide. Finally, we show that the phosphorylated peptides of the Bcl-2 loop can bind Pin1, further substantiating the phosphorylation-mediated conformation change of Bcl-2. PMID:23272207

Mutation Rate Variation is a Primary Determinant of the Distribution of Allele Frequencies in Humans

PubMed Central

Pritchard, Jonathan K.

2016-01-01

The site frequency spectrum (SFS) has long been used to study demographic history and natural selection. Here, we extend this summary by examining the SFS conditional on the alleles found at the same site in other species. We refer to this extension as the “phylogenetically-conditioned SFS” or cSFS. Using recent large-sample data from the Exome Aggregation Consortium (ExAC), combined with primate genome sequences, we find that human variants that occurred independently in closely related primate lineages are at higher frequencies in humans than variants with parallel substitutions in more distant primates. We show that this effect is largely due to sites with elevated mutation rates causing significant departures from the widely-used infinite sites mutation model. Our analysis also suggests substantial variation in mutation rates even among mutations involving the same nucleotide changes. In summary, we show that variable mutation rates are key determinants of the SFS in humans. PMID:27977673

Implications for local and global climate of alternative forest management strategies in Norway

NASA Astrophysics Data System (ADS)

Bright, Ryan M.; Antón-Fernández, Clara; Astrup, Rasmus; Cherubini, Francesco; Kvalevåg, Maria; Hammer Strømman, Anders

2014-05-01

We applied a mix of observation and empirical models to evaluate both local and global climate effects of three realistic alternative forest management scenarios in the boreal forests of Norway's largest logging region. The alternative management scenarios embraced strategies aimed at increasing harvest intensities and allowing harvested conifer sites to regenerate naturally with broadleaved species. Stand-level analysis was firstly executed to attribute differences in daily, seasonal, and annual mean surface temperatures to differences in surface intrinsic biophysical properties across coniferous, deciduous, and clear-cut sites. Relative to a coniferous site, we observed a slight local cooling of 0.13 °C at a deciduous site and 0.25 °C at a clear-cut site over a 6-year period which was mostly attributed to a higher albedo throughout the year. When monthly mean albedo trajectories over the entire managed forest landscape were taken into consideration, we found that strategies promoting natural regeneration of coniferous sites with native deciduous species led to substantial global direct climate cooling benefits relative to those maintaining current silviculture regimes - despite predicted long-term regional warming feedbacks and a reduced albedo in spring and autumn months. The magnitude and duration of the cooling benefit depended largely on whether management strategies simultaneously promoted an enhanced material supply over business-as-usual levels. While additional climate impact linked to changes in life-cycle emissions and to changes in the global supply and demand of timber products ought to be factored into any mitigation-oriented climate policy involving the forestry sector, our analysis demonstrates that - within the boundaries of the managed forest ecosystem - excluding important biogeophysical considerations like surface albedo change may lead to sub-optimal climate policy.

Microrefuges and the occurrence of thermal specialists: implications for wildlife persistence amidst changing temperatures

USGS Publications Warehouse

Hall, L. Embere; Chalfoun, Anna D.; Beever, Erik; Loosen, Anne E.

2016-01-01

BackgroundContemporary climate change is affecting nearly all biomes, causing shifts in animal distributions, phenology, and persistence. Favorable microclimates may buffer organisms against rapid changes in climate, thereby allowing time for populations to adapt. The degree to which microclimates facilitate the local persistence of climate-sensitive species, however, is largely an open question. We addressed the importance of microrefuges in mammalian thermal specialists, using the American pika (Ochotona princeps) as a model organism. Pikas are sensitive to ambient temperatures, and are active year-round in the alpine where conditions are highly variable. We tested four hypotheses about the relationship between microrefuges and pika occurrence: 1) Local-habitat Hypothesis (local-habitat conditions are paramount, regardless of microrefuge); 2) Surface-temperature Hypothesis (surrounding temperatures, unmoderated by microrefuge, best predict occurrence); 3) Interstitial-temperature Hypothesis (temperatures within microrefuges best predict occurrence), and 4) Microrefuge Hypothesis (the degree to which microrefuges moderate the surrounding temperature facilitates occurrence, regardless of other habitat characteristics). We examined pika occurrence at 146 sites across an elevational gradient. We quantified pika presence, physiographic habitat characteristics and forage availability at each site, and deployed paired temperature loggers at a subset of sites to measure surface and subterranean temperatures.ResultsWe found strong support for the Microrefuge Hypothesis. Pikas were more likely to occur at sites where the subsurface environment substantially moderated surface temperatures, especially during the warm season. Microrefugium was the strongest predictor of pika occurrence, independent of other critical habitat characteristics, such as forage availability.ConclusionsBy modulating surface temperatures, microrefuges may strongly influence where temperature-limited animals persist in rapidly warming environments. As climate change continues to manifest, efforts to understand the changing dynamics of animal-habitat relationships will be enhanced by considering the quality of microrefuges.

Biogeochemical effects of global change on U.S. National Parks

USGS Publications Warehouse

Herrmann, R.; Stottlemyer, R.; Zak, J.C.; Edmonds, R.L.; Van Miegroet, H.

2000-01-01

Federal parks and other public lands have unique mandates and rules regulating their use and conservation. Because of variation in their response to local, regional, and global-scale disturbance, development of mitigation strategies requires substantial research in the context of long-term inventory and monitoring. In 1982, the National Park Service began long-term, watershed-level studies in a series of national parks. The objective was to provide a more comprehensive database against which the effects of global change and other issues could be quantified. A subset of five sites in North Carolina, Texas, Washington, Michigan, and Alaska, is examined here. During the last 50 years, temperatures have declined at the southern sites and increased at the northern sites with the greatest increase in Alaska. Only the most southern site has shown an increase in precipitation amount. The net effect of these trends, especially for the most northern and southern sites, would likely be an increase in the growing season and especially the time soil processes could continue without moisture or temperature limitations. During the last 18 years, there were few trends in atmospheric ion inputs. The most evident was the decline in SO42- deposition. There were no significant relationships between ion input and stream water output. This finding suggests other factors as modification of precipitation or canopy throughfall by soil processes, hydrologic flow path, and snowmelt rates are major processes regulating stream water chemical outputs.

Abundance of introduced species at home predicts abundance away in herbaceous communities

USGS Publications Warehouse

Firn, Jennifer; Moore, Joslin L.; MacDougall, Andrew S.; Borer, Elizabeth T.; Seabloom, Eric W.; HilleRisLambers, Janneke; Harpole, W. Stanley; Cleland, Elsa E.; Brown, Cynthia S.; Knops, Johannes M.H.; Prober, Suzanne M.; Pyke, David A.; Farrell, Kelly A.; Bakker, John D.; O'Halloran, Lydia R.; Adler, Peter B.; Collins, Scott L.; D'Antonio, Carla M.; Crawley, Michael J.; Wolkovich, Elizabeth M.; La Pierre, Kimberly J.; Melbourne, Brett A.; Hautier, Yann; Morgan, John W.; Leakey, Andrew D.B.; Kay, Adam; McCulley, Rebecca; Davies, Kendi F.; Stevens, Carly J.; Chu, Cheng-Jin; Holl, Karen D.; Klein, Julia A.; Fay, Phillip A.; Hagenah, Nicole; Kirkman, Kevin P.; Buckley, Yvonne M.

2011-01-01

Many ecosystems worldwide are dominated by introduced plant species, leading to loss of biodiversity and ecosystem function. A common but rarely tested assumption is that these plants are more abundant in introduced vs. native communities, because ecological or evolutionary-based shifts in populations underlie invasion success. Here, data for 26 herbaceous species at 39 sites, within eight countries, revealed that species abundances were similar at native (home) and introduced (away) sites - grass species were generally abundant home and away, while forbs were low in abundance, but more abundant at home. Sites with six or more of these species had similar community abundance hierarchies, suggesting that suites of introduced species are assembling similarly on different continents. Overall, we found that substantial changes to populations are not necessarily a pre-condition for invasion success and that increases in species abundance are unusual. Instead, abundance at home predicts abundance away, a potentially useful additional criterion for biosecurity programmes.

An Evaluation of Vegetation Influences on Infiltration in Hawaiian Soils

NASA Astrophysics Data System (ADS)

Perkins, K. S.; Stock, J. D.; Nimmo, J. R.

2016-12-01

Changes in vegetation communities such as removing trees, introducing grazing ungulates, and replacing native plants with invasive species have substantially altered soil infiltration processes and rates and therefore runoff, erosion, and aquifer recharge. We hypothesize that broad vegetation communities can be characterized by distributions of saturated hydraulic conductivity (Kfs). We used 300 field measurements of hydraulic conductivity from six sites on five of the Hawaiian Islands to show this effect. We analyzed the data using three broad ecosystem categories: grasses, trees and shrubs, or bare soil. The soils of each site have co-evolved with past and present ecological community without significant mechanical disturbance by agriculture or other human activities. Geometric mean values Kfs are 203 mm/h for soils hosting trees and shrubs, 50 mm/h for grasses, and 13 mm/h for bare soil. Differences are statistically significant at the 95% confidence level. These examples show that it is feasible to make maps of Kfs based on field and ecosystem data. These ecosystem trends can be used to estimate ongoing changes to runoff and recharge from climate and land use change.

Effects of site disorder, off-stoichiometry and epitaxial strain on the optical properties of magnetoelectric gallium ferrite.

PubMed

Roy, Amritendu; Mukherjee, Somdutta; Sarkar, Surajit; Auluck, Sushil; Prasad, Rajendra; Gupta, Rajeev; Garg, Ashish

2012-10-31

We present a combined experimental-theoretical study demonstrating the role of site disorder, off-stoichiometry and strain on the optical properties of magnetoelectric gallium ferrite. Optical properties (bandgap, refractive indices and dielectric constants) were experimentally obtained by performing ellipsometric studies over the energy range 0.8-4.2 eV on pulsed laser deposited epitaxial thin films of stoichiometric gallium ferrite with b-axis orientation and the data were compared with theoretical results. Calculations on the ground state structure show that the optical activity in GaFeO(3) arises primarily from O 2p-Fe 3d transitions. Further, inclusion of site disorder and epitaxial strain in the ground state structure significantly improves the agreement between the theory and the room temperature experimental data substantiating the presence of site disorder in the experimentally derived strained GaFeO(3) films at room temperature. We attribute the modification of the ground state optical behavior upon inclusion of site disorder to the corresponding changes in the electronic band structure, especially in Fe 3d states leading to a lowered bandgap of the material.

Biogeochemical patterns of intermittent streams over space and time as surface flows decrease

NASA Astrophysics Data System (ADS)

MacNeille, R. B.; Lohse, K. A.; Godsey, S.; McCorkle, E. P.; Parsons, S.; Baxter, C.

2016-12-01

Climate change in the western United States is projected to lead to earlier snowmelt, increasing fire risk and potentially transitioning perennial streams to intermittent ones. Differences between perennial and intermittent streams, especially the temporal and spatial patterns of carbon and nutrient dynamics during periods of drying, are understudied. We examined spatial and temporal patterns in surface water biogeochemistry in southwest Idaho and hypothesized that as streams dry, carbon concentrations would increase due to evapoconcentration and/or increased in-stream production. Furthermore, we expected that biogeochemical patterns of streams would become increasingly spatially heterogeneous with drying. Finally, we expected that these patterns would vary in response to fire. To test these hypotheses, we collected water samples every 50 meters from two intermittent streams, one burned and one unburned, in April, May and June, 2016 to determine surface water biogeochemistry. Results showed average concentrations of dissolved inorganic carbon (DIC) and dissolved organic carbon (DOC) increased 3-fold from April to June in the burned site compared to the unburned site where concentrations remained relatively constant. Interestingly, average concentrations of total nitrogen (TN) dropped substantially for the burned site over these three months, but only decreased slightly for the unburned site over the same time period. We also assessed changes in spatial correlation between the burned and unburned site: carbon concentrations were less spatially correlated at the unburned site than at the burned site. Scatterplot matrices of DIC values indicated that at a lag distance of 300 m in April and June, the unburned site had r-values of 0.7416 and 0.5975, respectively, while the burned site had r-values of 0.9468 and 0.8783, respectively. These initial findings support our hypotheses that carbon concentrations and spatial heterogeneity increased over time.

Modulation of Protein Phosphorylation, N-Glycosylation and Lys-Acetylation in Grape (Vitis vinifera) Mesocarp and Exocarp Owing to Lobesia botrana Infection*

PubMed Central

Melo-Braga, Marcella N.; Verano-Braga, Thiago; León, Ileana R.; Antonacci, Donato; Nogueira, Fábio C. S.; Thelen, Jay J.; Larsen, Martin R.; Palmisano, Giuseppe

2012-01-01

Grapevine (Vitis vinifera) is an economically important fruit crop that is subject to many types of insect and pathogen attack. To better elucidate the plant response to Lobesia botrana pathogen infection, we initiated a global comparative proteomic study monitoring steady-state protein expression as well as changes in N-glycosylation, phosphorylation, and Lys-acetylation in control and infected mesocarp and exocarp from V. vinifera cv Italia. A multi-parallel, large-scale proteomic approach employing iTRAQ labeling prior to three peptide enrichment techniques followed by tandem mass spectrometry led to the identification of a total of 3059 proteins, 1135 phosphorylation sites, 323 N-linked glycosylation sites and 138 Lys-acetylation sites. Of these, we could identify changes in abundance of 899 proteins. The occupancy of 110 phosphorylation sites, 10 N-glycosylation sites and 20 Lys-acetylation sites differentially changed during L. botrana infection. Sequence consensus analysis for phosphorylation sites showed eight significant motifs, two of which containing up-regulated phosphopeptides (X-G-S-X and S-X-X-D) and two containing down-regulated phosphopeptides (R-X-X-S and S-D-X-E) in response to pathogen infection. Topographical distribution of phosphorylation sites within primary sequences reveal preferential phosphorylation at both the N- and C termini, and a clear preference for C-terminal phosphorylation in response to pathogen infection suggesting induction of region-specific kinase(s). Lys-acetylation analysis confirmed the consensus X-K-Y-X motif previously detected in mammals and revealed the importance of this modification in plant defense. The importance of N-linked protein glycosylation in plant response to biotic stimulus was evident by an up-regulated glycopeptide belonging to the disease resistance response protein 206. This study represents a substantial step toward the understanding of protein and PTMs-mediated plant-pathogen interaction shedding light on the mechanisms underlying the grape infection. PMID:22778145

Streamflow investigations on a reach of Hobble Creek near Springville, Utah

USGS Publications Warehouse

Gerner, Steven J.

2017-07-27

The Central Utah Water Conservancy District (CUWCD) is proposing to deliver supplemental flow to Hobble Creek from Strawberry Reservoir through the Mapleton-Springville Lateral pipeline. A substantial portion of the supplemental water is intended to benefit June Sucker recovery and other fish and wildlife along Hobble Creek. The objective of this study was to determine gains or losses of water in a section of Hobble Creek between the Island Dam and the Swenson Dam (the primary study reach) during different seasons and flow conditions.Paired measurements of flow in Hobble Creek were made during June to November 2016, at sites bracketing the primary study reach from site HC3 to HC6. These measurements showed increased streamflow in this reach that ranged from 6.1 cubic feet per second (ft3/s) to 9.3 ft3/s. During August and November, two sets of measurements were made at several locations along the study reach to document baseline conditions, and then an additional amount of water (a pulse of about 9–10 ft3/s) from Strawberry Reservoir through the Mapleton-Springville Lateral pipeline, was added to the reach. During the August 23 measurements, the average change at the upstream site (HC3) relative to the pulse was 9.3 ft3/s, and the average change at the downstream site (HC6) was about 8.4 ft3/s, leaving about 0.9 ft3/s of the additional water unaccounted for at site HC6. However, there was no significant difference between the net streamflow volume at sites HC3 and HC6 associated with the pulse that would indicate water was being lost. During the November 7–9 streamflow measurements, the average change in discharge at site HC3 relative to an increase in flow from the Mapleton-Springville Lateral pipeline (the pulse) was 9.6 ft3/s, and the average change at site HC6 was about 9.8 ft3/s. On the basis of these measurements it appears that the entire amount of the pulse added to the stream at site HC3 was accounted for at site HC6. Additionally, there was no significant difference between the net streamflow volume at sites HC3 and HC8 associated with the pulse that would indicate water was being lost.

The Constitution of the Human Embryo as Substantial Change

PubMed Central

Alvargonzález, David

2016-01-01

This paper analyzes the transformation from the human zygote to the implanted embryo under the prism of substantial change. After a brief introduction, it vindicates the Aristotelian ideas of substance and accident, and those of substantial and accidental change. It then claims that the transformation from the multicelled zygote to the implanted embryo amounts to a substantial change. Pushing further, it contends that this substantial change cannot be explained following patterns of genetic reductionism, emergence, and self-organization, and proposes Gustavo Bueno’s idea of anamorphosis as a means to encapsulate criticism against such positions. PMID:26850033

Geologic framework influences on the geomorphology of an anthropogenically modified barrier island: Assessment of dune/beach changes at Fire Island, New York

USGS Publications Warehouse

Lentz, E.E.; Hapke, C.J.

2011-01-01

Antecedent geology plays a crucial role in determining the inner-shelf, nearshore, and onshore geomorphology observed in coastal systems. However, the influence of the geologic framework on a system is difficult to extract when evaluating responses to changes due to storms and anthropogenic modifications, and few studies have quantified the potential for these influences in dune/beach environments. This study evaluates topographic change to the dune/beach system at Fire Island, New York over a ten year period (1998-2008) at two sites representing eastern and western reaches of the island where morphology has been shown to vary. The sites are situated along swaths of coast eroding differentially and where the inner shelf geologic framework differs substantially. Fewer large storms occurred in the first half of the study period, compared with the later part of the study period which includes several severe and prolonged extratropical storms. Additionally, a major beach replenishment project was conducted at one of the study sites. Topographic data from LiDAR and RTK GPS surveys are used to construct high-resolution 3D surfaces, which are used to determine volumetric change and to extract 2D alongshore features and profiles for analysis. The study sites help to further characterize morphologic differences between eastern and western reaches of the island. The western site displays higher sand volumes, lower dunes, and a lower gradient profile slope when compared with the eastern site. In addition to these fundamental morphologic differences, the two sites also differ significantly in their response to coastal storms and in the fact that their replenishment histories are different. The replenished areas show reduced vulnerability to storms through minimal volume loss and shoreline accretion that should be considered when evaluating the response of replenished areas to episodic events. We propose that site-specific differences evident throughout the study period can be linked to alongshore variations in the framework geology of the system. Anthropogenic modifications may have intensified differences already inherent in the system. ?? 2010 Elsevier B.V.

Incorporating climate change projections into riparian restoration planning and design

USGS Publications Warehouse

Perry, Laura G.; Reynolds, Lindsay V.; Beechie, Timothy J.; Collins, Mathias J.; Shafroth, Patrick B.

2015-01-01

Climate change and associated changes in streamflow may alter riparian habitats substantially in coming decades. Riparian restoration provides opportunities to respond proactively to projected climate change effects, increase riparian ecosystem resilience to climate change, and simultaneously address effects of both climate change and other human disturbances. However, climate change may alter which restoration methods are most effective and which restoration goals can be achieved. Incorporating climate change into riparian restoration planning and design is critical to long-term restoration of desired community composition and ecosystem services. In this review, we discuss and provide examples of how climate change might be incorporated into restoration planning at the key stages of assessing the project context, establishing restoration goals and design criteria, evaluating design alternatives, and monitoring restoration outcomes. Restoration planners have access to numerous tools to predict future climate, streamflow, and riparian ecology at restoration sites. Planners can use those predictions to assess which species or ecosystem services will be most vulnerable under future conditions, and which sites will be most suitable for restoration. To accommodate future climate and streamflow change, planners may need to adjust methods for planting, invasive species control, channel and floodplain reconstruction, and water management. Given the considerable uncertainty in future climate and streamflow projections, riparian ecological responses, and effects on restoration outcomes, planners will need to consider multiple potential future scenarios, implement a variety of restoration methods, design projects with flexibility to adjust to future conditions, and plan to respond adaptively to unexpected change.

A Bat's-Eye View of Holocene Climate Change in the Southwest: Resolving Ambiguities in Cave Isotopic Records

NASA Astrophysics Data System (ADS)

Cole, J. E.; Truebe, S. A.; Harrington, M. D.; Woodhead, J. D.; Overpeck, J. T.; Hlohowskyj, S.; Henderson, G. M.

2015-12-01

In dry environments, speleothems provide an outstanding archive of information on past climate change, particularly since lakes are typically absent or intermittent. Speleothem stable isotopes are widely used for climate reconstruction, but the isotope-climate relationship is complex in arid-region precipitation, and within-cave processes further complicate climate interpretations. Our isotope results from 3 southeastern Arizona caves, spanning the past 3.5-12 kyr, collectively indicate a weakening monsoon from 7kyr to present. These records exhibit substantial multidecadal-multicentury variability that is sometimes shared, and sometimes independent among caves. Strategies to overcome ambiguities in isotope records include long-term monitoring of cave dripwaters, multi-site comparisons, and multiproxy measurements. Monthly dripwater measurements from two caves spanning several years highlight substantial seasonal biases that create distinct differences in the climate sensitivity of individual cave records. These biases can lead to lack of correlation between records, but also creates opportunities for seasonally specific moisture reconstructions. New preliminary analyses suggest that elemental data can help to unravel the multivariate signal contained in speleothem oxygen isotope records.

Nation Building and Social Signaling in Southern Ontario: A.D. 1350-1650.

PubMed

Hart, John P; Shafie, Termeh; Birch, Jennifer; Dermarkar, Susan; Williamson, Ronald F

2016-01-01

Pottery is a mainstay of archaeological analysis worldwide. Often, high proportions of the pottery recovered from a given site are decorated in some manner. In northern Iroquoia, late pre-contact pottery and early contact decoration commonly occur on collars-thick bands of clay that encircle a pot and extend several centimeters down from the lip. These decorations constitute signals that conveyed information about a pot's user(s). In southern Ontario the period A.D. 1350 to 1650 witnessed substantial changes in socio-political and settlement systems that included population movement, coalescence of formerly separate communities into large villages and towns, waxing and waning of regional strife, the formation of nations, and finally the development of three confederacies that each occupied distinct, constricted areas. Social network analysis demonstrates that signaling practices changed to reflect these regional patterns. Networks become more consolidated through time ultimately resulting in a "small world" network with small degrees of separation between sites reflecting the integration of communities within and between the three confederacies.

Renewable Energy Production from Waste to Mitigate Climate Change and Counteract Soil Degradation - A Spatial Explicit Assessment for Japan

NASA Astrophysics Data System (ADS)

Kraxner, Florian; Yoshikawa, Kunio; Leduc, Sylvain; Fuss, Sabine; Aoki, Kentaro; Yamagata, Yoshiki

2014-05-01

Waste production from urban areas is growing faster than urbanization itself, while at the same time urban areas are increasingly contributing substantial emissions causing climate change. Estimates indicate for urban residents a per capita solid waste (MSW) production of 1.2 kg per day, subject to further increase to 1.5 kg beyond 2025. Waste water and sewage production is estimated at about 260 liters per capita and day, also at increasing rates. Based on these figures, waste - including e.g. MSW, sewage and animal manure - can generally be assumed as a renewable resource with varying organic components and quantity. This paper demonstrates how new and innovative technologies in the field of Waste-to-Green Products can help in various ways not only to reduce costs for waste treatment, reduce the pressure on largely overloaded dump sites, and reduce also the effect of toxic materials at the landfill site and by that i.e. protect the groundwater. Moreover, Waste-to-Green Products can contribute actively to mitigating climate change through fossil fuel substitution and carbon sequestration while at the same time counteracting negative land use effects from other types of renewable energy and feedstock production through substitution. At the same time, the co-production and recycling of fertilizing elements and biochar can substantially counteract soil degradation and improve the soil organic carbon content of different land use types. The overall objective of this paper is to assess the total climate change mitigation potential of MSW, sewage and animal manure for Japan. A techno-economic approach is used to inform the policy discussion on the suitability of this substantial and sustainable mitigation option. We examine the spatial explicit technical mitigation potential from e.g. energy substitution and carbon sequestration through biochar in rural and urban Japan. For this exercise, processed information on respective Japanese waste production, energy demand (population density) and transport infrastructure is used as input data to an engineering model (BeWhere) for optimizing scale and location of waste treatment plants with potential energy and fertilizer co-generation. Finally, this paper quantifies the economic dimension of mitigation through innovative waste treatment while considering the additional business-feasibility and potential benefits from waste treatment co-products such as energy generation, fertilizer and biochar production for counteracting soil degradation.

Climate mediates the effects of disturbance on ant assemblage structure.

PubMed

Gibb, Heloise; Sanders, Nathan J; Dunn, Robert R; Watson, Simon; Photakis, Manoli; Abril, Silvia; Andersen, Alan N; Angulo, Elena; Armbrecht, Inge; Arnan, Xavier; Baccaro, Fabricio B; Bishop, Tom R; Boulay, Raphael; Castracani, Cristina; Del Toro, Israel; Delsinne, Thibaut; Diaz, Mireia; Donoso, David A; Enríquez, Martha L; Fayle, Tom M; Feener, Donald H; Fitzpatrick, Matthew C; Gómez, Crisanto; Grasso, Donato A; Groc, Sarah; Heterick, Brian; Hoffmann, Benjamin D; Lach, Lori; Lattke, John; Leponce, Maurice; Lessard, Jean-Philippe; Longino, John; Lucky, Andrea; Majer, Jonathan; Menke, Sean B; Mezger, Dirk; Mori, Alessandra; Munyai, Thinandavha C; Paknia, Omid; Pearce-Duvet, Jessica; Pfeiffer, Martin; Philpott, Stacy M; de Souza, Jorge L P; Tista, Melanie; Vasconcelos, Heraldo L; Vonshak, Merav; Parr, Catherine L

2015-06-07

Many studies have focused on the impacts of climate change on biological assemblages, yet little is known about how climate interacts with other major anthropogenic influences on biodiversity, such as habitat disturbance. Using a unique global database of 1128 local ant assemblages, we examined whether climate mediates the effects of habitat disturbance on assemblage structure at a global scale. Species richness and evenness were associated positively with temperature, and negatively with disturbance. However, the interaction among temperature, precipitation and disturbance shaped species richness and evenness. The effect was manifested through a failure of species richness to increase substantially with temperature in transformed habitats at low precipitation. At low precipitation levels, evenness increased with temperature in undisturbed sites, peaked at medium temperatures in disturbed sites and remained low in transformed sites. In warmer climates with lower rainfall, the effects of increasing disturbance on species richness and evenness were akin to decreases in temperature of up to 9°C. Anthropogenic disturbance and ongoing climate change may interact in complicated ways to shape the structure of assemblages, with hot, arid environments likely to be at greatest risk. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

What is a meaningful change in physical performance? Findings from a clinical trial in older adults (the LIFE-P study).

PubMed

Kwon, S; Perera, S; Pahor, M; Katula, J A; King, A C; Groessl, E J; Studenski, S A

2009-06-01

Performance measures provide important information, but the meaning of change in these measures is not well known. The purpose of this research is to 1) examine the effect of treatment assignment on the relationship between self-report and performance; 2) to estimate the magnitude of meaningful change in 400-meter walk time (400MWT), 4-meter gait speed (4MGS), and Short Physical Performance Battery (SPPB) and 3) to evaluate the effect of direction of change on estimates of magnitude. This is a secondary analysis of data from the LIFE-P study, a single blinded randomized clinical trial. Using change over one year, we applied distribution-based and anchor-based methods for self-reported mobility to estimate minimally important and substantial change in 400MWT, 4MGS and SPPB. Four university-based clinical research sites. Sedentary adults aged 70-89 whose SPPB scores were less than 10 and who were able to complete a 400MW at baseline (n=424). A structured exercise program versus health education. 400MWT, 4MGS, SPPB. Relationships between self-report and performance measures were consistent between treatment arms. Minimally significant change estimates were 400MWT: 20-30 seconds, 4MGS: 0.03-0.05m/s and SPPB: 0.3 - 0.8 points. Substantial changes were 400MWT: 50-60 seconds, 4MGS: 0.08m/s, SPPB: 0.4 - 1.5 points. Magnitudes of change for improvement and decline were not significantly different. The magnitude of clinically important change in physical performance measures is reasonably consistent using several analytic techniques and appears to be achievable in clinical trials of exercise. Due to limited power, the effect of direction of change on estimates of magnitude remains uncertain.

75 FR 11635 - Proposed Collection; Comment Request for Form 8806

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-11

... 8806, Information Return for Acquisition of Control or Substantial Change in Capital Structure. DATES... Control or Substantial Change in Capital Structure. OMB Number: 1545-1869. Form Number: 8806. Abstract... substantial change in capital structure under section 6043. Current Actions: There are no changes being made...

Monitoring of coastal coral reefs near Dahab (Gulf of Aqaba, Red Sea) indicates local eutrophication as potential cause for change in benthic communities.

PubMed

Naumann, Malik S; Bednarz, Vanessa N; Ferse, Sebastian C A; Niggl, Wolfgang; Wild, Christian

2015-02-01

Coral reef ecosystems fringing the coastline of Dahab (South Sinai, Egypt) have experienced increasing anthropogenic disturbance as an emergent international tourism destination. Previous reports covering tourism-related impacts on coastal environments, particularly mechanical damage and destructive fishing, have highlighted the vital necessity for regular ecosystem monitoring of coral reefs near Dahab. However, a continuous scientific monitoring programme of permanent survey sites has not been established to date. Thus, this study conducted in situ monitoring surveys to investigate spatio-temporal variability of benthic reef communities and selected reef-associated herbivores along with reef health indicator organisms by revisiting three of the locally most frequented dive sites during expeditions in March 2010, September 2011 and February 2013. In addition, inorganic nutrient concentrations in reef-surrounding waters were determined to evaluate bottom-up effects of key environmental parameters on benthic reef community shifts in relation to grazer-induced top-down control. Findings revealed that from 2010 to 2013, live hard coral cover declined significantly by 12 % at the current-sheltered site Three Pools (TP), while showing negative trends for the Blue Hole (BH) and Lighthouse (LH) sites. Hard coral cover decline was significantly and highly correlated to a substantial increase in turf algae cover (up to 57 % at TP) at all sites, replacing hard corals as dominant benthic space occupiers in 2013. These changes were correlated to ambient phosphate and ammonium concentrations that exhibited highest values (0.64 ± 0.07 μmol PO4 (3-) l(-1), 1.05 ± 0.07 μmol NH4 (+) l(-1)) at the degraded site TP. While macroalgae appeared to respond to both bottom-up and top-down factors, change in turf algae was consistent with expected indications for bottom-up control. Temporal variability measured in herbivorous reef fish stocks reflected seasonal impacts by local fisheries, with concomitant changes in macroalgal cover. These findings represent the first record of rapid, localised change in benthic reef communities near Dahab, consistent with indications for bottom-up controlled early-stage phase shifts, underlining the necessity for efficient regional wastewater management for coastal facilities.

The instrumental method of plutonium determination

NASA Astrophysics Data System (ADS)

Knyazev, B. B.; Kazachevskiy, I. V.; Solodukhin, V. P.; Lukashenko, S. N.; Knatova, M. K.; Kashirskiy, V. V.

2003-01-01

A method of direct instrumental determination of plutonium isotopes in soil samples is described. For the method a special program of spectra processing and activity calculation had to be prepared. The detection limit of 239+240Pu in absence of interfering radiation is about 200 Bq/kg (by 3.3σ criteria). Examples are given of the method application for the study of radionuclide soil composition in separate objects of Semipalatinsk Nuclear Test Site (SNTS). It is shown that for different objects under study the correlation degree between plutonium and americium activities may change rather substantially.

Observations of Pronounced Greenland Ice Sheet Firn Warming and Implications for Runoff Production

NASA Technical Reports Server (NTRS)

Polashenski, Chris; Courville, Zoe; Benson, Carl; Wagner, Anna; Chen, Justin; Wong, Gifford; Hawley, Robert; Hall, Dorothy

2014-01-01

Field measurements of shallow borehole temperatures in firn across the northern Greenland ice sheet are collected during May 2013. Sites first measured in 19521955 are revisited, showing long-term trends in firn temperature. Results indicate a pattern of substantial firn warming (up to +5.7C) at midlevel elevations (1400-2500 m) and little temperature change at high elevations (2500 m). We find that latent heat transport into the firn due to meltwater percolation drives the observed warming. Modeling shows that heat is stored at depth for several years, and energy delivered from consecutive melt events accumulates in the firn. The observed warming is likely not yet in equilibrium with recent melt production rates but captures the progression of sites in the percolation facies toward net runoff production.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eilert, Andre; Cavalca, Filippo; Roberts, F. Sloan

Copper electrocatalysts derived from an oxide have shown extraordinary electrochemical properties for the carbon dioxide reduction reaction (CO 2RR). Using in situ ambient pressure X-ray photoelectron spectroscopy and quasi in situ electron energy-loss spectroscopy in a transmission electron microscope, we show that there is a substantial amount of residual oxygen in nanostructured, oxide-derived copper electrocatalysts but no residual copper oxide. On the basis of these findings in combination with density functional theory simulations, we propose that residual subsurface oxygen changes the electronic structure of the catalyst and creates sites with higher carbon monoxide binding energy. If such sites are stablemore » under the strongly reducing conditions found in CO 2RR, these findings would explain the high efficiencies of oxide-derived copper in reducing carbon dioxide to multicarbon compounds such as ethylene.« less

Structural basis for the mechanism of inhibition of uridine phosphorylase from Salmonella typhimurium

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lashkov, A. A.; Zhukhlistova, N. E.; Sotnichenko, S. E.

2010-01-15

The three-dimensional structures of three complexes of Salmonella typhimurium uridine phosphorylase with the inhibitor 2,2'-anhydrouridine, the substrate PO{sub 4}, and with both the inhibitor 2,2'-anhydrouridine and the substrate PO{sub 4} (a binary complex) were studied in detail by X-ray diffraction. The structures of the complexes were refined at 2.38, 1.5, and 1.75 A resolution, respectively. Changes in the three-dimensional structure of the subunits in different crystal structures are considered depending on the presence or absence of the inhibitor molecule and (or) the phosphate ion in the active site of the enzyme. The presence of the phosphate ion in the phosphate-bindingmore » site was found to substantially change the orientations of the side chains of the amino-acid residues Arg30, Arg91, and Arg48 coordinated to this ion. A comparison showed that the highly flexible loop L9 is unstable. The atomic coordinates of the refined structures of the complexes and the corresponding structure factors were deposited in the Protein Data Bank (their PDB ID codes are 3DD0 and 3C74). The experimental data on the spatial reorganization of the active site caused by changes in its functional state from the unligated to the completely inhibited state suggest the structural basis for the mechanism of inhibition of Salmonella typhimurium uridine phosphorylase.« less

Woody plant encroachment effect on soil organic carbon dynamics: results from a latitudinal gradient in Italy

NASA Astrophysics Data System (ADS)

Pellis, Guido; Chiti, Tommaso; Moscatelli, Maria Cristina; Marinari, Sara; Papale, Dario

2016-04-01

Woody plant encroachment into pastures and grasslands represents a significant land cover change phenomenon, with a considerable impact on carbon dynamics at an ecosystem level. It was estimated that 7.64% of the Southern Europe land was subject to that process between 1950 to 2010. As a result of woody encroachment, changes in vegetation composition can produce substantial changes to the soil organic carbon (SOC) cycle. Despite the numerous papers published on land-use change, an evaluation of the IPCC terrestrial carbon pools changes occurring during woody encroachment on abandoned pastures and grasslands is still lacking, particularly for the Italian territory. Therefore, the aim of this study was to investigate the role of woody encroachment on carbon sequestration over abandoned pastures and grasslands in Alpine and Apennine ecosystems, with a particular focus on the SOC. We applied a chronosequence approach to seven selected sites located along a latitudinal gradient in Italy. Each chronosequence consisted of a pasture currently managed, three sites abandoned at different times in the past and, finally, a mature forest stand representing the last phase of the succession. The European Commission sampling protocols to certify SOC changes was adopted to estimate the variations following woody encroachment. Soil samples were collected at different depths in the topsoil (0-30 cm) and subsoil (30-70 cm), despite the original protocol formulation being limited to the topsoil only. In addition, aboveground living biomass (AGB), dead wood and litter were also measured following international protocols. Considering all C pools together, woody plant encroachment leads to a progressive C stock accumulation in all the chronosequences. The total C stock of mature forest stands ranges from 1.78±0.11 times (Eastern Alps) to 2.48±0.31 times (central Apennine) the initial value on pastures. Unsurprisingly, the C stocks of AGB, dead wood and litter all increase during the process of woody encroachment. Instead, the SOC dynamics are more complex, as previous studies suggest they are strongly affected by precipitation and temperature. Accordingly, we found that in the Apennine sites, characterised by a Mediterranean mountainous climate, the SOC increased more than 50% from pasture to forest stages. Conversely, the increment appears not or barely statistically significant in the two colder and more humid Eastern Alps sites. Our results also indicate a substantial amount of SOC is stored in the subsoil, despite many existing sampling protocols (including the original form of the one we adopted) typically restrict measurements only to the topsoil. Therefore, it is recommended to measure the SOC along the whole profile to avoid overlooking the significant amount of C that can accumulate in the subsoil during the process of woody encroachment. In conclusion, this study reveals a positive impact of woody encroachment in increasing the C at an ecosystem level and suggests that SOC measurements are extremely important when precise emission-removal estimates due to land use change are required.

The cost structure of routine infant immunization services: a systematic analysis of six countries

PubMed Central

Geng, Fangli; Suharlim, Christian; Brenzel, Logan; Resch, Stephen C; Menzies, Nicolas A

2017-01-01

Abstract Little information exists on the cost structure of routine infant immunization services in low- and middle-income settings. Using a unique dataset of routine infant immunization costs from six countries, we estimated how costs were distributed across budget categories and programmatic activities, and investigated how the cost structure of immunization sites varied by country and site characteristics. The EPIC study collected data on routine infant immunization costs from 319 sites in Benin, Ghana, Honduras, Moldova, Uganda, Zambia, using a standardized approach. For each country, we estimated the economic costs of infant immunization by administrative level, budget category, and programmatic activity from a programme perspective. We used regression models to describe how costs within each category were related to site operating characteristics and efficiency level. Site-level costs (incl. vaccines) represented 77–93% of national routine infant immunization costs. Labour and vaccine costs comprised 14–69% and 13–69% of site-level cost, respectively. The majority of site-level resources were devoted to service provision (facility-based or outreach), comprising 48–78% of site-level costs across the six countries. Based on the regression analyses, sites with the highest service volume had a greater proportion of costs devoted to vaccines, with vaccine costs per dose relatively unaffected by service volume but non-vaccine costs substantially lower with higher service volume. Across all countries, more efficient sites (compared with sites with similar characteristics) had a lower cost share devoted to labour. The cost structure of immunization services varied substantially between countries and across sites within each country, and was related to site characteristics. The substantial variation observed in this sample suggests differences in operating model for otherwise similar sites, and further understanding of these differences could reveal approaches to improve efficiency and performance of immunization sites. PMID:28575193

The cost structure of routine infant immunization services: a systematic analysis of six countries.

PubMed

Geng, Fangli; Suharlim, Christian; Brenzel, Logan; Resch, Stephen C; Menzies, Nicolas A

2017-10-01

Little information exists on the cost structure of routine infant immunization services in low- and middle-income settings. Using a unique dataset of routine infant immunization costs from six countries, we estimated how costs were distributed across budget categories and programmatic activities, and investigated how the cost structure of immunization sites varied by country and site characteristics. The EPIC study collected data on routine infant immunization costs from 319 sites in Benin, Ghana, Honduras, Moldova, Uganda, Zambia, using a standardized approach. For each country, we estimated the economic costs of infant immunization by administrative level, budget category, and programmatic activity from a programme perspective. We used regression models to describe how costs within each category were related to site operating characteristics and efficiency level. Site-level costs (incl. vaccines) represented 77-93% of national routine infant immunization costs. Labour and vaccine costs comprised 14-69% and 13-69% of site-level cost, respectively. The majority of site-level resources were devoted to service provision (facility-based or outreach), comprising 48-78% of site-level costs across the six countries. Based on the regression analyses, sites with the highest service volume had a greater proportion of costs devoted to vaccines, with vaccine costs per dose relatively unaffected by service volume but non-vaccine costs substantially lower with higher service volume. Across all countries, more efficient sites (compared with sites with similar characteristics) had a lower cost share devoted to labour. The cost structure of immunization services varied substantially between countries and across sites within each country, and was related to site characteristics. The substantial variation observed in this sample suggests differences in operating model for otherwise similar sites, and further understanding of these differences could reveal approaches to improve efficiency and performance of immunization sites. © The Author 2017. Published by Oxford University Press in association with The London School of Hygiene and Tropical Medicine.

Incubation under climate warming affects learning ability and survival in hatchling lizards.

PubMed

Dayananda, Buddhi; Webb, Jonathan K

2017-03-01

Despite compelling evidence for substantial individual differences in cognitive performance, it is unclear whether cognitive ability influences fitness of wild animals. In many animals, environmental stressors experienced in utero can produce substantial variation in the cognitive abilities of offspring. In reptiles, incubation temperatures experienced by embryos can influence hatchling brain function and learning ability. Under climate warming, the eggs of some lizard species may experience higher temperatures, which could affect the cognitive abilities of hatchlings. Whether such changes in cognitive abilities influence the survival of hatchlings is unknown. To determine whether incubation-induced changes in spatial learning ability affect hatchling survival, we incubated velvet gecko, Amalosia lesueurii , eggs using two fluctuating temperature regimes to mimic current (cold) versus future (hot) nest temperatures. We measured the spatial learning ability of hatchlings from each treatment, and released individually marked animals at two field sites in southeastern Australia. Hatchlings from hot-incubated eggs were slower learners than hatchlings from cold-incubated eggs. Survival analyses revealed that hatchlings with higher learning scores had higher survival than hatchlings with poor learning scores. Our results show that incubation temperature affects spatial learning ability in hatchling lizards, and that such changes can influence the survival of hatchlings in the wild. © 2017 The Author(s).

The vegetation history of the last glacial-interglacial cycle in eastern New South Wales, Australia

NASA Astrophysics Data System (ADS)

Williams, N. J.; Harle, K. J.; Gale, S. J.; Heijnis, H.

2006-10-01

We present a reconstruction of the vegetation history of the last glacial-interglacial cycle (ca. 75 k cal. yr BP-present) at Redhead Lagoon, an enclosed lake basin in coastal, eastern New South Wales, Australia. The sequence of vegetation change at the site is broadly comparable with the pattern of climatically induced changes observed in many other pollen records in southeast Australia. Open woodland-herbland and woodland-forest communities correspond with glacial and interglacial periods respectively, with an additional change towards a more open understorey vegetation assemblage over the last 40 000 yr. The driest conditions appear to have occurred during the height of the last glacial (some time between 30 and 20 k cal. yr BP). This is consistent with other records from southeast Australia, and provides support for a poleward shift in the subtropical anticyclone belt and, less certainly, for the thesis that the Southern Hemisphere westerlies intensified during this period. In marked contrast to most sites in southeast Australia, Casuarinaceae dominates the pollen record through the height of the last glacial period and into the Holocene. The postglacial climatic amelioration is accompanied by the general reappearance of tree pollen in the record, by the disappearance of several open and disturbed environment indicator taxa, by increases in organic sediment deposition and pollen taxon diversity, and by higher water balances. While climate appears to have been the major control on patterns of vegetation change at this site throughout most of the last glacial-interglacial cycle, changes in depositional environment and hydrology have also played a role. Significantly, substantial increases in the rate and magnitude of many indicators of environmental disturbance since European settlement suggest that humans are now the most important mechanism for environmental change. Copyright

14 CFR 204.6 - Certificated and commuter air carriers proposing a change in operations, ownership, or management...

Code of Federal Regulations, 2010 CFR

2010-01-01

... proposing a change in operations, ownership, or management which is not substantial. 204.6 Section 204.6... carriers proposing a change in operations, ownership, or management which is not substantial. Carriers proposing to make a change which would not substantially affect their operations, management, or ownership...

14 CFR 204.6 - Certificated and commuter air carriers proposing a change in operations, ownership, or management...

Code of Federal Regulations, 2011 CFR

2011-01-01

... proposing a change in operations, ownership, or management which is not substantial. 204.6 Section 204.6... carriers proposing a change in operations, ownership, or management which is not substantial. Carriers proposing to make a change which would not substantially affect their operations, management, or ownership...

Using lead isotopes and trace element records from two contrasting Lake Tanganyika sediment cores to assess watershed – Lake exchange

USGS Publications Warehouse

Odigie, Kingsley; Cohen, A.D.; Swarzenski, Peter W.; Flegal, R

2014-01-01

Lead isotopic and trace element records of two contrasting sediment cores were examined to reconstruct historic, industrial contaminant inputs to Lake Tanganyika, Africa. Observed fluxes of Co, Cu, Mn, Ni, Pb, and Zn in age-dated sediments collected from the lake varied both spatially and temporally over the past two to four centuries. The fluxes of trace elements were lower (up to 10-fold) at a mid-lake site (MC1) than at a nearshore site (LT-98-58), which is directly downstream from the Kahama and Nyasanga River watersheds and adjacent to the relatively pristine Gombe Stream National Park. Trace element fluxes at that nearshore site did not measurably change over the last two centuries (1815–1998), while the distal, mid-lake site exhibited substantial changes in the fluxes of trace elements – likely caused by changes in land use – over that period. For example, the flux of Pb increased by ∼300% from 1871 to 1991. That apparent accelerated weathering and detrital mobilization of lithogenic trace elements was further evidenced by (i) positive correlations (r = 0.77–0.99, p < 0.05) between the fluxes of Co, Cu, Mn, Ni, Pb, and Zn and those of iron (Fe) at both sites, (ii) positive correlations (r = 0.82–0.98, p < 0.01, n = 9) between the fluxes of elements (Al, Co, Cu, Fe, Mn, Ni, Pb, and Zn) and the mass accumulation rates at the offshore site, (iii) the low enrichment factors (EF < 5) of those trace elements, and (iv) the temporal consistencies of the isotopic composition of Pb in the sediment. These measurements indicate that accelerated weathering, rather than industrialization, accounts for most of the increases in trace element fluxes to Lake Tanganyika in spite of the development of mining and smelting operations within the lake’s watershed over the past century. The data also indicate that the mid-lake site is a much more sensitive and useful recorder of environmental changes than the nearshore site. Furthermore, the lead isotopic compositions of sediment at the sites differed spatially, indicating that the Pb (and other trace elements by association) originated from different natural sources at the two locations.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lewis, Hal A.; Zhao, Xun; Wang, Chi

Cystic fibrosis is caused by defects in the cystic fibrosis transmembrane conductance regulator (CFTR), commonly the deletion of residue Phe-508 (DeltaF508) in the first nucleotide-binding domain (NBD1), which results in a severe reduction in the population of functional channels at the epithelial cell surface. Previous studies employing incomplete NBD1 domains have attributed this to aberrant folding of DeltaF508 NBD1. We report structural and biophysical studies on complete human NBD1 domains, which fail to demonstrate significant changes of in vitro stability or folding kinetics in the presence or absence of the DeltaF508 mutation. Crystal structures show minimal changes in protein conformationmore » but substantial changes in local surface topography at the site of the mutation, which is located in the region of NBD1 believed to interact with the first membrane spanning domain of CFTR. These results raise the possibility that the primary effect of DeltaF508 is a disruption of proper interdomain interactions at this site in CFTR rather than interference with the folding of NBD1. Interestingly, increases in the stability of NBD1 constructs are observed upon introduction of second-site mutations that suppress the trafficking defect caused by the DeltaF508 mutation, suggesting that these suppressors might function indirectly by improving the folding efficiency of NBD1 in the context of the full-length protein. The human NBD1 structures also solidify the understanding of CFTR regulation by showing that its two protein segments that can be phosphorylated both adopt multiple conformations that modulate access to the ATPase active site and functional interdomain interfaces.« less

Readability of online patient education materials from the AAOS web site.

PubMed

Sabharwal, Sanjeev; Badarudeen, Sameer; Unes Kunju, Shebna

2008-05-01

One of the goals of the American Academy of Orthopaedic Surgeons (AAOS) is to disseminate patient education materials that suit the readability skills of the patient population. According to standard guidelines from healthcare organizations, the readability of patient education materials should be no higher than the sixth-grade level. We hypothesized the readability level of patient education materials available on the AAOS Web site would be higher than the recommended grade level, regardless when the material was available online. Readability scores of all articles from the AAOS Internet-based patient information Web site, "Your Orthopaedic Connection," were determined using the Flesch-Kincaid grade formula. The mean Flesch-Kincaid grade level of the 426 unique articles was 10.43. Only 10 (2%) of the articles had the recommended readability level of sixth grade or lower. The readability of the articles did not change with time. Our findings suggest the majority of the patient education materials available on the AAOS Web site had readability scores that may be too difficult for comprehension by a substantial portion of the patient population.

Readability of Online Patient Education Materials From the AAOS Web Site

PubMed Central

Badarudeen, Sameer; Unes Kunju, Shebna

2008-01-01

One of the goals of the American Academy of Orthopaedic Surgeons (AAOS) is to disseminate patient education materials that suit the readability skills of the patient population. According to standard guidelines from healthcare organizations, the readability of patient education materials should be no higher than the sixth-grade level. We hypothesized the readability level of patient education materials available on the AAOS Web site would be higher than the recommended grade level, regardless when the material was available online. Readability scores of all articles from the AAOS Internet-based patient information Web site, “Your Orthopaedic Connection,” were determined using the Flesch-Kincaid grade formula. The mean Flesch-Kincaid grade level of the 426 unique articles was 10.43. Only 10 (2%) of the articles had the recommended readability level of sixth grade or lower. The readability of the articles did not change with time. Our findings suggest the majority of the patient education materials available on the AAOS Web site had readability scores that may be too difficult for comprehension by a substantial portion of the patient population. PMID:18324452

Substantial changes in hemocyte parameters of Manila clam Ruditapes philippinarum two years after the Hebei Spirit oil spill off the west coast of Korea.

PubMed

Hong, Hyun-Ki; Donaghy, Ludovic; Kang, Chang-Keun; Kang, Hyun-Sil; Lee, Hee-Jung; Park, Heung-Sik; Choi, Kwang-Sik

2016-07-15

Two years after the Hebei Spirit oil spill occurred off the west coast of Korea, we determined sub-lethal effects of the spilled oil on hemocyte parameters of Ruditapes philippinarum in the damaged areas. Clams in the spilled sites displayed unusually high proportion of granulocytes, which may result in higher phagocytosis capacity and reactive oxygen species production. Hemocytes in clams from the polluted sites also displayed less DNA damage and mortality than in the control site, possibly due to a faster phagocytosis of the impaired cells. Glycogen, the major energetic reserve, was depleted in clams from the spilled sites, potentially due to energetic consumption for maintenance of a large pool of granulocytes, detoxification processes and oxidative stress. Modified hemocyte parameters in clams in the spilled area, may reflect sub-lethal physiological stresses caused by the residual oils in the sediment, in conjunction with environmental modifications such as food availability and pathogens pattern. Copyright © 2016 Elsevier Ltd. All rights reserved.

Organic matter losses in German Alps forest soils since the 1970s most likely caused by warming

NASA Astrophysics Data System (ADS)

Prietzel, Jörg; Zimmermann, Lothar; Schubert, Alfred; Christophel, Dominik

2016-07-01

Climate warming is expected to induce soil organic carbon losses in mountain soils that result, in turn, in reduced soil fertility, reduced water storage capacity and positive feedback on climate change. Here we combine two independent sets of measurements of soil organic carbon from forest soils in the German Alps--repeated measurements from 1976 to 2010 and from 1987 to 2011--to show that warming has caused a 14% decline in topsoil organic carbon stocks. The decreases in soil carbon occurred over a period of significant increases in six-month summer temperatures, with the most substantial decreases occurring at sites with large changes in mean annual temperature. Organic carbon stock decreases were largest--on average 32%--in forest soils with initial topsoil organic carbon stocks greater than 8 kg C m-2, which can be found predominantly on calcareous bedrock. However, organic carbon stocks of forest soils with lower initial carbon stocks, as well as soils under pasture or at elevations above 1,150 m, have not changed significantly. We conclude that warming is the most likely reason for the observed losses of soil organic carbon, but that site, land use and elevation may ameliorate the effects of climate change.

Conceptual Model of Uranium in the Vadose Zone for Acidic and Alkaline Wastes Discharged at the Hanford Site Central Plateau

DOE Office of Scientific and Technical Information (OSTI.GOV)

Truex, Michael J.; Szecsody, James E.; Qafoku, Nikolla

2014-09-01

Historically, uranium was disposed in waste solutions of varying waste chemistry at the Hanford Site Central Plateau. The character of how uranium was distributed in the vadose zone during disposal, how it has continued to migrate through the vadose zone, and the magnitude of potential impacts on groundwater are strongly influenced by geochemical reactions in the vadose zone. These geochemical reactions can be significantly influenced by the disposed-waste chemistry near the disposal location. This report provides conceptual models and supporting information to describe uranium fate and transport in the vadose zone for both acidic and alkaline wastes discharged at amore » substantial number of waste sites in the Hanford Site Central Plateau. The conceptual models include consideration of how co-disposed acidic or alkaline fluids influence uranium mobility in terms of induced dissolution/precipitation reactions and changes in uranium sorption with a focus on the conditions near the disposal site. This information, when combined with the extensive information describing uranium fate and transport at near background pH conditions, enables focused characterization to support effective fate and transport estimates for uranium in the subsurface.« less

Spatiotemporal Patterns of Hydrological Changes During the Younger Dryas Onset from Decadally-Resolved Lacustrine Biomarker Records: a W-E European Transect

NASA Astrophysics Data System (ADS)

Collins, J.; Aichner, B.; Engels, S.; Lane, C.; Maas, D.; Neugebauer, I.; Ott, F.; Slowinski, M. M.; Wulf, S.; Plessen, B.; Brauer, A.; Sachse, D.

2016-12-01

Future projections of European hydroclimate change remain uncertain, highlighting the need for an improved understanding of past abrupt European hydroclimate change, particularly in terms of identifying vulnerable regions. However, most existing continental paleohydrological records are not of sufficiently high resolution and/or sufficiently well dated for the assessment of leads and lags across the European continent and with the Greenland ice cores. To better understand mechanisms and feedbacks of hydrological changes during the last major abrupt climate change, the Younger Dryas (YD) cold period, we measured biomarker hydrogen isotopes (δD values) from terrestrial and aquatic sources on four high-resolution lacustrine sediment profiles. The sites span a 900km W-E transect from western Germany to eastern Poland and include: Meerfelder Maar, western Germany [MFM]; Hämelsee, northern-central Germany [HÄM]; Rehwiese, eastern Germany [RW]; Trzechowskie, central Poland [TRZ]. These sediments are annually laminated and contain common tephra layers, permitting a direct comparison of each site and allowing the identification of leads and lags in the response of the hydrological cycle to YD cooling on decadal timescales. We observed a decrease in biomarker δD values, likely reflecting cooling, that coincided with the onset of Greenland Stadial 1 in the NGRIP ice core at 12,846 years BP in the western European sites, with a progressive lag of several decades in the more easterly sites. Furthermore, we observed that the onset of aridification at all four sites occurred later but at roughly at the same time, coinciding with the biostratigraphically-defined onset of the YD at 12,679. A decrease in the magnitude of changes in biomarker δD values and aridification from W to E suggests a less strong aridification in eastern Europe. Our results suggest that hydrological changes at the onset of the YD were not uniform and were strongest and most abrupt in western Europe, where a substantial increase in aridity occurred over just 80 years, resulting in widespread environmental changes. These differences in magnitude and the distinct temporal succession could be related to the influence of the Fennoscandian ice sheets and/or the Siberian High on atmospheric circulation in eastern Europe.

Assessing Layered Materials in Gale Crater

NASA Technical Reports Server (NTRS)

Bridges, N. T.

2001-01-01

The recent analysis of high resolution Mars Orbiter Camera (MOC) images of layered outcrops in equatorial regions reinforces two important ideas, which will probably eventually become paradigms, about Mars: 1) It has had a long, complex geologic history marked by change, as manifested in the different layers observed, and 2) Standing bodies of water existed for substantial lengths of time, indicating clement conditions possibly conducive to life. Although observations of layering and evidence for lakes and oceans has been reported for years based on Mariner 9 and Viking data, the MOC data show that this layering is much more pervasive and complex than previously thought. These layered sites are ideal for studying the geologic, and possibly biologic, history of Mars. Here, a layered site within Gale Crater is advocated as a Mars Exploration Rover (MER) target. This is one of the few layered areas within closed depressions (e.g., other craters and Vallis Marineris) that meets the landing site constraints and is accessible to both MER A and B.

Does the choice of nucleotide substitution models matter topologically?

PubMed

Hoff, Michael; Orf, Stefan; Riehm, Benedikt; Darriba, Diego; Stamatakis, Alexandros

2016-03-24

In the context of a master level programming practical at the computer science department of the Karlsruhe Institute of Technology, we developed and make available an open-source code for testing all 203 possible nucleotide substitution models in the Maximum Likelihood (ML) setting under the common Akaike, corrected Akaike, and Bayesian information criteria. We address the question if model selection matters topologically, that is, if conducting ML inferences under the optimal, instead of a standard General Time Reversible model, yields different tree topologies. We also assess, to which degree models selected and trees inferred under the three standard criteria (AIC, AICc, BIC) differ. Finally, we assess if the definition of the sample size (#sites versus #sites × #taxa) yields different models and, as a consequence, different tree topologies. We find that, all three factors (by order of impact: nucleotide model selection, information criterion used, sample size definition) can yield topologically substantially different final tree topologies (topological difference exceeding 10 %) for approximately 5 % of the tree inferences conducted on the 39 empirical datasets used in our study. We find that, using the best-fit nucleotide substitution model may change the final ML tree topology compared to an inference under a default GTR model. The effect is less pronounced when comparing distinct information criteria. Nonetheless, in some cases we did obtain substantial topological differences.

A general mixture equation of state for double bonding carboxylic acids with ≥2 association sites

NASA Astrophysics Data System (ADS)

Marshall, Bennett D.

2018-05-01

In this paper, we obtain the first general multi-component solution to Wertheim's thermodynamic perturbation theory for the case that molecules can participate in cyclic double bonds. In contrast to previous authors, we do not restrict double bonding molecules to a 2-site association scheme. Each molecule in a multi-component mixture can have an arbitrary number of donor and acceptor association sites. The one restriction on the theory is that molecules can have at most one pair of double bonding sites. We also incorporate the effect of hydrogen bond cooperativity in cyclic double bonds. We then apply this new association theory to 2-site and 3-site models for carboxylic acids within the polar perturbed chain statistical associating fluid theory equation of state. We demonstrate the accuracy of the approach by comparison to both pure and multi-component phase equilibria data. It is demonstrated that the 3-site association model gives substantially a different hydrogen bonding structure than a 2-site approach. We also demonstrate that inclusion of hydrogen bond cooperativity has a substantial effect on a liquid phase hydrogen bonding structure.

Retrospective analysis of Bering Sea bottom trawl surveys: regime shift and ecosystem reorganization

NASA Astrophysics Data System (ADS)

Conners, M. E.; Hollowed, A. B.; Brown, E.

2002-10-01

This paper compiles data from bottom trawl surveys using variations on a 400-mesh eastern trawl gear into a 38-year time series (1963-2000), using a robust index of median catch per unit effort (CPUE) as an indicator of regional abundance. Time series are presented for three index sites in the southeastern Bering Sea: the inner shelf in Bristol Bay, the middle shelf north of Unimak Island, and the outer shelf near the Pribilof Islands. All three sites show strong evidence of a shift in benthic biomass and community structure in the early to mid-1980s. During this period, all three sites showed substantial increases in the abundances of walleye pollock, Pacific cod, rock sole, flathead sole, cartilaginous fishes (skates) and non-crab benthic invertebrates. Species composition, especially of flatfish, differs at the three sites, but the trend for groundfish abundance to increase was consistent at all three sites. The similarity in trends both across the region and across both commercial and unexploited groups suggests to us that a complete reorganization of benthic and demersal food webs may have taken place. The timing of change in trawl catch weight is consistent with effects of the strong regime shift observed in climate indices in 1976-1977. There is little evidence of similar biological responses to subsequent, less pronounced changes in climate. Our data are also consistent with recently documented shifts in ecosystem dynamics resulting from changes in ice cover and thermal structure in the eastern Bering Sea. Our analysis indicates that there was a much higher biomass of groundfish at all three sites during 1980-2000 than in 1960-1980. This result provides evidence against the hypothesis that the overall productivity of the eastern Bering Sea has decreased. The precipitous decline of the endangered Steller sea lion in this region from 1975-1985 was concurrent with an overall increase in abundance of groundfish prey.

Changing ecophysiological processes and carbon budget in East Asian ecosystems under near-future changes in climate: implications for long-term monitoring from a process-based model.

PubMed

Ito, Akihiko

2010-07-01

Using a process-based model, I assessed how ecophysiological processes would respond to near-future global changes predicted by coupled atmosphere-ocean climate models. An ecosystem model, Vegetation Integrative SImulator for Trace gases (VISIT), was applied to four sites in East Asia (different types of forest in Takayama, Tomakomai, and Fujiyoshida, Japan, and an Alpine grassland in Qinghai, China) where observational flux data are available for model calibration. The climate models predicted +1-3 degrees C warming and slight change in annual precipitation by 2050 as a result of an increase in atmospheric CO2. Gross primary production (GPP) was estimated to increase substantially at each site because of improved efficiency in the use of water and radiation. Although increased respiration partly offset the GPP increase, the simulation showed that these ecosystems would act as net carbon sinks independent of disturbance-induced uptake for recovery. However, the carbon budget response relied strongly on nitrogen availability, such that photosynthetic down-regulation resulting from leaf nitrogen dilution largely decreased GPP. In relation to long-term monitoring, these results indicate that the impacts of global warming may be more evident in gross fluxes (e.g., photosynthesis and respiration) than in the net CO2 budget, because changes in these fluxes offset each other.

Homologous ligands accommodated by discrete conformations of a buried cavity

PubMed Central

Merski, Matthew; Fischer, Marcus; Balius, Trent E.; Eidam, Oliv; Shoichet, Brian K.

2015-01-01

Conformational change in protein–ligand complexes is widely modeled, but the protein accommodation expected on binding a congeneric series of ligands has received less attention. Given their use in medicinal chemistry, there are surprisingly few substantial series of congeneric ligand complexes in the Protein Data Bank (PDB). Here we determine the structures of eight alkyl benzenes, in single-methylene increases from benzene to n-hexylbenzene, bound to an enclosed cavity in T4 lysozyme. The volume of the apo cavity suffices to accommodate benzene but, even with toluene, larger cavity conformations become observable in the electron density, and over the series two other major conformations are observed. These involve discrete changes in main-chain conformation, expanding the site; few continuous changes in the site are observed. In most structures, two discrete protein conformations are observed simultaneously, and energetic considerations suggest that these conformations are low in energy relative to the ground state. An analysis of 121 lysozyme cavity structures in the PDB finds that these three conformations dominate the previously determined structures, largely modeled in a single conformation. An investigation of the few congeneric series in the PDB suggests that discrete changes are common adaptations to a series of growing ligands. The discrete, but relatively few, conformational states observed here, and their energetic accessibility, may have implications for anticipating protein conformational change in ligand design. PMID:25847998

Homologous ligands accommodated by discrete conformations of a buried cavity.

PubMed

Merski, Matthew; Fischer, Marcus; Balius, Trent E; Eidam, Oliv; Shoichet, Brian K

2015-04-21

Conformational change in protein-ligand complexes is widely modeled, but the protein accommodation expected on binding a congeneric series of ligands has received less attention. Given their use in medicinal chemistry, there are surprisingly few substantial series of congeneric ligand complexes in the Protein Data Bank (PDB). Here we determine the structures of eight alkyl benzenes, in single-methylene increases from benzene to n-hexylbenzene, bound to an enclosed cavity in T4 lysozyme. The volume of the apo cavity suffices to accommodate benzene but, even with toluene, larger cavity conformations become observable in the electron density, and over the series two other major conformations are observed. These involve discrete changes in main-chain conformation, expanding the site; few continuous changes in the site are observed. In most structures, two discrete protein conformations are observed simultaneously, and energetic considerations suggest that these conformations are low in energy relative to the ground state. An analysis of 121 lysozyme cavity structures in the PDB finds that these three conformations dominate the previously determined structures, largely modeled in a single conformation. An investigation of the few congeneric series in the PDB suggests that discrete changes are common adaptations to a series of growing ligands. The discrete, but relatively few, conformational states observed here, and their energetic accessibility, may have implications for anticipating protein conformational change in ligand design.

Surface energy exchanges along a tundra-forest transition and feedbacks to climate

USGS Publications Warehouse

Beringer, J.; Chapin, F. S.; Thompson, Catharine Copass; McGuire, A.D.

2005-01-01

Surface energy exchanges were measured in a sequence of five sites representing the major vegetation types in the transition from arctic tundra to forest. This is the major transition in vegetation structure in northern high latitudes. We examined the influence of vegetation structure on the rates of sensible heating and evapotranspiration to assess the potential feedbacks to climate if high-latitude warming were to change the distribution of these vegetation types. Measurements were made at Council on the Seward Peninsula, Alaska, at representative tundra, low shrub, tall shrub, woodland (treeline), and boreal forest sites. Structural differences across the transition from tundra to forest included an increase in the leaf area index (LAI) from 0.52 to 2.76, an increase in canopy height from 0.1 to 6.1 m, and a general increase in canopy complexity. These changes in vegetation structure resulted in a decrease in albedo from 0.19 to 0.10 as well as changes to the partitioning of energy at the surface. Bulk surface resistance to water vapor flux remained virtually constant across sites, apparently because the combined soil and moss evaporation decreased while transpiration increased along the transect from tundra to forest. In general, sites became relatively warmer and drier along the transect with the convective fluxes being increasingly dominated by sensible heating, as evident by an increasing Bowen ratio from 0.94 to 1.22. The difference in growing season average daily sensible heating between tundra and forest was 21 W m-2. Fluxes changed non-linearly along the transition, with both shrubs and trees substantially enhancing heat transfer to the atmosphere. These changes in vegetation structure that increase sensible heating could feed back to enhance warming at local to regional scales. The magnitude of these vegetation effects on potential high-latitude warming is two to three times greater than suggested by previous modeling studies. ?? 2005 Elsevier B.V. All rights reserved.

Carbon storage in subalpine forests and meadows of the Olympic Mountains, Washington

DOE Office of Scientific and Technical Information (OSTI.GOV)

Prichard, S.J.; Peterson, D.L.

1995-06-01

We investigated carbon storage in high elevation ecosystems of the Olympic Mountains. A sharp precipitation gradient created by the Olympic mountain range allows for comparison of carbon storage in different climatic regimes and vegetation types. Carbon in soils, vegetation, and woody debris was examined in subalpine forests and meadows of the northeast (dry) and southwest (wet) Olympics. Soil carbon storage in high elevation sites appears to be considerably greater than most low elevation forests. Above-ground carbon storage is generally greater in southwest sites. Meadow soils contained high carbon concentrations in upper horizons, while forests also stored a substantial amount ofmore » carbon in lower horizons. Information gained from this study will provide a better understanding of soil-vegetation relationships in subalpine ecosystems, especially with respect to potential climatic change impacts.« less

Subsurface Oxygen in Oxide-Derived Copper Electrocatalysts for Carbon Dioxide Reduction

DOE PAGES

Eilert, Andre; Cavalca, Filippo; Roberts, F. Sloan; ...

2016-12-16

Copper electrocatalysts derived from an oxide have shown extraordinary electrochemical properties for the carbon dioxide reduction reaction (CO 2RR). Using in situ ambient pressure X-ray photoelectron spectroscopy and quasi in situ electron energy-loss spectroscopy in a transmission electron microscope, we show that there is a substantial amount of residual oxygen in nanostructured, oxide-derived copper electrocatalysts but no residual copper oxide. On the basis of these findings in combination with density functional theory simulations, we propose that residual subsurface oxygen changes the electronic structure of the catalyst and creates sites with higher carbon monoxide binding energy. If such sites are stablemore » under the strongly reducing conditions found in CO 2RR, these findings would explain the high efficiencies of oxide-derived copper in reducing carbon dioxide to multicarbon compounds such as ethylene.« less

Dynamic patterns and ecological impacts of declining ocean pH in a high-resolution multi-year dataset.

PubMed

Wootton, J Timothy; Pfister, Catherine A; Forester, James D

2008-12-02

Increasing global concentrations of atmospheric CO(2) are predicted to decrease ocean pH, with potentially severe impacts on marine food webs, but empirical data documenting ocean pH over time are limited. In a high-resolution dataset spanning 8 years, pH at a north-temperate coastal site declined with increasing atmospheric CO(2) levels and varied substantially in response to biological processes and physical conditions that fluctuate over multiple time scales. Applying a method to link environmental change to species dynamics via multispecies Markov chain models reveals strong links between in situ benthic species dynamics and variation in ocean pH, with calcareous species generally performing more poorly than noncalcareous species in years with low pH. The models project the long-term consequences of these dynamic changes, which predict substantial shifts in the species dominating the habitat as a consequence of both direct effects of reduced calcification and indirect effects arising from the web of species interactions. Our results indicate that pH decline is proceeding at a more rapid rate than previously predicted in some areas, and that this decline has ecological consequences for near shore benthic ecosystems.

Turf algae-mediated coral damage in coastal reefs of Belize, Central America.

PubMed

Wild, Christian; Jantzen, Carin; Kremb, Stephan Georg

2014-01-01

Many coral reefs in the Caribbean experienced substantial changes in their benthic community composition during the last decades. This often resulted in phase shifts from scleractinian coral dominance to that by other benthic invertebrate or algae. However, knowledge about how the related role of coral-algae contacts may negatively affect corals is scarce. Therefore, benthic community composition, abundance of algae grazers, and the abundance and character of coral-algae contacts were assessed in situ at 13 Belizean reef sites distributed along a distance gradient to the Belizean mainland (12-70 km): Mesoamerican Barrier Reef (inshore), Turneffe Atoll (inner and outer midshore), and Lighthouse Reef (offshore). In situ surveys revealed significantly higher benthic cover by scleractinian corals at the remote Lighthouse Reef (26-29%) when compared to the other sites (4-19%). The abundance of herbivorous fish and the sea urchin Diadema antillarum significantly increased towards the offshore reef sites, while the occurrence of direct coral-algae contacts consequently increased significantly with decreasing distance to shore. About 60% of these algae contacts were harmful (exhibiting coral tissue damage, pigmentation change, or overgrowth) for corals (mainly genera Orbicella and Agaricia), particularly when filamentous turf algae were involved. These findings provide support to the hypothesis that (turf) algae-mediated coral damage occurs in Belizean coastal, near-shore coral reefs.

Comparison of quadrant-specific breast cancer incidence trends in the United States and England between 1975 and 2013.

PubMed

Bright, C J; Rea, D W; Francis, A; Feltbower, R G

2016-10-01

UK breast cancer incidence rates suggest that upper outer quadrant (UOQ) cancers have risen disproportionately compared with other areas over time. We aimed to provide a comparison of the trend in quadrant-specific breast cancer incidence between the United States (US) and England, and determine whether a disproportionate UOQ increase is present. Surveillance Epidemiology and End Results (SEER) cancer registry data were obtained on 630,007 female breast cancers from 1975 to 2013. English cancer registry data were obtained on 1,121,134 female breast cancers from 1979 to 2013. Temporal incidence changes were analysed using negative binomial regression. Interaction terms determined whether incidence changes were similar between sites. English breast cancer incidence in the UOQ rose significantly from 13% to 28% from 1979 to 2013 whereas no significant increase was observed among SEER data. The significant interaction between quadrant and year of diagnosis (p<0.001) in both SEER and English data indicates that breast cancer incidence in each quadrant changed at a different rate. Incidence in the UOQ rose disproportionately compared to the nipple (SEER IRR=0.81, p<0.001; England IRR=0.78, p<0.001) and axillary tail (SEER IRR=0.87, p=0.018; England IRR=0.69, p<0.001) in both SEER and England. In addition, incidence rose disproportionately in the UOQ compared to non-site-specific tumours in England (Overlapping lesions IRR=0.81, p=0.002; NOS IRR=0.78, p<0.001). The proportion of non-site-specific tumours was substantially higher in England than SEER throughout the study period (62% in England; 39% in SEER). Breast cancer incidence in the UOQ increased disproportionately compared to non-site-specific tumours in England but not in SEER, likely due to the decrease in non-site-specific tumours observed in England over time. There may be real differences in incidence between the two countries, possibly due to differences in aetiology, but is much more likely to be an artefact of changing data collection methods and improvements in site coding in either country. Copyright © 2016 Elsevier Ltd. All rights reserved.

Nitrogen transformations following tropical forest felling and burning on a volcanic soil

NASA Technical Reports Server (NTRS)

Matson, Pamela A.; Vitousek, Peter M.; Ewel, John J.; Mazzarino, Maria Julia; Robertson, G. Philip

1987-01-01

Nitrogen transformations and loss were measured following forest clearing in a relatively fertile tropical forest site. Nitrogen mineralization, nitrification, and amounts of ammonium and nitrate increased substantially in surface soils during the 6 mo following burning, then returned to background levels. The nitrogen content of microbial biomass declined to half its original value 6 mo after clearing and remained low in the cleared sites. Plant uptake of nitrogen was substantial on cleared plots (50 g/sq m), but it accounted for only 18 percent of N-15 label added to field plots. MIcrobial immobilization of N-15 was small relative to that in a cleared temperate site, and measurements of denitrification potentials suggested that relatively little mineralized nitrogen was lost to the atmosphere. Substantial amounts of nitrogen (40-70 g/sq m) were retained as exchangeably bound nitrate deep in the soils of a cleared plot on which revegetation was prevented; this process accounted for 12 percent of the N-15 label added to field plots.

Attenuation of Landfill Leachate In Unsaturated Sandstone

NASA Astrophysics Data System (ADS)

Butler, A. P.; Brook, C.; Godley, A.; Lewin, K.; Young, C. P.

Landfill leachate emanating from old "dilute and disperse" sites represents a potential (and in many cases actual) threat to the integrity of groundwater. Indeed, this concern has been included in EU legislation (80/86/EEC), where key contaminants (e.g. ammonia, various toxic organic compounds and heavy metals) are explicitly highlighted in terms of their impact on groundwater. In the UK, whilst there are a substantial number of unlined landfills sited on major aquifers, many of these are in locations where there is a substantial unsaturated zone. Thus, there exists the opportunity for the modification and attenuation of contaminants prior to it encountering the water table. An understanding of likely changes in leachate content and concentrations at such sites will enable a more comprehensive assessment of the potential risks and liabilities posed by such sites to be evaluated. The Burntstump landfill, situated 8 km north of Nottingham (UK), is sited on an outcrop of Sherwood sandstone. The fine friable sand has been quarried since the 1960s and the excavated volume used to store municipal waste. Filling at the site commenced in the mid 1970s and originally was unlined. In 1978 the first of what was to become a series of boreholes was installed within an area of roughly 5 m radius over one of the original waste cells. Cores of the waste and underlying sandstone were extracted and analysed for a range of physical and chemical parameters. The most recent set of analyses were obtained in 2000. The series of investigations therefore provide an important record of leachate migration and modification through the unsaturated zone for over twenty years. The progression of the leachate front is clearly delineated by the chloride concentration profile with an average velocity of around 1.6 m.yr-1. Combining this value with an average (and reasonably uniform) measured moisture content of about 7% gives a mean inter-granular specific discharge of 110 mm.yr-1. An interesting feature of the sequences of porewater concentration profiles is the sharp leading front of the Cl plume. Thus indicating that very little solute dispersion appears to be occurring. This is probably to be due to the relatively uniform particle size of the sand matrix combined with the low moisture content, which has greatly constrained the available pore sizes in which flow occurs. A marked reduction in the mass of the chloride plume has been observed over the last 13 years. Analyses of core sample taken in 2000 show that the Cl profile has continued to lose mass and has now also separated into two peaks. The leading peak was located at a depth of 36 m below ground level (28 m below the base of the landfill) and in line with model predictions. The trailing peak was at a depth of 27 m bgl and was associated with a 0.3 m layer of marl and clay bands. Thus there is an indication that the changes in chloride mass are possibly due to the effects of heterogeneity, although other processes which could account for chloride removal from solution are also under consideration. The location of the TOC front up to 1992 was commensurate with that of Cl, indicating no effective retardation. This is consistent with the very low levels of organic carbon present in the sandstone. However, marked reductions in contaminant mass (substantially greater than those of Cl) have been observed. Analyses of volatile fatty acids has indicated a progressive breakdown of VFA components leading to simpler products so that by 1991 the dominant component was ethanoic acid (56% by mass). By 2000 the entire leading front of the TOC was absent. TOC was only found to be present at relatively low concentrations ( 100 mg.l-1) above the marl/clay band. Analyses of gas concentrations at the site have indicated that there has been a change in the redox potential in the volume of contaminated unsaturated sandstone below the waste cells during the last 10 years. With predominantly anaerobic conditions giving way to aerobic. This change appears to be related to the introduction of a landfill gas extraction system at the site, which has resulted in atmospheric oxygen being drawn into the underlying environment. Although the sandstone is relatively inert (CEC around 2 meq.100g-1), a clear retardation of the ammoniacal nitrogen is evident. The retardation coefficient is about 4 giving a linear equilibrium partition factor Kd of 0.15 cm3.g-1 (which is substantially lower than batch laboratory values of 1.2 ­ 2.0 cm3g-1). In addition, model simulations indicate a degree of attenuation of in ammonium concentrations, although the exact nature of this mechanism is still under investigation. Therefore, an analysis of the most recent results at the Burntstump site, set in the context of the historic data, indicates that the amount of attenuation present in 30 m of unsaturated sandstone is sufficient to mitigate most of the impact of MSW leachate emanating from a moderately wet landfill on the underlying groundwater. This has important implications both in terms of groundwater protection and the environmental liabilities for waste operators/site holders at similar sites.

Enhanced summer warming reduces fungal decomposer diversity and litter mass loss more strongly in dry than in wet tundra.

PubMed

Christiansen, Casper T; Haugwitz, Merian S; Priemé, Anders; Nielsen, Cecilie S; Elberling, Bo; Michelsen, Anders; Grogan, Paul; Blok, Daan

2017-01-01

Many Arctic regions are currently experiencing substantial summer and winter climate changes. Litter decomposition is a fundamental component of ecosystem carbon and nutrient cycles, with fungi being among the primary decomposers. To assess the impacts of seasonal climatic changes on litter fungal communities and their functioning, Betula glandulosa leaf litter was surface-incubated in two adjacent low Arctic sites with contrasting soil moisture regimes: dry shrub heath and wet sedge tundra at Disko Island, Greenland. At both sites, we investigated the impacts of factorial combinations of enhanced summer warming (using open-top chambers; OTCs) and deepened snow (using snow fences) on surface litter mass loss, chemistry and fungal decomposer communities after approximately 1 year. Enhanced summer warming significantly restricted litter mass loss by 32% in the dry and 17% in the wet site. Litter moisture content was significantly reduced by summer warming in the dry, but not in the wet site. Likewise, fungal total abundance and diversity were reduced by OTC warming at the dry site, while comparatively modest warming effects were observed in the wet site. These results suggest that increased evapotranspiration in the OTC plots lowered litter moisture content to the point where fungal decomposition activities became inhibited. In contrast, snow addition enhanced fungal abundance in both sites but did not significantly affect litter mass loss rates. Across sites, control plots only shared 15% of their fungal phylotypes, suggesting strong local controls on fungal decomposer community composition. Nevertheless, fungal community functioning (litter decomposition) was negatively affected by warming in both sites. We conclude that although buried soil organic matter decomposition is widely expected to increase with future summer warming, surface litter decay and nutrient turnover rates in both xeric and relatively moist tundra are likely to be significantly restricted by the evaporative drying associated with warmer air temperatures. © 2016 John Wiley & Sons Ltd.

Modern Timber Harvesting Practices Have Little Short-Term Effect on Soil Carbon Stores in Industrial Forests of Western Oregon and Washington, U.S.A.

NASA Astrophysics Data System (ADS)

Holub, S. M.; Hatten, J. A.

2017-12-01

Soil carbon represents a large, but slowly changing pool of carbon in forests and understanding its response to forest management, including harvesting, is critical for determining overall stand/landscape carbon balance. Past studies have observed mixed effects of harvesting on soil carbon possibly due, in part, to imprecise sampling methods and high variability within soils. Weyerhaeuser Company has led a major effort to examine the effect of conventional timber harvesting on long-term soil carbon stores in western Oregon and Washington Douglas-fir forests using a highly-replicated longitudinal study design that enables precise estimation of variability found in these systems. In 2010, we randomly selected nine harvest units from Weyerhaeuser's 2012 harvest plan. At each non-harvested unit, a uniform, non-rocky area of about 3-6 hectares was selected for the study. Pre-harvest soil samples were collected at 300 sample points from each unit on a fixed square grid, targeting an intensity that would allow detection of >5% change in soil carbon stores. We measured soil carbon concentration and soil bulk density in depth increments to 1 m to allow for the calculation of total soil carbon per hectare. Other ecosystem pools of carbon, such as trees and downed wood, also have been measured to complete the whole-site carbon budget. All units were harvested from late 2011 through mid-year 2012. In 2015, 3-3.5 years post-harvest, we resampled the same areas in an identical manner as the pre-harvest collection to evaluate changes in soil carbon following harvest. Across all sites combined, we estimated a +2% change (-2% to +6%, 95% confidence interval) in mineral soil carbon following harvest, which is consistent with small-to-no change. Individual sites varied in direction of response; only one site showed evidence of a slight decrease in soil carbon, while two sites showed slight gains. These early results indicate that Weyerhaeuser's conventional timber harvesting methods in the Pacific Northwest do not cause substantial short-term losses in soil carbon. Continued monitoring is necessary, however, to document the longer-term trajectory of soil carbon levels through stand development.

Occupancy estimation and the closure assumption

USGS Publications Warehouse

Rota, Christopher T.; Fletcher, Robert J.; Dorazio, Robert M.; Betts, Matthew G.

2009-01-01

1. Recent advances in occupancy estimation that adjust for imperfect detection have provided substantial improvements over traditional approaches and are receiving considerable use in applied ecology. To estimate and adjust for detectability, occupancy modelling requires multiple surveys at a site and requires the assumption of 'closure' between surveys, i.e. no changes in occupancy between surveys. Violations of this assumption could bias parameter estimates; however, little work has assessed model sensitivity to violations of this assumption or how commonly such violations occur in nature. 2. We apply a modelling procedure that can test for closure to two avian point-count data sets in Montana and New Hampshire, USA, that exemplify time-scales at which closure is often assumed. These data sets illustrate different sampling designs that allow testing for closure but are currently rarely employed in field investigations. Using a simulation study, we then evaluate the sensitivity of parameter estimates to changes in site occupancy and evaluate a power analysis developed for sampling designs that is aimed at limiting the likelihood of closure. 3. Application of our approach to point-count data indicates that habitats may frequently be open to changes in site occupancy at time-scales typical of many occupancy investigations, with 71% and 100% of species investigated in Montana and New Hampshire respectively, showing violation of closure across time periods of 3 weeks and 8 days respectively. 4. Simulations suggest that models assuming closure are sensitive to changes in occupancy. Power analyses further suggest that the modelling procedure we apply can effectively test for closure. 5. Synthesis and applications. Our demonstration that sites may be open to changes in site occupancy over time-scales typical of many occupancy investigations, combined with the sensitivity of models to violations of the closure assumption, highlights the importance of properly addressing the closure assumption in both sampling designs and analysis. Furthermore, inappropriately applying closed models could have negative consequences when monitoring rare or declining species for conservation and management decisions, because violations of closure typically lead to overestimates of the probability of occurrence.

One Mars year: viking lander imaging observations.

PubMed

Jones, K L; Arvidson, R E; Guinness, E A; Bragg, S L; Wall, S D; Carlston, C E; Pidek, D G

1979-05-25

Throughout the complete Mars year during which they have been on the planet, the imaging systems aboard the two Viking landers have documented a variety of surface changes. Surface condensates, consisting of both solid H(2)O and CO(2), formed at the Viking 2 lander site during the winter. Additional observations suggest that surface erosion rates due to dust redistribution may be substantially less than those predicted on the basis of pre-Viking observations. The Viking 1 lander will continue to acquire and transmit a predetermined sequence of imaging and meteorology data as long as it is operative.

19 CFR 134.35 - Articles substantially changed by manufacture.

Code of Federal Regulations, 2012 CFR

2012-04-01

... 19 Customs Duties 1 2012-04-01 2012-04-01 false Articles substantially changed by manufacture. 134...; DEPARTMENT OF THE TREASURY COUNTRY OF ORIGIN MARKING Exceptions to Marking Requirements § 134.35 Articles substantially changed by manufacture. (a) Articles other than goods of a NAFTA country. An article used in the...

19 CFR 134.35 - Articles substantially changed by manufacture.

Code of Federal Regulations, 2010 CFR

2010-04-01

... 19 Customs Duties 1 2010-04-01 2010-04-01 false Articles substantially changed by manufacture. 134...; DEPARTMENT OF THE TREASURY COUNTRY OF ORIGIN MARKING Exceptions to Marking Requirements § 134.35 Articles substantially changed by manufacture. (a) Articles other than goods of a NAFTA country. An article used in the...

19 CFR 134.35 - Articles substantially changed by manufacture.

Code of Federal Regulations, 2011 CFR

2011-04-01

... 19 Customs Duties 1 2011-04-01 2011-04-01 false Articles substantially changed by manufacture. 134...; DEPARTMENT OF THE TREASURY COUNTRY OF ORIGIN MARKING Exceptions to Marking Requirements § 134.35 Articles substantially changed by manufacture. (a) Articles other than goods of a NAFTA country. An article used in the...

Assessment of hydrology, water quality, and trace elements in selected placer-mined creeks in the birch creek watershed near central, Alaska, 2001-05

USGS Publications Warehouse

Kennedy, Ben W.; Langley, Dustin E.

2007-01-01

Executive Summary The U.S. Geological Survey, in cooperation with the Bureau of Land Management, completed an assessment of hydrology, water quality, and trace-element concentrations in streambed sediment of the upper Birch Creek watershed near Central, Alaska. The assessment covered one site on upper Birch Creek and paired sites, upstream and downstream from mined areas, on Frying Pan Creek and Harrison Creek. Stream-discharge and suspended-sediment concentration data collected at other selected mined and unmined sites helped characterize conditions in the upper Birch Creek watershed. The purpose of the project was to provide the Bureau of Land Management with baseline information to evaluate watershed water quality and plan reclamation efforts. Data collection began in September 2001 and ended in September 2005. There were substantial geomorphic disturbances in the stream channel and flood plain along several miles of Harrison Creek. Placer mining has physically altered the natural stream channel morphology and removed streamside vegetation. There has been little or no effort to re-contour waste rock piles. During high-flow events, the abandoned placer-mine areas on Harrison Creek will likely contribute large quantities of sediment downstream unless the mined areas are reclaimed. During 2004 and 2005, no substantial changes in nutrient or major-ion concentrations were detected in water samples collected upstream from mined areas compared with water samples collected downstream from mined areas on Frying Pan Creek and Harrison Creek that could not be attributed to natural variation. This also was true for dissolved oxygen, pH, and specific conductance-a measure of total dissolved solids. Sample sites downstream from mined areas on Harrison Creek and Frying Pan Creek had higher median suspended-sediment concentrations, by a few milligrams per liter, than respective upstream sites. However, it is difficult to attach much importance to the small downstream increase, less than 10 milligrams per liter, in median suspended-sediment concentration for either basin. During low-flow conditions in 2004 and 2005, previously mined areas investigated on Harrison Creek and on Frying Pan Creek did not contribute substantial suspended sediments to sample sites downstream from the mined areas. No substantial mining-related water- or sediment-quality problems were detected at any of the sites investigated in the upper Birch Creek watershed during low-flow conditions. Average annual streamflow and precipitation were near normal in 2002 and 2003. Drought conditions, extreme forest fire impact, and low annual streamflow set apart the 2004 and 2005 summer seasons. Daily mean streamflow for upper Birch Creek varied throughout the period of record-from maximums of about 1,000 cubic feet per second to minimums of about 20 cubic feet per second. Streamflow increased and decreased rapidly in response to rainfall and rapid snowmelt events because the steep slopes, thin soil cover, and permafrost areas in the watershed have little capacity to retain runoff. Median suspended-sediment concentrations for the 115 paired samples from Frying Pan Creek and 101 paired samples from Harrison Creek were less than the 20 milligrams per liter total maximum daily load. The total maximum daily load was set by the U.S. Environmental Protection Agency for the upper Birch Creek basin in 1996. Suspended-sediment paired-sample data were collected using automated samplers in 2004 and 2005, primarily during low-flow conditions. Suspended-sediment concentrations in grab samples from miscellaneous sites ranged from less than 1 milligram per liter during low-flow conditions to 1,386 milligrams per liter during a high-flow event on upper Birch Creek. Streambed-sediment samples were collected at six sites on Harrison Creek, two sites on Frying Pan Creek, and one site on upper Birch Creek. Trace-element concentrations of mercury, lead, and zinc in streambed sedimen

Sudden disintegration of ice in the glacial-proglacial transition zone of the largest glacier in Austria

NASA Astrophysics Data System (ADS)

Kellerer-Pirklbauer, Andreas; Avian, Michael; Hirschmann, Simon; Lieb, Gerhard Karl; Seier, Gernot; Sulzer, Wolfgang; Wakonigg, Herwig

2017-04-01

Rapid deglaciation does not only reveal a landscape which is prone to rapid geomorphic changes and sediment reworking but also the glacier ice itself might be in a state of disintegration by ice melting, pressure relief, crevasse formation, ice collapse or changes in the glacier's hydrology. In this study we considered the sudden disintegration of glacier ice in the glacial-proglacial transition zone of Pasterze Glacier. Pasterze Glacier is a typical alpine valley glacier and covers currently some 16.5 km2 making it to the largest glacier in Austria. This glacier is an important site for alpine mass tourism in Austria related to a public high alpine road and a cable car which enable access to the glacier rather easily also for unexperienced mountaineers. Spatial focus in our research is given on two particular study areas where several ice-mass movement events occurred during the 2015- and 2016-melting seasons. The first study area is a crevasse field at the lower third of the glacier tongue. This lateral crevasse field has been substantially modified during the last two melting seasons particularly because of thermo-erosional effects of a glacial stream which changed at this site from subglacial (until 2015) to glacier-lateral revealing a several tens of meters high unstable ice cliff prone to ice falls of different magnitudes. The second study area is located at the proglacial area. At Pasterze Glacier the proglacial area is widely influenced by dead-ice bodies of various dimensions making this area prone to slow to sudden geomorphic changes caused by ice mass changes. A particular ice-mass movement event took place on 20.09.2016. Within less than one hour the surface of the proglacial area changed substantially by tilting, lateral shifting, and subsidence of the ground accompanied by complete ice disintegration of once-debris covered ice. To understand acting processes at both areas of interest and to quantify mass changes we used field observations, terrain analysis (based on multi-temporal DEM generation derived from terrestrial laser scanning/TLS and unmanned aerial systems/UAS), electrical resistivity tomography (ERT), ground climate monitoring, and data from an automatic remote camera (RDC) system. Results for both areas of interest are presented and discussed regarding its relevance for the glacier itself but also the potential risks for mountaineers.

Methane flux and carbon isotope composition correlate to shifting plant and microbial communities along a permafrost thaw gradient

NASA Astrophysics Data System (ADS)

McCalley, C. K.; Mondav, R.; Chanton, J.; Crill, P. M.; Hodgkins, S. B.; Kim, E.; Rich, V. I.; Wehr, R.; Woodcroft, B. J.; Tyson, G. W.; Saleska, S. R.

2012-12-01

Methane flux from high latitude wetlands is a critical component of the global carbon budget and is highly sensitive to climate change, with observed and predicted increases as permafrost thaws. Microorganisms mediate wetland methane cycling, but connections between ecosystem-scale flux and underlying microbial dynamics are poorly understood. To address this gap we used isotopic (laser absorption spectrometry) and molecular (16S rRNA gene amplicon sequencing) techniques in a high latitude (68° N) wetland to investigate the relationship between microbial community composition and methane emissions across a permafrost thaw gradient. The transition from permafrost dominated, well drained palsas, through intermediate thaw sites dominated by Sphagnum spp., to wet sites with no underlying permafrost dominated by Eriophorum angustifolium is associated with substantial increases in methane emission. Across this thaw progression the carbon isotopic composition of emitted methane increased from -79.5 ‰ in the intermediate-thawing site to -66.4 ‰ in the thawed site, indicating a relative shift from CO2-reductive towards acetoclastic methanogenesis. Increases in methane flux under thaw were correlated with increasing abundance of methane-producing archaeal clades and increases in methane isotopic composition were associated with shifts in the archaeal community. While CO2 reducing methanogens were found throughout thawing and thawed sites, methanogens of the Methanosarcina (the order of Archaea that contains all known acetoclastic methanogens) were most associated with the fully thawed site. These results directly link microbial community composition to ecosystem scale changes in the magnitude and isotopic composition of methane emissions under permafrost thaw. If isotopic shifts of this magnitude are characteristic of methane dynamics under permafrost loss they should also become detectable in global atmospheric methane observations, providing a global scale tracer of shifting microbial communities associated with permafrost thaw.

Cloud shading and fog drip influence the metabolism of a coastal pine ecosystem.

PubMed

Carbone, Mariah S; Park Williams, A; Ambrose, Anthony R; Boot, Claudia M; Bradley, Eliza S; Dawson, Todd E; Schaeffer, Sean M; Schimel, Joshua P; Still, Christopher J

2013-02-01

Assessing the ecological importance of clouds has substantial implications for our basic understanding of ecosystems and for predicting how they will respond to a changing climate. This study was conducted in a coastal Bishop pine forest ecosystem that experiences regular cycles of stratus cloud cover and inundation in summer. Our objective was to understand how these clouds impact ecosystem metabolism by contrasting two sites along a gradient of summer stratus cover. The site that was under cloud cover ~15% more of the summer daytime hours had lower air temperatures and evaporation rates, higher soil moisture content, and received more frequent fog drip inputs than the site with less cloud cover. These cloud-driven differences in environmental conditions translated into large differences in plant and microbial activity. Pine trees at the site with greater cloud cover exhibited less water stress in summer, larger basal area growth, and greater rates of sap velocity. The difference in basal area growth between the two sites was largely due to summer growth. Microbial metabolism was highly responsive to fog drip, illustrated by an observed ~3-fold increase in microbial biomass C with increasing summer fog drip. In addition, the site with more cloud cover had greater total soil respiration and a larger fractional contribution from heterotrophic sources. We conclude that clouds are important to the ecological functioning of these coastal forests, providing summer shading and cooling that relieve pine and microbial drought stress as well as regular moisture inputs that elevate plant and microbial metabolism. These findings are important for understanding how these and other seasonally dry coastal ecosystems will respond to predicted changes in stratus cover, rainfall, and temperature. © 2012 Blackwell Publishing Ltd.

Disulfide bridge regulates ligand-binding site selectivity in liver bile acid-binding proteins.

PubMed

Cogliati, Clelia; Tomaselli, Simona; Assfalg, Michael; Pedò, Massimo; Ferranti, Pasquale; Zetta, Lucia; Molinari, Henriette; Ragona, Laura

2009-10-01

Bile acid-binding proteins (BABPs) are cytosolic lipid chaperones that play central roles in driving bile flow, as well as in the adaptation to various pathological conditions, contributing to the maintenance of bile acid homeostasis and functional distribution within the cell. Understanding the mode of binding of bile acids with their cytoplasmic transporters is a key issue in providing a model for the mechanism of their transfer from the cytoplasm to the nucleus, for delivery to nuclear receptors. A number of factors have been shown to modulate bile salt selectivity, stoichiometry, and affinity of binding to BABPs, e.g. chemistry of the ligand, protein plasticity and, possibly, the formation of disulfide bridges. Here, the effects of the presence of a naturally occurring disulfide bridge on liver BABP ligand-binding properties and backbone dynamics have been investigated by NMR. Interestingly, the disulfide bridge does not modify the protein-binding stoichiometry, but has a key role in modulating recognition at both sites, inducing site selectivity for glycocholic and glycochenodeoxycholic acid. Protein conformational changes following the introduction of a disulfide bridge are small and located around the inner binding site, whereas significant changes in backbone motions are observed for several residues distributed over the entire protein, both in the apo form and in the holo form. Site selectivity appears, therefore, to be dependent on protein mobility rather than being governed by steric factors. The detected properties further establish a parallelism with the behaviour of human ileal BABP, substantiating the proposal that BABPs have parallel functions in hepatocytes and enterocytes.

Fire activity and hydrological dynamics in the past 5700 years reconstructed from Sphagnum peatlands along the oceanic-continental climatic gradient in northern Poland

NASA Astrophysics Data System (ADS)

Marcisz, Katarzyna; Gałka, Mariusz; Pietrala, Patryk; Miotk-Szpiganowicz, Grażyna; Obremska, Milena; Tobolski, Kazimierz; Lamentowicz, Mariusz

2017-12-01

Fire is a critical component of many ecosystems and, as predicted by various climate models, fire activity may increase significantly in the following years due to climate change. Therefore, knowledge about the past fire activity of various ecosystems is highly important for future nature conservation purposes. We present results of high-resolution investigation of fire activity and hydrological changes in northern Poland. We analyzed microscopic charcoal from three Sphagnum-dominated peatlands located on the south of Baltic, on the oceanic-continental (west-east) climatic gradient, and reconstructed the history of fire in the last 5700 years. We hypothesize that air circulation patterns are highly important for local fire activity, and that fire activity is more intensive in peatlands influenced by continental air masses. We have found out that forest fires have been occurring regularly since the past millennia and were linked to climatic conditions. We show that fire activity (related to climate and fuel availability) was significantly higher in sites dominated by continental climate (northeastern Poland) than in the site located under oceanic conditions (northwestern Poland)-microscopic charcoal influx was 13.3 times higher in the eastern study site of the gradient, compared to the western study site. Recorded fire activity patterns were different between the sites in a long timescale. Moreover, most of the recorded charcoal peaks occurred during high water tables. Rising human pressure has caused droughts and water table instability, and substantial increase in fire activity in the last 400 years.

A Quality Improvement Collaborative Program for Neonatal Pain Management in Japan

PubMed Central

Yokoo, Kyoko; Funaba, Yuuki; Fukushima, Sayo; Fukuhara, Rie; Uchida, Mieko; Aiba, Satoru; Doi, Miki; Nishimura, Akira; Hayakawa, Masahiro; Nishimura, Yutaka; Oohira, Mitsuko

2017-01-01

Background: Neonatal pain management guidelines have been released; however, there is insufficient systematic institutional support for the adoption of evidence-based pain management in Japan. Purpose: To evaluate the impact of a collaborative quality improvement program on the implementation of pain management improvements in Japanese neonatal intensive care units (NICUs). Methods: Seven Japanese level III NICUs participated in a neonatal pain management quality improvement program based on an Institute for Healthcare Improvement collaborative model. The NICUs developed evidence-based practice points for pain management and implemented these over a 12-month period. Changes were introduced through a series of Plan-Do-Study-Act cycles, and throughout the process, pain management quality indicators were tracked as performance measures. Jonckheere's trend test and the Cochran-Armitage test for trend were used to examine the changes in quality indicator implementations over time (baseline, 3 months, 6 months, and 12 months). Findings: Baseline pain management data from the 7 sites revealed substantial opportunities for improvement of pain management, and testing changes in the NICU setting resulted in measurable improvements in pain management. During the intervention phase, all participating sites introduced new pain assessment tools, and all sites developed electronic medical record forms to capture pain score, interventions, and infant responses to interventions. Implications for Practice: The use of collaborative quality improvement techniques played a key role in improving pain management in the NICUs. Implications for Research: Collaborative improvement programs provide an attractive strategy for solving evidence-practice gaps in the NICU setting. PMID:28114148

Mortality, Recruitment and Change of Desert Tree Populations in a Hyper-Arid Environment

PubMed Central

Andersen, Gidske L.; Krzywinski, Knut

2007-01-01

Background Long-term vegetation changes in hyper-arid areas have long been neglected. Mortality, recruitment and change in populations of the ecologically and culturally important and drought persistent Acacia tortilis and Balanites aegyptiaca are therefore estimated in the Eastern Desert of Egypt, and are related to the primary agents of change, water conditions and human intervention. Methodology A change analysis using high-resolution Corona images (1965) in combination with field data (2003) is the basis for recruitment, mortality and change estimates. For assessing the influence of water conditions on patterns in recruitment and survival, different types of generalized linear models are tested. Conclusions The overall trend in population size in that part of the Eastern Desert studied here is negative. At some sites this negative trend is alarming, because the reduction in mature trees is substantial (>50%) at the same time as recruitment is nearly absent. At a few sites there is a positive trend and better recruitment. Frequent observations of sprouting in saplings indicate that this is an important mechanism to increase their persistence. It is the establishment itself that seems to be the main challenge in the recruitment process. There are indications that hydrological variables and surface water in particular can explain some of the observed pattern in mortality, but our results indicate that direct human intervention, i.e., charcoal production, is the main cause of tree mortality in the Eastern Desert. PMID:17299588

Water-level altitudes and continuous and discrete water quality at and near an aquifer storage and recovery site, Bexar, Atascosa, and Wilson Counties, Texas, June 2004-September 2011

USGS Publications Warehouse

Crow, Cassi L.

2012-01-01

The U.S. Geological Survey (USGS), in cooperation with the San Antonio Water System (SAWS), collected data during 2004–11 to characterize the quality of native groundwater from the San Antonio segment of the Edwards aquifer (hereinafter, Edwards aquifer) and preinjection and postinjection water from the Carrizo aquifer (informal name commonly applied to the upper part of the Carrizo-Wilcox aquifer in the area) at and near an aquifer storage and recovery (ASR) site in Bexar, Atascosa, and Wilson Counties, Texas. Daily mean water-level altitude, water temperature, and specific conductance were measured continuously in a monitoring well on the ASR site to determine how injection and withdrawal at the ASR site might affect local groundwater. Groundwater samples were collected and analyzed for selected physical properties and constituents to characterize the quality of native groundwater from the Edwards aquifer and preinjection and postinjection water from the Carrizo aquifer near the ASR site to provide a better understanding of possible changes in the quality of groundwater near an active ASR site that might result from the mixing of water from different aquifers. During injection periods, the water-level altitude in the monitoring well generally increased as the amount of water being injected into all wells at the ASR site increased and decreased as the amount of water being injected into all wells at the ASR site decreased. During withdrawal periods, the water-level altitude in the monitoring well generally increased as the total volume of water being withdrawn from all wells at the ASR site decreased and generally decreased as the total volume of water being withdrawn from all wells increased. Daily mean water temperature fluctuated by less than 1 degree Celsius and was determined to be independent of injection or withdrawal conditions at the ASR site. Changes in daily mean specific-conductance values measured at four depths in the monitoring well at the ASR site occurred without regard to total ASR site injection or withdrawal volumes. No substantial differences were measured over time in major-ion, trace-element, or isotope chemistry of water samples collected from the wells that supplied water from the Edwards aquifer. Little variation in water chemistry was detected in the samples collected from four wells designed to inject and withdraw water at the ASR site, regardless of whether the ASR site was injecting or withdrawing water. The similarity of major-ion and isotope chemistry between the Edwards aquifer source wells and the four ASR wells indicates that little, if any, migration of injected water away from the ASR wells has occurred. In a well located closest to the ASR site in the direction of regional flow for the Carrizo aquifer, a greater alkalinity value and a smaller concentration of chloride were measured in the most recent sample than in all other samples collected at this well. Substantial increases in dissolved iron and manganese concentrations also were observed in this well. The increased alkalinity value and dissolved iron and manganese concentrations and the decreased chloride concentration in the well could indicate that the injected water from the Edwards aquifer had begun to move into at least a part of the strata supplying these wells and might be causing iron and manganese mobilization in the Carrizo aquifer.

Reliability, standard error, and minimum detectable change of clinical pressure pain threshold testing in people with and without acute neck pain.

PubMed

Walton, David M; Macdermid, Joy C; Nielson, Warren; Teasell, Robert W; Chiasson, Marco; Brown, Lauren

2011-09-01

Clinical measurement. To evaluate the intrarater, interrater, and test-retest reliability of an accessible digital algometer, and to determine the minimum detectable change in normal healthy individuals and a clinical population with neck pain. Pressure pain threshold testing may be a valuable assessment and prognostic indicator for people with neck pain. To date, most of this research has been completed using algometers that are too resource intensive for routine clinical use. Novice raters (physiotherapy students or clinical physiotherapists) were trained to perform algometry testing over 2 clinically relevant sites: the angle of the upper trapezius and the belly of the tibialis anterior. A convenience sample of normal healthy individuals and a clinical sample of people with neck pain were tested by 2 different raters (all participants) and on 2 different days (healthy participants only). Intraclass correlation coefficient (ICC), standard error of measurement, and minimum detectable change were calculated. A total of 60 healthy volunteers and 40 people with neck pain were recruited. Intrarater reliability was almost perfect (ICC = 0.94-0.97), interrater reliability was substantial to near perfect (ICC = 0.79-0.90), and test-retest reliability was substantial (ICC = 0.76-0.79). Smaller change was detectable in the trapezius compared to the tibialis anterior. This study provides evidence that novice raters can perform digital algometry with adequate reliability for research and clinical use in people with and without neck pain.

Assessment of boreal forest historical C dynamics in the Yukon River Basin: relative roles of warming and fire regime change.

PubMed

Yuan, F M; Yi, S H; McGuire, A D; Johnson, K D; Liang, J; Harden, J W; Kasischke, E S; Kurz, W A

2012-12-01

Carbon (C) dynamics of boreal forest ecosystems have substantial implications for efforts to mitigate the rise of atmospheric CO2 and may be substantially influenced by warming and changing wildfire regimes. In this study we applied a large-scale ecosystem model that included dynamics of organic soil horizons and soil organic matter characteristics of multiple pools to assess forest C stock changes of the Yukon River Basin (YRB) in Alaska, USA, and Canada from 1960 through 2006, a period characterized by substantial climate warming and increases in wildfire. The model was calibrated for major forests with data from long-term research sites and evaluated using a forest inventory database. The regional assessment indicates that forest vegetation C storage increased by 46 Tg C, but that total soil C storage did not change appreciably during this period. However, further analysis suggests that C has been continuously lost from the mineral soil horizon since warming began in the 1970s, but has increased in the amorphous organic soil horizon. Based on a factorial experiment, soil C stocks would have increased by 158 Tg C if the YRB had not undergone warming and changes in fire regime. The analysis also identified that warming and changes in fire regime were approximately equivalent in their effects on soil C storage, and interactions between these two suggests that the loss of organic horizon thickness associated with increases in wildfire made deeper soil C stocks more vulnerable to loss via decomposition. Subbasin analyses indicate that C stock changes were primarily sensitive to the fraction of burned forest area within each subbasin and that boreal forest ecosystems in the YRB are currently transitioning from being sinks to sources at -0.7% annual area burned. We conclude that it is important for international mitigation efforts focused on controlling atmospheric CO2 to consider how climate warming and changes in fire regime may concurrently affect the CO2 sink strength of boreal forests. It is also important for large-scale biogeochemical and earth system models to include organic soil dynamics in applications to assess regional C dynamics of boreal forests responding to warming and changes in fire regime.

Assessment of boreal forest historical C dynamics in Yukon River Basin: relative roles of warming and fire regime change

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yuan, Fengming; Yi, Shuhua; McGuire, A. David

2012-01-01

Carbon (C) dynamics of boreal forest ecosystems have substantial implications for efforts to mitigate the rise of atmospheric CO2 and may be substantially influenced by warming and changing wildfire regimes. In this study we applied a large-scale ecosystem model that included dynamics of organic soil horizons and soil organic matter characteristics of multiple pools to assess forest C stock changes of the Yukon River Basin (YRB) in Alaska, USA, and Canada from 1960 through 2006, a period characterized by substantial climate warming and increases in wildfire. The model was calibrated for major forests with data from long-term research sites andmore » evaluated using a forest inventory database. The regional assessment indicates that forest vegetation C storage increased by 46 Tg C, but that total soil C storage did not change appreciably during this period. However, further analysis suggests that C has been continuously lost from the mineral soil horizon since warming began in the 1970s, but has increased in the amorphous organic soil horizon. Based on a factorial experiment, soil C stocks would have increased by 158 Tg C if the YRB had not undergone warming and changes in fire regime. The analysis also identified that warming and changes in fire regime were approximately equivalent in their effects on soil C storage, and interactions between these two suggests that the loss of organic horizon thickness associated with increases in wildfire made deeper soil C stocks more vulnerable to loss via decomposition. Subbasin analyses indicate that C stock changes were primarily sensitive to the fraction of burned forest area within each subbasin and that boreal forest ecosystems in the YRB are currently transitioning from being sinks to sources at ;0.7% annual area burned. We conclude that it is important for international mitigation efforts focused on controlling atmospheric CO2 to consider how climate warming and changes in fire regime may concurrently affect the CO2 sink strength of boreal forests. It is also important for large-scale biogeochemical and earth system models to include organic soil dynamics in applications to assess regional C dynamics of boreal forests responding to warming and changes in fire regime.« less

Assessment of boreal forest historical C dynamics in the Yukon River Basin: relative roles of warming and fire regime change

USGS Publications Warehouse

Yuan, F.M.; Yi, S.H.; McGuire, A.D.; Johnson, K.D.; Liang, J.; Harden, J.W.; Kasischke, E.S.; Kurz, W.A.

2012-01-01

Carbon (C) dynamics of boreal forest ecosystems have substantial implications for efforts to mitigate the rise of atmospheric CO2 and may be substantially influenced by warming and changing wildfire regimes. In this study we applied a large-scale ecosystem model that included dynamics of organic soil horizons and soil organic matter characteristics of multiple pools to assess forest C stock changes of the Yukon River Basin (YRB) in Alaska, USA, and Canada from 1960 through 2006, a period characterized by substantial climate warming and increases in wildfire. The model was calibrated for major forests with data from long-term research sites and evaluated using a forest inventory database. The regional assessment indicates that forest vegetation C storage increased by 46 Tg C, but that total soil C storage did not change appreciably during this period. However, further analysis suggests that C has been continuously lost from the mineral soil horizon since warming began in the 1970s, but has increased in the amorphous organic soil horizon. Based on a factorial experiment, soil C stocks would have increased by 158 Tg C if the YRB had not undergone warming and changes in fire regime. The analysis also identified that warming and changes in fire regime were approximately equivalent in their effects on soil C storage, and interactions between these two suggests that the loss of organic horizon thickness associated with increases in wildfire made deeper soil C stocks more vulnerable to loss via decomposition. Subbasin analyses indicate that C stock changes were primarily sensitive to the fraction of burned forest area within each subbasin and that boreal forest ecosystems in the YRB are currently transitioning from being sinks to sources at ∼0.7% annual area burned. We conclude that it is important for international mitigation efforts focused on controlling atmospheric CO2 to consider how climate warming and changes in fire regime may concurrently affect the CO2 sink strength of boreal forests. It is also important for large-scale biogeochemical and earth system models to include organic soil dynamics in applications to assess regional C dynamics of boreal forests responding to warming and changes in fire regime.

Effects of sea-level rise on barrier island groundwater system dynamics: ecohydrological implications

USGS Publications Warehouse

Masterson, John P.; Fienen, Michael N.; Thieler, E. Robert; Gesch, Dean B.; Gutierrez, Benjamin T.; Plant, Nathaniel G.

2014-01-01

We used a numerical model to investigate how a barrier island groundwater system responds to increases of up to 60 cm in sea level. We found that a sea-level rise of 20 cm leads to substantial changes in the depth of the water table and the extent and depth of saltwater intrusion, which are key determinants in the establishment, distribution and succession of vegetation assemblages and habitat suitability in barrier islands ecosystems. In our simulations, increases in water-table height in areas with a shallow depth to water (or thin vadose zone) resulted in extensive groundwater inundation of land surface and a thinning of the underlying freshwater lens. We demonstrated the interdependence of the groundwater response to island morphology by evaluating changes at three sites. This interdependence can have a profound effect on ecosystem composition in these fragile coastal landscapes under long-term changing climatic conditions.

Land Use and Climate Alter Carbon Dynamics in Watersheds of Chesapeake Bay

NASA Astrophysics Data System (ADS)

Kaushal, S.; Duan, S.; Grese, M.; Pennino, M. J.; Belt, K. T.; Findlay, S.; Groffman, P. M.; Mayer, P. M.; Murthy, S.; Blomquist, J.

2011-12-01

There have been long-term changes in the quantity of organic carbon in streams and rivers globally. Shifts in the quality of organic carbon due to environmental changes may also impact downstream ecosystem metabolism and fate and transport of contaminants. We investigated long-term impacts of land use and hydrologic variability on organic carbon transport in watersheds of the Baltimore Long-Term Ecological Research (LTER) site and large rivers of the Chesapeake Bay. In small and medium-sized watersheds of the Baltimore LTER site, urban land use increased organic carbon concentrations in streams several-fold compared to forest and agricultural watersheds. Enzymatic activities of stream microbes were significantly altered across watershed land use during a record wet year. During the wet year, short-term bioassays showed that bioavailable dissolved organic carbon varied seasonally, but comprised a substantial proportion of the dissolved organic carbon pool. Similarly, measurements of biochemical oxygen demand across hydrologic variability suggest that reactive organic carbon export from small and medium-sized urban watersheds during storms can be substantial. At a larger regional scale, major tributaries such as the Potomac, Susquehanna, Patuxent, and Choptank rivers also showed similar variability as smaller watersheds in quantity and quality of organic carbon based on land use and climate. There were distinct isotopic values of d13C of particulate organic matter and fluorescence excitation emission matrices for rivers influenced by different land uses. Stable isotopic values of d13C of particulate organic matter and fluorescence excitation emission matrices showed marked seasonal changes in organic matter quality during spring floods in the Potomac River at Washington D.C. Across watershed size, there appeared to be differences in seasonal cycles of organic carbon quality and this may have been based on the degree of hydrologic connectivity between watersheds and streams and rivers. Overall, our results suggest that land use and climate can alter quantity and quality of carbon delivered from coastal watersheds and this may have impacts on downstream estuarine ecosystem processes.

Rising from the ashes: Changes in salmonid fish assemblages after 30 months of the Puyehue-Cordon Caulle volcanic eruption.

PubMed

Lallement, Mailén; Macchi, Patricio J; Vigliano, Pablo; Juarez, Santiago; Rechencq, Magalí; Baker, Matthew; Bouwes, Nicolaas; Crowl, Todd

2016-01-15

Events such as volcanic eruptions may act as disturbance agents modifying the landscape spatial diversity and increasing environmental instability. On June 4, 2011 the Puyehue-Cordon Caulle volcanic complex located on Chile (2236 m.a.s.l., 40° 02' 24" S- 70° 14' 26" W) experience a rift zone eruption ejecting during the first day 950 million metric tons into the atmosphere. Due to the westerly winds predominance, ash fell differentially upon 24 million ha of Patagonia Argentinean, been thicker deposits accumulated towards the West. In order to analyze changes on stream fish assemblages we studied seven streams 8, 19 and 30 months after the eruption along the ash deposition gradient, and compare those data to pre eruption ones. Habitat features and structure of the benthic macroinvertebrate food base of fish was studied. After the eruption, substantial environmental changes were observed in association with the large amount of ash fallout. In western sites, habitat loss due to ash accumulation, changes in the riparian zone and morphology of the main channels were observed. Turbidity was the water quality variable which reflected the most changes throughout time, with NTU values decreasing sharply from West to East sites. In west sites, increased Chironomid densities were recorded 8 months after the initial eruption as well as low EPT index values. These relationships were reversed in the less affected streams farther away from the volcano. Fish assemblages were greatly influenced both by habitat and macroinvertebrate changes. The eruption brought about an initial sharp decline in fish densities and the almost total loss of young of the year in the most western streams affecting recruitment. This effect diminished rapidly with distance from the emission center. Thirty months after the eruption, environmental changes are still occurring as a consequence of basin wide ash remobilization and transport.

TargetSpy: a supervised machine learning approach for microRNA target prediction.

PubMed

Sturm, Martin; Hackenberg, Michael; Langenberger, David; Frishman, Dmitrij

2010-05-28

Virtually all currently available microRNA target site prediction algorithms require the presence of a (conserved) seed match to the 5' end of the microRNA. Recently however, it has been shown that this requirement might be too stringent, leading to a substantial number of missed target sites. We developed TargetSpy, a novel computational approach for predicting target sites regardless of the presence of a seed match. It is based on machine learning and automatic feature selection using a wide spectrum of compositional, structural, and base pairing features covering current biological knowledge. Our model does not rely on evolutionary conservation, which allows the detection of species-specific interactions and makes TargetSpy suitable for analyzing unconserved genomic sequences.In order to allow for an unbiased comparison of TargetSpy to other methods, we classified all algorithms into three groups: I) no seed match requirement, II) seed match requirement, and III) conserved seed match requirement. TargetSpy predictions for classes II and III are generated by appropriate postfiltering. On a human dataset revealing fold-change in protein production for five selected microRNAs our method shows superior performance in all classes. In Drosophila melanogaster not only our class II and III predictions are on par with other algorithms, but notably the class I (no-seed) predictions are just marginally less accurate. We estimate that TargetSpy predicts between 26 and 112 functional target sites without a seed match per microRNA that are missed by all other currently available algorithms. Only a few algorithms can predict target sites without demanding a seed match and TargetSpy demonstrates a substantial improvement in prediction accuracy in that class. Furthermore, when conservation and the presence of a seed match are required, the performance is comparable with state-of-the-art algorithms. TargetSpy was trained on mouse and performs well in human and drosophila, suggesting that it may be applicable to a broad range of species. Moreover, we have demonstrated that the application of machine learning techniques in combination with upcoming deep sequencing data results in a powerful microRNA target site prediction tool http://www.targetspy.org.

TargetSpy: a supervised machine learning approach for microRNA target prediction

PubMed Central

2010-01-01

Background Virtually all currently available microRNA target site prediction algorithms require the presence of a (conserved) seed match to the 5' end of the microRNA. Recently however, it has been shown that this requirement might be too stringent, leading to a substantial number of missed target sites. Results We developed TargetSpy, a novel computational approach for predicting target sites regardless of the presence of a seed match. It is based on machine learning and automatic feature selection using a wide spectrum of compositional, structural, and base pairing features covering current biological knowledge. Our model does not rely on evolutionary conservation, which allows the detection of species-specific interactions and makes TargetSpy suitable for analyzing unconserved genomic sequences. In order to allow for an unbiased comparison of TargetSpy to other methods, we classified all algorithms into three groups: I) no seed match requirement, II) seed match requirement, and III) conserved seed match requirement. TargetSpy predictions for classes II and III are generated by appropriate postfiltering. On a human dataset revealing fold-change in protein production for five selected microRNAs our method shows superior performance in all classes. In Drosophila melanogaster not only our class II and III predictions are on par with other algorithms, but notably the class I (no-seed) predictions are just marginally less accurate. We estimate that TargetSpy predicts between 26 and 112 functional target sites without a seed match per microRNA that are missed by all other currently available algorithms. Conclusion Only a few algorithms can predict target sites without demanding a seed match and TargetSpy demonstrates a substantial improvement in prediction accuracy in that class. Furthermore, when conservation and the presence of a seed match are required, the performance is comparable with state-of-the-art algorithms. TargetSpy was trained on mouse and performs well in human and drosophila, suggesting that it may be applicable to a broad range of species. Moreover, we have demonstrated that the application of machine learning techniques in combination with upcoming deep sequencing data results in a powerful microRNA target site prediction tool http://www.targetspy.org. PMID:20509939

The initiation and development of small peat-forming ecosystems adjacent to lakes in the north central Canadian low arctic during the Holocene

NASA Astrophysics Data System (ADS)

Camill, Philip; Umbanhowar, Charles E.; Geiss, Christoph; Edlund, Mark B.; Hobbs, Will O.; Dupont, Allison; Doyle-Capitman, Catherine; Ramos, Matthew

2017-07-01

Small peat-forming ecosystems in arctic landscapes may play a significant role in the regional biogeochemistry of high-latitude systems, yet they are understudied compared to arctic uplands and other major peat-forming regions of the North. We present a new data set of 25 radiocarbon-dated permafrost peat cores sampled around eight low arctic lake sites in northern Manitoba (Canada) to examine the timing of peat initiation and controls on peat accumulation throughout the Holocene. We used macrofossils and charcoal to characterize changes in the plant community and fire, and we explored potential impacts of these local factors, as well as regional climatic change, on rates of C accumulation and C stocks. Peat initiation was variable across and within sites, suggesting the influence of local topography, but 56% of the cores initiated after 3000 B.P. Most cores initiated and remained as drier bog hummock communities, with few vegetation transitions in this landscape. C accumulation was relatively slow and did not appear to be correlated with Holocene-scale climatic variability, but C stocks in this landscape were substantial (mean = 45.4 kg C m-2), potentially accounting for 13.2 Pg C in the Taiga Shield ecozone. To the extent that small peat-forming systems are underrepresented in peatland mapping, soil organic carbon (SOC) stocks may be underestimated in arctic regions. Mean fire severity appeared to be negatively correlated with C accumulation rates. Initiation and accumulation of soil C may respond to both regional and local factors, and substantial lowland soil C stocks have the potential for biogeochemical impacts on adjacent aquatic ecosystems.

Comprehensive monitoring for heterogeneous geographically distributed storage

DOE PAGES

Ratnikova, Natalia; Karavakis, E.; Lammel, S.; ...

2015-12-23

Storage capacity at CMS Tier-1 and Tier-2 sites reached over 100 Petabytes in 2014, and will be substantially increased during Run 2 data taking. The allocation of storage for the individual users analysis data, which is not accounted as a centrally managed storage space, will be increased to up to 40%. For comprehensive tracking and monitoring of the storage utilization across all participating sites, CMS developed a space monitoring system, which provides a central view of the geographically dispersed heterogeneous storage systems. The first prototype was deployed at pilot sites in summer 2014, and has been substantially reworked since then.more » In this study, we discuss the functionality and our experience of system deployment and operation on the full CMS scale.« less

Population changes in bats from central Arizona: 1972 and 1997

USGS Publications Warehouse

O'Shea, T.J.; Vaughan, T.A.

1999-01-01

Prompted by concern about declining bat populations in the southwestern United States, we surveyed for changes in populations between 1972 and 1997 at a study area in central Arizona. We duplicated earlier searches of ancient Indian dwellings and crevices in surrounding cliffs for diurnally roosting bats during the time of year when maternity colonies should have been present, and repeated mist-netting to capture bats in flight along the cliffs at night. Antrozous pallidus was gone. A maternity colony of Myotis velifer no longer existed. Tadarida brasiliensis was rare in 1997 compared to 1972; aggregations of Myotis yumanensis seen in 1972 were missing in 1997. Breeding Corynorhinus townsendii were found in 1997, but were unknown at this location in 1972. Small numbers of Eptesicus fuscus, Myotis californicus, and Pipistrellus hesperus occupied the site in both 1972 and 1997. Additionally, museum records show that most of the bats we documented at this site also were present in 1931. Surrounding habitat did not appear substantially different between 1972 and 1997, and a reconstruction of possible impacts from bat biologists did not suggest that researchers caused the local extinctions we document. The most obvious change over 25 years was a dramatic increase in recreational use of the area. We believe that disturbances associated with recreationists resulted in the observed population changes, primarily through roost abandonment.

Variations in Ti coordination and concentration in garnet in response to temperature, pressure and composition

NASA Astrophysics Data System (ADS)

Ackerson, M. R.; Tailby, N.; Watson, E. B.; Spear, F. S.

2013-12-01

Titanium concentrations in garnet vary over several orders of magnitude in natural systems-- from trace-element levels in continental metamorphic systems to several weight percent in garnets from mantle xenoliths. Broadly speaking the wide range of concentrations is due to crystallization from diverse environments. Understanding the crystallographic site and Ti-substitution mechanism in garnet is crucial to deciphering concentration trends and how these relate to the petrogenetic history. This study uses XANES spectroscopy to measure Ti coordination in natural and synthetic garnets known to crystallize over a wide range of conditions to investigate whether changes in Ti coordination and concentration correlate with changes T, P and bulk composition. Ti XANES spectroscopy utilizes shifts in the 1s-3d pre-edge feature, which shows systematic shifts in intensity and energy with coordination. Natural and synthetic garnets grown at >800 oC and >1 GPa incorporate Ti almost entirely on the octahedral site in garnet. It is possible that a small amount of Ti substitutes on the tetrahedral site in these garnets, but the concentration is too low to be observed in the spectra. The most feasible mechanism for octahedral substitution involves charge-balanced coupled substitution with an M2+ cation (where M2+=Mg, Fe, Ca, or Mn) resulting in a net loss of two Al for every Ti gained. Substitution of Al onto the tetrahedral site and Ti on the octahedral site is an other feasible mechanism, although the stoichiometric deficit of Al in experimental garnets suggests this mechanism could only account for a small percentage of Ti. Increases in Ti concentration correlate best with increasing Ca content in experimental garnets. Ti solubility also changes in response to T and P. These observations suggest that Ti incorporation on the octahedral site is dependent on the activities of Ti, Al and other M2+ cation system components. This helps to explain some of the differences in Ti concentration observed in garnets reported over a range of petrogenetic conditions. Garnets from sub-eclogite continental metamorphic systems-- in contrast to high P and T systems-- incorporate Ti onto both the octahedral and tetrahedral sites and display substantial coordination mixing (up to 75% tetrahedral Ti). This work is the first to directly observe significant Ti site mixing in garnet in response to the crystallization environment. Site mixing of Ti between octahedral and tetrahedral coordination reflects broad changes in T, P and composition. The behavior of Ti ions during garnet growth, which may show changes in both coordination and saturation, makes Ti-in-garnet a potentially powerful indicator of crystallization conditions.

Neural correlates of active controlled retrieval development: An exploratory ERP study.

PubMed

Simard, France; Cadoret, Geneviève

2018-07-01

Working memory is composed of different processes and encompasses not only the temporary storage of information but also its manipulation in order to perform complex cognitive activities. During childhood, one of these manipulation processes, namely active controlled retrieval, improves significantly between the age of 6 to 10, suggesting that the neuronal network supporting this function undergoes substantial maturational changes. The present study examined the neural activity of 14 healthy children and 14 adults while performing an active controlled retrieval task. Results showed differences in brain activity according to active controlled retrieval in a 300-500 ms window corresponding to the retrieval period. Active controlled retrieval was associated with a P3b-like potential in parietal sites for both children and adults. In fronto-central sites, children demonstrated a "N400 like" potential associated with active retrieval processing. These results are discussed in terms of maturational development. Copyright © 2018 Elsevier Inc. All rights reserved.

Vanadium K-edge X-ray absorption spectroscopy of bromoperoxidase from Ascophyllum nodosum

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arber, J.M.; de Boer, E.; Garner, C.D.

Bromoperoxidase from Ascophyllum nodusum was the first vanadium-containing enzyme to be isolated. X-ray absorption spectra have now been collected in order to investigate the coordination of vanadium in the native, native plus bromide, native plus hydrogen peroxide, and dithionite-reduced forms of the enzyme. The edge and X-ray absorption near-edge structures show that, in the four samples studied, it is only on reduction of the native enzyme that the metal site is substantially altered. In addition, these data are consistent with the presence of vanadium(IV) in the reduced enzyme and vanadium(V) in the other samples. Extended X-ray absorption fine structure datamore » confirm that there are structural changes at the metal site on reduction of the native enzyme, notably a lengthening of the average inner-shell distance, and the presence of terminal oxygen together with histidine and oxygen-donating residues.« less

Structural studies of Saccharomyces cerevesiae mitochondrial NADP-dependent isocitrate dehydrogenase in different enzymatic states reveal substantial conformational changes during the catalytic reaction.

PubMed

Peng, Yingjie; Zhong, Chen; Huang, Wei; Ding, Jianping

2008-09-01

Isocitrate dehydrogenases (IDHs) catalyze oxidative decarboxylation of isocitrate (ICT) into alpha-ketoglutarate (AKG). We report here the crystal structures of Saccharomyces cerevesiae mitochondrial NADP-IDH Idp1p in binary complexes with coenzyme NADP, or substrate ICT, or product AKG, and in a quaternary complex with NADPH, AKG, and Ca(2+), which represent different enzymatic states during the catalytic reaction. Analyses of these structures identify key residues involved in the binding of these ligands. Comparisons among these structures and with the previously reported structures of other NADP-IDHs reveal that eukaryotic NADP-IDHs undergo substantial conformational changes during the catalytic reaction. Binding or release of the ligands can cause significant conformational changes of the structural elements composing the active site, leading to rotation of the large domain relative to the small and clasp domains along two hinge regions (residues 118-124 and residues 284-287) while maintaining the integrity of its secondary structural elements, and thus, formation of at least three distinct overall conformations. Specifically, the enzyme adopts an open conformation when bound to NADP, a quasi-closed conformation when bound to ICT or AKG, and a fully closed conformation when bound to NADP, ICT, and Ca(2+) in the pseudo-Michaelis complex or with NADPH, AKG, and Ca(2+) in the product state. The conformational changes of eukaryotic NADP-IDHs are quite different from those of Escherichia coli NADP-IDH, for which significant conformational changes are observed only between two forms of the apo enzyme, suggesting that the catalytic mechanism of eukaryotic NADP-IDHs is more complex than that of EcIDH, and involves more fine-tuned conformational changes.

A MS, SEM-EDX and XRD study of Ti or Cu-doped zinc ferrites as regenerable sorbents for hot coal gas desulfurization

NASA Astrophysics Data System (ADS)

Ahmed, M. A.; García, E.; Alonso, L.; Palacios, J. M.

2000-02-01

Kinetic studies in thermobalance carried out by several authors previously have shown that small concentrations of TiO 2 or CuO can increase substantially the overall sulfidation rate of zinc ferrites, as regenerable sorbents for hot coal gas desulfurization. These oxides modify the textural properties of both the fresh or regenerated and the sulfided sorbent, modifying consequently the sulfidation rate because it is a partially diffusion-controlled process. However, by using grain models it is shown that most of the observed changes are due to changes in the intrinsic reactivity of the sorbent. Detailed studies of characterization in previous papers using different techniques have failed in revealing differential chemical changes that could be associated with a different behavior. In fact, the only significant changes observed in these studies were an apparent disappearance in fresh sorbents calcined at very high temperatures of the Raman effect, and a slight shift of the XPS binding energy of Fe levels, indicating a probable site migration and/or a change of the oxidation state. These characterization results, however, were not completely conclusive and additional efforts should be undertaken. In this paper more sensitive techniques such as Mössbauer spectroscopy (MS), powder X-ray diffraction (XRD) and scanning electron microscopy (SEM-EDX), have been used for the characterization of fresh, regenerated and sulfided sorbents. The study shows that the addition of TiO 2 or CuO induce substantial structural changes in zinc ferrites that can explain their apparent enhancing effect on the overall sulfidation reactivity. Additionally, this effect is decreased as the number of sulfidation-regeneration cycles increases, probably explaining the performance decay exhibited by these sorbents in multicycle tests in a fixed bed reactor.

Changes in the photochemical environment of the temperate North Pacific troposphere in response to increased Asian emissions

NASA Astrophysics Data System (ADS)

Parrish, D. D.; Dunlea, E. J.; Atlas, E. L.; Schauffler, S.; Donnelly, S.; Stroud, V.; Goldstein, A. H.; Millet, D. B.; McKay, M.; Jaffe, D. A.; Price, H. U.; Hess, P. G.; Flocke, F.; Roberts, J. M.

2004-12-01

Measurements during the Intercontinental Transport and Chemical Transformation 2002 (ITCT 2K2) field study characterized the springtime, eastern Pacific ozone distribution at two ground sites, from the National Oceanic and Atmospheric Administration WP-3D aircraft, and from a light aircraft operated by the University of Washington. D. Jaffe and colleagues compared the 2002 ozone distribution with measurements made in the region over the two previous decades and show that average ozone levels over the eastern midlatitude Pacific have systematically increased by ˜10 ppbv in the last two decades. Here we provide substantial evidence that a marked change in the photochemical environment in the springtime troposphere of the North Pacific is responsible for this increased O3. This change is evidenced in the eastern North Pacific ITCT 2K2 study region by (1) larger increases in the minimum observed ozone levels compared to more modest increases in the maximum levels, (2) increased peroxyacetyl nitrate (PAN) levels that parallel trends in NOx emissions, and (3) decreased efficiency of photochemical O3 destruction, i.e., less negative O3 photochemical tendency (or net rate of O3 photochemical production; P(O3)). This changed photochemical environment is hypothesized to be due to anthropogenic emissions from Asia, which are believed to have substantially increased over the two decades preceding the study. We propose that their influence has changed the springtime Pacific tropospheric photochemistry from predominately ozone destroying to more nearly ozone producing. However, chemical transport model calculations indicate the possible influence of a confounding factor; unusual transport of tropical air to the western North Pacific during one early field study may have played a role in this apparent change in the photochemistry.

Structural studies of Saccharomyces cerevesiae mitochondrial NADP-dependent isocitrate dehydrogenase in different enzymatic states reveal substantial conformational changes during the catalytic reaction

PubMed Central

Peng, Yingjie; Zhong, Chen; Huang, Wei; Ding, Jianping

2008-01-01

Isocitrate dehydrogenases (IDHs) catalyze oxidative decarboxylation of isocitrate (ICT) into α-ketoglutarate (AKG). We report here the crystal structures of Saccharomyces cerevesiae mitochondrial NADP-IDH Idp1p in binary complexes with coenzyme NADP, or substrate ICT, or product AKG, and in a quaternary complex with NADPH, AKG, and Ca2+, which represent different enzymatic states during the catalytic reaction. Analyses of these structures identify key residues involved in the binding of these ligands. Comparisons among these structures and with the previously reported structures of other NADP-IDHs reveal that eukaryotic NADP-IDHs undergo substantial conformational changes during the catalytic reaction. Binding or release of the ligands can cause significant conformational changes of the structural elements composing the active site, leading to rotation of the large domain relative to the small and clasp domains along two hinge regions (residues 118–124 and residues 284–287) while maintaining the integrity of its secondary structural elements, and thus, formation of at least three distinct overall conformations. Specifically, the enzyme adopts an open conformation when bound to NADP, a quasi-closed conformation when bound to ICT or AKG, and a fully closed conformation when bound to NADP, ICT, and Ca2+ in the pseudo-Michaelis complex or with NADPH, AKG, and Ca2+ in the product state. The conformational changes of eukaryotic NADP-IDHs are quite different from those of Escherichia coli NADP-IDH, for which significant conformational changes are observed only between two forms of the apo enzyme, suggesting that the catalytic mechanism of eukaryotic NADP-IDHs is more complex than that of EcIDH, and involves more fine-tuned conformational changes. PMID:18552125

Effects of low-level radioactive-waste disposal on water chemistry in the unsaturated zone at a site near Sheffield, Illinois, 1982-84

USGS Publications Warehouse

Peters, C.A.; Striegl, Robert G.; Mills, P.C.; Healy, R.W.

1992-01-01

A 1982-84 field study defined the chemistry of water collected from the unsaturated zone at a low-level radioactive-waste disposal site near Sheffield, Bureau County, Ill. Chemical data were evaluated to determine the principal, naturally occurring geochemical reactions in the unsaturated zone and to evaluate waste-induced effects on pore-water chemistry. Samples of precipitation, unsaturated-zone pore water, and saturated-zone water were analyzed for specific conductance, pH, alkalinity, major cations and anions, dissolved organic carbon, gross alpha and beta radiation, and tritium. Little change in concentration of most major constituents in the unsaturated-zone water was observed with respect to depth or distance from disposal trenches. Tritium and dissolved organic carbon concentrations were, however, dependent on proximity to trenches. The primary reactions, both on-site and off-site, were carbonate and clay dissolution, cation exchange, and the oxidation of pyrite. The major difference between on-site and off-site inorganic water chemistry resulted from the removal of the Roxana Silt and the Radnor Till Member of the Glasford Formation from on-site. Off-site, the Roxana Silt contributed substantial quantities of sodium to solution from montmorillonite dissolution and associated cation-exchange reactions. The Radnor Till Member provided exchange surfaces for magnesium. Precipitation at the site had an ionic composition of calcium zinc sulfate and an average pH of 4.6. Within 0.3 meter of the land surface, infiltrating rainwater or snowmelt changed to an ionic composition of calcium sulfate off-site and calcium bicarbonate on-site and had an average pH of 7.9; below that depth, pH averaged 7.5 and the ionic composition generally was calcium magnesium bicarbonate. Alkalinity and specific conductance differed primarily according to composition of geologic materials. Tritium concentrations ranged from 0.2 (detection limit) to 1,380 nanocuries per liter. The methods of constructing, installing, and sampling with lysimeters were evaluated to ensure data reliability. These evaluations indicate that, with respect to most constituents, the samples retrieved from the lysimeters accurately represented pore-water chemistry.

Effects of low-level radioactive-waste disposal on water chemistry in the unsaturated zone at a site near Sheffield, Illinois, 1982-84

USGS Publications Warehouse

Peters, C.A.; Striegl, Robert G.; Mills, P.C.; Healy, R.W.

1992-01-01

A 1982-84 field study defined the chemistry of water collected from the unsaturated zone at a low-level radioactive-waste disposal site near Sheffield, Bureau County, Illinois. Chemical data were evaluated to determine the principal naturally occurring geochemical reactions in the unsaturated zone and to evaluate waste-induced effects on pore-water chemistry. Samples of precipitation, unsaturated-zone pore water, and saturated-zone water were analyzed for specific conductance, pH, alkalinity, major cations and anions, dissolved organic carbon, gross alpha and beta radiation, and tritium. Little change in concentration of most major constituents in the unsaturated-zone water was observed with respect to depth or distance from disposal trenches. Tritium and dissolved organic carbon concentrations were, however, dependent on proximity to trenches. The primary reactions, both on- site and off-site, were carbonate and clay dissolution, cation exchange, and the oxidation of pyrite. The major difference between on-site and off-site inorganic water chemistry resulted from the removal of the Roxana Silt and the Radnor Till Member of the Glasford Formation from on-site. Off-site, the Roxana Silt contributed substantial quantities of sodium to solution from montmorillonite dissolution and associated cation-exchange reactions. The Radnor Till Member provided exchange surfaces for magnesium. Precipitation at the site had an ionic composition of calcium zinc sulfate and an average pH of 4.6. Within 0.3 meter of the land surface, infiltrating rain water or snowmelt changed to an ionic canposition of calcium sulfate off-site and calcium bicarbonate on-site and had an average pH of 7.9; below that depth, pH averaged 7.5 and the ionic composition generally was calcium magnesium bicarbonate. Alkalinity and specific conductance differed primarily according to composition of geologic materials. Tritium concentrations ranged from 0.2 (detection limit) to 1,380 nanocuries per liter. The methods of constructing, installing, and sampling with lysimeters were evaluated to ensure data reliability. These evaluations indicate that, with respect to most constituents, the samples retrieved from the lysimeters accurately represented pore-water chemistry.

A newly developed dispersal metric indicates the succession of benthic invertebrates in restored rivers.

PubMed

Li, Fengqing; Sundermann, Andrea; Stoll, Stefan; Haase, Peter

2016-11-01

Dispersal capacity plays a fundamental role in the riverine benthic invertebrate colonization of new habitats that emerges following flash floods or restoration. However, an appropriate measure of dispersal capacity for benthic invertebrates is still lacking. The dispersal of benthic invertebrates occurs mainly during the aquatic (larval) and aerial (adult) life stages, and the dispersal of each stage can be further subdivided into active and passive modes. Based on these four possible dispersal modes, we first developed a metric (which is very similar to the well-known and widely used saprobic index) to estimate the dispersal capacity for 802 benthic invertebrate taxa by incorporating a weight for each mode. Second, we tested this metric using benthic invertebrate community data from a) 23 large restored river sites with substantial improvements of river bottom habitats dating back 1 to 10years, b) 23 unrestored sites very close to the restored sites, and c) 298 adjacent surrounding sites (mean±standard deviation: 13.0±9.5 per site) within a distance of up to 5km for each restored site in the low mountain and lowland areas of Germany. We hypothesize that our metric will reflect the temporal succession process of benthic invertebrate communities colonizing the restored sites, whereas no temporal changes are expected in the unrestored and surrounding sites. By applying our metric to these three river treatment categories, we found that the average dispersal capacity of benthic invertebrate communities in the restored sites significantly decreased in the early years following restoration, whereas there were no changes in either the unrestored or the surrounding sites. After all taxa had been divided into quartiles representing weak to strong dispersers, this pattern became even more obvious; strong dispersers colonized the restored sites during the first year after restoration and then significantly decreased over time, whereas weak dispersers continued to increase. The successful application of our metric to river restoration might be promising in further applications of this metric, for example, in analyzing metacommunity structure or community's recovery from extreme events such as floods, droughts or catastrophic pollution episodes. Copyright © 2016 Elsevier B.V. All rights reserved.

Geoelectrical monitoring of simulated subsurface leakage to support high-hazard nuclear decommissioning at the Sellafield Site, UK.

PubMed

Kuras, Oliver; Wilkinson, Paul B; Meldrum, Philip I; Oxby, Lucy S; Uhlemann, Sebastian; Chambers, Jonathan E; Binley, Andrew; Graham, James; Smith, Nicholas T; Atherton, Nick

2016-10-01

A full-scale field experiment applying 4D (3D time-lapse) cross-borehole Electrical Resistivity Tomography (ERT) to the monitoring of simulated subsurface leakage was undertaken at a legacy nuclear waste silo at the Sellafield Site, UK. The experiment constituted the first application of geoelectrical monitoring in support of decommissioning work at a UK nuclear licensed site. Images of resistivity changes occurring since a baseline date prior to the simulated leaks revealed likely preferential pathways of silo liquor simulant flow in the vadose zone and upper groundwater system. Geophysical evidence was found to be compatible with historic contamination detected in permeable facies in sediment cores retrieved from the ERT boreholes. Results indicate that laterally discontinuous till units forming localized hydraulic barriers substantially affect flow patterns and contaminant transport in the shallow subsurface at Sellafield. We conclude that only geophysical imaging of the kind presented here has the potential to provide the detailed spatial and temporal information at the (sub-)meter scale needed to reduce the uncertainty in models of subsurface processes at nuclear sites. Copyright © 2016 British Geological Survey, NERC. Published by Elsevier B.V. All rights reserved.

A spin transition mechanism for cooperative adsorption in metal-organic frameworks

NASA Astrophysics Data System (ADS)

Reed, Douglas A.; Keitz, Benjamin K.; Oktawiec, Julia; Mason, Jarad A.; Runčevski, Tomče; Xiao, Dianne J.; Darago, Lucy E.; Crocellà, Valentina; Bordiga, Silvia; Long, Jeffrey R.

2017-10-01

Cooperative binding, whereby an initial binding event facilitates the uptake of additional substrate molecules, is common in biological systems such as haemoglobin. It was recently shown that porous solids that exhibit cooperative binding have substantial energetic benefits over traditional adsorbents, but few guidelines currently exist for the design of such materials. In principle, metal-organic frameworks that contain coordinatively unsaturated metal centres could act as both selective and cooperative adsorbents if guest binding at one site were to trigger an electronic transformation that subsequently altered the binding properties at neighbouring metal sites. Here we illustrate this concept through the selective adsorption of carbon monoxide (CO) in a series of metal-organic frameworks featuring coordinatively unsaturated iron(II) sites. Functioning via a mechanism by which neighbouring iron(II) sites undergo a spin-state transition above a threshold CO pressure, these materials exhibit large CO separation capacities with only small changes in temperature. The very low regeneration energies that result may enable more efficient Fischer-Tropsch conversions and extraction of CO from industrial waste feeds, which currently underutilize this versatile carbon synthon. The electronic basis for the cooperative adsorption demonstrated here could provide a general strategy for designing efficient and selective adsorbents suitable for various separations.

Probabilistic Assessment of Above Zone Pressure Predictions at a Geologic Carbon Storage Site

PubMed Central

Namhata, Argha; Oladyshkin, Sergey; Dilmore, Robert M.; Zhang, Liwei; Nakles, David V.

2016-01-01

Carbon dioxide (CO2) storage into geological formations is regarded as an important mitigation strategy for anthropogenic CO2 emissions to the atmosphere. This study first simulates the leakage of CO2 and brine from a storage reservoir through the caprock. Then, we estimate the resulting pressure changes at the zone overlying the caprock also known as Above Zone Monitoring Interval (AZMI). A data-driven approach of arbitrary Polynomial Chaos (aPC) Expansion is then used to quantify the uncertainty in the above zone pressure prediction based on the uncertainties in different geologic parameters. Finally, a global sensitivity analysis is performed with Sobol indices based on the aPC technique to determine the relative importance of different parameters on pressure prediction. The results indicate that there can be uncertainty in pressure prediction locally around the leakage zones. The degree of such uncertainty in prediction depends on the quality of site specific information available for analysis. The scientific results from this study provide substantial insight that there is a need for site-specific data for efficient predictions of risks associated with storage activities. The presented approach can provide a basis of optimized pressure based monitoring network design at carbon storage sites. PMID:27996043

Probabilistic Assessment of Above Zone Pressure Predictions at a Geologic Carbon Storage Site

NASA Astrophysics Data System (ADS)

Namhata, Argha; Oladyshkin, Sergey; Dilmore, Robert M.; Zhang, Liwei; Nakles, David V.

2016-12-01

Carbon dioxide (CO2) storage into geological formations is regarded as an important mitigation strategy for anthropogenic CO2 emissions to the atmosphere. This study first simulates the leakage of CO2 and brine from a storage reservoir through the caprock. Then, we estimate the resulting pressure changes at the zone overlying the caprock also known as Above Zone Monitoring Interval (AZMI). A data-driven approach of arbitrary Polynomial Chaos (aPC) Expansion is then used to quantify the uncertainty in the above zone pressure prediction based on the uncertainties in different geologic parameters. Finally, a global sensitivity analysis is performed with Sobol indices based on the aPC technique to determine the relative importance of different parameters on pressure prediction. The results indicate that there can be uncertainty in pressure prediction locally around the leakage zones. The degree of such uncertainty in prediction depends on the quality of site specific information available for analysis. The scientific results from this study provide substantial insight that there is a need for site-specific data for efficient predictions of risks associated with storage activities. The presented approach can provide a basis of optimized pressure based monitoring network design at carbon storage sites.

Depth Effects on the Decomposition Dynamics of Plant-derived C at Diverse Sites

NASA Astrophysics Data System (ADS)

Gregorich, E.; Ellert, B.; Janzen, H.; Beare, M.; Helgason, B. L.; Curtin, D.

2017-12-01

Decay of plant residues is tied to many ecosystem functions and affects atmospheric CO2, plant-available nutrients, microbial diversity, soil organic matter quality, among others. The rate of decay, in turn, is governed by soil type and management, location in the soil profile, and environmental variables, some of which may be changing in coming decades. Our objective in this study was to elucidate the decomposition dynamics of plant-derived C and N at different soil depths. To characterize the importance of these variables across a broad scale, we established a long-term study at two sites in Canada and one site in New Zealand. At each site, labelled barley straw (13C = 10.2 atom%,C = 37.9%; N = 0.95%; C:N = 40) was installed at 3 depths (5-10, 20-25 and 40-45 cm). Soil temperature was logged at each depth. Samples were collected at different times over 5-6 years after application of the residues. Results showed that substantial decay occurred at all depths within a relatively short time (< 1 year). Decay was greatest at the warmest site and depth affected the concentration of viable microbes. However, depth had no effect on residue decay after about 5 years.

Comparative Analysis of Whey N-Glycoproteins in Human Colostrum and Mature Milk Using Quantitative Glycoproteomics.

PubMed

Cao, Xueyan; Song, Dahe; Yang, Mei; Yang, Ning; Ye, Qing; Tao, Dongbing; Liu, Biao; Wu, Rina; Yue, Xiqing

2017-11-29

Glycosylation is a ubiquitous post-translational protein modification that plays a substantial role in various processes. However, whey glycoproteins in human milk have not been completely profiled. Herein, we used quantitative glycoproteomics to quantify whey N-glycosylation sites and their alteration in human milk during lactation; 110 N-glycosylation sites on 63 proteins and 91 N-glycosylation sites on 53 proteins were quantified in colostrum and mature milk whey, respectively. Among these, 68 glycosylation sites on 38 proteins were differentially expressed in human colostrum and mature milk whey. These differentially expressed N-glycoproteins were highly enriched in "localization", "extracellular region part", and "modified amino acid binding" according to gene ontology annotation and mainly involved in complement and coagulation cascades pathway. These results shed light on the glycosylation sites, composition and biological functions of whey N-glycoproteins in human colostrum and mature milk, and provide substantial insight into the role of protein glycosylation during infant development.

Land use change and human health

NASA Astrophysics Data System (ADS)

Patz, Jonathan A.; Norris, Douglas E.

Disease emergence events have been documented following several types of land use change. This chapter reviews several health-relevant land use changes recognized today, including: 1) urbanization and urban sprawl; 2) water projects and agricultural development; 3) road construction and deforestation in the tropics; and 4) regeneration of temperate forests. Because habitat or climatic change substantially affects intermediate invertebrate hosts involved in many prevalent diseases, this chapter provides a basic description of vector-borne disease biology as a foundation for analyzing the effects of land use change. Urban sprawl poses health challenges stemming from heat waves exacerbated by the "urban heat island" effect, as well as from water contamination due to expanses of impervious road and concrete surfaces. Dams, irrigation and agricultural development have long been associated with diseases such as schistosomiasis and filariasis. Better management methods are required to address the trade-offs between expanded food production and altered habitats promoting deadly diseases. Deforestation can increase the nature and number of breeding sites for vector-borne diseases, such as malaria and onchocerciasis. Human host and disease vector interaction further increases risk, as can a change in arthropod-vector species composition.

Sensitivity and Tolerance of Riparian Arthropod Communities to Altered Water Resources along a Drying River

PubMed Central

McCluney, Kevin E.; Sabo, John L.

2014-01-01

Background Rivers around the world are drying with increasing frequency, but little is known about effects on terrestrial animal communities. Previous research along the San Pedro River in southeastern AZ, USA, suggests that changes in the availability of water resources associated with river drying lead to changes in predator abundance, community composition, diversity, and abundance of particular taxa of arthropods, but these observations have not yet been tested manipulatively. Methods and Results In this study, we constructed artificial pools in the stream bed adjacent to a drying section of the San Pedro River and maintained them as the river dried. We compared pitfall trapped arthropods near artificial pools to adjacent control sites where surface waters temporarily dried. Assemblage composition changed differentially at multiple taxonomic levels, resulting in different assemblages at pools than at control sites, with multiple taxa and richness of carabid beetle genera increasing at pools but not at controls that dried. On the other hand, predator biomass, particularly wolf spiders, and diversity of orders and families were consistently higher at control sites that dried. These results suggest an important role for colonization dynamics of pools, as well as the ability of certain taxa, particularly burrowing wolf spiders, to withstand periods of temporary drying. Conclusions Overall, we found some agreement between this manipulative study of water resources and a previous analysis of river drying that showed shifts in composition, changes in diversity, and declines in abundance of certain taxa (e.g. carabid beetles). However, colonization dynamics of pools, as well as compensatory strategies of predatory wolf spiders seem to have led to patterns that do not match previous research, with control sites maintaining high diversity, despite drying. Tolerance of river drying by some species may allow persistence of substantial diversity in the face of short-term drying. The long-term effects of drying remain to be investigated. PMID:25295874

Sensitivity and tolerance of Riparian arthropod communities to altered water resources along a drying river.

PubMed

McCluney, Kevin E; Sabo, John L

2014-01-01

Rivers around the world are drying with increasing frequency, but little is known about effects on terrestrial animal communities. Previous research along the San Pedro River in southeastern AZ, USA, suggests that changes in the availability of water resources associated with river drying lead to changes in predator abundance, community composition, diversity, and abundance of particular taxa of arthropods, but these observations have not yet been tested manipulatively. In this study, we constructed artificial pools in the stream bed adjacent to a drying section of the San Pedro River and maintained them as the river dried. We compared pitfall trapped arthropods near artificial pools to adjacent control sites where surface waters temporarily dried. Assemblage composition changed differentially at multiple taxonomic levels, resulting in different assemblages at pools than at control sites, with multiple taxa and richness of carabid beetle genera increasing at pools but not at controls that dried. On the other hand, predator biomass, particularly wolf spiders, and diversity of orders and families were consistently higher at control sites that dried. These results suggest an important role for colonization dynamics of pools, as well as the ability of certain taxa, particularly burrowing wolf spiders, to withstand periods of temporary drying. Overall, we found some agreement between this manipulative study of water resources and a previous analysis of river drying that showed shifts in composition, changes in diversity, and declines in abundance of certain taxa (e.g. carabid beetles). However, colonization dynamics of pools, as well as compensatory strategies of predatory wolf spiders seem to have led to patterns that do not match previous research, with control sites maintaining high diversity, despite drying. Tolerance of river drying by some species may allow persistence of substantial diversity in the face of short-term drying. The long-term effects of drying remain to be investigated.

Responses of woody species to spatial and temporal ground water changes in coastal sand dune systems

NASA Astrophysics Data System (ADS)

Máguas, C.; Rascher, K. G.; Martins-Loução, A.; Carvalho, P.; Pinho, P.; Ramos, M.; Correia, O.; Werner, C.

2011-12-01

In spite of the relative importance of groundwater in costal dune systems, studies concerning the responses of vegetation to ground water (GW) availability variations, particularly in Mediterranean regions, are scarce. Thus, the main purpose of this study is to compare the responses of co-occurring species possessing different functional traits, to changes in GW levels (i.e. the lowering of GW levels) in a sand dune ecosystem. For that, five sites were established within a 1 km2 area in a meso-mediterranean sand dune ecosystem dominated by a Pinus pinaster forest. Due to natural topographic variability and anthropogenic GW exploitation, substantial variability in depth to GW between sites was found. Under these conditions it was possible to identify the degree of usage and dependence on GW of different plant species (two deep-rooted trees, a drought adapted shrub, a phreatophyte and a non-native woody invader) and how GW dependence varied seasonally and between the heterogeneous sites. Results indicated that the plant species had differential responses to changes in GW depth according to specific functional traits (i.e. rooting depth, leaf morphology, and water use strategy). Species comparison revealed that variability in pre-dawn water potential (Ψpre) and bulk leaf δ13C was related to site differences in GW use in the deep-rooted (Pinus pinaster, Myrica faya) and phreatophyte (Salix repens) species. However, such variation was more evident during spring than during summer drought. The exotic invader, Acacia longifolia, which does not possess a very deep root system, presented the largest seasonal variability in Ψpre and bulk leaf δ13C. In contrast, the response of Corema album, an endemic understory drought-adapted shrub, seemed to be independent of water availability across seasons and sites. Thus, the susceptibility to lowering of GW due to anthropogenic exploitation, in plant species from sand dunes, is variable, being particularly relevant for deep rooted species and phreatophytes, which seem to depend heavily on access to GW.

WE-G-BRA-05: IROC Houston On-Site Audits and Parameters That Affect Performance

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kry, S; Dromgoole, L; Alvarez, P

Purpose: To highlight the IROC Houston on-site dosimetry audit program, and to investigate the impact of clinical conditions on the frequency of errors/recommendations noted by IROC Houston. Methods: The results of IROC Houston on-site audits from 2000-present were abstracted and compared to clinical parameters, this included 409 institutions and 1020 linacs. In particular, we investigated the frequency of recommendations versus year, and the impact of repeat visits on the number of recommendations. We also investigated the impact on the number of recommendations of several clinical parameters: the number and age of the linacs, the linac/TPS combination, and the scope ofmore » the QA program. Results: The number of recommendations per institution (3.1 average) has shown decline between 2000 and present, although the number of recommendations per machine (0.89) has not changed. Previous IROC Houston site visits did not Result in fewer recommendations on a repeat visit, but IROC Houston tests have changed substantially during the last 15 years as radiotherapy technology has changed. There was no impact on the number of recommendations based on the number of machines at the institution or the age of a given machine. The fewest recommendations were observed for Varian-Eclipse combinations (0.71 recs/machine), while Elekta- Pinnacle combinations yielded the most (1.62 recs/machine). Finally, in the TG-142 era (post-2010), those institutions that had a QA recommendation (n=77) had significantly more other recommendations (1.83 per institution) than those that had no QA rec (n=12, 1.33 per institution). Conclusion: Establishing and maintaining a successful radiotherapy program is challenging and areas of improvement can routinely be identified. Clinical conditions such as linac-TPS combinations and the establishment of a good QA program impact the frequency of errors/deficiencies identified by IROC Houston during their on-site review process.« less

75 FR 11916 - Chrysler Transportation LLC, a Subsidiary of Chrysler LLC, Including On-Site Leased Workers from...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-12

... Chrysler manufacturing facilities, a substantial portion of which are shipped to an affiliated plant where... Caravan Knight Facilities Management LLC were employed on-site at the Detroit, Michigan location of... Knight Facilities Management, LLC, working on-site at the Detroit, Michigan location of Chrysler...

2 Internet-Savvy Students Help Track Down the Hacker of an NCAA Web Site.

ERIC Educational Resources Information Center

Wanat, Thomas

1997-01-01

A Duke University (North Carolina) student witnessing vandalism to the National Collegiate Athletic Association's (NCAA) World Wide Web site and a University of Massachusetts, Amherst student, both studying computer science, have contributed substantially to the identification of a computer hacker destroying the NCAA site. The students' rapid…

Analysis of water levels in the Frenchman Flat area, Nevada Test Site

USGS Publications Warehouse

Bright, D.J.; Watkins, S.A.; Lisle, B.A.

2001-01-01

Analysis of water levels in 21 wells in the Frenchman Flat area, Nevada Test Site, provides information on the accuracy of hydraulic-head calculations, temporal water-level trends, and potential causes of water-level fluctuations. Accurate hydraulic heads are particularly important in Frenchman Flat where the hydraulic gradients are relatively flat (less than 1 foot per mile) in the alluvial aquifer. Temporal water-level trends with magnitudes near or exceeding the regional hydraulic gradient may have a substantial effect on ground-water flow directions. Water-level measurements can be adjusted for the effects of barometric pressure, formation water density (from water-temperature measurements), borehole deviation, and land-surface altitude in selected wells in the Frenchman Flat area. Water levels in one well were adjusted for the effect of density; this adjustment was significantly greater (about 17 feet) than the adjustment of water levels for barometric pressure, borehole deviation, or land-surface altitude (less than about 4 feet). Water-level measurements from five wells exhibited trends that were statistically and hydrologically significant. Statistically significant water-level trends were observed for three wells completed in the alluvial aquifer (WW-5a, UE-5n, and PW-3), for one well completed in the carbonate aquifer (SM-23), and for one well completed in the quartzite confining unit (Army-6a). Potential causes of water-level fluctuations in wells in the Frenchman Flat area include changes in atmospheric conditions (precipitation and barometric pressure), Earth tides, seismic activity, past underground nuclear testing, and nearby pumping. Periodic water-level measurements in some wells completed in the carbonate aquifer indicate cyclic-type water-level fluctuations that generally correlate with longer term changes (more than 5 years) in precipitation. Ground-water pumping fromthe alluvial aquifer at well WW-5c and pumping and discharge from well RNM-2s appear to cause water-level fluctuations in nearby observation wells. The remaining known sources of water-level fluctuations do not appear to substantially affect water-level changes (seismic activity and underground nuclear testing) or do not affect changes over a period of more than 1 year (barometric pressure and Earth tides) in wells in the Frenchman Flat area.

BCI Use and Its Relation to Adaptation in Cortical Networks.

PubMed

Casimo, Kaitlyn; Weaver, Kurt E; Wander, Jeremiah; Ojemann, Jeffrey G

2017-10-01

Brain-computer interfaces (BCIs) carry great potential in the treatment of motor impairments. As a new motor output, BCIs interface with the native motor system, but acquisition of BCI proficiency requires a degree of learning to integrate this new function. In this review, we discuss how BCI designs often take advantage of the brain's motor system infrastructure as sources of command signals. We highlight a growing body of literature examining how this approach leads to changes in activity across cortex, including beyond motor regions, as a result of learning the new skill of BCI control. We discuss the previous research identifying patterns of neural activity associated with BCI skill acquisition and use that closely resembles those associated with learning traditional native motor tasks. We then discuss recent work in animals probing changes in connectivity of the BCI control site, which were linked to BCI skill acquisition, and use this as a foundation for our original work in humans. We present our novel work showing changes in resting state connectivity across cortex following the BCI learning process. We find substantial, heterogeneous changes in connectivity across regions and frequencies, including interactions that do not involve the BCI control site. We conclude from our review and original work that BCI skill acquisition may potentially lead to significant changes in evoked and resting state connectivity across multiple cortical regions. We recommend that future studies of BCIs look beyond motor regions to fully describe the cortical networks involved and long-term adaptations resulting from BCI skill acquisition.

Effects of Disturbances on Vegetation Composition and Permafrost Thaw in Boreal Forests and Tundra Ecosystems of the Siberian Arctic

NASA Astrophysics Data System (ADS)

Ramos, E.; Alexander, H. D.; Natali, S.

2014-12-01

In Arctic ecosystems, climate-driven changes to the thermal regime of permafrost soils have the potential to create surface disturbances that influence vegetation dynamics and underlying soil properties. Disturbance-mediated changes in vegetation are important because vegetation and the accumulation of soil organic matter drive ecosystem carbon (C) dynamics and contribute to the insulation of soils and protection of permafrost from thaw. We examined the effect of two disturbance types—thermokarsts and frost boils—to determine disturbance effects on the vegetation community and soil properties in northeast Siberia. In summer 2014, we measured vegetation cover, soil moisture, soil temperature, and thaw depth in two thermokarst sites within boreal forests, two frost boil sites in tundra, and in adjacent undisturbed sites within both ecosystems. Both thermokarst and frost boils resulted in decreased vegetation cover and greater exposure of mineral soils (10-40% bare soils vs. 0% in undisturbed), and consequently, 2-3 times higher soil temperature and deeper thaw depth. Compared to undisturbed areas, soil moisture was 3-4 times higher in thermokarst areas but 1.2-2 times lower in frost boil areas, which reflected differences in microtopography between these two disturbance types. In both thermokarst and frost boil disturbed areas, deciduous and evergreen shrubs covered only 5 and 10%, respectively, compared to approximately 10 and 20%, respectively, in undisturbed areas. In general, graminoids were substantially more abundant (2-20 times) in disturbed areas than in those undisturbed. These results highlight important linkages between disturbances, vegetation communities, and permafrost soils, and contribute to our understanding of how changes in arctic vegetation dynamics as direct and/or indirect consequences of climate change have the potential to impact permafrost C pools.

Sources of Site Differences in the Efficacy of a Multisite Clinical Trial: The Treatment of SSRI-Resistant Depression in Adolescents

ERIC Educational Resources Information Center

Spirito, Anthony; Abebe, Kaleab Z.; Iyengar, Satish; Brent, David; Vitiello, Benedetto; Clarke, Gregory; Wagner, Karen Dineen; Asarnow, Joan; Emslie, Graham; Keller, Martin

2009-01-01

Site differences in treatment outcomes are not often highlighted when the results of multisite randomized clinical trials (MRCTs) are reported. The primary analyses of a 6-site MRCT, the Treatment of SSRI-Resistant Depression in Adolescents (TORDIA) study, showed substantial variation by site in the performance of a medication-only condition and a…

Effects of Invasive-Plant Management on Nitrogen-Removal Services in Freshwater Tidal Marshes.

PubMed

Alldred, Mary; Baines, Stephen B; Findlay, Stuart

2016-01-01

Establishing relationships between biodiversity and ecosystem function is an ongoing endeavor in contemporary ecosystem and community ecology, with important practical implications for conservation and the maintenance of ecosystem services. Removal of invasive plant species to conserve native diversity is a common management objective in many ecosystems, including wetlands. However, substantial changes in plant community composition have the potential to alter sediment characteristics and ecosystem services, including permanent removal of nitrogen from these systems via microbial denitrification. A balanced assessment of costs associated with keeping and removing invasive plants is needed to manage simultaneously for biodiversity and pollution targets. We monitored small-scale removals of Phragmites australis over four years to determine their effects on potential denitrification rates relative to three untreated Phragmites sites and adjacent sites dominated by native Typha angustifolia. Sediment ammonium increased following the removal of vegetation from treated sites, likely as a result of decreases in both plant uptake and nitrification. Denitrification potentials were lower in removal sites relative to untreated Phragmites sites, a pattern that persisted at least two years following removal as native plant species began to re-colonize treated sites. These results suggest the potential for a trade-off between invasive-plant management and nitrogen-removal services. A balanced assessment of costs associated with keeping versus removing invasive plants is needed to adequately manage simultaneously for biodiversity and pollution targets.

Effects of Invasive-Plant Management on Nitrogen-Removal Services in Freshwater Tidal Marshes

PubMed Central

Alldred, Mary; Baines, Stephen B.; Findlay, Stuart

2016-01-01

Establishing relationships between biodiversity and ecosystem function is an ongoing endeavor in contemporary ecosystem and community ecology, with important practical implications for conservation and the maintenance of ecosystem services. Removal of invasive plant species to conserve native diversity is a common management objective in many ecosystems, including wetlands. However, substantial changes in plant community composition have the potential to alter sediment characteristics and ecosystem services, including permanent removal of nitrogen from these systems via microbial denitrification. A balanced assessment of costs associated with keeping and removing invasive plants is needed to manage simultaneously for biodiversity and pollution targets. We monitored small-scale removals of Phragmites australis over four years to determine their effects on potential denitrification rates relative to three untreated Phragmites sites and adjacent sites dominated by native Typha angustifolia. Sediment ammonium increased following the removal of vegetation from treated sites, likely as a result of decreases in both plant uptake and nitrification. Denitrification potentials were lower in removal sites relative to untreated Phragmites sites, a pattern that persisted at least two years following removal as native plant species began to re-colonize treated sites. These results suggest the potential for a trade-off between invasive-plant management and nitrogen-removal services. A balanced assessment of costs associated with keeping versus removing invasive plants is needed to adequately manage simultaneously for biodiversity and pollution targets. PMID:26914688

Individual migration timing of common nightingales is tuned with vegetation and prey phenology at breeding sites.

PubMed

Emmenegger, Tamara; Hahn, Steffen; Bauer, Silke

2014-03-21

The timing of migration substantially influences individual fitness. To match peak requirements with peak resource availability, we hypothesized that individual migrants schedule spring migration in close relation to seasonal changes in environmental conditions along the route and particularly, at the breeding destination.To test this hypothesis, we investigated the timing of spring migration in male common nightingales Luscinia megarhynchos, a small Palearctic-African long-distance migrant, by linking spring migration timing to the phenology of local environmental conditions at non-breeding migratory stopover and breeding sites. In particular, we related individual migration decisions (i.e. departure and arrival) of nine males to site-specific vegetation phenology (based on remotely sensed vegetation index) and a proxy of food availability (based on insects' thermal requirements). We found weak relation of departures from non-breeding and no relation of stopover timing with local phenology. However, our results showed that individuals, which departed early from their non-breeding sites and arrived early at the breeding site closely matched spring green-up there. Early arrival at the breeding site meant also a close match with peak food availability for adults and in a time-lagged manner, for offspring. Our findings suggest that male nightingale used cues other than local phenology for their departure decisions from non-breeding grounds and that there is some evidence for equalizing late departures during the course of migration.

75 FR 70001 - Proposed Agreement Pursuant to Section 122(h)(1) of the Comprehensive Environmental Response...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-11-16

... administrative agreement concerning the 76th & Albany hazardous waste site in Chicago, Illinois (the Site). EPA... potential imminent and substantial endangerments to human health or the environment presented or threatened...

Negative effects of climate warming on maize yield are reversed by the changing of sowing date and cultivar selection in Northeast China.

PubMed

Liu, Zhijuan; Hubbard, Kenneth G; Lin, Xiaomao; Yang, Xiaoguang

2013-11-01

Northeast China (NEC) accounts for about 30% of the nation's maize production in China. In the past three decades, maize yields in NEC have increased under changes in climate, cultivar selection and crop management. It is important to investigate the contribution of these changing factors to the historical yield increases to improve our understanding of how we can ensure increased yields in the future. In this study, we use phenology observations at six sites from 1981 to 2007 to detect trends in sowing dates and length of maize growing period, and then combine these observations with in situ temperature data to determine the trends of thermal time in the maize growing period, as a measure of changes in maize cultivars. The area in the vicinity of these six sites accounts for 30% of NEC's total maize production. The agricultural production systems simulator, APSIM-Maize model, was used to separate the impacts of changes in climate, sowing dates and thermal time requirements on maize phenology and yields. In NEC, sowing dates trended earlier in four of six sites and maturity dates trended later by 4-21 days. Therefore, the period from sowing to maturity ranged from 2 to 38 days longer in 2007 than it was in 1981. Our results indicate that climate trends alone would have led to a negative impact on maize. However, results from the adaptation assessments indicate that earlier sowing dates increased yields by up to 4%, and adoption of longer season cultivars caused a substantial increase in yield ranging from 13% to 38% over the past 27 years. Therefore, earlier sowing dates and introduction of cultivars with higher thermal time requirements in NEC have overcome the negative effects of climate change and turned what would have otherwise been a loss into a significant increase in maize yield. © 2013 John Wiley & Sons Ltd.

Role of volatilization in changing TBA and MTBE concentrations at MTBE-contaminated sites.

PubMed

Eweis, Juana B; Labolle, Eric M; Benson, David A; Fogg, Graham E

2007-10-01

Tertiary butyl alcohol (TBA) is commonly found as an impurity in methyl tertiary butyl ether (MTBE) added to gasoline. Frequent observations of high TBA, and especially rising TBA/MTBE concentration ratios, in groundwater at gasoline spill sites are generally attributed to microbial conversion of MTBE to TBA. Typically overlooked is the role of volatilization in the attenuation of these chemicals especially in the vadose zone, which is a source of contamination to groundwater. Here we show that volatilization, particularly through remediation by vapor extraction, can substantially affect the trends in TBA and MTBE concentrations and the respective mass available to impact groundwater aquifers, through the preferential removal of more volatile compounds, including MTBE, and the apparent enrichment of less volatile compounds like TBA. We demonstrate this phenomenon through numerical simulations of remedial-enhanced volatilization. Results show increases in TBA/MTBE concentration ratios consistent with ratios observed in groundwater at gasoline spill sites. Volatilization is an important, and potentially dominant, process that can result in concentration trends similar to those typically attributed to biodegradation.

The costs of chronic noise exposure for terrestrial organisms.

PubMed

Barber, Jesse R; Crooks, Kevin R; Fristrup, Kurt M

2010-03-01

Growth in transportation networks, resource extraction, motorized recreation and urban development is responsible for chronic noise exposure in most terrestrial areas, including remote wilderness sites. Increased noise levels reduce the distance and area over which acoustic signals can be perceived by animals. Here, we review a broad range of findings that indicate the potential severity of this threat to diverse taxa, and recent studies that document substantial changes in foraging and anti-predator behavior, reproductive success, density and community structure in response to noise. Effective management of protected areas must include noise assessment, and research is needed to further quantify the ecological consequences of chronic noise exposure in terrestrial environments.

Importance of closely spaced vertical sampling in delineating chemical and microbiological gradients in groundwater studies

USGS Publications Warehouse

Smith, R.L.; Harvey, R.W.; LeBlanc, D.R.

1991-01-01

Vertical gradients of selected chemical constituents, bacterial populations, bacterial activity and electron acceptors were investigated for an unconfined aquifer contaminated with nitrate and organic compounds on Cape Cod, Massachusetts, U.S.A. Fifteen-port multilevel sampling devices (MLS's) were installed within the contaminant plume at the source of the contamination, and at 250 and 2100 m downgradient from the source. Depth profiles of specific conductance and dissolved oxygen at the downgradient sites exhibited vertical gradients that were both steep and inversely related. Narrow zones (2-4 m thick) of high N2O and NH4+ concentrations were also detected within the contaminant plume. A 27-fold change in bacterial abundance; a 35-fold change in frequency of dividing cells (FDC), an indicator of bacterial growth; a 23-fold change in 3H-glucose uptake, a measure of heterotrophic activity; and substantial changes in overall cell morphology were evident within a 9-m vertical interval at 250 m downgradient. The existence of these gradients argues for the need for closely spaced vertical sampling in groundwater studies because small differences in the vertical placement of a well screen can lead to incorrect conclusions about the chemical and microbiological processes within an aquifer.Vertical gradients of selected chemical constituents, bacterial populations, bacterial activity and electron acceptors were investigated for an unconfined aquifer contaminated with nitrate and organic compounds on Cape Cod, Massachusetts, USA. Fifteen-port multilevel sampling devices (MLS's) were installed within the contaminant plume at the source of the contamination, and at 250 and 2100 m downgradient from the source. Depth profiles of specific conductance and dissolved oxygen at the downgradient sites exhibited vertical gradients that were both steep and inversely related. Narrow zones (2-4 m thick) of high N2O and NH4+ concentrations were also detected within the contaminant plume. A 27-fold change in bacterial abundance; a 35-fold change in frequency of dividing cells (FDC), an indicator of bacterial growth; a 23-fold change in 3H-glucose uptake, a measure of heterotrophic activity; and substantial changes in overall cell morphology were evident within a 9-m vertical interval at 250 m downgradient. The existence of these gradients argues for the need for closely spaced vertical sampling in ground-water studies because small differences in the vertical placement of a well screen can lead to incorrect conclusions about the chemical and microbiological processes within an aquifer.

20 CFR 404.1574a - When and how we will average your earnings.

Code of Federal Regulations, 2011 CFR

2011-04-01

... has been no change in the substantial gainful activity earnings levels, we will average your earnings... time during which the substantial gainful activity earnings levels change, we will average your earnings separately for each period in which a different substantial gainful activity earnings level...

20 CFR 404.1574a - When and how we will average your earnings.

Code of Federal Regulations, 2010 CFR

2010-04-01

... has been no change in the substantial gainful activity earnings levels, we will average your earnings... time during which the substantial gainful activity earnings levels change, we will average your earnings separately for each period in which a different substantial gainful activity earnings level...

Improving PICC use and outcomes in hospitalised patients: an interrupted time series study using MAGIC criteria.

PubMed

Swaminathan, Lakshmi; Flanders, Scott; Rogers, Mary; Calleja, Yvonne; Snyder, Ashley; Thyagarajan, Rama; Bercea, Priscila; Chopra, Vineet

2018-04-01

Although important in clinical care, reports of inappropriate peripherally inserted central catheter (PICC) use are growing. To test whether implementation of the Michigan Appropriateness Guide for Intravenous Catheters (MAGIC) can improve PICC use and patient outcomes. Quasi-experimental, interrupted time series design at one study site with nine contemporaneous external controls. Ten hospitals participating in a state-wide quality collaborative from 1 August 2014 to 31 July 2016. 963 hospitalised patients who received a PICC at the study site vs 6613 patients at nine control sites. A multimodal intervention (tool, training, electronic changes, education) derived from MAGIC. Appropriateness of PICC use and rates of PICC-associated complications. Segmented Poisson regression was used for analyses. Absolute rates of inappropriate PICC use decreased substantially at the study site versus controls (91.3% to 65.3% (-26.0%) vs 72.2% to 69.6% (-2.6%); P<0.001). After adjusting for underlying trends and patient characteristics, however, a marginally significant 13.8% decrease in inappropriate PICC use occurred at the study site (incidence rate ratio 0.86 (95% CI 0.74 to 0.99; P=0.048)); no change was observed at control sites. While the incidence of all PICC complications decreased to a greater extent at the study site, the absolute difference between controls and intervention was small (33.9% to 26.7% (-7.2%) vs 22.4% to 20.8% (-1.6%); P=0.036). Non-randomised design limits inference; the most effective component of the multimodal intervention is unknown; effects following implementation were modest. In a multihospital quality improvement project, implementation of MAGIC improved PICC appropriateness and reduced complications to a modest extent. Given the size and resources required for this study, future work should consider cost-to-benefit ratio of similar approaches. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

Implementation of Treat-to-Target in Rheumatoid Arthritis Through a Learning Collaborative: Results of a Randomized Controlled Trial.

PubMed

Solomon, Daniel H; Losina, Elena; Lu, Bing; Zak, Agnes; Corrigan, Cassandra; Lee, Sara B; Agosti, Jenifer; Bitton, Asaf; Harrold, Leslie R; Pincus, Theodore; Radner, Helga; Yu, Zhi; Smolen, Josef S; Fraenkel, Liana; Katz, Jeffrey N

2017-07-01

Treat-to-target (TTT) is an accepted paradigm for the management of rheumatoid arthritis (RA), but some evidence suggests poor adherence. The purpose of this study was to test the effects of a group-based multisite improvement learning collaborative on adherence to TTT. We conducted a cluster-randomized quality-improvement trial with waitlist control across 11 rheumatology sites in the US. The intervention entailed a 9-month group-based learning collaborative that incorporated rapid-cycle improvement methods. A composite TTT implementation score was calculated as the percentage of 4 required items documented in the visit notes for each patient at 2 time points, as evaluated by trained staff. The mean change in the implementation score for TTT across all patients for the intervention sites was compared with that for the control sites after accounting for intracluster correlation using linear mixed models. Five sites with a total of 23 participating rheumatology providers were randomized to intervention and 6 sites with 23 participating rheumatology providers were randomized to the waitlist control. The intervention included 320 patients, and the control included 321 patients. At baseline, the mean TTT implementation score was 11% in both arms; after the 9-month intervention, the mean TTT implementation score was 57% in the intervention group and 25% in the control group (change in score of 46% for intervention and 14% for control; P = 0.004). We did not observe excessive use of resources or excessive occurrence of adverse events in the intervention arm. A learning collaborative resulted in substantial improvements in adherence to TTT for the management of RA. This study supports the use of an educational collaborative to improve quality. © 2017, American College of Rheumatology.

Assessment of the Effect of Air Pollution Controls on Trends in Shortwave Radiation over the United States from 1995 through 2010 from Multiple Observation Networks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gan, Chuen-Meei; Pleim, Jonathan; Mathur, Rohit

2014-02-14

Long term datasets of total (all-sky) and clear-sky downwelling shortwave (SW) radiation, cloud cover fraction (cloudiness) and aerosol optical depth (AOD) are analyzed together with aerosol concentration from several networks (e.g. SURFRAD, CASTNET, IMPROVE and ARM) in the United States (US). Seven states with varying climatology are selected to better understand the effect of aerosols and clouds on SW radiation. This analysis aims to test the hypothesis that the reductions in anthropogenic aerosol burden resulting from substantial reductions in emissions of sulfur dioxide and nitrogen oxides over the past 15 years across the US has caused an increase in surfacemore » SW radiation. We show that the total and clear-sky downwelling SW radiation from seven sites have increasing trends except Penn State which shows no tendency in clear-sky SW radiation. After investigating several confounding factors, the causes can be due to the geography of the site, aerosol distribution, heavy air traffic and increasing cloudiness. Moreover, we assess the relationship between total column AOD with surface aerosol concentration to test our hypothesis. In our findings, the trends of clear-sky SW radiation, AOD, and aerosol concentration from the sites in eastern US agree well with our hypothesis. However, the sites in western US demonstrate increasing AOD associated with mostly increasing trends in surface aerosol concentration. At these sites, the changes in aerosol burden and/or direct aerosol effects alone cannot explain the observed changes in SW radiation, but other factors need to be considered such as cloudiness, aerosol vertical profiles and elevated plumes.« less

Finite element modeling of arachnid slit sensilla-I. The mechanical significance of different slit arrays.

PubMed

Hössl, Bernhard; Böhm, Helmut J; Rammerstorfer, Franz G; Barth, Friedrich G

2007-04-01

Arachnid strain sensitive slit sensilla are elongated openings in the cuticle with aspect ratios (slit length l/slit width b) of up to 100. Planar Finite Element (FE) models are used to calculate the relative slit face displacements, Dc, at the centers of single slits and of arrangements of mechanically interacting slits under uni-axial compressive far-field loads. Our main objective is to quantitatively study the role of the following geometrical parameters in stimulus transformation: aspect ratio, slit shape, geometry of the slits' centerlines, load direction, lateral distance S, longitudinal shift lambda, and difference in slit length Deltal between neighboring slits. Slit face displacements are primarily sensitive to slit length and load direction but little affected by aspect ratios between 20 and 100. In stacks of five parallel slits at lateral distances typical of lyriform organs (S=0.03 l) the longitudinal shift lambda substantially influences slit compression. A change of lambda from 0 to 0.85 l causes changes of up to 420% in Dc. Even minor morphological variations in the arrangements can substantially influence the stimulus transformation. The site of transduction in real slit sensilla does not always coincide with the position of maximum slit compression predicted by simplified models.

Detecting declines in the abundance of a bull trout (Salvelinus confluentus) population: Understanding the accuracy, precision, and costs of our efforts

USGS Publications Warehouse

Al-Chokhachy, R.; Budy, P.; Conner, M.

2009-01-01

Using empirical field data for bull trout (Salvelinus confluentus), we evaluated the trade-off between power and sampling effort-cost using Monte Carlo simulations of commonly collected mark-recapture-resight and count data, and we estimated the power to detect changes in abundance across different time intervals. We also evaluated the effects of monitoring different components of a population and stratification methods on the precision of each method. Our results illustrate substantial variability in the relative precision, cost, and information gained from each approach. While grouping estimates by age or stage class substantially increased the precision of estimates, spatial stratification of sampling units resulted in limited increases in precision. Although mark-resight methods allowed for estimates of abundance versus indices of abundance, our results suggest snorkel surveys may be a more affordable monitoring approach across large spatial scales. Detecting a 25% decline in abundance after 5 years was not possible, regardless of technique (power = 0.80), without high sampling effort (48% of study site). Detecting a 25% decline was possible after 15 years, but still required high sampling efforts. Our results suggest detecting moderate changes in abundance of freshwater salmonids requires considerable resource and temporal commitments and highlight the difficulties of using abundance measures for monitoring bull trout populations.

Projecting impacts of climate change on hydrological conditions and biotic responses in a chalk valley riparian wetland

NASA Astrophysics Data System (ADS)

House, A. R.; Thompson, J. R.; Acreman, M. C.

2016-03-01

Projected changes in climate are likely to substantially impact wetland hydrological conditions that will in turn have implications for wetland ecology. Assessing ecohydrological impacts of climate change requires models that can accurately simulate water levels at the fine-scale resolution to which species and communities respond. Hydrological conditions within the Lambourn Observatory at Boxford, Berkshire, UK were simulated using the physically based, distributed model MIKE SHE, calibrated to contemporary surface and groundwater levels. The site is a 10 ha lowland riparian wetland where complex geological conditions and channel management exert strong influences on the hydrological regime. Projected changes in precipitation, potential evapotranspiration, channel discharge and groundwater level were derived from the UK Climate Projections 2009 ensemble of climate models for the 2080s under different scenarios. Hydrological impacts of climate change differ through the wetland over short distances depending on the degree of groundwater/surface-water interaction. Discrete areas of groundwater upwelling are associated with an exaggerated response of water levels to climate change compared to non-upwelling areas. These are coincident with regions where a weathered chalk layer, which otherwise separates two main aquifers, is absent. Simulated water levels were linked to requirements of the MG8 plant community and Desmoulin's whorl snail (Vertigo moulinsiana) for which the site is designated. Impacts on each are shown to differ spatially and in line with hydrological impacts. Differences in water level requirements for this vegetation community and single species highlight the need for separate management strategies in distinct areas of the wetland.

Effects of sea ice on winter site fidelity of Pacific common eiders (Somateria mollissima v-nigrum)

USGS Publications Warehouse

Petersen, Margaret R.; Douglas, David C.; Wilson, Heather M.; McCloskey, Sarah E.

2012-01-01

In northern marine habitats, the presence or absence of sea ice results in variability in the distribution of many species and the quality and availability of pelagic winter habitat. To understand the effects of ice on intra- and inter-annual winter site fidelity and movements in a northern sea-duck species, we marked 25 adult Pacific Common Eiders (Somateria mollissima v-nigrum) on their nesting area at Cape Espenberg, Alaska, with satellite transmitters and monitored their movements to their wintering areas in the northern Bering Sea for a 2-year period. We examined changes in winter fidelity in relation to home-range characteristics and ice. Characteristics of polynyas (areas with persistent open water during winter) varied substantially and likely had an effect on the size of winter ranges and movements within polynyas. Movements within polynyas were correlated with changes in weather that affected ice conditions. Ninety-five percent of individuals were found within their 95% utilization distribution (UD) of the previous year, and 90% were found within their 50% UD. Spatial distributions of winter locations between years changed for 32% of the individuals; however, we do not consider these subtle movements biologically significant. Although ice conditions varied between polynyas within and between years, the Common Eiders monitored in our study showed a high degree of fidelity to their winter areas. This observation is counterintuitive, given the requirement that resources are predictable for site fidelity to occur; however, ice may not have been severe enough to restrict access to other resources and, subsequently, force birds to move.

The Potential Impact of Satellite-Retrieved Cloud Parameters on Ground-Level PM2.5 Mass and Composition

PubMed Central

Chang, Howard H.; Wang, Yujie; Hu, Xuefei; Lyapustin, Alexei

2017-01-01

Satellite-retrieved aerosol optical properties have been extensively used to estimate ground-level fine particulate matter (PM2.5) concentrations in support of air pollution health effects research and air quality assessment at the urban to global scales. However, a large proportion, ~70%, of satellite observations of aerosols are missing as a result of cloud-cover, surface brightness, and snow-cover. The resulting PM2.5 estimates could therefore be biased due to this non-random data missingness. Cloud-cover in particular has the potential to impact ground-level PM2.5 concentrations through complex chemical and physical processes. We developed a series of statistical models using the Multi-Angle Implementation of Atmospheric Correction (MAIAC) aerosol product at 1 km resolution with information from the MODIS cloud product and meteorological information to investigate the extent to which cloud parameters and associated meteorological conditions impact ground-level aerosols at two urban sites in the US: Atlanta and San Francisco. We find that changes in temperature, wind speed, relative humidity, planetary boundary layer height, convective available potential energy, precipitation, cloud effective radius, cloud optical depth, and cloud emissivity are associated with changes in PM2.5 concentration and composition, and the changes differ by overpass time and cloud phase as well as between the San Francisco and Atlanta sites. A case-study at the San Francisco site confirmed that accounting for cloud-cover and associated meteorological conditions could substantially alter the spatial distribution of monthly ground-level PM2.5 concentrations. PMID:29057838

The Potential Impact of Satellite-Retrieved Cloud Parameters on Ground-Level PM2.5 Mass and Composition

NASA Technical Reports Server (NTRS)

Belle, Jessica H.; Chang, Howard H.; Wang, Yujie; Hu, Xuefei; Lyapustin, Alexei; Liu, Yang

2017-01-01

Satellite-retrieved aerosol optical properties have been extensively used to estimate ground-level fine particulate matter (PM2.5) concentrations in support of air pollution health effects research and air quality assessment at the urban to global scales. However, a large proportion, approximately 70%, of satellite observations of aerosols are missing as a result of cloud-cover, surface brightness, and snow-cover. The resulting PM2.5 estimates could therefore be biased due to this non-random data missingness. Cloud-cover in particular has the potential to impact ground-level PM2.5 concentrations through complex chemical and physical processes. We developed a series of statistical models using the Multi-Angle Implementation of Atmospheric Correction (MAIAC) aerosol product at 1 km resolution with information from the MODIS cloud product and meteorological information to investigate the extent to which cloud parameters and associated meteorological conditions impact ground-level aerosols at two urban sites in the US: Atlanta and San Francisco. We find that changes in temperature, wind speed, relative humidity, planetary boundary layer height, convective available potential energy, precipitation, cloud effective radius, cloud optical depth, and cloud emissivity are associated with changes in PM2.5 concentration and composition, and the changes differ by overpass time and cloud phase as well as between the San Francisco and Atlanta sites. A case-study at the San Francisco site confirmed that accounting for cloud-cover and associated meteorological conditions could substantially alter the spatial distribution of monthly ground-level PM2.5 concentrations.

The Potential Impact of Satellite-Retrieved Cloud Parameters on Ground-Level PM2.5 Mass and Composition.

PubMed

Belle, Jessica H; Chang, Howard H; Wang, Yujie; Hu, Xuefei; Lyapustin, Alexei; Liu, Yang

2017-10-18

Satellite-retrieved aerosol optical properties have been extensively used to estimate ground-level fine particulate matter (PM 2.5 ) concentrations in support of air pollution health effects research and air quality assessment at the urban to global scales. However, a large proportion, ~70%, of satellite observations of aerosols are missing as a result of cloud-cover, surface brightness, and snow-cover. The resulting PM 2.5 estimates could therefore be biased due to this non-random data missingness. Cloud-cover in particular has the potential to impact ground-level PM 2.5 concentrations through complex chemical and physical processes. We developed a series of statistical models using the Multi-Angle Implementation of Atmospheric Correction (MAIAC) aerosol product at 1 km resolution with information from the MODIS cloud product and meteorological information to investigate the extent to which cloud parameters and associated meteorological conditions impact ground-level aerosols at two urban sites in the US: Atlanta and San Francisco. We find that changes in temperature, wind speed, relative humidity, planetary boundary layer height, convective available potential energy, precipitation, cloud effective radius, cloud optical depth, and cloud emissivity are associated with changes in PM 2.5 concentration and composition, and the changes differ by overpass time and cloud phase as well as between the San Francisco and Atlanta sites. A case-study at the San Francisco site confirmed that accounting for cloud-cover and associated meteorological conditions could substantially alter the spatial distribution of monthly ground-level PM 2.5 concentrations.

Changes in base composition bias of nuclear and mitochondrial genes in lice (Insecta: Psocodea).

PubMed

Yoshizawa, Kazunori; Johnson, Kevin P

2013-12-01

While it is well known that changes in the general processes of molecular evolution have occurred on a variety of timescales, the mechanisms underlying these changes are less well understood. Parasitic lice ("Phthiraptera") and their close relatives (infraorder Nanopsocetae of the insect order Psocodea) are a group of insects well known for their unusual features of molecular evolution. We examined changes in base composition across parasitic lice and bark lice. We identified substantial differences in percent GC content between the clade comprising parasitic lice plus closely related bark lice (=Nanopsocetae) versus all other bark lice. These changes occurred for both nuclear and mitochondrial protein coding and ribosomal RNA genes, often in the same direction. To evaluate whether correlations in base composition change also occurred within lineages, we used phylogenetically controlled comparisons, and in this case few significant correlations were identified. Examining more constrained sites (first/second codon positions and rRNA) revealed that, in comparison to the other bark lice, the GC content of parasitic lice and close relatives tended towards 50 % either up from less than 50 % GC or down from greater than 50 % GC. In contrast, less constrained sites (third codon positions) in both nuclear and mitochondrial genes showed less of a consistent change of base composition in parasitic lice and very close relatives. We conclude that relaxed selection on this group of insects is a potential explanation of the change in base composition for both mitochondrial and nuclear genes, which could lead to nucleotide frequencies closer to random expectation (i.e., 50 % GC) in the absence of any mutation bias. Evidence suggests this relaxed selection arose once in the non-parasitic common ancestor of Phthiraptera + Nanopsocetae and is not directly related to the evolution of the parasitism in lice.

The Ohio River Basin energy facility siting model. Volume 1: Methodology

NASA Astrophysics Data System (ADS)

Fowler, G. L.; Bailey, R. E.; Gordon, S. I.; Jansen, S. D.; Randolph, J. C.; Jones, W. W.

1981-04-01

The siting model developed for ORBES is specifically designed for regional policy analysis. The region includes 423 counties in an area that consists of all of Kentucky and substantial portions of Illinois, Indiana, Ohio, Pennsylvania, and West Virginia.

Temporal variability of exchange between groundwater and surface water based on high-frequency direct measurements of seepage at the sediment-water interface

USGS Publications Warehouse

Rosenberry, Donald O.; Sheibley, Rich W.; Cox, Stephen E.; Simonds, Frederic W.; Naftz, David L.

2013-01-01

Seepage at the sediment-water interface in several lakes, a large river, and an estuary exhibits substantial temporal variability when measured with temporal resolution of 1 min or less. Already substantial seepage rates changed by 7% and 16% in response to relatively small rain events at two lakes in the northeastern USA, but did not change in response to two larger rain events at a lake in Minnesota. However, seepage at that same Minnesota lake changed by 10% each day in response to withdrawals from evapotranspiration. Seepage increased by more than an order of magnitude when a seiche occurred in the Great Salt Lake, Utah. Near the head of a fjord in Puget Sound, Washington, seepage in the intertidal zone varied greatly from −115 to +217 cm d−1 in response to advancing and retreating tides when the time-averaged seepage was upward at +43 cm d−1. At all locations, seepage variability increased by one to several orders of magnitude in response to wind and associated waves. Net seepage remained unchanged by wind unless wind also induced a lake seiche. These examples from sites distributed across a broad geographic region indicate that temporal variability in seepage in response to common hydrological events is much larger than previously realized. At most locations, seepage responded within minutes to changes in surface-water stage and within minutes to hours to groundwater recharge associated with rainfall. Likely implications of this dynamism include effects on water residence time, geochemical transformations, and ecological conditions at and near the sediment-water interface.

Marsh dieback, loss, and recovery mapped with satellite optical, airborne polarimetric radar, and field data

USGS Publications Warehouse

Ramsey, Elijah W.; Rangoonwala, Amina; Chi, Zhaohui; Jones, Cathleen E.; Bannister, Terri

2014-01-01

Landsat Thematic Mapper and Satellite Pour l'Observation de la Terre (SPOT) satellite based optical sensors, NASA Uninhabited Aerial Vehicle synthetic aperture radar (UAVSAR) polarimetric SAR (PolSAR), and field data captured the occurrence and the recovery of an undetected dieback that occurred between the summers of 2010, 2011, and 2012 in the Spartina alterniflora marshes of coastal Louisiana. Field measurements recorded the dramatic biomass decrease from 2010 to 2011 and a biomass recovery in 2012 dominated by a decrease of live biomass, and the loss of marsh as part of the dieback event. Based on an established relationship, the near-infrared/red vegetation index (VI) and site-specific measurements delineated a contiguous expanse of marsh dieback encompassing 6649.9 ha of 18,292.3 ha of S. alterniflora marshes within the study region. PolSAR data were transformed to variables used in biophysical mapping, and of this variable suite, the cross-polarization HV (horizontal send and vertical receive) backscatter was the best single indicator of marsh dieback and recovery. HV backscatter exhibited substantial and significant changes over the dieback and recovery period, tracked measured biomass changes, and significantly correlated with the live/dead biomass ratio. Within the context of regional trends, both HV and VI indicators started higher in pre-dieback marshes and exhibited substantially and statistically higher variability from year to year than that exhibited in the non-dieback marshes. That distinct difference allowed the capturing of the S. alterniflora marsh dieback and recovery; however, these changes were incorporated in a regional trend exhibiting similar but more subtle biomass composition changes.

Freshwater polychaetes (Manayunkia speciosa) near the Detroit River, western Lake Erie: Abundance and life‐history characteristics

USGS Publications Warehouse

Schloesser, Donald W.; Malakauskas, David M.; Malakauskas, Sarah J.

2016-01-01

Freshwater polychaetes are relatively rare and little-studied members of the benthos of lakes and rivers. We studied one polychaete species (Manayunkia speciosa) in Lake Erie near the mouth of the Detroit River. Abundances at one site were determined between 1961 and 2013 and life‐history characteristics at two sites were determined seasonally (March–November) in 2009–2010 and 2012–2013. Life‐history characteristics included abundances, length‐frequency distributions, presence/absence of constructed tubes, sexual maturity, and number and maturation of young of year (YOY) in tubes. Long-term abundances decreased in successive time periods between 1961 and 2003 (mean range = 57,570 to 2583/m2) but few changes occurred between 2003 and 2013 (mean = 5007/m2; range/y = 2355–8216/m2). Seasonal abundances varied substantially between sites and years, but overall, abundances were low in March–April, high in May–August, and low in September–November. Although reproduction was continuous throughout warmer months, en masse recruitment, as revealed by length–frequency distributions, occurred in a brief period late‐June to mid-July, and possibly in early-September. All life history characteristics, including tube construction, were dependent on water temperatures (> 5 °C in spring and < 15 °C in fall). These results generally agree with and complement laboratory studies of M. speciosa in the Pacific Northwest where M. speciosa hosts parasites that cause substantial fish mortalities. Although abundance ofM. speciosa near the mouth of the Detroit River was 33-fold lower in 2013 than it was in 1961, this population has persisted for five decades and, therefore, has the potential to harbor parasites that may cause fish mortalities in the Great Lakes.

Restoration and Carbon Sequestration Potential of Sub-Humid Shrublands in a Changing Climate

NASA Astrophysics Data System (ADS)

Adhikari, A.; White, J. D.

2014-12-01

Over the past century, various anthropogenic activities have resulted into loss of more than 95% shrub cover from the Lower Rio Grande Valley (LRGV), TX, USA. Restoration of these shrublands has been a priority for two endangered felids, ocelots and jaguarondis, that require contiguous shrub cover. While woody shrub restoration may be considered the antithesis of shrub encroachment, this type of habitat restoration also provides a substantial opportunity of increasing carbon sequestration. Restoration of these shrublands by U.S. federal refuge managers during the past three decades have resulted some successful reestablishment of native shrub communities. We assessed restoration efficacy, carbon storage capacity, and future climate change impacts using combined remote sensing and modeling techniques. We first developed a canopy identification algorithm using a spectral vegetation index from the Digital Ortho Quarter Quadrangle data to estimate individual shrub canopy area. The area was used as input into allometric equations to estimate aboveground biomass for dominant shrub species across this region. The accuracy of the automated canopy identification by the algorithm was 79% when compared to the number of visually-determined, hand-digitized shrub canopies. From this analysis, we found that naturally regenerated sites had higher average shrub densities of 174/ha when compared with 156 individuals/ha for replanted sites. However, average biomass for naturally regenerated sites (3.28 Mg C/ha) stored less biomass compared to that of replanted sites (3.71 Mg C/ha). We found that average biomass per shrub in naturally regenerated sites was lower compared to that of replanted sites (p < 0.05). Shrub density and biomass estimated from the remote sensing data was used as input for the Physiological Principles in Predicting Growth model to predict future shrub biomass for three GCM scenarios projected by IPCC (2007). Modeling showed that the LRGV may produce lower biomass per ha for the projected higher emission scenarios compared to lower emission scenarios. We conclude that restoration efforts within LRGV have contributed to increasing shrub density and sequestering carbon in tissue biomass, but future climate change is likely to reduce its carbon sequestration potential.

Estimation of ultrafine particle concentrations at near-highway residences using data from local and central monitors

PubMed Central

Fuller, Christina H.; Brugge, Doug; Williams, Paige; Mittleman, Murray; Durant, John L.; Spengler, John D.

2012-01-01

Ultrafine particles (UFP; aerodynamic diameter < 0.1 micrometers) are a ubiquitous exposure in the urban environment and are elevated near highways. Most epidemiological studies of UFP health effects use central site monitoring data, which may misclassify exposure. Our aims were to: (1) examine the relationship between distant and proximate monitoring sites and their ability to predict hourly UFP concentration measured at residences in an urban community with a major interstate highway and; (2) determine if meteorology and proximity to traffic improve explanatory power. Short-term (1 – 3 weeks) residential monitoring of UFP concentration was conducted at 18 homes. Long-term monitoring was conducted at two near-highway monitoring sites and a central site. We created models of outdoor residential UFP concentration based on concentrations at the near-highway site, at the central site, at both sites together and without fixed sites. UFP concentration at residential sites was more highly correlated with those at a near-highway site than a central site. In regression models of each site alone, a 10% increase in UFP concentration at a near-highway site was associated with a 6% (95% CI: 6%, 7%) increase at residences while a 10% increase in UFP concentration at the central site was associated with a 3% (95% CI: 2%, 3%) increase at residences. A model including both sites showed minimal change in the magnitude of the association between the near-highway site and the residences, but the estimated association with UFP concentration at the central site was substantially attenuated. These associations remained after adjustment for other significant predictors of residential UFP concentration, including distance from highway, wind speed, wind direction, highway traffic volume and precipitation. The use of a central site as an estimate of personal exposure for populations near local emissions of traffic-related air pollutants may result in exposure misclassification. PMID:23645993

Estimation of ultrafine particle concentrations at near-highway residences using data from local and central monitors.

PubMed

Fuller, Christina H; Brugge, Doug; Williams, Paige; Mittleman, Murray; Durant, John L; Spengler, John D

2012-09-01

Ultrafine particles (UFP; aerodynamic diameter < 0.1 micrometers) are a ubiquitous exposure in the urban environment and are elevated near highways. Most epidemiological studies of UFP health effects use central site monitoring data, which may misclassify exposure. Our aims were to: (1) examine the relationship between distant and proximate monitoring sites and their ability to predict hourly UFP concentration measured at residences in an urban community with a major interstate highway and; (2) determine if meteorology and proximity to traffic improve explanatory power. Short-term (1 - 3 weeks) residential monitoring of UFP concentration was conducted at 18 homes. Long-term monitoring was conducted at two near-highway monitoring sites and a central site. We created models of outdoor residential UFP concentration based on concentrations at the near-highway site, at the central site, at both sites together and without fixed sites. UFP concentration at residential sites was more highly correlated with those at a near-highway site than a central site. In regression models of each site alone, a 10% increase in UFP concentration at a near-highway site was associated with a 6% (95% CI: 6%, 7%) increase at residences while a 10% increase in UFP concentration at the central site was associated with a 3% (95% CI: 2%, 3%) increase at residences. A model including both sites showed minimal change in the magnitude of the association between the near-highway site and the residences, but the estimated association with UFP concentration at the central site was substantially attenuated. These associations remained after adjustment for other significant predictors of residential UFP concentration, including distance from highway, wind speed, wind direction, highway traffic volume and precipitation. The use of a central site as an estimate of personal exposure for populations near local emissions of traffic-related air pollutants may result in exposure misclassification.

Climate change, food, water and population health in China.

PubMed

Tong, Shilu; Berry, Helen L; Ebi, Kristie; Bambrick, Hilary; Hu, Wenbiao; Green, Donna; Hanna, Elizabeth; Wang, Zhiqiang; Butler, Colin D

2016-10-01

Anthropogenic climate change appears to be increasing the frequency, duration and intensity of extreme weather events. Such events have already had substantial impacts on socioeconomic development and population health. Climate change's most profound impacts are likely to be on food, health systems and water. This paper explores how climate change will affect food, human health and water in China. Projections indicate that the overall effects of climate change, land conversion and reduced water availability could reduce Chinese food production substantially - although uncertainty is inevitable in such projections. Climate change will probably have substantial impacts on water resources - e.g. changes in rainfall patterns and increases in the frequencies of droughts and floods in some areas of China. Such impacts would undoubtedly threaten population health and well-being in many communities. In the short-term, population health in China is likely to be adversely affected by increases in air temperatures and pollution. In the medium to long term, however, the indirect impacts of climate change - e.g. changes in the availability of food, shelter and water, decreased mental health and well-being and changes in the distribution and seasonality of infectious diseases - are likely to grow in importance. The potentially catastrophic consequences of climate change can only be avoided if all countries work together towards a substantial reduction in the emission of so-called greenhouse gases and a substantial increase in the global population's resilience to the risks of climate variability and change.

The introduction of strain and its effects on the structure and stability of T4 lysozyme.

PubMed

Liu, R; Baase, W A; Matthews, B W

2000-01-07

In order to try to better understand the role played by strain in the structure and stability of a protein a series of "small-to-large" mutations was made within the core of T4 lysozyme. Three different alanine residues, one involved in backbone contacts, one in side-chain contacts, and the third adjacent to a small cavity, were each replaced with subsets of the larger residues, Val, Leu, Ile, Met, Phe and Trp. As expected, the protein is progressively destabilized as the size of the introduced side-chain becomes larger. There does, however, seem to be a limit to the destabilization, suggesting that a protein of a given size may be capable of maintaining only a certain amount of strain. The changes in stability vary greatly from site to site. Substitution of larger residues for both Ala42 and Ala98 substantially destabilize the protein, even though the primary contacts in one case are predominantly with side-chain atoms and in the other with backbone. The results suggest that it is neither practical nor meaningful to try to separate the effects of introduced strain on side-chains from the effects on the backbone. Substitutions at Ala129 are much less destabilizing than at sites 42 or 98. This is most easily understood in terms of the pre-existing cavity, which provides partial space to accommodate the introduced side-chains. Crystal structures were obtained for a number of the mutants. These show that the changes in structure to accommodate the introduced side-chains usually consist of essentially rigid-body displacements of groups of linked atoms, achieved through relatively small changes in torsion angles. On rare occasions, a side-chain close to the site of substitution may change to a different rotamer. When such rotomer changes occur, they permit the structure to dissipate strain by a response that is plastic rather than elastic. In one case, a surface loop moves 1.2 A, not in direct response to a mutation, but in an interaction mediated via an intermolecular contact. It illustrates how the structure of a protein can be modified by crystal contacts. Copyright 2000 Academic Press.

Probabilistic evaluation of shallow groundwater resources at a hypothetical carbon sequestration site

DOE PAGES

Dai, Zhenxue; Keating, Elizabeth; Bacon, Diana H.; ...

2014-03-07

Carbon sequestration in geologic reservoirs is an important approach for mitigating greenhouse gases emissions to the atmosphere. This study first develops an integrated Monte Carlo method for simulating CO 2 and brine leakage from carbon sequestration and subsequent geochemical interactions in shallow aquifers. Then, we estimate probability distributions of five risk proxies related to the likelihood and volume of changes in pH, total dissolved solids, and trace concentrations of lead, arsenic, and cadmium for two possible consequence thresholds. The results indicate that shallow groundwater resources may degrade locally around leakage points by reduced pH and increased total dissolved solids (TDS).more » The volumes of pH and TDS plumes are most sensitive to aquifer porosity, permeability, and CO 2 and brine leakage rates. The estimated plume size of pH change is the largest, while that of cadmium is the smallest among the risk proxies. Plume volume distributions of arsenic and lead are similar to those of TDS. The scientific results from this study provide substantial insight for understanding risks of deep fluids leaking into shallow aquifers, determining the area of review, and designing monitoring networks at carbon sequestration sites.« less

Trends and Controls of inter-annual Variability in the Carbon Budget of Terrestrial Ecosystems

NASA Astrophysics Data System (ADS)

Cescatti, A.; Marcolla, B.

2014-12-01

The climate sensitivity of the terrestrial carbon budget will substantially affect the sign and strength of the land-climate feedbacks and the future climate trajectories. Current trends in the inter-annual variability of terrestrial carbon fluxes (IAV) may contribute to clarify the relative role of physical and biological controls of ecosystem responses to climate change. For this purpose we investigated how recent climate variability has impacted the carbon fluxes at long-term FLUXNET sites. Using a novel method, the IAV has been factored out in climate induced variability (physical control), variability due to changes in ecosystem functioning (biological control) and the interaction of the two terms. The relative control of the main climatic drivers (temperature, water availability) on the physical and biological sources of IAV has been investigated using both site level fluxes and global gridded products generated from the up-scaling of flux data. Results of this analysis highlight the fundamental role of precipitation trends on the pattern of IAV in the last 30 years. Our findings on the spatial/temporal trends of IAV have been finally confirmed using the signal derived from the global network of atmospheric CO2 concentrations measurements.

Inhibitor-induced structural change in the HCV IRES domain IIa RNA

PubMed Central

Paulsen, Ryan B.; Seth, Punit P.; Swayze, Eric E.; Griffey, Richard H.; Skalicky, Jack J.; Cheatham, Thomas E.; Davis, Darrell R.

2010-01-01

Translation of the hepatitis C virus (HCV) RNA is initiated from a highly structured internal ribosomal entry site (IRES) in the 5′ untranslated region (5′ UTR) of the RNA genome. An important structural feature of the native RNA is an approximately 90° helical bend localized to domain IIa that positions the apical loop of domain IIb of the IRES near the 40S ribosomal E-site to promote eIF2-GDP release, facilitating 80S ribosome assembly. We report here the NMR structure of a domain IIa construct in complex with a potent small-molecule inhibitor of HCV replication. Molecular dynamics refinement in explicit solvent and subsequent energetic analysis indicated that each inhibitor stereoisomer bound with comparable affinity and in an equivalent binding mode. The in silico analysis was substantiated by fluorescence-based assays showing that the relative binding free energies differed by only 0.7 kcal/mol. Binding of the inhibitor displaces key nucleotide residues within the bulge region, effecting a major conformational change that eliminates the bent RNA helical trajectory, providing a mechanism for the antiviral activity of this inhibitor class. PMID:20360559

[Narcissism in the world of Facebook. An evolutionary psychopathological interpretation].

PubMed

Szekeres, Adám; Tisljár, Roland

2013-01-01

In the last few decades there has been a considerable increase in the levels of narcissism among the population of individualistic, western cultures. The phenomena of narcissism induced a large number of psychological researches, some of which approaches the issue from changes in environmental factors. The modern environment of these days is substantially different from the one to which our ancestors have adapted over millions of years of evolution. The research results of narcissism from the perspective of evolutionary psychopathology approach have yet to integrate.The present review focuses on two studies and empirical findings induced by them in which an attempt is made to explore the evolutionary origins of narcissism. Relating to these studies we present the main mechanisms by which evolution may have played a role in the development and maintenance of narcissism. One of the significant elements of the current, changing social environment allowing virtual contacts is the social networking site called Facebook. Following the presentation of the main features of the site we discuss research results in connection with narcissistic traits and Facebook usage. Finally an attempt is made to integrate these findings into an evolutionary psychopathological framework.

Individual Movement Strategies Revealed through Novel Clustering of Emergent Movement Patterns

NASA Astrophysics Data System (ADS)

Valle, Denis; Cvetojevic, Sreten; Robertson, Ellen P.; Reichert, Brian E.; Hochmair, Hartwig H.; Fletcher, Robert J.

2017-03-01

Understanding movement is critical in several disciplines but analysis methods often neglect key information by adopting each location as sampling unit, rather than each individual. We introduce a novel statistical method that, by focusing on individuals, enables better identification of temporal dynamics of connectivity, traits of individuals that explain emergent movement patterns, and sites that play a critical role in connecting subpopulations. We apply this method to two examples that span movement networks that vary considerably in size and questions: movements of an endangered raptor, the snail kite (Rostrhamus sociabilis plumbeus), and human movement in Florida inferred from Twitter. For snail kites, our method reveals substantial differences in movement strategies for different bird cohorts and temporal changes in connectivity driven by the invasion of an exotic food resource, illustrating the challenge of identifying critical connectivity sites for conservation in the presence of global change. For human movement, our method is able to reliably determine the origin of Florida visitors and identify distinct movement patterns within Florida for visitors from different places, providing near real-time information on the spatial and temporal patterns of tourists. These results emphasize the need to integrate individual variation to generate new insights when modeling movement data.

The C-terminal domain of Tetrahymena thermophila telomerase holoenzyme protein p65 induces multiple structural changes in telomerase RNA

PubMed Central

Akiyama, Benjamin M.; Loper, John; Najarro, Kevin; Stone, Michael D.

2012-01-01

The unique cellular activity of the telomerase reverse transcriptase ribonucleoprotein (RNP) requires proper assembly of protein and RNA components into a functional complex. In the ciliate model organism Tetrahymena thermophila, the La-domain protein p65 is required for in vivo assembly of telomerase. Single-molecule and biochemical studies have shown that p65 promotes efficient RNA assembly with the telomerase reverse transcriptase (TERT) protein, in part by inducing a bend in the conserved stem IV region of telomerase RNA (TER). The domain architecture of p65 consists of an N-terminal domain, a La-RRM motif, and a C-terminal domain (CTD). Using single-molecule Förster resonance energy transfer (smFRET), we demonstrate the p65CTD is necessary for the RNA remodeling activity of the protein and is sufficient to induce a substantial conformational change in stem IV of TER. Moreover, nuclease protection assays directly map the site of p65CTD interaction to stem IV and reveal that, in addition to bending stem IV, p65 binding reorganizes nucleotides that comprise the low-affinity TERT binding site within stem–loop IV. PMID:22315458

Status and trends of the rainbow trout population in the Lees Ferry reach of the Colorado River downstream from Glen Canyon Dam, Arizona, 1991–2009

USGS Publications Warehouse

Makinster, Andrew S.; Persons, William R.; Avery, Luke A.

2011-01-01

The Lees Ferry reach of the Colorado River, a 25-kilometer segment of river located immediately downstream from Glen Canyon Dam, has contained a nonnative rainbow trout (Oncorhynchus mykiss) sport fishery since it was first stocked in 1964. The fishery has evolved over time in response to changes in dam operations and fish management. Long-term monitoring of the rainbow trout population downstream of Glen Canyon Dam is an essential component of the Glen Canyon Dam Adaptive Management Program. A standardized sampling design was implemented in 1991 and has changed several times in response to independent, external scientific-review recommendations and budget constraints. Population metrics (catch per unit effort, proportional stock density, and relative condition) were estimated from 1991 to 2009 by combining data collected at fixed sampling sites during this time period and at random sampling sites from 2002 to 2009. The validity of combining population metrics for data collected at fixed and random sites was confirmed by a one-way analysis of variance by fish-length class size. Analysis of the rainbow trout population metrics from 1991 to 2009 showed that the abundance of rainbow trout increased from 1991 to 1997, following implementation of a more steady flow regime, but declined from about 2000 to 2007. Abundance in 2008 and 2009 was high compared to previous years, which was likely the result of increased early survival caused by improved habitat conditions following the 2008 high-flow experiment at Glen Canyon Dam. Proportional stock density declined between 1991 and 2006, reflecting increased natural reproduction and large numbers of small fish in samples. Since 2001, the proportional stock density has been relatively stable. Relative condition varied with size class of rainbow trout but has been relatively stable since 1991 for fish smaller than 152 millimeters (mm), except for a substantial decrease in 2009. Relative condition was more variable for larger size classes, and substantial decreases were observed for the 152-304-mm size class in 2009 and 305-405-mm size class in 2008 that persisted into 2009.

Strengthening of certain types of arch dams at broad sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kaganov, G. M.; Volkov, V. I.; Uchevatkin, A. A.

2012-01-15

The problem of strengthening defective and damaged arch dams is formulated, and methodical calculations are performed to substantiate a set of structural and production measures permitting substantial improvement in the stress-strain state and an increase in the safety factor of the structure. Feasibility of practical implementation of the results is foreseen.

Strong influence of off-site symmetry positions of hydrogen atoms in ScH3 hcp phases

NASA Astrophysics Data System (ADS)

Pakornchote, T.; Bovornratanaraks, T.; Vannarat, S.; Pinsook, U.

2016-01-01

We investigate the wave-like arrangements of H atoms around metal plane (Hm) in the ScH3 hcp phase by using the ab-initio method. We found that only P63 / mmc, P 3 bar c 1, P63cm and P63 phases are energetically favorable. The wave-like arrangement allows the off-site symmetry positions of the H atoms, and leads to substantial changes in the pair distribution between Sc and H atoms which are associating with the changes in the electronic structure in such a way that the total energy is lowering. The symmetry breaking from P63mmc is also responsible for the band gap opening. In the P63 structure, the calculated band gap is 0.823 eV and 1.223 eV using GGA and sX-LDA functionals, respectively. This band gap can be compared with 1.7 eV derived from the optical measurement and 1.55 eV from the HSE06 calculation. Thus, the broken symmetry structures can be viewed as Peierls distortion of the P63 / mmc structure. Furthermore, we found that only the P63 structure is dynamically stable, unlike YH3 where the P63cm structure is also stable. The stability of P63 comes from sufficiently strong interactions between two neighboring H atoms at their off-site symmetry positions, i.e. near the metal plane and near the tetragonal site. The P63 phonon density of states is in good agreement with the data from the neutron experiment.

Phenological and physiological mechanisms underlying interannual variability of terrestrial net ecosystem production

NASA Astrophysics Data System (ADS)

Niu, S.; Luo, Y.; Hui, D.; Chen, J.

2013-12-01

The interannual variability (IAV) of atmospheric CO2 concentration varies substantial and is largely ascribed to IAV of terrestrial ecosystem carbon fluxes. However, we have limited understanding on the mechanisms that control the IAV on the carbon flux of terrestrial ecosystems. Here, we hypothesized that physiological and phonological processes regulate IAV significantly in terrestrial carbon uptake (i.e., net ecosystem production, NEP). To test this hypothesis, we analyzed eddy-covariance data from 24 sites with more than 8 years data in deciduous broadleaf forests (DBF), evergreen forests (EF), and grasslands (GRA) in the northern hemisphere. Ecosystem physiology is represented by the maximum carbon uptake capacity (NEPmax) in one year whereas phonology is represented by carbon uptake period (CUP). We found that yearly anomalies of CUP and NEPmax accounted for 40% and 60% separately, and 73% in combination, of the anomalies in annual NEP across all the 253 site-years, with their relative contributions varying among the sites. The IAV of CUP was determined by the anomalies of spring and autumn carbon uptake phenology, both of which were sensitive to climate changes but controlled by different environmental factors in different biomes. IAV of NEPmax was determined by summer precipitation anomalies in DBF and GRA. The results suggest that IAV of NEP is consistently co-determined by CUP and NEPmax anomalies among sites in the northern hemisphere. Overall, the mechanisms revealed by our study on NEP anomalies through changing in phenology and physiology contribute to predictive understanding of temporal dynamics of terrestrial carbon uptake.

Ecohydrology and tipping points in semiarid australian rangelands

NASA Astrophysics Data System (ADS)

Saco, P. M.; Azadi, S.; Moreno de las Heras, M.; Willgoose, G. R.

2017-12-01

Semiarid landscapes are often characterised by a spatially heterogeneous vegetation cover forming mosaics of patches with dense vegetation within bare soil. This patchy vegetation cover, which is linked to the healthy function of these ecosystems, is sensitive to human disturbances that can lead to degradation. Previous work suggests that vegetation loss below a critical value can lead to a sudden decrease in landscape functionality following threshold behaviour. The decrease in vegetation cover is linked to erosion and substantial water losses by increasing landscape hydrological connectivity. We study these interactions and the possible existence of tipping points in the Mulga land bioregion, by combining remote sensing observations and results from an eco-geomorphologic model to investigate changes in ecosystem connectivity and the existence of threshold behaviour. More than 30 sites were selected along a precipitation gradient spanning a range from approximately 250 to 500 mm annual rainfall. The analysis of vegetation patterns is derived from high resolution remote sensing images (IKONOS, QuickBird, Pleiades) and MODIS NDVI, which combined with local precipitation data is used to compute rainfall use efficiency to assess the ecosystem function. A critical tipping point associated to loss of vegetation cover appears in the sites with lower annual precipitation. We found that this tipping point behaviour decreases for sites with higher rainfall. We use the model to investigate the relation between structural and functional connectivity and the emergence of threshold behaviour for selected plots along this precipitation gradient. Both observations and modelling results suggest that sites with higher rainfall are more resilient to changes in surface connectivity. The implications for ecosystem resilience and land management are discussed

The Impact of Nature-Based Tourism on Bird Communities: A Case Study in Pallas-Yllästunturi National Park

NASA Astrophysics Data System (ADS)

Huhta, Esa; Sulkava, Pekka

2014-05-01

Nature-based tourism and recreation within and close to protected areas may have negative environmental impacts on biodiversity due to urban development, landscape fragmentation, and increased disturbance. We conducted a 3-year study of disturbances of birds induced by nature-based tourism over a recreational gradient in the Pallas-Yllästunturi National Park and its surroundings in northern Finland. Bird assemblages were studied in highly disturbed areas close to the park (a ski resort, villages, and accommodation areas) and in campfire sites, along hiking routes (recreational areas) and in a forest (control area) within the park. Compared with the forest, the disturbed urbanized areas had higher abundances of human-associated species, corvid species, cavity and building nesters, and edge species. The abundances of managed forest species were higher in campfire sites than in the forest. Hiking trails and campfire sites did not have a negative impact on open-nesting bird species. The most likely reason for this outcome is that most campfire sites were situated at forest edges; this species group prefers managed forests and forest edge as a breeding habitat. The abundances of virgin forest species did not differ among the areas studied. The results of the study suggest that the current recreation pressure has not caused substantial changes in the forest bird communities within the National Park. We suggest that the abundances of urban exploiter species could be used as indicators to monitor the level and changes of urbanization and recreational pressure at tourist destinations.

The impact of nature-based tourism on bird communities: a case study in Pallas-Yllästunturi National Park.

PubMed

Huhta, Esa; Sulkava, Pekka

2014-05-01

Nature-based tourism and recreation within and close to protected areas may have negative environmental impacts on biodiversity due to urban development, landscape fragmentation, and increased disturbance. We conducted a 3-year study of disturbances of birds induced by nature-based tourism over a recreational gradient in the Pallas-Yllästunturi National Park and its surroundings in northern Finland. Bird assemblages were studied in highly disturbed areas close to the park (a ski resort, villages, and accommodation areas) and in campfire sites, along hiking routes (recreational areas) and in a forest (control area) within the park. Compared with the forest, the disturbed urbanized areas had higher abundances of human-associated species, corvid species, cavity and building nesters, and edge species. The abundances of managed forest species were higher in campfire sites than in the forest. Hiking trails and campfire sites did not have a negative impact on open-nesting bird species. The most likely reason for this outcome is that most campfire sites were situated at forest edges; this species group prefers managed forests and forest edge as a breeding habitat. The abundances of virgin forest species did not differ among the areas studied. The results of the study suggest that the current recreation pressure has not caused substantial changes in the forest bird communities within the National Park. We suggest that the abundances of urban exploiter species could be used as indicators to monitor the level and changes of urbanization and recreational pressure at tourist destinations.

A spectroscopic method for observing the domain movement of the Rieske iron–sulfur protein

PubMed Central

Brugna, Myriam; Rodgers, Simon; Schricker, Anna; Montoya, Guillermo; Kazmeier, Michael; Nitschke, Wolfgang; Sinning, Irmgard

2000-01-01

The g-tensor orientation of the chemically reduced Rieske cluster in cytochrome bc1 complex from Rhodovulum sulfidophilum with respect to the membrane was determined in the presence and absence of inhibitors and in the presence of oxidized and reduced quinone in the quinol-oxidizing-site (Qo-site) by EPR on two-dimensionally ordered samples. Almost identical orientations were observed when oxidized or reduced quinone, stigmatellin, or 5-(n-undecyl)-6-hydroxy-4,7-dioxobenzothiazole was present. Occupancy of the Qo-site by myxothiazole induced appearance of a minority population with a substantially differing conformation and presence of E-β-methoxyacrylate-stilbene significantly reduced the contribution of the major conformation observed in the other cases. Furthermore, when the oxidized iron–sulfur cluster was reduced at cryogenic temperatures by the products of radiolysis, the orientation of its magnetic axes was found to differ significantly from that of the chemically reduced center. The “irradiation-induced” conformation converts to that of the chemically reduced center after thawing of the sample. These results confirm the effects of Qo-site inhibitors on the equilibrium conformation of the Rieske iron–sulfur protein and provide evidence for a reversible redox-influenced interconversion between conformational states. Moreover, the data obtained with the iron—sulfur protein demonstrate that the conformation of “EPR-inaccessible” reduction states of redox centers can be studied by inducing changes of redox state at cryogenic temperatures. This technique appears applicable to a wide range of comparable electron transfer systems performing redox-induced conformational changes. PMID:10681446

Catchment-mediated atmospheric nitrogen deposition drives ecological change in two alpine lakes in SE Tibet.

PubMed

Hu, Zhujun; Anderson, Nicholas John; Yang, Xiangdong; McGowan, Suzanne

2014-05-01

The south-east margin of Tibet is highly sensitive to global environmental change pressures, in particular, high contemporary reactive nitrogen (Nr) deposition rates (ca. 40 kg ha(-1)  yr(-1) ), but the extent and timescale of recent ecological change is not well prescribed. Multiproxy analyses (diatoms, pigments and geochemistry) of (210) Pb-dated sediment cores from two alpine lakes in Sichuan were used to assess whether they have undergone ecological change comparable to those in Europe and North America over the last two centuries. The study lakes have contrasting catchment-to-lake ratios and vegetation cover: Shade Co has a relatively larger catchment and denser alpine shrub than Moon Lake. Both lakes exhibited unambiguous increasing production since the late 19th to early 20th. Principle component analysis was used to summarize the trends of diatom and pigment data after the little ice age (LIA). There was strong linear change in biological proxies at both lakes, which were not consistent with regional temperature, suggesting that climate is not the primary driver of ecological change. The multiproxy analysis indicated an indirect ecological response to Nr deposition at Shade Co mediated through catchment processes since ca. 1930, while ecological change at Moon Lake started earlier (ca. 1880) and was more directly related to Nr deposition (depleted δ(15) N). The only pronounced climate effect was evidenced by changes during the LIA when photoautotrophic groups shifted dramatically at Shade Co (a 4-fold increase in lutein concentration) and planktonic diatom abundance declined at both sites because of longer ice cover. The substantial increases in aquatic production over the last ca. 100 years required a substantial nutrient subsidy and the geochemical data point to a major role for Nr deposition although dust cannot be excluded. The study also highlights the importance of lake and catchment morphology for determining the response of alpine lakes to recent global environmental forcing. © 2013 John Wiley & Sons Ltd.

24 CFR 941.606 - Proposal.

Code of Federal Regulations, 2011 CFR

2011-04-01

...) Life cycle analysis. For new construction and substantial rehabilitation, the criteria to be used in equipping the proposed development with heating and cooling systems, which shall include a life-cycle cost... the proposed site, site plan, and neighborhood. (f) Market analysis. An analysis of the projected...

Evaluation of methods to limit the time taken to investigate crash sites.

DOT National Transportation Integrated Search

2005-06-01

Highway crashes have significant direct and indirect costs associated with them. Substantial sources of indirect costs are the congestion and delays that result from lane blockages or road closures while the crash is being investigated and the site c...

Climate change, food, water and population health in China

PubMed Central

Berry, Helen L; Ebi, Kristie; Bambrick, Hilary; Hu, Wenbiao; Green, Donna; Hanna, Elizabeth; Wang, Zhiqiang; Butler, Colin D

2016-01-01

Abstract Anthropogenic climate change appears to be increasing the frequency, duration and intensity of extreme weather events. Such events have already had substantial impacts on socioeconomic development and population health. Climate change’s most profound impacts are likely to be on food, health systems and water. This paper explores how climate change will affect food, human health and water in China. Projections indicate that the overall effects of climate change, land conversion and reduced water availability could reduce Chinese food production substantially – although uncertainty is inevitable in such projections. Climate change will probably have substantial impacts on water resources – e.g. changes in rainfall patterns and increases in the frequencies of droughts and floods in some areas of China. Such impacts would undoubtedly threaten population health and well-being in many communities. In the short-term, population health in China is likely to be adversely affected by increases in air temperatures and pollution. In the medium to long term, however, the indirect impacts of climate change – e.g. changes in the availability of food, shelter and water, decreased mental health and well-being and changes in the distribution and seasonality of infectious diseases – are likely to grow in importance. The potentially catastrophic consequences of climate change can only be avoided if all countries work together towards a substantial reduction in the emission of so-called greenhouse gases and a substantial increase in the global population’s resilience to the risks of climate variability and change. PMID:27843166

SP transcription factor paralogs and DNA-binding sites coevolve and adaptively converge in mammals and birds.

PubMed

Yokoyama, Ken Daigoro; Pollock, David D

2012-01-01

Functional modification of regulatory proteins can affect hundreds of genes throughout the genome, and is therefore thought to be almost universally deleterious. This belief, however, has recently been challenged. A potential example comes from transcription factor SP1, for which statistical evidence indicates that motif preferences were altered in eutherian mammals. Here, we set out to discover possible structural and theoretical explanations, evaluate the role of selection in SP1 evolution, and discover effects on coregulatory proteins. We show that SP1 motif preferences were convergently altered in birds as well as mammals, inducing coevolutionary changes in over 800 regulatory regions. Structural and phylogenic evidence implicates a single causative amino acid replacement at the same SP1 position along both lineages. Furthermore, paralogs SP3 and SP4, which coregulate SP1 target genes through competitive binding to the same sites, have accumulated convergent replacements at the homologous position multiple times during eutherian and bird evolution, presumably to preserve competitive binding. To determine plausibility, we developed and implemented a simple model of transcription factor and binding site coevolution. This model predicts that, in contrast to prevailing beliefs, even small selective benefits per locus can drive concurrent fixation of transcription factor and binding site mutants under a broad range of conditions. Novel binding sites tend to arise de novo, rather than by mutation from ancestral sites, a prediction substantiated by SP1-binding site alignments. Thus, multiple lines of evidence indicate that selection has driven convergent evolution of transcription factors along with their binding sites and coregulatory proteins.

SP Transcription Factor Paralogs and DNA-Binding Sites Coevolve and Adaptively Converge in Mammals and Birds

PubMed Central

Yokoyama, Ken Daigoro; Pollock, David D.

2012-01-01

Functional modification of regulatory proteins can affect hundreds of genes throughout the genome, and is therefore thought to be almost universally deleterious. This belief, however, has recently been challenged. A potential example comes from transcription factor SP1, for which statistical evidence indicates that motif preferences were altered in eutherian mammals. Here, we set out to discover possible structural and theoretical explanations, evaluate the role of selection in SP1 evolution, and discover effects on coregulatory proteins. We show that SP1 motif preferences were convergently altered in birds as well as mammals, inducing coevolutionary changes in over 800 regulatory regions. Structural and phylogenic evidence implicates a single causative amino acid replacement at the same SP1 position along both lineages. Furthermore, paralogs SP3 and SP4, which coregulate SP1 target genes through competitive binding to the same sites, have accumulated convergent replacements at the homologous position multiple times during eutherian and bird evolution, presumably to preserve competitive binding. To determine plausibility, we developed and implemented a simple model of transcription factor and binding site coevolution. This model predicts that, in contrast to prevailing beliefs, even small selective benefits per locus can drive concurrent fixation of transcription factor and binding site mutants under a broad range of conditions. Novel binding sites tend to arise de novo, rather than by mutation from ancestral sites, a prediction substantiated by SP1-binding site alignments. Thus, multiple lines of evidence indicate that selection has driven convergent evolution of transcription factors along with their binding sites and coregulatory proteins. PMID:23019068

Bioinorganic Chemistry of Parkinson's Disease: Affinity and Structural Features of Cu(I) Binding to the Full-Length β-Synuclein Protein.

PubMed

Miotto, Marco C; Pavese, Mayra D; Quintanar, Liliana; Zweckstetter, Markus; Griesinger, Christian; Fernández, Claudio O

2017-09-05

Alterations in the levels of copper in brain tissue and formation of α-synuclein (αS)-copper complexes might play a key role in the amyloid aggregation of αS and the onset of Parkinson's disease (PD). Recently, we demonstrated that formation of the high-affinity Cu(I) complex with the N-terminally acetylated form of the protein αS substantially increases and stabilizes local conformations with α-helical secondary structure and restricted motility. In this work, we performed a detailed NMR-based structural characterization of the Cu(I) complexes with the full-length acetylated form of its homologue β-synuclein (βS), which is colocalized with αS in vivo and can bind copper ions. Our results show that, similarly to αS, the N-terminal region of βS constitutes the preferential binding interface for Cu(I) ions, encompassing two independent and noninteractive Cu(I) binding sites. According to these results, βS binds the metal ion with higher affinity than αS, in a coordination environment that involves the participation of Met-1, Met-5, and Met-10 residues (site 1). Compared to αS, the shift of His from position 50 to 65 in the N-terminal region of βS does not change the Cu(I) affinity features at that site (site 2). Interestingly, the formation of the high-affinity βS-Cu(I) complex at site 1 in the N-terminus promotes a short α-helix conformation that is restricted to the 1-5 segment of the AcβS sequence, which differs with the substantial increase in α-helix conformations seen for N-terminally acetylated αS upon Cu(I) complexation. Our NMR data demonstrate conclusively that the differences observed in the conformational transitions triggered by Cu(I) binding to AcαS and AcβS find a correlation at the level of their backbone dynamic properties; added to the potential biological implications of these findings, this fact opens new avenues of investigations into the bioinorganic chemistry of PD.

Effect of mechanical site preparation treatments on oak survival in a retired field afforestation effort -- first-year results

Treesearch

Andrew B. Self; Andrew W. Ezell; Damon B. Hollis; Derek. Alkire

2011-01-01

Mechanical site preparation is frequently proposed to alleviate poor soil conditions when afforesting retired agricultural fields. Without management of soil problems, oak seedlings planted in these areas may exhibit poor survival. While mechanical site preparation methods currently employed in hardwood afforestation are proven, there is a substantial void in research...

Interactions between rates of temperature change and acclimation affect latitudinal patterns of warming tolerance

PubMed Central

Allen, Jessica L; Chown, Steven L; Janion-Scheepers, Charlene; Clusella-Trullas, Susana

2016-01-01

Abstract Critical thermal limits form an increasing component of the estimation of impacts of global change on ectotherms. Whether any consistent patterns exist in the interactive effects of rates of temperature change (or experimental ramping rates) and acclimation on critical thermal limits and warming tolerance (one way of assessing sensitivity to climate change) is, however, far from clear. Here, we examine the interacting effects of ramping rate and acclimation on the critical thermal maxima (CTmax) and minima (CTmin) and warming tolerance of six species of springtails from sub-tropical, temperate and polar regions. We also provide microhabitat temperatures from 26 sites spanning 5 years in order to benchmark environmentally relevant rates of temperature change. Ramping rate has larger effects than acclimation on CTmax, but the converse is true for CTmin. Responses to rate and acclimation effects are more consistent among species for CTmax than for CTmin. In the latter case, interactions among ramping rate and acclimation are typical of polar species, less marked for temperate ones, and reduced in species from the sub-tropics. Ramping rate and acclimation have substantial effects on estimates of warming tolerance, with the former being more marked. At the fastest ramping rates (>1.0°C/min), tropical species have estimated warming tolerances similar to their temperate counterparts, whereas at slow ramping rates (<0.4°C/min) the warming tolerance is much reduced in tropical species. Rates of temperate change in microhabitats relevant to the springtails are typically <0.05°C/min, with rare maxima of 0.3–0.5°C/min depending on the site. These findings emphasize the need to consider the environmental setting and experimental conditions when assessing species’ vulnerability to climate change using a warming tolerance approach. PMID:27933165

Interactions between rates of temperature change and acclimation affect latitudinal patterns of warming tolerance.

PubMed

Allen, Jessica L; Chown, Steven L; Janion-Scheepers, Charlene; Clusella-Trullas, Susana

2016-01-01

Critical thermal limits form an increasing component of the estimation of impacts of global change on ectotherms. Whether any consistent patterns exist in the interactive effects of rates of temperature change (or experimental ramping rates) and acclimation on critical thermal limits and warming tolerance (one way of assessing sensitivity to climate change) is, however, far from clear. Here, we examine the interacting effects of ramping rate and acclimation on the critical thermal maxima (CTmax) and minima (CTmin) and warming tolerance of six species of springtails from sub-tropical, temperate and polar regions. We also provide microhabitat temperatures from 26 sites spanning 5 years in order to benchmark environmentally relevant rates of temperature change. Ramping rate has larger effects than acclimation on CTmax, but the converse is true for CTmin. Responses to rate and acclimation effects are more consistent among species for CTmax than for CTmin. In the latter case, interactions among ramping rate and acclimation are typical of polar species, less marked for temperate ones, and reduced in species from the sub-tropics. Ramping rate and acclimation have substantial effects on estimates of warming tolerance, with the former being more marked. At the fastest ramping rates (>1.0°C/min), tropical species have estimated warming tolerances similar to their temperate counterparts, whereas at slow ramping rates (<0.4°C/min) the warming tolerance is much reduced in tropical species. Rates of temperate change in microhabitats relevant to the springtails are typically <0.05°C/min, with rare maxima of 0.3-0.5°C/min depending on the site. These findings emphasize the need to consider the environmental setting and experimental conditions when assessing species' vulnerability to climate change using a warming tolerance approach.

Linked Climatic, Environmental, and Societal Changes in the Lower Yellow River Area during the Neolithic-Bronze Age Transition

NASA Astrophysics Data System (ADS)

Yu, S. Y.

2017-12-01

Understanding human-environment interactions during times of large and rapid climatic changes in the second half of the Holocene may deepen our insight into human adaptation and resilience against potential climate anomalies in the future. However, the drivers and societal responses tend to be different from area to area, and the degree and nature of this link are still a matter of debate. Flooding sediments preserved within the cultural stratigraphical context at archaeological sites in the lower Yellow River area may offer an ideal framework for evaluating the association between evolution of Neolithic cultures and climate fluctuations. Here, we present evidence from a mound site for the prevalence of extreme overbank floods during the Neolithic-Bronze Age transition most likely triggered by excessive summer precipitation in the Yellow River valley when prolonged weak El Niño condition prevailed. Repeated flooding during around 4000-3500 cal yr BP substantially modified the floodplain landscape, thereby driving people to disperse to areas dominated by the Erlitou culture and eventually giving rise to a state-level society in central China historiographically identified as the Xia Dynasty. Changes in the drainage network due to repeated flooding also exerted a profound impact on the rice farming-based communities centered in the region of the floods. Our results provide a precise past analogue of the linked climatic, environmental, and societal changes at a time when human societies were evolving into a hierarchy similar to those of today.

Plasticity of orientation preference maps in the visual cortex of adult cats.

PubMed

Godde, Ben; Leonhardt, Ralph; Cords, Sven M; Dinse, Hubert R

2002-04-30

In contrast to the high degree of experience-dependent plasticity usually exhibited by cortical representational maps, a number of experiments performed in visual cortex suggest that the basic layout of orientation preference maps is only barely susceptible to activity-dependent modifications. In fact, most of what we know about activity-dependent plasticity in adults comes from experiments in somatosensory, auditory, or motor cortex. Applying a stimulation protocol that has been proven highly effective in other cortical areas, we demonstrate here that enforced synchronous cortical activity induces major changes of orientation preference maps (OPMs) in adult cats. Combining optical imaging of intrinsic signals and electrophysiological single-cell recordings, we show that a few hours of intracortical microstimulation (ICMS) lead to an enlargement of the cortical representational zone at the ICMS site and an extensive restructuring of the entire OPM layout up to several millimeters away, paralleled by dramatic changes of pinwheel numbers and locations. At the single-cell level, we found that the preferred orientation was shifted toward the orientation of the ICMS site over a region of up to 4 mm. Our results show that manipulating the synchronicity of cortical activity locally without invoking training, attention, or reinforcement, OPMs undergo large-scale reorganization reminiscent of plastic changes observed for nonvisual cortical maps. However, changes were much more widespread and enduring. Such large-scale restructuring of the visual cortical networks indicates a substantial capability for activity-dependent plasticity of adult visual cortex and may provide the basis for cognitive learning processes.

Assessment of extreme flood events in a changing climate for a long-term planning of socio-economic infrastructure in the Russian Arctic

NASA Astrophysics Data System (ADS)

Shevnina, Elena; Kourzeneva, Ekaterina; Kovalenko, Viktor; Vihma, Timo

2017-05-01

Climate warming has been more acute in the Arctic than at lower latitudes and this tendency is expected to continue. This generates major challenges for economic activity in the region. Among other issues is the long-term planning and development of socio-economic infrastructure (dams, bridges, roads, etc.), which require climate-based forecasts of the frequency and magnitude of detrimental flood events. To estimate the cost of the infrastructure and operational risk, a probabilistic form of long-term forecasting is preferable. In this study, a probabilistic model to simulate the parameters of the probability density function (PDF) for multi-year runoff based on a projected climatology is applied to evaluate changes in extreme floods for the territory of the Russian Arctic. The model is validated by cross-comparison of the modelled and empirical PDFs using observations from 23 sites located in northern Russia. The mean values and coefficients of variation (CVs) of the spring flood depth of runoff are evaluated under four climate scenarios, using simulations of six climate models for the period 2010-2039. Regions with substantial expected changes in the means and CVs of spring flood depth of runoff are outlined. For the sites located within such regions, it is suggested to account for the future climate change in calculating the maximal discharges of rare occurrence. An example of engineering calculations for maximal discharges with 1 % exceedance probability is provided for the Nadym River at Nadym.

A comparison of campfire impacts and policies in seven protected areas

USGS Publications Warehouse

Reid, S.E.; Marion, J.L.

2005-01-01

Using resource-monitoring data from seven protected areas, the effectiveness of three campfire policies-campfire ban, designated campfires, and unregulated campfires-were assessed based on the number of fire sites and the amount of tree damage. Results indicate that unregulated campfire policies permitted substantial numbers of fire sites and tree damage in campsites, although fire bans did not eliminate or even substantially decrease these problems. A designated campfire policy was effective in decreasing number of fire sites, but little difference was found among policies regarding tree damage. Given the importance of campfires to visitor experiences, campfire prohibitions could be viewed as unnecessarily restrictive based on their limited success in preventing resource damage. Conclusions encourage protected-area managers to consider designated campfire policies and prohibitions on axes, hatchets, and saws to better meet resource protection and visitor experience mandates.

Removal site evaluation report for the Isotope Facilities at Oak Ridge National Laboratory, Oak Ridge, Tennessee

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

This removal site evaluation (RmSE) report of the Isotope Facilities at Oak Ridge National Laboratory (ORNL) was prepared to provide the Environmental Restoration Program with information necessary to evaluate whether hazardous and/or radiological contaminants in and around the Isotopes Facility pose a substantial risk to human health or the environment and if remedial site evaluations (RSEs) or removal actions are required. The scope of the project included: (1) a review of historical evidence regarding operations and use of the facility; (2) interviews with facility personnel concerning current and past operating practices; (3) a site inspection; and (4) identification of hazardmore » areas requiring maintenance, removal, or remedial actions. The results of RmSE indicate that no substantial risks exist from contaminants present in the Isotope Facilities because adequate controls and practices exist to protect human health and the environment. The recommended correction from the RmSE are being conducted as maintenance actions; accordingly, this RmSE is considered complete and terminated.« less

Mössbauer investigations to characterize Fe lattice sites in sheet silicates and Peru Basin deep-sea sediments

NASA Astrophysics Data System (ADS)

Lougear, André; König, Iris; Trautwein, Alfred X.; Suess, Erwin

A procedure to classify different Fe lattice sites, i.e., OH-group geometries, in the clay mineral content of deep-sea sediments was developed using Mössbauer spectroscopy at low temperature (77 K). This speciation is of interest with regard to the redox behavior, reactivity and color of marine sediments, since substantial iron redox transitions (associated with sediment color change) have been documented for the structural sheet silicate iron. Lattice site classification was achieved for the Fe(II) fraction, all of which is structural clay Fe(II) in the sediments under investigation. Whereas the major part of the Fe(III) is structural clay iron as well, there is a small Fe(III) fraction in oxide minerals. Therefore, further elaboration of the procedure would be required to also achieve lattice site classification for the Fe(III) fraction. Analysis of the Mössbauer spectra is based on computer fits, the input parameters of which were derived from a separate study of Fe(II)-rich pure chlorites. The procedure of classification is qualified to investigate, e.g., in laboratory experiments, the site-specific reaction rates and the effects on sediment color of iron redox transitions in the sheet silicate content of sediments. The new skills were successfully applied in environmental impact studies on the mining of polymetallic nodules from the Peru Basin deep-sea floor.

Structure—Function relationships of equine menisci

PubMed Central

Peham, Christian; Ade, Nicole; Dürr, Julia; Handschuh, Stephan; Schramel, Johannes Peter; Vogl, Claus; Walles, Heike

2018-01-01

Meniscal pathologies are among the most common injuries of the femorotibial joint in both human and equine patients. Pathological forces and ensuing injuries of the cranial horn of the equine medial meniscus are considered analogous to those observed in the human posterior medial horn. Biomechanical properties of human menisci are site- and depth- specific. However, the influence of equine meniscus topography and composition on its biomechanical properties is yet unknown. A better understanding of equine meniscus composition and biomechanics could advance not only veterinary therapies for meniscus degeneration or injuries, but also further substantiate the horse as suitable translational animal model for (human) meniscus tissue engineering. Therefore, the aim of this study was to investigate the composition and structure of the equine knee meniscus in a site- and age-specific manner and their relationship with potential site-specific biomechanical properties. The meniscus architecture was investigated histologically. Biomechanical testing included evaluation of the shore hardness (SH), stiffness and energy loss of the menisci. The SH was found to be subjected to both age and site-specific changes, with an overall higher SH of the tibial meniscus surface and increase in SH with age. Stiffness and energy loss showed neither site nor age related significant differences. The macroscopic and histologic similarities between equine and human menisci described in this study, support continued research in this field. PMID:29522550

Effect of wildfires on physicochemical changes of watershed dissolved organic matter.

PubMed

Revchuk, Alex D; Suffet, I H

2014-04-01

Physicochemical characterization of dissolved organic carbon (DOC) provides essential data to describe watershed characteristics after drastic changes caused by wildfires. Post-fire watershed behavior is important for water source selection, management, and drinking water treatment optimization. Using ash and other burned vegetation fragments, a leaching procedure was implemented to describe physicochemical changes to watershed DOC caused by wildfires. Samples were collected after the 2007 and 2009 wildfires near Santa Barbara, California. Substantial differences in size distribution (measured by ultrafiltration), polarity (measured by polarity rapid assessment method), and the origin of leached DOC (measured by fluorescence) were observed between burned and unburned sites. Recently burned ash had 10 times the DOC leaching potential, and was dominated by large size fragments, compared to weathered 2-year-old ash. Charged DOC fractions were found to positively correlate with DOC size, whereas hydrophobic and hydrophilic DOC fractions were not. Proteins were only observed in recently burned ash and were indicative of recent post-fire biological activity.

Historic macrophyte development in Par Pond

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grace, J.B.

1985-08-01

Aerial photographs from 1975, 1980, and 1983 were examined to evaluate the changes that have occurred in the wetland vegetation of Par Pond, a reactor-cooling reservoir. Evaluation of the aerial photographs was based on comparisons with ground-level vegetation maps made during July 1984. Comparisons of photographs from August and December of 1983 revealed the main seasonal change in the aerial coverage of wetland vegetation to be the wintertime loss of non-persistent emergent species such as Nelumbo lutea and Nymphaea odorata. Comparisons between September 1980 and August 1983 revealed that the lakeward extent of non-persistent macrophytes has increased by an averagemore » of 8.2 m, though not all sites have changed equally. For persistent macrophytes (principally Typha), the average increase in lakeward extent between December 1975 and August 1983 was 3.48 m. The extensive development of wetland vegetation in Par Pond as well as the substantial spread of vegetation over only a few years time indicates the high suitability of this habitat for the growth of wetland plants.« less

Impacts of climatic change on forest structure in the Midwestern Great Lakes region: An integrated gap model and geographical information system (GIS) approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eman, J.L.; Randolph, J.C.; Fan, Weihong

The transient effects of an 80-year climate change scenario on 56 tree species are evaluated within the regional forested landscape matrix of Wisconsin, Michigan, Illinois, Indiana, and Ohio. The JABOWA-II forest growth model was integrated with a GIS housing several federally-produced databases which were vital for input file development. A 4km{sup 2} resolution enabled high parameter specificity for each of the 54,345 representative 100m{sup 2} plots. Ten iterations of simulated growth response at each site followed model calibration. Changes in relative regional dominance and shifts in population centroids over two periods (1981-2020 and 2020-2060) indicated that most responses were species-specific.more » Notable among these were the substantial dominance increases of Populus tremuloides and Quercus alba from 1981-2020. Shared response patterns included conifers` centroid shifts to the northwest and overall dominance reductions.« less

MODIS EVI-based net primary production in the Sahel 2000-2014

NASA Astrophysics Data System (ADS)

Ardö, Jonas; Tagesson, Torbern; Jamali, Sadegh; Khatir, Abdelrahman

2018-03-01

Africa is facing resource problems due to increasing demand combined with potential climate-induced changes in supply. Here we aim to quantify resources in terms of net primary production (NPP [g C m-2 yr-1]) of vegetation in the Sahel region for 2000-2014. Using time series of the enhanced vegetation index (EVI) from MODIS, NPP was estimated for the Sahel region with a 500 × 500 m spatial resolution and 8-day temporal resolution. The estimates were based on local eddy covariance flux measurements from six sites in the Sahel region and the carbon use efficiency originating from a dynamic vegetation model. No significant NPP change was found for the Sahel as a region but, for sub-regions, significant changes, both increasing and decreasing, were observed. Substantial uncertainties related to NPP estimates and the small availability of evaluation data makes verification difficult. The simplicity of the methodology used, dependent on earth observation only, is considered an advantage.

Non-climatic constraints on upper elevational plant range expansion under climate change

PubMed Central

Brown, Carissa D.; Vellend, Mark

2014-01-01

We are limited in our ability to predict climate-change-induced range shifts by our inadequate understanding of how non-climatic factors contribute to determining range limits along putatively climatic gradients. Here, we present a unique combination of observations and experiments demonstrating that seed predation and soil properties strongly limit regeneration beyond the upper elevational range limit of sugar maple, a tree species of major economic importance. Most strikingly, regeneration beyond the range limit occurred almost exclusively when seeds were experimentally protected from predators. Regeneration from seed was depressed on soil from beyond the range edge when this soil was transplanted to sites within the range, with indirect evidence suggesting that fungal pathogens play a role. Non-climatic factors are clearly in need of careful attention when attempting to predict the biotic consequences of climate change. At minimum, we can expect non-climatic factors to create substantial time lags between the creation of more favourable climatic conditions and range expansion. PMID:25253462

Interaction of flavonols with human serum albumin: a biophysical study showing structure-activity relationship and enhancement when coated on silver nanoparticles.

PubMed

Das, Pratyusa; Chaudhari, Sunil Kumar; Das, Asmita; Kundu, Somashree; Saha, Chabita

2018-04-24

Binding affinities of flavonols namely quercetin, myricetin, and kaempferol to human serum albumin (HSA) were determined fluorimetrically and the order was observed to be myricetin > quercetin > kaempferol demonstrating structure-activity relationship. Quercetin-coated silver nanoparticles (AgNPs) show higher binding affinity to HSA compared to free quercetin with binding constants 6.04 × 10 7  M -1 and 4.2 × 10 6  M -1 , respectively. Using site-specific markers it is concluded that free quercetin and that coated on AgNPs bind at different sites. Significant structural changes in circular dichroism (CD) spectra of HSA were recorded with quercetin-coated AgNPs compared to free quercetin. These results were further substantiated by time-resolved fluorescence spectroscopy where fluorescence life time of the tryptophan residue in HSA-quercetin-coated AgNPs complex decreased to 3.63 ns from 4.22 ns in HSA-quercetin complex. Isothermal calorimetric studies reveal two binding modes for quercetin-coated AgNPs and also higher binding constants compared to free quercetin. These higher binding affinities are attributed to altered properties of quercetin when coated on AgNPs enabling it to reach the binding sites other than site II where free quercetin mainly binds.

Impact of naturally leaking carbon dioxide on soil properties and ecosystems in the Qinghai-Tibet plateau.

PubMed

Zhao, Xiaohong; Deng, Hongzhang; Wang, Wenke; Han, Feng; Li, Chunrong; Zhang, Hui; Dai, Zhenxue

2017-06-07

One of the major concerns for CO 2 capture and storage (CCS) is the potential risk of CO 2 leakage from storage reservoirs on the shallow soil property and vegetation. This study utilizes a naturally occurring CO 2 leaking site in the Qinghai-Tibet Plateau to analog a "leaking CCS site". Our observations from this site indicates that long-term CO 2 invasion in the vadose zone results in variations of soil properties, such as pH fluctuation, slight drop of total organic carbon, reduction of nitrogen and phosphorus, and concentration changes of soluble ions. Simultaneously, XRD patterns of the soil suggest that crystallization of soil is enhanced and mineral contents of calcite and anorthite in soil are increased substantially. Parts of the whole ecosystem such as natural wild plants, soil dwelling animals and microorganisms in shallow soil are affected as well. Under a moderate CO 2 concentration (less than 110000 ppm), wild plant growth and development are improved, while an intensive CO 2 flux over 112000 ppm causes adverse effects on the plant growth, physiological and biochemical system of plants, and crop quality of wheat. Results of this study provide valuable insight for understanding the possible environmental impacts associated with potential CO 2 leakage into shallow sediments at carbon sequestration sites.

Landsat 4 Thematic Mapper calibration update

USGS Publications Warehouse

Helder, Dennis L.; Malla, Rimy; Mettler, Cory J.; Markham, Brian L.; Micijevic, Esad

2012-01-01

The Landsat 4 Thematic Mapper (TM) collected imagery of the Earth's surface from 1982 to 1993. Although largely overshadowed by Landsat 5 which was launched in 1984, Landsat 4 TM imagery extends the TM-based record of the Earth back to 1982 and also substantially supplements the image archive collected by Landsat 5. To provide a consistent calibration record for the TM instruments, Landsat 4 TM was cross-calibrated to Landsat 5 using nearly simultaneous overpass imagery of pseudo-invariant calibration sites (PICS) in the time period of 1988-1990. To determine if the radiometric gain of Landsat 4 had changed over its lifetime, time series from two PICS locations (a Saharan site known as Libya 4 and a site in southwest North America, commonly referred to as the Sonoran Desert site) were developed. The results indicated that Landsat 4 had been very stable over its lifetime, with no discernible degradation in sensor performance in all reflective bands except band 1. In contrast, band 1 exhibited a 12% decay in responsivity over the lifetime of the instrument. Results from this paper have been implemented at USGS EROS, which enables users of Landsat TM data sets to obtain consistently calibrated data from Landsat 4 and 5 TM as well as Landsat 7 ETM+ instruments.

Legacy effects overwhelm the short-term effects of exotic plant invasion and restoration on soil microbial community structure, enzyme activities, and nitrogen cycling.

PubMed

Elgersma, Kenneth J; Ehrenfeld, Joan G; Yu, Shen; Vor, Torsten

2011-11-01

Plant invasions can have substantial consequences for the soil ecosystem, altering microbial community structure and nutrient cycling. However, relatively little is known about what drives these changes, making it difficult to predict the effects of future invasions. In addition, because most studies compare soils from uninvaded areas to long-established dense invasions, little is known about the temporal dependence of invasion impacts. We experimentally manipulated forest understory vegetation in replicated sites dominated either by exotic Japanese barberry (Berberis thunbergii), native Viburnums, or native Vacciniums, so that each vegetation type was present in each site-type. We compared the short-term effect of vegetation changes to the lingering legacy effects of the previous vegetation type by measuring soil microbial community structure (phospholipid fatty acids) and function (extracellular enzymes and nitrogen mineralization). We also replaced the aboveground litter in half of each plot with an inert substitute to determine if changes in the soil microbial community were driven by aboveground or belowground plant inputs. We found that after 2 years, the microbial community structure and function was largely determined by the legacy effect of the previous vegetation type, and was not affected by the current vegetation. Aboveground litter removal had only weak effects, suggesting that changes in the soil microbial community and nutrient cycling were driven largely by belowground processes. These results suggest that changes in the soil following either invasion or restoration do not occur quickly, but rather exhibit long-lasting legacy effects from previous belowground plant inputs.

Stigmatellin Probes the Electrostatic Potential in the QB Site of the Photosynthetic Reaction Center

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gerencsér, László; Boros, Bogáta; Derrien, Valerie

2015-01-01

The electrostatic potential in the secondary quinone (QB) binding site of the reaction center (RC) of the photosynthetic bacterium Rhodobacter sphaeroides determines the rate and free energy change (driving force) of electron transfer to QB. It is controlled by the ionization states of residues in a strongly interacting cluster around the QB site. Reduction of the QB induces change of the ionization states of residues and binding of protons from the bulk. Stigmatellin, an inhibitor of the mitochondrial and photosynthetic respiratory chain, has been proven to be a unique voltage probe of the QB binding pocket. It binds to themore » QB site with high affinity, and the pK value of its phenolic group monitors the local electrostatic potential with high sensitivity. Investigations with different types of detergent as a model system of isolated RC revealed that the pK of stigmatellin was controlled overwhelmingly by electrostatic and slightly by hydrophobic interactions. Measurements showed a high pK value (>11) of stigmatellin in the QB pocket of the dark-state wild-type RC, indicating substantial negative potential. When the local electrostatics of the QB site was modulated by a single mutation, L213Asp/Ala, or double mutations, L213Asp-L212Glu/Ala-Ala (AA), the pK of stigmatellin dropped to 7.5 and 7.4, respectively, which corresponds to a >210 mV increase in the electrostatic potential relative to the wild-type RC. This significant pK drop (DpK > 3.5) decreased dramatically to (DpK > 0.75) in the RC of the compensatory mutant (AAþM44Asn/AAþM44Asp). Our results indicate that the L213Asp is the most important actor in the control of the electrostatic potential in the QB site of the dark-state wild-type RC, in good accordance with conclusions of former studies using theoretical calculations or light-induced charge recombination assay.« less

An introduction to the Australian and New Zealand flux tower network - OzFlux

NASA Astrophysics Data System (ADS)

Beringer, Jason; Hutley, Lindsay B.; McHugh, Ian; Arndt, Stefan K.; Campbell, David; Cleugh, Helen A.; Cleverly, James; Resco de Dios, Víctor; Eamus, Derek; Evans, Bradley; Ewenz, Cacilia; Grace, Peter; Griebel, Anne; Haverd, Vanessa; Hinko-Najera, Nina; Huete, Alfredo; Isaac, Peter; Kanniah, Kasturi; Leuning, Ray; Liddell, Michael J.; Macfarlane, Craig; Meyer, Wayne; Moore, Caitlin; Pendall, Elise; Phillips, Alison; Phillips, Rebecca L.; Prober, Suzanne M.; Restrepo-Coupe, Natalia; Rutledge, Susanna; Schroder, Ivan; Silberstein, Richard; Southall, Patricia; Yee, Mei Sun; Tapper, Nigel J.; van Gorsel, Eva; Vote, Camilla; Walker, Jeff; Wardlaw, Tim

2016-10-01

OzFlux is the regional Australian and New Zealand flux tower network that aims to provide a continental-scale national research facility to monitor and assess trends, and improve predictions, of Australia's terrestrial biosphere and climate. This paper describes the evolution, design, and current status of OzFlux as well as provides an overview of data processing. We analyse measurements from all sites within the Australian portion of the OzFlux network and two sites from New Zealand. The response of the Australian biomes to climate was largely consistent with global studies except that Australian systems had a lower ecosystem water-use efficiency. Australian semi-arid/arid ecosystems are important because of their huge extent (70 %) and they have evolved with common moisture limitations. We also found that Australian ecosystems had a similar radiation-use efficiency per unit leaf area compared to global values that indicates a convergence toward a similar biochemical efficiency. The two New Zealand sites represented extremes in productivity for a moist temperate climate zone, with the grazed dairy farm site having the highest GPP of any OzFlux site (2620 gC m-2 yr-1) and the natural raised peat bog site having a very low GPP (820 gC m-2 yr-1). The paper discusses the utility of the flux data and the synergies between flux, remote sensing, and modelling. Lastly, the paper looks ahead at the future direction of the network and concludes that there has been a substantial contribution by OzFlux, and considerable opportunities remain to further advance our understanding of ecosystem response to disturbances, including drought, fire, land-use and land-cover change, land management, and climate change, which are relevant both nationally and internationally. It is suggested that a synergistic approach is required to address all of the spatial, ecological, human, and cultural challenges of managing the delicately balanced ecosystems in Australasia.

Visitor Preferences for Visual Changes in Bark Beetle-Impacted Forest Recreation Settings in the United States and Germany

NASA Astrophysics Data System (ADS)

Arnberger, Arne; Ebenberger, Martin; Schneider, Ingrid E.; Cottrell, Stuart; Schlueter, Alexander C.; von Ruschkowski, Eick; Venette, Robert C.; Snyder, Stephanie A.; Gobster, Paul H.

2018-02-01

Extensive outbreaks of tree-killing insects are increasing across forests in Europe and North America due to climate change and other factors. Yet, little recent research examines visitor response to visual changes in conifer forest recreation settings resulting from forest insect infestations, how visitors weigh trade-offs between physical and social forest environment factors, or how visitor preferences might differ by nationality. This study explored forest visitor preferences with a discrete choice experiment that photographically simulated conifer forest stands with varying levels of bark beetle outbreaks, forest and visitor management practices, and visitor use levels and compositions. On-site surveys were conducted with visitors to State Forest State Park in Colorado ( n = 200), Lake Bemidji State Park in Minnesota ( n = 228), and Harz National Park in Germany ( n = 208). Results revealed that the condition of the immediate forest surrounding was the most important variable influencing visitors' landscape preferences. Visitors preferred healthy mature forest stands and disliked forests with substantial dead wood. The number of visitors was the most important social factor influencing visitor landscape preferences. Differences in the influence of physical and social factors on visual preferences existed between study sites. Findings suggest that both visual forest conditions and visitor use management are important concerns in addressing landscape preferences for beetle-impacted forest recreation areas.

Projected loss of soil organic carbon in temperate agricultural soils in the 21st century: effects of climate change and carbon input trends

PubMed Central

Wiesmeier, Martin; Poeplau, Christopher; Sierra, Carlos A.; Maier, Harald; Frühauf, Cathleen; Hübner, Rico; Kühnel, Anna; Spörlein, Peter; Geuß, Uwe; Hangen, Edzard; Schilling, Bernd; von Lützow, Margit; Kögel-Knabner, Ingrid

2016-01-01

Climate change and stagnating crop yields may cause a decline of SOC stocks in agricultural soils leading to considerable CO2 emissions and reduced agricultural productivity. Regional model-based SOC projections are needed to evaluate these potential risks. In this study, we simulated the future SOC development in cropland and grassland soils of Bavaria in the 21st century. Soils from 51 study sites representing the most important soil classes of Central Europe were fractionated and derived SOC pools were used to initialize the RothC soil carbon model. For each site, long-term C inputs were determined using the C allocation method. Model runs were performed for three different C input scenarios as a realistic range of projected yield development. Our modelling approach revealed substantial SOC decreases of 11–16% under an expected mean temperature increase of 3.3 °C assuming unchanged C inputs. For the scenario of 20% reduced C inputs, agricultural SOC stocks are projected to decline by 19–24%. Remarkably, even the optimistic scenario of 20% increased C inputs led to SOC decreases of 3–8%. Projected SOC changes largely differed among investigated soil classes. Our results indicated that C inputs have to increase by 29% to maintain present SOC stocks in agricultural soils. PMID:27585648

Visitor Preferences for Visual Changes in Bark Beetle-Impacted Forest Recreation Settings in the United States and Germany.

PubMed

Arnberger, Arne; Ebenberger, Martin; Schneider, Ingrid E; Cottrell, Stuart; Schlueter, Alexander C; von Ruschkowski, Eick; Venette, Robert C; Snyder, Stephanie A; Gobster, Paul H

2018-02-01

Extensive outbreaks of tree-killing insects are increasing across forests in Europe and North America due to climate change and other factors. Yet, little recent research examines visitor response to visual changes in conifer forest recreation settings resulting from forest insect infestations, how visitors weigh trade-offs between physical and social forest environment factors, or how visitor preferences might differ by nationality. This study explored forest visitor preferences with a discrete choice experiment that photographically simulated conifer forest stands with varying levels of bark beetle outbreaks, forest and visitor management practices, and visitor use levels and compositions. On-site surveys were conducted with visitors to State Forest State Park in Colorado (n = 200), Lake Bemidji State Park in Minnesota (n = 228), and Harz National Park in Germany (n = 208). Results revealed that the condition of the immediate forest surrounding was the most important variable influencing visitors' landscape preferences. Visitors preferred healthy mature forest stands and disliked forests with substantial dead wood. The number of visitors was the most important social factor influencing visitor landscape preferences. Differences in the influence of physical and social factors on visual preferences existed between study sites. Findings suggest that both visual forest conditions and visitor use management are important concerns in addressing landscape preferences for beetle-impacted forest recreation areas.

Monitoring a boreal wildfire using multi-temporal Radarsat-1 intensity and coherence images

USGS Publications Warehouse

Rykhus, Russell P.; Lu, Zhong

2011-01-01

Twenty-five C-band Radarsat-1 synthetic aperture radar (SAR) images acquired from the summer of 2002 to the summer of 2005 are used to map a 2003 boreal wildfire (B346) in the Yukon Flats National Wildlife Refuge, Alaska under conditions of near-persistent cloud cover. Our analysis is primarily based on the 15 SAR scenes acquired during arctic growing seasons. The Radarsat-1 intensity data are used to map the onset and progression of the fire, and interferometric coherence images are used to qualify burn severity and monitor post-fire recovery. We base our analysis of the fire on three test sites, two from within the fire and one unburned site. The B346 fire increased backscattered intensity values for the two burn study sites by approximately 5–6 dB and substantially reduced coherence from background levels of approximately 0.8 in unburned background forested areas to approximately 0.2 in the burned area. Using ancillary vegetation information from the National Land Cover Database (NLCD) and information on burn severity from Normalized Burn Ratio (NBR) data, we conclude that burn site 2 was more severely burned than burn site 1 and that C-band interferometric coherence data are useful for mapping landscape changes due to fire. Differences in burn severity and topography are determined to be the likely reasons for the observed differences in post-fire intensity and coherence trends between burn sites.

10 CFR 100.1 - Purpose.

Code of Federal Regulations, 2011 CFR

2011-01-01

... COMMISSION (CONTINUED) REACTOR SITE CRITERIA § 100.1 Purpose. (a) The purpose of this part is to establish approval requirements for proposed sites for stationary power and testing reactors subject to part 50 or part 52 of this chapter. (b) There exists a substantial base of knowledge regarding power reactor...

Monitoring Production of Methane from Spills of Gasoline at UST Release Sites (Boston, MA)

EPA Science Inventory

Anaerobic biodegradation of the BTEX compounds can produce substantial concentrations of methane in ground water at gasoline spill sites. This methane can escape the ground water, move through the unsaturated zone and potentially produce explosive concentrations of methane in c...

Long-term integrating samplers for indoor air and sub slab soil gas at VI sites

EPA Science Inventory

Vapor intrusion (VI) site assessments are plagued by substantial spatial and temporal variability that makes exposure and risk assessment difficult. Most risk-based decision making for volatile organic compound (VOC) exposure in the indoor environment is based on health benchmark...

Benefits and Sustainability of a Learning Collaborative for Implementation of Treat to Target in Rheumatoid Arthritis: Results of the TRACTION Trial Phase II.

PubMed

Solomon, Daniel H; Lu, Bing; Yu, Zhi; Corrigan, Cassandra; Harrold, Leslie R; Smolen, Josef S; Fraenkel, Liana; Katz, Jeffrey N; Losina, Elena

2018-01-05

We conducted a two-phase randomized controlled trial of a Learning Collaborative (LC) to facilitate implementation of treat to target (TTT) to manage rheumatoid arthritis (RA). We found substantial improvement in implementation of TTT in Phase I. Herein, we report on a second 9 months (Phase II) where we examined maintenance of response in Phase I and predictors of greater improvement in TTT adherence. We recruited 11 rheumatology sites and randomized them to either receive the LC during Phase I or to a wait-list control group that received the LC intervention during Phase II. The outcome was change in TTT implementation score (0 to 100, 100 is best) from pre- to post-intervention. TTT implementation score is defined as a percent of components documented in visit notes. Analyses examined: 1) the extent that the Phase I intervention teams sustained improvement in TTT; and, 2) predictors of TTT improvement. The analysis included 636 RA patients. At baseline, mean TTT implementation score was 11% in Phase I intervention sites and 13% in Phase II sites. After the intervention, TTT implementation score improved to 57% in the Phase I intervention sites and to 58% in the Phase II sites. Intervention sites from Phase I sustained the improvement during the Phase II (52%). Predictors of greater TTT improvement included only having rheumatologist providers at the site, academic affiliation of the site, fewer providers per site, and the rheumatologist provider being a trainee. Improvement in TTT remained relatively stable over a post-intervention period. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

The 2001-03 Famine and the Dynamics of HIV in Malawi: A Natural Experiment.

PubMed

Loevinsohn, Michael

2015-01-01

Food security has deteriorated for many people in developing regions facing high and volatile food prices. Without effective and equitable responses, the situation is likely to worsen due to diminishing access to land and water, competition from non-food uses of agricultural products, and the effects of climate change and variability. Understanding how this will affect the burden and distribution of major diseases such as HIV is critical. This study makes use of the near-experimental conditions created by the Malawi famine to shed new light on this issue. Multilevel, random intercept models were used to relate the change in HIV prevalence at antenatal surveillance sites over the course of the famine to the proportion of rural households requiring food aid in the surrounding district at the famine's peak. Similar models were used to relate this indicator of rural hunger to changes in the composition of the antenatal population. The extent and direction of migration were estimated from a household survey conducted 1-2 years after the famine. At rural sites, the change in HIV prevalence was positively and non-linearly related to the extent of rural hunger (P = 0.016), consistent with contemporary accounts of increased transactional sex and with hunger compromising immune function. At non-rural sites, prevalence declined as rural hunger increased (P = 0.006), concentrated in women who self-identified as farmers (P = 0.010). This finding is consistent with contemporary accounts of migration in search of food and work from villages where HIV risk was lower to towns and cities where it was higher. Corroborating this interpretation, the proportion of farmers in the antenatal population was found to rise at non-rural sites as rural hunger increased in the surrounding district (P = 0.015) whereas the proportion fell with increasing rural hunger at rural sites (P<0.001). The models suggest migrants were predominantly farming women under 25 years (P = 0.010). The household survey confirmed that there was a surge of rural-to-urban migration during the famine, particularly by women under 25 years. Migration to less affected rural areas also increased. The Malawi famine appears to have had a substantial effect on HIV's dynamics and demography. Poverty and inequality, commonly considered structural determinants of HIV epidemics, can change rapidly, apparently transmitting their effects with little lag. Epidemic patterns risk being misread if such social and economic change is ignored. Many studies examining HIV prevalence declines have implicated sexual behaviour change but do not appear to have adequately considered the contribution of rural-urban migration. The evidence from Malawi, which links actions that undermined people's food security to changes in the prevalence and distribution of HIV infections, suggests new opportunities for prevention.

Evaluation of water quality, suspended sediment, and stream morphology with an emphasis on effects of stormwater on Fountain and Monument Creek basins, Colorado Springs and vicinity, Colorado, 1981-2001

USGS Publications Warehouse

Edelmann, Patrick; Ferguson, Sheryl A.; Stogner, Sr., Robert W.; August, Marianne; Payne, William F.; Bruce, James F.

2002-01-01

This report documents water quality and suspended sediment with an emphasis on evaluating the effects of stormflow on Fountain Creek Basin in the vicinity of Colorado Springs, Colorado. Water-quality data collected at 11 sites between 1981 and 2001 were used to evaluate the effects of stormflow on water quality. Suspended-sediment data collected at seven sites from 1998 through 2001 were used to evaluate effects of stormflow on suspended-sediment concentrations, discharges, and yields. Data were separated into three flow regimes: base flow, normal flow, and stormflow. A comparison of stormwater-quality concentrations measured between 1981 and 2001 to Colorado acute instream standards indicated that, except for isolated occurrences, stormwater quality met acute instream standards. At several sites, 5-day biochemical oxygen demand, fecal coliform, and selected nutrient concentrations tended to be highest during stormflow and lowest during base flow. Dissimilar to the other nutrients, dissolved nitrite plus nitrate concentrations generally were highest during base flow and lowest during stormflow. Most dissolved trace-element concentrations associated with stormflow decreased or showed little change compared to base flow. However, median concentrations of total copper, iron, lead, nickel, manganese, and zinc for stormflow samples generally were much larger than nonstorm samples. The substantially larger concentrations of total copper, iron, lead, nickel, manganese, and zinc measured at site 5800 during stormflow as compared to other sites indicates a relatively large source of these metals in the reach between sites 5530 and 5800. Semi-volatile organic compounds in samples collected during stormflow were detected relatively infrequently at the four sites monitored; however, analysis of pesticide data collected during stormflow showed a relatively frequent detection of pesticides at low levels. Nitrogen, phosphorus, and particulate trace-element loads substantially increased during stormflow. Suspended-sediment concentrations, discharges, and yields associated with stormflow were significantly greater than during normal flow. Depending on the site and year, suspended-sediment concentrations associated with storm-flow generally were 3 to10 times greater than concentrations measured during normal flow, and suspended-sediment discharges were usually more than 10 times greater during stormflow. The April through October cumulative suspended-sediment discharges and streamflows were largest in 1999 at all sites. Although large spatial variations in suspended-sediment yields occurred during normal flows, the suspended-sediment yields associated with stormflow generally were more than 10 times greater than the suspended-sediment yields that occurred during normal flow. The smallest suspended-sediment yields generally were less than 1 ton per day per square mile during stormflow. The largest suspended-sediment yields occurred at sites located in the Cottonwood Creek Basin and were greater than 10 tons per day per square mile.

Sea ice dynamics across the Mid-Pleistocene transition in the Bering Sea.

PubMed

Detlef, H; Belt, S T; Sosdian, S M; Smik, L; Lear, C H; Hall, I R; Cabedo-Sanz, P; Husum, K; Kender, S

2018-03-05

Sea ice and associated feedback mechanisms play an important role for both long- and short-term climate change. Our ability to predict future sea ice extent, however, hinges on a greater understanding of past sea ice dynamics. Here we investigate sea ice changes in the eastern Bering Sea prior to, across, and after the Mid-Pleistocene transition (MPT). The sea ice record, based on the Arctic sea ice biomarker IP 25 and related open water proxies from the International Ocean Discovery Program Site U1343, shows a substantial increase in sea ice extent across the MPT. The occurrence of late-glacial/deglacial sea ice maxima are consistent with sea ice/land ice hysteresis and land-glacier retreat via the temperature-precipitation feedback. We also identify interactions of sea ice with phytoplankton growth and ocean circulation patterns, which have important implications for glacial North Pacific Intermediate Water formation and potentially North Pacific abyssal carbon storage.

Theoretical study of the partial molar volume change associated with the pressure-induced structural transition of ubiquitin

PubMed Central

Imai, Takashi; Ohyama, Shusaku; Kovalenko, Andriy; Hirata, Fumio

2007-01-01

The partial molar volume (PMV) change associated with the pressure-induced structural transition of ubiquitin is analyzed by the three-dimensional reference interaction site model (3D-RISM) theory of molecular solvation. The theory predicts that the PMV decreases upon the structural transition, which is consistent with the experimental observation. The volume decomposition analysis demonstrates that the PMV reduction is primarily caused by the decrease in the volume of structural voids in the protein, which is partially canceled by the volume expansion due to the hydration effects. It is found from further analysis that the PMV reduction is ascribed substantially to the penetration of water molecules into a specific part of the protein. Based on the thermodynamic relation, this result implies that the water penetration causes the pressure-induced structural transition. It supports the water penetration model of pressure denaturation of proteins proposed earlier. PMID:17660257

Theoretical study of the partial molar volume change associated with the pressure-induced structural transition of ubiquitin.

PubMed

Imai, Takashi; Ohyama, Shusaku; Kovalenko, Andriy; Hirata, Fumio

2007-09-01

The partial molar volume (PMV) change associated with the pressure-induced structural transition of ubiquitin is analyzed by the three-dimensional reference interaction site model (3D-RISM) theory of molecular solvation. The theory predicts that the PMV decreases upon the structural transition, which is consistent with the experimental observation. The volume decomposition analysis demonstrates that the PMV reduction is primarily caused by the decrease in the volume of structural voids in the protein, which is partially canceled by the volume expansion due to the hydration effects. It is found from further analysis that the PMV reduction is ascribed substantially to the penetration of water molecules into a specific part of the protein. Based on the thermodynamic relation, this result implies that the water penetration causes the pressure-induced structural transition. It supports the water penetration model of pressure denaturation of proteins proposed earlier.

[Clinical MR at 3 Tesla: current status].

PubMed

Baudendistel, K T; Heverhagen, J T; Knopp, M V

2004-01-01

Clinical MRI is mostly performed at field strengths up to 1.5 Tesla (T). Recently, approved clinical whole-body MR-systems with a field strength of 3 T became available. Its installation base is more rapidly growing than anticipated. While site requirements and operation of these systems do not differ substantially from systems with lower field strength, there are differences in practical applications. Imaging applications can use the gain in signal-to-noise for increased spatial resolution or gain in speed. This comes at a trade off in increased sensitivity to field inhomogeneities and changes in relaxation times, which lead to changes in image contrast. The benefit of high field for spectroscopy consists in increased signal-to-noise-ratio and improvement in frequency resolution. The increase in energy deposition necessitates the use of special strategies to reduce the specific absorption rate (SAR). This paper summarizes the current state of MR at 3 T.

Ecological risk caused by land use change in the coastal zone: a case study in the Yellow River Delta High-Efficiency Ecological Economic Zone

NASA Astrophysics Data System (ADS)

Di, X. H.; Wang, Y. D.; Hou, X. Y.

2014-03-01

China's coastal zone plays an important role in ecological services production and social-economic development; however, extensive and intensive land resource utilization and land use change have lead to high ecological risk in this area during last decade. Regional ecological risk assessment can provide fundamental knowledge and scientific basis for better understanding of the relationship between regional landscape ecosystem and human activities or climate changes, facilitating the optimization strategy of land use structure and improving the ecological risk prevention capability. In this paper, the Yellow River Delta High-Efficiency Ecological Economic Zone is selected as the study site, which is undergoing a new round of coastal zone exploitation and has endured substantial land use change in the past decade. Land use maps of 2000, 2005 and 2010 were generated based on Landsat images by visual interpretation method, and the ecological risk index was then calculated. The index was 0.3314, 0.3461 and 0.3176 in 2000, 2005 and 2010 respectively, which showed a positive transition of regional ecological risk in 2005.

Long-term active-layer dynamics: results of 22 years of field observations in Northern Hemisphere permafrost regions.

NASA Astrophysics Data System (ADS)

Shiklomanov, N. I.; Nelson, F. E.; Streletskiy, D. A.; Klene, A. E.; Biskaborn, B. K.

2016-12-01

The uppermost layer of seasonal thawing above permafrost (the active layer) is an important regulator of energy and mass fluxes between the surface and the atmosphere in the polar regions. Active layer monitoring is an important component of efforts to assess the effects of global change in permafrost environments. The Circumpolar Active Layer Monitoring (CALM) program, established in the early 1990s, is designed to observe temporal and spatial variability of the active layer and its response to changes and variations in climatic conditions. The CALM network is an integral part of the Global Terrestrial Network for Permafrost (GTN-P), operating under the auspices of the Global Terrestrial Observing System (GTOS) /Global Climate Observing System (GCOS). Standardized thaw depth observations in the Northern Hemisphere are available for more than 200 GTN-P/CALM sites in the Northern Hemisphere. At each of the sites spatially distributed ALT measurements have been conducted annually by mechanical probing. The locations of sites represent generalized surface and subsurface conditions characteristic of broader regions. The data are assimilated and distributed though the CALM (www.gwu.edu/ calm) and GTN-P (gtnpdatabase.org) online databases. In this presentation we use data from approximately 20 years of continuous observations to examine temporal trends in active-layer thickness for several representative Arctic regions. Results indicate substantial interannual fluctuations in active-layer thickness, primarily in response to variations in air temperature. Decadal trends in ALT vary by region. A progressive increase in ALT has been observed in the Nordic countries, the Russian European North, West Siberia, East Siberia, the Russian Far East, and the Interior of Alaska. North American Arctic sites show no apparent thaw depth trend over 22-years of record. However, combined active layer, ground temperature and heave/subsidence observations conducted in northern Alaska demonstrate a complex, non-linear response of the active-layer/upper permafrost system to changes in climatic conditions.

Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage

PubMed Central

Cattenoz, Pierre B.; Taft, Ryan J.; Westhof, Eric; Mattick, John S.

2013-01-01

Adenosine to inosine (A > I) RNA editing, which is catalyzed by the ADAR family of proteins, is one of the fundamental mechanisms by which transcriptomic diversity is generated. Indeed, a number of genome-wide analyses have shown that A > I editing is not limited to a few mRNAs, as originally thought, but occurs widely across the transcriptome, especially in the brain. Importantly, there is increasing evidence that A > I editing is essential for animal development and nervous system function. To more efficiently characterize the complete catalog of ADAR events in the mammalian transcriptome we developed a high-throughput protocol to identify A > I editing sites, which exploits the capacity of glyoxal to protect guanosine, but not inosine, from RNAse T1 treatment, thus facilitating extraction of RNA fragments with inosine bases at their termini for high-throughput sequencing. Using this method we identified 665 editing sites in mouse brain RNA, including most known sites and suite of novel sites that include nonsynonymous changes to protein-coding genes, hyperediting of genes known to regulate p53, and alterations to non-protein-coding RNAs. This method is applicable to any biological system for the de novo discovery of A > I editing sites, and avoids the complicated informatic and practical issues associated with editing site identification using traditional RNA sequencing data. This approach has the potential to substantially increase our understanding of the extent and function of RNA editing, and thereby to shed light on the role of transcriptional plasticity in evolution, development, and cognition. PMID:23264566

Interactions Between Land Use, Climate and Hydropower in Scotland

NASA Astrophysics Data System (ADS)

Sample, J.

2014-12-01

To promote the transition towards a low carbon economy, the Scottish Government has adopted ambitious energy targets, including generating all electricity from renewable sources by 2020. To achieve this, continued investment will be required across a range of sustainable technologies. Hydropower has a long history in Scotland and the present-day operational capacity of ~1.5 GW makes a substantial contribution to the national energy budget. In addition, there remains potential for ~500 MW of further development, mostly in the form of small to medium size run-of-river schemes. Climate change is expected to lead to an intensification of the global hydrological cycle, leading to changes in both the magnitude and seasonality of river flows. There may also be indirect effects, such as changing land use, enhanced evapotranspiration rates and an increased demand for irrigation, all of which could affect the water available for energy generation. Preliminary assessments of hydropower commonly use flow duration curves (FDCs) to estimate the power generation potential at proposed new sites. In this study, we use spatially distributed modelling to generate daily and monthly FDCs for a range of Scottish catchments using a variety of future land use and climate change scenarios. These are then used to assess Scotland's future hydropower potential under different flow regimes. The results are spatially variable and include large uncertainties, but some consistent patterns emerge. Many locations are predicted to experience enhanced seasonality, with lower power generation potential in the summer months and greater potential during the autumn and winter. Some sites may require infrastructural changes in order to continue operating at optimum efficiency. We discuss the implications and limitations of our results, and highlight design and adaptation options for maximising the resilience of hydropower installations under changing future flow patterns.

Crystal structure of Halobacterium salinarum halorhodopsin with a partially depopulated primary chloride-binding site.

PubMed

Schreiner, Madeleine; Schlesinger, Ramona; Heberle, Joachim; Niemann, Hartmut H

2016-09-01

The transmembrane pump halorhodopsin in halophilic archaea translocates chloride ions from the extracellular to the cytoplasmic side upon illumination. In the ground state a tightly bound chloride ion occupies the primary chloride-binding site (CBS I) close to the protonated Schiff base that links the retinal chromophore to the protein. The light-triggered trans-cis isomerization of retinal causes structural changes in the protein associated with movement of the chloride ion. In reverse, chemical depletion of CBS I in Natronomonas pharaonis halorhodopsin (NpHR) through deprotonation of the Schiff base results in conformational changes of the protein: a state thought to mimic late stages of the photocycle. Here, crystals of Halobacterium salinarum halorhodopsin (HsHR) were soaked at high pH to provoke deprotonation of the Schiff base and loss of chloride. The crystals changed colour from purple to yellow and the occupancy of CBS I was reduced from 1 to about 0.5. In contrast to NpHR, this chloride depletion did not cause substantial conformational changes in the protein. Nevertheless, two observations indicate that chloride depletion could eventually result in structural changes similar to those found in NpHR. Firstly, the partially chloride-depleted form of HsHR has increased normalized B factors in the region of helix C that is close to CBS I and changes its conformation in NpHR. Secondly, prolonged soaking of HsHR crystals at high pH resulted in loss of diffraction. In conclusion, the conformation of the chloride-free protein may not be compatible with this crystal form of HsHR despite a packing arrangement that hardly restrains helices E and F that presumably move during ion transport.

Permafrost Changes along the Alaska Highway Corridor, Southern Yukon, from Ground Temperature Measurements and DC Electrical Resistivity Tomography

NASA Astrophysics Data System (ADS)

Duguay, M. A.; Lewkowicz, A. G.; Smith, S.

2011-12-01

A natural gas pipeline running across permafrost terrain from Prudhoe Bay, Alaska, through Canada to US markets was first proposed more than 30 years ago. In the intervening period, mean annual air temperatures in the region have risen by 0.5-1.0°C and it is probable that the ground has also warmed. Renewed interest in the pipeline has meant that information on permafrost and geotechnical conditions within the Alaska Highway Corridor of the southern Yukon must be updated for engineering design and the assessment of environmental impacts. To accomplish this goal, results from 1977-1981 drilling and ground temperature monitoring programs within the proposed pipeline corridor were used in combination with air photo analysis to select sites potentially sensitive to climate change. The sites are distributed across the extensive and sporadic discontinuous permafrost zones over a distance of 475 km between Beaver Creek and Whitehorse. To date, 11 targeted boreholes with permafrost have been found and cased to permit renewed ground temperature monitoring. By the end of summer 2011, it is expected that another 7 will have been instrumented. Measurable temperature increases relative to the 1970s are expected, except where values were previously just below 0°C. In the latter case, if the sites are still in permafrost, latent heat effects may have substantially moderated the temperature increase. Electrical resistivity tomography surveys are also being conducted to characterize the local permafrost distribution and geotechnical conditions. These 2D resistivity profiles will be used with the ground temperatures to examine current conditions and response to climate change and vegetation disturbance.

Rethinking the Clinically Based Thresholds of TransCelerate BioPharma for Risk-Based Monitoring.

PubMed

Zink, Richard C; Dmitrienko, Anastasia; Dmitrienko, Alex

2018-01-01

The quality of data from clinical trials has received a great deal of attention in recent years. Of central importance is the need to protect the well-being of study participants and maintain the integrity of final analysis results. However, traditional approaches to assess data quality have come under increased scrutiny as providing little benefit for the substantial cost. Numerous regulatory guidance documents and industry position papers have described risk-based approaches to identify quality and safety issues. In particular, the position paper of TransCelerate BioPharma recommends defining risk thresholds to assess safety and quality risks based on past clinical experience. This exercise can be extremely time-consuming, and the resulting thresholds may only be relevant to a particular therapeutic area, patient or clinical site population. In addition, predefined thresholds cannot account for safety or quality issues where the underlying rate of observing a particular problem may change over the course of a clinical trial, and often do not consider varying patient exposure. In this manuscript, we appropriate rules commonly utilized for funnel plots to define a traffic-light system for risk indicators based on statistical criteria that consider the duration of patient follow-up. Further, we describe how these methods can be adapted to assess changing risk over time. Finally, we illustrate numerous graphical approaches to summarize and communicate risk, and discuss hybrid clinical-statistical approaches to allow for the assessment of risk at sites with low patient enrollment. We illustrate the aforementioned methodologies for a clinical trial in patients with schizophrenia. Funnel plots are a flexible graphical technique that can form the basis for a risk-based strategy to assess data integrity, while considering site sample size, patient exposure, and changing risk across time.

75 FR 70604 - Wireless E911 Location Accuracy Requirements

Federal Register 2010, 2011, 2012, 2013, 2014

2010-11-18

... carriers are unable to recover the substantial cost of constructing a large number of additional cell sites... characteristics, cell site density, overall system technology requirements, etc.) while, in either case, ensuring... the satellites and the handset. The more extensive the tree cover, the greater the difficulty the...

Monitoring Production of Methane from Spills of Gasoline at UST Release Sites.

EPA Science Inventory

ORD-362 (Rev 06/10/05) (Webforms v2.4) Abstract: Anaerobic biodegradation of the BTEX compounds can produce substantial concentrations of methane in ground water at gasoline spill sites. This methane can escape the ground water, move through the unsaturated zone and potentiall...

SIMULATIONS OF TWO-WELL TRACER TESTS IN STRATIFIED AQUIFERS AT THE CHALK RIVER AND THE MOBILE SITES

EPA Science Inventory

A simulation of two-well injection-withdrawal tracer tests in stratified granular aquifers is presented for two widely separated sites substantially different in terms of vertical distributions of hydraulic conductivity, well spacings, flow rates, test durations and tracer travel...

Water quality in Indiana: trends in concentrations of selected nutrients, metals, and ions in streams, 2000-10

USGS Publications Warehouse

Risch, Martin R.; Bunch, Aubrey R.; Vecchia, Aldo V.; Martin, Jeffrey D.; Baker, Nancy T.

2014-01-01

Statistically significant trends were identified that included 167 downward trends and 83 upward trends. The Kankakee River Basin had the most significant upward trends while the most significant downward trends were in the Whitewater River Basin, the Lake Michigan Basin, and the Patoka River Basin. For most constituents, a majority of sites had significant downward trends. Two streams in the Lake Michigan Basin have shown substantial decreases in most constituents. The West Fork White River near Indianapolis, Indiana, showed increases in nitrate and phosphorus and the Kankakee River Basin showed increases in copper, zinc, chloride, sulfate, and hardness. Upward trends in nutrients were identified at a few sites, but most nutrient trends were downward. Upward trends in metals corresponded with relatively small concentration increases while downward trends involved considerably larger concentration changes. Downward trends in chloride, sulfate, and suspended solids were observed statewide, but upward trends in hardness were observed in the northern half of Indiana.

Meteorological factors in Earth-satellite propagation

NASA Technical Reports Server (NTRS)

Levis, C. A.; Taylor, R. C.; Leonard, R.; Lin, K. T.; Pigon, B.; Weller, A.

1982-01-01

Using the COMSTAR D/4 28.56 GHz beacon as a source, a differential gain experiment was performed by connecting a 5-meter paraboloidal antenna and a 0.6-meter paraboloidal antenna alternately to the same receiver. Substantial differential gain changes were observed during some, but not all, rain events. A site-diversity experiment was implemented which consists of two 28.56 GHz radiometers separated by 9 km. The look-angle corresponds to that of the D/4 beacon, and data were obtained with one radiometer during several weeks of concurrent beacon operation to verify the system calibration. A theoretical study of the effect of scattering from a nonuniform rain distribution along the path is under way to aid in interpreting the results of this experiment. An improved empirical site diversity-gain model was derived from data in the literature relating to 34 diversity experiments. Work on the experiment control and data acquisition system is continuing with a view toward future experiments.

FOREST ECOLOGY. Pervasive drought legacies in forest ecosystems and their implications for carbon cycle models.

PubMed

Anderegg, W R L; Schwalm, C; Biondi, F; Camarero, J J; Koch, G; Litvak, M; Ogle, K; Shaw, J D; Shevliakova, E; Williams, A P; Wolf, A; Ziaco, E; Pacala, S

2015-07-31

The impacts of climate extremes on terrestrial ecosystems are poorly understood but important for predicting carbon cycle feedbacks to climate change. Coupled climate-carbon cycle models typically assume that vegetation recovery from extreme drought is immediate and complete, which conflicts with the understanding of basic plant physiology. We examined the recovery of stem growth in trees after severe drought at 1338 forest sites across the globe, comprising 49,339 site-years, and compared the results with simulated recovery in climate-vegetation models. We found pervasive and substantial "legacy effects" of reduced growth and incomplete recovery for 1 to 4 years after severe drought. Legacy effects were most prevalent in dry ecosystems, among Pinaceae, and among species with low hydraulic safety margins. In contrast, limited or no legacy effects after drought were simulated by current climate-vegetation models. Our results highlight hysteresis in ecosystem-level carbon cycling and delayed recovery from climate extremes. Copyright © 2015, American Association for the Advancement of Science.

Influence of culture on contraceptive utilization among HIV-positive women in Brazil, Kenya, and South Africa.

PubMed

Todd, Catherine S; Stibich, Mark A; Laher, Fatima; Malta, Monica S; Bastos, Francisco I; Imbuki, Kennedy; Shaffer, Douglas N; Sinei, Samuel K; Gray, Glenda E

2011-02-01

Contraceptive choice and discontinuation are poorly understood among HIV-positive women, and HIV disease and culture may influence decisions. We assessed factors influencing contraceptive decision-making among HIV-positive women in three countries. This qualitative assessment of 108 HIV-positive women (36/site, selected by age and parity strata) was conducted in Rio de Janeiro, Brazil; Kericho, Kenya; and Soweto, South Africa. Freelist interviews assessed knowledge and attitudes towards contraception and were analyzed enumerating frequency and saliency of mentions. There was intersite consensus around list items but priority and themes varied. Site-specific factors influencing contraceptive choice were male partner wishes and fertility desire (Brazil), side-effects (South Africa), and impact on health and HIV progression (Kenya). Age, parity, and taking antiretroviral therapy (ART) impacted some themes. Contraceptive use among HIV-positive women is substantially influenced by culture and other factors. Counseling efforts should consider individual factors in method selection and offer method variety to accommodate changing needs.

Borehole density on the surface of living Porites corals as an indicator of sedimentation in Hong Kong.

PubMed

Xie, James Y; Wong, Jane C Y; Dumont, Clement P; Goodkin, Nathalie; Qiu, Jian-Wen

2016-07-15

Borehole density on the surface of Porites has been used as an indicator of water quality in the Great Barrier Reef. We assessed the relationship between borehole density on Porites and eight water quality parameters across 26 sites in Hong Kong. We found that total borehole densities on the surface of Porites at 16 of the studied sites were high (>1000individualsm(-2)), with polychaetes being the dominant bioeroders. Sedimentation rate was correlated positively with total borehole density and polychaete borehole density, with the latter relationship having a substantially higher correlation of determination. None of the environmental factors used were significantly correlated with bivalve borehole density. These results provide a baseline for assessing future changes in coral bioerosion in Hong Kong. This present study also indicates that polychaete boreholes can be used as a bioindicator of sedimentation in the South China Sea region where polychaetes are numerically dominant bioeroders. Copyright © 2016 Elsevier Ltd. All rights reserved.

Epigenetic targeting of Hedgehog pathway transcriptional output through BET bromodomain inhibition

PubMed Central

Tang, Yujie; Gholamin, Sharareh; Schubert, Simone; Willardson, Minde I.; Lee, Alex; Bandopadhayay, Pratiti; Bergthold, Guillame; Masoud, Sabran; Nguyen, Brian; Vue, Nujsaubnusi; Balansay, Brianna; Yu, Furong; Oh, Sekyung; Woo, Pamelyn; Chen, Spenser; Ponnuswami, Anitha; Monje, Michelle; Atwood, Scott X.; Whitson, Ramon J.; Mitra, Siddhartha; Cheshier, Samuel H.; Qi, Jun; Beroukhim, Rameen; Tang, Jean Y.; Wechsler-Reya, Rob; Oro, Anthony E.; Link, Brian A.; Bradner, James E.; Cho, Yoon-Jae

2014-01-01

Hedgehog signaling drives oncogenesis in several cancers and strategies targeting this pathway have been developed, most notably through inhibition of Smoothened. However, resistance to Smoothened inhibitors occurs via genetic changes of Smoothened or other downstream Hedgehog components. Here, we overcome these resistance mechanisms by modulating GLI transcription via inhibition of BET bromodomain proteins. We show the BET bromodomain protein, BRD4, regulates GLI transcription downstream of SMO and SUFU and chromatin immunoprecipitation studies reveal BRD4 directly occupies GLI1 and GLI2 promoters, with a substantial decrease in engagement of these sites upon treatment with JQ1, a small molecule inhibitor targeting BRD4. Globally, genes associated with medulloblastoma-specific GLI1 binding sites are downregulated in response to JQ1 treatment, supporting direct regulation of GLI activity by BRD4. Notably, patient- and GEMM-derived Hedgehog-driven tumors (basal cell carcinoma, medulloblastoma and atypical teratoid/rhabdoid tumor) respond to JQ1 even when harboring genetic lesions rendering them resistant to Smoothened antagonists. PMID:24973920

The significance of discharge in the replenishment of sand bar deposits along the Colorado River through the Grand Canyon

NASA Astrophysics Data System (ADS)

Wiele, S.; Hazel, J.; Schmidt, J. C.; Melis, T.

2002-12-01

Topographic sandbar surveys, recovered scour chains, analysis of aerial photos, and modeling of sand deposition demonstrate that releases from Glen Canyon Dam greater than power-plant capacity (PPC; about 900 cubic meters per second) are significantly more effective than PPC-limited releases at redistributing sand from the channel bed to higher elevations along the channel margin. A release of 1,270 m3/s (1.4 times the PPC) for 7 days in 1996 tested the effectiveness with which sandbars could be restored by the manipulation of dam releases aimed at redistributing a limited sand supply. This high flow generally resulted in substantial increases in bar size, although some sandbars close to the dam eroded. Since 1996, releases for bar building and habitat maintenance (a 2-day release in 1997 and two 4-day releases in 2000) have been limited to PPC. Field measurements indicate that the 1996 release of 1,270 m3/s significantly increased the area and volume of sand deposits at elevations greater than the stage reached during typical post-dam flows. Minor aggradation occurred during the PPC flows. In 1996, the relative extent of erosion and deposition changed longitudinally downstream as evidenced by the area of substantial deposition exceeding that of erosion at sites further downstream. The number of bars that were substantially reworked, as measured by the number of bars that significantly increased or decreased in area at the elevation range of normal dam operations, was much greater at 1,270 m3/s than at 900 m3/s. Deposition from the 1,270 m3/s release persisted at many sites on a multi-year scale whereas deposition resulting from the PPC flows only lasted a few months. Minor deposition during PPC flows in 1997, however, was greatest in upstream reaches where bar erosion during normal flows had been more extensive. These observations show that deposition is sensitive to flow magnitude and depth of inundation as well as sand supply. Flow, sand transport, and bed evolution were modeled for conditions that occurred during PPC flows and at higher discharges, such as those that occurred in 1996. Modeling results show that discharges greater than PPC form larger, higher-elevation deposits than are possible at discharges less than PPC. A key requirement for substantial deposition of new sand along the sides of this narrow, deeply incised river is the availability of depositional sites. PPC flows fail to increase stage sufficiently to create space to accommodate new deposits. The inefficiency of PPC releases at building substantial sandbars is compounded by the efficiency with which channel-bed sand is exported during PPC flows, as shown by sand-transport data collected from 1997-2000. Results to date indicate that restoration and maintenance of sand bars will likely require releases greater than PPC more frequently and of shorter duration than anticipated in the past.

Meaningful change and responsiveness in common physical performance measures in older adults.

PubMed

Perera, Subashan; Mody, Samir H; Woodman, Richard C; Studenski, Stephanie A

2006-05-01

To estimate the magnitude of small meaningful and substantial individual change in physical performance measures and evaluate their responsiveness. Secondary data analyses using distribution- and anchor-based methods to determine meaningful change. Secondary analysis of data from an observational study and clinical trials of community-dwelling older people and subacute stroke survivors. Older adults with mobility disabilities in a strength training trial (n=100), subacute stroke survivors in an intervention trial (n=100), and a prospective cohort of community-dwelling older people (n=492). Gait speed, Short Physical Performance Battery (SPPB), 6-minute-walk distance (6MWD), and self-reported mobility. Most small meaningful change estimates ranged from 0.04 to 0.06 m/s for gait speed, 0.27 to 0.55 points for SPPB, and 19 to 22 m for 6MWD. Most substantial change estimates ranged from 0.08 to 0.14 m/s for gait speed, 0.99 to 1.34 points for SPPB, and 47 to 49 m for 6MWD. Based on responsiveness indices, per-group sample sizes for clinical trials ranged from 13 to 42 for substantial change and 71 to 161 for small meaningful change. Best initial estimates of small meaningful change are near 0.05 m/s for gait speed, 0.5 points for SPPB, and 20 m for 6MWD and of substantial change are near 0.10 m/s for gait speed, 1.0 point for SPPB, and 50 m for 6MWD. For clinical use, substantial change in these measures and small change in gait speed and 6MWD, but not SPPB, are detectable. For research use, these measures yield feasible sample sizes for detecting meaningful change.

Substantial population structure of Plasmodium vivax in Thailand facilitates identification of the sources of residual transmission.

PubMed

Kittichai, Veerayuth; Koepfli, Cristian; Nguitragool, Wang; Sattabongkot, Jetsumon; Cui, Liwang

2017-10-01

Plasmodium vivax transmission in Thailand has been substantially reduced over the past 10 years, yet it remains highly endemic along international borders. Understanding the genetic relationship of residual parasite populations can help track the origins of the parasites that are reintroduced into malaria-free regions within the country. A total of 127 P. vivax isolates were genotyped from two western provinces (Tak and Kanchanaburi) and one eastern province (Ubon Ratchathani) of Thailand using 10 microsatellite markers. Genetic diversity was high, but recent clonal expansion was detected in all three provinces. Substantial population structure and genetic differentiation of parasites among provinces suggest limited gene flow among these sites. There was no haplotype sharing among the three sites, and a reduced panel of four microsatellite markers was sufficient to assign the parasites to their provincial origins. Significant parasite genetic differentiation between provinces shows successful interruption of parasite spread within Thailand, but high diversity along international borders implies a substantial parasite population size in these regions. The provincial origin of P. vivax cases can be reliably determined by genotyping four microsatellite markers, which should be useful for monitoring parasite reintroduction after malaria elimination.

Solution NMR Structures of Oxidized and Reduced Ehrlichia chaffeensis thioredoxin: NMR-Invisible Structure Owing to Backbone Dynamics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buchko, Garry W.; Hewitt, Stephen N.; Van Voorhis, Wesley C.

Thioredoxins (Trxs) are small ubiquitous proteins that participate in a diverse variety of redox reactions via the reversible oxidation of two cysteine thiol groups in a structurally conserved active site, CGPC. Here, we describe the NMR solution structures of a Trx from Ehrlichia chaffeensis (Ec-Trx, ECH_0218), the etiological agent responsible for human monocytic ehrlichiosis, in both the oxidized and reduced states. The overall topology of the calculated structures is similar in both redox states and similar to other Trx structures, a five-strand, mixed -sheet (1:3:2:4:5) surrounded by four -helices. Unlike other Trxs studied by NMR in both redox states, themore » 1H-15N HSQC spectra of reduced Ec-Trx was missing eight amide cross peaks relative to the spectra of oxidized Ec-Trx. These missing amides correspond to residues C32-E39 in the active site containing helix (2) and S72-I75 in a loop near the active site and suggest a substantial change in the backbone dynamics associated with the formation of an intramolecular C32-C35 disulfide bond.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Namhata, Argha; Oladyshkin, Sergey; Dilmore, Rober

Carbon dioxide (CO2) storage into geological formations is regarded as an important mitigation strategy for anthropogenic CO2 emissions to the atmosphere. This study first simulates the leakage of CO2 and brine from a storage reservoir through the caprock. Then, we estimate the resulting pressure changes at the zone overlying the caprock also known as Above Zone Monitoring Interval (AZMI). A data-driven approach of arbitrary Polynomial Chaos (aPC) Expansion is then used to quantify the uncertainty in the above zone pressure prediction based on the uncertainties in different geologic parameters. Finally, a global sensitivity analysis is performed with Sobol indices basedmore » on the aPC technique to determine the relative importance of different parameters on pressure prediction. The results indicate that there can be uncertainty in pressure prediction locally around the leakage zones. The degree of such uncertainty in prediction depends on the quality of site specific information available for analysis. The scientific results from this study provide substantial insight that there is a need for site-specific data for efficient predictions of risks associated with storage activities. The presented approach can provide a basis of optimized pressure based monitoring network design at carbon storage sites.« less

Implications of the fluvial history of the Wacheqsa River for hydrologic engineering and water use at Chavín de Húntar, Peru

USGS Publications Warehouse

Contreras, Daniel A.; Keefer, David K.

2009-01-01

Channeling of water through a variety of architectural features represents a significant engineering investment at the first millennium B.C. ceremonial center of Chavín de Huántar in the Peruvian Central Andes. The site contains extensive evidence of the manipulation of water, apparently for diverse purposes. The present configuration of the two local rivers, however, keeps available water approximately 9m below the highest level of water-bearing infrastructure in the site. Geomorphic and archaeological investigation of the fluvial history of the Wacheqsa River has revealed evidence that the Chavín-era configuration of the Wacheqsa River was different. A substantially higher water level, likely the result of a local impoundment of river water caused by a landslide dam, made the provision of water for the hydrologic system within the site a more readily practical possibility. We review what is known of that system and argue that the fluvial history of the Wacheqsa River is critical to understanding this aspect of hydrologic engineering and ritual practice at Chavín. This study demonstrates the relative rapidity and archaeological relevance of landscape change in a dynamic environment.

Monsoon Related Fluctuations in Terrigenous Sedimentation and Biological Productivity in the Bay of Bengal During the Past 24,500 Years

NASA Astrophysics Data System (ADS)

K V, S.; Kurian, J.; Meloth, T.; Rasik, R.

2011-12-01

Reconstruction of the Indian monsoon precipitation on a centennial to millennial scale has important relevance on the future climate and hydrologic change over the entire South Asia. Here we present paleo-monsoon records from a AMS 14C dated sediment core from the Bay of Bengal (ABP-24/01; location - 11°15.52' N & 90°21.84' E, water depth - 3206 m) that span the past 24.5 ka BP (calendar age). The array of inorganic and organic geochemical proxy records examined here assist the reconstruction of monsoon associated precipitation/ runoff, oceanic productivity and water column processes during the last glacial maximum (LGM ~21±2 ka BP) to the late Holocene. During the early stages of LGM, terrigenous elemental concentrations (Al, Fe) remained low, with substantial increase towards late LGM stage. Significantly, the substantial LGM increase in the eolian proxy concentrations (Mg, Rb) suggest that with the diminishing strength of the rain bearing SW monsoon during LGM the dry NE monsoon strengthened, leading to increased dust input to the Bay of Bengal. Although the LGM biological productivity (Corg, CaCO3, Ba) at the site remained low due to the relative decrease in runoff-derived nutrients, the ocean bottom seems to have less ventilated (Mn, U, V). The deglacial period is associated with slightly increasing monsoonal runoff increasing trend in terrigenous input, without any increase in biological productivity. Interestingly, the enhanced terrigenous input to the core site occurred during 12.5 - 10 ka BP. The Holocene was characterised by a dramatic increase in biological productivity between 8.5 and 7 ka BP as well as relatively enhanced river influx. While the various proxy records suggest a substantial decrease in monsoonal terrigenous influx after 7 ka BP, the productivity records remained at elevated values with better ventilated bottom waters.

El Niño Southern Oscillation (ENSO) Enhances CO2 Exchange Rates in Freshwater Marsh Ecosystems in the Florida Everglades

PubMed Central

Malone, Sparkle L.; Staudhammer, Christina L.; Oberbauer, Steven F.; Olivas, Paulo; Ryan, Michael G.; Schedlbauer, Jessica L.; Loescher, Henry W.; Starr, Gregory

2014-01-01

This research examines the relationships between El Niño Southern Oscillation (ENSO), water level, precipitation patterns and carbon dioxide (CO2) exchange rates in the freshwater wetland ecosystems of the Florida Everglades. Data was obtained over a 5-year study period (2009–2013) from two freshwater marsh sites located in Everglades National Park that differ in hydrology. At the short-hydroperiod site (Taylor Slough; TS) and the long-hydroperiod site (Shark River Slough; SRS) fluctuations in precipitation patterns occurred with changes in ENSO phase, suggesting that extreme ENSO phases alter Everglades hydrology which is known to have a substantial influence on ecosystem carbon dynamics. Variations in both ENSO phase and annual net CO2 exchange rates co-occurred with changes in wet and dry season length and intensity. Combined with site-specific seasonality in CO2 exchanges rates, El Niño and La Niña phases magnified season intensity and CO2 exchange rates at both sites. At TS, net CO2 uptake rates were higher in the dry season, whereas SRS had greater rates of carbon sequestration during the wet season. As La Niña phases were concurrent with drought years and extended dry seasons, TS became a greater sink for CO2 on an annual basis (−11 to −110 g CO2 m−2 yr−1) compared to El Niño and neutral years (−5 to −43.5 g CO2 m−2 yr−1). SRS was a small source for CO2 annually (1.81 to 80 g CO2 m−2 yr−1) except in one exceptionally wet year that was associated with an El Niño phase (−16 g CO2 m−2 yr−1). Considering that future climate predictions suggest a higher frequency and intensity in El Niño and La Niña phases, these results indicate that changes in extreme ENSO phases will significantly alter CO2 dynamics in the Florida Everglades. PMID:25521299

Recent Subsidence and Erosion at Diverse Wetland Sites in the Southeastern Mississippi Delta Plain

USGS Publications Warehouse

Morton, Robert A.; Bernier, Julie C.; Kelso, Kyle W.

2009-01-01

A prior study (U.S. Geological Survey Open-File Report 2005-1216) examined historical land- and water-area changes and estimated magnitudes of land subsidence and erosion at five wetland sites in the Terrebonne hydrologic basin of the Mississippi delta plain. The present study extends that work by analyzing interior wetland loss and relative magnitudes of subsidence and erosion at five additional wetland sites in the adjacent Barataria hydrologic basin. The Barataria basin sites were selected for their diverse physical settings and their recent (post-1978) conversion from marsh to open water. Historical aerial photography, datum-corrected marsh elevations and water depths, sediment cores, and radiocarbon dates were integrated to evaluate land-water changes in the Mississippi delta plain on both historical and geological time scales. The thickness of the organic-rich sediments (peat) and the elevation of the stratigraphic contact between peat and underlying mud were compared at marsh and open-water sites across areas of formerly continuous marsh to estimate magnitudes of recent delta-plain elevation loss caused by vertical erosion and subsidence of the wetlands. Results of these analyses indicate that erosion exceeded subsidence at most of the study areas, although both processes have contributed to historical wetland loss. Comparison of these results with prior studies indicates that subsidence largely caused rapid interior wetland loss in the Terrebonne basin before 1978, whereas erosional processes primarily caused more gradual interior wetland loss in the Barataria basin after 1978. Decadal variations in rates of relative sea-level rise at a National Ocean Service tide gage, elevation changes between repeat benchmark-leveling surveys, and GPS height monitoring at three National Geodetic Survey Continuously Operating Reference Stations indicate that subsidence rates since the early 1990s are substantially lower than those previously reported and are similar in magnitude to time-averaged subsidence rates at geological time scales. The historical decrease in land-loss rates across the Mississippi delta plain generally is consistent with the recent decrease in subsidence rates within the same region.

Distribution and abundance of stream fishes in relation to barriers: implications for monitoring stream recovery after barrier removal

USGS Publications Warehouse

Zydlewski, Joseph D.; Coghlan, Stephen M.; Gardner, C.; Saunders, R.

2011-01-01

Dams are ubiquitous in coastal regions and have altered stream habitats and the distribution and abundance of stream fishes in those habitats by disrupting hydrology, temperature regime and habitat connectivity. Dam removal is a common restoration tool, but often the response of the fish assemblage is not monitored rigorously. Sedgeunkedunk Stream, a small tributary to the Penobscot River (Maine, USA), has been the focus of a restoration effort that includes the removal of two low-head dams. In this study, we quantified fish assemblage metrics along a longitudinal gradient in Sedgeunkedunk Stream and also in a nearby reference stream. By establishing pre-removal baseline conditions and associated variability and the conditions and variability immediately following removal, we can characterize future changes in the system associated with dam removal. Over 2 years prior to dam removal, species richness and abundance in Sedgeunkedunk Stream were highest downstream of the lowest dam, lowest immediately upstream of that dam and intermediate farther upstream; patterns were similar in the reference stream. Although seasonal and annual variation in metrics within each site was substantial, the overall upstream-to-downstream pattern along the stream gradient was remarkably consistent prior to dam removal. Immediately after dam removal, we saw significant decreases in richness and abundance downstream of the former dam site and a corresponding increase in fish abundance upstream of the former dam site. No such changes occurred in reference sites. Our results show that by quantifying baseline conditions in a small stream before restoration, the effects of stream restoration efforts on fish assemblages can be monitored successfully. These data set the stage for the long-term assessment of Sedgeunkedunk Stream and provide a simple methodology for assessment in other restoration projects.

Soil methane oxidation in both dry and wet temperate eucalypt forests shows a near-identical relationship with soil air-filled porosity

NASA Astrophysics Data System (ADS)

Fest, Benedikt J.; Hinko-Najera, Nina; Wardlaw, Tim; Griffith, David W. T.; Livesley, Stephen J.; Arndt, Stefan K.

2017-01-01

Well-drained, aerated soils are important sinks for atmospheric methane (CH4) via the process of CH4 oxidation by methane-oxidising bacteria (MOB). This terrestrial CH4 sink may contribute towards climate change mitigation, but the impact of changing soil moisture and temperature regimes on CH4 uptake is not well understood in all ecosystems. Soils in temperate forest ecosystems are the greatest terrestrial CH4 sink globally. Under predicted climate change scenarios, temperate eucalypt forests in south-eastern Australia are predicted to experience rapid and extreme changes in rainfall patterns, temperatures and wild fires. To investigate the influence of environmental drivers on seasonal and inter-annual variation of soil-atmosphere CH4 exchange, we measured soil-atmosphere CH4 exchange at high-temporal resolution (< 2 h) in a dry temperate eucalypt forest in Victoria (Wombat State Forest, precipitation 870 mm yr-1) and in a wet temperature eucalypt forest in Tasmania (Warra Long-Term Ecological Research site, 1700 mm yr-1). Both forest soil systems were continuous CH4 sinks of -1.79 kg CH4 ha-1 yr-1 in Victoria and -3.83 kg CH4 ha-1 yr-1 in Tasmania. Soil CH4 uptake showed substantial temporal variation and was strongly controlled by soil moisture at both forest sites. Soil CH4 uptake increased when soil moisture decreased and this relationship explained up to 90 % of the temporal variability. Furthermore, the relationship between soil moisture and soil CH4 flux was near-identical at both forest sites when soil moisture was expressed as soil air-filled porosity (AFP). Soil temperature only had a minor influence on soil CH4 uptake. Soil nitrogen concentrations were generally low and fluctuations in nitrogen availability did not influence soil CH4 uptake at either forest site. Our data suggest that soil MOB activity in the two forests was similar and that differences in soil CH4 exchange between the two forests were related to differences in soil moisture and thereby soil gas diffusivity. The differences between forest sites and the variation in soil CH4 exchange over time could be explained by soil AFP as an indicator of soil moisture status.

Effect of CpG dinucleotides within IgH switch region repeats on immunoglobulin class switch recombination.

PubMed

Zhang, Zheng Z; Hsieh, Chih-Lin; Okitsu, Cindy Yen; Han, Li; Yu, Kefei; Lieber, Michael R

2015-08-01

Immunoglobulin (Ig) heavy chains undergo class switch recombination (CSR) to change the heavy chain isotype from IgM to IgG, A or E. The switch regions are several kilobases long, repetitive, and G-rich on the nontemplate strand. They are also relatively depleted of CpG (also called CG) sites for unknown reasons. Here we use synthetic switch regions at the IgH switch alpha (Sα) locus to test the effect of CpG sites and to try to understand why the IgH switch sequences evolved to be relatively depleted of CpG. We find that even just two CpG sites within an 80 bp synthetic switch repeat iterated 15 times (total switch region length of 1200 bp containing 30 CpG sites) are sufficient to dramatically reduce both Ig CSR and transcription through the switch region from the upstream Iα sterile transcript promoter, which is the promoter that directs transcripts through the Sα region. De novo DNA methylation occurs at the four CpG sites in and around the Iα promoter when each 80 bp Iα switch repeat contains the two CpG sites. Thus, a relatively low density of CpG sites within the switch repeats can induce upstream CpG methylation at the IgH alpha locus, and cause a substantial decrease in transcription from the sterile transcript promoter. This effect is likely the reason that switch regions evolved to contain very few CpG sites. We discuss these findings as they relate to DNA methylation and to Ig CSR. Copyright © 2015 Elsevier Ltd. All rights reserved.

A Ground-Nesting Galliform's Response to Thermal Heterogeneity: Implications for Ground-Dwelling Birds.

PubMed

Carroll, J Matthew; Davis, Craig A; Elmore, R Dwayne; Fuhlendorf, Samuel D

2015-01-01

The habitat selection choices that individuals make in response to thermal environments influence both survival and reproduction. Importantly, the way that organisms behaviorally respond to thermal environments depends on the availability and juxtaposition of sites affording tolerable or preferred microclimates. Although, ground nesting birds are especially susceptible to heat extremes across many reproductive stages (i.e., breeding, nesting, brood rearing), the mechanistic drivers of nest site selection for these species are not well established from a thermal perspective. Our goal was to assess nest site selection relative to the configuration of the thermal landscape by quantifying thermal environments available to a ground-nesting bird species inhabiting a climatically stressful environment. Using northern bobwhite (Colinus virginanus) as a model species, we measured black bulb temperature (Tbb) and vegetation parameters at 87 nests, 87 paired sites and 205 random landscape sites in Western Oklahoma during spring and summer 2013 and 2014. We found that thermal space within the study area exhibited differences in Tbb of up to 40°C during peak diurnal heating, resulting in a diverse thermal landscape available to ground-nesting birds. Within this thermally heterogeneous landscape, nest sites moderated Tbb by more than 12°C compared to random landscape sites. Furthermore, successful nests remained on average 6°C cooler than unsuccessful nests on days experiencing ambient temperatures ≥ 39°C. Models of future Tbb associated with 2080 climate change projections indicate that nesting bobwhites will face substantially greater Tbb throughout the landscape for longer durations, placing an even greater importance on thermal choices for nest sites in the future. These results highlight the capacity of landscape features to act as moderators of thermal extremes and demonstrate how thermal complexity at organism-specific scales can dictate habitat selection.

14 CFR 21.97 - Approval of major changes in type design.

Code of Federal Regulations, 2010 CFR

2010-01-01

... must submit substantiating data and necessary descriptive data for inclusion in the type design. (b... major change in type design must— (1) Provide substantiating data and necessary descriptive data for... 14 Aeronautics and Space 1 2010-01-01 2010-01-01 false Approval of major changes in type design...

Urban sprawl leaves its PAH signature

USGS Publications Warehouse

Van Metre, P.C.; Mahler, B.J.; Furlong, E.T.

2000-01-01

The increasing vehicle traffic associated with urban sprawl in the United States is frequently linked to degradation of air quality, but its effect on aquatic sediment is less well-recognized. This study evaluates trends in PAHs, a group of contaminants with multiple urban sources, in sediment cores from 10 reservoirs and lakes in six U.S. metropolitan areas. The watersheds chosen represent a range in degree and age of urbanization. Concentrations of PAHs in all 10 reservoirs and lakes increased during the past 20-40 years. PAH contamination of the most recently deposited sediment at all sites exceeded sediment-quality guidelines established by Environment Canada, in some cases by several orders of magnitude. These results add a new chapter to the story told by previous coring studies that reported decreasing concentrations of PAHs after reaching highs in the 1950s. Concurrent with the increase in concentrations is a change in the assemblage of PAHs that indicates the increasing trends are driven by combustion sources. The increase in PAH concentrations tracks closely with increases in automobile use, even in watersheds that have not undergone substantial changes in urban land-use levels since the 1970s.The increasing vehicle traffic associated with urban sprawl in the United States is frequently linked to degradation of air quality, but its effect on aquatic sediment is less well-recognized. This study evaluates trends in PAHs, a group of contaminants with multiple urban sources, in sediment cores from 10 reservoirs and lakes in six U.S. metropolitan areas. The watersheds chosen represent a range in degree and age of urbanization. Concentrations of PAHs in all 10 reservoirs and lakes increased during the past 20-40 years. PAH contamination of the most recently deposited sediment at all sites exceeded sediment-quality guidelines established by Environment Canada, in some cases by several orders of magnitude. These results add a new chapter to the story told by previous coring studies that reported decreasing concentrations of PAHs after reaching highs in the 1950s. Concurrent with the increase in concentrations is a change in the assemblage of PAHs that indicates the increasing trends are driven by combustion sources. The increase in PAH concentrations tracks closely with increases in automobile use, even in watersheds that have not undergone substantial changes in urban land-use levels since the 1970s.

Trends in pesticide concentrations in corn-belt streams, 1996-2006

USGS Publications Warehouse

Sullivan, Daniel J.; Vecchia, Aldo V.; Lorenz, David L.; Gilliom, Robert J.; Martin, Jeffrey D.

2009-01-01

Trends in the concentrations of commonly occurring pesticides in the Corn Belt of the United States were assessed, and the performance and application of several statistical methods for trend analysis were evaluated. Trends in the concentrations of 11 pesticides with sufficient data for trend assessment were assessed at up to 31 stream sites for two time periods: 1996–2002 and 2000–2006. Pesticides included in the trend analyses were atrazine, acetochlor, metolachlor, alachlor, cyanazine, EPTC, simazine, metribuzin, prometon, chlorpyrifos, and diazinon.The statistical methods applied and compared were (1) a modified version of the nonparametric seasonal Kendall test (SEAKEN), (2) a modified version of the Regional Kendall test, (3) a parametric regression model with seasonal wave (SEAWAVE), and (4) a version of SEAWAVE with adjustment for streamflow (SEAWAVE-Q). The SEAKEN test is a statistical hypothesis test for detecting monotonic trends in seasonal time-series data such as pesticide concentrations at a particular site. Trends across a region, represented by multiple sites, were evaluated using the regional seasonal Kendall test, which computes a test for an overall trend within a region by computing a score for each season at each site and adding the scores to compute the total for the region. The SEAWAVE model is a parametric regression model specifically designed for analyzing seasonal variability and trends in pesticide concentrations. The SEAWAVE-Q model accounts for the effect of changing flow conditions in order to separate changes caused by hydrologic trends from changes caused by other factors, such as pesticide use.There was broad, general agreement between unadjusted trends (no adjustment for streamflow effects) identified by the SEAKEN and SEAWAVE methods, including the regional seasonal Kendall test. Only about 10 percent of the paired comparisons between SEAKEN and SEAWAVE indicated a difference in the direction of trend, and none of these had differences significant at the 10-percent significance level. This consistency of results supports the validity and robustness of all three approaches as trend analysis tools. The SEAWAVE method is favored, however, because it has less restrictive data requirements, enabling analysis for more site/pesticide combinations, and can incorporate adjustment for streamflow (SEAWAVE-Q) with substantially fewer measurements than the flow-adjustment procedure used with SEAKEN.Analysis of flow-adjusted trends is preferable to analysis of non-adjusted trends for evaluating potential effects of changes in pesticide use or management practices because flow-adjusted trends account for the influence of flow-related variability.Analysis of flow-adjusted trends by SEAWAVE-Q showed that all of the pesticides assessed, except simazine and acetochlor, were dominated by varying degrees of concentration downtrends in one or both analysis periods. Atrazine, metolachlor, alachlor, cyanazine, EPTC, and metribuzin—all major corn herbicides, as well as prometon and chlorpyrifos, showed more prevalent concentration downtrends during 1996–2002 compared to 2000–2006. Diazinon had no clear trends during 1996–2002, but had predominantly downward trends during 2000–2006. Acetochlor trends were mixed during 1996–2002 and slightly upward during 2000–2006, but most of the trends were not statistically significant. Simazine concentrations trended upward at most sites during both 1996–2002 and 2000–2006.Comparison of concentration trends to agricultural-use trends indicated similarity in direction and magnitude for acetochlor, metolachlor, alachlor, cyanazine, EPTC, and metribuzin. Concentration downtrends for atrazine, chlorpyrifos, and diazinon were steeper than agricultural-use downtrends at some sites, indicating the possibility that agricultural management practices may have increasingly reduced transport to streams (particularly atrazine) or, for chlorpyrifos and diazinon, that nonagricultural uses declined substantially. Concentration uptrends for simazine generally were steeper than agricultural-use uptrends, indicating the possibility that nonagricultural uses of this herbicide increased during the study period.

Historical and projected carbon balance of mature black spruce ecosystems across north america: The role of carbon-nitrogen interactions

USGS Publications Warehouse

Clein, Joy S.; McGuire, A.D.; Zhang, X.; Kicklighter, D.W.; Melillo, J.M.; Wofsy, S.C.; Jarvis, P.G.; Massheder, J.M.

2002-01-01

The role of carbon (C) and nitrogen (N) interactions on sequestration of atmospheric CO2 in black spruce ecosystems across North America was evaluated with the Terrestrial Ecosystem Model (TEM) by applying parameterizations of the model in which C-N dynamics were either coupled or uncoupled. First, the performance of the parameterizations, which were developed for the dynamics of black spruce ecosystems at the Bonanza Creek Long-Term Ecological Research site in Alaska, were evaluated by simulating C dynamics at eddy correlation tower sites in the Boreal Ecosystem Atmosphere Study (BOREAS) for black spruce ecosystems in the northern study area (northern site) and the southern study area (southern site) with local climate data. We compared simulated monthly growing season (May to September) estimates of gross primary production (GPP), total ecosystem respiration (RESP), and net ecosystem production (NEP) from 1994 to 1997 to available field-based estimates at both sites. At the northern site, monthly growing season estimates of GPP and RESP for the coupled and uncoupled simulations were highly correlated with the field-based estimates (coupled: R2= 0.77, 0.88 for GPP and RESP; uncoupled: R2 = 0.67, 0.92 for GPP and RESP). Although the simulated seasonal pattern of NEP generally matched the field-based data, the correlations between field-based and simulated monthly growing season NEP were lower (R2 = 0.40, 0.00 for coupled and uncoupled simulations, respectively) in comparison to the correlations between field-based and simulated GPP and RESP. The annual NEP simulated by the coupled parameterization fell within the uncertainty of field-based estimates in two of three years. On the other hand, annual NEP simulated by the uncoupled parameterization only fell within the field-based uncertainty in one of three years. At the southern site, simulated NEP generally matched field-based NEP estimates, and the correlation between monthly growing season field-based and simulated NEP (R2 = 0.36, 0.20 for coupled and uncoupled simulations, respectively) was similar to the correlations at the northern site. To evaluate the role of N dynamics in C balance of black spruce ecosystems across North America, we simulated historical and projected C dynamics from 1900 to 2100 with a global-based climatology at 0.5?? resolution (latitude ?? longitude) with both the coupled and uncoupled parameterizations of TEM. From analyses at the northern site, several consistent patterns emerge. There was greater inter-annual variability in net primary production (NPP) simulated by the uncoupled parameterization as compared to the coupled parameterization, which led to substantial differences in inter-annual variability in NEP between the parameterizations. The divergence between NPP and heterotrophic respiration was greater in the uncoupled simulation, resulting in more C sequestration during the projected period. These responses were the result of fundamentally different responses of the coupled and uncoupled parameterizations to changes in CO2 and climate. Across North American black spruce ecosystems, the range of simulated decadal changes in C storage was substantially greater for the uncoupled parameterization than for the coupled parameterization. Analysis of the spatial variability in decadal responses of C dynamics revealed that C fluxes simulated by the coupled and uncoupled parameterizations have different sensitivities to climate and that the climate sensitivities of the fluxes change over the temporal scope of the simulations. The results of this study suggest that uncertainties can be reduced through (1) factorial studies focused on elucidating the role of C and N interactions in the response of mature black spruce ecosystems to manipulations of atmospheric CO2 and climate, (2) establishment of a network of continuous, long-term measurements of C dynamics across the range of mature black spruce ecosystems in North America, and (3) ancillary measureme

Spatial patterns in occupancy and reproduction of Golden Eagles during drought: Prospects for conservation in changing environments

USGS Publications Warehouse

Wiens, David; Kolar, Patrick; Hunt, W. Grainger; Hunt, Teresa; Fuller, Mark R.; Bell, Douglas A.

2018-01-01

We used a broad-scale sampling design to investigate spatial patterns in occupancy and breeding success of territorial pairs of Golden Eagles (Aquila chrysaetos) in the Diablo Range, California, USA, during a period of exceptional drought (2014–2016). We surveyed 138 randomly selected sample sites over 4 occasions each year and identified 199 pairs of eagles, 100 of which were detected in focal sample sites. We then used dynamic multistate modeling to identify relationships between site occupancy and reproduction of Golden Eagles relative to spatial variability in landscape composition and drought conditions. We observed little variability among years in site occupancy (3-yr mean = 0.74), but the estimated annual probability of successful reproduction was relatively low during the study period and declined from 0.39 (± 0.08 SE) to 0.18 (± 0.07 SE). Probabilities of site occupancy and reproduction were substantially greater at sample sites that were occupied by successful breeders in the previous year, indicating the presence of sites that were consistently used by successfully reproducing eagles. We found strong evidence for nonrandom spatial distribution in both occupancy and reproduction: Sites with the greatest potential for occupancy were characterized by rugged terrain conditions with intermediate amounts of grassland interspersed with patches of oak woodland and coniferous forest, whereas successful reproduction was most strongly associated with the amount of precipitation that a site received during the nesting period. Our findings highlight the contribution of consistently occupied and productive breeding sites to overall productivity of the local breeding population, and show that both occupancy and reproduction at these sites were maintained even during a period of exceptional drought. Our approach to quantifying and mapping site quality should be especially useful for the spatial prioritization of compensation measures intended to help offset the impacts of increasing human land use and development on Golden Eagles and their habitats.

Geological Impacts and Sedimentary Record of the February 27, 2010, Chile Tsunami-La Trinchera to Concepcion

USGS Publications Warehouse

Morton, Robert A.; Buckley, Mark L.; Gelfenbaum, Guy; Richmond, Bruce M.; Cecioni, Adriano; Artal, Osvaldo; Hoffmann, Constanza; Perez, Felipe

2010-01-01

The February 27, 2010, Chilean tsunami substantially altered the coastal landscape and left a permanent depositional record that may be preserved at many locales along the central coast of Chile. From April 24 to May 2, 2010, a team of U.S. Geological Survey (USGS) and Chilean scientists examined the geological impacts of the tsunami at five sites along a 200-km segment of coast centered on the earthquake epicenter. Significant observations include: (1) substantial tsunami-induced erosion and deposition (+/- 1 m) on the coastal plain; (2) erosion from return flow, inundation scour around the bases of trees, and widespread planation of the land surface; (3) tsunami sand deposits at all sites that extended to near the limit of inundation except at one site; (4) evidence of multiple strong onshore waves that arrived at different times and from different directions; (5) vegetation height and density controlled the thickness of tsunami deposits at one site, (6) the abundance of layers of plane-parallel stratification in some deposits and the presence of large bedforms at one site indicated at least some of the sediment was transported as bed load and not as suspended load; (7) shoreward transport of mud boulders and rock cobbles where they were available; and (8) the maximum tsunami inundation distance (2.35 km) was up an alluvial valley. Most of the tsunami deposits were less than 25 cm thick, which is consistent with tsunami-deposit thicknesses found elsewhere (for example, Papua New Guinea, Peru, Sumatra, Sri Lanka). Exceptions were the thick tsunami deposits near the mouths of Rio Huenchullami (La Trinchera) and Rio Maule (Constitucion), where the sediment supply was abundant. The substantial vertical erosion of the coastal plain at Constitucion

Linking benthic microbial community dynamics to diel redox variations in a near shore costal environment, Héeia Fishpond

NASA Astrophysics Data System (ADS)

Frank, K. L.; Rogers, K. L.; Wheat, C. G.; Alegado, R.

2016-12-01

Microbes play crucial roles in mediating biogeochemical cycling in coastal marine habitats. In shallow coastal ecosystems, excess primary productivity and respiration of pelagic phototrophic organisms generate striking diel variations in dissolved oxygen concentrations, leading to substantial vertical migration of redox transition zones in the sediment. However, the relationship between microbial community dynamics and the establishment of these geochemical gradients, especially over a diel time frame, remains poorly constrained. Here we examine the biogeochemical drivers of diel redox dynamics by integrating comprehensive geochemical, taxonomic, functional gene abundance, and thermodynamic datasets from Héeia Fishpond (HFP) sediment cores. HFP, an 88-acre tidally-influenced, shallow Hawaiian coastal estuarine system, is analogous to a large mesocosm embedded in a natural coastal environment, making it an ideal site for coastal biogeochemical studies. Taxonomic assessments of bacterial diversity via 16S rRNA genes revealed centimeter- scale variability with depth, with similar taxa present in all samples, but their relative abundances varied substantially among horizons. There were significant correlation between changes in geochemical composition and changes in community structure. Additionally, functional gene abundance was correlated with energy potential and aligned with activity. The taxanomic data and porewater geochemistry from HFP sediments suggest that redox variations observed in iron and sulfur speciation result from depth-related changes in microbial activity and community structure over a diel period. By linking community diversity to metabolic activity in the context of the geochemical environment, this research provides valuable insight into the connectivity of iron and sulfur metabolic modes.

The safety net medical home initiative: transforming care for vulnerable populations.

PubMed

Sugarman, Jonathan R; Phillips, Kathryn E; Wagner, Edward H; Coleman, Katie; Abrams, Melinda K

2014-11-01

Despite findings that medical homes may reduce or eliminate health care disparities among underserved and minority populations, most previous medical home pilot and demonstration projects have focused on health care delivery systems serving commercially insured patients and Medicare beneficiaries. To develop a replicable approach to support medical home transformation among diverse practices serving vulnerable and underserved populations. Facilitated by a national program team, convening organizations in 5 states provided coaching and learning community support to safety net practices over a 4-year period. To guide transformation, we developed a framework of change concepts aligned with supporting tools including implementation guides, activity checklists, and measurement instruments. Sixty-five health centers, homeless clinics, private practices, residency training centers, and other safety net practices in Colorado, Idaho, Massachusetts, Oregon, and Pennsylvania. We evaluated implementation of the change concepts using the Patient-Centered Medical Home-Assessment, and conducted a survey of participating practices to assess perceptions of the impact of the technical assistance. All practices implemented key features of the medical home model, and nearly half (47.6%) implemented the 33 identified key changes to a substantial degree as evidenced by level A Patient-Centered Medical Home-Assessment scores. Two thirds of practices that achieved substantial implementation did so only after participating in the initiative for >2 years. By the end of the initiative, 83.1% of sites achieved external recognition as medical homes. Despite resource constraints and high-need populations, safety net clinics made considerable progress toward medical home implementation when provided robust, multimodal support over a 4-year period.

Structure of Simian Immunodeficiency Virus Envelope Spikes Bound with CD4 and Monoclonal Antibody 36D5.

PubMed

Hu, Guiqing; Liu, Jun; Roux, Kenneth H; Taylor, Kenneth A

2017-08-15

The human immunodeficiency virus type 1 (HIV-1)/simian immunodeficiency virus (SIV) envelope spike (Env) mediates viral entry into host cells. The V3 loop of the gp120 component of the Env trimer contributes to the coreceptor binding site and is a target for neutralizing antibodies. We used cryo-electron tomography to visualize the binding of CD4 and the V3 loop monoclonal antibody (MAb) 36D5 to gp120 of the SIV Env trimer. Our results show that 36D5 binds gp120 at the base of the V3 loop and suggest that the antibody exerts its neutralization effect by blocking the coreceptor binding site. The antibody does this without altering the dynamics of the spike motion between closed and open states when CD4 is bound. The interaction between 36D5 and SIV gp120 is similar to the interaction between some broadly neutralizing anti-V3 loop antibodies and HIV-1 gp120. Two conformations of gp120 bound with CD4 are revealed, suggesting an intrinsic dynamic nature of the liganded Env trimer. CD4 binding substantially increases the binding of 36D5 to gp120 in the intact Env trimer, consistent with CD4-induced changes in the conformation of gp120 and the antibody binding site. Binding by MAb 36D5 does not substantially alter the proportions of the two CD4-bound conformations. The position of MAb 36D5 at the V3 base changes little between conformations, indicating that the V3 base serves as a pivot point during the transition between these two states. IMPORTANCE Glycoprotein spikes on the surfaces of SIV and HIV are the sole targets available to the immune system for antibody neutralization. Spikes evade the immune system by a combination of a thick layer of polysaccharide on the surface (the glycan shield) and movement between spike domains that masks the epitope conformation. Using SIV virions whose spikes were "decorated" with the primary cellular receptor (CD4) and an antibody (36D5) at part of the coreceptor binding site, we visualized multiple conformations trapped by the rapid freezing step, which were separated using statistical analysis. Our results show that the CD4-induced conformational dynamics of the spike enhances binding of the antibody. Copyright © 2017 American Society for Microbiology.

Determination of instream metal loads using tracer-injection and synoptic-sampling techniques, Wightman Fork, southwestern Colorado, July 1999

USGS Publications Warehouse

Ortiz, Roderick F.

2001-01-01

In July 1999, a tracer-injection study was conducted concurrently with synoptic sampling to generate mass-load profiles in Wightman Fork near the Summitville Mine site. The mine site is located in the San Juan Mountains of southwestern Colorado at an elevation of about 3,500 meters above sea level. Metal loads increased substantially along the 2,815-meter study reach along the boundary of the mine site. Spatial determinations of dissolved aluminum, copper, iron, manganese, and zinc loads were used to identify potential source areas to the stream. Overall, four source areas appeared to contribute most of the specific load at the end of the study reach. One source area was along a 60-meter reach downgradient from the toe of the North Waste Dump that generally corresponded to a region of radial faults. Another source area was a short reach that included inputs from the Summitville Water Treatment Facility and the Pump House Fault. In July 1999, seepage from the Summitville Dam Impoundment was a substantial contributor of metal load at the end of the study reach. Finally, the metal load contributed along a 60-meter reach that included Cropsy Creek is considered a substantial source of metal load to Wightman Fork.

Feasibility Study of Carbon Sequestration Through Reforestation in the Chesapeake Bay Watershed of Virginia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Andy Lacatell; David Shoch; Bill Stanley

The Chesapeake Rivers conservation area encompasses approximately 2,000 square miles of agricultural and forest lands in four Virginia watersheds that drain to the Chesapeake Bay. Consulting a time series of classified Landsat imagery for the Chesapeake Rivers conservation area, the project team developed a GIS-based protocol for identifying agricultural lands that could be reforested, specifically agricultural lands that had been without forest since 1990. Subsequent filters were applied to the initial candidate reforestation sites, including individual sites > 100 acres and sites falling within TNC priority conservation areas. The same data were also used to produce an analysis of baselinemore » changes in forest cover within the study period. The Nature Conservancy and the Virginia Department of Forestry identified three reforestation/management models: (1) hardwood planting to establish old-growth forest, (2) loblolly pine planting to establish working forest buffer with hardwood planting to establish an old-growth core, and (3) loblolly pine planting to establish a working forest. To assess the relative carbon sequestration potential of these different strategies, an accounting of carbon and total project costs was completed for each model. Reforestation/management models produced from 151 to 171 tons carbon dioxide equivalent per acre over 100 years, with present value costs of from $2.61 to $13.28 per ton carbon dioxide equivalent. The outcome of the financial analysis was especially sensitive to the land acquisition/conservation easement cost, which represented the most significant, and also most highly variable, single cost involved. The reforestation/management models explored all require a substantial upfront investment prior to the generation of carbon benefits. Specifically, high land values represent a significant barrier to reforestation projects in the study area, and it is precisely these economic constraints that demonstrate the economic additionality of any carbon benefits produced via reforestation--these are outcomes over and above what is currently possible given existing market opportunities. This is reflected and further substantiated in the results of the forest cover change analysis, which demonstrated a decline in area of land in forest use in the study area for the 1987/88-2001 period. The project team collected data necessary to identify sites for reforestation in the study area, environmental data for the determining site suitability for a range of reforestation alternatives and has identified and addressed potential leakage and additionality issues associated with implementing a carbon sequestration project in the Chesapeake Rivers Conservation Area. Furthermore, carbon emissions reductions generated would have strong potential for recognition in existing reporting systems such as the U.S. Department of Energy 1605(b) voluntary reporting requirements and the Chicago Climate Exchange. The study identified 384,398 acres on which reforestation activities could potentially be sited. Of these candidate sites, sites totaling 26,105 acres are an appropriate size for management (> 100 acres) and located in priority conservation areas identified by The Nature Conservancy. Total carbon sequestration potential of reforestation in the study area, realized over a 100 year timeframe, ranges from 58 to 66 million tons of carbon dioxide equivalent, and on the priority sites alone, potential for carbon sequestration approaches or exceeds 4 million tons of carbon dioxide equivalent. In the absence of concerted reforestation efforts, coupled with policy strategies, the region will likely face continued declines in forest land.« less

Baseline Assessment of Net Calcium Carbonate Accretion Rates on U.S. Pacific Reefs.

PubMed

Vargas-Ángel, Bernardo; Richards, Cristi L; Vroom, Peter S; Price, Nichole N; Schils, Tom; Young, Charles W; Smith, Jennifer; Johnson, Maggie D; Brainard, Russell E

2015-01-01

This paper presents a comprehensive quantitative baseline assessment of in situ net calcium carbonate accretion rates (g CaCO3 cm(-2) yr(-1)) of early successional recruitment communities on Calcification Accretion Unit (CAU) plates deployed on coral reefs at 78 discrete sites, across 11 islands in the central and south Pacific Oceans. Accretion rates varied substantially within and between islands, reef zones, levels of wave exposure, and island geomorphology. For forereef sites, mean accretion rates were the highest at Rose Atoll, Jarvis, and Swains Islands, and the lowest at Johnston Atoll and Tutuila. A comparison between reef zones showed higher accretion rates on forereefs compared to lagoon sites; mean accretion rates were also higher on windward than leeward sites but only for a subset of islands. High levels of spatial variability in net carbonate accretion rates reported herein draw attention to the heterogeneity of the community assemblages. Percent cover of key early successional taxa on CAU plates did not reflect that of the mature communities present on surrounding benthos, possibly due to the short deployment period (2 years) of the experimental units. Yet, net CaCO3 accretion rates were positively correlated with crustose coralline algae (CCA) percent cover on the surrounding benthos and on the CAU plates, which on average represented >70% of the accreted material. For foreeefs and lagoon sites combined CaCO3 accretion rates were statistically correlated with total alkalinity and Chlorophyll-a; a GAM analysis indicated that SiOH and Halimeda were the best predictor variables of accretion rates on lagoon sites, and total alkalinity and Chlorophyll-a for forereef sites, demonstrating the utility of CAUs as a tool to monitor changes in reef accretion rates as they relate to ocean acidification. This study underscores the pivotal role CCA play as a key benthic component and supporting actively calcifying reefs; high Mg-calcite exoskeletons makes CCA extremely susceptible changes in ocean water pH, emphasizing the far-reaching threat that ocean acidification poses to the ecological function and persistence of coral reefs worldwide.

Baseline Assessment of Net Calcium Carbonate Accretion Rates on U.S. Pacific Reefs

PubMed Central

Vargas-Ángel, Bernardo; Richards, Cristi L.; Vroom, Peter S.; Price, Nichole N.; Schils, Tom; Young, Charles W.; Smith, Jennifer; Johnson, Maggie D.; Brainard, Russell E.

2015-01-01

This paper presents a comprehensive quantitative baseline assessment of in situ net calcium carbonate accretion rates (g CaCO3 cm-2 yr-1) of early successional recruitment communities on Calcification Accretion Unit (CAU) plates deployed on coral reefs at 78 discrete sites, across 11 islands in the central and south Pacific Oceans. Accretion rates varied substantially within and between islands, reef zones, levels of wave exposure, and island geomorphology. For forereef sites, mean accretion rates were the highest at Rose Atoll, Jarvis, and Swains Islands, and the lowest at Johnston Atoll and Tutuila. A comparison between reef zones showed higher accretion rates on forereefs compared to lagoon sites; mean accretion rates were also higher on windward than leeward sites but only for a subset of islands. High levels of spatial variability in net carbonate accretion rates reported herein draw attention to the heterogeneity of the community assemblages. Percent cover of key early successional taxa on CAU plates did not reflect that of the mature communities present on surrounding benthos, possibly due to the short deployment period (2 years) of the experimental units. Yet, net CaCO3 accretion rates were positively correlated with crustose coralline algae (CCA) percent cover on the surrounding benthos and on the CAU plates, which on average represented >70% of the accreted material. For foreeefs and lagoon sites combined CaCO3 accretion rates were statistically correlated with total alkalinity and Chlorophyll-a; a GAM analysis indicated that SiOH and Halimeda were the best predictor variables of accretion rates on lagoon sites, and total alkalinity and Chlorophyll-a for forereef sites, demonstrating the utility of CAUs as a tool to monitor changes in reef accretion rates as they relate to ocean acidification. This study underscores the pivotal role CCA play as a key benthic component and supporting actively calcifying reefs; high Mg-calcite exoskeletons makes CCA extremely susceptible changes in ocean water pH, emphasizing the far-reaching threat that ocean acidification poses to the ecological function and persistence of coral reefs worldwide. PMID:26641885

34 CFR 395.31 - Acquisition and occupation of Federal property.

Code of Federal Regulations, 2014 CFR

2014-07-01

... design for such construction, substantial alteration, or renovation includes a satisfactory site or sites for the location and operation of a vending facility by a blind vendor. In those cases where a design... facility to be operated by a blind vendor prior to the completion of the final space layout of the building...

34 CFR 395.31 - Acquisition and occupation of Federal property.

Code of Federal Regulations, 2011 CFR

2011-07-01

... design for such construction, substantial alteration, or renovation includes a satisfactory site or sites for the location and operation of a vending facility by a blind vendor. In those cases where a design... facility to be operated by a blind vendor prior to the completion of the final space layout of the building...

34 CFR 395.31 - Acquisition and occupation of Federal property.

Code of Federal Regulations, 2012 CFR

2012-07-01

... design for such construction, substantial alteration, or renovation includes a satisfactory site or sites for the location and operation of a vending facility by a blind vendor. In those cases where a design... facility to be operated by a blind vendor prior to the completion of the final space layout of the building...

34 CFR 395.31 - Acquisition and occupation of Federal property.

Code of Federal Regulations, 2013 CFR

2013-07-01

... design for such construction, substantial alteration, or renovation includes a satisfactory site or sites for the location and operation of a vending facility by a blind vendor. In those cases where a design... facility to be operated by a blind vendor prior to the completion of the final space layout of the building...

FINE PARTICULATE MATTER SOURCE ATTRIBUTION FOR SOUTHEAST TEXAS USING 14C/13C RATIOS

EPA Science Inventory

Radiocarbon analyses of fine particulate matter samples collected during the summer of 2000 in southeast Texas indicate that a substantial fraction of the aerosol carbon at an urban/suburban site (27% to 73%) and at a rural, forested site (44% to 77%) was modern carbon. Data fr...

Species composition of regeneration after clearcutting Southern Appalachian hardwoods

Treesearch

David L. Loftis

1989-01-01

Regeneration after clearcutting of Southern Appalachian hardwood stands varies substantially in species composition not only among sites of different quality and previous-stand composition, but also among sites of similar quality and similar previous-stand composition. Severe competition from less desirable species for available growing space is cOllDlon in regenerated...

75 FR 11915 - Chrysler LLC; Trenton Engine Plant, Including On-Site Leased Workers From Caravan Knight...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-12

... workers are engaged in the production of automotive engines, a substantial portion of which are shipped to..., Michigan location of Chrysler, LLC, Trenton Engine Plant. The Department has determined that these workers... Facilities Management, LLC, working on-site at the Trenton, Michigan location of Chrysler, LLC, Trenton...

Environmental harshness, heat stress, and Marmota flaviventris.

PubMed

Webb, D R

1979-01-01

Yellow-bellied marmots (Marmota flaviventris) were studied at three sites in central Oregon. Juveniles substantially reduced their foraging activity when equivalent black-body temperatures exceeded their upper critical temperature. Inclusion of heat stress into estimates of environmental harshness drastically reduced the differences in available foraging time between high elevation and low elevation sites.

Site-specific covalent modifications of human insulin by catechol estrogens: Reactivity and induced structural and functional changes

NASA Astrophysics Data System (ADS)

Ku, Ming-Chun; Fang, Chieh-Ming; Cheng, Juei-Tang; Liang, Huei-Chen; Wang, Tzu-Fan; Wu, Chih-Hsing; Chen, Chiao-Chen; Tai, Jung-Hsiang; Chen, Shu-Hui

2016-06-01

Proteins, covalently modified by catechol estrogens (CEs), were identified recently from the blood serum of diabetic patients and referred to as estrogenized proteins. Estrogenization of circulating insulin may occur and affect its molecular functioning. Here, the chemical reactivity of CEs towards specific amino acid residues of proteins and the structural and functional changes induced by the estrogenization of insulin were studied using cyclic voltammetry, liquid chromatography-mass spectrometry, circular dichroism spectroscopy, molecular modeling, and bioassays. Our results indicate that CEs, namely, 2- and 4-hydroxyl estrogens, were thermodynamically and kinetically more reactive than the catechol moiety. Upon co-incubation, intact insulin formed a substantial number of adducts with one or multiple CEs via covalent conjugation at its Cys 7 in the A or B chain, as well as at His10 or Lys29 in the B chain. Such conjugation was coupled with the cleavage of inter-chain disulfide linkages. Estrogenization on these sites may block the receptor-binding pockets of insulin. Insulin signaling and glucose uptake levels were lower in MCF-7 cells treated with modified insulin than in cells treated with native insulin. Taken together, our findings demonstrate that insulin molecules are susceptible to active estrogenization, and that such modification may alter the action of insulin.

Restoring tides to reduce methane emissions in impounded wetlands: A new and potent Blue Carbon climate change intervention

USGS Publications Warehouse

Kroeger, Kevin D.; Crooks, Stephen; Moseman-Valtierra, Serena; Tang, Jianwu

2017-01-01

Coastal wetlands are sites of rapid carbon (C) sequestration and contain large soil C stocks. Thus, there is increasing interest in those ecosystems as sites for anthropogenic greenhouse gas emission offset projects (sometimes referred to as “Blue Carbon”), through preservation of existing C stocks or creation of new wetlands to increase future sequestration. Here we show that in the globally-widespread occurrence of diked, impounded, drained and tidally-restricted salt marshes, substantial methane (CH4) and CO2 emission reductions can be achieved through restoration of disconnected saline tidal flows. Modeled climatic forcing indicates that tidal restoration to reduce emissions has a much greater impact per unit area than wetland creation or conservation to enhance sequestration. Given that GHG emissions in tidally-restricted, degraded wetlands are caused by human activity, they are anthropogenic emissions, and reducing them will have an effect on climate that is equivalent to reduced emission of an equal quantity of fossil fuel GHG. Thus, as a landuse-based climate change intervention, reducing CH4 emissions is an entirely distinct concept from biological C sequestration projects to enhance C storage in forest or wetland biomass or soil, and will not suffer from the non-permanence risk that stored C will be returned to the atmosphere.

The Potential Effect of Sea Level Rise on Coastal Property Values

NASA Astrophysics Data System (ADS)

O'Donnell, J.

2015-12-01

It is well established that one consequence of increasing global sea level is that the frequency of flooding at low-lying coastal sites will increase. We review recent evidence that the effects coastal geometry will create substantial spatial variations in the changes in flooding frequency with scales of order 100km. Using a simple model of the evolution of coastal property values we demonstrate that a consequence of sea level rise is that the appreciation of coastal properties will peak, and then decline relative to higher properties. The time when the value reach a maximum is shown to depend upon the demand for the coastal property, and the local rate of change of flooding frequency due to sea level rise. The simple model is then extended to include, in an elementary manner, the effects on the value of adjacent but higher properties. We show that the effect of increased flooding frequency of the lower properties leads to an accelerated appreciation of the value of upland properties and an accelerated decline in the value of the coastal properties. We then provide some example calculations for selected sites. We conclude with a discussion of comparisons of the prediction of the analyses to recent data, and then comments on the impact of sea level rise on tax base of coastal communities.

When vegetation change alters ecosystem water availability.

PubMed

Scott, Russell L; Huxman, Travis E; Barron-Gafford, Greg A; Darrel Jenerette, G; Young, Jessica M; Hamerlynck, Erik P

2014-07-01

The combined effects of vegetation and climate change on biosphere-atmosphere water vapor (H2 O) and carbon dioxide (CO2 ) exchanges are expected to vary depending, in part, on how biotic activity is controlled by and alters water availability. This is particularly important when a change in ecosystem composition alters the fractional covers of bare soil, grass, and woody plants so as to influence the accessibility of shallower vs. deeper soil water pools. To study this, we compared 5 years of eddy covariance measurements of H2 O and CO2 fluxes over a riparian grassland, shrubland, and woodland. In comparison with the surrounding upland region, groundwater access at the riparian sites increased net carbon uptake (NEP) and evapotranspiration (ET), which were sustained over more of the year. Among the sites, the grassland used less of the stable groundwater resource, and increasing woody plant density decoupled NEP and ET from incident precipitation (P), resulting in greater exchange rates that were less variable year to year. Despite similar gross patterns, how groundwater accessibility affected NEP was more complex than ET. The grassland had higher respiration (Reco ) costs. Thus, while it had similar ET and gross carbon uptake (GEP) to the shrubland, grassland NEP was substantially less. Also, grassland carbon fluxes were more variable due to occasional flooding at the site, which both stimulated and inhibited NEP depending upon phenology. Woodland NEP was large, but surprisingly similar to the less mature, sparse shrubland, even while having much greater GEP. Woodland Reco was greater than the shrubland and responded strongly and positively to P, which resulted in a surprising negative NEP response to P. This is likely due to the large accumulation of carbon aboveground and in the surface soil. These long-term observations support the strong role that water accessibility can play when determining the consequences of ecosystem vegetation change. © 2013 John Wiley & Sons Ltd.

Climate and soil-age constraints on nutrient uplift and retention by plants.

PubMed

Porder, Stephen; Chadwick, Oliver A

2009-03-01

Plants and soils represent coevolving components of ecosystems, and while the effects of soils (e.g., nutrient availability) on plants have been extensively documented, the effect of plants on soils has received less attention. Furthermore there has been no systematic investigation of how plant effects vary across important ecological gradients in climate or soil age, which leaves a substantial gap in our understanding of how plant-soil systems develop. In this context, we analyzed changes in nutrient availability and elemental losses from the entire weathering zone at 35 sites arrayed across climatic and soil-age gradients on the island of Hawai'i. The sites are located on three basaltic lava flows (ages 10, 170, and 350 kyr) each of which crosses a precipitation gradient from approximately 500 to 2500 mm/yr. By comparing the loss of nutrient (potassium, phosphorus) and non-nutrient (e.g., sodium) rock-derived elements, we identify a climatic zone at intermediate rainfall where the retention of plant nutrients in the upper soil is most pronounced. We further show that there are several abiotic constraints on plant-driven retention of nutrients. At the dry sites (< or = 750 mm/yr on all three flows), plants slow the loss of nutrients, but the effect (as measured by the difference between K and Na losses) is small, perhaps because of low plant cover and productivity. At intermediate rainfall (750-1400 mm/yr) but negative water balance, plants substantially enrich both nutrient cations and P relative to Na in the surface horizons, an effect that remains strong even after 350 kyr of soil development. In contrast, at high rainfall (> or = 1500 mm/yr) and positive water balance, the effect of plants on nutrient distributions diminishes with soil age as leaching losses overwhelm the uplift and retention of nutrients by plants after 350 kyr of soil development. The effect of plants on soil nutrient distributions can also be mediated by the movement of iron (Fe), and substantial Fe losses at high rainfall on the older flows are highly correlated with P losses. Thus redox-driven redistribution of Fe may place a further abiotic constraint on nutrient retention by plants. In combination, these data indicate that the effects of soil aging on plant uplift and retention of nutrients differ markedly with precipitation, and we view this as a potentially fruitful area for future research.

14 CFR 204.5 - Certificated and commuter air carriers undergoing or proposing to undergo substantial change in...

Code of Federal Regulations, 2010 CFR

2010-01-01

... undergoing or proposing to undergo substantial change in operations, ownership, or management. 204.5 Section... operations, ownership or management shall file the data set forth in § 204.3. These data must be submitted in... operations, management, or ownership, including changes that may affect the air carrier's citizenship, shall...

Processes for treating cellulosic material

NASA Technical Reports Server (NTRS)

Kohlman, Karen L. (Inventor); Weil, Joseph R. (Inventor); Westgate, Paul L. (Inventor); Ladisch, Michael R. (Inventor); Yang, Yiqi (Inventor)

1998-01-01

Disclosed are processes for pretreating cellulosic materials in liquid water by heating the materials in liquid water at a temperature at or above their glass transition temperature but not substantially exceeding 220.degree. C., while maintaining the pH of the reaction medium in a range that avoids substantial autohydrolysis of the cellulosic materials. Such pretreatments minimize chemical changes to the cellulose while leading to physical changes which substantially increase susceptibility to hydrolysis in the presence of cellulase.

Intrinsic Remediation Engineering Evaluation/Cost Analysis for UST Site 870. Hill Air Force Base, Ogden, Utah

DTIC Science & Technology

1995-06-01

ground water temperature readings. Temperature affects the types and growth rates of bacteria that can be supported in the ground water environment...vaies for hydrogeologic conditions similar to those found at the site. The results of this study suggest that dissolved-phase BTEX contamination...OC information to help substantiate the overall site conditions . Please 0 address. Response: Sample depth designations have been clarified in Table

23. Photographic copy of an asconstructed site plan for North ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

23. Photographic copy of an as-constructed site plan for North Base: Air Force Flight Test Center, Edwards Air Force Base, Edwards, California: North Base Site Plan, February 1970. This drawing shows the North Base building distribution substantially as it appears in 1995. Records on file at AFFTC/CE-CECC-B (Design/Construction Flight/RPMC), Edwards AFB, California. - Edwards Air Force Base, North Base, North Base Road, Boron, Kern County, CA

A major change in North Atlantic deep water circulation 1.6 million years ago

NASA Astrophysics Data System (ADS)

Khélifi, N.; Frank, M.

2014-07-01

The global ocean-climate system has been highly sensitive to the formation and advection of deep overflow water from the Nordic Seas as integral part of the Atlantic Meridional Overturning Circulation (AMOC) but its evolution over the Pliocene-Pleistocene global cooling is not fully understood. In particular, changes in the sources and mixing of prevailing deep waters that were involved in driving overturning throughout the Pliocene-Pleistocene climate transitions are not well constrained. Here we investigate the evolution of a substantial deep southward return overflow of the AMOC over the last 4 million years. We present new records of the bottom-water radiogenic neodymium isotope (ϵNd) variability obtained from three sediment cores (DSDP site 610 and ODP sites 980/981 and 900) at water depths between 2170 and 5050 m in the northeast Atlantic. We find that prior to the onset of major Northern Hemisphere glaciation (NHG) ∼3 million years ago (Ma), ϵNd values primarily oscillated between -9 and -11 at all sites, consistent with enhanced vertical mixing and weak stratification of the water masses during the warmer-than-today Pliocene period. From 2.7 Ma to ∼2.0 Ma, the ϵNd signatures of the water masses gradually became more distinct, which documents a significant advection of Nordic Seas overflow deep water coincident with the intensification of NHG. Most markedly, however, at ∼1.6 Ma the interglacial ϵNd signatures at sites 610 (2420 m water depth (w.d.)) and 980/981 (2170 m w.d.) synchronously and permanently shifted by 2 to 3 ϵNd units to less radiogenic values, respectively. Since then the difference between glacial and interglacial ϵNd values has been similar to the Late Quaternary at each site. A decrease of ∼2ϵNd units at 1.6 Ma was also recorded for the deepest water masses by site 900 (∼5050 m w.d.), which thereafter, however, evolved to more radiogenic values again until the present. This major ϵNd change across the 1.6 Ma transition reflects a significant reorganization of the overturning circulation in the northeast Atlantic paving the way for the more stratified water column with distinct water masses prevailing thereafter.

Examining spatial patterns in polycyclic aromatic compounds measured in stream macroinvertebrates near a small subarctic oil and gas operation.

PubMed

Korosi, J B; Eickmeyer, D C; Chin, K S; Palmer, M J; Kimpe, L E; Blais, J M

2016-03-01

The Cameron River runs through a small, remote petrochemical development in the Cameron Hills (Northwest Territories, Canada). In order to evaluate the exposure of aquatic biota to contaminants from oil and gas activities, we measured polycyclic aromatic compounds (PACs) in macroinvertebrates collected from sites and tributaries along the Cameron River, including upstream and downstream of the development, and sites located near drilled wells (developed). Macroinvertebrate tissue PAC burdens ranged from 0.2-2.8 μg g(-1) lipid for unsubstituted compounds, and from 4.2-63.2 μg g(-1) lipid for alkylated compounds, relatively low compared to similar studies from more industrialized regions in North America. There was no significant difference in tissue PAC burdens between upstream, downstream, or developed sites (p = 0.12), although alkyl PACs in five out of seven developed sites were higher than the regional average. Petrogenic PACs were dominant in most samples, including alkyl fluorines, alkyl phenanthrene/anthracenes, and alkyl dibenzothiophenes. Minimal changes in PAC composition in macroinvertebrate tissues were detected along the Cameron River, with the exception of the two sites furthest downstream that had high concentrations of C3-C4 naphthalene. Overall, our results suggest that oil and gas development in the Cameron Hills has not resulted in substantial increases in PAC bioaccumulation in stream macroinvertebrates, although the potential that alkyl naphthalenes are being transported downstream from the development warrants further attention.

Geospatial strategy for sustainable management of municipal solid waste for growing urban environment.

PubMed

Pandey, Prem Chandra; Sharma, Laxmi Kant; Nathawat, Mahendra Singh

2012-04-01

This paper presents the implementation of a Geospatial approach for improving the Municipal Solid Waste (MSW) disposal suitability site assessment in growing urban environment. The increasing trend of population growth and the absolute amounts of waste disposed of worldwide have increased substantially reflecting changes in consumption patterns, consequently worldwide. MSW is now a bigger problem than ever. Despite an increase in alternative techniques for disposing of waste, land-filling remains the primary means. In this context, the pressures and requirements placed on decision makers dealing with land-filling by government and society have increased, as they now have to make decisions taking into considerations environmental safety and economic practicality. The waste disposed by the municipal corporation in the Bhagalpur City (India) is thought to be different from the landfill waste where clearly scientific criterion for locating suitable disposal sites does not seem to exist. The location of disposal sites of Bhagalpur City represents the unconsciousness about the environmental and public health hazards arising from disposing of waste in improper location. Concerning about urban environment and health aspects of people, a good method of waste management and appropriate technologies needed for urban area of Bhagalpur city to improve this trend using Multi Criteria Geographical Information System and Remote Sensing for selection of suitable disposal sites. The purpose of GIS was to perform process to part restricted to highly suitable land followed by using chosen criteria. GIS modeling with overlay operation has been used to find the suitability site for MSW.

Terrestrial N Cycling And C Storage: Some Insights From A Process-based Land Surface Model

NASA Astrophysics Data System (ADS)

Zaehle, S.; Friend, A. D.; Friedlingstein, P.

2008-12-01

We present results of a new land surface model, O-CN, which includes a process-based coupling between the terrestrial cycling of energy, water, carbon, and nitrogen. The model represents the controls of the terrestrial nitrogen (N) cycling on carbon (C) pools and fluxes through photosynthesis, respiration, changes in allocation, and soil organic matter decomposition, and explicitly accounts for N leaching and gaseous losses. O-CN has been shown to give realistic results in comparison to observations at a wide range of scales, including in situ flux measurements, productivity databases, and atmospheric CO2 concentration data. O-CN is run for three free air carbon dioxide enrichment (FACE) sites (Duke, Oak Ridge, Aspen), and reproduces observed magnitudes of changes in net primary productivity, foliage area and foliage N content. Several alternative hypotheses concerning the control of N on vegetation growth and decomposition, including effects of diluting foliage N concentrations, down-regulation of photosynthesis and respiration, acclimation of C allocation patterns and biological N fixation, are tested with respect to their effect on long- term C sequestration estimate. Differences in initial N availability, small transient changes in N inputs and the assumed plasticity of C:N stoichiometry can lead to substantial differences in the simulated long-term changes in productivity and C sequestration. We discuss the capacity of observations obtained at FACE sites to evaluate these alternative hypotheses, and investigate implications of a transient versus instantaneous increase in atmospheric carbon dioxide for the magnitude of the simulated limiting effect of N on C cycling. Finally, we re-examine earlier model-based assessments of the terrestrial C sequestration potential using a global transient O-CN simulation driven by increases in atmospheric CO2, N deposition and climatic changes over the 21st century.

Prevention of EP Migratory Contamination in a Cluster Randomized Trial to Increase tPA Use in Stroke (The INSTINCT Trial)

PubMed Central

Weston, Victoria C.; Meurer, William J.; Frederiksen, Shirley M.; Fox, Allison K.; Scott, Phillip A.

2016-01-01

Objectives Cluster randomized trials (CRTs) are increasingly utilized to evaluate quality improvement interventions aimed at healthcare providers. In trials testing emergency department interventions, migration of emergency physicians (EPs) between hospitals is an important concern, as contamination may affect both internal and external validity. We hypothesized that geographically isolating emergency departments would prevent migratory contamination in a CRT designed to increase ED delivery of tPA in stroke (The INSTINCT Trial). Methods INSTINCT was a prospective, cluster randomized, controlled trial. 24 Michigan community hospitals were randomly selected in matched pairs for study. Contamination was defined at the cluster level, with substantial contamination defined a priori as >10% of EPs affected. Non-adherence, total crossover (contamination + non-adherence), migration distance and characteristics were determined. Results 307 emergency physicians were identified at all sites. Overall, 7 (2.3%) changed study sites. 1 moved between control sites, leaving 6 (2.0%) total crossovers. Of these, 2 (0.7%) moved from intervention to control (contamination) and 4 (1.3%) moved from control to intervention (non-adherence). Contamination was observed in 2 of 12 control sites, with 17% and 9% contamination of the total site EP workforce at follow-up, respectively. Average migration distance was 42 miles for all EPs moving in the study and 35 miles for EPs moving from intervention to control sites. Conclusion The mobile nature of emergency physicians should be considered in the design of quality improvement CRTs. Increased reporting of contamination in CRTs is encouraged to clarify thresholds and facilitate CRT design. PMID:25440230

Prioritization methodology for the decommissioning of nuclear facilities: a study case on the Iraq former nuclear complex.

PubMed

Jarjies, Adnan; Abbas, Mohammed; Monken Fernandes, Horst; Wong, Melanie; Coates, Roger

2013-05-01

There are a number of sites in Iraq which have been used for nuclear activities and which contain potentially significant amounts of radioactive waste. The principal nuclear site being Al-Tuwaitha. Many of these sites suffered substantial physical damage during the Gulf Wars and have been subjected to subsequent looting. All require decommissioning in order to ensure both radiological and non-radiological safety. However, it is not possible to undertake the decommissioning of all sites and facilities at the same time. Therefore, a prioritization methodology has been developed in order to aid the decision-making process. The methodology comprises three principal stages of assessment: i) a quantitative surrogate risk assessment ii) a range of sensitivity analyses and iii) the inclusion of qualitative modifying factors. A group of Tuwaitha facilities presented the highest risk among the evaluated ones, followed by a middle ranking grouping of Tuwaitha facilities and some other sites, and a relatively large group of lower risk facilities and sites. The initial order of priority is changed when modifying factors are taken into account. It has to be considered the Iraq's isolation from the international nuclear community over the last two decades and the lack of experienced personnel. Therefore it is appropriate to initiate decommissioning operations on selected low risk facilities at Tuwaitha in order to build capacity and prepare for work to be carried out in more complex and potentially high hazard facilities. In addition it is appropriate to initiate some prudent precautionary actions relating to some of the higher risk facilities. Copyright © 2012 Elsevier Ltd. All rights reserved.

Population bottlenecks, genetic diversity and breeding ability of the three-spined stickleback (Gasterosteus aculeatus) from three polluted English Rivers.

PubMed

Santos, Eduarda M; Hamilton, Patrick B; Coe, Tobias S; Ball, Jonathan S; Cook, Alastair C; Katsiadaki, Ioanna; Tyler, Charles R

2013-10-15

Pollution is a significant environmental pressure on fish populations in both freshwater and marine environments. Populations subjected to chronic exposure to pollutants can experience impacts ranging from altered reproductive capacity to changes in population genetic structure. Few studies, however, have examined the reproductive vigor of individuals within populations inhabiting environments characterized by chronic pollution. In this study we undertook an analysis of populations of three-spined sticklebacks (Gasterosteus aculeatus) from polluted sites, to determine levels of genetic diversity, assess for evidence of historic population genetic bottlenecks and determine the reproductive competitiveness of males from these locations. The sites chosen included locations in the River Aire, the River Tees and the River Birket, English rivers that have been impacted by pollution from industrial and/or domestic effluents for over 100 years. Male reproductive competitiveness was determined via competitive breeding experiments with males and females derived from a clean water site, employing DNA microsatellites to determine parentage outcome. Populations of stickleback collected from the three historically polluted sites showed evidence of recent population bottlenecks, although only the River Aire population showed low genetic diversity. In contrast, fish collected from two relatively unpolluted sites within the River Gowy and Houghton Springs showed weak, or no evidence of such bottlenecks. Nevertheless, males derived from polluted sites were able to reproduce successfully in competition with males derived from clean water exposures, indicating that these bottlenecks have not resulted in any substantial loss of reproductive fitness in males. Copyright © 2013 Elsevier B.V. All rights reserved.

Hotspots of Malaria Transmission in the Peruvian Amazon: Rapid Assessment through a Parasitological and Serological Survey

PubMed Central

Rosas-Aguirre, Angel; Speybroeck, Niko; Llanos-Cuentas, Alejandro; Rosanas-Urgell, Anna; Carrasco-Escobar, Gabriel; Rodriguez, Hugo; Gamboa, Dionicia; Contreras-Mancilla, Juan; Alava, Freddy; Soares, Irene S.; Remarque, Edmond; D´Alessandro, Umberto; Erhart, Annette

2015-01-01

Background With low and markedly seasonal malaria transmission, increasingly sensitive tools for better stratifying the risk of infection and targeting control interventions are needed. A cross-sectional survey to characterize the current malaria transmission patterns, identify hotspots, and detect recent changes using parasitological and serological measures was conducted in three sites of the Peruvian Amazon. Material and Methods After full census of the study population, 651 participants were interviewed, clinically examined and had a blood sample taken for the detection of malaria parasites (microscopy and PCR) and antibodies against P. vivax (PvMSP119, PvAMA1) and P. falciparum (PfGLURP, PfAMA1) antigens by ELISA. Risk factors for malaria infection (positive PCR) and malaria exposure (seropositivity) were assessed by multivariate survey logistic regression models. Age-specific seroprevalence was analyzed using a reversible catalytic conversion model based on maximum likelihood for generating seroconversion rates (SCR, λ). SaTScan was used to detect spatial clusters of serology-positive individuals within each site. Results The overall parasite prevalence by PCR was low, i.e. 3.9% for P. vivax and 6.7% for P. falciparum, while the seroprevalence was substantially higher, 33.6% for P. vivax and 22.0% for P. falciparum, with major differences between study sites. Age and location (site) were significantly associated with P. vivax exposure; while location, age and outdoor occupation were associated with P. falciparum exposure. P. falciparum seroprevalence curves showed a stable transmission throughout time, while for P. vivax transmission was better described by a model with two SCRs. The spatial analysis identified well-defined clusters of P. falciparum seropositive individuals in two sites, while it detected only a very small cluster of P. vivax exposure. Conclusion The use of a single parasitological and serological malaria survey has proven to be an efficient and accurate method to characterize the species specific heterogeneity in malaria transmission at micro-geographical level as well as to identify recent changes in transmission. PMID:26356311

A combined approach for the evaluation of a volatile organic compound emissions inventory.

PubMed

Choi, Yu-Jin; Calabrese, Richard V; Ehrman, Sheryl H; Dickerson, Russell R; Stehr, Jeffrey W

2006-02-01

Emissions inventories significantly affect photochemical air quality model performance and the development of effective control strategies. However, there have been very few studies to evaluate their accuracy. Here, to evaluate a volatile organic compound (VOC) emissions inventory, we implemented a combined approach: comparing the ratios of carbon bond (CB)-IV VOC groups to nitrogen oxides (NOx) or carbon monoxide (CO) using an emission preprocessing model, comparing the ratios of VOC source contributions from a source apportionment technique to NOx or CO, and comparing ratios of CB-IV VOC groups to NOx or CO and the absolute concentrations of CB-IV VOC groups using an air quality model, with the corresponding ratios and concentrations observed at three sites (Maryland, Washington, DC, and New Jersey). The comparisons of the ethene/NOx ratio, the xylene group (XYL)/NOx ratio, and ethene and XYL concentrations between estimates and measurements showed some differences, depending on the comparison approach, at the Maryland and Washington, DC sites. On the other hand, consistent results at the New Jersey site were observed, implying a possible overestimation of vehicle exhaust. However, in the case of the toluene group (TOL), which is emitted mainly from surface coating and printing sources in the solvent utilization category, the ratios of TOL/ NOx or CO, as well as the absolute concentrations revealed an overestimate of these solvent sources by a factor of 1.5 to 3 at all three sites. In addition, the overestimate of these solvent sources agreed with the comparisons of surface coating and printing source contributions relative to NOx from a source apportionment technique to the corresponding value of estimates at the Maryland site. Other studies have also suggested an overestimate of solvent sources, implying a possibility of inaccurate emission factors in estimating VOC emissions from surface coating and printing sources. We tested the impact of these overestimates with a chemical transport model and found little change in ozone but substantial changes in calculated secondary organic aerosol concentrations.

Climate change implications of shifting forest management strategy in a boreal forest ecosystem of Norway.

PubMed

Bright, Ryan M; Antón-Fernández, Clara; Astrup, Rasmus; Cherubini, Francesco; Kvalevåg, Maria; Strømman, Anders H

2014-02-01

Empirical models alongside remotely sensed and station measured meteorological observations are employed to investigate both the local and global direct climate change impacts of alternative forest management strategies within a boreal ecosystem of eastern Norway. Stand-level analysis is firstly executed to attribute differences in daily, seasonal, and annual mean surface temperatures to differences in surface intrinsic biophysical properties across conifer, deciduous, and clear-cut sites. Relative to a conifer site, a slight local cooling of −0.13 °C at a deciduous site and −0.25 °C at a clear-cut site were observed over a 6-year period, which were mostly attributed to a higher albedo throughout the year. When monthly mean albedo trajectories over the entire managed forest landscape were taken into consideration, we found that strategies promoting natural regeneration of coniferous sites with native deciduous species led to substantial global direct climate cooling benefits relative to those maintaining current silviculture regimes – despite predicted long-term regional warming feedbacks and a reduced albedo in spring and autumn months. The magnitude and duration of the cooling benefit depended largely on whether management strategies jointly promoted an enhanced material supply over business-as-usual levels. Expressed in terms of an equivalent CO2 emission pulse at the start of the simulation, the net climate response at the end of the 21st century spanned −8 to −159 Tg-CO2-eq., depending on whether near-term harvest levels increased or followed current trends, respectively. This magnitude equates to approximately −20 to −300% of Norway's annual domestic (production) emission impact. Our analysis supports the assertion that a carbon-only focus in the design and implementation of forest management policy in boreal and other climatically similar regions can be counterproductive – and at best – suboptimal if boreal forests are to be used as a tool to mitigate global warming.

Effects of particulate air pollution on the respiratory health of subjects who live in three areas in Kanpur, India.

PubMed

Sharma, Mukesh; Kumar, V Narendra; Katiyar, Subodh K; Sharma, Richa; Shukla, Bhanu P; Sengupta, Babu

2004-07-01

In this study, the authors assessed the relationship between daily changes in respiratory health and particulate levels with diameters of (a) less than 10 microm (PM10) and (b) less than 2.5 microm (PM2.5) in Kanpur, India. The subjects (N = 91) were recruited from 3 areas in Kanpur: (1) Indian Institute of Technology (Kanpur), which was a relatively clean area; (b) Vikas Nagar, a typical commercial area; and (c) finally, the residential area of Juhilal Colony. All subjects resided near to air quality monitoring sites. Air quality and peak expiratory flow rate samplings were conducted for 39 d. Once during the sampling period, lung-function tests (i.e., forced expiratory volume in 1 s, forced vital capacity) were performed on each subject. Subjects who resided at the clean site performed at predicted (i.e., acceptable) values more often than did subjects who lived at the remaining 2 sites. Subjects who lived at all 3 sites demonstrated a substantial average deficit in baseline forced vital capacity and forced expiratory volume in 1 s values. The authors used a statistical model to estimate that an increase of 100 microg/m3 of the pollutant PM10 could reduce the mean peak expiratory flow rate of an individual by approximately 3.2 l/min.

Natural attenuation processes for remediation of arsenic contaminated soils and groundwater.

PubMed

Wang, Suiling; Mulligan, Catherine N

2006-12-01

Arsenic (As) contamination presents a hazard in many countries. Natural attenuation (NA) of As-contaminated soils and groundwater may be a cost-effective in situ remedial option. It relies on the site intrinsic assimilative capacity and allows in-place cleanup. Sorption to solid phases is the principal mechanism immobilizing As in soils and removing it from groundwater. Hydroxides of iron, aluminum and manganese, clay and sulfide minerals, and natural organic matter are commonly associated with soils and aquifer sediments, and have been shown to be significant As adsorbents. The extent of sorption is influenced by As speciation and the site geochemical conditions such as pH, redox potential, and the co-occurring ions. Microbial activity may catalyze the transformation of As species, or mediate redox reactions thus influencing As mobility. Plants that are capable of hyperaccumulating As may translocate As from contaminated soils and groundwater to their tissues, providing the basis for phytoremediation. However, NA is subject to hydrological changes and may take substantial periods of time, thus requiring long-term monitoring. The current understanding of As NA processes remains limited. Sufficient site characterization is critical to the success of NA. Further research is required to develop conceptual and mathematical models to predict the fate and transport of As and to evaluate the site NA capacity. Engineering enhanced NA using environmentally benign products may be an effective alternative.

Activity and structure of human acetyl-CoA carboxylase targeted by a specific inhibitor.

PubMed

Jang, SoRi; Gornicki, Piotr; Marjanovic, Jasmina; Bass, Ethan; Lurcotta, Toni; Rodriguez, Pedro; Austin, Jotham; Haselkorn, Robert

2018-05-17

We have studied a series of human acetyl CoA-carboxylase (ACC) 1 and ACC2 proteins with deletions and/or Ser to Ala substitutions of the known phosphorylation sites. In vitro dephosphorylation/phosphorylation experiments reveal a substantial level of phosphorylation of human ACCs produced in insect cells. Our results are consistent with AMPK phosphorylation of Ser 29, Ser 80 , Ser 1,201 and Ser 1,216 . Phosphorylation of the N-terminal regulatory domain decreases ACC1 activity, while phosphorylation of residues in the ACC central domain has no effect. Inhibition of the activity by phosphorylation is significantly more profound at citrate concentrations below 2 mM. Furthermore, deletion of the N-terminal domain facilitates structural changes induced by citrate, including conversion of ACC dimers to linear polymers. We have also identified ACC2 amino acid mutations affecting specific inhibition of the isozyme by compound CD-017-0191. They form two clusters separated by 60-90 Å: one located in the vicinity of the BC active site and the other one in the vicinity of the ACC1 phosphorylation sites in the central domain, suggesting a contribution of the interface of two ACC dimers in the polymer to the inhibitor binding site. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Developments toward a Low-Cost Approach for Long-Term, Unattended Vapor Intrusion Monitoring

PubMed Central

Tolley, William K.

2014-01-01

There are over 450,000 sites contaminated by chemicals in the US. This large number of contaminated sites and the speed of subsurface migration of chemicals pose considerable risk to nearby residences and commercial buildings. The high costs for monitoring around these site stem from the labor involved in placing and replacing the passive sorbent vapor samplers and the resultant laboratory analysis. This monitoring produces sparse data sets that do not track temporal changes well. To substantially reduce costs and better track exposures, less costly, unattended systems for monitoring soil gases and vapor intrusion into homes and businesses are desirable to aid in the remediation of contaminated sites. This paper describes progress toward the development of an inexpensive system specifically for monitoring vapor intrusion; the system can operate repeatedly without user intervention with low detection limits (1 × 10−9, or 1 part-per-billion). Targeted analytes include chlorinated hydrocarbons (dichloroethylene, trichloroethane, trichloroethylene, and perchloroethylene) and benzene. The system consists of a trap-and-purge preconcentrator for vapor collection in conjunction with a compact gas chromatography instrument to separate individual compounds. Chemical detection is accomplished with an array of chemicapacitors and a metal-oxide semiconductor combustibles sensor. Both the preconcentrator and the chromatography column are resistively heated. All components are compatible with ambient air, which serves as the carrier gas for the gas chromatography and detectors. PMID:24903107

Diurnal variability of polycyclic aromatic compound (PAC) concentrations: Relationship with meteorological conditions and inferred sources

NASA Astrophysics Data System (ADS)

Alam, Mohammed S.; Keyte, Ian J.; Yin, Jianxin; Stark, Christopher; Jones, Alan M.; Harrison, Roy M.

2015-12-01

Polycyclic aromatic hydrocarbons (PAH) and their nitro and oxy derivatives have been sampled every three hours over one week in winter at two sites in Birmingham UK. One site is heavily influenced by road traffic and is close to residential dwellings, while the other site is a background urban location at some distance from both sources of emission. The time series of concentrations has been examined along with the ratio of concentrations between the two sampling sites. A comparison of averaged diurnal profiles has shown different patterns of behaviour which has been investigated through calculating ratios of concentration at 18:00-21:00 h relative to that at 06:00-09:00 h. This allows identification of those compounds with a strong contribution to a traffic-related maximum at 06:00-09:00 h which are predominantly the low molecular weight PAHs, together with a substantial group of quinones and nitro-PAHs. Changes in partitioning between vapour and particulate forms are unlikely to influence the ratio as the mean temperature at both times was almost identical. Most compounds show an appreciable increase in concentrations in the evening which is attributed to residential heating emissions. Compounds dominated by this source show high ratios of 18:00-21:00 concentrations relative to 06:00-09:00 concentrations and include higher molecular weight PAH and a substantial group of both quinones and nitro-PAH. The behaviour of retene, normally taken as an indicator of biomass burning, is suggestive of wood smoke only being one contributor to the evening peak in PAH and their derivatives, with coal combustion presumably being the other main contributor. Variations of PAH concentrations with wind speed show a dilution behaviour consistent with other primary pollutants, and high concentrations of a range of air pollutants were observed in an episode of low temperatures and low wind speeds towards the end of the overall sampling period consistent with poor local dispersion processes. Results from a short summer campaign give indications of the formation of some nitro-PAH by atmospheric chemical reactions.

The androgen receptor gene mutations database.

PubMed

Gottlieb, B; Trifiro, M; Lumbroso, R; Vasiliou, D M; Pinsky, L

1996-01-01

The current version of the androgen receptor (AR) gene mutations database is described. We have added (if available) data on the androgen binding phenotype of the mutant AR, the clinical phenotype of the affected persons, the family history and whether the pathogenicity of a mutation has been proven. Exonic mutations are now listed in 5'-->3' sequence regardless of type and single base pair changes are presented in codon context. Splice site and intronic mutations are listed separately. The database has allowed us to substantiate and amplify the observation of mutational hot spots within exons encoding the AR androgen binding domain. The database is available from EML (ftp://www.ebi.ac.uk/pub/databases/androgen) or as a Macintosh Filemaker file (MC33@musica.mcgill.ca).

Land-level changes from a late Holocene earthquake in the northern Puget lowland, Washington

USGS Publications Warehouse

Kelsey, H.M.; Sherrod, B.; Johnson, S.Y.; Dadisman, S.V.

2004-01-01

An earthquake, probably generated on the southern Whidbey Island fault zone, caused 1-2 m of ground-surface uplift on central Whidbey Island ???2800-3200 yr ago. The cause of the uplift is a fold that grew coseismically above a blind fault that was the earthquake source. Both the fault and the fold at the fault's tip are imaged on multichannel seismic refection profiles in Puget Sound immediately east of the central Whidbey Island site. Uplift is documented through contrasting histories of relative sea level at two coastal marshes on either side of the fault. Late Holocene shallow-crustal earthquakes of Mw = 6.5-7 pose substantial seismic hazard to the northern Puget Lowland. ?? 2004 Geological Society of America.

Pharmaceutical company sponsored disease management programs: an alternative for tax-exempt MCOs and hospitals.

PubMed

Jedrey, Christopher M; Chaurette, Katherine A; Winn, Lara Beth

2002-01-01

On April 25, 2002, the Internal Revenue Service finalized the proposed Corporate Sponsorship regulations. The changes made in the final regulations pertain to the proposed $79 ceiling on disregarded benefits, the 2 percent threshold for disregarded benefits, the scope of disregarded benefits, Web site hyperlinks, the inclusion of certain electronic publications in the definition of periodicals, the valuation date for substantial return benefits, and the scope of use or acknowledgement. The proposed regulations were discussed in the Winter 2002 issue of Managed Care Quarterly in an article titled the same as this one. This article is based on the final IRS regulations and therefore supersedes the original article published in the Winter 2002 issue.

Investigation of total and hexavalent chromium in filtered and unfiltered groundwater samples at the Tucson International Airport Superfund Site

USGS Publications Warehouse

Tillman, Fred; McCleskey, R. Blaine; Hermosillo, Edyth

2016-01-01

Potential health effects from hexavalent chromium in groundwater have recently become a concern to regulators at the Tucson International Airport Area Superfund site. In 2016, the U.S. Geological Survey sampled 46 wells in the area to characterize the nature and extent of chromium in groundwater, to understand what proportion of total chromium is in the hexavalent state, and to determine if substantial differences are present between filtered and unfiltered chromium concentrations. Results indicate detectable chromium concentrations in all wells, over 75 % of total chromium is in the hexavalent state in a majority of wells, and filtered and unfiltered results differ substantially in only a few high-turbidity total chromium samples.

Investigation of Total and Hexavalent Chromium in Filtered and Unfiltered Groundwater Samples at the Tucson International Airport Superfund Site.

PubMed

Tillman, Fred D; McCleskey, R Blaine; Hermosillo, Edyth

2016-10-01

Potential health effects from hexavalent chromium in groundwater have recently become a concern to regulators at the Tucson International Airport Area Superfund site. In 2016, the U.S. Geological Survey sampled 46 wells in the area to characterize the nature and extent of chromium in groundwater, to understand what proportion of total chromium is in the hexavalent state, and to determine if substantial differences are present between filtered and unfiltered chromium concentrations. Results indicate detectable chromium concentrations in all wells, over 75 % of total chromium is in the hexavalent state in a majority of wells, and filtered and unfiltered results differ substantially in only a few high-turbidity total chromium samples.

How underserviced rural communities approach physician recruitment: changes following the opening of a socially accountable medical school in northern Ontario.

PubMed

Mian, Oxana; Hogenbirk, John C; Warry, Wayne; Strasser, Roger P

2017-01-01

The Northern Ontario School of Medicine (NOSM) opened in 2005 with a social accountability mandate to address a long history of physician shortages in northern Ontario. The objective of this qualitative study was to understand the school's effect on recruitment of family physicians into medically underserviced rural communities of northern Ontario. We conducted a multiple case study of 8 small rural communities in northern Ontario that were considered medically underserviced by the provincial ministry of health and had successfully recruited NOSM-trained physicians. We interviewed 10 people responsible for physician recruitment in these communities. Interview transcripts were analyzed by means of an inductive and iterative thematic method. All 8 communities were NOSM medical education sites with populations of 1600-16 000. Positive changes, linked to collaboration with NOSM, included achieving a full complement of physicians in 5 communities with previous chronic shortages of 30%-50% of the physician supply, substantial reduction in recruitment expenditures, decreased reliance on locums and a shift from crisis management to long-term planning in recruitment activities. The magnitude of positive changes varied across communities, with individual leadership and communities' active engagement being key factors in successful physician recruitment. Locating medical education sites in underserviced rural communities in northern Ontario and engaging these communities in training rural physicians showed great potential to improve the ability of small rural communities to recruit family physicians and alleviate physician shortages in the region.

Relevant microclimate for determining the development rate of malaria mosquitoes and possible implications of climate change.

PubMed

Paaijmans, Krijn P; Imbahale, Susan S; Thomas, Matthew B; Takken, Willem

2010-07-09

The relationship between mosquito development and temperature is one of the keys to understanding the current and future dynamics and distribution of vector-borne diseases such as malaria. Many process-based models use mean air temperature to estimate larval development times, and hence adult vector densities and/or malaria risk. Water temperatures in three different-sized water pools, as well as the adjacent air temperature in lowland and highland sites in western Kenya were monitored. Both air and water temperatures were fed into a widely-applied temperature-dependent development model for Anopheles gambiae immatures, and subsequently their impact on predicted vector abundance was assessed. Mean water temperature in typical mosquito breeding sites was 4-6 degrees C higher than the mean temperature of the adjacent air, resulting in larval development rates, and hence population growth rates, that are much higher than predicted based on air temperature. On the other hand, due to the non-linearities in the relationship between temperature and larval development rate, together with a marginal buffering in the increase in water temperature compared with air temperature, the relative increases in larval development rates predicted due to climate change are substantially less. Existing models will tend to underestimate mosquito population growth under current conditions, and may overestimate relative increases in population growth under future climate change. These results highlight the need for better integration of biological and environmental information at the scale relevant to mosquito biology.

Soil fungal and bacterial responses to conversion of open land to short-rotation woody biomass crops

DOE PAGES

Xue, Chao; Penton, Christopher Ryan; Zhang, Bangzhou; ...

2016-01-06

Short-rotation woody biomass crops (SRWCs) have been proposed as an alternative feedstock for biofuel production in the northeastern US that leads to the conversion of current open land to woody plantations, potentially altering the soil microbial community structures and hence functions. We used pyrosequencing of 16S and 28S rRNA genes in soil to assess bacterial and fungal populations when ‘marginal’ grasslands were converted into willow (Salix spp.) and hybrid poplar (Populus spp.) plantations at two sites with similar soils and climate history in northern Michigan (Escanaba; ES) and Wisconsin (Rhinelander; RH). In only three growing seasons, the conversion significantly alteredmore » both the bacterial and fungal communities, which were most influenced by site and then vegetation. The fungal community showed greater change than the bacterial community in response to land conversion at both sites with substantial enrichment of putative pathogenic, ectomycorrhizal, and endophytic fungi associated with poplar and willow. Conversely, the bacterial community structures shifted, but to a lesser degree, with the new communities dissimilar at the two sites and most correlated with soil nutrient status. The bacterial phylum Nitrospirae increased after conversion and was negatively correlated to total soil nitrogen, but positively correlated to soil nitrate, and may be responsible for nitrate accumulation and the increased N 2O emissions previously reported following conversion at these sites. It was determined that the legacy effect of a much longer grassland history and a second dry summer at the ES site may have influenced the grassland (control) microbial community to remain stable while it varied at the RH site.« less

Soil fungal and bacterial responses to conversion of open land to short-rotation woody biomass crops

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xue, Chao; Penton, Christopher Ryan; Zhang, Bangzhou

Short-rotation woody biomass crops (SRWCs) have been proposed as an alternative feedstock for biofuel production in the northeastern US that leads to the conversion of current open land to woody plantations, potentially altering the soil microbial community structures and hence functions. We used pyrosequencing of 16S and 28S rRNA genes in soil to assess bacterial and fungal populations when ‘marginal’ grasslands were converted into willow (Salix spp.) and hybrid poplar (Populus spp.) plantations at two sites with similar soils and climate history in northern Michigan (Escanaba; ES) and Wisconsin (Rhinelander; RH). In only three growing seasons, the conversion significantly alteredmore » both the bacterial and fungal communities, which were most influenced by site and then vegetation. The fungal community showed greater change than the bacterial community in response to land conversion at both sites with substantial enrichment of putative pathogenic, ectomycorrhizal, and endophytic fungi associated with poplar and willow. Conversely, the bacterial community structures shifted, but to a lesser degree, with the new communities dissimilar at the two sites and most correlated with soil nutrient status. The bacterial phylum Nitrospirae increased after conversion and was negatively correlated to total soil nitrogen, but positively correlated to soil nitrate, and may be responsible for nitrate accumulation and the increased N 2O emissions previously reported following conversion at these sites. It was determined that the legacy effect of a much longer grassland history and a second dry summer at the ES site may have influenced the grassland (control) microbial community to remain stable while it varied at the RH site.« less

Plant and soil carbon accumulation following fire in Mediterranean woodlands in Spain.

PubMed

Kaye, Jason Philip; Romanyà, Joan; Vallejo, V Ramón

2010-10-01

We measured plant and soil carbon (C) storage following canopy-replacing wildfires in woodlands of northeastern Spain that include an understory of shrubs dominated by Quercus coccifera and an overstory of Pinus halepensis trees. Established plant succession models predict rapid shrub recovery in these ecosystems, and we build on this model by contrasting shrub succession with long-term C storage in soils, trees, and the whole ecosystem. We used chronosequence and repeated sampling approaches to detect change over time. Aboveground plant C increased from <100 to ~3,000 g C m(-2) over 30 years following fire, which is substantially less than the 5,942 ± 487 g C m(-2) (mean ±1 standard error) in unburned sites. As expected, shrubs accumulated C rapidly, but the capacity for C storage in shrubs was <600 g C m(-2). Pines were the largest plant C pool in sites >20 years post fire, and accounted for all of the difference in plant C between older burned sites and unburned sites. In contrast, soil C was initially higher in burned sites (~4,500 g C m(-2)) than in unburned sites (3,264 ± 261 g C m(-2)) but burned site C declined to unburned levels within 10 years after fire. Combining these results with prior research suggests two states for C storage. When pine regeneration is successful, ~9,200 g C m(-2) accumulate in woodlands but when tree regeneration fails (due to microclimatic stress or short fire return intervals), ecosystem C storage of ~4,000 g C m(-2) will occur in the resulting shrublands.

Effects of Chiloquin Dam on spawning distribution and larval emigration of Lost River, shortnose, and Klamath largescale suckers in the Williamson and Sprague Rivers, Oregon

USGS Publications Warehouse

Martin, Barbara A.; Hewitt, David A.; Ellsworth, Craig M.

2013-01-01

Chiloquin Dam was constructed in 1914 on the Sprague River near the town of Chiloquin, Oregon. The dam was identified as a barrier that potentially inhibited or prevented the upstream spawning migrations and other movements of endangered Lost River (Deltistes luxatusChasmistes brevirostris) suckers, as well as other fish species. In 2002, the Bureau of Reclamation led a working group that examined several alternatives to improve fish passage at Chiloquin Dam. Ultimately it was decided that dam removal was the best alternative and the dam was removed in the summer of 2008. The U.S. Geological Survey conducted a long-term study on the spawning ecology of Lost River, shortnose, and Klamath largescale suckers (Catostomus snyderi) in the Sprague and lower Williamson Rivers from 2004 to 2010. The objective of this study was to evaluate shifts in spawning distribution following the removal of Chiloquin Dam. Radio telemetry was used in conjunction with larval production data and detections of fish tagged with passive integrated transponders (PIT tags) to evaluate whether dam removal resulted in increased utilization of spawning habitat farther upstream in the Sprague River. Increased densities of drifting larvae were observed at a site in the lower Williamson River after the dam was removed, but no substantial changes occurred upstream of the former dam site. Adult spawning migrations primarily were influenced by water temperature and did not change with the removal of the dam. Emigration of larvae consistently occurred about 3-4 weeks after adults migrated into a section of river. Detections of PIT-tagged fish showed increases in the numbers of all three suckers that migrated upstream of the dam site following removal, but the increases for Lost River and shortnose suckers were relatively small compared to the total number of fish that made a spawning migration in a given season. Increases for Klamath largescale suckers were more substantial. Post-dam removal monitoring only included 2 years with below average river discharge during the spawning season; data from years with higher flows may provide a different perspective on the effects of dam removal on the spawning migrations of the two endangered sucker species.

Benefits of Eucalyptus-Albizia mixtures vary by site on Hawaii Island

Treesearch

Dean S. DeBell; Craig D. Whitesell; Thomas B. Crabb

1987-01-01

Eucalyptus saligna Sm. plantations are being tested in Hawaii as a means of providing biomass for conversion to energy. Initial growth rates have been excellent, but supplemental nitrogen (N) is needed for sustained productivity on most sites. Although responses to N fertilizer have been substantial, costs of N applications are costly in dollars and...

Environmental Assessment with Finding of No Significant Impact (EA/FONSI) for New Mobile Aircraft Fire Trainer

DTIC Science & Technology

2010-04-23

communities. The major compositional trend of the vegetation over time is toward an increased density of conifers , especially in the Montane zone...important plant or animal species; interfered substantially with wildlife movement or reproductive behavior; resulted in a substantial infusion of...with wildlife movement or reproductive behavior. The MAFT site is adjacent to know PMJM habitat. Potential impacts to vegetation would not be

Phenological changes of the most commonly sampled ground beetle (Coleoptera: Carabidae) species in the UK environmental change network

NASA Astrophysics Data System (ADS)

Pozsgai, Gabor; Baird, John; Littlewood, Nick A.; Pakeman, Robin J.; Young, Mark R.

2018-03-01

Despite the important roles ground beetles (Coleoptera: Carabidae) play in ecosystems, the highly valued ecosystem services they provide, and ample descriptive documentation of their phenology, the relative impact of various environmental factors on carabid phenology is not well studied. Using the long-term pitfall trap capture data from 12 terrestrial Environmental Change Network (ECN) sites from the UK, we examined how changing climate influenced the phenology of common carabids, and the role particular climate components had on phenological parameters. Of the 28 species included in the analyses, 19 showed earlier start of their activity. This advance was particularly pronounced in the spring, supporting the view that early phenophases have a greater tendency to change and these changes are more directly controlled by temperature than later ones. Autumn activity extended only a few cases, suggesting a photoperiod-driven start of hibernation. No association was found between life-history traits and the ability of species to change their phenology. Air temperatures between April and June were the most important factors determining the start of activity of each species, whilst late season precipitation hastened the cessation of activity. The balance between the advantages and disadvantages of changing phenology on various levels is likely to depend on the species and even on local environmental criteria. The substantially changing phenology of Carabidae may influence their function in ecosystems and the ecosystem services they provide.

Phenological changes of the most commonly sampled ground beetle (Coleoptera: Carabidae) species in the UK environmental change network.

PubMed

Pozsgai, Gabor; Baird, John; Littlewood, Nick A; Pakeman, Robin J; Young, Mark R

2018-06-01

Despite the important roles ground beetles (Coleoptera: Carabidae) play in ecosystems, the highly valued ecosystem services they provide, and ample descriptive documentation of their phenology, the relative impact of various environmental factors on carabid phenology is not well studied. Using the long-term pitfall trap capture data from 12 terrestrial Environmental Change Network (ECN) sites from the UK, we examined how changing climate influenced the phenology of common carabids, and the role particular climate components had on phenological parameters. Of the 28 species included in the analyses, 19 showed earlier start of their activity. This advance was particularly pronounced in the spring, supporting the view that early phenophases have a greater tendency to change and these changes are more directly controlled by temperature than later ones. Autumn activity extended only a few cases, suggesting a photoperiod-driven start of hibernation. No association was found between life-history traits and the ability of species to change their phenology. Air temperatures between April and June were the most important factors determining the start of activity of each species, whilst late season precipitation hastened the cessation of activity. The balance between the advantages and disadvantages of changing phenology on various levels is likely to depend on the species and even on local environmental criteria. The substantially changing phenology of Carabidae may influence their function in ecosystems and the ecosystem services they provide.

Phenological changes of the most commonly sampled ground beetle (Coleoptera: Carabidae) species in the UK environmental change network

NASA Astrophysics Data System (ADS)

Pozsgai, Gabor; Baird, John; Littlewood, Nick A.; Pakeman, Robin J.; Young, Mark R.

2018-06-01

Despite the important roles ground beetles (Coleoptera: Carabidae) play in ecosystems, the highly valued ecosystem services they provide, and ample descriptive documentation of their phenology, the relative impact of various environmental factors on carabid phenology is not well studied. Using the long-term pitfall trap capture data from 12 terrestrial Environmental Change Network (ECN) sites from the UK, we examined how changing climate influenced the phenology of common carabids, and the role particular climate components had on phenological parameters. Of the 28 species included in the analyses, 19 showed earlier start of their activity. This advance was particularly pronounced in the spring, supporting the view that early phenophases have a greater tendency to change and these changes are more directly controlled by temperature than later ones. Autumn activity extended only a few cases, suggesting a photoperiod-driven start of hibernation. No association was found between life-history traits and the ability of species to change their phenology. Air temperatures between April and June were the most important factors determining the start of activity of each species, whilst late season precipitation hastened the cessation of activity. The balance between the advantages and disadvantages of changing phenology on various levels is likely to depend on the species and even on local environmental criteria. The substantially changing phenology of Carabidae may influence their function in ecosystems and the ecosystem services they provide.

Effects of the Relaxation of Upwelling-Favorable Winds on the Diurnal and Semidiurnal Water Temperature Fluctuations in the Santa Barbara Channel, California

NASA Astrophysics Data System (ADS)

Aristizábal, María. F.; Fewings, Melanie R.; Washburn, Libe

2017-10-01

In the Santa Barbara Channel, California, and around the Northern Channel Islands, water temperature fluctuations in the diurnal and semidiurnal frequency bands are intermittent, with amplitudes that vary on time scales of days to weeks. The cause of this intermittency is not well understood. We studied the effects of the barotropic tide, vertical stratification, propagation of coastal-trapped waves, regional wind relaxations, and diurnal-band winds on the intermittency of the temperature fluctuations during 1992-2015. We used temperature data from 43 moorings in 10-200 m water depth and wind data from two buoys and one land station. Subtidal-frequency changes in vertical stratification explain 20-40% of the intermittency in diurnal and semidiurnal temperature fluctuations at time scales of days to weeks. Along the mainland north of Point Conception and at the Northern Channel Islands, the relaxation of upwelling-favorable winds substantially increases vertical stratification, accounting for up to 55% of the subtidal-frequency variability in stratification. As a result of the enhanced stratification, wind relaxations enhance the diurnal and semidiurnal temperature fluctuations at those sites, even though the diurnal-band wind forcing decreases during wind relaxation. A linear model where the background stratification is advected vertically explains a substantial fraction of the temperature fluctuations at most sites. The increase of vertical stratification and subsequent increase in diurnal and semidiurnal temperature fluctuations during wind relaxation is a mechanism that can supply nutrients to the euphotic zone and kelp forests in the Channel in summer when upwelling is weak.

Forest responses to increasing aridity and warmth in the southwestern United States.

PubMed

Williams, A Park; Allen, Craig D; Millar, Constance I; Swetnam, Thomas W; Michaelsen, Joel; Still, Christopher J; Leavitt, Steven W

2010-12-14

In recent decades, intense droughts, insect outbreaks, and wildfires have led to decreasing tree growth and increasing mortality in many temperate forests. We compared annual tree-ring width data from 1,097 populations in the coterminous United States to climate data and evaluated site-specific tree responses to climate variations throughout the 20th century. For each population, we developed a climate-driven growth equation by using climate records to predict annual ring widths. Forests within the southwestern United States appear particularly sensitive to drought and warmth. We input 21st century climate projections to the equations to predict growth responses. Our results suggest that if temperature and aridity rise as they are projected to, southwestern trees will experience substantially reduced growth during this century. As tree growth declines, mortality rates may increase at many sites. Increases in wildfires and bark-beetle outbreaks in the most recent decade are likely related to extreme drought and high temperatures during this period. Using satellite imagery and aerial survey data, we conservatively calculate that ≈ 2.7% of southwestern forest and woodland area experienced substantial mortality due to wildfires from 1984 to 2006, and ≈ 7.6% experienced mortality associated with bark beetles from 1997 to 2008. We estimate that up to ≈ 18% of southwestern forest area (excluding woodlands) experienced mortality due to bark beetles or wildfire during this period. Expected climatic changes will alter future forest productivity, disturbance regimes, and species ranges throughout the Southwest. Emerging knowledge of these impending transitions informs efforts to adaptively manage southwestern forests.

A methodology to link national and local information for spatial targeting of ammonia mitigation efforts

NASA Astrophysics Data System (ADS)

Carnell, E. J.; Misselbrook, T. H.; Dore, A. J.; Sutton, M. A.; Dragosits, U.

2017-09-01

The effects of atmospheric nitrogen (N) deposition are evident in terrestrial ecosystems worldwide, with eutrophication and acidification leading to significant changes in species composition. Substantial reductions in N deposition from nitrogen oxides emissions have been achieved in recent decades. By contrast, ammonia (NH3) emissions from agriculture have not decreased substantially and are typically highly spatially variable, making efficient mitigation challenging. One solution is to target NH3 mitigation measures spatially in source landscapes to maximize the benefits for nature conservation. The paper develops an approach to link national scale data and detailed local data to help identify suitable measures for spatial targeting of local sources near designated Special Areas of Conservation (SACs). The methodology combines high-resolution national data on emissions, deposition and source attribution with local data on agricultural management and site conditions. Application of the methodology for the full set of 240 SACs in England found that agriculture contributes ∼45 % of total N deposition. Activities associated with cattle farming represented 54 % of agricultural NH3 emissions within 2 km of the SACs, making them a major contributor to local N deposition, followed by mineral fertiliser application (21 %). Incorporation of local information on agricultural management practices at seven example SACs provided the means to correct outcomes compared with national-scale emission factors. The outcomes show how national scale datasets can provide information on N deposition threats at landscape to national scales, while local-scale information helps to understand the feasibility of mitigation measures, including the impact of detailed spatial targeting on N deposition rates to designated sites.

Forest responses to increasing aridity and warmth in the southwestern United States

USGS Publications Warehouse

Williams, A.P.; Allen, Craig D.; Millar, C.I.; Swetnam, T.W.; Michaelsen, J.; Still, C.J.; Leavitt, Steven W.

2010-01-01

In recent decades, intense droughts, insect outbreaks, and wildfires have led to decreasing tree growth and increasing mortality in many temperate forests. We compared annual tree-ring width data from 1,097 populations in the coterminous United States to climate data and evaluated site-specific tree responses to climate variations throughout the 20th century. For each population, we developed a climate-driven growth equation by using climate records to predict annual ring widths. Forests within the southwestern United States appear particularly sensitive to drought and warmth. We input 21st century climate projections to the equations to predict growth responses. Our results suggest that if temperature and aridity rise as they are projected to, southwestern trees will experience substantially reduced growth during this century. As tree growth declines, mortality rates may increase at many sites. Increases in wildfires and bark-beetle outbreaks in the most recent decade are likely related to extreme drought and high temperatures during this period. Using satellite imagery and aerial survey data, we conservatively calculate that ≈2.7% of southwestern forest and woodland area experienced substantial mortality due to wildfires from 1984 to 2006, and ≈7.6% experienced mortality associated with bark beetles from 1997 to 2008. We estimate that up to ≈18% of southwestern forest area (excluding woodlands) experienced mortality due to bark beetles or wildfire during this period. Expected climatic changes will alter future forest productivity, disturbance regimes, and species ranges throughout the Southwest. Emerging knowledge of these impending transitions informs efforts to adaptively manage southwestern forests.

A genome-wide methylation study on obesity: differential variability and differential methylation.

PubMed

Xu, Xiaojing; Su, Shaoyong; Barnes, Vernon A; De Miguel, Carmen; Pollock, Jennifer; Ownby, Dennis; Shi, Hidong; Zhu, Haidong; Snieder, Harold; Wang, Xiaoling

2013-05-01

Besides differential methylation, DNA methylation variation has recently been proposed and demonstrated to be a potential contributing factor to cancer risk. Here we aim to examine whether differential variability in methylation is also an important feature of obesity, a typical non-malignant common complex disease. We analyzed genome-wide methylation profiles of over 470,000 CpGs in peripheral blood samples from 48 obese and 48 lean African-American youth aged 14-20 y old. A substantial number of differentially variable CpG sites (DVCs), using statistics based on variances, as well as a substantial number of differentially methylated CpG sites (DMCs), using statistics based on means, were identified. Similar to the findings in cancers, DVCs generally exhibited an outlier structure and were more variable in cases than in controls. By randomly splitting the current sample into a discovery and validation set, we observed that both the DVCs and DMCs identified from the first set could independently predict obesity status in the second set. Furthermore, both the genes harboring DMCs and the genes harboring DVCs showed significant enrichment of genes identified by genome-wide association studies on obesity and related diseases, such as hypertension, dyslipidemia, type 2 diabetes and certain types of cancers, supporting their roles in the etiology and pathogenesis of obesity. We generalized the recent finding on methylation variability in cancer research to obesity and demonstrated that differential variability is also an important feature of obesity-related methylation changes. Future studies on the epigenetics of obesity will benefit from both statistics based on means and statistics based on variances.

Changes in Bird Functional Diversity across Multiple Land Uses: Interpretations of Functional Redundancy Depend on Functional Group Identity

PubMed Central

Luck, Gary W.; Carter, Andrew; Smallbone, Lisa

2013-01-01

Examinations of the impact of land-use change on functional diversity link changes in ecological community structure driven by land modification with the consequences for ecosystem function. Yet, most studies have been small-scale, experimental analyses and primarily focussed on plants. There is a lack of research on fauna communities and at large-scales across multiple land uses. We assessed changes in the functional diversity of bird communities across 24 land uses aligned along an intensification gradient. We tested the hypothesis that functional diversity is higher in less intensively used landscapes, documented changes in diversity using four diversity metrics, and examined how functional diversity varied with species richness to identify levels of functional redundancy. Functional diversity, measured using a dendogram-based metric, increased from high to low intensity land uses, but observed values did not differ significantly from randomly-generated expected values. Values for functional evenness and functional divergence did not vary consistently with land-use intensification, although higher than expected values were mostly recorded in high intensity land uses. A total of 16 land uses had lower than expected values for functional dispersion and these were mostly low intensity native vegetation sites. Relations between functional diversity and bird species richness yielded strikingly different patterns for the entire bird community vs. particular functional groups. For all birds and insectivores, functional evenness, divergence and dispersion showed a linear decline with increasing species richness suggesting substantial functional redundancy across communities. However, for nectarivores, frugivores and carnivores, there was a significant hump-shaped or non-significant positive linear relationship between these functional measures and species richness indicating less redundancy. Hump-shaped relationships signify that the most functionally diverse communities occur at intermediate levels of species richness. Interpretations of redundancy thus vary for different functional groups and related ecosystem functions (e.g. pollination), and can be substantially different to relationships involving entire ecological communities. PMID:23696844

Arsenic Remediation Enhancement Through Chemical Additions to Pump and Treat Operations

NASA Astrophysics Data System (ADS)

Wovkulich, K.; Mailloux, B. J.; Stute, M.; Simpson, H. J.; Keimowitz, A. R.; Powell, A.; Lacko, A.; Chillrud, S. N.

2008-12-01

Arsenic is a contaminant found at more than 500 US Superfund sites. Since pump and treat technologies are widely used for remediation of contaminated groundwater, increasing the efficiency of contaminant removal at such sites should allow limited financial resources to clean up more sites. The Vineland Chemical Company Superfund site is extensively contaminated with arsenic after waste arsenic salts were stored and disposed of improperly for much of the company's 44 year manufacturing lifetime. Despite approximately eight years of pump and treat remediation, arsenic concentrations in the recovery wells can still be greater than 1000 ppb. The arsenic concentrations in the groundwater remain high because of slow desorption of arsenic from contaminated aquifer solids. Extrapolation of laboratory column experiments suggest that continuing the current groundwater remediation practice based on flushing ambient groundwater through the system may require on the order of hundreds of years to clean the site. However, chemical additions of phosphate or oxalic acid into the aquifer could decrease the remediation time scale substantially. Laboratory results from a soil column experiment using input of 10 mM oxalic acid suggest that site clean up of groundwater could be decreased to as little as four years. Pilot scale forced gradient field experiments will help establish whether chemical additions can be effective for increasing arsenic mobilization from aquifer solids and thus substantially decrease pump and treat clean up time.

[Scientific substantiation of sizes of sanitary protection zones of anthrax burial sites based on the comprehensive evaluation of risk factors].

PubMed

Kartavaya, S A; Simonova, E G; Loktionova, M N; Kolganova, O A; Ladny, V I; Raichich, S R

In the Russian Federation anthrax epizootics are still being registered among animals as well as epidemic foci of the population. This situation is linked to natural reservoirs of the pathogen - numerous anthrax burial sites which belong to class I of dangerous objects. In this connection, a one-kilometer sanitary protective zone is required according to current Russian Federation legislation. As a result, a significant land of the country is unsuitable for any agricultural use. Meanwhile, epizootologo-epidemiological observations indicate to that different anthrax burial sites differ in their characteristics and represent varying degrees of the risk. In connection with the development of the agricultural sector, intensive construction and the development of new and abandoned areas there is a need of creating unified approaches to assess the risk of anthrax burial sites, as well as to determine the size of sanitary protection zones based on the risk assessment. This article represents an original methodology to assess the actual danger of anthrax burial sites. It is based on a comprehensive multi-factor quantity-related risk assessment, described by a model that accounting the importance of each study for natural, social and biological factors. Undertaking this methodology allowed to reveal a degree of danger of anthrax burial sites located in different territories of the Russian Federation, and helped to substantiate the dimensions of their sanitary protection zones.

Repair of radiation-induced heat-labile sites is independent of DNA-PKcs, XRCC1 or PARP

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stenerlöw, Bo; Karlsson, Karin H.; Radulescu, Irina

2008-04-29

Ionizing radiation induces a variety of different DNA lesions: in addition to the most critical DNA damage, the DSB, numerous base alterations, SSBs and other modifications of the DNA double-helix are formed. When several non-DSB lesions are clustered within a short distance along DNA, or close to a DSB, they may interfere with the repair of DSBs and affect the measurement of DSB induction and repair. We have previously shown that a substantial fraction of DSBs measured by pulsed-field gel electrophoresis (PFGE) are in fact due to heat-labile sites (HLS) within clustered lesions, thus reflecting an artifact of preparation ofmore » genomic DNA at elevated temperature. To further characterize the influence of HLS on DSB induction and repair, four human cell lines (GM5758, GM7166, M059K, U-1810) with apparently normal DSB rejoining were tested for bi-phasic rejoining after gamma irradiation. When heat-released DSBs were excluded from the measurements the fraction of fast rejoining decreased to less than 50% of the total. However, neither the half-times of the fast (t{sub 1/2} = 7-8 min) or slow (t{sub 1/2} = 2.5 h) DSB rejoining were changed significantly. At t=0 the heat-released DSBs accounted for almost 40% of the DSBs, corresponding to 10 extra DSB/cell/Gy in the initial DSB yield. These heat-released DSBs were repaired within 60-90 min in all tested cells, including M059K cells treated with wortmannin or DNA-PKcs defect M059J cells. Furthermore, cells lacking XRCC1 or Poly(ADP-ribose) polymerase-1 (PARP-1) rejoined both total DSBs and heat-released DSBs similar to normal cells. In summary, the presence of heat-labile sites have a substantial impact on DSB induction yields and DSB rejoining rates measured by pulsed-field gel electrophoresis, and HLS repair is independent of DNA-PKcs, XRCC1 and PARP.« less

Time allocation by Greater White-fronted Geese: Influence of diet, energy reserves and predation

USGS Publications Warehouse

Ely, Craig R.

1992-01-01

I determined the amount of time Greater White-fronted Geese (Anser albifrons frontalis) allocated to various activities from September to May, 1980-1982 at their primary wintering areas in the Pacific Flyway of North America. The length of time spent on roosts during the day was positively correlated to day length. Geese at roost sites spent the majority of their time sleeping (24-46%), alert (17-40%), walking or swimming (6-24%), and in comfort behaviors (3-25%). The amount of time geese fed each day varied little from early autumn to late spring (4.5-4.9 hr), except during mid-winter when minimum temperatures were below freezing (3.9 hr), and immediately before migration in spring (6.3 hr). The proportion of time devoted to feeding and alert behavior, the two most dominant activities at field sites, varied significantly among seasons and locations. The amount of time geese were actively engaged in foraging each season was more dependent on feeding intensity than the amount of time spent at foraging sites (fields), and varied almost three-fold, from 1.8 hr during late winter to 5.1 hr during late spring. Geese fed in closer proximity to conspecifics, were more frequently disturbed, and spent less time feeding during the hunting season. Exploitation of high energy foods and catabolism of substantial energy reserves probably enabled geese to minimize foraging time during periods of harsh weather and high predation pressure. Seasonal variation in the proportion of time spent feeding corresponded closely to changes in body mass. Greater White-fronted Geese wintering in the Pacific Flyway spent substantially less time feeding than they do in Europe, as geese in California fed primarily on high energy cereal grains, while in Europe they subsist on green vegetation which has relatively less digestible energy than cereal grains.

Effects of advanced treatment of municipal wastewater on the White River near Indianapolis, Indiana; trends in water quality, 1978-86

USGS Publications Warehouse

Crawford, Charles G.; Wangsness, David J.

1993-01-01

The City of Indianapolis has constructed state-of-the-art advanced municipal wastewater-treatment systems to enlarge and upgrade the existing secondary-treatment processes at its Belmont and Southport treatment plants. These new advanced-wastewater-treatment plants became operational in 1983. A nonparametric statistical procedure--a modified form of the Wilcoxon-Mann-Whitney rank-sum test--was used to test for trends in time-series water-quality data from four sites on the White River and from the Belmont and Southport wastewater-treatment plants. Time-series data representative of pre-advanced- (1978-1980) and post-advanced- (1983--86) wastewater-treatment conditions were tested for trends, and the results indicate substantial changes in water quality of treated effluent and of the White River downstream from Indianapolis after implementation of advanced wastewater treatment. Water quality from 1981 through 1982 was highly variable due to plant construction. Therefore, this time period was excluded from the analysis. Water quality at sample sites located upstream from the wastewater-treatment plants was relatively constant during the period of study (1978-86). Analysis of data from the two plants and downstream from the plants indicates statistically significant decreasing trends in effluent concentrations of total ammonia, 5-day biochemical-oxygen demand, fecal-coliform bacteria, total phosphate, and total solids at all sites where sufficient data were available for testing. Because of in-plant nitrification, increases in nitrate concentration were statistically significant in the two plants and in the White River. The decrease in ammonia concentrations and 5-day biochemical-oxygen demand in the White River resulted in a statistically significant increasing trend in dissolved-oxygen concentration in the river because of reduced oxygen demand for nitrification and biochemical oxidation processes. Following implementation of advanced wastewater treatment, the number of river-quality samples that failed to meet the water-quality standards for ammonia and dissolved oxygen that apply to the White River decreased substantially.

The land value impacts of wetland restoration.

PubMed

Kaza, Nikhil; BenDor, Todd K

2013-09-30

U.S. regulations require offsets for aquatic ecosystems damaged during land development, often through restoration of alternative resources. What effect does large-scale wetland and stream restoration have on surrounding land values? Restoration effects on real estate values have substantial implications for protecting resources, increasing tax base, and improving environmental policies. Our analysis focuses on the three-county Raleigh-Durham-Chapel Hill, North Carolina region, which has experienced rapid development and extensive aquatic ecological restoration (through the state's Ecosystem Enhancement Program [EEP]). Since restoration sites are not randomly distributed across space, we used a genetic algorithm to match parcels near restoration sites with comparable control parcels. Similar to propensity score analysis, this technique facilitates statistical comparison and isolates the effects of restoration sites on surrounding real estate values. Compared to parcels not proximate to any aquatic resources, we find that, 1) natural aquatic systems steadily and significantly increase parcel values up to 0.75 mi away, and 2) parcels <0.5 mi from EEP restoration sites have significantly lower sale prices, while 3) parcels >0.5 mi from EEP sites gain substantial amenity value. When we control for intervening water bodies (e.g. un-restored streams and wetlands), we find a similar inflection point whereby parcels <0.5 mi from EEP sites exhibit lower values, and sites 0.5-0.75 mi away exhibit increased values. Our work points to the need for higher public visibility of aquatic ecosystem restoration programs and increased public information about their value. Copyright © 2013 Elsevier Ltd. All rights reserved.

Reduction of garbage in the diet of nonbreeding glaucous gulls corresponding to a change in waste management

USGS Publications Warehouse

Weiser, Emily L.; Powell, Abby N.

2011-01-01

Glaucous gulls (Larus hyperboreus) are major predators in the Arctic and may benefit from human development. We studied use of garbage by glaucous gulls in Barrow, Alaska, in 2007, when municipal waste was disposed of in a landfill, and in 2008, when it was incinerated. In both years, diet samples from breeding adult gulls contained less garbage than those from loafing nonbreeding gulls (mostly subadults of less than four years), possibly because the breeding colony was more distant than many loafing sites from the landfills. Although breeding gull samples showed no change, garbage in regurgitated pellets and food remains of nonbreeding gulls was significantly less prevalent in 2008 than in 2007 (28% vs. 43% occurrence in diet samples), and this reduction could be explained by the switch from landfill to waste incineration. Yet garbage remained a substantial part of nonbreeding gull diet after the management change. Other aspects of waste management, such as storage prior to disposal, may also be important in limiting scavengers’ access to garbage and thus reducing the indirect impact of human development on prey species of conservation concern.

A Potential Role for CHH DNA Methylation in Cotton Fiber Growth Patterns

PubMed Central

Jin, Xiang; Pang, Yu; Jia, Fangxing; Xiao, Guanghui; Li, Qin; Zhu, Yuxian

2013-01-01

DNA methylation controls many aspects of plant growth and development. Here, we report a novel annual growth potential change that may correlate with changes in levels of the major DNA demethylases and methyltransferases in cotton ovules harvested at different times of the year. The abundances of DNA demethylases, at both the mRNA and protein levels, increased significantly from February to August and decreased during the remainder of the 12-month period, with the opposite pattern observed for DNA methyltransferases. Over the course of one year, substantial changes in methylcytosine content was observed at certain CHH sites (H = A, C, or T) in the promoter regions of the ETHYLENE RESPONSIVE FACTOR 6 (ERF6), SUPPRESSION OF RVS 161 DELTA 4 (SUR4) and 3-KETOACYL-COA SYNTHASE 13 (KCS13), which regulate cotton fiber growth. Three independent techniques were used to confirm the annual fluctuations in DNA methylation. Furthermore, in homozygous RNAi lines specifically targeting REPRESSOR OF SILENCING 1 (ROS1, a conserved DNA demethylase domain), promotion of DNA methylation significantly reduced fiber growth during August. PMID:23593241

In silico Analysis of Conformational Changes Induced by Mutation of Aromatic Binding Residues: Consequences for Drug Binding in the hERG K+ Channel

PubMed Central

Knape, Kirsten; Linder, Tobias; Wolschann, Peter; Beyer, Anton; Stary-Weinzinger, Anna

2011-01-01

Pharmacological inhibition of cardiac hERG K+ channels is associated with increased risk of lethal arrhythmias. Many drugs reduce hERG current by directly binding to the channel, thereby blocking ion conduction. Mutation of two aromatic residues (F656 and Y652) substantially decreases the potency of numerous structurally diverse compounds. Nevertheless, some drugs are only weakly affected by mutation Y652A. In this study we utilize molecular dynamics simulations and docking studies to analyze the different effects of mutation Y652A on a selected number of hERG blockers. MD simulations reveal conformational changes in the binding site induced by mutation Y652A. Loss of π-π-stacking between the two aromatic residues induces a conformational change of the F656 side chain from a cavity facing to cavity lining orientation. Docking studies and MD simulations qualitatively reproduce the diverse experimentally observed modulatory effects of mutation Y652A and provide a new structural interpretation for the sensitivity differences. PMID:22194911

Radiometric calibration of the Landsat MSS sensor series

USGS Publications Warehouse

Helder, Dennis L.; Karki, Sadhana; Bhatt, Rajendra; Micijevik, Esad; Aaron, David; Jasinski, Benjamin

2012-01-01

Multispectral remote sensing of the Earth using Landsat sensors was ushered on July 23, 1972, with the launch of Landsat-1. Following that success, four more Landsat satellites were launched, and each of these carried the Multispectral Scanner System (MSS). These five sensors provided the only consistent multispectral space-based imagery of the Earth's surface from 1972 to 1982. This work focuses on developing both a consistent and absolute radiometric calibration of this sensor system. Cross-calibration of the MSS was performed through the use of pseudoinvariant calibration sites (PICSs). Since these sites have been shown to be stable for long periods of time, changes in MSS observations of these sites were attributed to changes in the sensors themselves. In addition, simultaneous data collections were available for some MSS sensor pairs, and these were also used for cross-calibration. Results indicated substantial differences existed between instruments, up to 16%, and these were reduced to 5% or less across all MSS sensors and bands. Lastly, this paper takes the calibration through the final step and places the MSS sensors on an absolute radiometric scale. The methodology used to achieve this was based on simultaneous data collections by the Landsat-5 MSS and Thematic Mapper (TM) instruments. Through analysis of image data from a PICS location and through compensating for the spectral differences between the two instruments, the Landsat-5 MSS sensor was placed on an absolute radiometric scale based on the Landsat-5 TM sensor. Uncertainties associated with this calibration are considered to be less than 5%.

Stoichiometric relationship between suspension-feeding caddisfly (Trichoptera: Brachycentridae) and seston

USGS Publications Warehouse

Veldboom, J.A.; Haro, R.J.

2011-01-01

Organisms must acquire adequate amounts of carbon (C) and nutrients [i. e., nitrogen (N) and phosphorus (P)] from their food to support growth. The growth of organisms can be constrained by consumer-resource elemental imbalances in C:nutrient ratios, especially in aquatic ecosystems. Furthermore, the elemental composition of aquatic organisms can change through ontogeny, which can impose additional challenges to growth (the growth rate hypothesis), terminal body size, and reproductive output. In streams, growth in larval aquatic insects is influenced primarily by food quality and quantity, temperature, and population density. We conducted a field study that tracked the growth of a common suspension-feeding caddisfly (Brachycentrus occidentalis) through its ontogeny by comparing the elemental composition (C:N:P) of the organism with its available food supply (suspended particulate organic matter or seston). Larvae and seston were sampled from four streams throughout 1 year. Differences in the growth of larvae among the streams were evident, even though the streams possessed similar thermal regimes. Spatial and temporal differences in the nutrient contents of B. occidentalis and seston were observed, suggesting a consumer-resource elemental imbalance. Lower C:P and N:P ratios in food were positively correlated to larval growth rate, suggesting growth was limited by P. The C, N, and P contents in B. occidentalis' body tissue did change throughout ontogeny. C:nutrient ratios varied across sites during larval development; however, inter-site variation decreased substantially as the populations approached pupation. Ultimately, consumer-resource elemental imbalances during the larval stage did not lead to differences in pre-emergent standing stocks across sites. ?? 2011 Springer Science+Business Media B.V.

Structural and Kinetic Basis for Substrate Selectivity in Populus tremuloides Sinapyl Alcohol Dehydrogenase

PubMed Central

Bomati, Erin K.; Noel, Joseph P.

2005-01-01

We describe the three-dimensional structure of sinapyl alcohol dehydrogenase (SAD) from Populus tremuloides (aspen), a member of the NADP(H)-dependent dehydrogenase family that catalyzes the last reductive step in the formation of monolignols. The active site topology revealed by the crystal structure substantiates kinetic results indicating that SAD maintains highest specificity for the substrate sinapaldehyde. We also report substantial substrate inhibition kinetics for the SAD-catalyzed reduction of hydroxycinnamaldehydes. Although SAD and classical cinnamyl alcohol dehydrogenases (CADs) catalyze the same reaction and share some sequence identity, the active site topology of SAD is strikingly different from that predicted for classical CADs. Kinetic analyses of wild-type SAD and several active site mutants demonstrate the complexity of defining determinants of substrate specificity in these enzymes. These results, along with a phylogenetic analysis, support the inclusion of SAD in a plant alcohol dehydrogenase subfamily that includes cinnamaldehyde and benzaldehyde dehydrogenases. We used the SAD three-dimensional structure to model several of these SAD-like enzymes, and although their active site topologies largely mirror that of SAD, we describe a correlation between substrate specificity and amino acid substitution patterns in their active sites. The SAD structure thus provides a framework for understanding substrate specificity in this family of enzymes and for engineering new enzyme specificities. PMID:15829607

Structural and kinetic basis for substrate selectivity in Populus tremuloides sinapyl alcohol dehydrogenase.

PubMed

Bomati, Erin K; Noel, Joseph P

2005-05-01

We describe the three-dimensional structure of sinapyl alcohol dehydrogenase (SAD) from Populus tremuloides (aspen), a member of the NADP(H)-dependent dehydrogenase family that catalyzes the last reductive step in the formation of monolignols. The active site topology revealed by the crystal structure substantiates kinetic results indicating that SAD maintains highest specificity for the substrate sinapaldehyde. We also report substantial substrate inhibition kinetics for the SAD-catalyzed reduction of hydroxycinnamaldehydes. Although SAD and classical cinnamyl alcohol dehydrogenases (CADs) catalyze the same reaction and share some sequence identity, the active site topology of SAD is strikingly different from that predicted for classical CADs. Kinetic analyses of wild-type SAD and several active site mutants demonstrate the complexity of defining determinants of substrate specificity in these enzymes. These results, along with a phylogenetic analysis, support the inclusion of SAD in a plant alcohol dehydrogenase subfamily that includes cinnamaldehyde and benzaldehyde dehydrogenases. We used the SAD three-dimensional structure to model several of these SAD-like enzymes, and although their active site topologies largely mirror that of SAD, we describe a correlation between substrate specificity and amino acid substitution patterns in their active sites. The SAD structure thus provides a framework for understanding substrate specificity in this family of enzymes and for engineering new enzyme specificities.

A catchment-scale palaeolimnological investigation into multiple forcings of algal community change

NASA Astrophysics Data System (ADS)

Moorhouse, H. L.; McGowan, S.; Jones, M.; Brayshaw, S.; Barker, P.; Leavitt, P.

2013-12-01

A catchment-scale palaeolimnological investigation of sedimentary algal pigments spanning the past ~200 years was undertaken on lakes which drain into Windermere, England's largest and longest lake. We aimed to determine the relative influence of past regional (climatic, atmospheric deposition) and local (land-use, hydrological modification, point-source pollution) drivers of algal community change by comparing three fertile lowland lakes (Blelham Tarn, Esthwaite Water and Rydal Water) and two upland tarns (Stickle and Easedale Tarns) to better inform a catchment-wide management strategy for Windermere. Drivers of change at the upland sites included atmospheric acid deposition, climatic change and structural modifications caused by dam installation, whereas the influence of agriculture and point-source pollution is greater in the lakes in the lowland parts of the catchment. As a result, contrasting algal responses were noted in the lakes. For example, the cyanobacterial pigment zeaxanthin and the cryptophte pigment alloxanthin increased at Stickle Tarn (359% and 321% respectively) corresponding with the establishment of a dam at the outflow of the tarn in 1838. However, post-1900's the concentration of these pigments declined both at Stickle and at Easedale Tarn coincident with increased storm events and in the later decades of the century (~1980s onwards) decreases in acid deposition. In the lowland sites the cyanobacterial pigment aphanizophyll increased by 400-7000% and the indicator of total algal production β-carotene increased as much as six-fold indicating a substantial degradation in water quality and the onset of cyanobacterial blooms since the 1950's. In the lowland sites, degradation of water quality was closely linked to sewage installations and treatment work upgrades during the 1950's-70's and intensification of agricultural practices most notably increases in sheep stocking densities, which expanded in the 1950's. In lowland lakes with a higher catchment: lake area ratio, climate (specifically precipitation) had a more demonstrable impact on algal communities, through enhanced delivery of catchment nutrients. Therefore, we have identified water-bodies likely to be most 'at-risk' from future climate change, in order to advise on tailored management strategies for individual lakes within the catchment.

Orbitally-resolved SST Changes during the EOT: Results from IODP 342 Expedition

NASA Astrophysics Data System (ADS)

Liu, Z.; He, Y.; Wilson, P. A.; Pagani, M.

2014-12-01

Sea surface temperature (SST) changes during the Eocene-Oligocene climate transition were characterized by substantial cooling at high latitudes and less cooling in low latitudes, with little information from mid-latitudes so far. Taking advantage of the newly retrieved drift sediments from the IODP 342 Expedition, we aim to reconstruct SST changes at the mid-latitude Newfoundland region, at an unprecedented orbital resolution from Site U1411. During the period investigated, 32-36 Ma, the alkenone UK'37 values range from 0.65 to 0.95, with values all greater than 0.80 before the transition and lower values (<0.80) occurring approximately at the eccentricity minimum nodes after the transition. No immediate cooling associated with Oi-1 glaciation was observed. During the Oligocene, SSTs during warm epochs (corresponding to eccentricity maxima) were not significantly cooler than before. Overall, SST fluctuations appear to be modulated by orbital changes throughout the record, although more apparent due to larger amplitude of SST variability after the transition. We thus hypothesize that the mid-latitude Newfoundland region was largely bathed by low-latitude warm waters during the transition and that polar waters (fronts) reached to the region occasionally at periods of eccentricity minimum nodes during the Oligocene.

Bioturbation enhances the aerobic respiration of lake sediments in warming lakes.

PubMed

Baranov, Viktor; Lewandowski, Jörg; Krause, Stefan

2016-08-01

While lakes occupy less than 2% of the total surface of the Earth, they play a substantial role in global biogeochemical cycles. For instance, shallow lakes are important sites of carbon metabolism. Aerobic respiration is one of the important drivers of the carbon metabolism in lakes. In this context, bioturbation impacts of benthic animals (biological reworking of sediment matrix and ventilation of the sediment) on sediment aerobic respiration have previously been underestimated. Biological activity is likely to change over the course of a year due to seasonal changes of water temperatures. This study uses microcosm experiments to investigate how the impact of bioturbation (by Diptera, Chironomidae larvae) on lake sediment respiration changes when temperatures increase. While at 5°C, respiration in sediments with and without chironomids did not differ, at 30°C sediment respiration in microcosms with 2000 chironomids per m(2) was 4.9 times higher than in uninhabited sediments. Our results indicate that lake water temperature increases could significantly enhance lake sediment respiration, which allows us to better understand seasonal changes in lake respiration and carbon metabolism as well as the potential impacts of global warming. © 2016 The Authors.

Bioturbation enhances the aerobic respiration of lake sediments in warming lakes

PubMed Central

Krause, Stefan

2016-01-01

While lakes occupy less than 2% of the total surface of the Earth, they play a substantial role in global biogeochemical cycles. For instance, shallow lakes are important sites of carbon metabolism. Aerobic respiration is one of the important drivers of the carbon metabolism in lakes. In this context, bioturbation impacts of benthic animals (biological reworking of sediment matrix and ventilation of the sediment) on sediment aerobic respiration have previously been underestimated. Biological activity is likely to change over the course of a year due to seasonal changes of water temperatures. This study uses microcosm experiments to investigate how the impact of bioturbation (by Diptera, Chironomidae larvae) on lake sediment respiration changes when temperatures increase. While at 5°C, respiration in sediments with and without chironomids did not differ, at 30°C sediment respiration in microcosms with 2000 chironomids per m2 was 4.9 times higher than in uninhabited sediments. Our results indicate that lake water temperature increases could significantly enhance lake sediment respiration, which allows us to better understand seasonal changes in lake respiration and carbon metabolism as well as the potential impacts of global warming. PMID:27484649

A natural language screening measure for motivation to change.

PubMed

Miller, William R; Johnson, Wendy R

2008-09-01

Client motivation for change, a topic of high interest to addiction clinicians, is multidimensional and complex, and many different approaches to measurement have been tried. The current effort drew on psycholinguistic research on natural language that is used by clients to describe their own motivation. Seven addiction treatment sites participated in the development of a simple scale to measure client motivation. Twelve items were drafted to represent six potential dimensions of motivation for change that occur in natural discourse. The maximum self-rating of motivation (10 on a 0-10 scale) was the median score on all items, and 43% of respondents rated 10 on all 12 items - a substantial ceiling effect. From 1035 responses, three factors emerged representing importance, ability, and commitment - constructs that are also reflected in several theoretical models of motivation. A 3-item version of the scale, with one marker item for each of these constructs, accounted for 81% of variance in the full scale. The three items are: 1. It is important for me to . . . 2. I could . . . and 3. I am trying to . . . This offers a quick (1-minute) assessment of clients' self-reported motivation for change.

Fire frequency drives decadal changes in soil carbon and nitrogen and ecosystem productivity

NASA Astrophysics Data System (ADS)

Pellegrini, Adam F. A.; Ahlström, Anders; Hobbie, Sarah E.; Reich, Peter B.; Nieradzik, Lars P.; Staver, A. Carla; Scharenbroch, Bryant C.; Jumpponen, Ari; Anderegg, William R. L.; Randerson, James T.; Jackson, Robert B.

2018-01-01

Fire frequency is changing globally and is projected to affect the global carbon cycle and climate. However, uncertainty about how ecosystems respond to decadal changes in fire frequency makes it difficult to predict the effects of altered fire regimes on the carbon cycle; for instance, we do not fully understand the long-term effects of fire on soil carbon and nutrient storage, or whether fire-driven nutrient losses limit plant productivity. Here we analyse data from 48 sites in savanna grasslands, broadleaf forests and needleleaf forests spanning up to 65 years, during which time the frequency of fires was altered at each site. We find that frequently burned plots experienced a decline in surface soil carbon and nitrogen that was non-saturating through time, having 36 per cent (±13 per cent) less carbon and 38 per cent (±16 per cent) less nitrogen after 64 years than plots that were protected from fire. Fire-driven carbon and nitrogen losses were substantial in savanna grasslands and broadleaf forests, but not in temperate and boreal needleleaf forests. We also observe comparable soil carbon and nitrogen losses in an independent field dataset and in dynamic model simulations of global vegetation. The model study predicts that the long-term losses of soil nitrogen that result from more frequent burning may in turn decrease the carbon that is sequestered by net primary productivity by about 20 per cent of the total carbon that is emitted from burning biomass over the same period. Furthermore, we estimate that the effects of changes in fire frequency on ecosystem carbon storage may be 30 per cent too low if they do not include multidecadal changes in soil carbon, especially in drier savanna grasslands. Future changes in fire frequency may shift ecosystem carbon storage by changing soil carbon pools and nitrogen limitations on plant growth, altering the carbon sink capacity of frequently burning savanna grasslands and broadleaf forests.

Fire frequency drives decadal changes in soil carbon and nitrogen and ecosystem productivity.

PubMed

Pellegrini, Adam F A; Ahlström, Anders; Hobbie, Sarah E; Reich, Peter B; Nieradzik, Lars P; Staver, A Carla; Scharenbroch, Bryant C; Jumpponen, Ari; Anderegg, William R L; Randerson, James T; Jackson, Robert B

2018-01-11

Fire frequency is changing globally and is projected to affect the global carbon cycle and climate. However, uncertainty about how ecosystems respond to decadal changes in fire frequency makes it difficult to predict the effects of altered fire regimes on the carbon cycle; for instance, we do not fully understand the long-term effects of fire on soil carbon and nutrient storage, or whether fire-driven nutrient losses limit plant productivity. Here we analyse data from 48 sites in savanna grasslands, broadleaf forests and needleleaf forests spanning up to 65 years, during which time the frequency of fires was altered at each site. We find that frequently burned plots experienced a decline in surface soil carbon and nitrogen that was non-saturating through time, having 36 per cent (±13 per cent) less carbon and 38 per cent (±16 per cent) less nitrogen after 64 years than plots that were protected from fire. Fire-driven carbon and nitrogen losses were substantial in savanna grasslands and broadleaf forests, but not in temperate and boreal needleleaf forests. We also observe comparable soil carbon and nitrogen losses in an independent field dataset and in dynamic model simulations of global vegetation. The model study predicts that the long-term losses of soil nitrogen that result from more frequent burning may in turn decrease the carbon that is sequestered by net primary productivity by about 20 per cent of the total carbon that is emitted from burning biomass over the same period. Furthermore, we estimate that the effects of changes in fire frequency on ecosystem carbon storage may be 30 per cent too low if they do not include multidecadal changes in soil carbon, especially in drier savanna grasslands. Future changes in fire frequency may shift ecosystem carbon storage by changing soil carbon pools and nitrogen limitations on plant growth, altering the carbon sink capacity of frequently burning savanna grasslands and broadleaf forests.

Leaving Group Ability Observably Affects Transition State Structure in a Single Enzyme Active Site.

PubMed

Roston, Daniel; Demapan, Darren; Cui, Qiang

2016-06-15

A reaction's transition state (TS) structure plays a critical role in determining reactivity and has important implications for the design of catalysts, drugs, and other applications. Here, we explore TS structure in the enzyme alkaline phosphatase using hybrid Quantum Mechanics/Molecular Mechanics simulations. We find that minor perturbations to the substrate have major effects on TS structure and the way the enzyme stabilizes the TS. Substrates with good leaving groups (LGs) have little cleavage of the phosphorus-LG bond at the TS, while substrates with poor LGs have substantial cleavage of that bond. The results predict nonlinear free energy relationships for a single rate-determining step, and substantial differences in kinetic isotope effects for different substrates; both trends were observed in previous experimental studies, although the original interpretations differed from the present model. Moreover, due to different degrees of phosphorus-LG bond cleavage at the TS for different substrates, the LG is stabilized by different interactions at the TS: while a poor LG is directly stabilized by an active site zinc ion, a good LG is mainly stabilized by active site water molecules. Our results demonstrate the considerable plasticity of TS structure and stabilization in enzymes. Furthermore, perturbations to reactivity that probe TS structure experimentally (i.e., substituent effects) may substantially perturb the TS they aim to probe, and thus classical experimental approaches such as free energy relations should be interpreted with care.

Development of photopolymerizable clay nanocomposites utilizing reactive dispersants

NASA Astrophysics Data System (ADS)

Owusu-Adom, Kwame

Nanocomposites hold tremendous promise for expanding the utility of polymeric materials. However, accessing particulate sizes in the nanoscale domain continues to be a scientific challenge, especially in highly cross-linked photopolymerizable systems. In this study, photopolymerizable nanocomposites utilizing clay nanoparticles and reactive dispersants have been developed. The influence of particle size, dispersant-clay interactions, and surfactant concentration on photopolymerization behavior and nanoparticle dispersion has been elucidated. Clay particles serve as templates upon which surfactants aggregate during photopolymerization. This results in higher photopolymerization rates with addition of increasing concentrations of polymerizable surfactants. Furthermore, polymerizable surfactants induce faster photopolymerization rates compared to non-polymerizable analogues in systems that have ionically-bound dispersants on the particle surface. Utilizing reactive organoclays induces significant changes to the photopolymerization behavior depending on the choice of reactive functionality employed. Faster acrylate photopolymerization rates occur in photopolymer systems containing thiol-modified clays, while much slower rates occur for nonpolymerizable organoclay systems. In addition, chemical compatibility between monomer and clay dispersant (based on chemical similarity or polarity) allows enhancement of exfoliation in photopolymerizable formulations. With polymerizable dispersants, exfoliation is readily achieved in various multifunctional acrylate systems. The degree of exfoliation depends on the position of the reactive group relative to the surfactant's cationic site and the type of functionality. Thiolated organoclays exfoliate during polymerization, while methacrylated clays show substantially less dependence on polymerization behavior. Interestingly, changes in the physical properties of the resulting nanocomposite are independent of the degree of exfoliation in polymerizable organoclay systems. The polymer cross-link density dictates the magnitude of change in both modulus and glass transition temperature of the nanocomposite. Substantial increases in modulus and Tg occur in elastomeric and low cross-link density polymers, while decreases occur in the modulus and Tg of highly cross-linked polymer networks. Finally, these parameters have formed a basis for developing nanocomposites with higher moduli and lower volumetric shrinkage. The photopolymerization rates of these systems are controllable and increase substantially with addition of polymerizable organoclays. Such properties occur in traditional multifunctional acrylate photopolymer systems as well as new binary thiol-(meth)acrylate and ternary thiol-ene-(meth)acrylate photopolymers.

Persistent tumor-induced osteomalacia confirmed by elevated postoperative levels of serum fibroblast growth factor-23 and 5-year follow-up of bone density changes.

PubMed

Zimering, Mark B; Caldarella, Felice A; White, Kenneth E; Econs, Michael J

2005-01-01

To describe a case of persistent tumor-induced osteomalacia, determine whether serum fibroblast growth factor-23 (FGF-23) levels postoperatively indicate incomplete tumor resection, and report lumbar spine and forearm bone mineral density (BMD) changes during 5 years of follow-up. We present clinical, radiologic, histologic, and bone densitometry data as well as serum FGF-23 levels (determined with use of a novel C-terminal enzyme-linked immunosorbent assay) from the study patient and discuss these findings in the context of previous literature. A 52-year-old man, who presented with muscle weakness and multiple fractures, was found to have low values for serum phosphorus, serum 1,25-dihydroxyvitamin D, and maximal tubular reabsorption of phosphate per glomerular filtration rate, a high level of serum alkaline phosphatase, and a normal serum concentration of parathyroid hormone, characteristic of tumor-induced osteomalacia. Magnetic resonance imaging to evaluate an abnormality of the left foot revealed a soft tissue mass, biopsy of which confirmed the presence of a benign, phosphaturic, mesenchymal tumor. The baseline serum FGF-23 level (2,050 RU/mL) was more than 17 times the upper limit of normal for adults (23 to 118 RU/mL) and decreased substantially within 1 day after partial resection of the tumor but remained above normal postoperatively. BMD changes indicated rapid substantial recovery of vertebral BMD but ongoing loss of forearm bone density. The serum FGF-23 level is high in a substantial proportion of patients with tumor-induced osteomalacia. The postoperative above normal levels of serum FGF-23 correlated with known persistence of tumor in our study patient. In a patient with normal renal function, such as our study patient, levels of serum FGF-23 studied with use of the C-terminal enzyme-linked immunosorbent assay reached their nadir within 24 hours postoperatively. This result suggests that this assay can provide clinicians with rapid prognostic information in patients with known or suspected residual tumor. BMD should be assessed at both appendicular and axial sites in patients with persistent tumor-induced osteomalacia.

Summary of Environmental Monitoring and Assessment Program (EMAP) activities in South Dakota, 2000-2004

USGS Publications Warehouse

Heakin, Allen J.; Neitzert, Kathleen M.; Shearer, Jeffrey S.

2006-01-01

The U.S. Environmental Protection Agency (USEPA) initiated data-collection activities for the Environmental Monitoring and Assessment Program-West (EMAP-West) in South Dakota during 2000. The objectives of the study were to develop the monitoring tools necessary to produce unbiased estimates of the ecological condition of surface waters across a large geographic area of the western United States, and to demonstrate the effectiveness of those tools in a large-scale assessment. In 2001, the U.S. Geological Survey (USGS) and the South Dakota Department of Game, Fish and Parks (GF&P) established a cooperative agreement and assumed responsibility for completing the remaining assessments for the perennial, wadable streams of the EMAP-West in the State. Stream assessment sites were divided into two broad categories-the first category of sites was randomly selected and assigned by the USEPA for South Dakota. The second category consisted of sites that were specifically selected because they appeared to have reasonable potential for representing the best available physical, chemical, and biological conditions in the State. These sites comprise the second category of assessment sites and were called 'reference' sites and were selected following a detailed evaluation process. Candidate reference site data will serve as a standard or benchmark for assessing the overall ecological condition of the randomly selected sites. During 2000, the USEPA completed 22 statewide stream assessments in South Dakota. During 2001-2003, the USGS and GF&P completed another 42 stream assessments bringing the total of randomly selected stream assessments within South Dakota to 64. In addition, 18 repeat assessments designed to meet established quality-assurance/quality-control requirements were completed at 12 of these 64 sites. During 2002-2004, the USGS in cooperation with GF&P completed stream assessments at 45 candidate reference sites. Thus, 109 sites had stream assessments completed in South Dakota for EMAP-West (2000-2004). Relatively early in the EMAP-West stream-assessment process, it became apparent that for some streams in south-central South Dakota, in-stream conditions varied considerably over relatively short distances of only a few miles. These changes appeared to be a result of geomorphic changes associated with changes in the underlying geology. For these streams, moving stream assessment sites short distances upstream or downstream had the potential to provide substantially different bioassessment data. In order to obtain a better understanding of how geology influences stream conditions, two streams located in south-central South Dakota were chosen for multiple stream sampling at sites located along their longitudinal profile at points where notable changes in geomorphology were observed. Subsequently, three sites on Bear-in-the-Lodge Creek and three sites on Black Pipe Creek were selected for multiple stream sampling using EMAP-West protocols so that more could be learned about geologic influences on stream conditions. Values for dissolved oxygen and specific conductance generally increased from upstream to downstream locations on Bear-in-the-Lodge Creek. Values for pH and water temperature generally decreased from upstream to downstream locations. Decreasing water temperature could be indicative of ground-water inflows. Values for dissolved oxygen, pH, and water temperature generally increased from upstream to downstream locations on Black Pipe Creek. The increase in temperature at the lower sites is a result of less dense riparian cover, and the warmer water also could account for the lower concentrations of dissolved oxygen found in the lower reaches of Black Pipe Creek. Values for specific conductance were more than three times greater at the lower site (1,342 microsiemens per centimeter (?S/cm)) than at the upper site (434 ?S/cm). The increase probably occurs when the stream transitions from contacting the underlying Ar

Improving polio vaccination during supplementary campaigns at areas of mass transit in India

PubMed Central

2010-01-01

Background In India, children who are traveling during mass immunization campaigns for polio represent a substantial component of the total target population. These children are not easily accessible to health workers and may thus not receive vaccine. Vaccination activities at mass transit sites (such as major intersections, bus depots and train stations), can increase the proportion of children vaccinated but the effectiveness of these activities, and factors associated with their success, have not been rigorously evaluated. Methods We assessed data from polio vaccination activities in Jyotiba Phule Nagar district, Uttar Pradesh, India, conducted in June 2006. We used trends in the vaccination results from the June activities to plan the timing, locations, and human resource requirements for transit vaccination activities in two out of the seven blocks in the district for the July 2006 supplementary immunization activity (SIA). In July, similar data was collected and for the first time vaccination teams also recorded the proportion of children encountered each day who were vaccinated (a new monitoring system). Results In June, out of the 360,937 total children vaccinated, 34,643 (9.6%) received vaccinations at mass transit sites. In the July SIA, after implementation of a number of changes based on the June monitoring data, 36,475 children were vaccinated at transit sites (a 5.3% increase). Transit site vaccinations in July increased in the two intervention blocks from 18,194 to 21,588 (18.7%) and decreased from 16,449 to 14,887 (9.5%) in the five other blocks. The new monitoring system showed the proportion of unvaccinated children at street intersection transit sites in the July campaign decreased from 24% (1,784/7,405) at the start of the campaign to 3% (143/5,057) by the end of the SIA, consistent with findings from the more labor-intensive post-vaccination coverage surveys routinely performed by the program. Conclusions Analysis of vaccination data from transit sites can inform program management changes leading to improved outcomes in polio immunization campaigns. The number of vaccinated children encountered should be routinely recorded by transit teams and may provide a useful, inexpensive alternative mechanism to assess program coverage. PMID:20459824

PSYCHOLOGY IN THE TEACHER PREPARATION PROGRAM.

ERIC Educational Resources Information Center

HERBERT, JOHN; WILLIAMS, DONALD

SUBSTANTIAL CHANGE IN THE FORM AND SUBSTANCE OF PSYCHOLOGY OFFERINGS IN TEACHER PREPARATION PROGRAMS MAY BE IMMINENT. ALTHOUGH THERE SEEMS TO BE SUBSTANTIAL AGREEMENT THAT PSYCHOLOGY SHOULD BE TAUGHT, AGREEMENT THAT CHANGES MUST BE MADE IS GENERAL. COURSE OBJECTIVES FORMULATED BY THE PSYCHOLOGICAL FOUNDATIONS PLANNING GROUP ARE LISTED. IT IS…

Model-based scenario planning to inform climate change adaptation in the Northern Great Plains—Final report

USGS Publications Warehouse

Symstad, Amy J.; Miller, Brian W.; Friedman, Jonathan M.; Fisichelli, Nicholas A.; Ray, Andrea J.; Rowland, Erika; Schuurman, Gregor W.

2017-12-18

Public SummaryWe worked with managers in two focal areas to plan for the uncertain future by integrating quantitative climate change scenarios and simulation modeling into scenario planning exercises.In our central North Dakota focal area, centered on Knife River Indian Villages National Historic Site, managers are concerned about how changes in flood severity and growing conditions for native and invasive plants may affect archaeological resources and cultural landscapes associated with the Knife and Missouri Rivers. Climate projections and hydrological modeling based on those projections indicate plausible changes in spring and summer soil moisture ranging from a 7 percent decrease to a 13 percent increase and maximum winter snowpack (important for spring flooding) changes ranging from a 13 percent decrease to a 47 percent increase. Facilitated discussions among managers and scientists exploring the implications of these different climate scenarios for resource management revealed potential conflicts between protecting archeological sites and fostering riparian cottonwood forests. The discussions also indicated the need to prioritize archeological sites for excavation or protection and culturally important plant species for intensive management attention.In our southwestern South Dakota focal area, centered on Badlands National Park, managers are concerned about how changing climate will affect vegetation production, wildlife populations, and erosion of fossils, archeological artifacts, and roads. Climate scenarios explored by managers and scientists in this focal area ranged from a 13 percent decrease to a 33 percent increase in spring precipitation, which is critical to plant growth in the northern Great Plains region, and a slight decrease to a near doubling of intense rain events. Facilitated discussions in this focal area concluded that greater effort should be put into preparing for emergency protection, excavation, and preservation of exposed fossils or artifacts and revealed substantial opportunities for different agencies to learn from each other and cooperate on common management goals. Follow up quantitative simulation modeling of grassland dynamics helped quantify the degree of change expected in vegetation production under the wide range of climate scenarios and suggested that (a) low grazing rates could be adversely affecting vegetation composition in the national park and (b) understanding of the management practices needed to maintain desired vegetation conditions is incomplete.

Drought stress and tree size determine stem CO2 efflux in a tropical forest.

PubMed

Rowland, Lucy; da Costa, Antonio C L; Oliveira, Alex A R; Oliveira, Rafael S; Bittencourt, Paulo L; Costa, Patricia B; Giles, Andre L; Sosa, Azul I; Coughlin, Ingrid; Godlee, John L; Vasconcelos, Steel S; Junior, João A S; Ferreira, Leandro V; Mencuccini, Maurizio; Meir, Patrick

2018-06-01

CO 2 efflux from stems (CO 2_stem ) accounts for a substantial fraction of tropical forest gross primary productivity, but the climate sensitivity of this flux remains poorly understood. We present a study of tropical forest CO 2_stem from 215 trees across wet and dry seasons, at the world's longest running tropical forest drought experiment site. We show a 27% increase in wet season CO 2_stem in the droughted forest relative to a control forest. This was driven by increasing CO 2_stem in trees 10-40 cm diameter. Furthermore, we show that drought increases the proportion of maintenance to growth respiration in trees > 20 cm diameter, including large increases in maintenance respiration in the largest droughted trees, > 40 cm diameter. However, we found no clear taxonomic influence on CO 2_stem and were unable to accurately predict how drought sensitivity altered ecosystem scale CO 2_stem , due to substantial uncertainty introduced by contrasting methods previously employed to scale CO 2_stem fluxes. Our findings indicate that under future scenarios of elevated drought, increases in CO 2_stem may augment carbon losses, weakening or potentially reversing the tropical forest carbon sink. However, due to substantial uncertainties in scaling CO 2_stem fluxes, stand-scale future estimates of changes in stem CO 2 emissions remain highly uncertain. © 2018 The Authors New Phytologist © 2018 New Phytologist Trust.

Progression of language decline and cortical atrophy in subtypes of primary progressive aphasia.

PubMed

Rogalski, E; Cobia, D; Harrison, T M; Wieneke, C; Weintraub, S; Mesulam, M-M

2011-05-24

To examine the longitudinal course of primary progressive aphasia (PPA) over a 2-year period and to offer quantitative ranges of expected change that could be used to guide the design and evaluation of therapeutic intervention trials. Regional changes of cortical thickness and whole-brain cortical volume loss as well as neuropsychological language performance were assessed at baseline and 2 years later in 13 rigorously characterized patients who fulfilled research criteria for logopenic, agrammatic, and semantic PPA subtypes (6 PPA-L, 3 PPA-G, and 4 PPA-S). There was substantial progression of clinical deficits and cortical atrophy over 2 years. Neuropsychological language performance patterns lost the sharp distinctions that differentiated one PPA variant from another. Nonetheless, the subtype-specific differential impairment of word comprehension vs grammatical processing was largely maintained. Peak atrophy sites spread beyond the initial distinctive locations that characterized each of the 3 subtypes and displayed a more convergent distribution encompassing all 3 major components of the language network: the inferior frontal gyrus, the temporoparietal junction, and lateral temporal cortex. Despite the progression, overall peak atrophy remained lateralized to the left hemisphere. The results suggest that the unique features, which sharply differentiate the PPA variants at the early to middle stages, may lose their distinctiveness as the degeneration becomes more severe. Given the substantial atrophy over 2 years, PPA clinical trials may require fewer patients and shorter study durations than Alzheimer disease trials to detect significant therapeutic effects.

Progression of language decline and cortical atrophy in subtypes of primary progressive aphasia

PubMed Central

Cobia, D.; Harrison, T.M.; Wieneke, C.; Weintraub, S.; Mesulam, M.-M.

2011-01-01

Objectives: To examine the longitudinal course of primary progressive aphasia (PPA) over a 2-year period and to offer quantitative ranges of expected change that could be used to guide the design and evaluation of therapeutic intervention trials. Methods: Regional changes of cortical thickness and whole-brain cortical volume loss as well as neuropsychological language performance were assessed at baseline and 2 years later in 13 rigorously characterized patients who fulfilled research criteria for logopenic, agrammatic, and semantic PPA subtypes (6 PPA-L, 3 PPA-G, and 4 PPA-S). Results: There was substantial progression of clinical deficits and cortical atrophy over 2 years. Neuropsychological language performance patterns lost the sharp distinctions that differentiated one PPA variant from another. Nonetheless, the subtype-specific differential impairment of word comprehension vs grammatical processing was largely maintained. Peak atrophy sites spread beyond the initial distinctive locations that characterized each of the 3 subtypes and displayed a more convergent distribution encompassing all 3 major components of the language network: the inferior frontal gyrus, the temporoparietal junction, and lateral temporal cortex. Despite the progression, overall peak atrophy remained lateralized to the left hemisphere. Conclusions: The results suggest that the unique features, which sharply differentiate the PPA variants at the early to middle stages, may lose their distinctiveness as the degeneration becomes more severe. Given the substantial atrophy over 2 years, PPA clinical trials may require fewer patients and shorter study durations than Alzheimer disease trials to detect significant therapeutic effects. PMID:21606451

Summer Precipitation Predicts Spatial Distributions of Semiaquatic Mammals

PubMed Central

Ahlers, Adam A.; Cotner, Lisa A.; Wolff, Patrick J.; Mitchell, Mark A.; Heske, Edward J.; Schooley, Robert L.

2015-01-01

Climate change is predicted to increase the frequency of droughts and intensity of seasonal precipitation in many regions. Semiaquatic mammals should be vulnerable to this increased variability in precipitation, especially in human-modified landscapes where dispersal to suitable habitat or temporary refugia may be limited. Using six years of presence-absence data (2007–2012) spanning years of record-breaking drought and flood conditions, we evaluated regional occupancy dynamics of American mink (Neovison vison) and muskrats (Ondatra zibethicus) in a highly altered agroecosystem in Illinois, USA. We used noninvasive sign surveys and a multiseason occupancy modeling approach to estimate annual occupancy rates for both species and related these rates to summer precipitation. We also tracked radiomarked individuals to assess mortality risk for both species when moving in terrestrial areas. Annual model-averaged estimates of occupancy for mink and muskrat were correlated positively to summer precipitation. Mink and muskrats were widespread during a year (2008) with above-average precipitation. However, estimates of site occupancy declined substantially for mink (0.56) and especially muskrats (0.09) during the severe drought of 2012. Mink are generalist predators that probably use terrestrial habitat during droughts. However, mink had substantially greater risk of mortality away from streams. In comparison, muskrats are more restricted to aquatic habitats and likely suffered high mortality during the drought. Our patterns are striking, but a more mechanistic understanding is needed of how semiaquatic species in human-modified ecosystems will respond ecologically in situ to extreme weather events predicted by climate-change models. PMID:26284916

Development of sedentary communities in the Maya lowlands: coexisting mobile groups and public ceremonies at Ceibal, Guatemala.

PubMed

Inomata, Takeshi; MacLellan, Jessica; Triadan, Daniela; Munson, Jessica; Burham, Melissa; Aoyama, Kazuo; Nasu, Hiroo; Pinzón, Flory; Yonenobu, Hitoshi

2015-04-07

Our archaeological investigations at Ceibal, a lowland Maya site located in the Pasión region, documented that a formal ceremonial complex was built around 950 B.C. at the onset of the Middle Preclassic period, when ceramics began to be used in the Maya lowlands. Our refined chronology allowed us to trace the subsequent social changes in a resolution that had not been possible before. Many residents of Ceibal appear to have remained relatively mobile during the following centuries, living in ephemeral post-in-ground structures and frequently changing their residential localities. In other parts of the Pasión region, there may have existed more mobile populations who maintained the traditional lifestyle of the preceramic period. Although the emerging elite of Ceibal began to live in a substantial residential complex by 700 B.C., advanced sedentism with durable residences rebuilt in the same locations and burials placed under house floors was not adopted in most residential areas until 500 B.C., and did not become common until 300 B.C. or the Late Preclassic period. During the Middle Preclassic period, substantial formal ceremonial complexes appear to have been built only at a small number of important communities in the Maya lowlands, and groups with different levels of sedentism probably gathered for their constructions and for public rituals held in them. These collaborative activities likely played a central role in socially integrating diverse groups with different lifestyles and, eventually, in developing fully established sedentary communities.

Summer Precipitation Predicts Spatial Distributions of Semiaquatic Mammals.

PubMed

Ahlers, Adam A; Cotner, Lisa A; Wolff, Patrick J; Mitchell, Mark A; Heske, Edward J; Schooley, Robert L

2015-01-01

Climate change is predicted to increase the frequency of droughts and intensity of seasonal precipitation in many regions. Semiaquatic mammals should be vulnerable to this increased variability in precipitation, especially in human-modified landscapes where dispersal to suitable habitat or temporary refugia may be limited. Using six years of presence-absence data (2007-2012) spanning years of record-breaking drought and flood conditions, we evaluated regional occupancy dynamics of American mink (Neovison vison) and muskrats (Ondatra zibethicus) in a highly altered agroecosystem in Illinois, USA. We used noninvasive sign surveys and a multiseason occupancy modeling approach to estimate annual occupancy rates for both species and related these rates to summer precipitation. We also tracked radiomarked individuals to assess mortality risk for both species when moving in terrestrial areas. Annual model-averaged estimates of occupancy for mink and muskrat were correlated positively to summer precipitation. Mink and muskrats were widespread during a year (2008) with above-average precipitation. However, estimates of site occupancy declined substantially for mink (0.56) and especially muskrats (0.09) during the severe drought of 2012. Mink are generalist predators that probably use terrestrial habitat during droughts. However, mink had substantially greater risk of mortality away from streams. In comparison, muskrats are more restricted to aquatic habitats and likely suffered high mortality during the drought. Our patterns are striking, but a more mechanistic understanding is needed of how semiaquatic species in human-modified ecosystems will respond ecologically in situ to extreme weather events predicted by climate-change models.

Assessing Impacts of Disturbances and Climate Change on Carbon Stocks in Mexican Semidry Forests of the Yucatan Peninsula

NASA Astrophysics Data System (ADS)

Dai, Z.; Birdsey, R.; Johnson, K.; Dupuy, J. M.; Hernandez-Stefanoni, J. L.; Richardson, K.

2014-12-01

The spatially explicit biogeochemical model Forest-DNDC was used to estimate carbon dynamics with disturbances and climate change in secondary semidry forests in Yucatan Peninsula. The model was validated using observations from 276 field plots in a 350 km2 region of semi-deciduous forest surrounding the intensive monitoring site at Kaxil Kiuic, and it performed well with high performance efficiency (E=0.79, R2=0.83). The simulation results showed substantial spatial differences in biomass in the forests due to historical disturbance patterns and heterogeneous forest environments. The simulated impacts of the disturbances that occurred from 1998-2010 revealed an estimated loss of total biomass carbon storage of 154.7 Gg due mainly to about 12 km2 of forestland loss. The results from disturbance scenarios indicate that disastrous storms, which are not uncommon in the Yucatan Peninsula, can substantially impact carbon storage in a short time. However, warming can produce a long-term impact on carbon sequestration, due principally to the decrease in biomass carbon at a mean rate of over 100 kg ha-1yr-1 with an increase in temperature by 1 degree Celsius. The forests in this area are highly sensitive to warming due to a semidry climate where the evapotranspiration is higher than precipitation. Even if each degree of warming increase is accompanied by an increase in precipitation of 10%, the significant impact of warming cannot be dismissed.

An integrated map of genetic variation from 1,092 human genomes

PubMed Central

2012-01-01

Summary Through characterising the geographic and functional spectrum of human genetic variation, the 1000 Genomes Project aims to build a resource to help understand the genetic contribution to disease. We describe the genomes of 1,092 individuals from 14 populations, constructed using a combination of low-coverage whole-genome and exome sequencing. By developing methodologies to integrate information across multiple algorithms and diverse data sources we provide a validated haplotype map of 38 million SNPs, 1.4 million indels and over 14 thousand larger deletions. We show that individuals from different populations carry different profiles of rare and common variants and that low-frequency variants show substantial geographic differentiation, which is further increased by the action of purifying selection. We show that evolutionary conservation and coding consequence are key determinants of the strength of purifying selection, that rare-variant load varies substantially across biological pathways and that each individual harbours hundreds of rare non-coding variants at conserved sites, such as transcription-factor-motif disrupting changes. This resource, which captures up to 98% of accessible SNPs at a frequency of 1% in populations of medical genetics focus, enables analysis of common and low-frequency variants in individuals from diverse, including admixed, populations. PMID:23128226

Healthier vending machines in workplaces: both possible and effective.

PubMed

Gorton, Delvina; Carter, Julie; Cvjetan, Branko; Ni Mhurchu, Cliona

2010-03-19

To develop healthier vending guidelines and assess their effect on the nutrient content and sales of snack products sold through hospital vending machines, and on staff satisfaction. Nutrition guidelines for healthier vending machine products were developed and implemented in 14 snack vending machines at two hospital sites in Auckland, New Zealand. The guidelines comprised threshold criteria for energy, saturated fat, sugar, and sodium content of vended foods. Sales data were collected prior to introduction of the guidelines (March-May 2007), and again post-introduction (March-May 2008). A food composition database was used to assess impact of the intervention on nutrient content of purchases. A staff survey was also conducted pre- and post-intervention to assess acceptability. Pre-intervention, 16% of staff used vending machines once a week or more, with little change post-intervention (15%). The guidelines resulted in a substantial reduction in the amount of energy (-24%), total fat (-32%), saturated fat (-41%), and total sugars (-30%) per 100 g product sold. Sales volumes were not affected, and the proportion of staff satisfied with vending machine products increased. Implementation of nutrition guidelines in hospital vending machines led to substantial improvements in nutrient content of vending products sold. Wider implementation of these guidelines is recommended.

The temporal characteristics of the early and late stages of the L- and M-cone pathways that signal color

PubMed Central

Petrova, Daniela; Henning, G. Bruce; Stockman, Andrew

2013-01-01

Flickering long-wavelength light appears more yellow than steady light of the same average intensity. The hue change is consistent with distortion of the visual signal at some nonlinear site (or sites) that produces temporal components not present in the original stimulus (known as distortion products). We extracted the temporal attenuation characteristics of the early (prenonlinearity) and late (post-nonlinearity) filter stages in the L- and M-cone chromatic pathway by varying the input stimulus to manipulate the distortion products and the measuring of the observers' sensitivity to them. The early, linear, filter stage acts like a band-pass filter peaking at 10–15 Hz with substantial sensitivity losses at both lower and higher frequencies. Its characteristics are consistent with nonlinearity being early in the visual pathway but following surround inhibition. The late stage, in contrast, acts like a low-pass filter with a cutoff frequency around 3 Hz. The response of the early stage speeds up with radiance, but the late stage does not. A plausible site for the nonlinearity, which modelling suggests may be smoothly compressive but with a hard limit at high input levels, is after surround inhibition from the horizontal cells. PMID:23457358

Clostridium difficile infection in returning travellers

PubMed Central

Stevens, A. Michal; Esposito, Douglas H.; Stoney, Rhett J.; Hamer, Davidson H.; Flores-Figueroa, Jose; Bottieau, Emmanuel; Connor, Bradley A.; Gkrania-Klotsas, Effrossyni; Goorhuis, Abraham; Hynes, Noreen A.; Libman, Michael; Lopez-Velez, Rogelio; McCarthy, Anne E.; von Sonnenburg, Frank; Schwartz, Eli; van Genderen, Perry J.J.; Benson, L. Scott; Leung, Daniel T.

2017-01-01

Background There is increasing recognition of the contribution of community-acquired cases to the global burden of Clostridium difficile infection (CDI). The epidemiology of CDI among international travellers is poorly understood, and factors associated with international travel, such as antibiotic use and changes in gut microbiota, could potentially put travellers at higher risk. Methods We summarized demographic, travel-associated and geographic characteristics of travellers with CDI in the GeoSentinel database from 1997 to 2015. We also surveyed GeoSentinel sites to compare various testing indications, approaches, and diagnostic modalities. Results We identified 260 GeoSentinel records, including 187 that satisfied criteria for analysis (confirmed cases in non-immigrant travellers aged >2 years, seen <12 weeks post-travel). CDI was reported in all age groups and in travellers to all world regions; the largest proportions of cases having destinations in Asia (31%), Central/South America or the Caribbean (30%) and Africa (24%). Our site survey revealed substantial heterogeneity of testing approaches between sites; the most commonly used test was the C. difficile toxin gene PCR. Conclusions CDI is encountered in returning international travellers, although there is considerable variability in testing practices. These data underscore the importance of awareness of C. difficile as a potential cause of travel-associated diarrhoea. PMID:28355613

Rapid warming accelerates tree growth decline in semi-arid forests of Inner Asia.

PubMed

Liu, Hongyan; Park Williams, A; Allen, Craig D; Guo, Dali; Wu, Xiuchen; Anenkhonov, Oleg A; Liang, Eryuan; Sandanov, Denis V; Yin, Yi; Qi, Zhaohuan; Badmaeva, Natalya K

2013-08-01

Forests around the world are subject to risk of high rates of tree growth decline and increased tree mortality from combinations of climate warming and drought, notably in semi-arid settings. Here, we assess how climate warming has affected tree growth in one of the world's most extensive zones of semi-arid forests, in Inner Asia, a region where lack of data limits our understanding of how climate change may impact forests. We show that pervasive tree growth declines since 1994 in Inner Asia have been confined to semi-arid forests, where growing season water stress has been rising due to warming-induced increases in atmospheric moisture demand. A causal link between increasing drought and declining growth at semi-arid sites is corroborated by correlation analyses comparing annual climate data to records of tree-ring widths. These ring-width records tend to be substantially more sensitive to drought variability at semi-arid sites than at semi-humid sites. Fire occurrence and insect/pathogen attacks have increased in tandem with the most recent (2007-2009) documented episode of tree mortality. If warming in Inner Asia continues, further increases in forest stress and tree mortality could be expected, potentially driving the eventual regional loss of current semi-arid forests. © 2013 John Wiley & Sons Ltd.

Efficacy of CPTH-treated egg baits for removing ravens

USGS Publications Warehouse

Coates, Peter S.; Spencer, Jack O.; Delehanty, David J.

2007-01-01

Human-altered landscapes have provided resource subsidies for common ravens (Corvus corax) resulting in a substantial increase in raven abundance and distribution throughout the United States and Canada in the past 25 years. Ravens are effective predators of eggs and young of ground-nesting birds. During 2002–2005, we tested whether chicken egg baits treated with CPTH (3-chloro-p-toluidine hydrochloride) could be used to manage raven numbers in an area where raven depredation was impacting sharp-tailed grouse (Tympanuchus phasianellus columbianus) and greater sage-grouse (Centrocercus urophasianus) populations in Nevada. We performed multiple raven surveys at a treatment site and 3 control sites and used videography to identify predators and estimate egg bait consumption. We detected reductions in raven abundances over time at the treatment site during all years of this study and did not detect reductions in raven abundances at control sites. Videographic observations of egg consumption indicated that the standard 1:2 ratio (1 raven removed/2 eggs consumed) substantially overestimated raven take because nontarget species (rodents) consumed some egg baits. The technique described here likely will be effective at reducing raven densities where this is the intended management action.

Method for producing rapid pH changes

DOEpatents

Clark, John H.; Campillo, Anthony J.; Shapiro, Stanley L.; Winn, Kenneth R.

1981-01-01

A method of initiating a rapid pH change in a solution by irradiating the solution with an intense flux of electromagnetic radiation of a frequency which produces a substantial pK change to a compound in solution. To optimize the resulting pH change, the compound being irradiated in solution should have an excited state lifetime substantially longer than the time required to establish an excited state acid-base equilibrium in the solution. Desired pH changes can be accomplished in nanoseconds or less by means of picosecond pulses of laser radiation.

Method for producing rapid pH changes

DOEpatents

Clark, J.H.; Campillo, A.J.; Shapiro, S.L.; Winn, K.R.

A method of initiating a rapid pH change in a solution comprises irradiating the solution with an intense flux of electromagnetic radiation of a frequency which produces a substantial pK change to a compound in solution. To optimize the resulting pH change, the compound being irradiated in solution should have an excited state lifetime substantially longer than the time required to establish an excited state acid-base equilibrium in the solution. Desired pH changes can be accomplished in nanoseconds or less by means of picosecond pulses of laser radiation.

Instability of plasmid DNA sequences: macro and micro evolution of the antibiotic resistance plasmid R6-5.

PubMed

Timmis, K N; Cabello, F; Andrés, I; Nordheim, A; Burkhardt, H J; Cohen, S N

1978-11-16

Detailed examination of the structure of cloned DNA fragments of the R6-5 antibiotic resistance plasmid has revealed a substantial degree of polynucleotide sequence heterogeneity and indicates that sequence rearrangements in plasmids and possible other replicons occur more frequently than has hitherto been appreciated. The sequences changes in cloned R6-5 fragments were shown in some instances to have occurred prior to cloning, i.e. existing in the original population of R6-5 molecules that was obtained from a single bacterial clone and by several different criteria judged to be homogeneous, and in others to have occurred either during the cloning procedure or during subsequent propagation of hybrid molecules. The molecular changes that are described involved insertion/deletion of the previously characterized IS2 insertion element, formation of a new inverted repeat structure probably by duplication of a preexisting R6-5 DNA sequence, sequence inversion, and loss and gain of restriction endonuclease cleavage sites.

Laboratory investigations on the role of sediment surface and ground water chemistry in transport of bacteria through a contaminated Sandy Aquifer

USGS Publications Warehouse

Scholl, M.A.; Harvey, R.W.

1992-01-01

The effects of pH and sediment surface characteristics on sorption of indigenous groundwater bacteria were determined using contaminated and uncontaminated aquifer material from Cape Cod, MA. Over the pH range of the aquifer (5-7), the extent of bacterial sorption onto sediment in uncontaminated groundwater was strongly pH-dependent, but relatively pH-insensitive in contaminated groundwater from the site. Bacterial sorption was also affected by the presence of oxyhydroxide coatings (iron, aluminum, and manganese). Surface coating effects were most pronounced in uncontaminated groundwater (pH 6.4 at 10??C). Desorption of attached bacteria (up to 14% of the total number of labeled cells added) occurred in both field and laboratory experiments upon adjustment of groundwater to pH 8. The dependence of bacterial sorption upon environmental conditions suggests that bacterial immobilization could change substantially over relatively short distances in contaminated, sandy aquifers and that effects caused by changes in groundwater geochemistry can be significant.

Stream water temperature limits occupancy of salamanders in mid-Atlantic protected areas

USGS Publications Warehouse

Grant, Evan H. Campbell; Wiewel, Amber N. M.; Rice, Karen C.

2014-01-01

Stream ecosystems are particularly sensitive to urbanization, and tolerance of water-quality parameters is likely important to population persistence of stream salamanders. Forecasted climate and landscape changes may lead to significant changes in stream flow, chemical composition, and temperatures in coming decades. Protected areas where landscape alterations are minimized will therefore become increasingly important for salamander populations. We surveyed 29 streams at three national parks in the highly urbanized greater metropolitan area of Washington, DC. We investigated relationships among water-quality variables and occupancy of three species of stream salamanders (Desmognathus fuscus, Eurycea bislineata, and Pseudotriton ruber). With the use of a set of site-occupancy models, and accounting for imperfect detection, we found that stream-water temperature limits salamander occupancy. There was substantial uncertainty about the effects of the other water-quality variables, although both specific conductance (SC) and pH were included in competitive models. Our estimates of occupancy suggest that temperature, SC, and pH have some importance in structuring stream salamander distribution.

Simulating 2,368 temperate lakes reveals weak coherence in stratification phenology

USGS Publications Warehouse

Read, Jordan S.; Winslow, Luke A.; Hansen, Gretchen J. A.; Van Den Hoek, Jamon; Hanson, Paul C.; Bruce, Louise C; Markfort, Corey D.

2014-01-01

Changes in water temperatures resulting from climate warming can alter the structure and function of aquatic ecosystems. Lake-specific physical characteristics may play a role in mediating individual lake responses to climate. Past mechanistic studies of lake-climate interactions have simulated generic lake classes at large spatial scales or performed detailed analyses of small numbers of real lakes. Understanding the diversity of lake responses to climate change across landscapes requires a hybrid approach that couples site-specific lake characteristics with broad-scale environmental drivers. This study provides a substantial advancement in lake ecosystem modeling by combining open-source tools with freely available continental-scale data to mechanistically model daily temperatures for 2,368 Wisconsin lakes over three decades (1979-2011). The model accurately predicted observed surface layer temperatures (RMSE: 1.74°C) and the presence/absence of stratification (81.1% agreement). Among-lake coherence was strong for surface temperatures and weak for the timing of stratification, suggesting individual lake characteristics mediate some - but not all - ecologically relevant lake responses to climate.

Fishing down nutrients on coral reefs.

PubMed

Allgeier, Jacob E; Valdivia, Abel; Cox, Courtney; Layman, Craig A

2016-08-16

Fishing is widely considered a leading cause of biodiversity loss in marine environments, but the potential effect on ecosystem processes, such as nutrient fluxes, is less explored. Here, we test how fishing on Caribbean coral reefs influences biodiversity and ecosystem functions provided by the fish community, that is, fish-mediated nutrient capacity. Specifically, we modelled five processes of nutrient storage (in biomass) and supply (via excretion) of nutrients, as well as a measure of their multifunctionality, onto 143 species of coral reef fishes across 110 coral reef fish communities. These communities span a gradient from extreme fishing pressure to protected areas with little to no fishing. We find that in fished sites fish-mediated nutrient capacity is reduced almost 50%, despite no substantial changes in the number of species. Instead, changes in community size and trophic structure were the primary cause of shifts in ecosystem function. These findings suggest that a broader perspective that incorporates predictable impacts of fishing pressure on ecosystem function is imperative for effective coral reef conservation and management.

Long-term, high frequency in situ measurements of intertidal mussel bed temperatures using biomimetic sensors

PubMed Central

Helmuth, Brian; Choi, Francis; Matzelle, Allison; Torossian, Jessica L.; Morello, Scott L.; Mislan, K.A.S.; Yamane, Lauren; Strickland, Denise; Szathmary, P. Lauren; Gilman, Sarah E.; Tockstein, Alyson; Hilbish, Thomas J.; Burrows, Michael T.; Power, Anne Marie; Gosling, Elizabeth; Mieszkowska, Nova; Harley, Christopher D.G.; Nishizaki, Michael; Carrington, Emily; Menge, Bruce; Petes, Laura; Foley, Melissa M.; Johnson, Angela; Poole, Megan; Noble, Mae M.; Richmond, Erin L.; Robart, Matt; Robinson, Jonathan; Sapp, Jerod; Sones, Jackie; Broitman, Bernardo R.; Denny, Mark W.; Mach, Katharine J.; Miller, Luke P.; O’Donnell, Michael; Ross, Philip; Hofmann, Gretchen E.; Zippay, Mackenzie; Blanchette, Carol; Macfarlan, J.A.; Carpizo-Ituarte, Eugenio; Ruttenberg, Benjamin; Peña Mejía, Carlos E.; McQuaid, Christopher D.; Lathlean, Justin; Monaco, Cristián J.; Nicastro, Katy R.; Zardi, Gerardo

2016-01-01

At a proximal level, the physiological impacts of global climate change on ectothermic organisms are manifest as changes in body temperatures. Especially for plants and animals exposed to direct solar radiation, body temperatures can be substantially different from air temperatures. We deployed biomimetic sensors that approximate the thermal characteristics of intertidal mussels at 71 sites worldwide, from 1998-present. Loggers recorded temperatures at 10–30 min intervals nearly continuously at multiple intertidal elevations. Comparisons against direct measurements of mussel tissue temperature indicated errors of ~2.0–2.5 °C, during daily fluctuations that often exceeded 15°–20 °C. Geographic patterns in thermal stress based on biomimetic logger measurements were generally far more complex than anticipated based only on ‘habitat-level’ measurements of air or sea surface temperature. This unique data set provides an opportunity to link physiological measurements with spatially- and temporally-explicit field observations of body temperature. PMID:27727238

Adverse weather conditions for European wheat production will become more frequent with climate change

NASA Astrophysics Data System (ADS)

Trnka, Miroslav; Rötter, Reimund P.; Ruiz-Ramos, Margarita; Kersebaum, Kurt Christian; Olesen, Jørgen E.; Žalud, Zdeněk; Semenov, Mikhail A.

2014-07-01

Europe is the largest producer of wheat, the second most widely grown cereal crop after rice. The increased occurrence and magnitude of adverse and extreme agroclimatic events are considered a major threat for wheat production. We present an analysis that accounts for a range of adverse weather events that might significantly affect wheat yield in Europe. For this purpose we analysed changes in the frequency of the occurrence of 11 adverse weather events. Using climate scenarios based on the most recent ensemble of climate models and greenhouse gases emission estimates, we assessed the probability of single and multiple adverse events occurring within one season. We showed that the occurrence of adverse conditions for 14 sites representing the main European wheat-growing areas might substantially increase by 2060 compared to the present (1981-2010). This is likely to result in more frequent crop failure across Europe. This study provides essential information for developing adaptation strategies.

Long-term, high frequency in situ measurements of intertidal mussel bed temperatures using biomimetic sensors

NASA Astrophysics Data System (ADS)

Helmuth, Brian; Choi, Francis; Matzelle, Allison; Torossian, Jessica L.; Morello, Scott L.; Mislan, K. A. S.; Yamane, Lauren; Strickland, Denise; Szathmary, P. Lauren; Gilman, Sarah E.; Tockstein, Alyson; Hilbish, Thomas J.; Burrows, Michael T.; Power, Anne Marie; Gosling, Elizabeth; Mieszkowska, Nova; Harley, Christopher D. G.; Nishizaki, Michael; Carrington, Emily; Menge, Bruce; Petes, Laura; Foley, Melissa M.; Johnson, Angela; Poole, Megan; Noble, Mae M.; Richmond, Erin L.; Robart, Matt; Robinson, Jonathan; Sapp, Jerod; Sones, Jackie; Broitman, Bernardo R.; Denny, Mark W.; Mach, Katharine J.; Miller, Luke P.; O'Donnell, Michael; Ross, Philip; Hofmann, Gretchen E.; Zippay, Mackenzie; Blanchette, Carol; Macfarlan, J. A.; Carpizo-Ituarte, Eugenio; Ruttenberg, Benjamin; Peña Mejía, Carlos E.; McQuaid, Christopher D.; Lathlean, Justin; Monaco, Cristián J.; Nicastro, Katy R.; Zardi, Gerardo

2016-10-01

At a proximal level, the physiological impacts of global climate change on ectothermic organisms are manifest as changes in body temperatures. Especially for plants and animals exposed to direct solar radiation, body temperatures can be substantially different from air temperatures. We deployed biomimetic sensors that approximate the thermal characteristics of intertidal mussels at 71 sites worldwide, from 1998-present. Loggers recorded temperatures at 10-30 min intervals nearly continuously at multiple intertidal elevations. Comparisons against direct measurements of mussel tissue temperature indicated errors of ~2.0-2.5 °C, during daily fluctuations that often exceeded 15°-20 °C. Geographic patterns in thermal stress based on biomimetic logger measurements were generally far more complex than anticipated based only on ‘habitat-level’ measurements of air or sea surface temperature. This unique data set provides an opportunity to link physiological measurements with spatially- and temporally-explicit field observations of body temperature.

Production factors influence fresh lamb longissimus colour more than muscle traits such as myoglobin concentration and pH.

PubMed

Calnan, H; Jacob, R H; Pethick, D W; Gardner, G E

2016-09-01

M. longissimus colour was measured from 8165 lambs at 24h post-mortem using a chromameter. The impact of production factors (site and year of production, slaughter group, sex, age and breed type) and muscle traits (hot carcass weight, pH24, isocitrate dehydrogenase (ICDH) activity, myoglobin, iron and zinc concentrations) on meat lightness (L*), redness (a*), yellowness (b*), hue and chroma were analysed. Greater differences in meat colour were seen between different slaughter groups and sites of production than across the range of any muscle traits. Of the muscle traits analysed, changes in pH24 had the greatest effect on meat a* (2.5 units), while myoglobin had the greatest effect on meat L* (2.9 units). The 3.1 L* unit darkening of meat with increasing lamb age (from 140 to 400days) was accounted for by increased myoglobin concentration. These results suggest that production factors are having substantial effects on lamb colour independent of known influencing muscle traits such as myoglobin concentration and pH. Copyright © 2016 Elsevier Ltd. All rights reserved.

Alaskan Wild Berry Resources and Human Health Under the Cloud of Climate Change

PubMed Central

KELLOGG, JOSHUA; WANG, JINZHI; FLINT, COURTNEY; RIBNICKY, DAVID; KUHN, PETER; DE MEJIA, ELVIRA GONZÁLEZ; RASKIN, ILYA; LILA, MARY ANN

2009-01-01

Wild berries are integral dietary components for Alaska Native tribes and a rich source of polyphenolic metabolites that can ameliorate metabolic disorders such as obesity and diabetes. In this study, five species of wild Alaskan berries (Vaccinium ovalifolium, V. uliginosum, Rubus chamaemorus, R. spectabilis, and Empetrum nigrum) were screened for bioactivity through a community-participatory research method involving three geographically-distinct tribal communities. Compositional analysis by HPLC and LC-MS2 revealed substantial site-specific variation in anthocyanins (0.01-4.39 mg/g-FW) and proanthocyanidins (0.74-6.25 mg/g-FW), and identified A-type proanthocyanidin polymers. R. spectabilis increased expression levels of preadipocyte-factor-1 (182%), and proanthocyanidin-enriched fractions from other species reduced lipid accumulation in 3T3-L1 adipocytes. Selected extracts reduced serum glucose levels in C57bl/6j mice by up to 45%. Local observations provided robust insights into effects of climatic fluctuations on berry abundance and quality, and preliminary site-specific compositional and bioactivity differences were noted, suggesting the need to monitor this Alaska Native resource as climate shifts impact the region. PMID:20025229

Fabrication of efficient TiO2-RGO heterojunction composites for hydrogen generation via water-splitting: Comparison between RGO, Au and Pt reduction sites

NASA Astrophysics Data System (ADS)

El-Bery, Haitham M.; Matsushita, Yoshihisa; Abdel-moneim, Ahmed

2017-11-01

A facile one-step synthesis approach of M/TiO2/RGO (M = Au or Pt) ternary composite by hydrothermal treatment for hydrogen generation via water-splitting was investigated. Photocurrent response measurements revealed that TiO2 (P25) nanoparticles anchored on the reduced graphene oxide (RGO) surface exhibited a p-n heterojunction interface by changing the photocurrent direction with the applied bias from reverse to forward potential. H2 evolution rate of TiO2/RGO (5 wt.%) composite was substantially enhanced by 12-fold in comparison to bare TiO2 under simulated solar light irradiation. Cyclic volatmmetry measurements manifested, that the optimized 0.3 wt.% of platinum metal loaded on TiO2/RGO composite was the most active catalytic reduction sites for hydrogen generation reaction with an initial hydrogen rate of 670 μmol h-1. This study sheds the light on the tunable semiconductor type of TiO2/RGO composite fabricated by solution mixing pathway and its merits to improve the photocatalytic activity.

Energetics of Glutamate Binding to an Ionotropic Glutamate Receptor.

PubMed

Yu, Alvin; Lau, Albert Y

2017-11-22

Ionotropic glutamate receptors (iGluRs) are ligand-gated ion channels that are responsible for the majority of excitatory transmission at the synaptic cleft. Mechanically speaking, agonist binding to the ligand binding domain (LBD) activates the receptor by triggering a conformational change that is transmitted to the transmembrane region, opening the ion channel pore. We use fully atomistic molecular dynamics simulations to investigate the binding process in the α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptor, an iGluR subtype. The string method with swarms of trajectories was applied to calculate the possible pathways glutamate traverses during ligand binding. Residues peripheral to the binding cleft are found to metastably bind the ligand prior to ligand entry into the binding pocket. Umbrella sampling simulations were performed to compute the free energy barriers along the binding pathways. The calculated free energy profiles demonstrate that metastable interactions contribute substantially to the energetics of ligand binding and form local minima in the overall free energy landscape. Protein-ligand interactions at sites outside of the orthosteric agonist-binding site may serve to lower the transition barriers of the binding process.

Detection probabilities and site occupancy estimates for amphibians at Okefenokee National Wildlife Refuge

USGS Publications Warehouse

Smith, L.L.; Barichivich, W.J.; Staiger, J.S.; Smith, Kimberly G.; Dodd, C.K.

2006-01-01

We conducted an amphibian inventory at Okefenokee National Wildlife Refuge from August 2000 to June 2002 as part of the U.S. Department of the Interior's national Amphibian Research and Monitoring Initiative. Nineteen species of amphibians (15 anurans and 4 caudates) were documented within the Refuge, including one protected species, the Gopher Frog Rana capito. We also collected 1 y of monitoring data for amphibian populations and incorporated the results into the inventory. Detection probabilities and site occupancy estimates for four species, the Pinewoods Treefrog (Hyla femoralis), Pig Frog (Rana grylio), Southern Leopard Frog (R. sphenocephala) and Carpenter Frog (R. virgatipes) are presented here. Detection probabilities observed in this study indicate that spring and summer surveys offer the best opportunity to detect these species in the Refuge. Results of the inventory suggest that substantial changes may have occurred in the amphibian fauna within and adjacent to the swamp. However, monitoring the amphibian community of Okefenokee Swamp will prove difficult because of the logistical challenges associated with a rigorous statistical assessment of status and trends.

Epoxide Hydrolase Conformational Heterogeneity for the Resolution of Bulky Pharmacologically Relevant Epoxide Substrates.

PubMed

Serrano-Hervás, Eila; Casadevall, Guillem; Garcia-Borràs, Marc; Feixas, Ferran; Osuna, Sílvia

2018-04-06

The conformational landscape of Bacillus megaterium epoxide hydrolase (BmEH) and how it is altered by mutations that confer the enzyme the ability to accept bulky epoxide substrates has been investigated. Extensive molecular dynamics (MD) simulations coupled to active site volume calculations have unveiled relevant features of the enzyme conformational dynamics and function. Our long-timescale MD simulations identify key conformational states not previously observed by means of X-ray crystallography and short MD simulations that present the loop containing one of the catalytic residues, Asp239, in a wide-open conformation, which is likely involved in the binding of the epoxide substrate. Introduction of mutations M145S and F128A dramatically alters the conformational landscape of the enzyme. These singly mutated variants can accept bulky epoxide substrates due to the disorder induced by mutation in the α-helix containing the catalytic Tyr144 and some parts of the lid domain. These changes impact the enzyme active site, which is substantially wider and more complementary to the bulky pharmacologically relevant epoxide substrates. © 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

The 2010 California Research at the Nexus of Air Quality and Climate Change (CalNex) field study

NASA Astrophysics Data System (ADS)

Ryerson, T. B.; Andrews, A. E.; Angevine, W. M.; Bates, T. S.; Brock, C. A.; Cairns, B.; Cohen, R. C.; Cooper, O. R.; de Gouw, J. A.; Fehsenfeld, F. C.; Ferrare, R. A.; Fischer, M. L.; Flagan, R. C.; Goldstein, A. H.; Hair, J. W.; Hardesty, R. M.; Hostetler, C. A.; Jimenez, J. L.; Langford, A. O.; McCauley, E.; McKeen, S. A.; Molina, L. T.; Nenes, A.; Oltmans, S. J.; Parrish, D. D.; Pederson, J. R.; Pierce, R. B.; Prather, K.; Quinn, P. K.; Seinfeld, J. H.; Senff, C. J.; Sorooshian, A.; Stutz, J.; Surratt, J. D.; Trainer, M.; Volkamer, R.; Williams, E. J.; Wofsy, S. C.

2013-06-01

The California Research at the Nexus of Air Quality and Climate Change (CalNex) field study was conducted throughout California in May, June, and July of 2010. The study was organized to address issues simultaneously relevant to atmospheric pollution and climate change, including (1) emission inventory assessment, (2) atmospheric transport and dispersion, (3) atmospheric chemical processing, and (4) cloud-aerosol interactions and aerosol radiative effects. Measurements from networks of ground sites, a research ship, tall towers, balloon-borne ozonesondes, multiple aircraft, and satellites provided in situ and remotely sensed data on trace pollutant and greenhouse gas concentrations, aerosol chemical composition and microphysical properties, cloud microphysics, and meteorological parameters. This overview report provides operational information for the variety of sites, platforms, and measurements, their joint deployment strategy, and summarizes findings that have resulted from the collaborative analyses of the CalNex field study. Climate-relevant findings from CalNex include that leakage from natural gas infrastructure may account for the excess of observed methane over emission estimates in Los Angeles. Air-quality relevant findings include the following: mobile fleet VOC significantly declines, and NOx emissions continue to have an impact on ozone in the Los Angeles basin; the relative contributions of diesel and gasoline emission to secondary organic aerosol are not fully understood; and nighttime NO3 chemistry contributes significantly to secondary organic aerosol mass in the San Joaquin Valley. Findings simultaneously relevant to climate and air quality include the following: marine vessel emissions changes due to fuel sulfur and speed controls result in a net warming effect but have substantial positive impacts on local air quality.

Thermal Stress Promotes Host Mitochondrial Degradation in Symbiotic Cnidarians: Are the Batteries of the Reef Going to Run Out?

PubMed Central

Dunn, Simon R.; Pernice, Mathieu; Green, Kathryn; Hoegh-Guldberg, Ove; Dove, Sophie G.

2012-01-01

The symbiotic relationship between cnidarians and their dinoflagellate symbionts, Symbiodinium spp, which underpins the formation of tropical coral reefs, can be destabilized by rapid changes to environmental conditions. Although some studies have concluded that a breakdown in the symbiosis begins with increased reactive oxygen species (ROS) generation within the symbiont due to a decoupling of photosynthesis, others have reported the release of viable symbionts via a variety of host cell derived mechanisms. We explored an alternative model focused upon changes in host cnidarian mitochondrial integrity in response to thermal stress. Mitochondria are often likened to being batteries of the cell, providing energy in the form of ATP, and controlling cellular pathway activation and ROS generation. The overall morphology of host mitochondria was compared to that of associated symbionts under an experimental thermal stress using confocal and electron microscopy. The results demonstrate that hyperthermic stress induces the degradation of cnidarian host mitochondria that is independent of symbiont cellular deterioration. The potential sites of host mitochondrial disruption were also assessed by measuring changes in the expression of genes associated with electron transport and ATP synthesis using quantitative RT-PCR. The primary site of degradation appeared to be downstream of complex III of the electron transport chain with a significant reduction in host cytochrome c and ATP synthase expression. The consequences of reduced expression could limit the capacity of the host to mitigate ROS generation and maintain both organelle integrity and cellular energy supplies. The disruption of host mitochondria, cellular homeostasis, and subsequent cell death irrespective of symbiont integrity highlights the importance of the host response to thermal stress and in symbiosis dysfunction that has substantial implications for understanding how coral reefs will survive in the face of climate change. PMID:22815696

Sea-level rise and archaeological site destruction: An example from the southeastern United States using DINAA (Digital Index of North American Archaeology).

PubMed

Anderson, David G; Bissett, Thaddeus G; Yerka, Stephen J; Wells, Joshua J; Kansa, Eric C; Kansa, Sarah W; Myers, Kelsey Noack; DeMuth, R Carl; White, Devin A

2017-01-01

The impact of changing climate on terrestrial and underwater archaeological sites, historic buildings, and cultural landscapes can be examined through quantitatively-based analyses encompassing large data samples and broad geographic and temporal scales. The Digital Index of North American Archaeology (DINAA) is a multi-institutional collaboration that allows researchers online access to linked heritage data from multiple sources and data sets. The effects of sea-level rise and concomitant human population relocation is examined using a sample from nine states encompassing much of the Gulf and Atlantic coasts of the southeastern United States. A 1 m rise in sea-level will result in the loss of over >13,000 recorded historic and prehistoric archaeological sites, as well as over 1000 locations currently eligible for inclusion on the National Register of Historic Places (NRHP), encompassing archaeological sites, standing structures, and other cultural properties. These numbers increase substantially with each additional 1 m rise in sea level, with >32,000 archaeological sites and >2400 NRHP properties lost should a 5 m rise occur. Many more unrecorded archaeological and historic sites will also be lost as large areas of the landscape are flooded. The displacement of millions of people due to rising seas will cause additional impacts where these populations resettle. Sea level rise will thus result in the loss of much of the record of human habitation of the coastal margin in the Southeast within the next one to two centuries, and the numbers indicate the magnitude of the impact on the archaeological record globally. Construction of large linked data sets is essential to developing procedures for sampling, triage, and mitigation of these impacts.

Prevention of emergency physician migratory contamination in a cluster randomized trial to increase tissue plasminogen activator use in stroke (the INSTINCT trial).

PubMed

Weston, Victoria C; Meurer, William J; Frederiksen, Shirley M; Fox, Allison K; Scott, Phillip A

2014-12-01

Cluster randomized trials (CRTs) are increasingly used to evaluate quality improvement interventions aimed at health care providers. In trials testing emergency department (ED) interventions, migration of emergency physicians (EPs) between hospitals is an important concern, as contamination may affect both internal and external validity. We hypothesized that geographically isolating EDs would prevent migratory contamination in a CRT designed to increase ED delivery of tissue plasminogen activator (tPA) in stroke (the INSTINCT trial). INSTINCT was a prospective, cluster randomized, controlled trial. Twenty-four Michigan community hospitals were randomly selected in matched pairs for study. Contamination was defined at the cluster level, with substantial contamination defined a priori as greater than 10% of EPs affected. Nonadherence, total crossover (contamination+nonadherence), migration distance, and characteristics were determined. Three hundred seven EPs were identified at all sites. Overall, 7 (2.3%) changed study sites. One moved between control sites, leaving 6 (2.0%) total crossovers. Of these, 2 (0.7%) moved from intervention to control (contamination); and 4 (1.3%) moved from control to intervention (nonadherence). Contamination was observed in 2 of 12 control sites, with 17% and 9% contamination of the total site EP workforce at follow-up, respectively. Average migration distance was 42 miles for all EPs moving in the study and 35 miles for EPs moving from intervention to control sites. The mobile nature of EPs should be considered in the design of quality improvement CRTs. Increased reporting of contamination in CRTs is encouraged to clarify thresholds and facilitate CRT design. Copyright © 2014 Elsevier Inc. All rights reserved.

Sea-level rise and archaeological site destruction: An example from the southeastern United States using DINAA (Digital Index of North American Archaeology)

PubMed Central

Wells, Joshua J.; Kansa, Eric C.; Kansa, Sarah W.; Myers, Kelsey Noack; DeMuth, R. Carl; White, Devin A.

2017-01-01

The impact of changing climate on terrestrial and underwater archaeological sites, historic buildings, and cultural landscapes can be examined through quantitatively-based analyses encompassing large data samples and broad geographic and temporal scales. The Digital Index of North American Archaeology (DINAA) is a multi-institutional collaboration that allows researchers online access to linked heritage data from multiple sources and data sets. The effects of sea-level rise and concomitant human population relocation is examined using a sample from nine states encompassing much of the Gulf and Atlantic coasts of the southeastern United States. A 1 m rise in sea-level will result in the loss of over >13,000 recorded historic and prehistoric archaeological sites, as well as over 1000 locations currently eligible for inclusion on the National Register of Historic Places (NRHP), encompassing archaeological sites, standing structures, and other cultural properties. These numbers increase substantially with each additional 1 m rise in sea level, with >32,000 archaeological sites and >2400 NRHP properties lost should a 5 m rise occur. Many more unrecorded archaeological and historic sites will also be lost as large areas of the landscape are flooded. The displacement of millions of people due to rising seas will cause additional impacts where these populations resettle. Sea level rise will thus result in the loss of much of the record of human habitation of the coastal margin in the Southeast within the next one to two centuries, and the numbers indicate the magnitude of the impact on the archaeological record globally. Construction of large linked data sets is essential to developing procedures for sampling, triage, and mitigation of these impacts. PMID:29186200

Direct activation of a notochord cis-regulatory module by Brachyury and FoxA in the ascidian Ciona intestinalis.

PubMed

Passamaneck, Yale J; Katikala, Lavanya; Perrone, Lorena; Dunn, Matthew P; Oda-Ishii, Izumi; Di Gregorio, Anna

2009-11-01

The notochord is a defining feature of the chordate body plan. Experiments in ascidian, frog and mouse embryos have shown that co-expression of Brachyury and FoxA class transcription factors is required for notochord development. However, studies on the cis-regulatory sequences mediating the synergistic effects of these transcription factors are complicated by the limited knowledge of notochord genes and cis-regulatory modules (CRMs) that are directly targeted by both. We have identified an easily testable model for such investigations in a 155-bp notochord-specific CRM from the ascidian Ciona intestinalis. This CRM contains functional binding sites for both Ciona Brachyury (Ci-Bra) and FoxA (Ci-FoxA-a). By combining point mutation analysis and misexpression experiments, we demonstrate that binding of both transcription factors to this CRM is necessary and sufficient to activate transcription. To gain insights into the cis-regulatory criteria controlling its activity, we investigated the organization of the transcription factor binding sites within the 155-bp CRM. The 155-bp sequence contains two Ci-Bra binding sites with identical core sequences but opposite orientations, only one of which is required for enhancer activity. Changes in both orientation and spacing of these sites substantially affect the activity of the CRM, as clusters of identical sites found in the Ciona genome with different arrangements are unable to activate transcription in notochord cells. This work presents the first evidence of a synergistic interaction between Brachyury and FoxA in the activation of an individual notochord CRM, and highlights the importance of transcription factor binding site arrangement for its function.

Radioiodinated nondegradable gonadotropin-releasing hormone analogs: new probes for the investigation of pituitary gonadotropin-releasing hormone receptors.

PubMed

Clayton, R N; Shakespear, R A; Duncan, J A; Marshall, J C; Munson, P J; Rodbard, D

1979-12-01

Studies of pituitary plasma membrane gonadotropin-releasing hormone (GnRH) receptors using [125I]-iodo-GnRH suffer major disadvantages. Only a small (less than 25%) proportion of specific tracer binding is to high affinity sites, with more than 70% bound to low affinity sites (Ka = 1 x 10(6) M-1). [125I]Iodo-GnRH is also inactivated during incubation with pituitary plasma membrane preparations. Two superactive analongs of GnRH, substituted in positions 6 and 10, were used as the labeled ligand to overcome these problems. Both analogs bound to the same high affinity sites as GnRH on bovine pituitary plasma membranes, though the affinity of the analogs was higher than that of the natural decapeptide (Ka = 2.0 x 10(9), 6.0 x 10(9), and 3.0 x 10(8) M-1 for [D-Ser(TBu)6]des-Gly10-GnRH ethylamide, [D-Ala6]des-Gly10-GnRH ethylamide, and GnRH, respectively. The labeled analogs bound to a single class of high affinity sites with less than 15% of the specific binding being to low affinity sites (Ka approximately equal to 1 x 10(6) M-1). The labeled analogs were not inactivated during incubation with the pituitary membrane preparations. Using the analogs as tracer, a single class of high affinity sites (K1 = 4.0 x 10(9) M-1) was also demonstrated on crude 10,800 x g rat pituitary membrane preparations. Use of these analogs as both the labeled and unlabeled ligand offers substantial advantages over GnRH for investigation of GnRH receptors, allowing accurate determination of changes in their numbers and affinities under various physiological conditions.

The substantial first impact of bottom fishing on rare biodiversity hotspots: a dilemma for evidence-based conservation.

PubMed

Cook, Robert; Fariñas-Franco, Jose M; Gell, Fiona R; Holt, Rohan H F; Holt, Terry; Lindenbaum, Charles; Porter, Joanne S; Seed, Ray; Skates, Lucie R; Stringell, Thomas B; Sanderson, William G

2013-01-01

This study describes the impact of the first passage of two types of bottom-towed fishing gear on rare protected shellfish-reefs formed by the horse mussel Modiolus modiolus (L.). One of the study sites was trawled and the other was scallop-dredged. Divers collected HD video imagery of epifauna from quadrats at the two study sites and directed infaunal samples from one site. The total number of epifaunal organisms was significantly reduced following a single pass of a trawl (90%) or scallop dredge (59%), as was the diversity of the associated community and the total number of M. modiolus at the trawled site. At both sites declines in anthozoans, hydrozoans, bivalves, echinoderms and ascidians accounted for most of the change. A year later, no recovery was evident at the trawled site and significantly fewer infaunal taxa (polychaetes, malacostracans, bivalves and ophuroids) were recorded in the trawl track. The severity of the two types of impact reflected the undisturbed status of the habitats compared to previous studies. As a 'priority habitat' the nature of the impacts described on M. modiolus communities are important to the development of conservation management policy and indicators of condition in Marine Protected Areas (EU Habitats Directive) as well as indicators of 'Good Environmental Status' under the European Union Marine Strategy Framework Directive. Conservation managers are under pressure to support decisions with good quality evidence. Elsewhere, indirect studies have shown declines of M. modiolus biogenic communities in fishing grounds. However, given the protected status of the rare habitat, premeditated demonstration of direct impact is unethical or illegal in Marine Protected Areas. This study therefore provides a unique opportunity to investigate the impact from fishing gear whilst at the same time reflecting on the dilemma of evidence-based conservation management.

Occurrence of organic wastewater compounds in drinking water, wastewater effluent, and the Big Sioux River in or near Sioux Falls, South Dakota, 2001-2004

USGS Publications Warehouse

Sando, Steven K.; Furlong, Edward T.; Gray, James L.; Meyer, Michael T.

2006-01-01

The U.S. Geological Survey (USGS) in cooperation with the city of Sioux Falls conducted several rounds of sampling to determine the occurrence of organic wastewater compounds (OWCs) in the city of Sioux Falls drinking water and waste-water effluent, and the Big Sioux River in or near Sioux Falls during August 2001 through May 2004. Water samples were collected during both base-flow and storm-runoff conditions. Water samples were collected at 8 sites, which included 4 sites upstream from the wastewater treatment plant (WWTP) discharge, 2 sites downstream from the WWTP discharge, 1 finished drinking-water site, and 1 WWTP effluent (WWE) site. A total of 125 different OWCs were analyzed for in this study using five different analytical methods. Analyses for OWCs were performed at USGS laboratories that are developing and/or refining small-concentration (less than 1 microgram per liter (ug/L)) analytical methods. The OWCs were classified into six compound classes: human pharmaceutical compounds (HPCs); human and veterinary antibiotic compounds (HVACs); major agricultural herbicides (MAHs); household, industrial,and minor agricultural compounds (HIACs); polyaromatic hydrocarbons (PAHs); and sterol compounds (SCs). Some of the compounds in the HPC, MAH, HIAC, and PAH classes are suspected of being endocrine-disrupting compounds (EDCs). Of the 125 different OWCs analyzed for in this study, 81 OWCs had one or more detections in environmental samples reported by the laboratories, and of those 81 OWCs, 63 had acceptable analytical method performance, were detected at concentrations greater than the study reporting levels, and were included in analyses and discussion related to occurrence of OWCs in drinking water, wastewater effluent, and the Big Sioux River. OWCs in all compound classes were detected in water samples from sampling sites in the Sioux Falls area. For the five sampling periods when samples were collected from the Sioux Falls finished drinking water, only one OWC was detected at a concentration greater than the study reporting level (metolachlor; 0.0040 ug/L). During base-flow conditions, Big Sioux River sites upstream from the WWTP discharge had OWC contributions that primarily were from nonpoint animal or crop agriculture sources or had OWC concentrations that were minimal. The influence of the WWTP discharge on OWCs at downstream river sites during base-flow conditions ranged from minimal influence to substantial influence depending on the sampling period. During runoff conditions, OWCs at sites upstream from the WWTP discharge probably were primarily contributed by nonpoint animal and/or crop agriculture sources and possibly by stormwater runoff from nearby roads. OWCs at sites downstream from the WWTP discharge probably were contributed by sources other than the WWTP effluent discharge, such as stormwater runoff from urban and/or agriculture areas and/or resuspension of OWCs adsorbed to sediment deposited in the Big Sioux River. OWC loads generally were substantially smaller for upstream sites than downstream sites during both base-flow and runoff conditions.discharge had OWC contributions that primarily were from nonpoint animal or crop agriculture sources or had OWC concentrations that were minimal. The influence of the WWTP discharge on OWCs at downstream river sites during base-flow conditions ranged from minimal influence to substantial influence depending on the sampling period. During runoff conditions, OWCs at sites upstream from the WWTP discharge probably were primarily contributed by nonpoint animal and/or crop agriculture sources and possibly by stormwater runoff from nearby roads. OWCs at sites downstream from the WWTP discharge probably were contributed by sources other than the WWTP effluent discharge, such as stormwater runoff from urban and/or agriculture areas and/or resuspension of OWCs adsorbed to sediment deposited in the Big Sioux River. OWC loads generally were substantially smaller for

Estimating bioaccessibility of trace elements in particles suspended in the Athabasca River using sequential extraction.

PubMed

Javed, Muhammad Babar; Shotyk, William

2018-05-10

Employing protocols developed for polar snow and ice, water samples were collected upstream, midstream and downstream of open pit bitumen mines and upgraders along the Lower Athabasca River (AR). The purpose was to: i) estimate the bioaccessibility of trace elements associated with particulate matter in the AR using sequential extraction, and ii) determine whether their forms have been measurably impacted by industrial activities. Of the trace metals known to be enriched in bitumen (V, Ni, Mo and Re), a substantial proportion of V (78-93%) and Ni (35-81%) was found in the residual fraction representing stable minerals. In contrast, Mo and Re were partitioned mainly into more reactive forms (water soluble, acid extractable, reducible and oxidisable). Comparing the non-residual fractions in upstream versus downstream sites, only water soluble Re was significantly (P = 0.005) greater downstream of industry. In respect to the potentially toxic chalcophile elements (Cu, Pb and Tl), no measurable change was observed in Cu and Pb distribution in upstream versus downstream sites. Only residual Tl was found at upstream and midstream sites, whereas a significant proportion of Tl was also present in the reducible fraction in downstream sites. Overall, a greater proportion of trace metals in the residual fraction at midstream sites appears to be due to inputs of atmospheric dust, clearly evident in microscopic images: energy dispersive spectroscopy and x-ray diffraction analyses showed that these particles were predominantly silicates, which are assumed to have limited bioaccessibility. Copyright © 2018 Elsevier Ltd. All rights reserved.

3,4-Methylenedioxymethamphetamine and 3,4-methylenedioxyamphetamine destroy serotonin terminals in rat brain: quantification of neurodegeneration by measurement of (/sup 3/H)paroxetine-labeled serotonin uptake sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Battaglia, G.; Yeh, S.Y.; O'Hearn, E.

1987-09-01

This study examines the effects of repeated systemic administration (20 mg/kg s.c., twice daily for 4 days) of 3,4-methylenedioxymethamphetamine (MDMA) and 3,4-methylenedioxyamphetamine (MDA) on levels of brain monoamines, their metabolites and on the density of monoamine uptake sites in various regions of rat brain. Marked reductions (30-60%) in the concentration of 5-hydroxyindoleacetic acid were observed in cerebral cortex, hippocampus, striatum, hypothalamus and midbrain at 2 weeks after a 4-day treatment regimen of MDMA or MDA; less consistent reductions in serotonin (5-HT) content were observed in these brain regions. In addition, both MDMA and MDA caused comparable and substantial reductions (50-75%)more » in the density of (/sup 3/H)paroxetine-labeled 5-HT uptake sites in all brain regions examined. In contrast, neither MDMA nor MDA caused any widespread or long-term changes in the content of the catecholaminergic markers (i.e., norepinephrine, dopamine, 3,4 dihydroxyphenylacetic acid and homovanillic acid) or in the number of (/sup 3/H)mazindol-labeled norepinephrine or dopamine uptake sites in the brain regions examined. These data demonstrate that MDMA and MDA cause long-lasting neurotoxic effects with respect to both the functional and structural integrity of serotonergic neurons in brain. Furthermore, our measurement of reductions in the density of 5-HT uptake sites provides a means for quantification of the neurodegenerative effects of MDMA and MDA on presynaptic 5-HT terminals.« less

Octenidine hydrochloride for the care of central venous catheter insertion sites in severely immunocompromised patients.

PubMed

Tietz, Andreas; Frei, Reno; Dangel, Marc; Bolliger, Dora; Passweg, Jakob R; Gratwohl, Alois; Widmer, Andreas E

2005-08-01

To determine the efficacy and tolerability of octenidine hydrochloride, a non-alcoholic skin antiseptic, for the care of central venous catheter (CVC) insertion sites. Prospective, observational study. Bone marrow transplantation unit of a university hospital. All consecutive patients with a nontunneled CVC were enrolled prospectively after informed consent. Octenidine hydrochloride (0.1%) was applied for disinfection at the CVC insertion site during dressing changes. The following cultures were performed weekly as well as at the occurrence of any systemic inflammatory response syndrome criteria: cultures of the skin surrounding the CVC entry site, cultures of the three-way hub connected to the CVC, blood cultures, and cultures of the CVC tip on removal. Enhanced microbiological methods (skin swabs of a 24-cm2 standardized area, roll plate, and sonication of catheter tips) were applied. One hundred thirty-five CVCs were inserted in 62 patients during the study period and remained for a mean period of 19.1 days, corresponding to 2,462 catheter-days. Bacterial density at the insertion site declined substantially over time, and most cultures became negative 2 weeks after insertion. Only 6 patients had a documented catheter-related bloodstream infection. The incidence density was 2.39 catheter infections per 1,000 catheter-days. No side effects were noted with application of the antiseptic. Disinfection with a skin antiseptic that contains octenidine hydrochloride is highly active and well tolerated. It leads to a decrease in skin colonization over time and may be a new option for CVC care.

Convergence of agricultural intensification and climate change in the midwestern United States: Implications for soil and water conservation

USDA-ARS?s Scientific Manuscript database

Society faces substantial challenges to expand food production while adapting to climatic changes and ensuring ecosystem services are maintained. A convergence of these issues is occurring in the Midwestern United States, i.e., the ‘cornbelt’ region that provides substantial grain supplies to world ...

The future of terrestrial mammals in the Mediterranean basin under climate change

PubMed Central

Maiorano, Luigi; Falcucci, Alessandra; Zimmermann, Niklaus E.; Psomas, Achilleas; Pottier, Julien; Baisero, Daniele; Rondinini, Carlo; Guisan, Antoine; Boitani, Luigi

2011-01-01

The Mediterranean basin is considered a hotspot of biological diversity with a long history of modification of natural ecosystems by human activities, and is one of the regions that will face extensive changes in climate. For 181 terrestrial mammals (68% of all Mediterranean mammals), we used an ensemble forecasting approach to model the future (approx. 2100) potential distribution under climate change considering five climate change model outputs for two climate scenarios. Overall, a substantial number of Mediterranean mammals will be severely threatened by future climate change, particularly endemic species. Moreover, we found important changes in potential species richness owing to climate change, with some areas (e.g. montane region in central Italy) gaining species, while most of the region will be losing species (mainly Spain and North Africa). Existing protected areas (PAs) will probably be strongly influenced by climate change, with most PAs in Africa, the Middle East and Spain losing a substantial number of species, and those PAs gaining species (e.g. central Italy and southern France) will experience a substantial shift in species composition. PMID:21844047

Spatiotemporal heterogeneity in carbon exchange at a restored peatland in Alberta, Canada

NASA Astrophysics Data System (ADS)

MacDonald, Scott; Strachan, Ian; Strack, Maria

2017-04-01

Boreal peatlands store a substantial portion of Earth's soil carbon, but the commercial peat extraction process upsets this carbon-sink dynamic. A best-practices restoration process has been developed that aims to return the vegetation and ecosystem functions of post-extraction peatlands. This includes the blocking and infilling of ditches, leveling of the peatland surface and re-introduction of vegetation through the moss layer transfer technique. The dynamics of carbon gas exchange in these restored peatlands are still poorly understood. We investigated ecosystem-scale and microscale carbon flux in a recently restored, post-extraction peatland near Seba Beach, Alberta, Canada. Two eddy covariance (EC) towers continuously measured CO2 and CH4 fluxes in hydrologically distinct parts of the peatland site. Here, we report on growing season measurements made during the fourth year following extraction. Regular static chamber measurements during June-August 2016 were also taken to study gas fluxes across an infilled drainage ditch on the site. Results suggest that if the peatland restoration process successfully returns high water table position, strong carbon uptake may be attained within several years of restoration. However, differences in peatland topography resulted spatial heterogeneity in carbon dynamics at this restored site. A gradient of revegetation success and attendant carbon-flux dynamics were observed, with much stronger net uptake of CO2 and substantial CH4 efflux measured at the tower with higher vegetation cover. Revegetation elsewhere was much sparser, and thus low CO2 uptake rates persisted at much of the peatland, though these conditions conversely inhibited substantial CH4 efflux. More broadly, the contrast in flux data between our two EC towers at the site suggests that attention be made to the selection of representative carbon flux values in similar restored peatlands.

Phylogeny, Traits, and Biodiversity of a Neotropical Bat Assemblage: Close Relatives Show Similar Responses to Local Deforestation.

PubMed

Frank, Hannah K; Frishkoff, Luke O; Mendenhall, Chase D; Daily, Gretchen C; Hadly, Elizabeth A

2017-08-01

If species' evolutionary pasts predetermine their responses to evolutionarily novel stressors, then phylogeny could predict species survival in an increasingly human-dominated world. To understand the role of phylogenetic relatedness in structuring responses to rapid environmental change, we focused on assemblages of Neotropical bats, an ecologically diverse and functionally important group. We examined how taxonomic and phylogenetic diversity shift between tropical forest and farmland. We then explored the importance of evolutionary history by ascertaining whether close relatives share similar responses to environmental change and which species traits might mediate these trends. We analyzed a 5-year data set (5,011 captures) from 18 sites in a countryside landscape in southern Costa Rica using statistical models that account and correct for imperfect detection of species across sites, spatial autocorrelation, and consideration of spatial scale. Taxonomic and phylogenetic diversity decreased with deforestation, and assemblages became more phylogenetically clustered. Species' responses to deforestation were strongly phylogenetically correlated. Body mass and absolute wing loading explained a substantial portion of species variation in species' habitat preferences, likely related to these traits' influence on maneuverability in cluttered forest environments. Our findings highlight the role that evolutionary history plays in determining which species will survive human impacts and the need to consider diversity metrics, evolutionary history, and traits together when making predictions about species persistence for conservation or ecosystem functioning.

[A diachronic study on resettlers' perceptions toward ecological relocation in world heritage site: A case study of Wulingyuan Scenic Area, China].

PubMed

Wang, Kai; Chen, Qin Chang; Li, Zhi Miao

2018-03-01

Perceptions of residents in ecological resettlement area are important for evaluating the implementation effect of ecological relocation and sustainable development of world heritage site. With the residents from three different resettlement communities in Wulingyuan Scenic Area as the research object, we carried out a diachronic study on changes of the resettlers' perceptions of ecological relocation at different times and the main driving factors based on systematic survey data in 2010 and 2016. The results showed that in the year 2010 and 2016, resettlers reacted negatively to the indicators such as "enhancement of employment opportunity", "improvement of education and training opportunity", "enhanced environment in scenic area", "recognizing the identity change 'from rural to non-rural' after relocation". They favored the indicators such as "undermining traditional value", "lack of supervision during the implementation of policies". In 2016, resettlers of different gender, age and average monthly income had substantial different opinions on the economic and psychological impacts of ecological relocation. Education and income level had great impacts on their opinions of ecological relocation policies. Resettlers relocated by the way of investment for developing perceived were more sensitive to the economic impacts. Economic and policy impacts became the dominant driving factors for their general perception of ecological relocation. They pay more attention to employment, children's education opportunity as well as social security system for relocation.

Dynamic chromatin changes associated with de novo centromere formation in maize euchromatin.

PubMed

Su, Handong; Liu, Yalin; Liu, Yong-Xin; Lv, Zhenling; Li, Hongyao; Xie, Shaojun; Gao, Zhi; Pang, Junling; Wang, Xiu-Jie; Lai, Jinsheng; Birchler, James A; Han, Fangpu

2016-12-01

The inheritance and function of centromeres are not strictly dependent on any specific DNA sequence, but involve an epigenetic component in most species. CENH3, a centromere histone H3 variant, is one of the best-described epigenetic factors in centromere identity, but the chromatin features required during centromere formation have not yet been revealed. We previously identified two de novo centromeres on Zea mays (maize) minichromosomes derived from euchromatic sites with high-density gene distributions but low-density transposon distributions. The distribution of gene location and gene expression in these sites indicates that transcriptionally active regions can initiate de novo centromere formation, and CENH3 seeding shows a preference for gene-free regions or regions with no gene expression. The locations of the expressed genes detected were at relatively hypomethylated loci, and the altered gene expression resulted from de novo centromere formation, but not from the additional copy of the minichromosome. The initial overall DNA methylation level of the two de novo regions was at a low level, but increased substantially to that of native centromeres after centromere formation. These results illustrate the dynamic chromatin changes during euchromatin-originated de novo centromere formation, which provides insight into the mechanism of de novo centromere formation and regulation of subsequent consequences. © 2016 The Authors The Plant Journal © 2016 John Wiley & Sons Ltd.

Determination of antigenicity-altering patches on the major surface protein of human influenza A/H3N2 viruses

PubMed Central

Kratsch, Christina; Klingen, Thorsten R.; Mümken, Linda; Steinbrück, Lars; McHardy, Alice C.

2016-01-01

Human influenza viruses are rapidly evolving RNA viruses that cause short-term respiratory infections with substantial morbidity and mortality in annual epidemics. Uncovering the general principles of viral coevolution with human hosts is important for pathogen surveillance and vaccine design. Protein regions are an appropriate model for the interactions between two macromolecules, but the currently used epitope definition for the major antigen of influenza viruses, namely hemagglutinin, is very broad. Here, we combined genetic, evolutionary, antigenic, and structural information to determine the most relevant regions of the hemagglutinin of human influenza A/H3N2 viruses for interaction with human immunoglobulins. We estimated the antigenic weights of amino acid changes at individual sites from hemagglutination inhibition data using antigenic tree inference followed by spatial clustering of antigenicity-altering protein sites on the protein structure. This approach determined six relevant areas (patches) for antigenic variation that had a key role in the past antigenic evolution of the viruses. Previous transitions between successive predominating antigenic types of H3N2 viruses always included amino acid changes in either the first or second antigenic patch. Interestingly, there was only partial overlap between the antigenic patches and the patches under strong positive selection. Therefore, besides alterations of antigenicity, other interactions with the host may shape the evolution of human influenza A/H3N2 viruses. PMID:27774294

Calorie-labelling in catering outlets: acceptability and impacts on food sales.

PubMed

Nikolaou, Charoula K; Lean, Michael E J; Hankey, Catherine R

2014-10-01

Obesity is the biggest challenge facing preventive medicine. Calorie-labelling has been suggested as a way of changing the architecture of an 'obesogenic' environment without limiting consumer choice. This study examined the effect of calorie-labelling on sales of food items at catering outlets on a city-centre university campus. Sales data were collected for two consecutive months in 2013 on three UK university sites (two with calorie-labelling during second month, one control) and analysed with chi-square 'Goodness-of-Fit' tests. A questionnaire seeking consumers' views and use of the calorie-labelling was administered and analysed at group-level with chi-square tests. In intervention vs control sites, total sales of all labelled items fell significantly (-17% vs -2%, p<0.001) for the month with calorie-labelling. Calorie-labelling was associated with substantially reduced sales of high-calorie labelled items, without any compensatory changes in unlabelled alternative items. Among 1166 student- and 646 staff-respondents, 56% reported using the calorie-labels, 97% of them to make lower-calorie choices. More females (63%) than males (40%) reported being influenced by calorie-labels when choosing foods (p=0.01). This study provides evidence, beyond that from single-meal exposures, for the acceptability of meal calorie-labelling and its potential as an effective low-cost anti-obesity measure. Copyright © 2014 Elsevier Inc. All rights reserved.

Hybrid Quantum/Classical Molecular Dynamics Simulations of the Proton Transfer Reactions Catalyzed by Ketosteroid Isomerase: Analysis of Hydrogen Bonding, Conformational Motions, and Electrostatics

PubMed Central

Chakravorty, Dhruva K.; Soudackov, Alexander V.; Hammes-Schiffer, Sharon

2009-01-01

Hybrid quantum/classical molecular dynamics simulations of the two proton transfer reactions catalyzed by ketosteroid isomerase are presented. The potential energy surfaces for the proton transfer reactions are described with the empirical valence bond method. Nuclear quantum effects of the transferring hydrogen increase the rates by a factor of ~8, and dynamical barrier recrossings decrease the rates by a factor of 3–4. For both proton transfer reactions, the donor-acceptor distance decreases substantially at the transition state. The carboxylate group of the Asp38 side chain, which serves as the proton acceptor and donor in the first and second steps, respectively, rotates significantly between the two proton transfer reactions. The hydrogen bonding interactions within the active site are consistent with the hydrogen bonding of both Asp99 and Tyr14 to the substrate. The simulations suggest that a hydrogen bond between Asp99 and the substrate is present from the beginning of the first proton transfer step, whereas the hydrogen bond between Tyr14 and the substrate is virtually absent in the first part of this step but forms nearly concurrently with the formation of the transition state. Both hydrogen bonds are present throughout the second proton transfer step until partial dissociation of the product. The hydrogen bond between Tyr14 and Tyr55 is present throughout both proton transfer steps. The active site residues are more mobile during the first step than during the second step. The van der Waals interaction energy between the substrate and the enzyme remains virtually constant along the reaction pathway, but the electrostatic interaction energy is significantly stronger for the dienolate intermediate than for the reactant and product. Mobile loop regions distal to the active site exhibit significant structural rearrangements and, in some cases, qualitative changes in the electrostatic potential during the catalytic reaction. These results suggest that relatively small conformational changes of the enzyme active site and substrate strengthen the hydrogen bonds that stabilize the intermediate, thereby facilitating the proton transfer reactions. Moreover, the conformational and electrostatic changes associated with these reactions are not limited to the active site but rather extend throughout the entire enzyme. PMID:19799395

Analysis of stress changes and fault stability related to CO2 injection at the Tomakomai offshore site

NASA Astrophysics Data System (ADS)

Kano, Y.; Funatsu, T.; Nakao, S.; Kusunose, K.; Ishido, T.; Lei, X.; Tosha, T.

2013-12-01

A carbon capture and storage demonstration project is planned at the Tomakomai offshore site, which is located in the southwestern part of Hokkaido, Japan. The project includes geological CO2 storage at a rate of 0.25 Mt/year for three and a half years and a coherent system of capture (from petroleum refineries) and transportation (Ministry of Economy, Trade and Industry, 2012). Two different reservoirs are candidates: one is the Moebetsu formation which is shallow, gently inclined and composed of relatively homogeneous sandstone, and another is the Takinoue T1 formation which is deep, sharply inclined, overpressured and composed of heterogeneous volcanic rocks. Effects of the CO2 injection are expected to be considerably different between these two reservoirs. As part of a safety assessment, Kano et al. (2013) investigated stress changes and corresponding fault stability in the deeper Takinoue T1 formation, based on an estimated initial stress field and numerically-simulated changes in fluid pressure caused by a planned CO2 injection. One of the important features was that the slip tendency becomes maximal near the top of the dipping Takinoue formation which is substantially shallower than the injection depth. This is thought to be due to a combination of the overpressure and heterogeneous structure. In this presentation we will report results of additional analysis and discuss different behaviours between the Takinoue and Moebetsu formations. Sensitivity to uncertain geomechanical properties such as the friction coefficient and the effects of poro-elastic stress development due to changes in fluid pressure and temperature are also discussed. This research was partly funded and supported by the Ministry of Economy, Trade and Industry. We would like to acknowledge Japan CCS Co., Ltd., for providing their survey and research data on the Tomakomai site. References: Ministry of Economy, Trade and Industry, 2012. CCS demonstration project at the Tomakomai site (in Japanese). http://www.meti.go.jp/information/downloadfiles/c120208a02j.pdf Kano, Y., Funatsu, T., Nakao, S., Kusunose, K., Ishido, T., Lei, X.-L., Tosha, T., 2013. Fault stability analysis related to CO2 injection at Tomakomai, Hokkaido, Japan. Proc. GHGT-11, Kyoto, Japan, 18-22 November. Energy Procedia 37, 4946-4953.

Potential environmental contaminant risks to avian species at important bird areas in the northeastern United States

USGS Publications Warehouse

Rattner, B.A.; Ackerson, B.K.

2008-01-01

Environmental contaminants can have profound effects on birds, acting from the molecular through population levels of biological organization. An analysis of potential contaminant threats was undertaken at 52 Important Bird Areas (IBAs) within the northeastern Atlantic coast drainage. Using geographic information system methodology, data layers describing or integrating contamination (impaired waters, fish or wildlife consumption advisories, toxic release inventory sites, and estimates of pesticide use) were overlaid on buffered IBA boundaries, and the relative threat at each site was ranked. The most threatened sites include Jefferson National Forest (NF), Stewart B. McKinney National Wildlife Refuge (NWR), Great Dismal Swamp NWR, Blue Ridge Parkway, Shenandoah National Park (NP), Adirondack Park, Edwin B. Forsythe NWR, George Washington NF, Green Mountain NF, Long Island Piping Plover Beaches, and Merrymeeting Bay. These sites exhibited moderate to high percentages of impaired waters and had fish consumption advisories related to mercury and polychlorinated biphenyls, and were located in counties with substantial pesticide use. Endangered, threatened and Watch List bird species are present at these sites. The Contaminant Exposure and Effects--Terrestrial Vertebrates database was searched within buffered IBA boundaries, and for a moderate number of sites there was concordance between the perceived risk and contaminant exposure. Several of the IBAs with apparently substantial contaminant threats had no avian ecotoxicological data (e.g., George Washington NF, Shenandoah NP). Based upon this screening level risk assessment, contaminant biomonitoring is warranted at such sites, and data generated from these efforts should foster natural resource management activities.

Diffusional correlations among multiple active sites in a single enzyme.

PubMed

Echeverria, Carlos; Kapral, Raymond

2014-04-07

Simulations of the enzymatic dynamics of a model enzyme containing multiple substrate binding sites indicate the existence of diffusional correlations in the chemical reactivity of the active sites. A coarse-grain, particle-based, mesoscopic description of the system, comprising the enzyme, the substrate, the product and solvent, is constructed to study these effects. The reactive and non-reactive dynamics is followed using a hybrid scheme that combines molecular dynamics for the enzyme, substrate and product molecules with multiparticle collision dynamics for the solvent. It is found that the reactivity of an individual active site in the multiple-active-site enzyme is reduced substantially, and this effect is analyzed and attributed to diffusive competition for the substrate among the different active sites in the enzyme.

Significance of headwater streams and perennial springs in ecological monitoring in Shenandoah National Park

USGS Publications Warehouse

Snyder, Craig D.; Webb, James R.; Young, John A.; Johnson, Zane B.

2013-01-01

Shenandoah National Park has been monitoring water chemistry and benthic macroinvertebrates in stream ecosystems since 1979. These monitoring efforts were designed to assess the status and trends in stream condition associated with atmospheric deposition (acid rain) and changes in forest health due to gypsy moth infestations. The primary objective of the present research was to determine whether the current long-term macroinvertebrate and water-quality monitoring program in Shenandoah National Park was failing to capture important information on the status and trends in stream condition by not sufficiently representing smaller, headwater streams. The current benthic-macroinvertebrate and water-chemistry sampling designs do not include routine collection of data from streams with contributing watershed areas smaller than 100 hectares, even though these small streams represent the overwhelming proportion of total stream length in the park. In this study, we sampled headwater sites, including headwater stream reaches (contributing watershed area approximately 100 hectares (ha) and perennial springs, in the park for aquatic macroinvertebrates and water chemistry and compared the results with current and historical data collected at long-term ecological monitoring (LTEM) sites on larger streams routinely sampled as part of ongoing monitoring efforts. The larger purpose of the study was to inform ongoing efforts by park managers to evaluate the effectiveness and efficiency of the current aquatic monitoring program in light of other potential stressors (for example, climate change) and limited resources. Our results revealed several important findings that could influence management decisions regarding long-term monitoring of park streams. First, we found that biological indicators of stream condition at headwater sites and perennial springs generally were more indicative of lower habitat quality and were more spatially variable than those observed at sites on routinely monitored larger streams. We hypothesized that poorer stream condition observed in smaller streams was due to stream drying that occurs more frequently in headwater areas. We also found that biological and water-chemistry measures responded differently to landscape drivers. Variation in most biological endpoints was driven primarily by stream size and was only secondarily associated with bedrock geology. In contrast, water chemistry showed essentially the opposite pattern, with underlying geology explaining much of the variation and stream size being of secondary importance. Therefore, expanding the LTEM program to include headwater areas would yield substantially different biological information, whereas broad inferences regarding spatial patterns in water chemistry would probably not change. Although significant differences in community composition were observed among streams of different sizes, no taxa were unique to headwater sites. All taxa collected at the 45 headwater sites also had been collected at one or more LTEM sites during one or more years. This observation indicates that headwater sites in the park may be structured by biotic nestedness; consequently, focusing management efforts on preserving the species pool at the larger LTEM sites would likely result in the protection of most taxa parkwide. Finally, linkages (correlations) between water chemistry and biological measures of stream condition were signficantly stronger when assessed at the LTEM sites than when assessed at the springs or headwater sites, indicating that conditions at downstream sites may be better indicators of water-quality trends.

Geomechanical Modeling for Improved CO2 Storage Security

NASA Astrophysics Data System (ADS)

Rutqvist, J.; Rinaldi, A. P.; Cappa, F.; Jeanne, P.; Mazzoldi, A.; Urpi, L.; Vilarrasa, V.; Guglielmi, Y.

2017-12-01

This presentation summarizes recent modeling studies on geomechanical aspects related to Geologic Carbon Sequestration (GCS,) including modeling potential fault reactivation, seismicity and CO2 leakage. The model simulations demonstrates that the potential for fault reactivation and the resulting seismic magnitude as well as the potential for creating a leakage path through overburden sealing layers (caprock) depends on a number of parameters such as fault orientation, stress field, and rock properties. The model simulations further demonstrate that seismic events large enough to be felt by humans requires brittle fault properties as well as continuous fault permeability allowing for the pressure to be distributed over a large fault patch to be ruptured at once. Heterogeneous fault properties, which are commonly encountered in faults intersecting multilayered shale/sandstone sequences, effectively reduce the likelihood of inducing felt seismicity and also effectively impede upward CO2 leakage. Site specific model simulations of the In Salah CO2 storage site showed that deep fractured zone responses and associated seismicity occurred in the brittle fractured sandstone reservoir, but at a very substantial reservoir overpressure close to the magnitude of the least principal stress. It is suggested that coupled geomechanical modeling be used to guide the site selection and assisting in identification of locations most prone to unwanted and damaging geomechanical changes, and to evaluate potential consequence of such unwanted geomechanical changes. The geomechanical modeling can be used to better estimate the maximum sustainable injection rate or reservoir pressure and thereby provide for improved CO2 storage security. Whether damaging geomechanical changes could actually occur very much depends on the local stress field and local reservoir properties such the presence of ductile rock and faults (which can aseismically accommodate for the stress and strain induced by the injection) or, on the contrary, the presence of more brittle faults that, if critically stressed for shear, might be more prone to induce felt seismicity.

Predicting the natural flow regime: Models for assessing hydrological alteration in streams

USGS Publications Warehouse

Carlisle, D.M.; Falcone, J.; Wolock, D.M.; Meador, M.R.; Norris, R.H.

2009-01-01

Understanding the extent to which natural streamflow characteristics have been altered is an important consideration for ecological assessments of streams. Assessing hydrologic condition requires that we quantify the attributes of the flow regime that would be expected in the absence of anthropogenic modifications. The objective of this study was to evaluate whether selected streamflow characteristics could be predicted at regional and national scales using geospatial data. Long-term, gaged river basins distributed throughout the contiguous US that had streamflow characteristics representing least disturbed or near pristine conditions were identified. Thirteen metrics of the magnitude, frequency, duration, timing and rate of change of streamflow were calculated using a 20-50 year period of record for each site. We used random forests (RF), a robust statistical modelling approach, to develop models that predicted the value for each streamflow metric using natural watershed characteristics. We compared the performance (i.e. bias and precision) of national- and regional-scale predictive models to that of models based on landscape classifications, including major river basins, ecoregions and hydrologic landscape regions (HLR). For all hydrologic metrics, landscape stratification models produced estimates that were less biased and more precise than a null model that accounted for no natural variability. Predictive models at the national and regional scale performed equally well, and substantially improved predictions of all hydrologic metrics relative to landscape stratification models. Prediction error rates ranged from 15 to 40%, but were 25% for most metrics. We selected three gaged, non-reference sites to illustrate how predictive models could be used to assess hydrologic condition. These examples show how the models accurately estimate predisturbance conditions and are sensitive to changes in streamflow variability associated with long-term land-use change. We also demonstrate how the models can be applied to predict expected natural flow characteristics at ungaged sites. ?? 2009 John Wiley & Sons, Ltd.

Land-use history as a guide for forest conservation and management.

PubMed

Whitlock, Cathy; Colombaroli, Daniele; Conedera, Marco; Tinner, Willy

2018-02-01

Conservation efforts to protect forested landscapes are challenged by climate projections that suggest substantial restructuring of vegetation and disturbance regimes in the future. In this regard, paleoecological records that describe ecosystem responses to past variations in climate, fire, and human activity offer critical information for assessing present landscape conditions and future landscape vulnerability. We illustrate this point drawing on 8 sites in the northwestern United States, New Zealand, Patagonia, and central and southern Europe that have undergone different levels of climate and land-use change. These sites fall along a gradient of landscape conditions that range from nearly pristine (i.e., vegetation and disturbance shaped primarily by past climate and biophysical constraints) to highly altered (i.e., landscapes that have been intensely modified by past human activity). Position on this gradient has implications for understanding the role of natural and anthropogenic disturbance in shaping ecosystem dynamics and assessments of present biodiversity, including recognizing missing or overrepresented species. Dramatic vegetation reorganization occurred at all study sites as a result of postglacial climate variations. In nearly pristine landscapes, such as those in Yellowstone National Park, climate has remained the primary driver of ecosystem change up to the present day. In Europe, natural vegetation-climate-fire linkages were broken 6000-8000 years ago with the onset of Neolithic farming, and in New Zealand, natural linkages were first lost about 700 years ago with arrival of the Maori people. In the U.S. Northwest and Patagonia, the greatest landscape alteration occurred in the last 150 years with Euro-American settlement. Paleoecology is sometimes the best and only tool for evaluating the degree of landscape alteration and the extent to which landscapes retain natural components. Information on landscape-level history thus helps assess current ecological change, clarify management objectives, and define conservation strategies that seek to protect both natural and cultural elements. © 2017 The Authors. Conservation Biology published by Wiley Periodicals, Inc. on behalf of Society for Conservation Biology.

Trends in precipitation and stream-water chemistry in the northeastern United States, water years 1984-96

USGS Publications Warehouse

Clow, D.W.; Mast, M. Alisa

1999-01-01

Trends in precipitation and stream-water chemistry during water years 1984-96 were examined at eight precipitation monitoring sites and five nearby streams operated by the U.S. Geological Survey in the northeastern United States. The statistical analyses indicate the following: 1)Stream-water sulfate (SO4) concentrations decreased at seven of eight precipitation monitoring sites and in each of five streams. 2)Calcium plus magnesium (Ca + Mg) concentrations decreased at seven of eight precipitation monitoring sites and in three of five streams. 3)Precipitation acidity decreased at five of eight precipitation monitoring sites, but alkalinity increased in only one stream. These results indicate that decreases in atmospheric deposition of SO4 have resulted in decreased precipitation acidity. The chemical response of stream water to changes in precipitation chemistry was complex. Decreases in stream-water SO4 concentrations generally matched decreases of precipitation SO4. In stream water, increases in alkalinity were uncommon because decreases in SO4 concentrations often were accompanied by decreases in Ca + Mg concentrations. The decreases in Ca + Mg concentrations might be related to depletion of base cations from soil caused by long-term exposure to acidic deposition. Increases in streamwater alkalinity might not occur until rates of acidic deposition are reduced to substantially less than the rate of cation resupply by weathering and atmospheric deposition. In areas where forests are aggrading, recovery of stream-water alkalinity will be delayed further because of the acidifying effect of biomass accumulation.

The Sites of Evaporation within Leaves.

PubMed

Buckley, Thomas N; John, Grace P; Scoffoni, Christine; Sack, Lawren

2017-03-01

The sites of evaporation within leaves are unknown, but they have drawn attention for decades due to their perceived implications for many factors, including patterns of leaf isotopic enrichment, the maintenance of mesophyll water status, stomatal regulation, and the interpretation of measured stomatal and leaf hydraulic conductances. We used a spatially explicit model of coupled water and heat transport outside the xylem, MOFLO 2.0, to map the distribution of net evaporation across leaf tissues in relation to anatomy and environmental parameters. Our results corroborate earlier predictions that most evaporation occurs from the epidermis at low light and moderate humidity but that the mesophyll contributes substantially when the leaf center is warmed by light absorption, and more so under high humidity. We also found that the bundle sheath provides a significant minority of evaporation (15% in darkness and 18% in high light), that the vertical center of amphistomatous leaves supports net condensation, and that vertical temperature gradients caused by light absorption vary over 10-fold across species, reaching 0.3°C. We show that several hypotheses that depend on the evaporating sites require revision in light of our findings, including that experimental measurements of stomatal and hydraulic conductances should be affected directly by changes in the location of the evaporating sites. We propose a new conceptual model that accounts for mixed-phase water transport outside the xylem. These conclusions have far-reaching implications for inferences in leaf hydraulics, gas exchange, water use, and isotope physiology. © 2017 American Society of Plant Biologists. All Rights Reserved.

Field scale DNAPLs transport under nonequilibrium sorption conditions.

PubMed

Ahmed, Ashraf A; Chen, Daoyi

2006-01-01

The purpose of this work is to study the desorption of dense nonaqueous phase liquids (DNAPLs), TCE in particular, from solid particles in field scale heterogeneous aquifers upon their remediation. A computer program, capable of simulating the fate and transport of NAPLs in porous media, has been developed to work under nonequilibrium sorption conditions. The model has been applied to a field scale site at Hill Air Force Base, Utah, which has been contaminated by DNAPLs. The simulated domain was 155 ft (47.25 m) long, 60 ft (18.29 m) wide, and 15.5 ft (4.72 m) thick. This thickness represents only the saturated zone of the aquifer. Changes in permeability, grain size distribution, and sorptive properties throughout the site have been incorporated into the model. Immediately after the aquifer cleanup, the DNAPL concentration in the aqueous phase was assumed to be zero, and this was considered the start-off time for the simulation. Results show that, with an increase in time, the TCE diffused out of the solid particles, forming a plume. The rate of contaminant diffusion was observed to be very fast at the start, followed by a very slow stage, with a number of years required for substantial desorption of the contaminant from the solid particles. There were local variations in contaminant concentration in the fluid phase across the site due to aquifer heterogeneity. A comparison between numerical results and water samples taken from the site after the end of the cleanup operation is also presented.

The Sites of Evaporation within Leaves1[OPEN

PubMed Central

Sack, Lawren

2017-01-01

The sites of evaporation within leaves are unknown, but they have drawn attention for decades due to their perceived implications for many factors, including patterns of leaf isotopic enrichment, the maintenance of mesophyll water status, stomatal regulation, and the interpretation of measured stomatal and leaf hydraulic conductances. We used a spatially explicit model of coupled water and heat transport outside the xylem, MOFLO 2.0, to map the distribution of net evaporation across leaf tissues in relation to anatomy and environmental parameters. Our results corroborate earlier predictions that most evaporation occurs from the epidermis at low light and moderate humidity but that the mesophyll contributes substantially when the leaf center is warmed by light absorption, and more so under high humidity. We also found that the bundle sheath provides a significant minority of evaporation (15% in darkness and 18% in high light), that the vertical center of amphistomatous leaves supports net condensation, and that vertical temperature gradients caused by light absorption vary over 10-fold across species, reaching 0.3°C. We show that several hypotheses that depend on the evaporating sites require revision in light of our findings, including that experimental measurements of stomatal and hydraulic conductances should be affected directly by changes in the location of the evaporating sites. We propose a new conceptual model that accounts for mixed-phase water transport outside the xylem. These conclusions have far-reaching implications for inferences in leaf hydraulics, gas exchange, water use, and isotope physiology. PMID:28153921

Onwards and upwards in the Caucasus - A multidisciplinary approach to understanding the lifeways of the earliest modern humans in Armenia

NASA Astrophysics Data System (ADS)

Kandel, Andrew; Gasparyan, Boris; Bruch, Angela; Deckers, Katleen; Nahapetyan, Samvel; Weissbrod, Lior

2013-04-01

The Armenian Highlands have functioned as a gateway with regards to the peopling of the Southern Caucasus. Most importantly, changes in climate have long controlled access to this remote and often inhospitable mountainous region. Here we present the results of the multidisciplinary study of Aghitu-3 Cave which brings together researchers from the fields of archaeology, geology and geomorphology, zooarchaeology, paleobotany and paleoclimate. By integrating these areas of study, we have reconstructed the lifeways of the earliest behaviorally (and presumably anatomically) modern humans who settled Southern Armenia about 35,000 (cal BP) years ago and placed this occupational sequence within a framework of environmental change. These first Upper Paleolithic inhabitants of Armenia made temporary use of this basalt cave located along the Vorotan River corridor at an altitude of 1601 m during seasonal forays into the highlands. The infrequent use of this site as a hunting camp comes to an end at about 31,000 cal BP. The next package of sediment shows little evidence of human occupation, although fauna seem to flourish during the time between 31-29,000 cal BP. Following this phase of depopulation, the intensity of occupation increases substantially after 29,000 cal BP. Human presence is amply documented in the numerous stone artifacts, faunal remains and fireplaces that cover the site. These changes in population movement are echoed in the sequence of sediments preserved in the cave and can be correlated with the fluctuating climatic conditions associated with the late Pleistocene.

Local adaptations and climate change: converging sensitivity of bud break in black spruce provenances.

PubMed

Rossi, Sergio

2015-07-01

Species with transcontinental distribution or spread over wide geographical regions develop populations with growth traits genetically adapted to the local climate. The aim of this study was to investigate the ecotypic sensitivity of bud break, a strong adaptive trait, to a changing environment. Six phenological phases of bud break were monitored daily on black spruce [Picea mariana (Mill.) BSP] seedlings submitted to different temperatures (12, 16 and 20 °C) and photoperiods (14, 18 and 22 h). Six provenances were tested in growth chambers, produced from seeds collected along the whole latitudinal range of the closed boreal forest in Quebec, Canada. Bud break lasted 13.3 days on average and occurred earlier in seedlings from colder sites. The annual temperature of the sites suitably tracked the clinal variation among ecotypes, providing a clear biological explanation for the environmental signal driving the adaptive divergence of populations to the local climate. Increasing temperature induced an earlier bud break according to a non-linear pattern with greater advancements observed between 12 and 16 °C. Photoperiod was significant, but sensitivity analysis indicated that its effect on bud break was marginal with respect to temperature. No interaction of provenance × treatment was observed, demonstrating an ecotypic convergence of the responses to both factors. Changes in the growing conditions could substantially modify the synchronization between bud phenology and climate, thus exposing the developing meristems of black spruce to frost damage. However, similar advancements of bud break could be expected in the different ecotypes subjected to warmer temperatures or longer day lengths.

A 6900-year history of landscape modification by humans in lowland Amazonia

NASA Astrophysics Data System (ADS)

Bush, M. B.; Correa-Metrio, A.; McMichael, C. H.; Sully, S.; Shadik, C. R.; Valencia, B. G.; Guilderson, T.; Steinitz-Kannan, M.; Overpeck, J. T.

2016-06-01

A sedimentary record from the Peruvian Amazon provided evidence of climate and vegetation change for the last 6900 years. Piston cores collected from the center of Lake Sauce, a 20 m deep lake at 600 m elevation, were 19.7 m in length. The fossil pollen record showed a continuously forested catchment within the period of the record, although substantial changes in forest composition were apparent. Fossil charcoal, found throughout the record, was probably associated with humans setting fires. Two fires, at c. 6700 cal BP and 4270 cal BP, appear to have been stand-replacing events possibly associated with megadroughts. The fire event at 4270 cal BP followed a drought that caused lowered lake levels for several centuries. The successional trajectories of forest recovery following these large fires were prolonged by smaller fire events. Fossil pollen of Zea mays (cultivated maize) provided evidence of agricultural activity at the site since c. 6320 cal BP. About 5150 years ago, the lake deepened and started to deposit laminated sediments. Maize agriculture reached a peak of intensity between c. 3380 and 700 cal BP. Fossil diatom data provided a proxy for lake nutrient status and productivity, both of which peaked during the period of maize cultivation. A marked change in land use was evident after c. 700 cal BP when maize agriculture was apparently abandoned at this site. Iriartea, a hyperdominant of riparian settings in western Amazonia, increased in abundance within the last 1100 years, but declined markedly at c. 1070 cal BP and again between c. 80 and -10 cal BP.

Sequential changes in chromatin structure during transcriptional activation in the beta globin LCR and its target gene.

PubMed

Kim, Kihoon; Kim, AeRi

2010-09-01

Chromatin structure is modulated during transcriptional activation. The changes include the association of transcriptional activators, formation of hypersensitive sites and covalent modifications of histones. To understand the order of the various changes accompanying transcriptional activation, we analyzed the mouse beta globin gene, which is transcriptionally inducible in erythroid MEL cells over a time course of HMBA treatment. Transcription of the globin genes requires the locus control region (LCR) consisting of several hypersensitive sites (HSs). Erythroid specific transcriptional activators such as NF-E2, GATA-1, TAL1 and EKLF were associated with the LCR in the uninduced state before transcriptional activation. The HSs of the LCR were formed in this state as revealed by high sensitivity to DNase I and MNase attack. However the binding of transcriptional activators and the depletion of histones were observed in the promoter of the beta globin gene only after transcriptional activation. In addition, various covalent histone modifications were sequentially detected in lysine residues of histone H3 during the activation. Acetylation of K9, K36 and K27 was notable in both LCR HSs and gene after induction but before transcriptional initiation. Inactive histone marks such as K9me2, K36me2 and K27me2 were removed coincident with transcriptional initiation in the gene region. Taken together, these results indicate that LCR has a substantially active structure in the uninduced state while transcriptional activation serially adds active marks, including histone modifications, and removes inactive marks in the target gene of the LCR. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

Interannual influence of spring phenological transitions on the water use efficiency of forest ecosystem

NASA Astrophysics Data System (ADS)

Jin, Jiaxin; Wang, Ying

2017-04-01

Climate change has significantly influenced the productivity of terrestrial ecosystems through water cycles. Understanding the phenological regulation mechanisms underlying coupled carbon-water cycles is important for improving ecological assessments and projecting terrestrial ecosystem responses and feedback to climate change. In this study, we present an analysis of the interannual relationships among flux-based spring phenological transitions (referred as photosynthetic onset) and water use efficiency (WUE) in North America and Europe using 166 site-years of data from 22 flux sites, including 10 deciduous broadleaf forest (DBF) and 12 evergreen needleleaf forest (ENF) ecosystems. We found that the WUE responses to variations in spring phenological transitions differed substantially across plant functional types (PFTs) and growth periods. During the early spring (defined as one month from spring onset) in the DBF ecosystem, photosynthetic onset dominated changes in WUE by dominating gross primary production (GPP), with one day of advanced onset increasing the WUE by 0.037 gC kg-1H2O in early spring. For the ENF sites, although advanced photosynthetic onset also significantly promoted GPP, earlier onset did not have a significant positive impact on WUE in early spring because it was not significantly correlated to evapotranspiration (ET), which is a more dominant factor for WUE than GPP across the ENF sites. Statistically significant correlations were not observed between interannual variability in photosynthetic onset and WUE for either the DBF or ENF ecosystems following a prolonged period after photosynthetic onset. For the DBF sites, the interannual variability of photosynthetic onset provided a better explanation of the variations in WUE (ca. 51.4%) compared with climatic factors, although this was only applicable to the early spring. For the ENF sites, photosynthetic onset variations did not provide a better explanation of the interannual WUE variations compared with climatic factors within any growth period. Notably, the negative correlation between the interannual variability of early spring WUE and photosynthetic onset gradually declined from boreal forests (r = -0.73) to subtropical Mediterranean forests (r = 0.35), indicating that the positive effect of earlier spring phenological transitions decreased or even reversed from cold climates to warm climates. This result suggests that the effect of the phenological regulatory mechanism on coupled carbon-water cycles is not only determined by the PFT but also by the habitat climate of an ecosystem. These observed differences between the ENF and DBF ecosystems will likely influence future phenological shifts related to competition for water and other resources in mixed species stands.

Mobile demersal megafauna at common offshore wind turbine foundations in the German Bight (North Sea) two years after deployment - increased production rate of Cancer pagurus.

PubMed

Krone, R; Dederer, G; Kanstinger, P; Krämer, P; Schneider, C; Schmalenbach, I

2017-02-01

Within the next decades the construction of thousands of different types of large wind turbine foundations in the North Sea will substantially increase the amount of habitat available to reef fauna. To gain first insights which effect these substantial changes in habitat structure and diversity might have on faunal stocks settling on hard substrata, we compared the mobile demersal megafauna associated with the common types of wind turbine foundations ('jacket', 'tripod' and 'monopile with scour protections of natural rock') in the southern German Bight, North Sea. Monopiles with scour protection were mostly colonized by typical reef fauna. They were inhabited by an average of about 5000 edible crabs Cancer pagurus (per foundation), which is more than twice as much as found at the foundation types without scour protection. Strong evidence was found that all three foundation types not only function as aggregation sites, but also as nursery grounds for C. pagurus. Assuming equal shares of the three foundation types in future wind farms, we project that about 27% of the local stock of C. pagurus might be produced on site. When, for example, comparing the existing fauna at 1000 ship wrecks and on the autochthonous soft substrate with those which probably will establish at the foundations of 5000 hypothetically realized wind turbines, it becomes clear that the German Bight in the future will provide new artificial reef habitats for another 320% crabs (C. pagurus) and 50% wrasse (Ctenolabrus rupestris) representing substrata-limited mobile demersal hard bottom species. Further research is urgently required in order to evaluate this overspill as it would be an important ecological effect of the recent offshore wind power development. Copyright © 2016 Elsevier Ltd. All rights reserved.

Modelling predicts that tolerance to drought during reproductive development will be required for high yield potential and stability of wheat in Europe

NASA Astrophysics Data System (ADS)

Semenov, Mikhail A.; Stratonovitch, Pierre; Paul, Matthew J.

2017-04-01

Short periods of extreme weather, such as a spell of high temperature or drought during a sensitive stage of development, could result in substantial yield losses due to reduction in grain number and grain size. In a modelling study (Stratonovitch & Semenov 2015), heat tolerance around flowering in wheat was identified as a key trait for increased yield potential in Europe under climate change. Ji et all (Ji et al. 2010) demonstrated cultivar specific responses of yield to drought stress around flowering in wheat. They hypothesised that carbohydrate supply to anthers may be the key in maintaining pollen fertility and grain number in wheat. It was shown in (Nuccio et al. 2015) that genetically modified varieties of maize that increase the concentration of sucrose in ear spikelets, performed better under non-drought and drought conditions in field experiments. The objective of this modelling study was to assess potential benefits of tolerance to drought during reproductive development for wheat yield potential and yield stability across Europe. We used the Sirius wheat model to optimise wheat ideotypes for 2050 (HadGEM2, RCP8.5) climate scenarios at selected European sites. Eight cultivar parameters were optimised to maximise mean yields, including parameters controlling phenology, canopy growth and water limitation. At those sites where water could be limited, ideotypes sensitive to drought produced substantially lower mean yields and higher yield variability compare with tolerant ideotypes. Therefore, tolerance to drought during reproductive development is likely to be required for wheat cultivars optimised for the future climate in Europe in order to achieve high yield potential and yield stability.

Patterns of variation in diversity of the Mississippi river microbiome over 1,300 kilometers

PubMed Central

Payne, Jason T.; Millar, Justin J.; Jackson, Colin R.

2017-01-01

We examined the downriver patterns of variation in taxonomic diversity of the Mississippi River bacterioplankton microbiome along 1,300 river kilometers, or approximately one third the total length of the river. The study section included portions of the Upper, Middle, and Lower Mississippi River, confluences with five tributaries draining distinct sub-basins, river cities, and extended stretches without major inputs to the Mississippi. The composition and proportional abundance of dominant bacterial phyla was distinct for free-living and particle-associated cells, and constant along the entire reach, except for a substantial but transient disturbance near the city of Memphis, Tennessee. At a finer scale of taxonomic resolution (operational taxonomic units, OTUs), however, there were notable patterns in downriver variation in bacterial community alpha diversity (richness within a site) and beta diversity (variation in composition among sites). There was a strong and steady increase downriver in alpha diversity of OTUs on suspended particles, suggesting an increase in particle niche heterogeneity, and/or particle colonization. Relatively large shifts in beta diversity of free-living and particle-associated communities occurred following major tributary confluences and transiently at Memphis, while in long stretches between these points diversity typically varied more gradually. We conclude that the Mississippi River possesses a bacterioplankton microbiome distinct in diversity from other large river microbiomes in the Mississippi River Basin, that at major river confluences or urban point sources its OTU diversity may shift abruptly and substantially, presumably by immigration of distinct external microbiomes, but that where environmental conditions are more stable along the downriver gradient, microbiome diversity tends to vary gradually, presumably by a process of successional change in community composition. PMID:28350888

Temporal variability of carbon and nutrient burial, sediment accretion, and mass accumulation over the past century in a carbonate platform mangrove forest of the Florida Everglades.

USGS Publications Warehouse

Breithaupt, Josh L.; Smoak, Joseph M.; Smith, Thomas J.; Sanders, Christian J.

2014-01-01

The objective of this research was to measure temporal variability in accretion and mass sedimentation rates (including organic carbon (OC), total nitrogen (TN), and total phosphorous (TP)) from the past century in a mangrove forest on the Shark River in Everglades National Park, USA. The 210Pb Constant Rate of Supply model was applied to six soil cores to calculate annual rates over the most recent 10, 50, and 100 year time spans. Our results show that rates integrated over longer timeframes are lower than those for shorter, recent periods of observation. Additionally, the substantial spatial variability between cores over the 10 year period is diminished over the 100 year record, raising two important implications. First, a multiple-decade assessment of soil accretion and OC burial provides a more conservative estimate and is likely to be most relevant for forecasting these rates relative to long-term processes of sea level rise and climate change mitigation. Second, a small number of sampling locations are better able to account for spatial variability over the longer periods than for the shorter periods. The site average 100 year OC burial rate, 123 ± 19 (standard deviation) g m-2yr-1, is low compared with global mangrove values. High TN and TP burial rates in recent decades may lead to increased soil carbon remineralization, contributing to the low carbon burial rates. Finally, the strong correlation between OC burial and accretion across this site signals the substantial contribution of OC to soil building in addition to the ecosystem service of CO2 sequestration.

The role of alpha oscillations for illusory perception

PubMed Central

Lange, Joachim; Keil, Julian; Schnitzler, Alfons; van Dijk, Hanneke; Weisz, Nathan

2014-01-01

Alpha oscillations are a prominent electrophysiological signal measured across a wide range of species and cortical and subcortical sites. Alpha oscillations have been viewed for a long time as an “idling” rhythm, purely reflecting inactive sites. Despite earlier evidence from neurophysiology, awareness that alpha oscillations can substantially influence perception and behavior has grown only recently in cognitive neuroscience. Evidence for an active role of alpha for perception comes mainly from several visual, near-threshold experiments. In the current review, we extend this view by summarizing studies showing how alpha-defined brain states relate to illusory perception, i.e. cases of perceptual reports that are not “objectively” verifiable by distinct stimuli or stimulus features. These studies demonstrate that ongoing or prestimulus alpha oscillations substantially influence the perception of auditory, visual or multisensory illusions. PMID:24931795

Impact and acceptability of self-consent procedures for the school-based human papillomavirus vaccine: a mixed-methods study protocol

PubMed Central

Audrey, Suzanne; Ferrie, Joanne; Evans, Karen; Bell, Michael; Yates, Julie; Roderick, Marion; MacLeod, John; Hickman, Matthew

2018-01-01

Introduction The human papillomavirus (HPV) vaccine, administered in early adolescence, can substantially reduce cervical cancer incidence and mortality. However, lack of written parental consent is a key reason why some young women do not receive the vaccine. The national legal framework allows girls to be vaccinated without parental consent provided they are deemed Gillick competent, but there is some reticence about vaccinating without written parental consent. Self-consent procedures are being implemented in Bristol and South Gloucestershire. This study will examine the implementation, acceptability and impact of these new procedures. Methods and analysis Statistical analyses of routine data from Public Health England and the Child Health Information System will test if there has been an increase in HPV vaccination uptake in two ways: (a) Is there an increase when comparing before and after the change in our intervention sites? and (b) Does the percentage change in our intervention sites differ from comparison sites (similar to our intervention sites in terms of initial HPV uptake, ethnicity and deprivation levels) in England where no such intervention took place and how? For the process evaluation, we will develop a logic model and use questionnaires, observations and audio-recorded interviews with young women, school nurses, school staff and parents to examine the context, implementation of self-consent and response to the new procedures. Ethics and dissemination The University of Bristol Faculty of Health Sciences Research Ethics Committee and the National Health Service Health Research Authority provided approvals for the study. We will produce a report with recommendations about self-consent procedures in conjunction with key stakeholders. At least two papers will be written for publication in peer-reviewed journals and for conference presentations. A summary of results will be shared with participating immunisation nurses, school staff, young people and parents as requested. Trial registration number ISRCTN49086105; Pre-results. PMID:29502095

The Effects of Groundwater-associated Nutrients on Benthic Community Composition in Maunalua Bay, Hawaíi

NASA Astrophysics Data System (ADS)

La Valle, F. F.; Thomas, F. I. M.

2016-02-01

As populations grow and development efforts continue in coastal regions throughout the world, eutrophication is one of the leading issues surrounding coastal ecosystems. Currently, studies on subterranean groundwater discharge (SGD) are confirming that SGD can contain substantial nutrient concentrations due to agricultural activities, urbanization, leaky septic and sewer systems, and use of fertilizers. Thus, it is important for SGD with high nutrient concentrations to be monitored for its impact on coastal dynamics. Coral reef systems are especially sensitive to changes in nutrient concentrations which can change community composition by creating advantageous biochemical environments for specific algal species. Excess nutrients along with decreased herbivory have been attributed to phase shifts from coral dominated to algal dominated reefs. In this study we mapped algal cover and nutrient load with respect to the groundwater in two fringing reefs (Black Point and Wailupe) in Maunalua Bay, Oahu, Hawaíi. We established relationships between salinity and nutrient concentrations for the two sites by sampling synoptically on an onshore to offshore transect from the SGD seeps (n = 48 Black Point, n = 40 Wailupe, R2 > 0.965). The groundwater end members at the two sites have different nutrient signatures: concentrations at Black Point averaged 167.3 uM N+N (NO3- + NO2-) and 3.57 uM PO43-, while at Wailupe nutrient concentrations averaged 68.7 uM N+N and 1.96 uM PO43-. We used these relationships to calculate nutrient time series after deploying 23 autonomous salinity sensors for one month across the benthos at each site respectively. Benthic surveys taken over 2 seasons indicate that the algal composition and distribution relative to the groundwater sources differ at the two sites. Growth rates of some major macroalgal species also differ with distance from SGD source. Further studies on the biological effects of high SGD-associated nutrients on coastal systems are warranted.

Substrate-induced fit of the ATP binding site of cytidine monophosphate kinase from Escherichia coli: time-resolved fluorescence of 3'-anthraniloyl-2'-deoxy-ADP and molecular modeling.

PubMed

Li de La Sierra, I M; Gallay, J; Vincent, M; Bertrand, T; Briozzo, P; Bârzu, O; Gilles, A M

2000-12-26

The conformation and dynamics of the ATP binding site of cytidine monophosphate kinase from Escherichia coli (CMPK(coli)), which catalyzes specifically the phosphate exchange between ATP and CMP, was studied using the fluorescence properties of 3'-anthraniloyl-2'-deoxy-ADP, a specific ligand of the enzyme. The spectroscopic properties of the bound fluorescent nucleotide change strongly with respect to those in aqueous solution. These changes (red shift of the absorption and excitation spectra, large increase of the excited state lifetime) are compared to those observed in different solvents. These data, as well as acrylamide quenching experiments, suggest that the anthraniloyl moiety is protected from the aqueous solvent upon binding to the ATP binding site, irrespective of the presence of CMP or CDP. The protein-bound ADP analogue exhibits a restricted fast subnanosecond rotational motion, completely blocked by CMP binding. The energy-minimized models of CMPK(coli) complexed with 3'-anthraniloyl-2'-deoxy-ADP using the crystal structures of the ligand-free protein and of its complex with CDP (PDB codes and, respectively) were compared to the crystal structure of UMP/CMP kinase from Dictyostelium discoideum complexed with substrates (PDB code ). The key residues for ATP/ADP binding to CMPK(coli) were identified as R157 and I209, their side chains sandwiching the adenine ring. Moreover, the residues involved in the fixation of the phosphate groups are conserved in both proteins. In the model, the accessibility of the fluorescent ring to the solvent should be substantial if the LID conformation remained unchanged, by contrast to the fluorescence data. These results provide the first experimental arguments about an ATP-mediated induced-fit of the LID in CMPK(coli) modulated by CMP, leading to a closed conformation of the active site, protected from water.

Organic waste impact of capture-based Atlantic bluefin tuna aquaculture at an exposed site in the Mediterranean Sea

NASA Astrophysics Data System (ADS)

Vezzulli, Luigi; Moreno, Mariapaola; Marin, Valentina; Pezzati, Elisabetta; Bartoli, Marco; Fabiano, Mauro

2008-06-01

A variety of pelagic and benthic parameters were measured at an aquaculture farm used for the fattening of Atlantic bluefin tuna ( Thunnus thynnus) which is located at an exposed site (700 m from the coast, average bottom depth of 45 m and average current speed of 6 cm s -1) in the Mediterranean Sea. The objective was to test whether modern off-shore tuna fattening industries can exert a sustainable organic waste impact on the receiving environment as has been reported for the offshore culture of more traditional Mediterranean species such as sparids. In the water column, the concentration of phytopigments, organic matter, heterotrophic bacteria and the taxonomic abundance of mesozooplankton (at the species level) were assessed. In the sediment, we assessed the concentration of reduced sulphur pools, phytopigments, organic matter, heterotrophic bacteria and the taxonomic abundance of meiofauna (at the taxa level) and nematodes (at the genus level). For most parameters, we found no substantial differences between farm and control sites. Deviations of farm values from control values, when they occurred, were small and did not indicate any significant impact on either the pelagic and benthic environment. Deviations were more apparent in the benthic compartment where lower redox potential values, higher bacterial production rates and a change in nematode genus composition pointed out to early changes in the sediment's metabolism. In addition, indigenous potential pathogenic bacteria showed higher concentration at the fish farm stations and were a warning of an undesirable event that may become established following aquaculture practice in oligotrophic environments. The overall data from this study provide extensive experimental evidence to support the sustainability of modern offshore farming technology in minimizing the hypertrophic-dystrophic risks associated with the rapidly-expanding tuna-fattening industry in the Mediterranean Sea.

Enzymatic hydrolysis of p-nitroacetanilide: mechanistic studies of the aryl acylamidase from Pseudomonas fluorescens.

PubMed

Stein, Ross L

2002-01-22

Aryl acylamidase (EC 3.1.5.13; AAA) catalyzes the hydrolysis of p-nitroacetanilide (PNAA) via the standard three-step mechanism of serine hydrolases: binding of substrate (K(s)), acylation of active-site serine (k(acyl)), and hydrolytic deacylation (k(deacyl)). Key mechanistic findings that emerged from this study include that (1) AAA requires a deprotonated base with a pK(a) of 8.3 for expression of full activity toward PNAA. Limiting values of kinetic parameters at high pH are k(c) = 7 s(-1), K(m) = 20 microM, and k(c)/K(m) = 340 000 M(-1) s(-1). (2) At pH 10, where all the isotope effects were conducted, k(c) is equally rate-limited by k(acyl) and k(deacyl). (3) The following isotope effects were determined: (D)()2(O)(k(c)/K(m)) = 1.7 +/- 0.2, (D)()2(O)k(c) = 3.5 +/- 0.3, and (beta)(D)(k(c)/K(m)) = 0.83 +/- 0.04, (beta)(D)k(c) = 0.96 +/- 0.01. These values, together with proton inventories for k(c)/K(m) and k(c), suggest the following mechanism: (i) The initial binding of substrate to enzyme to form the Michaelis complex is accompanied by solvation changes that generate solvent deuterium isotope effects originating from hydrogen ion fractionation at multiple sites on the enzyme surface. (ii) From within the Michaelis complex, the active site serine attacks the carbonyl carbon of PNAA with general-base catalysis to form a substantially tetrahedral transition state enroute to the acyl-enzyme. (iii) Finally, deacylation occurs through a process involving a rate-limiting solvent isotope effect, generating conformational change of the acyl-enzyme that positions the carbonyl bond in a polarizing environment that is optimal for attack by water.

An integrated catch-and-hold mechanism activates nicotinic acetylcholine receptors.

PubMed

Jadey, Snehal; Auerbach, Anthony

2012-07-01

In neuromuscular acetylcholine (ACh) receptor channels (AChRs), agonist molecules bind with a low affinity (LA) to two sites that can switch to high affinity (HA) and increase the probability of channel opening. We measured (by using single-channel kinetic analysis) the rate and equilibrium constants for LA binding and channel gating for several different agonists of adult-type mouse AChRs. Almost all of the variation in the equilibrium constants for LA binding was from differences in the association rate constants. These were consistently below the limit set by diffusion and were substantially different even though the agonists had similar sizes and the same charge. This suggests that binding to resting receptors is not by diffusion alone and, hence, that each binding site can undergo two conformational changes ("catch" and "hold") that connect three different structures (apo-, LA-bound, and HA-bound). Analyses of ACh-binding protein structures suggest that this binding site, too, may adopt three discrete structures having different degrees of loop C displacement ("capping"). For the agonists we tested, the logarithms of the equilibrium constants for LA binding and LA↔HA gating were correlated. Although agonist binding and channel gating have long been considered to be separate processes in the activation of ligand-gated ion channels, this correlation implies that the catch-and-hold conformational changes are energetically linked and together comprise an integrated process having a common structural basis. We propose that loop C capping mainly reflects agonist binding, with its two stages corresponding to the formation of the LA and HA complexes. The catch-and-hold reaction coordinate is discussed in terms of preopening states and thermodynamic cycles of activation.

An integrated catch-and-hold mechanism activates nicotinic acetylcholine receptors

PubMed Central

Jadey, Snehal

2012-01-01

In neuromuscular acetylcholine (ACh) receptor channels (AChRs), agonist molecules bind with a low affinity (LA) to two sites that can switch to high affinity (HA) and increase the probability of channel opening. We measured (by using single-channel kinetic analysis) the rate and equilibrium constants for LA binding and channel gating for several different agonists of adult-type mouse AChRs. Almost all of the variation in the equilibrium constants for LA binding was from differences in the association rate constants. These were consistently below the limit set by diffusion and were substantially different even though the agonists had similar sizes and the same charge. This suggests that binding to resting receptors is not by diffusion alone and, hence, that each binding site can undergo two conformational changes (“catch” and “hold”) that connect three different structures (apo-, LA-bound, and HA-bound). Analyses of ACh-binding protein structures suggest that this binding site, too, may adopt three discrete structures having different degrees of loop C displacement (“capping”). For the agonists we tested, the logarithms of the equilibrium constants for LA binding and LA↔HA gating were correlated. Although agonist binding and channel gating have long been considered to be separate processes in the activation of ligand-gated ion channels, this correlation implies that the catch-and-hold conformational changes are energetically linked and together comprise an integrated process having a common structural basis. We propose that loop C capping mainly reflects agonist binding, with its two stages corresponding to the formation of the LA and HA complexes. The catch-and-hold reaction coordinate is discussed in terms of preopening states and thermodynamic cycles of activation. PMID:22732309

Spatial Variation in Anaerobic Microbial Communities in Wetland Margin Soils

NASA Astrophysics Data System (ADS)

Rich, H.; Kannenberg, S.; Ludwig, S.; Nelson, L. C.; Spawn, S.; Porterfield, J.; Schade, J. D.

2012-12-01

Climate change is predicted to increase the severity and frequency of precipitation and drought events, which may result in substantial temporal variation in the size of wetlands. Wetlands are the world's largest natural emitter of methane, a greenhouse gas that is 20 times more effective at trapping heat than carbon dioxide. Changes in the dynamics of wetland size may lead to changes in the extent and timing of inundation of soils in ephemeral margins, which is likely to influence microbes that rely on anoxic conditions. The impact on process rates may depend on the structure of the community of microbes present in the soil, however, the link between microbial structure and patterns in process rates in soils is not well understood. Our goal was to use molecular techniques to compare microorganism communities in two wetlands that differ in the extent and duration of inundation of marginal soils to assess how these communities may change with changes in climate, and the potential consequences for methane production. This will allow us to examine how community composition changes with soil conditions such as moisture content, frequency of drought and abundance of available carbon. The main focus of this project was to determine the presence or absence of acetoclastic (AC) and hydrogenotrophic (HT) methanogens. AC methanogens use acetate as their main substrate, while HT methanogens use Hydrogen and Carbon dioxide. The relative proportion of these pathways depends on soil conditions, such as competition with other anaerobic microbes and the amount of labile carbon, and spatial patterns in the presence of each can give insight into the soil conditions of a wetland site. We sampled soil from three different wetland ponds of varying permanence in the St Olaf Natural Lands in Northfield, Minnesota, and extracted DNA from these soil samples with a MoBio PowerSoil DNA Isolation Kit. With PCR and seven different primer sets, we tested the extracted DNA for the presence of four different methanogen taxa as well as denitrifying, iron reducing and sulfate reducing bacteria. We used the percentage of soil replicates that tested positive for a primer as an indicator of the population size of each microorganism at each site. The results of the presence/absence test suggested a relationship between soil moisture and abundance of methanogens. The sites with over 25% moisture content showed a higher percent presence than the soil sites with under 25% moisture content for all taxa except for sulfate reducing bacteria. The impact of soil moisture is likely due to negative effects of oxygen on methanogens. However, the presence of methanogens in drier soils shows that methanogens can still exist in a dormant state in aerobic environments. Methanogens may be ubiquitous but vary in population size and activity depending on soil conditions. With changes in wetland soil moisture in response to changes in precipitation patterns, the populations of methanogens may change, affecting the amount of methane production and ultimately the amount of heat trapped by the atmosphere.

Genetics on the World Wide Web.

PubMed

Trangenstein, P A; Hetteberg, C

1998-11-01

Since 1990, when the Human Genome Project was initiated, the amount of genetic information on the World Wide Web (WWW) has grown substantially. The WWW has become an important resource for current, accurate, and reliable genetic information for health care professionals and the general public. The purpose of this article is to provide a variety of genetics-related WWW sites that are useful for all levels of practitioners interested in genetics. In selecting sites to be included in this article, a number of evaluation tools were reviewed. The primary concern was that these sites be reputable and provide accurate, timely information. A table of the WWW sites is included for quick easy reference.

Phenology changes in the mayfly Ephemera danica in response to water temperature variations in the River Dove, UK

NASA Astrophysics Data System (ADS)

Johnson, Matthew; Everall, Nicholas; Wilby, Robert

2015-04-01

Water temperature in rivers is critical to aquatic life. Climate and environmental change can elevate river temperatures to levels that stress fish, but impacts on other aquatic organisms are not well understood. In particular, rising temperatures are expected to alter the phenology of aquatic insects at levels substantially below those required to stress fish species. The phenology of the mayfly Ephemera danica, a large burrowing species that is widespread throughout Europe, is known to be sensitive to temperature change. To assess the temporal and spatial variability in mayfly emergence, E. danica were monitored at two reaches in the River Dove, English Peak District over the period 2007 to 2013. Variations in Growing Degree Days (GDDs) were modelled for an upstream site with an annual temperature range in excess of 15 ° C (Beresford Dale) and a downstream site, dominated by near constant discharges of cool groundwater with an annual range less than 8 ° C (Dovedale). The emergence of E. danica was strongly related to GDDs at each site. E. danica usually remains in an aquatic larval stage for two years before emerging in its adult, terrestrial form. However, after particularly warm summers in Beresford Dale, E. danica was recorded to emerge after only one year in its aquatic form. Following the particularly wet/cold year of 2012, E. danica began to revert back to a bi-annual cycle. In Dovedale, an average of 374 fewer GDDs were accumulated in comparison to Beresford Dale. As a result, E. danica maintained a two-year growth cycle throughout the monitoring period despite the phenology changes observed 8 km upstream at Beresford. Changes to insect phenology are significant because populations with a one-year cycle are potentially more vulnerable to adverse weather when the majority of the population is in terrestrial form. Also, altering the growth, development and size of insects affects reproductive success with implications for population dynamics. Data from the present study suggest that habitats near cool groundwater may provide important refugia for populations of insects, potentially delaying permanent shifts in phenology under climate change. Conventional monitoring of both water temperature and invertebrates, as used by regulatory authorities in the UK, did not identify the changes in insect phenology or the association between phenology and water temperature. Therefore, new monitoring strategies are required in order to identify important changes in aquatic populations in response to rising temperatures.

Determination of Baseline Periods of Record for Selected Streamflow-Gaging Stations in New Jersey for Determining Ecologically Relevant Hydrologic Indices (ERHI)

USGS Publications Warehouse

Esralew, Rachel A.; Baker, Ronald J.

2008-01-01

Hydrologic changes in New Jersey stream basins resulting from human activity can affect the flow and ecology of the streams. To assess future changes in streamflow resulting from human activity an understanding of the natural variability of streamflow is needed. The natural variability can be classified using Ecologically Relevant Hydrologic Indices (ERHIs). ERHIs are defined as selected streamflow statistics that characterize elements of the flow regime that substantially affect biological health and ecological sustainability. ERHIs are used to quantitatively characterize aspects of the streamflow regime, including magnitude, duration, frequency, timing, and rate of change. Changes in ERHI values can occur as a result of human activity, and changes in ERHIs over time at various stream locations can provide information about the degree of alteration in aquatic ecosystems at or near those locations. New Jersey streams can be divided into four classes (A, B, C, or D), where streams with similar ERHI values (determined from cluster analysis) are assigned the same stream class. In order to detect and quantify changes in ERHIs at selected streamflow-gaging stations, a 'baseline' period is needed. Ideally, a baseline period is a period of continuous daily streamflow record at a gaging station where human activity along the contributing stream reach or in the stream's basin is minimal. Because substantial urbanization and other development had already occurred before continuous streamflow-gaging stations were installed, it is not possible to identify baseline periods that meet this criterion for many reaches in New Jersey. Therefore, the baseline period for a considerably altered basin can be defined as a period prior to a substantial human-induced change in the drainage basin or stream reach (such as regulations or diversions), or a period during which development did not change substantially. Index stations (stations with minimal urbanization) were defined as streamflow-gaging stations in basins that contain less than 15 percent urban land use throughout the period of continuous streamflow record. A minimum baseline period of record for each stream class was determined by comparing the variability of selected ERHIs among consecutive 5-, 10-, 15-, and 20-year time increments for index stations. On the basis of this analysis, stream classes A and D were assigned a minimum of 20 years of continuous record as a baseline period and stream classes B and C, a minimum of 10 years. Baseline periods were calculated for 85 streamflow-gaging stations in New Jersey with 10 or more years of continuous daily streamflow data, and the values of 171 ERHIs also were calculated for these baseline periods for each station. Baseline periods were determined by using historical streamflow-gaging station data, estimated changes in impervious surface in the drainage basin, and statistically significant changes in annual base flow and runoff. Historical records were reviewed to identify years during which regulation, diversions, or withdrawals occurred in the drainage basins. Such years were not included in baseline periods of record. For some sites, the baseline period of record was shorter than the minimum period of record specified for the given stream class. In such cases, the baseline period was rated as 'poor'. Impervious surface was used as an indicator of urbanization and change in streamflow characteristics owing to increases in storm runoff and decreases in base flow. Percentages of impervious surface were estimated for 85 streamflow-gaging stations from available municipal population-density data by using a regression model. Where the period of record was sufficiently long, all years after the impervious surface exceeded 10 to 20 percent were excluded from the baseline period. The percentage of impervious surface also was used as a criterion in assigning qualitative ratings to baseline periods. Changes in trends of annual base fl

New Orleans to Venice, Louisiana. Hurricane Protection Project. Appendixes.

DTIC Science & Technology

1985-03-01

bacteria , manganese and phenol, as well as, ammnia, mer- cury, zinc, diazinon, and silver in the water already exceed EPA criteria. Most of these...timber timber growth . growth . 4.6 Spoil areas shall be designated The diked ponding sites for excess to retain spoil at the site, hydraulically dredged...material is discharged will also intensify substantially during dredge and fill operations. However, this condition dissipates rapidly upon cessation

Hazardous waste in the Asian Pacific region.

PubMed

Prasad, Rajendra; Khwaja, Mahmood A

2011-01-01

The production and disposal of hazardous waste remains a substantial problem in the Asian Pacific region. Remediation of waste disposal sites, including landfill sites, is attracting considerable research attention within the region. A recognition of the need for community engagement in this process is also growing. This article reviews the work presented in the Hazardous Waste sessions at the Pacific Basin Consortium for Environment and Health held in November 2009 in Perth.

Water Relations and Gas Exchange of Loblolly Pine Seedlings Under Different Cultural Practices on Poorly Drained Sites in Arkansas

Treesearch

Mohd S. Rahman; Michael G. Messina; Richard F. Fisher

2002-01-01

Substantial forest acreage in the south-central U.S. is seasonally water-logged due to an underlying fragipan. Severely restricted drainage in the non-growing season leads to a reduced subsoil zone, which restricts root respiration. The same sites may also be subjected to summer drought. These climatic and edaphic problems may result in low seedling survival and...

Evolution of Gender Differences in Post-Secondary Human Capital Investments: College Majors. Working Paper #03-11

ERIC Educational Resources Information Center

Gemici, Ahu; Wiswall, Matthew

2011-01-01

Over the past 40 years, the level of human capital investments has changed substantially for men and women. Changes in the intensive margin of college major selection have been also been substantial, as the number of graduates in humanities, social science, and teaching has declined, and the number in science, engineering, and business has…