Manufacture of gradient micro-structures of magnesium alloys using two stage extrusion dies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hwang, Yeong-Maw; Huang, Tze-Hui; Alexandrov, Sergei

2013-12-16

This paper aims to manufacture magnesium alloy metals with gradient micro-structures using hot extrusion process. The extrusion die was designed to have a straight channel part combined with a conical part. Materials pushed through this specially-designed die generate a non-uniform velocity distribution at cross sections inside the die and result in different strain and strain rate distributions. Accordingly, a gradient microstructure product can be obtained. Using the finite element analysis, the forming temperature, effective strain, and effective strain rate distributions at the die exit were firstly discussed for various inclination angles in the conical die. Then, hot extrusion experiments withmore » a two stage die were conducted to obtain magnesium alloy products with gradient micro-structures. The effects of the inclination angle on the grain size distribution at cross sections of the products were also discussed. Using a die of an inclination angle of 15°, gradient micro-structures of the grain size decreasing gradually from 17 μm at the center to 4 μm at the edge of product were achieved.« less

Adipocyte induction of preadipocyte differentiation in a gradient chamber.

PubMed

Lai, Ning; Sims, James K; Jeon, Noo Li; Lee, Kyongbum

2012-12-01

Adipose tissue expansion involves enlargement of mature adipocytes and the formation of new adipocytes through the differentiation of locally resident preadipocytes. Factors released by the enlarged adipocytes are potential cues that induce the differentiation of the preadipocytes. Currently, there are limited options to investigate these cues in isolation from confounding systemic influences. A gradient generating microfluidic channel-based cell culture system was designed to enable solution patterning, while supporting long-term culture and differentiation of preadipocytes. Solution patterning was confirmed by selectively staining a fraction of uniformly seeded preadipocytes. An adipogenic cocktail gradient was used to induce the differentiation of a fraction of uniformly seeded preadipocytes and establish a spatially defined coculture of adipocytes and preadipocytes. Varying the adipogenic cocktail gradient generated cocultures of preadipocytes and adipocytes with different compositions. Transient application of the cocktail gradient, followed by basal medium treatment showed a biphasic induction of differentiation. The two phases of differentiation correlated with a spatial gradient in adipocyte size. Our results provide in vitro data supporting the size-dependent release of preadipocyte differentiation factors by enlarged adipocytes. Prospectively, the coculture system developed in this study could facilitate controlled, yet physiologically meaningful studies on paracrine interactions between adipocytes and preadipocytes during adipose tissue development.

Characterisation of minimal-span plane Couette turbulence with pressure gradients

NASA Astrophysics Data System (ADS)

Sekimoto, Atsushi; Atkinson, Callum; Soria, Julio

2018-04-01

The turbulence statistics and dynamics in the spanwise-minimal plane Couette flow with pressure gradients, so-called, Couette-Poiseuille (C-P) flow, are investigated using direct numerical simulation. The large-scale motion is limited in the spanwise box dimension as in the minimal-span channel turbulence of Flores & Jiménez (Phys. Fluids, vol. 22, 2010, 071704). The effect of the top wall, where normal pressure-driven Poiseuille flow is realised, is distinguished from the events on the bottom wall, where the pressure gradient results in mild or almost-zero wall-shear stress. A proper scaling of turbulence statistics in minimal-span C-P flows is presented. Also the ‘shear-less’ wall-bounded turbulence, where the Corrsin shear parameter is very weak compared to normal wall-bounded turbulence, represents local separation, which is also observed as spanwise streaks of reversed flow in full-size plane C-P turbulence. The local separation is a multi-scale event, which grows up to the order of the channel height even in the minimal-span geometry.

Tessellated permanent magnet circuits for flow-through, open gradient separations of weakly magnetic materials

PubMed Central

Moore, Lee R.; Williams, P. Stephen; Chalmers, Jeffrey J.; Zborowski, Maciej

2017-01-01

Emerging microfluidic-based cell assays favor label-free red blood cell (RBC) depletion. Magnetic separation of RBC is possible because of the paramagnetism of deoxygenated hemoglobin but the process is slow for open-gradient field configurations. In order to increase the throughput, periodic arrangements of the unit magnets were considered, consisting of commercially available Nd-Fe-B permanent magnets and soft steel flux return pieces. The magnet design is uniquely suitable for multiplexing by magnet tessellation, here meaning the tiling of the magnet assembly cross-sectional plane by periodic repetition of the magnet and the flow channel shapes. The periodic pattern of magnet magnetizations allows a reduction of the magnetic material per channel with minimal distortion of the field cylindrical symmetry inside the magnet apertures. A number of such magnet patterns are investigated for separator performance, size and economy with the goal of designing an open-gradient magnetic separator capable of reducing the RBC number concentration a hundred-fold in 1 mL whole blood per hour. PMID:29104346

Tessellated permanent magnet circuits for flow-through, open gradient separations of weakly magnetic materials.

PubMed

Moore, Lee R; Williams, P Stephen; Chalmers, Jeffrey J; Zborowski, Maciej

2017-04-01

Emerging microfluidic-based cell assays favor label-free red blood cell (RBC) depletion. Magnetic separation of RBC is possible because of the paramagnetism of deoxygenated hemoglobin but the process is slow for open-gradient field configurations. In order to increase the throughput, periodic arrangements of the unit magnets were considered, consisting of commercially available Nd-Fe-B permanent magnets and soft steel flux return pieces. The magnet design is uniquely suitable for multiplexing by magnet tessellation, here meaning the tiling of the magnet assembly cross-sectional plane by periodic repetition of the magnet and the flow channel shapes. The periodic pattern of magnet magnetizations allows a reduction of the magnetic material per channel with minimal distortion of the field cylindrical symmetry inside the magnet apertures. A number of such magnet patterns are investigated for separator performance, size and economy with the goal of designing an open-gradient magnetic separator capable of reducing the RBC number concentration a hundred-fold in 1 mL whole blood per hour.

Multi-flux-transformer MRI detection with an atomic magnetometer.

PubMed

Savukov, Igor; Karaulanov, Todor

2014-12-01

Recently, anatomical ultra-low field (ULF) MRI has been demonstrated with an atomic magnetometer (AM). A flux-transformer (FT) has been used for decoupling MRI fields and gradients to avoid their negative effects on AM performance. The field of view (FOV) was limited because of the need to compromise between the size of the FT input coil and MRI sensitivity per voxel. Multi-channel acquisition is a well-known solution to increase FOV without significantly reducing sensitivity. In this paper, we demonstrate twofold FOV increase with the use of three FT input coils. We also show that it is possible to use a single atomic magnetometer and single acquisition channel to acquire three independent MRI signals by applying a frequency-encoding gradient along the direction of the detection array span. The approach can be generalized to more channels and can be critical for imaging applications of non-cryogenic ULF MRI where FOV needs to be large, including head, hand, spine, and whole-body imaging. Copyright © 2014 Elsevier Inc. All rights reserved.

Multi-flux-transformer MRI detection with an atomic magnetometer

PubMed Central

Savukov, Igor; Karaulanov, Todor

2014-01-01

Recently, anatomical ultra-low field (ULF) MRI has been demonstrated with an atomic magnetometer (AM). A flux-transformer (FT) has been used for decoupling MRI fields and gradients to avoid their negative effects on AM performance. The field of view (FOV) was limited because of the need to compromise between the size of the FT input coil and MRI sensitivity per voxel. Multi-channel acquisition is a well-known solution to increase FOV without significantly reducing sensitivity. In this paper, we demonstrate two-fold FOV increase with the use of three FT input coils. We also show that it is possible to use a single atomic magnetometer and single acquisition channel to acquire three independent MRI signals by applying a frequency-encoding gradient along the direction of the detection array span. The approach can be generalized to more channels and can be critical for imaging applications of non-cryogenic ULF MRI where FOV needs to be large, including head, hand, spine, and whole-body imaging. PMID:25462946

Streams Above the Line: Channel Morphology and Flood Control. Proceedings of the Corps of Engineers Workshop on Steep Steams Held in Seattle, Washington on 27-29 October 1992

DTIC Science & Technology

1994-09-01

NRCCLDIAF N’~ Flood r-ntrol Channels Research Misce~lanm’us P.3per HL-94-4 arid De ’ 𔃻opment Program Septernber 1994 Streams Above the Line: Channel IR...be used for advertiwing, pubhCaton, or pronmonal purposes. Citation of tra~ de names does rnot consttuC an official erndorsemterz or approvali for ehc...discharge, and cc. iain inferences are dr-awn,. Othur topIics disCu-sse ’rieLyV ilu~ de : relationships of’Iplanform type- to gradient and bed-material size

Flashy Water and Sediment Delivery to Fluvial Megafan andFan Delta Systems on Opposing Shorelines of an Early Eocene Lake

NASA Astrophysics Data System (ADS)

Jones, E. R.; Plink-Bjorklund, P.

2015-12-01

Flashy delivery of water and sediment had distinct effects on the process of deposition in coeval fluvial megafan and fan delta deposits on opposing shorelines of a paleolake that occupied the Uinta Basin throughout the Eocene. The Tertiary Uinta Basin was an asymmetric continental interior basin with a steep northern margin, adjacent to the block uplift controlling basin subsidence, and a low gradient southern margin. A ~140 km wide fluvial megafan with catchments as far as ~750 km away occupied the southern margin of the lacustrine basin. Within this megafan system, fluvial deposits contain within-channel continental bioturbation and paleosol development on bar accretion surfaces that are evidence of prolonged periods of groundwater flow or channel abandonment. These are punctuated by channel fills exhibiting a suite of both high-deposition rate and upper flow regime sedimentary structures that were deposited by very rapid suspension-fallout during seasonal to episodic river flooding events. A series of small (~8 km wide) and proximally sourced fan deltas fed sediment into the steeper northern margin of the lacustrine basin. 35-50% of the deposits in the delta plain environment of these fan deltas are very sandy debris flows with as low as 5% clay and silt sized material. Detrital zircon geochronology shows that these fan deltas were tapping catchments where mostly unconsolidated Cretaceous sedimentary cover and thick Jurassic eolianites were being eroded. A combination of flashy precipitation, arid climate, catchments mantled by abundant loose sand-sized colluvium, and steep depositional gradients promoted generation of abundant very sandy (5-10% clay and silt sized material) debris flows. In this way, the Wasatch and Green River Formations in the Uinta Basin, Utah, U.S.A. gives us two very different examples of how routing flashy water and sediment delivery (associated with pulses of hyperthermal climate change during the Early Eocene) through different depositional systems produced unique processes of deposition, and also gives us an opportunity to isolate the effects of other variables (e.g. sediment caliber, system gradient, catchment size) that can modulate the flashy precipitation signal in stratigraphy.

Dissimilar viscosity induced sample pre-concentration in elecrokinetic nanofluidic channels

NASA Astrophysics Data System (ADS)

Wink, Dean; Shelton, Elijah; Pennathur, Sumita; Storey, Brian

2013-11-01

Nanofluidic analysis systems boast many advantages: portability, small sample handling, short processing times, and potential for integration with mobile electronics. However, such systems face the challenge of detecting increasingly small volumes of sample at low concentrations. In this work, we demonstrate a unique pre-concentration technique in electrokinetic nanofluidic systems based on a viscosity mismatch between two fluids. In nanofluidic electrokinetic systems, finite electric double layers (EDL) lead to non-uniform electric potentials and transverse concentration distributions. Therefore, when the EDL is comparable in size to the channel height, negatively charged ions are repelled from negatively charged walls and preferentially populate the channel centerline. Furthermore, an axial piecewise viscosity distribution induces internal pressure gradients within the channel. These force the ions to move at a different average velocities based on the pressure gradient being favorable or adverse, leading to focusing. To experimentally probe this phenomenon, we electrokinetically inject solutions of borate buffer with and without glycerol (to change the viscosity) and use a fluorescent tracer dye to visualize the flow. We perform the injections in cross-geometry channels of 20 micron, 1 micron, and 250 nanometer depths. We measure fluorescence at 5, 10 and 15 mm distances from junction. Enhancement is characterized by comparing intensities to control measurements for systems with uniform viscosity.

Investigating the spatial distribution of water levels in the Mackenzie Delta using airborne LiDAR

USGS Publications Warehouse

Hopkinson, C.; Crasto, N.; Marsh, P.; Forbes, D.; Lesack, L.

2011-01-01

Airborne light detection and ranging (LiDAR) data were used to map water level (WL) and hydraulic gradients (??H/??x) in the Mackenzie Delta. The LiDAR WL data were validated against eight independent hydrometric gauge measurements and demonstrated mean offsets from - 0??22 to + 0??04 m (??< 0??11). LiDAR-based WL gradients could be estimated with confidence over channel lengths exceeding 5-10 km where the WL change exceeded local noise levels in the LiDAR data. For the entire Delta, the LiDAR sample coverage indicated a rate of change in longitudinal gradient (??2H/??x) of 5??5 ?? 10-10 m m-2; therefore offering a potential means to estimate average flood stage hydraulic gradient for areas of the Delta not sampled or monitored. In the Outer Delta, within-channel and terrain gradient measurements all returned a consistent estimate of - 1 ?? 10-5 m m-1, suggesting that this is a typical hydraulic gradient for the downstream end of the Delta. For short reaches (<10 km) of the Peel and Middle Channels in the middle of the Delta, significant and consistent hydraulic gradient estimates of - 5 ?? 10-5 m m-1 were observed. Evidence that hydraulic gradients can vary over short distances, however, was observed in the Peel Channel immediately upstream of Aklavik. A positive elevation anomaly (bulge) of > 0??1 m was observed at a channel constriction entering a meander bend, suggesting a localized modification of the channel hydraulics. Furthermore, water levels in the anabranch channels of the Peel River were almost 1 m higher than in Middle Channel of the Mackenzie River. This suggests: (i) the channels are elevated and have shallower bank heights in this part of the delta, leading to increased cross-delta and along-channel hydraulic gradients; and/or (ii) a proportion of the Peel River flow is lost to Middle Channel due to drainage across the delta through anastamosing channels. This study has demonstrated that airborne LiDAR data contain valuable information describing Arctic river delta water surface and hydraulic attributes that would be challenging to acquire by other means. ?? 2011 John Wiley & Sons, Ltd.

X-ray driven channeling acceleration in crystals and carbon nanotubes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shin, Young-Min; Still, Dean A.; Shiltsev, Vladimir

2013-12-01

Acceleration of particles channeling in a crystal by means of diffracted x-rays via Bormann anomalous transmission was conceived for heavy ions and muons by Tajima and Cavenago [Phys. Rev. Lett. 59, 1440 (1987)], which potentially offers an appreciably high field gradient on the order of GV/cm. The theoretical model of the high gradient acceleration has been studied in two kinds of atomic structure, crystals and carbon nanotubes (CNTs), with analytic calculations and electromagnetic eigenmode simulations. A range of acceleration gradients and cutoffs of the x-ray power (the lowest power limit to overcome the Bremsstrahlung radiation losses) are characterized in termsmore » of the lattice constants, unit cell sizes, and photon energies. The parametric analysis indicates that the required x-ray power can be reduced to an order of megawatt by replacing crystals with CNTs. Eventually, the equivalent dielectric approximation of a multi-wall nanotube shows that 250–810 MeV muons can be synchronously coupled with x-rays of 0.65–1.32 keV in the accelerating structure.« less

Basin Hydrology and Substrate Controls on Mountain Stream Morphology: Highlands of Southeastern West Virginia

NASA Astrophysics Data System (ADS)

Burks, T. W.; Springer, G. S.

2004-12-01

Evolution of mountain drainage basins across a broad spectrum of geologic, tectonic, and climatic conditions is an active area of investigation in the field of fluvial geomorphology. Mountain streams are typified by steep channel gradients (>0.002), high channel roughness, rapid changes in drainage area, and high spatial and low temporal variability in channel morphology, leading to complexities in landscape modeling relative to their lowland counterparts. Factors driving this recent investigative trend are the refinement and generation of digital topographic data and terrain analysis software, and more importantly, the demand for a multidiscipline approach to the assessment, restoration, and management of entire watersheds. A significant volume of research has been conducted in mountain drainage basins of the western United States, with particular attention paid to tectonically active regions of the Pacific Northwest, which also contain federally listed threatened and endangered salmonid populations. Brook trout (Salvelinus fontinalis), native to the highlands of the eastern margin of the Appalachian Plateau are impacted by acid rain deposition; however, geomorphic research into landscape modeling, applicable to restoration and management of lotic ecosystems of the eastern United States, is comparatively lacking. This current research explores the potential for modeling channel morphology in mountain streams; specifically, how downstream trends in channel substrate resistance and unit stream power effect the partitioning of mountain stream morphology along and downstream of the fluvial/colluvial transition. In order to address this issue, two mountain drainage basins in the headwaters of the Gauley River watershed on the Appalachian Plateau of southeastern West Virginia were chosen. The westerly flowing Cranberry (250 sqkm) and Cherry (429 sqkm) rivers incise gently northwestward dipping Carboniferous-aged strata (shale, minor coal, siltstone, sandstone, and conglomerate), with a large percentage of both drainages managed as the Monongahela National Forest. A total of 68 reach-scale (10-20 channel widths) channel surveys were completed in which reach gradient, average bankfull channel widths, and bed surface grain size data were determined. This information was synthesized with data extracted from 10-meter digital elevation models using both RiverTools v. 2.4 and ArcGIS Desktop 8.3 terrain analysis software packages. Surveyed channel reach gradients range from (0.002-0.150 m/m) and are characterized by pool-riffle to cascade and step-pool morphologies, though observed morphology succession is atypical of an equilibrated system. Partitioning in channel morphology succession correlates with both changes in lithology (e.g. siltstone to conglomerate) and the extent of headwater debris flow activity, which reflects a shift in the balance between driving and resisting forces as stream size increases.

Man-induced channel adjustment in Tennessee streams

USGS Publications Warehouse

Robbins, C.H.; Simon, Andrew

1983-01-01

Channel modifications in Tennessee, particularly in the western part, have led to large-scale instabilities in the channelized rivers and may have contributed to several bridge failures. These modifications, together with land-use practices, led to downcutting, headward erosion, downstream aggradation, accelerated scour, and bank instabilities. Changes in gradient by channel straightening caused more severe channel response than did dredging or clearing. Large-scale changes continue to occur in all the channelized rivers: the Obion River, its forks, and the South Fork Forked Deer River. However, the non-channelized Hatchie River in west Tennessee not only withstood the natural stresses imposed by the wet years of 1973 to 1975 but continues to exhibit characteristics of stability. Water-surface slope, the primary dependent variable, proved to be a sensitive and descriptive parameter useful in determining channel adjustment. Adjustments to man-induced increases in channel-slope are described by inverse exponential functions of the basic form S=ae(-b(t)); where ' S ' is some function describing channel-slope, ' t ' is the number of years since completion of channel work, and ' a ' and ' b ' are coefficients. Response times for the attainment of ' equilibrium ' channel slopes are a function of the magnitude and extent of the imposed modifications. The adjusted profile gradients attained by the streams following channelization are similar to the predisturbed profile gradients, where no alteration to channel length was made. Where the channels were straightened by constructing cut-offs, thus shortening channel length, then slope adjustments (reduction) proceed past the predisturbed profile gradients, to new profiles with lower gradients. (USGS)

Anabranching rivers on the Northern Plains of arid central Australia

NASA Astrophysics Data System (ADS)

Tooth, Stephen; Nanson, Gerald C.

1999-09-01

Anabranching rivers are a widespread feature of the Northern Plains in the Alice Springs region of central Australia but their unusual characteristics previously have not been described. On the Northern Plains, anabranching occurs on rivers transporting bedloads of coarse sand and gravel and is characterised by channels of variable size and shape which occur within a broader, typically well-defined, channel-train. Channels are separated by channel-train ridges—narrow, flow-aligned, vegetated features—or by wider islands. Ridges and islands are either depositional features (formed in situ by accretionary processes) or erosional features (formed by excision from once-continuous areas of floodplain). Vegetation plays a key role in the initiation, survival and growth of depositional forms through its influence on flow, sediment transport and ridge and island stability. Anabranching is also related to the influence of tributaries, for some large rivers alternate from single-thread to anabranching along their length in response to tributary inputs of water and sediment. Tributary inputs occur during flow events that are either independent from, or in concert with, floods in the trunk channel. Ridges and islands form in association with tributaries as a result of various hydrological, depositional and erosional processes, including irrigation of enhanced numbers of in-channel trees and resulting lee-side sediment accretion, floodplain scour, and the formation and maintenance of deferred-junction tributaries. The change from single-thread to anabranching downstream of tributary junctions occurs in the absence of any significant change in channel gradient or degree of channel confinement. On the Northern Plains, anabranching appears to be a stable river pattern that helps to maintain the throughput of relatively coarse sediment in low-gradient (typically 0.0005-0.002) channels characterised by an abundance of within-channel vegetation and subject to declining downstream discharges.

Bubble Jet agent release cartridge for chemical single cell stimulation.

PubMed

Wangler, N; Welsche, M; Blazek, M; Blessing, M; Vervliet-Scheebaum, M; Reski, R; Müller, C; Reinecke, H; Steigert, J; Roth, G; Zengerle, R; Paust, N

2013-02-01

We present a new method for the distinct specific chemical stimulation of single cells and small cell clusters within their natural environment. By single-drop release of chemical agents with droplets in size of typical cell diameters (d <30 μm) on-demand micro gradients can be generated for the specific manipulation of single cells. A single channel and a double channel agent release cartridge with integrated fluidic structures and integrated agent reservoirs are shown, tested, and compared in this publication. The single channel setup features a fluidic structure fabricated by anisotropic etching of silicon. To allow for simultaneous release of different agents even though maintaining the same device size, the second type comprises a double channel fluidic structure, fabricated by photolithographic patterning of TMMF. Dispensed droplet volumes are V = 15 pl and V = 10 pl for the silicon and the TMMF based setups, respectively. Utilizing the agent release cartridges, the application in biological assays was demonstrated by hormone-stimulated premature bud formation in Physcomitrella patens and the individual staining of one single L 929 cell within a confluent grown cell culture.

A DC electrophoresis method for determining electrophoretic mobility through the pressure driven negation of electro osmosis

NASA Astrophysics Data System (ADS)

Karam, Pascal; Pennathur, Sumita

2016-11-01

Characterization of the electrophoretic mobility and zeta potential of micro and nanoparticles is important for assessing properties such as stability, charge and size. In electrophoretic techniques for such characterization, the bulk fluid motion due to the interaction between the fluid and the charged surface must be accounted for. Unlike current industrial systems which rely on DLS and oscillating potentials to mitigate electroosmotic flow (EOF), we propose a simple alternative electrophoretic method for optically determining electrophoretic mobility using a DC electric fields. Specifically, we create a system where an adverse pressure gradient counters EOF, and design the geometry of the channel so that the flow profile of the pressure driven flow matches that of the EOF in large regions of the channel (ie. where we observe particle flow). Our specific COMSOL-optimized geometry is two large cross sectional areas adjacent to a central, high aspect ratio channel. We show that this effectively removes EOF from a large region of the channel and allows for the accurate optical characterization of electrophoretic particle mobility, no matter the wall charge or particle size.

Mobility of large woody debris (LWD) jams in a low gradient channel

NASA Astrophysics Data System (ADS)

Curran, Joanna C.

2010-04-01

Mobility of large woody debris (LWD) in low gradient channels is an important but often overlooked transport process. The majority of studies on LWD have focused on its role in geomorphic and ecologic river processes. When jams extend across the width of the channel, they have the potential to retain sediment and alter the channel profile. When jams obstruct only a portion of the channel, they can re-direct flow, altering patterns of scour and deposition. The boundary complexity created by LWD has a recognized role in riverine ecosystems which has led to programs of replacing LWD in-channel corridors where it was previously removed. Although LWD jams are common in rivers around the world, they have been studied most intensely in steep, forested channel reaches where they are often found to be stable channel features. It is not fully known how much of the information on LWD from steep forested channels will transfer to other channel types. Whereas it may be reasonable to assume that the ecological benefits of LWD are similar in low gradient channels, research has shown that a much higher rate of LWD transport occurs in low gradient channels, with jams mobilized on timescales of 10 0-10 2 years. This study evaluates the distribution and mobility of LWD over 72 km of the San Antonio River, a low gradient channel in southeast Texas. LWD jam locations were identified for 2003 and 2007 using a combination of aerial photography and field mapping. Each jam was cataloged according to its location in the channel cross-section and the amount of channel area blocked. During the four-year period, all the LWD jams were mobilized, including those jams extending across the channel width. Although easily mobilized, 34 jams re-form in the same locations, creating 34 channel locations with persistent LWD jams. Data from the San Antonio River are applied to two models developed to predict LWD mobility and transport distances to assess the applicability of each model to a low gradient channel. The locations of stable (or recurring) LWD jams were matched to model results where predicted LWD transport distances were equal to measured LWD jam spacing. Model results showed good agreement with the mean and median spacing of LWD jams when given input parameters specific to the channel and wood species. The ability to predict where LWD jams will persist over time in a low gradient channel has application in watershed management. Persistent LWD jams can exert a greater influence on channel morphology and may require active management.

River sedimentation and channel bed characteristics in northern Ethiopia

NASA Astrophysics Data System (ADS)

Demissie, Biadgilgn; Billi, Paolo; Frankl, Amaury; Haile, Mitiku; Lanckriet, Sil; Nyssen, Jan

2016-04-01

Excessive sedimentation and flood hazard are common in ephemeral streams which are characterized by flashy floods. The purposes of this study was to investigate the temporal variability of bio-climatic factors in controlling sediment supply to downstream channel reaches and the effect of bridges on local hydro-geomorphic conditions in causing the excess sedimentation and flood hazard in ephemeral rivers of the Raya graben (northern Ethiopia). Normalized Difference Vegetation Index (NDVI) was analyzed for the study area using Landsat imageries of 1972, 1986, 2000, 2005, 2010, and 2012). Middle term, 1993-2011, daily rainfall data of three meteorological stations, namely, Alamata, Korem and Maychew, were considered to analyse the temporal trends and to calculate the return time intervals of rainfall intensity in 24 hours for 2, 5, 10 and 20 years using the log-normal and the Gumbel extreme events method. Streambed gradient and bed material grain size were measured in 22 river reaches (at bridges and upstream). In the study catchments, the maximum NDVI values were recorded in the time interval from 2000 to 2010, i.e. the decade during which the study bridges experienced the most severe excess sedimentation problems. The time series analysis for a few rainfall parameters do not show any evidence of rainfall pattern accountable for an increase in sediment delivery from the headwaters nor for the generation of higher floods with larger bedload transport capacities. Stream bed gradient and bed material grain size data were measured in order to investigate the effect of the marked decrease in width from the wide upstream channels to the narrow recently constructed bridges. The study found the narrowing of the channels due to the bridges as the main cause of the thick sedimentation that has been clogging the study bridges and increasing the frequency of overbank flows during the last 15 years. Key terms: sedimentation, ephemeral streams, sediment size, bridge clogging

Investigating the influence of lithologic heterogeneity on gas hydrate formation and methane recycling at the base of the gas hydrate stability zone in channelized systems

NASA Astrophysics Data System (ADS)

Daigle, H.; Nole, M.; Cook, A.; Malinverno, A.

2017-12-01

In marine environments, gas hydrate preferentially accumulates in coarse-grained sediments. At the meso- to micro-scale, however, hydrate distribution in these coarse-grained units is often heterogeneous. We employ a methane hydrate reservoir simulator coupling heat and mass transfer as well as capillary effects to investigate how capillary controls on methane solubility affect gas and hydrate accumulations in reservoirs characterized by graded bedding and alternating sequences of coarse-grained sands and fine-grained silt and clay. Simulations bury a channelized reservoir unit encased in homogeneous, fine-grained material characterized by small pores (150 nm) and low permeability ( 1 md in the absence of hydrate). Pore sizes within each reservoir bed between vary between coarse sand and fine silt. Sands have a median pore size of 35 microns and a lognormal pore size distribution. We also investigate how the amount of labile organic carbon (LOC) affects hydrate growth due to microbial methanogenesis within the sediments. In a diffusion-dominated system, methane movies into reservoir layers along spatial gradients in dissolved methane concentration. Hydrate grows in such a way as to minimize these concentration gradients by accumulating slower in finer-grained reservoir layers and faster in coarser-grained layers. Channelized, fining-upwards sediment bodies accumulate hydrate first along their outer surfaces and thence inward from top to bottom. If LOC is present in thin beds within the channel, higher saturations of hydrate will be distributed more homogeneously throughout the unit. When buried beneath the GHSZ, gas recycling can occur only if enough hydrate is present to form a connected gas phase upon dissociation. Simulations indicate that this is difficult to achieve for diffusion-dominated systems, especially those with thick GHSZs and/or small amounts of LOC. However, capillary-driven fracturing behavior may be more prevalent in settings with thick GHSZs.

Investigating the influence of lithologic heterogeneity on gas hydrate formation and methane recycling at the base of the gas hydrate stability zone in channelized systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Daigle, Hugh; Nole, Michael; Cook, Ann

In marine environments, gas hydrate preferentially accumulates in coarse-grained sediments. At the meso- to micro-scale, however, hydrate distribution in these coarse-grained units is often heterogeneous. We employ a methane hydrate reservoir simulator coupling heat and mass transfer as well as capillary effects to investigate how capillary controls on methane solubility affect gas and hydrate accumulations in reservoirs characterized by graded bedding and alternating sequences of coarse-grained sands and fine-grained silt and clay. Simulations bury a channelized reservoir unit encased in homogeneous, fine-grained material characterized by small pores (150 nm) and low permeability (~1 md in the absence of hydrate). Poremore » sizes within each reservoir bed between vary between coarse sand and fine silt. Sands have a median pore size of 35 microns and a lognormal pore size distribution. We also investigate how the amount of labile organic carbon (LOC) affects hydrate growth due to microbial methanogenesis within the sediments. In a diffusion-dominated system, methane movies into reservoir layers along spatial gradients in dissolved methane concentration. Hydrate grows in such a way as to minimize these concentration gradients by accumulating slower in finer-grained reservoir layers and faster in coarser-grained layers. Channelized, fining-upwards sediment bodies accumulate hydrate first along their outer surfaces and thence inward from top to bottom. If LOC is present in thin beds within the channel, higher saturations of hydrate will be distributed more homogeneously throughout the unit. When buried beneath the GHSZ, gas recycling can occur only if enough hydrate is present to form a connected gas phase upon dissociation. Simulations indicate that this is difficult to achieve for diffusion-dominated systems, especially those with thick GHSZs and/or small amounts of LOC. However, capillary-driven fracturing behavior may be more prevalent in settings with thick GHSZs.« less

Reach-Scale Channel Adjustments to Channel Network Geometry in Mountain Bedrock Streams

NASA Astrophysics Data System (ADS)

Plitzuweit, S. J.; Springer, G. S.

2008-12-01

Channel network geometry (CNG) is a critical determinant of hydrological response and may significantly affect incision processes within the Appalachian Plateau near Richwood, West Virginia. The Williams, Cherry, and Cranberry Rivers share drainage divides and their lower reaches flow atop resistant, quartz-rich sandstones. The lower two-thirds of the Cranberry and Williams Rivers display linear profiles atop the sandstones; whereas the Cherry is concave upwards atop the sandstones. Because lithologies and geological structures are similar among the watersheds, we tested whether differences in CNGs explain the profile shapes and reach-scale channel properties. Specifically, we quantified CNG by calculating reach- specific area-distance functions using DEMs. The area-distance functions were then converted into synthetic hydrographs to model hydrological responses. The Cherry River exhibits a classic dendritic drainage pattern, producing peaked hydrographs and low interval transit times. The Cranberry River displays a trellis-like drainage pattern, which produces attenuated hydrographs and high interval transit times. The upstream reaches of the Williams River have a dendritic drainage pattern, but the lower two-thirds of the watershed transitions into an elongated basin with trellis-like CNG. Reach gradients are steeper in the lower reaches of the Williams and Cranberry Rivers where hydrographs are attenuated. In contrast, peaked hydrographs within the Cherry River are associated with lower reach gradients despite resistant sandstone channel beds. Trellis-like CNG may restrict the ability of downstream reaches within the Williams and Cranberry Rivers to achieve the critical discharge needed to cause incision during floods (all other things being equal). If so, increased reach gradients may be hydraulic adjustments that compensate for comparatively low discharges. We are now applying the synthetic hydrographs to HEC-RAS flow models generated from field channel surveys in order to analyze whether stream power and shear stress are adjusted to reflect CNG at the reach- scale. These models are compared to those with discharges calculated using drainage area and precipitation totals alone. We conclude that gradients in bedrock mountain streams may reflect basin-scale hydrology (CNG) and not simply local geological or geomorphic factors. This challenges the conclusions of others who ascribe local channel adjustments to: i) lithology and structure alone, or ii) local colluvium grain sizes.

Chryse Basin channels: low-gradients and ponded flows.

USGS Publications Warehouse

Lucchitta, B.K.; Ferguson, H.M.

1983-01-01

Gradients on the floors of the Martian outflow channels that are derived from radar-elevation profiles across Lunae Planum and Chryse Basin have much lower values than those obtained from the U.S. Geological Survey's topographic map. Whereas the gradients of Maja and Ares Valles are similar to those of the catastrophic flood channels in the Scablands of Washington State, the gradients of Simud and Tiu Valles are essentially level, and the movement of fluids to the N poses problems. It is proposed that ponding may have formed lakes in depressions associated with the Valles Marineris grabens, ancient craters in the chaotic terrain area, and possibly even the regional low where most chaotic terrains occur. It is envisaged that lakes eventually overflowed, forming the present channels. When dams broke, floods were released catastrophically, with a final gigantic flood from the Valles Marineris system of troughs, which would have had sufficient head to move fluids across nearly level gradients through the Simud and Tiu channels. -P.Br.

Gradient isolator for flow field of fuel cell assembly

DOEpatents

Ernst, W.D.

1999-06-15

Isolator(s) include isolating material and optionally gasketing material strategically positioned within a fuel cell assembly. The isolating material is disposed between a solid electrolyte and a metal flow field plate. Reactant fluid carried by flow field plate channel(s) forms a generally transverse electrochemical gradient. The isolator(s) serve to isolate electrochemically a portion of the flow field plate, for example, transversely outward from the channel(s), from the electrochemical gradient. Further, the isolator(s) serve to protect a portion of the solid electrolyte from metallic ions. 4 figs.

Gradient isolator for flow field of fuel cell assembly

DOEpatents

Ernst, William D.

1999-01-01

Isolator(s) include isolating material and optionally gasketing material strategically positioned within a fuel cell assembly. The isolating material is disposed between a solid electrolyte and a metal flow field plate. Reactant fluid carried by flow field plate channel(s) forms a generally transverse electrochemical gradient. The isolator(s) serve to isolate electrochemically a portion of the flow field plate, for example, transversely outward from the channel(s), from the electrochemical gradient. Further, the isolator(s) serve to protect a portion of the solid electrolyte from metallic ions.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ahn, Cheol Hyoun; Hee Kim, So; Gu Yun, Myeong

In this study, we proposed the artificially designed channel structure in oxide thin-film transistors (TFTs) called a “step-composition gradient channel.” We demonstrated Al step-composition gradient Al-Zn-O (AZO) channel structures consisting of three AZO layers with different Al contents. The effects of stacking sequence in the step-composition gradient channel on performance and electrical stability of bottom-gate TFT devices were investigated with two channels of inverse stacking order (ascending/descending step-composition). The TFT with ascending step-composition channel structure (5 → 10 → 14 at. % Al composition) showed relatively negative threshold voltage (−3.7 V) and good instability characteristics with a reduced threshold voltage shift (Δmore » 1.4 V), which was related to the alignment of the conduction band off-set within the channel layer depending on the Al contents. Finally, the reduced Al composition in the initial layer of ascending step-composition channel resulted in the best field effect mobility of 4.5 cm{sup 2}/V s. We presented a unique active layer of the “step-composition gradient channel” in the oxide TFTs and explained the mechanism of adequate channel design.« less

Principles of transverse flow fractionation of microparticles in superhydrophobic channels.

PubMed

Asmolov, Evgeny S; Dubov, Alexander L; Nizkaya, Tatiana V; Kuehne, Alexander J C; Vinogradova, Olga I

2015-07-07

We propose a concept of fractionation of micron-sized particles in a microfluidic device with a bottom wall decorated by superhydrophobic stripes. The stripes are oriented at an angle α to the direction of a driving force, G, which generally includes an applied pressure gradient and gravity. Separation relies on the initial sedimentation of particles under gravity in the main forward flow, and their subsequent lateral deflection near a superhydrophobic wall due to generation of a secondary flow transverse to G. We provide some theoretical arguments allowing us to quantify the transverse displacement of particles in the microfluidic channel, and confirm the validity of theoretical predictions in test experiments with monodisperse fractions of microparticles. Our results can guide the design of superhydrophobic microfluidic devices for efficient sorting of microparticles with a relatively small difference in size and density.

Variation in the reference Shields stress for bed load transport in gravel‐bed streams and rivers

USGS Publications Warehouse

Mueller, Erich R.; Pitlick, John; Nelson, Jonathan M.

2005-01-01

The present study examines variations in the reference shear stress for bed load transport (τr) using coupled measurements of flow and bed load transport in 45 gravel‐bed streams and rivers. The study streams encompass a wide range in bank‐full discharge (1–2600 m3/s), average channel gradient (0.0003–0.05), and median surface grain size (0.027–0.21 m). A bed load transport relation was formed for each site by plotting individual values of the dimensionless transport rate W* versus the reach‐average dimensionless shear stress τ*. The reference dimensionless shear stress τ*r was then estimated by selecting the value of τ* corresponding to a reference transport rate of W* = 0.002. The results indicate that the discharge corresponding to τ*r averages 67% of the bank‐full discharge, with the variation independent of reach‐scale morphologic and sediment properties. However, values of τ*r increase systematically with average channel gradient, ranging from 0.025–0.035 at sites with slopes of 0.001–0.006 to values greater than 0.10 at sites with slopes greater than 0.02. A corresponding relation for the bank‐full dimensionless shear stress τ*bf, formulated with data from 159 sites in North America and England, mirrors the relation between τ*r and channel gradient, suggesting that the bank‐full channel geometry of gravel‐ and cobble‐bedded streams is adjusted to a relatively constant excess shear stress, τ*bf − τ*r, across a wide range of slopes.

The importance of applicator design for intraluminal brachytherapy of rectal cancer.

PubMed

Hansen, Johnny Witterseh; Jakobsen, Anders

2006-09-01

An important aspect of designing an applicator for radiation treatment of rectal cancer is the ability to minimize dose to the mucosa and noninvolved parts of the rectum wall. For this reason we investigated a construction of a flexible multichannel applicator with several channels placed along the periphery of a cylinder and a construction of a rigid cylinder with a central channel and interchangeable shields. Calculations of the dose gradient, dose homogeneity in the tumor, and shielding ability were performed for the two applicators in question. Furthermore, the influence on dose distribution around a flexible multichannel applicator from an unintended off-axis positioning of the source inside a bent channel was investigated by film measurements on a single bent catheter. Calculations showed that a single-channel applicator with interchangeable shields yields a higher degree of shielding and has a better dose homogeneity in the tumor volume than that of a multi-channel applicator. A single-channel applicator with interchangeable shields was manufactured, and the influence of different size of shield angle on dose rate in front of and behind the shields was measured. While dose rate in front of the shield and shielding ability are closely independent of the size of the shield angle when measured 1 cm from the applicator surface, dose rate in more distant volumes will to some extent be influenced by shield angle due to volume scatter conditions.

Iron translocation into and out of Listeria innocua Dps and size distribution of the protein-enclosed nanomineral are modulated by the electrostatic gradient at the 3-fold "ferritin-like" pores.

PubMed

Bellapadrona, Giuliano; Stefanini, Simonetta; Zamparelli, Carlotta; Theil, Elizabeth C; Chiancone, Emilia

2009-07-10

Elucidating pore function at the 3-fold channels of 12-subunit, microbial Dps proteins is important in understanding their role in the management of iron/hydrogen peroxide. The Dps pores are called "ferritin-like" because of the structural resemblance to the 3-fold channels of 24-subunit ferritins used for iron entry and exit to and from the protein cage. In ferritins, negatively charged residues lining the pores generate a negative electrostatic gradient that guides iron ions toward the ferroxidase centers for catalysis with oxidant and destined for the mineralization cavity. To establish whether the set of three aspartate residues that line the pores in Listeria innocua Dps act in a similar fashion, D121N, D126N, D130N, and D121N/D126N/D130N proteins were produced; kinetics of iron uptake/release and the size distribution of the iron mineral in the protein cavity were compared. The results, discussed in the framework of crystal growth in a confined space, indicate that iron uses the hydrophilic 3-fold pores to traverse the protein shell. For the first time, the strength of the electrostatic potential is observed to modulate kinetic cooperativity in the iron uptake/release processes and accordingly the size distribution of the microcrystalline iron minerals in the Dps protein population.

Design Evaluation Using Finite Element Analysis of Cooled Silicon Nitride Plates for a Turbine Blade Application

NASA Technical Reports Server (NTRS)

Abdul-Aziz, Ali; Baaklini, George Y.; Bhatt, Ramakrishna T.

2001-01-01

Two- and three-dimensional finite element analyses were performed on uncoated and thermal barrier coated (TBC) silicon nitride plates with and without internal cooling by air. Steady-state heat-transfer analyses were done to optimize the size and the geometry of the cooling channels to reduce thermal stresses, and to evaluate the thermal environment experienced by the plate during burner rig testing. The limited experimental data available were used to model the thermal profile exerted by the flame on the plate. Thermal stress analyses were performed to assess the stress response due to thermal loading. Contours for the temperature and the representative stresses for the plates were generated and presented for different cooling hole sizes and shapes. Analysis indicates that the TBC experienced higher stresses, and the temperature gradient was much reduced when the plate was internally cooled by air. The advantages and disadvantages of several cooling channel layouts were evaluated.

Woody riparian vegetation near selected streamgages in the western United States

USGS Publications Warehouse

Auble, Gregor T.; Friedman, Jonathan M.; Shafroth, Patrick B.; Merigliano, Michael F.; Scott, Michael L.

2012-01-01

Areal cover and occupancy of woody riparian species near 456 streamgages in the western United States were obtained from site visits during the growing seasons of 1996-2002. We made concomitant estimates of grazing intensity, channel stabilization and incision, gradient, sediment particle size, and nearby planting of Russian olive. The purpose of this publication is to describe the data set and make it available to other investigators in an electronic format.

A diffusion based long-range and steady chemical gradient generator on a microfluidic device for studying bacterial chemotaxis

NASA Astrophysics Data System (ADS)

Murugesan, Nithya; Singha, Siddhartha; Panda, Tapobrata; Das, Sarit K.

2016-03-01

Studies on chemotaxis in microfluidics device have become a major area of research to generate physiologically similar environment in vitro. In this work, a novel micro-fluidic device has been developed to study chemo-taxis of cells in near physiological condition which can create controllable, steady and long-range chemical gradients using various chemo-effectors in a micro-channel. Hydrogels like agarose, collagen, etc, can be used in the device to maintain exclusive diffusive flux of various chemical species into the micro-channel under study. Variations of concentrations and flow rates of Texas Red dextran in the device revealed that an increase in the concentration of the dye in the feed from 6 to 18 μg ml-1, causes a steeper chemical gradient in the device, whereas the flow rate of the dye has practically no effect on the chemical gradient in the device. This observation confirms that a diffusion controlled chemical gradient is generated in the micro-channel. Chemo-taxis of E. coli cells were studied under the steady gradient of a chemo-attractant and a chemo-repellent separately in the same chemical gradient generator. For sorbitol and NiSO4·6H2O, the bacterial cells exhibit a steady distribution in the micro channel after 1 h and 30 min, respectively. From the distribution of bacterial population chemo-tactic strength of the chemo-effectors was estimated for E. coli. In a long microfluidic channel, migration behavior of bacterial cells under diffusion controlled chemical gradient showed chemotaxis, random movement, aggregation, and concentration dependent reverse chemotaxis.

Effects of the magnetic field gradient on the wall power deposition of Hall thrusters

NASA Astrophysics Data System (ADS)

Ding, Yongjie; Li, Peng; Zhang, Xu; Wei, Liqiu; Sun, Hezhi; Peng, Wuji; Yu, Daren

2017-04-01

The effect of the magnetic field gradient in the discharge channel of a Hall thruster on the ionization of the neutral gas and power deposition on the wall is studied through adopting the 2D-3V particle-in-cell (PIC) and Monte Carlo collisions (MCC) model. The research shows that by gradually increasing the magnetic field gradient while keeping the maximum magnetic intensity at the channel exit and the anode position unchanged, the ionization region moves towards the channel exit and then a second ionization region appears near the anode region. Meanwhile, power deposition on the walls decreases initially and then increases. To avoid power deposition on the walls produced by electrons and ions which are ionized in the second ionization region, the anode position is moved towards the channel exit as the magnetic field gradient is increased; when the anode position remains at the zero magnetic field position, power deposition on the walls decreases, which can effectively reduce the temperature and thermal load of the discharge channel.

Mapping ephemeral stream networks in desert environments using very-high-spatial-resolution multispectral remote sensing

DOE PAGES

Hamada, Yuki; O'Connor, Ben L.; Orr, Andrew B.; ...

2016-03-26

In this paper, understanding the spatial patterns of ephemeral streams is crucial for understanding how hydrologic processes influence the abundance and distribution of wildlife habitats in desert regions. Available methods for mapping ephemeral streams at the watershed scale typically underestimate the size of channel networks. Although remote sensing is an effective means of collecting data and obtaining information on large, inaccessible areas, conventional techniques for extracting channel features are not sufficient in regions that have small topographic gradients and subtle target-background spectral contrast. By using very high resolution multispectral imagery, we developed a new algorithm that applies landscape information tomore » map ephemeral channels in desert regions of the Southwestern United States where utility-scale solar energy development is occurring. Knowledge about landscape features and structures was integrated into the algorithm using a series of spectral transformation and spatial statistical operations to integrate information about landscape features and structures. The algorithm extracted ephemeral stream channels at a local scale, with the result that approximately 900% more ephemeral streams was identified than what were identified by using the U.S. Geological Survey’s National Hydrography Dataset. The accuracy of the algorithm in detecting channel areas was as high as 92%, and its accuracy in delineating channel center lines was 91% when compared to a subset of channel networks that were digitized by using the very high resolution imagery. Although the algorithm captured stream channels in desert landscapes across various channel sizes and forms, it often underestimated stream headwaters and channels obscured by bright soils and sparse vegetation. While further improvement is warranted, the algorithm provides an effective means of obtaining detailed information about ephemeral streams, and it could make a significant contribution toward improving the hydrological modelling of desert environments.« less

Mapping ephemeral stream networks in desert environments using very-high-spatial-resolution multispectral remote sensing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hamada, Yuki; O'Connor, Ben L.; Orr, Andrew B.

In this paper, understanding the spatial patterns of ephemeral streams is crucial for understanding how hydrologic processes influence the abundance and distribution of wildlife habitats in desert regions. Available methods for mapping ephemeral streams at the watershed scale typically underestimate the size of channel networks. Although remote sensing is an effective means of collecting data and obtaining information on large, inaccessible areas, conventional techniques for extracting channel features are not sufficient in regions that have small topographic gradients and subtle target-background spectral contrast. By using very high resolution multispectral imagery, we developed a new algorithm that applies landscape information tomore » map ephemeral channels in desert regions of the Southwestern United States where utility-scale solar energy development is occurring. Knowledge about landscape features and structures was integrated into the algorithm using a series of spectral transformation and spatial statistical operations to integrate information about landscape features and structures. The algorithm extracted ephemeral stream channels at a local scale, with the result that approximately 900% more ephemeral streams was identified than what were identified by using the U.S. Geological Survey’s National Hydrography Dataset. The accuracy of the algorithm in detecting channel areas was as high as 92%, and its accuracy in delineating channel center lines was 91% when compared to a subset of channel networks that were digitized by using the very high resolution imagery. Although the algorithm captured stream channels in desert landscapes across various channel sizes and forms, it often underestimated stream headwaters and channels obscured by bright soils and sparse vegetation. While further improvement is warranted, the algorithm provides an effective means of obtaining detailed information about ephemeral streams, and it could make a significant contribution toward improving the hydrological modelling of desert environments.« less

Direct measurements of local bed shear stress in the presence of pressure gradients

NASA Astrophysics Data System (ADS)

Pujara, Nimish; Liu, Philip L.-F.

2014-07-01

This paper describes the development of a shear plate sensor capable of directly measuring the local mean bed shear stress in small-scale and large-scale laboratory flumes. The sensor is capable of measuring bed shear stress in the range 200 Pa with an accuracy up to 1 %. Its size, 43 mm in the flow direction, is designed to be small enough to give spatially local measurements, and its bandwidth, 75 Hz, is high enough to resolve time-varying forcing. Typically, shear plate sensors are restricted to use in zero pressure gradient flows because secondary forces on the edge of the shear plate caused by pressure gradients can introduce large errors. However, by analysis of the pressure distribution at the edges of the shear plate in mild pressure gradients, we introduce a new methodology for correcting for the pressure gradient force. The developed sensor includes pressure tappings to measure the pressure gradient in the flow, and the methodology for correction is applied to obtain accurate measurements of bed shear stress under solitary waves in a small-scale wave flume. The sensor is also validated by measurements in a turbulent flat plate boundary layer in open channel flow.

Archaeological Geology of the Fort Hood Military Reservation, Fort Hood, Texas

DTIC Science & Technology

1992-06-01

stream with a sinuosity of 1.3 and channel gradient of 1.4 m/km. Discharge records near Killeen over a six year period during the 1920’s and 1940’s...drains approximately 175 km2 of lower Cretaceous limestones, shales and marls (Fig. 2). Sinuosity is 1.3, channel gradient 3.2 m/km, and drainage...CREEK Within the study area Owl Creek drains approximately 72 km 2 of shales and limestones, has a sinuosity of 1.1, channel gradient of 3.4 m/kin, and

Fabrication of microscale materials with programmable composition gradients.

PubMed

Laval, Cédric; Bouchaudy, Anne; Salmon, Jean-Baptiste

2016-04-07

We present an original microfluidic technique coupling pervaporation and the use of Quake valves to fabricate microscale materials (∼10 × 100 μm(2) × 1 cm) with composition gradients along their longest dimension. Our device exploits pervaporation of water through a thin poly(dimethylsiloxane) (PDMS) membrane to continuously pump solutions (or dispersions) contained in different reservoirs connected to a microfluidic channel. This pervaporation-induced flow concentrates solutes (or particles) at the tip of the channel up to the formation of a dense material. The latter invades the channel as it is constantly enriched by an incoming flux of solutes/particles. Upstream Quake valves are used to select which reservoir is connected to the pervaporation channel and thus which solution (or dispersion) enriches the material during its growth. The microfluidic configuration of the pervaporation process is used to impose controlled growth along the channel thus enabling one to program spatial composition gradients using appropriate actuations of the valves. We demonstrate the possibilities offered by our technique through the fabrication of dense assemblies of nanoparticles and polymer composites with programmed gradients of fluorescent dyes. We also address the key issue of the spatial resolution of our gradients and we show that well-defined spatial modulations down to ≈50 μm can be obtained within colloidal materials, whereas gradients within polymer materials are resolved on length scales down to ≈1 mm due to molecular diffusion.

The Role of Conjoining (Tie) Channels in Lowland Floodplain Development and Lake Infilling

NASA Astrophysics Data System (ADS)

Rowland, J. C.; Dietrich, W. E.; Day, G.; Lepper, K.; Wilson, C. J.

2003-12-01

In simple models of lowland river systems, water and sediment enter the main stem via tributary and secondary channels and are only redistributed to the floodplain during overbank and crevasse splay events. Along numerous river systems across the globe, however, water and sediment are regularly exchanged between the river and off river water bodies via stable, narrow channels. These channels, known as tie channels on the Fly River in Papua New Guinea and batture channels along the lower Mississippi, are largely overlooked but important components of floodplain sediment dispersal where they exist. These channels become pathways of sediment dispersal to the floodplain system when elevated river stages force sediment-laden flows into the off-river water bodies. On the Fly River, it is estimated that about 50% of the sediment delivery to the floodplain is via these channels, and along low gradient tributary channels during flood driven flow reversals. During low flow, tie channels serve to drain the floodplain. With the outgoing flows, large amounts sediment can be carried and lost to the floodplain; floodplain lakes progressively infill with sediment as the mouth of these channels steadily prograde lakeward. These lake deposits not only become significant stratigraphic components of floodplains (traditionally referred to as clay plugs), but are important local sinks recording hundreds to thousands of years of river history. As with all sinks, the proper interpretation of these stratigraphic records requires understanding the processes by which sediment is delivered to the sink and how these processes alter the paleohydraulic and climatic signals of interest. We have conducted field investigations of conjoining channels in Papua New Guinea (the Fly and Strickland Rivers), Louisiana (Raccourci Old River ~ 65 km upriver of Baton Rouge) and Alaska (Birch Creek). These field investigations include extensive surveys of both cross and along channel morphological trends, grain size characteristics, water levels and geochronological sampling using optically stimulated luminescence (OSL). Across all systems channel morphology is similar and exhibit scale independence, however, channel size and rates of progradation are directly related to the size of the main stem river. Through these studies and ongoing scaled modeling we are examining the morphodynamics that lead to the formation, advancement and stability of these unique self formed channels.

Downstream Channel Change and Bed-material Transport along the North Fork Stillaguamish River Following the March 22, 2014 SR530 Landslide, Northwestern Washington, USA

NASA Astrophysics Data System (ADS)

Keith, M. K.; Anderson, S. W.; Magirl, C. S.

2015-12-01

The March 22, 2014, catastrophic landslide near Oso, Washington, rapidly emplaced approximately 8 million m3 of slide material onto the valley floor, blocking the North Fork Stillaguamish River. Overtopping of the landslide dam and subsequent channel incision through the deposit mobilized large volumes of the glacial outwash, till, and lacustrine (silts and clays) sediment. The abundant sediment introduced to the gravel-bed channel prompted concerns of downstream aggradation and elevated hazards from seasonal flooding and channel migration. Our assessment of downstream aggradation potential and channel change was primarily based on 1) comparison of pre-slide to post-slide field-based and remote-sensing observations, 2) measurements of bedload transport, and 3) modeling of bedload transport for eight flow scenarios between 25% of the 2-year flow and the 100-year flow at several sites along the lower 65-km alluvial portion of the river. Although measurements of pre-slide grain-size distributions were highly variable from year to year, comparison of those counts to 2014 post-slide measurements show a general fining of channel and bar surface material. Between 2014 and 2015, we observed coarsening at some bars, most notably for sediment smaller than 4 mm. From aerial photograph inspection, the shape, size, and distribution of gravel and sand bars between the landslide and the mouth of the North Fork Stillaguamish River appears to have been relatively unchanged between 2013 and 2015. Post-slide bedload transport capacity rates were calculated using Parker, Wilcock and Crowe, and two forms of Recking equations. Transport capacities for the narrow and confined channel where it has incised through the landslide are much greater compared with the low gradient and wide floodplain segments downstream. Nevertheless, because of fine grain sizes within the landslide debris, most of the sediment has been transported through the downstream channel, resulting in minimal aggradation.

Recent adjustments to the long profile of Cooksville Creek, an urbanized bedrock channel in Mississauga, Ontario

NASA Astrophysics Data System (ADS)

Tinkler, Keith J.; Parish, John

Cooksville Creek (33 km2) is based in weak Georgian Bay Formation shale and thin limestone and has been gradually urbanized by the City of Mississauga within the last thirty years. These conditions, together with a mean thalweg gradient of about 0.77%, have produced enhanced rates of channel bed erosion along much of the channel (the order of 2 centimetres per year), as revealed by installed engineering works, such as armour stone blocks and gabion baskets. Erosion rates below drop structures are up to an order of magnitude faster. A year-long monitoring program revealed that weathering of the shale bed by wetting and drying cycles was primarily responsible for fragmenting the shale to a size (a few centimetres on the long axis) which could be removed by frequent and moderate high flows with a magnitude much less than the Mean Annual Flood. Channel bed quarrying of shale and limestone slabs, and the transport of larger clasts and meter dimension armour stones toppled from channel structures, require flood flows with a recurrence interval of about the Mean Annual Flood. Such flows are characterized by critical or supercritical flow conditions along the thalweg, and with velocities typically in the range 4 to 6 meters per second, they are well able to quarry the bed, and transport clasts up to metre dimension in size.

The importance of applicator design for intraluminal brachytherapy of rectal cancer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hansen, Johnny Witterseh; Jakobsen, Anders; Department of Oncology, Hospital of Vejle, DK-7100 Vejle

2006-09-15

An important aspect of designing an applicator for radiation treatment of rectal cancer is the ability to minimize dose to the mucosa and noninvolved parts of the rectum wall. For this reason we investigated a construction of a flexible multichannel applicator with several channels placed along the periphery of a cylinder and a construction of a rigid cylinder with a central channel and interchangeable shields. Calculations of the dose gradient, dose homogeneity in the tumor, and shielding ability were performed for the two applicators in question. Furthermore, the influence on dose distribution around a flexible multichannel applicator from an unintendedmore » off-axis positioning of the source inside a bent channel was investigated by film measurements on a single bent catheter. Calculations showed that a single-channel applicator with interchangeable shields yields a higher degree of shielding and has a better dose homogeneity in the tumor volume than that of a multichannel applicator. A single-channel applicator with interchangeable shields was manufactured, and the influence of different size of shield angle on dose rate in front of and behind the shields was measured. While dose rate in front of the shield and shielding ability are closely independent of the size of the shield angle when measured 1 cm from the applicator surface, dose rate in more distant volumes will to some extent be influenced by shield angle due to volume scatter conditions.« less

The Role of Three-Dimensional Boundary Stresses in Limiting the Occurrence and Size of Experimental Landslides

NASA Astrophysics Data System (ADS)

Prancevic, Jeffrey P.; Lamb, Michael P.; Palucis, Marisa C.; Venditti, Jeremy G.

2018-01-01

The occurrence of seepage-induced shallow landslides on hillslopes and steep channel beds is important for landscape evolution and natural hazards. Infinite-slope stability models have been applied for seven decades, but sediment beds generally require higher water saturation levels than predicted for failure, and controlled experiments are needed to test models. We initiated 90 landslides in a 5 m long laboratory flume with a range in sediment sizes (D = 0.7, 2, 5, and 15 mm) and hillslope angles (θ = 20° to 43°), resulting in subsurface flow that spanned the Darcian and turbulent regimes, and failures that occurred with subsaturated and supersaturated sediment beds. Near complete saturation was required for failure in most experiments, with water levels far greater than predicted by infinite-slope stability models. Although 3-D force balance models predict that larger landslides are less stable, observed downslope landslide lengths were typically only several decimeters, not the entire flume length. Boundary stresses associated with short landslides can explain the increased water levels required for failure, and we suggest that short failures are tied to heterogeneities in granular properties. Boundary stresses also limited landslide thicknesses, and landslides progressively thinned on lower gradient hillslopes until they were one grain diameter thick, corresponding to a change from near-saturated to supersaturated sediment beds. Thus, landslides are expected to be thick on steep hillslopes with large frictional stresses acting on the boundaries, whereas landslides should be thin on low-gradient hillslopes or in channel beds with a critical saturation level that is determined by sediment size.

Solvent-programmed microchip open-channel electrochromatography.

PubMed

Kutter, J P; Jacobson, S C; Matsubara, N; Ramsey, J M

1998-08-01

Open-channel electrochromatography in combination with solvent programming is demonstrated using a microchip device. Channel walls were coated with octadecylsilanes at ambient temperatures, yielding stationary phases for chromatographic separations of neutral dyes. The electroosmotic flow after coating was sufficient to ensure transport of all species and on-chip mixing of isocratic and gradient elution conditions with acetonitrile-buffer mixtures. Chips having different channel depths between 10.2 and 2.9 μm were evaluated for performance, and van Deemter plots were established. Channel depths of about 5 μm were found to be a good compromise between efficiency and ease of operation. Isocratic and gradient elution conditions were easily established and manipulated by computer-controlled application of voltages to the terminals of the microchip. Linear gradients with different slopes, start times, duration times, and start percentages of organic modifier proved to be powerful tools to tune selectivity and analysis time for the separation of a test mixture. Even very steep gradients still produced excellent efficiencies. Together with fast reconditioning times, complete runs could be finished in under 60 s.

Spatio-temporal development of vegetation die-off in a submerging coastal marsh

USGS Publications Warehouse

Schepers, Lennert; Kirwan, Matthew; Guntenspergen, Glenn R.; Temmerman, Stijn

2017-01-01

In several places around the world, coastal marsh vegetation is converting to open water through the formation of pools. This is concerning, as vegetation die-off is expected to reduce the marshes' capacity to adapt to sea level rise by vegetation-induced sediment accretion. Quantitative analyses of the spatial and temporal development of marsh vegetation die-off are scarce, although these are needed to understand the bio-geomorphic feedback effects of vegetation die-off on flow, erosion, and sedimentation. In this study, we quantified the spatial and temporal development of marsh vegetation die-off with aerial images from 1938 to 2010 in a submerging coastal marsh along the Blackwater River (Maryland, U.S.A). Our results indicate that die-off begins with conversion of marsh vegetation into bare open water pools that are relatively far (> 75 m) from tidal channels. As vegetation die-off continues, pools expand, and new pools emerge at shorter and shorter distances from channels. Consequently larger pools are found at larger distances from the channels. Our results suggest that the size of the pools and possibly the connection of pools with the tidal channel system have important bio-geomorphic implications and aggravate marsh deterioration. Moreover, we found that the temporal development of vegetation die-off in moderately degraded marshes is similar as the spatial die-off development along a present-day gradient, which indicates that the contemporary die-off gradient might be considered a chronosequence that offers a unique opportunity to study vegetation die-off processes.

Studies of bacterial aerotaxis in a microfluidic device

PubMed Central

Adler, Micha; Erickstad, Michael; Gutierrez, Edgar; Groisman, Alex

2012-01-01

Aerotaxis, the directional motion of bacteria in gradients of oxygen, was discovered in late 19th century and has since been reported in a variety of bacterial species. Nevertheless, quantitative studies of aerotaxis have been complicated by the lack of tools for generation of stable gradients of oxygen concentration, [O2]. Here we report a series of experiments on aerotaxis of Escherichia coli in a specially built experimental setup consisting of a computer-controlled gas mixer and a two-layer microfluidic device made of polydimethylsiloxane (PDMS). The setup enables generation of a variety of stable linear profiles of [O2] across a long gradient channel, with characteristic [O2] ranging from aerobic to microaerobic conditions. A suspension of E. coli cells is perfused through the gradient channel at a low speed, allowing cells enough time to explore the [O2] gradient, and the distribution of cells across the channel is analyzed near the channel outlet at a throughput of >105 cells per hour. Aerotaxis experiments are performed in [O2] gradients with identical logarithmic slopes and varying mean concentrations, as well as in gradients with identical mean concentrations and varying slopes. Experiments in gradients with [O2] ranging from 0 to ~11.5% indicate that, in contrast to some previous reports, E. coli cells do not congregate at some intermediate level of [O2], but rather prefer the highest accessible [O2]. The presented technology can be applied to studies of aerotaxis of other aerobic and microaerobic bacteria. PMID:23010909

Time and the rivers flowing: Fluvial geomorphology since 1960

NASA Astrophysics Data System (ADS)

Wohl, Ellen

2014-07-01

Fluvial geomorphology has been the largest single subdiscipline within geomorphology for many decades. Fluvial geomorphic expertise is integral to understanding and managing rivers and to developing strategies for sustainable development. This paper provides an overview of some of the significant advances in fluvial geomorphology between 1960 and 2010 with respect to: conceptual models; fluvial features and environments being studied; tools used by fluvial geomorphologists; geomorphic specialty groups within professional societies; journals in which fluvial geomorphic research is published; and textbooks of fluvial geomorphology. During this half century, fluvial geomorphology broadened considerably in scope, from a focus primarily on physical principles underlying process and form in lower gradient channels with limited grain size range, to a more integrative view of rivers as ecosystems with nonlinear behavior and great diversity of gradient, substrate composition, and grain size. The array of tools for making basic observations, analyzing data, and disseminating research results also expanded considerably during this period, as did the diversity of the fluvial geomorphic community.

Physical integrity: the missing link in biological monitoring and TMDLs.

PubMed

Asmus, Brenda; Magner, Joseph A; Vondracek, Bruce; Perry, Jim

2009-12-01

The Clean Water Act mandates that the chemical, physical, and biological integrity of our nation's waters be maintained and restored. Physical integrity has often been defined as physical habitat integrity, and as such, data collected during biological monitoring programs focus primarily on habitat quality. However, we argue that channel stability is a more appropriate measure of physical integrity and that channel stability is a foundational element of physical habitat integrity in low-gradient alluvial streams. We highlight assessment tools that could supplement stream assessments and the Total Maximum Daily Load stressor identification process: field surveys of bankfull cross-sections; longitudinal thalweg profiles; particle size distribution; and regionally calibrated, visual, stream stability assessments. Benefits of measuring channel stability include a more informed selection of reference or best attainable stream condition for an Index of Biotic Integrity, establishment of a baseline for monitoring changes in present and future condition, and indication of channel stability for investigations of chemical and biological impairments associated with sediment discontinuity and loss of habitat quality.

An integrated microfluidic cell for detection, manipulation, and sorting of single micron-sized magnetic beads

NASA Astrophysics Data System (ADS)

Jiang, Z.; Llandro, J.; Mitrelias, T.; Bland, J. A. C.

2006-04-01

A lab-on-a-chip integrated microfluidic cell has been developed for magnetic biosensing, which is comprised of anisotropic magnetoresistance (AMR) sensors optimized for the detection of single magnetic beads and electrodes to manipulate and sort the beads, integrated into a microfluidic channel. The device is designed to read out the real-time signal from 9 μm diameter magnetic beads moving over AMR sensors patterned into 18×4.5 μm rectangles and 10 μm diameter rings and arranged in Wheatstone bridges. The beads are moved over the sensors along a 75×75 μm wide channel patterned in SU8. Beads of different magnetic moments can be sorted through a magnetostatic sorting gate into different branches of the microfluidic channel using a magnetic field gradient applied by lithographically defined 120 nm thick Cu striplines carrying 0.2 A current.

Performance optimization in electric field gradient focusing.

PubMed

Sun, Xuefei; Farnsworth, Paul B; Tolley, H Dennis; Warnick, Karl F; Woolley, Adam T; Lee, Milton L

2009-01-02

Electric field gradient focusing (EFGF) is a technique used to simultaneously separate and concentrate biomacromolecules, such as proteins, based on the opposing forces of an electric field gradient and a hydrodynamic flow. Recently, we reported EFGF devices fabricated completely from copolymers functionalized with poly(ethylene glycol), which display excellent resistance to protein adsorption. However, the previous devices did not provide the predicted linear electric field gradient and stable current. To improve performance, Tris-HCl buffer that was previously doped in the hydrogel was replaced with a phosphate buffer containing a salt (i.e., potassium chloride, KCl) with high mobility ions. The new devices exhibited stable current, good reproducibility, and a linear electric field distribution in agreement with the shaped gradient region design due to improved ion transport in the hydrogel. The field gradient was calculated based on theory to be approximately 5.76 V/cm(2) for R-phycoerythrin when the applied voltage was 500 V. The effect of EFGF separation channel dimensions was also investigated; a narrower focused band was achieved in a smaller diameter channel. The relationship between the bandwidth and channel diameter is consistent with theory. Three model proteins were resolved in an EFGF channel of this design. The improved device demonstrated 14,000-fold concentration of a protein sample (from 2 ng/mL to 27 microg/mL).

Coevolution of bed surface patchiness and channel morphology: 1. Mechanisms of forced patch formation

USGS Publications Warehouse

Nelson, Peter A.; McDonald, Richard R.; Nelson, Jonathan M.; Dietrich, William E.

2015-01-01

Riverbeds frequently display a spatial structure where the sediment mixture composing the channel bed has been sorted into discrete patches of similar grain size. Even though patches are a fundamental feature in gravel bed rivers, we have little understanding of how patches form, evolve, and interact. Here we present a two-dimensional morphodynamic model that is used to examine in greater detail the mechanisms responsible for the development of forced bed surface patches and the coevolution of bed morphology and bed surface patchiness. The model computes the depth-averaged channel hydrodynamics, mixed-grain-size sediment transport, and bed evolution by coupling the river morphodynamic model Flow and Sediment Transport with Morphological Evolution of Channels (FaSTMECH) with a transport relation for gravel mixtures and the mixed-grain-size Exner equation using the active layer assumption. To test the model, we use it to simulate a flume experiment in which the bed developed a sequence of alternate bars and temporally and spatially persistent forced patches with a general pattern of coarse bar tops and fine pools. Cross-stream sediment flux causes sediment to be exported off of bars and imported into pools at a rate that balances downstream gradients in the streamwise sediment transport rate, allowing quasi-steady bar-pool topography to persist. The relative importance of lateral gravitational forces on the cross-stream component of sediment transport is a primary control on the amplitude of the bars. Because boundary shear stress declines as flow shoals over the bars, the lateral sediment transport is increasingly size selective and leads to the development of coarse bar tops and fine pools.

Mechanism of competitive grain growth in a curvilinear channel of crystal-sorter during the orientational solidification of nickel-based heat-resistant alloy

NASA Astrophysics Data System (ADS)

Monastyrskiy, V. P.; Pozdnyakov, A. N.; Ershov, M. Yu.; Monastyrskiy, A. V.

2017-07-01

Using numerical simulation in the ProCAST program complex, the conditions of the solidification of heat-resistant nickel alloy in curvilinear channels of a ceramic mold have been investigated. It has been shown that, in practically important cases, the vector of the temperature gradient is oriented along the axis of the curvilinear channel. In a spiral crystal selector, a cyclic change in the preferred direction of growth occurs because of the cyclic change in the direction of the vector of the temperature gradient. The fact that the vector of the temperature gradient is almost always directed along the axis of the curvilinear channel makes it possible to govern the orientation of the vector of the temperature gradient in space and, therefore, to obtain a grain with the preferred crystallographic orientation. Based on the results of this investigation, a method of the grain selection with a desired azimuthal orientation is proposed.

Sediment transport by runoff on debris-mantled dryland hillslopes

NASA Astrophysics Data System (ADS)

Michaelides, Katerina; Martin, Gareth J.

2012-09-01

Hillslopes supply sediment to river channels, and therefore impact drainage basin functioning and evolution. The relationship between hillslope attributes and sediment flux forms the basis of geomorphic transport laws used to model the long-term topographic evolution of drainage basins, but their specific interactions during individual storm events are not well understood. Runoff-driven erosion of coarse particles, prevalent in dryland environments, presents a particular set of conditions for sediment transport that is poorly resolved in current models. In order to address this gap, we developed a particle-based, force-balance model for sheetwash sediment transport on coarse, debris-mantled hillslopes within a rainfall-runoff model. We use the model to examine how the interplay between hillslope attributes (gradient, length and grain size distribution) and runoff characteristics affects sediment transport, grain-size changes on the hillslope, and sediment supply to the slope base. The relationship between sediment flux and hillslope gradient was found to transition from linear above a threshold to sigmoidal depending on hillslope length, initial grain sizes, and runoff characteristics. Grain sizes supplied to the slope base vary in a complex manner with hillslope attributes but an overall coarsening of the hillslopes is found to occur with increasing gradient, corroborating previous findings from field measurements. Intense, short duration storms result in within-hillslope sediment redistribution and equifinality in sediment supply for different hillslope characteristics, which explain the lack of field evidence for any systematic relationships. Our model findings provide insights into hillslope responses to climatic forcing and have theoretical implications for modeling hillslope evolution in dry lands.

Phytoplankton Diversity and Community Composition along the Estuarine Gradient of a Temperate Macrotidal Ecosystem: Combined Morphological and Molecular Approaches

PubMed Central

Bazin, Pauline; Jouenne, Fabien; Friedl, Thomas; Deton-Cabanillas, Anne-Flore; Le Roy, Bertrand; Véron, Benoît

2014-01-01

Microscopical and molecular analyses were used to investigate the diversity and spatial community structure of spring phytoplankton all along the estuarine gradient in a macrotidal ecosystem, the Baie des Veys (eastern English Channel). Taxa distribution at high tide in the water column appeared to be mainly driven by the tidal force which superimposed on the natural salinity gradient, resulting in a two-layer flow within the channel. Lowest taxa richness and abundance were found in the bay where Teleaulax-like cryptophytes dominated. A shift in species composition occurred towards the mouth of the river, with the diatom Asterionellopsis glacialis dramatically accumulating in the bottom waters of the upstream brackish reach. Small thalassiosiroid diatoms dominated the upper layer river community, where taxa richness was higher. Through the construction of partial 18S rDNA clone libraries, the microeukaryotic diversity was further explored for three samples selected along the surface salinity gradient (freshwater - brackish - marine). Clone libraries revealed a high diversity among heterotrophic and/or small-sized protists which were undetected by microscopy. Among them, a rich variety of Chrysophyceae and other lineages (e.g. novel marine stramenopiles) are reported here for the first time in this transition area. However, conventional microscopy remains more efficient in revealing the high diversity of phototrophic taxa, low in abundances but morphologically distinct, that is overlooked by the molecular approach. The differences between microscopical and molecular analyses and their limitations are discussed here, pointing out the complementarities of both approaches, for a thorough phytoplankton community description. PMID:24718653

Conditions for generation of fire-related debris flows, Capulin Canyon, New Mexico

USGS Publications Warehouse

Cannon, S.H.; Reneau, Steven L.

2000-01-01

Comparison of the responses of three drainage basins burned by the Dome fire of 1996 in New Mexico is used to identify the hillslope, channel and fire characteristics that indicate a susceptibility specifically to wildfire-related debris flow. Summer thunderstorms generated three distinct erosive responses from each of three basins. The Capulin Canyon basin showed widespread erosive sheetwash and rilling from hillslopes, and severe flooding occurred in the channel; the North Tributary basin exhibited extensive erosion of the mineral soil to a depth of 5 cm and downslope movement of up to boulder-sized material, and at least one debris flow occurred in the channel; negligible surface runoff was observed in the South Tributary basin. The negligible surface runoff observed in the South Tributary basin is attributed to the limited extent and severity of the fire in that basin. The factors that best distinguish between debris-flow producing and flood-producing drainages are drainage basin morphology and lithology. A rugged drainage basin morphology, an average 12 per cent channel gradient, and steep, rough hillslopes coupled with colluvium and soil weathered from volcaniclastic and volcanic rocks promoted the generation of debris flows. A less rugged basin morphology, an average gradient of 5 per cent, and long, smooth slopes mantled with pumice promoted flooding. Flood and debris-flow responses were produced without the presence of water-repellent soils. The continuity and severity of the burn mosaic, the condition of the riparian vegetation, the condition of the fibrous root mat, accumulations of dry ravel and colluvial material in the channel and on hillslopes, and past debris-flow activity, appeared to have little bearing on the distinctive responses of the basins. Published in 2000 by John Wiley and Sons, Ltd.

GLORIA mosaic of west coast U. S. Exclusive Economic Zone, southern sector

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gardner, J.V.; Edwards, B.D.; Field, M.E.

1986-05-01

The long-range side-scan sonar system GLORIA was used to produce digitally enhanced mosaics of the sea floor of the entire US Exclusive Economic Zone. The data resolution, about 50 x 50 m, provides a mesoscale reconnaissance that reveals the continuity and extent of bottom features, some of which were previously unrecognized. The transform continental margin from the Mendocino Escarpment to the US-Mexican border is cut by numerous submarine canyons and gullies of varied size and complexity. The number, size, and extent of gullies appear directly related to the underlying bed-rock geology. Surprisingly, relatively few slumps and slump scarps are apparent.more » Submarine fans characterize the basins adjacent to the margin in this sector. The fans vary in size and complexity: relatively small, immature fans of the borderland basins, such as Redondo and Hueneme; fans intermediate in size and age, such as Arguello and Farallon; and large, relatively mature fans, such as Monterey and Delgada. Most fans have well-defined depositional lobes at the distal reach of a single channel. Distributary channels are not apparent on all fans, and on some (e.g., Monterey Fan), the single channel can be seen in seismic reflection profiles to have originated on or close to the basement, directly below its present position. The older depositional lobes that have been identified on the fan systems are adjacent to the present main channel, which implies that channel avulsion is not always a process that accompanies fan growth. Seamounts are prominent features in the region, ranging in number from hundreds in the Baja Seamount province to tens in the region west of San Francisco. The gradient of increasing numbers of exposed seamounts and volcanic ridges from north to south is a direct result of decreasing sediment supply from the continent to the south.« less

Lateral transport of solutes in microfluidic channels using electrochemically generated gradients in redox-active surfactants.

PubMed

Liu, Xiaoyang; Abbott, Nicholas L

2011-04-15

We report principles for a continuous flow process that can separate solutes based on a driving force for selective transport that is generated by a lateral concentration gradient of a redox-active surfactant across a microfluidic channel. Microfluidic channels fabricated with gold electrodes lining each vertical wall were used to electrochemically generate concentration gradients of the redox-active surfactant 11-ferrocenylundecyl-trimethylammonium bromide (FTMA) in a direction perpendicular to the flow. The interactions of three solutes (a hydrophobic dye, 1-phenylazo-2-naphthylamine (yellow AB), an amphiphilic molecule, 2-(4,4-difluoro-5,7-dimethyl-4-bora-3a,4a-diaza-s-indacene-3-pentanoyl)-1-hexadecanoyl-sn-glycero-3-phosphocholine (BODIPY C(5)-HPC), and an organic salt, 1-methylpyridinium-3-sulfonate (MPS)) with the lateral gradients in surfactant/micelle concentration were shown to drive the formation of solute-specific concentration gradients. Two distinct physical mechanisms were identified to lead to the solute concentration gradients: solubilization of solutes by micelles and differential adsorption of the solutes onto the walls of the microchannels in the presence of the surfactant concentration gradient. These two mechanisms were used to demonstrate delipidation of a mixture of BODIPY C(5)-HPC (lipid) and MPS and purification of BODIPY C(5)-HPC from a mixture of BODIPY C(5)-HPC and yellow AB. Overall, the results of this study demonstrate that lateral concentration gradients of redox-active surfactants formed within microfluidic channels can be used to transport solutes across the microfluidic channels in a solute-dependent manner. The approach employs electrical potentials (<1 V) that are sufficiently small to avoid electrolysis of water, can be performed in solutions having high ionic strength (>0.1M), and offers the basis of continuous processes for the purification or separation of solutes in microscale systems. © 2011 American Chemical Society

Flow convergence caused by a salinity minimum in a tidal channel

USGS Publications Warehouse

Warner, John C.; Schoellhamer, David H.; Burau, Jon R.; Schladow, S. Geoffrey

2006-01-01

Residence times of dissolved substances and sedimentation rates in tidal channels are affected by residual (tidally averaged) circulation patterns. One influence on these circulation patterns is the longitudinal density gradient. In most estuaries the longitudinal density gradient typically maintains a constant direction. However, a junction of tidal channels can create a local reversal (change in sign) of the density gradient. This can occur due to a difference in the phase of tidal currents in each channel. In San Francisco Bay, the phasing of the currents at the junction of Mare Island Strait and Carquinez Strait produces a local salinity minimum in Mare Island Strait. At the location of a local salinity minimum the longitudinal density gradient reverses direction. This paper presents four numerical models that were used to investigate the circulation caused by the salinity minimum: (1) A simple one-dimensional (1D) finite difference model demonstrates that a local salinity minimum is advected into Mare Island Strait from the junction with Carquinez Strait during flood tide. (2) A three-dimensional (3D) hydrodynamic finite element model is used to compute the tidally averaged circulation in a channel that contains a salinity minimum (a change in the sign of the longitudinal density gradient) and compares that to a channel that contains a longitudinal density gradient in a constant direction. The tidally averaged circulation produced by the salinity minimum is characterized by converging flow at the bed and diverging flow at the surface, whereas the circulation produced by the constant direction gradient is characterized by converging flow at the bed and downstream surface currents. These velocity fields are used to drive both a particle tracking and a sediment transport model. (3) A particle tracking model demonstrates a 30 percent increase in the residence time of neutrally buoyant particles transported through the salinity minimum, as compared to transport through a constant direction density gradient. (4) A sediment transport model demonstrates increased deposition at the near-bed null point of the salinity minimum, as compared to the constant direction gradient null point. These results are corroborated by historically noted large sedimentation rates and a local maximum of selenium accumulation in clams at the null point in Mare Island Strait.

Generation and precise control of dynamic biochemical gradients for cellular assays

NASA Astrophysics Data System (ADS)

Saka, Yasushi; MacPherson, Murray; Giuraniuc, Claudiu V.

2017-03-01

Spatial gradients of diffusible signalling molecules play crucial roles in controlling diverse cellular behaviour such as cell differentiation, tissue patterning and chemotaxis. In this paper, we report the design and testing of a microfluidic device for diffusion-based gradient generation for cellular assays. A unique channel design of the device eliminates cross-flow between the source and sink channels, thereby stabilizing gradients by passive diffusion. The platform also enables quick and flexible control of chemical concentration that makes highly dynamic gradients in diffusion chambers. A model with the first approximation of diffusion and surface adsorption of molecules recapitulates the experimentally observed gradients. Budding yeast cells cultured in a gradient of a chemical inducer expressed a reporter fluorescence protein in a concentration-dependent manner. This microfluidic platform serves as a versatile prototype applicable to a broad range of biomedical investigations.

Beaver dams and channel sediment dynamics on Odell Creek, Centennial Valley, Montana, USA

NASA Astrophysics Data System (ADS)

Levine, Rebekah; Meyer, Grant A.

2014-01-01

Beaver dams in streams are generally considered to increase bed elevation through in-channel sediment storage, thus, reintroductions of beaver are increasingly employed as a restoration tool to repair incised stream channels. Here we consider hydrologic and geomorphic characteristics of the study stream in relation to in-channel sediment storage promoted by beaver dams. We also document the persistence of sediment in the channel following breaching of dams. Nine reaches, containing 46 cross-sections, were investigated on Odell Creek at Red Rock Lakes National Wildlife Refuge, Centennial Valley, Montana. Odell Creek has a snowmelt-dominated hydrograph and peak flows between 2 and 10 m3 s- 1. Odell Creek flows down a fluvial fan with a decreasing gradient (0.018-0.004), but is confined between terraces along most of its length, and displays a mostly single-thread, variably sinuous channel. The study reaches represent the overall downstream decrease in gradient and sediment size, and include three stages of beaver damming: (1) active; (2) built and breached in the last decade; and (3) undammed. In-channel sediment characteristics and storage were investigated using pebble counts, fine-sediment depth measurements, sediment mapping and surveys of dam breaches. Upstream of dams, deposition of fine (≤ 2 mm) sediment is promoted by reduced water surface slope, shear stress and velocity, with volumes ranging from 48 to 182 m3. High flows, however, can readily transport suspended sediment over active dams. Variations in bed-sediment texture and channel morphology associated with active dams create substantial discontinuities in downstream trends and add to overall channel heterogeneity. Observations of abandoned dam sites and dam breaches revealed that most sediment stored above beaver dams is quickly evacuated following a breach. Nonetheless, dam remnants trap some sediment, promote meandering and facilitate floodplain development. Persistence of beaver dam sediment within the main channel on Odell Creek is limited by frequent breaching (< 1-5 years), so in-channel sediment storage because of damming has not caused measurable channel aggradation over the study period. Enhanced overbank flow by dams, however, likely increases fine-grained floodplain sedimentation and riparian habitat. Contrasts between beaver-damming impacts on Odell Creek and other stream systems of different scales suggest a high sensitivity to hydrologic, geomorphic, and environmental controls, complicating predictions of the longer-term effects of beaver restoration.

Ion Trapping with Fast-Response Ion-Selective Microelectrodes Enhances Detection of Extracellular Ion Channel Gradients

PubMed Central

Messerli, Mark A.; Collis, Leon P.; Smith, Peter J.S.

2009-01-01

Previously, functional mapping of channels has been achieved by measuring the passage of net charge and of specific ions with electrophysiological and intracellular fluorescence imaging techniques. However, functional mapping of ion channels using extracellular ion-selective microelectrodes has distinct advantages over the former methods. We have developed this method through measurement of extracellular K+ gradients caused by efflux through Ca2+-activated K+ channels expressed in Chinese hamster ovary cells. We report that electrodes constructed with short columns of a mechanically stable K+-selective liquid membrane respond quickly and measure changes in local [K+] consistent with a diffusion model. When used in close proximity to the plasma membrane (<4 μm), the ISMs pose a barrier to simple diffusion, creating an ion trap. The ion trap amplifies the local change in [K+] without dramatically changing the rise or fall time of the [K+] profile. Measurement of extracellular K+ gradients from activated rSlo channels shows that rapid events, 10–55 ms, can be characterized. This method provides a noninvasive means for functional mapping of channel location and density as well as for characterizing the properties of ion channels in the plasma membrane. PMID:19217875

Role of Unchannelized Flow in Determining Bifurcation Angle in Distributary Channel Networks

NASA Astrophysics Data System (ADS)

Coffey, T.

2016-12-01

Distributary channel bifurcations on river deltas are important features in both modern systems, where the channels control water, sediment, and nutrient routing, and in ancient deltas, where the channel networks can dictate large-scale stratigraphic heterogeneity. Geometric features of distributary channels, such as channel dimensions and network structure, have long been thought to be defined by factors such as flow velocity, grain size, or channel aspect ratio where the channel enters the basin. We use theory originally developed for tributary networks fed by groundwater seepage to understand the dynamics of distributary channel bifurcations. Interestingly, bifurcations in groundwater-fed tributary networks have been shown to evolve dependent on the diffusive flow patterns around the channel network. These networks possess a characteristic bifurcation angle of 72°, due to Laplacian flow (gradient2h2=0, where h is water surface elevation) in the groundwater flow field near tributary channel tips. We develop and test the hypothesis that bifurcation angles in distributary channel networks are likewise dictated by the external flow field, in this case the shallow surface water surrounding the subaqueous portion of distributary channel bifurcations in a deltaic setting. We measured 130 unique distributary channel bifurcations in a single experimental delta and in 10 natural deltas, yielding a mean angle of 70.35°±2.59° (95% confidence interval), in line with the theoretical prediction. This similarity implies that flow outside of the distributary channel network is also Laplacian, which we use scaling arguments to justify. We conclude that the dynamics of the unchannelized flow control bifurcation formation in distributary networks.

Photographic guidance for selecting flow resistance coefficients in high-gradient channels

Treesearch

Steven E. Yochum; Francesco Comiti; Ellen Wohl; Gabrielle C. L. David; Luca Mao

2014-01-01

Photographic guidance is presented to assist with the estimation of Manning’s n and Darcy-Weisbach f in high-gradient plane-bed, step-pool, and cascade channels. Reaches both with and without instream wood are included. These coefficients are necessary for the estimation of reachaverage velocity, energy loss, and...

Membraneless seawater desalination

DOEpatents

Crooks, Richard A.; Knust, Kyle N.; Perdue, Robbyn K.

2018-04-03

Disclosed are microfluidic devices and systems for the desalination of water. The devices and systems can include an electrode configured to generate an electric field gradient in proximity to an intersection formed by the divergence of two microfluidic channels from an inlet channel. Under an applied bias and in the presence of a pressure driven flow of saltwater, the electric field gradient can preferentially direct ions in saltwater into one of the diverging microfluidic channels, while desalted water flows into second diverging channel. Also provided are methods of using the devices and systems described herein to decrease the salinity of water.

Impact of induced magnetic field on synovial fluid with peristaltic flow in an asymmetric channel

NASA Astrophysics Data System (ADS)

Afsar Khan, Ambreen; Farooq, Arfa; Vafai, Kambiz

2018-01-01

In this paper, we have worked for the impact of induced magnetic field on peristaltic motion of a non-Newtonian, incompressible, synovial fluid in an asymmetric channel. We have solved the problem for two models, Model-1 which behaves as shear thinning fluid and Model-2 which behaves as shear thickening fluid. The problem is solved by using modified Adomian Decomposition method. It has seen that two models behave quite opposite to each other for some parameters. The impact of various parameters on u, dp/dx, Δp and induced magnetic field bx have been studied graphically. The significant findings of this study is that the size of the trapped bolus and the pressure gradient increases by increasing M for both models.

Gradiently Polymerized Solid Electrolyte Meets with Micro/Nano-Structured Cathode Array.

PubMed

Dong, Wei; Zeng, Xian-Xiang; Zhang, Xu-Dong; Li, Jin-Yi; Shi, Ji-Lei; Xiao, Yao; Shi, Yang; Wen, Rui; Yin, Ya-Xia; Wang, Tai-Shan; Wang, Chun-Ru; Guo, Yu-Guo

2018-05-02

The poor contact between the solid-state electrolyte and cathode materials leads to high interfacial resistance, severely limiting the rate capability of solid Li metal batteries. Herein, an integrative battery design is introduced with a gradiently polymerized solid electrolyte (GPSE), a micro-channel current collector array and nano-sized cathode particles. In-situ formed GPSE encapsulates cathode nanoparticles in the micro-channel with ductile inclusions to lower interfacial impedance, and the stiff surface layer of GPSE toward anode suppresses Li dendrites growth. Li metal batteries based on GPSE and Li-free hydrogenated V2O5 (V2O5-H) cathode exhibit an outstanding high-rate response of up to 5 C (the capacity ratio of 5 C / 1 C is 90.3%) and an ultralow capacity fade rate of 0.07% per cycle over 300 cycles. Other Li-containing cathodes as LiFePO4 and LiNi0.5Mn0.3Co0.2O2 can also operate effectively at 5 C and 2 C rate, respectively. Such an ingenious design may provide new insights into other solid metal batteries through interfacial engineering manipulation at micro and nano level.

Nanoscale relaxation oscillator

DOEpatents

Zettl, Alexander K.; Regan, Brian C.; Aloni, Shaul

2009-04-07

A nanoscale oscillation device is disclosed, wherein two nanoscale droplets are altered in size by mass transport, then contact each other and merge through surface tension. The device may also comprise a channel having an actuator responsive to mechanical oscillation caused by expansion and contraction of the droplets. It further has a structure for delivering atoms between droplets, wherein the droplets are nanoparticles. Provided are a first particle and a second particle on the channel member, both being made of a chargeable material, the second particle contacting the actuator portion; and electrodes connected to the channel member for delivering a potential gradient across the channel and traversing the first and second particles. The particles are spaced apart a specified distance so that atoms from one particle are delivered to the other particle by mass transport in response to the potential (e.g. voltage potential) and the first and second particles are liquid and touch at a predetermined point of growth, thereby causing merging of the second particle into the first particle by surface tension forces and reverse movement of the actuator. In a preferred embodiment, the channel comprises a carbon nanotube and the droplets comprise metal nanoparticles, e.g. indium, which is readily made liquid.

WinXSPRO, a channel cross section analyzer, User's Manual, Version 3.0

Treesearch

Thomas Hardy; Palavi Panja; Dean Mathias

2005-01-01

WinXSPRO is an interactive Windows software package designed to analyze stream channel cross section data for geometric, hydraulic, and sediment transport parameters. WinXSPRO was specifically developed for use in high-gradient streams (gradient > 0.01) and supports four alternative resistance equations for computing boundary roughness and resistance to flow. Cross...

Temperature gradient scale length measurement: A high accuracy application of electron cyclotron emission without calibration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Houshmandyar, S., E-mail: houshmandyar@austin.utexas.edu; Phillips, P. E.; Rowan, W. L.

2016-11-15

Calibration is a crucial procedure in electron temperature (T{sub e}) inference from a typical electron cyclotron emission (ECE) diagnostic on tokamaks. Although the calibration provides an important multiplying factor for an individual ECE channel, the parameter ΔT{sub e}/T{sub e} is independent of any calibration. Since an ECE channel measures the cyclotron emission for a particular flux surface, a non-perturbing change in toroidal magnetic field changes the view of that channel. Hence the calibration-free parameter is a measure of T{sub e} gradient. B{sub T}-jog technique is presented here which employs the parameter and the raw ECE signals for direct measurement ofmore » electron temperature gradient scale length.« less

Lateral baroclinic forcing enhances sediment transport from shallows to channel in an estuary

USGS Publications Warehouse

Lacy, Jessica R.; Gladding, Steve; Brand, Andreas; Collignon, Audric; Stacey, Mark

2014-01-01

We investigate the dynamics governing exchange of sediment between estuarine shallows and the channel based on field measurements at eight stations spanning the interface between the channel and the extensive eastern shoals of South San Francisco Bay. The study site is characterized by longitudinally homogeneous bathymetry and a straight channel, with friction more important than the Coriolis forcing. Data were collected for 3 weeks in the winter and 4 weeks in the late summer of 2009, to capture a range of hydrologic and meteorologic conditions. The greatest sediment transport from shallows to channel occurred during a pair of strong, late-summer wind events, with westerly winds exceeding 10 m/s for more than 24 h. A combination of wind-driven barotropic return flow and lateral baroclinic circulation caused the transport. The lateral density gradient was produced by differences in temperature and suspended sediment concentration (SSC). During the wind events, SSC-induced vertical density stratification limited turbulent mixing at slack tides in the shallows, increasing the potential for two-layer exchange. The temperature- and SSC-induced lateral density gradient was comparable in strength to salinity-induced gradients in South Bay produced by seasonal freshwater inflows, but shorter in duration. In the absence of a lateral density gradient, suspended sediment flux at the channel slope was directed towards the shallows, both in winter and during summer sea breeze conditions, indicating the importance of baroclinically driven exchange to supply of sediment from the shallows to the channel in South San Francisco Bay and systems with similar bathymetry.

Constant fields and constant gradients in open ionic channels.

PubMed Central

Chen, D P; Barcilon, V; Eisenberg, R S

1992-01-01

Ions enter cells through pores in proteins that are holes in dielectrics. The energy of interaction between ion and charge induced on the dielectric is many kT, and so the dielectric properties of channel and pore are important. We describe ionic movement by (three-dimensional) Nemst-Planck equations (including flux and net charge). Potential is described by Poisson's equation in the pore and Laplace's equation in the channel wall, allowing induced but not permanent charge. Asymptotic expansions are constructed exploiting the long narrow shape of the pore and the relatively high dielectric constant of the pore's contents. The resulting one-dimensional equations can be integrated numerically; they can be analyzed when channels are short or long (compared with the Debye length). Traditional constant field equations are derived if the induced charge is small, e.g., if the channel is short or if the total concentration gradient is zero. A constant gradient of concentration is derived if the channel is long. Plots directly comparable to experiments are given of current vs voltage, reversal potential vs. concentration, and slope conductance vs. concentration. This dielectric theory can easily be tested: its parameters can be determined by traditional constant field measurements. The dielectric theory then predicts current-voltage relations quite different from constant field, usually more linear, when gradients of total concentration are imposed. Numerical analysis shows that the interaction of ion and channel can be described by a mean potential if, but only if, the induced charge is negligible, that is to say, the electric field is spatially constant. Images FIGURE 1 PMID:1376159

Applying the J-optimal channelized quadratic observer to SPECT myocardial perfusion defect detection

NASA Astrophysics Data System (ADS)

Kupinski, Meredith K.; Clarkson, Eric; Ghaly, Michael; Frey, Eric C.

2016-03-01

To evaluate performance on a perfusion defect detection task from 540 image pairs of myocardial perfusion SPECT image data we apply the J-optimal channelized quadratic observer (J-CQO). We compare AUC values of the linear Hotelling observer and J-CQO when the defect location is fixed and when it occurs in one of two locations. As expected, when the location is fixed a single channels maximizes AUC; location variability requires multiple channels to maximize the AUC. The AUC is estimated from both the projection data and reconstructed images. J-CQO is quadratic since it uses the first- and second- order statistics of the image data from both classes. The linear data reduction by the channels is described by an L x M channel matrix and in prior work we introduced an iterative gradient-based method for calculating the channel matrix. The dimensionality reduction from M measurements to L channels yields better estimates of these sample statistics from smaller sample sizes, and since the channelized covariance matrix is L x L instead of M x M, the matrix inverse is easier to compute. The novelty of our approach is the use of Jeffrey's divergence (J) as the figure of merit (FOM) for optimizing the channel matrix. We previously showed that the J-optimal channels are also the optimum channels for the AUC and the Bhattacharyya distance when the channel outputs are Gaussian distributed with equal means. This work evaluates the use of J as a surrogate FOM (SFOM) for AUC when these statistical conditions are not satisfied.

Monitoring bedload entrainment and transport in snowmelt-dominated forest streams of the Columbia Mountains, Canada

NASA Astrophysics Data System (ADS)

Green, Kim; Brardinoni, Francesco; Alila, Younes

2014-05-01

We monitor bedload transport and water discharge at six stations in two forested headwater streams of the Columbia Mountains, Canada. The monitoring network of sediment traps is designed to examine the effects of channel bed texture, and the influence of alluvial (i.e., step pools, and riffle pools) and semi-alluvial morphologies (i.e., boulder cascades and forced step pools) on bedload entrainment and transport. Results suggest that patterns of bedload entrainment are influenced by flow resistance while the value of the critical dimensionless shear stress for mobilization of the surface D50 varies due to channel gradient, grain sheltering effects and, to a less extent, flow resistance. Regardless of channel morphology we observe: (i) equal-threshold entrainment for all mobile grains in channels with high grain and/or form resistance; and (ii) initial equal-threshold entrainment of calibers ≤ 22mm, and subsequent size-selective entrainment of coarser material in channels with low form resistance (e.g. riffle pool). Scaled fractional analysis reveals that in reaches with high flow resistance most bedload transport occurs in partial mobility fashion relative to the available bed material and that only material finer than 16mm attains full mobility during over-bank flows. Equal mobility transport for a wider range of grain sizes is achieved in reaches with reduced flow resistance. Evaluation of bedload rating curves across sites identifies that grain effects predominate with respect to bedload flux whereas morphological effects (i.e. form resistance) play a secondary role. Application of selected empirical formulae developed in steep alpine channels present variable success in predicting transport rates in the study reaches.

Long river profiles, tectonism, and eustasy: A guide to interpreting fluvial terraces

NASA Technical Reports Server (NTRS)

Merritts, Dorothy J.; Vincent, Kirk R.; Wohl, Ellen E.

1994-01-01

Along three rivers at the Mendocino triple junction, northern California, strath, cut, and fill terraces have formed in response to tectonic and eustatic processes. Detailed surveying and radiometric dating at multiple sites indicate that lower reaches of the rivers are dominated by the effects of oscillating sea level, primarily aggradation and formation of fill terraces during sea level high stands, alternating with deep incision during low stands. A eustasy-driven depositional wedge extends tens of kilometers upstream on all rivers (tapering to zero thickness). This distance is greater than expected from studies of the effects of check dams on much smaller streams elsewhere, due in part to the large size of these rivers. However, the change in gradient is nearly identical to other base level rise studies: the depositional gradient is about half that of the original channel. Middle to upper reaches of each river are dominated by the effects of long-term uplift, primarily lateral and vertical erosion and formation of steep, unpaired strath terraces exposed only upstream of the depositional wedge. Vertical incision at a rate similar to that of uplift has occurred even during the present sea level high stand along rivers with highest uplift rates. Strath terraces have steeper gradients than the modern channel bed and do not merge with marine terraces at the river mouth; consequently, they cannot be used to determine altitudes of sea level high stands. Strath formation is a continuous process of response to long-term uplift, and its occurrence varies spatially along a river depending on stream power, and hence position, upstream. Strath terraces are found only along certain parts of a coastal stream: upstream of the aggradational effects of oscillating sea level, and far enough downstream that stream power is in excess of that needed to transport the prevailing sediment load. For a given size river, the greater the uplift rate, the greater the rate of vertical incision and, consequently, the less the likelihood of strath terrace formation and preservation.

Ion channels versus ion pumps: the principal difference, in principle.

PubMed

Gadsby, David C

2009-05-01

The incessant traffic of ions across cell membranes is controlled by two kinds of border guards: ion channels and ion pumps. Open channels let selected ions diffuse rapidly down electrical and concentration gradients, whereas ion pumps labour tirelessly to maintain the gradients by consuming energy to slowly move ions thermodynamically uphill. Because of the diametrically opposed tasks and the divergent speeds of channels and pumps, they have traditionally been viewed as completely different entities, as alike as chalk and cheese. But new structural and mechanistic information about both of these classes of molecular machines challenges this comfortable separation and forces its re-evaluation.

Ultra-high gradient channeling acceleration in nanostructures: Design/progress of proof-of-concept (POC) experiments

NASA Astrophysics Data System (ADS)

Shin, Y. M.; Green, A.; Lumpkin, A. H.; Thurman-Keup, R. M.; Shiltsev, V.; Zhang, X.; Farinella, D. M.-A.; Taborek, P.; Tajima, T.; Wheeler, J. A.; Mourou, G.

2017-03-01

A short bunch of relativistic particles, or a short-pulse laser, perturb the density state of conduction electrons in a solid crystal and excite wakefields along atomic lattices in a crystal. Under a coupling condition between a driver and plasma, the wakes, if excited, can accelerate channeling particles with TeV/m acceleration gradients [1], in principle, since the density of charge carriers (conduction electrons) in solids n0 = 1020 - 1023 cm-3 is significantly higher than what was considered above in gaseous plasma. Nanostructures have some advantages over crystals for channeling applications of high power beams. The de-channeling rate can be reduced and the beam acceptance increased by the large size of the channels. For beam-driven acceleration, a bunch length with a sufficient charge density would need to be in the range of the plasma wavelength to properly excite plasma wakefields, and channeled particle acceleration with the wakefields must occur before the ions in the lattices move beyond the restoring threshold. In the case of the excitation by short laser pulses, the dephasing length is appreciably increased with the larger channel, which enables channeled particles to gain sufficient amounts of energy. This paper describes simulation analyses on beam- and laser (X-ray)-driven accelerations in effective nanotube models obtained from the Vsim and EPOCH codes. Experimental setups to detect wakefields are also outlined with accelerator facilities at Fermilab and Northern Illinois University (NIU). In the FAST facility, the electron beamline was successfully commissioned at 50 MeV, and it is being upgraded toward higher energies for electron accelerator R&D. The 50 MeV injector beamline of the facility is used for X-ray crystal-channeling radiation with a diamond target. It has been proposed to utilize the same diamond crystal for a channeling acceleration proof-of-concept (POC). Another POC experiment is also designed for the NIU accelerator lab with time-resolved electron diffraction. Recently, a stable generation of single-cycle laser pulses with tens of Petawatt power based on the thin film compression (TFC) technique has been investigated for target normal sheath acceleration (TNSA) and radiation pressure acceleration (RPA). The experimental plan with a nanometer foil is discussed with an available test facility such as Extreme Light Infrastructure - Nuclear Physics (ELI-NP).

An in vitro hepatic zonation model with a continuous oxygen gradient in a microdevice.

PubMed

Sato, Asako; Kadokura, Kanae; Uchida, Hideyuki; Tsukada, Kosuke

2014-10-31

In a hepatic lobule, different sets of metabolic enzymes are expressed in the periportal (PP) and pericentral (PC) regions, forming a functional zonation, and the oxygen gradient is considered a determinant of zone formation. It is desirable to reproduce lobular microenvironment in vitro, but incubation of primary hepatocytes in conventional culture dishes has been limited at fixed oxygen concentrations due to technical difficulties. We designed a cell culture microdevice with an oxygen gradient to reproduce the hepatic microenvironment in vitro. The oxygen gradient during cell culture was monitored using a laser-assisted phosphorescence quenching method, and the cellular oxygen consumption rate could be estimated from changes in the gradient. Culture medium was continuously exchanged through microchannels installed in the device to maintain the oxygen gradient for a long term without transient hyper-oxygenation. The oxygen consumption rates of hepatocytes at 70.0mmHg and 31.4mmHg of partial oxygen pressure, which correspond to PP and PC regions in the microdevice, were 3.67×10(-10) and 3.15×10(-10)mol/s/10(6) cells, respectively. Antimycin A changed the oxygen gradient profile, indicating that cellular respiration can be estimated during cell culture. RT-PCR analysis of hepatocytes cultured under the oxygen gradient showed that mRNA expression of PEPCK and GK significantly increased in culture areas corresponding to PP and PC regions, respectively. These results indicate that the developed microdevice can reproduce the hepatic lobular microenvironment. The oxygen gradient in the microdevice can be closely controlled by changing the sizes of gas channels and the ambient oxygen concentration around the device; therefore, it could be expected to mimic the oxygen gradient of various organs, and it may be applicable to other pathological models. Copyright © 2014 Elsevier Inc. All rights reserved.

Electric Field-Controlled Ion Transport In TiO2 Nanochannel.

PubMed

Li, Dan; Jing, Wenheng; Li, Shuaiqiang; Shen, Hao; Xing, Weihong

2015-06-03

On the basis of biological ion channels, we constructed TiO2 membranes with rigid channels of 2.3 nm to mimic biomembranes with flexible channels; an external electric field was employed to regulate ion transport in the confined channels at a high ionic strength in the absence of electrical double layer overlap. Results show that transport rates for both Na+ and Mg2+ were decreased irrespective of the direction of the electric field. Furthermore, a voltage-gated selective ion channel was formed, the Mg2+ channel closed at -2 V, and a reversed relative electric field gradient was at the same order of the concentration gradient, whereas the Na+ with smaller Stokes radius and lower valence was less sensitive to the electric field and thus preferentially occupied and passed the channel. Thus, when an external electric field is applied, membranes with larger nanochannels have promising applications in selective separation of mixture salts at a high concentration.

Feedbacks Between Channel Adjustment, Sediment Calibre and Landscape Dynamics in Tectonically Perturbed Landscapes (Invited)

NASA Astrophysics Data System (ADS)

Attal, M.; Cowie, P. A.; Whittaker, A. C.; Tucker, G. E.; Mudd, S. M.; Hurst, M. D.

2010-12-01

Knowledge of the coupling between channel geometry and sediment input to rivers is central to understanding the mechanisms and timescales over which landscapes respond to a tectonic perturbation. Here, we document changes to channel geometry and sediment calibre in catchments experiencing a well-constrained increase in relative uplift rate in the Central Apennines (Italy) and the Sierra Nevada (California). In both landscapes, channels and hillslopes steepen and knickpoints propagate upstream through the catchments, leading to the formation of a break in both hillslope and channel gradient that separates the steepened landscape from lower relief topography which has not yet responded to the change in uplift rate. Downstream of this break in slope, channels narrow markedly as river gradient increases. In addition, they are supplied with coarser sediment from the steepened hillslopes, in particular when sediment is supplied via landslides and debris fans. In Italy, channel narrowing can be explained using the equation proposed by Finnegan et al. [2005]: W = kQ3/8S-3/16, where W is channel width, k is a constant, Q is river discharge and S is channel slope. However, to model our field data, the prefactor k must be strongly dependent on uplift rate: the higher the uplift rate, the smaller the prefactor k. Using the Channel-Hillslope Integrated Landscape Development (CHILD) model, we show that the location of the main break in slope along the river profiles in Italy (in terms of height and along stream distance) can be fitted using a detachment-limited model with dynamic channel adjustment (equation above), k dependent on uplift rate and a threshold for erosion. A threshold corresponding to the shear stress required to entrain the median grain size of the sediment along the steepened reaches of the channels best fits the data. Our modelling results show that the response time of the landscape in this setting is strongly dependent on relative uplift rate, since knickpoint retreat rate in the detachment-limited model is a function of channel width and that the higher the relative uplift rate, the narrower the river. In a catchment uplifted at 1.5 mm/yr, knickpoint retreat rate can be up to 3 times higher than in a catchment uplifted at 0.25 mm/yr. This result is in agreement with measurements of knickpoint retreat rates using field data in the Apennines [Whittaker et al., 2008]. Steepened hillslopes along the rapidly incising Feather River, Sierra Nevada, California

Spatial distributions of Kv4 channels and KChip2 isoforms in the murine heart based on laser capture microdissection.

PubMed

Teutsch, Christine; Kondo, Richard P; Dederko, Dorothy A; Chrast, Jacqueline; Chien, Kenneth R; Giles, Wayne R

2007-03-01

Regional differences in repolarizing K(+) current densities and expression levels of their molecular components are important for coordinating the pattern of electrical excitation and repolarization of the heart. The small size of hearts from mice may obscure these interventricular and/or transmural expression differences of K(+) channels. We have examined this possibility in adult mouse ventricle using a technology that provides very high spatial resolution of tissue collection. Conventional manual dissection and laser capture microdissection (LCM) were utilized to dissect tissue from distinct ventricular regions. RNA was isolated from epicardial, mid-myocardial and endocardial layers of both the right and left ventricles. Real-time RT-PCR was used to quantify the transcript expression in these different regions. LCM revealed significant interventricular and transmural gradients for both Kv4.2 and the alpha-subunit of KChIP2. The expression profile of a second K(+) channel transcript, Kir2.1, which is responsible for the inwardly rectifying K(+) current I(k1), showed no interventricular or transmural gradients and therefore served as a negative control. Our findings are in contrast to previous reports of a relatively uniform left ventricular transmural pattern of expression of Kv4.2, Kv4.3 and KChIP2 in adult mouse heart, which appear to be different than that in larger mammals. Specifically, our results demonstrate significant epi- to endocardial differences in the patterns of expression of both Kv4.2 and KChIP2.

Steering of aggregating magnetic microparticles using propulsion gradients coils in an MRI Scanner.

PubMed

Mathieu, Jean-Baptiste; Martel, Sylvain

2010-05-01

Upgraded gradient coils can effectively enhance the MRI steering of magnetic microparticles in a branching channel. Applications of this method include MRI targeting of magnetic embolization agents for oncologic therapy. A magnetic suspension of Fe(3)O(4) magnetic particles was injected inside a y-shaped microfluidic channel. Magnetic gradients of 0, 50, 100, 200, and 400 mT/m were applied to the magnetic particles perpendicularly to the flow by a custom-built gradient coil inside a 1.5-T MRI scanner. Measurement of the steering ratio was performed both by video analyses and quantification of the mass of the particles collected at each outlet of the microfluidic channel, using atomic absorption spectroscopy. Magnetic particles steering ratios of 0.99 and 0.75 were reached with 400 mT/m gradient amplitude and measured by video analyses and atomic absorption spectroscopy, respectively. Experimental data shows that the steering ratio increases with higher magnetic gradients. Moreover, theory suggests that larger particles (or aggregates), higher magnetizations, and lower flows can also be used to improve the steering ratio. The technological limitation of the approach is that an MRI gradient amplitude increase to a few hundred milliteslas per meter is needed. A simple analytical method based on magnetophoretic velocity predictions and geometric considerations is proposed for steering ratio calculation. (c) 2010 Wiley-Liss, Inc.

Channel response to sediment release: insights from a paired analysis of dam removal

USGS Publications Warehouse

Collins, Mathias J.; Snyder, Noah P.; Boardman, Graham; Banks, William S.; Andrews, Mary; Baker, Matthew E.; Conlon, Maricate; Gellis, Allen; McClain, Serena; Miller, Andrew; Wilcock, Peter

2017-01-01

Dam removals with unmanaged sediment releases are good opportunities to learn about channel response to abruptly increased bed material supply. Understanding these events is important because they affect aquatic habitats and human uses of floodplains. A longstanding paradigm in geomorphology holds that response rates to landscape disturbance exponentially decay through time. However, a previous study of the Merrimack Village Dam (MVD) removal on the Souhegan River in New Hampshire, USA, showed that an exponential function poorly described the early geomorphic response. Erosion of impounded sediments there was two-phased. We had an opportunity to quantitatively test the two-phase response model proposed for MVD by extending the record there and comparing it with data from the Simkins Dam removal on the Patapsco River in Maryland, USA. The watershed sizes are the same order of magnitude (102 km2), and at both sites low-head dams were removed (~3–4 m) and ~65 000 m3 of sand-sized sediments were discharged to low-gradient reaches. Analyzing four years of repeat morphometry and sediment surveys at the Simkins site, as well as continuous discharge and turbidity data, we observed the two-phase erosion response described for MVD. In the early phase, approximately 50% of the impounded sediment at Simkins was eroded rapidly during modest flows. After incision to base level and widening, a second phase began when further erosion depended on floods large enough to go over bank and access impounded sediments more distant from the newly-formed channel. Fitting functional forms to the data for both sites, we found that two-phase exponential models with changing decay constants fit the erosion data better than single-phase models. Valley width influences the two-phase erosion responses upstream, but downstream responses appear more closely related to local gradient, sediment re-supply from the upstream impoundments, and base flows.

Direct Numerical Simulations of Particle-Laden Turbulent Channel Flow

NASA Astrophysics Data System (ADS)

Jebakumar, Anand Samuel; Premnath, Kannan; Abraham, John

2017-11-01

In a recent experimental study, Lau and Nathan (2014) reported that the distribution of particles in a turbulent pipe flow is strongly influenced by the Stokes number (St). At St lower than 1, particles migrate toward the wall and at St greater than 10 they tend to migrate toward the axis. It was suggested that this preferential migration of particles is due to two forces, the Saffman lift force and the turbophoretic force. Saffman lift force represents a force acting on the particle as a result of a velocity gradient across the particle when it leads or lags the fluid flow. Turbophoretic force is induced by turbulence which tends to move the particle in the direction of decreasing turbulent kinetic energy. In this study, the Lattice Boltzmann Method (LBM) is employed to simulate a particle-laden turbulent channel flow through Direct Numerical Simulations (DNS). We find that the preferential migration is a function of particle size in addition to the St. We explain the effect of the particle size and St on the Saffman lift force and turbophoresis and present how this affects particle concentration at different conditions.

Different elution modes and field programming in gravitational field-flow fractionation. III. Field programming by flow-rate gradient generated by a programmable pump.

PubMed

Plocková, J; Chmelík, J

2001-05-25

Gravitational field-flow fractionation (GFFF) utilizes the Earth's gravitational field as an external force that causes the settlement of particles towards the channel accumulation wall. Hydrodynamic lift forces oppose this action by elevating particles away from the channel accumulation wall. These two counteracting forces enable modulation of the resulting force field acting on particles in GFFF. In this work, force-field programming based on modulating the magnitude of hydrodynamic lift forces was implemented via changes of flow-rate, which was accomplished by a programmable pump. Several flow-rate gradients (step gradients, linear gradients, parabolic, and combined gradients) were tested and evaluated as tools for optimization of the separation of a silica gel particle mixture. The influence of increasing amount of sample injected on the peak resolution under flow-rate gradient conditions was also investigated. This is the first time that flow-rate gradients have been implemented for programming of the resulting force field acting on particles in GFFF.

GEOMORPHIC THRESHOLDS AND CHANNEL MORPHOLOGY IN LARGE RIVERS

EPA Science Inventory

Systematic changes in channel morphology occur as channel gradient, streamflow, and sediment character change and interact. Geomorphic thresholds of various kinds are useful metrics to define these changes along the river network, as they are based on in-channel processes that d...

High-performance ionic diode membrane for salinity gradient power generation.

PubMed

Gao, Jun; Guo, Wei; Feng, Dan; Wang, Huanting; Zhao, Dongyuan; Jiang, Lei

2014-09-03

Salinity difference between seawater and river water is a sustainable energy resource that catches eyes of the public and the investors in the background of energy crisis. To capture this energy, interdisciplinary efforts from chemistry, materials science, environmental science, and nanotechnology have been made to create efficient and economically viable energy conversion methods and materials. Beyond conventional membrane-based processes, technological breakthroughs in harvesting salinity gradient power from natural waters are expected to emerge from the novel fluidic transport phenomena on the nanoscale. A major challenge toward real-world applications is to extrapolate existing single-channel devices to macroscopic materials. Here, we report a membrane-scale nanofluidic device with asymmetric structure, chemical composition, and surface charge polarity, termed ionic diode membrane (IDM), for harvesting electric power from salinity gradient. The IDM comprises heterojunctions between mesoporous carbon (pore size ∼7 nm, negatively charged) and macroporous alumina (pore size ∼80 nm, positively charged). The meso-/macroporous membrane rectifies the ionic current with distinctly high ratio of ca. 450 and keeps on rectifying in high-concentration electrolytes, even in saturated solution. The selective and rectified ion transport furthermore sheds light on salinity-gradient power generation. By mixing artificial seawater and river water through the IDM, substantially high power density of up to 3.46 W/m(2) is discovered, which largely outperforms some commercial ion-exchange membranes. A theoretical model based on coupled Poisson and Nernst-Planck equations is established to quantitatively explain the experimental observations and get insights into the underlying mechanism. The macroscopic and asymmetric nanofluidic structure anticipates wide potentials for sustainable power generation, water purification, and desalination.

Prediction and validation of concentration gradient generation in a paper-based microfluidic channel

NASA Astrophysics Data System (ADS)

Jang, Ilhoon; Kim, Gang-June; Song, Simon

2016-11-01

A paper-based microfluidic channel has obtained attention as a diagnosis device that can implement various chemical or biological reactions. With benefits of thin, flexible, and strong features of paper devices, for example, it is often utilized for cell culture where controlling oxygen, nutrients, metabolism, and signaling molecules gradient affects the growth and movement of the cells. Among various features of paper-based microfluidic devices, we focus on establishment of concentration gradient in a paper channel. The flow is subject to dispersion and capillary effects because a paper is a porous media. In this presentation, we describe facile, fast and accurate method of generating a concentration gradient by using flow mixing of different concentrations. Both theoretical prediction and experimental validation are discussed along with inter-diffusion characteristics of porous flows. This work was supported by the National Research Foundation of Korea(NRF) Grant funded by the Korea government(MSIP) (No. 2016R1A2B3009541).

Ultra-High Gradient Channeling Acceleration in Nanostructures: Design/Progress of Proof-of-Concept (POC) Experiments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shin, Young Min; Green, A.; Lumpkin, A. H.

2016-09-16

A short bunch of relativistic particles or a short-pulse laser perturbs the density state of conduction electrons in a solid crystal and excites wakefields along atomic lattices in a crystal. Under a coupling condition the wakes, if excited, can accelerate channeling particles with TeV/m acceleration gradients in principle since the density of charge carriers (conduction electrons) in solids n 0 = ~ 10 20 – 10 23 cm -3 is significantly higher than what can be obtained in gaseous plasma. Nanostructures have some advantages over crystals for channeling applications of high power beams. The dechanneling rate can be reduced andmore » the beam acceptance increased by the large size of the channels. For beam-driven acceleration, a bunch length with a sufficient charge density would need to be in the range of the plasma wavelength to properly excite plasma wakefields, and channeled particle acceleration with the wakefields must occur before the ions in the lattices move beyond the restoring threshold. In the case of the excitation by short laser pulses, the dephasing length is appreciably increased with the larger channel, which enables channeled particles to gain sufficient amounts of energy. This paper describes simulation analyses on beam- and laser (X-ray)-driven accelerations in effective nanotube models obtained from Vsim and EPOCH codes. Experimental setups to detect wakefields are also outlined with accelerator facilities at Fermilab and NIU. In the FAST facility, the electron beamline was successfully commissioned at 50 MeV and it is being upgraded toward higher energies for electron accelerator R&D. The 50 MeV injector beamline of the facility is used for X-ray crystal-channeling radiation with a diamond target. It has been proposed to utilize the same diamond crystal for a channeling acceleration POC test. Another POC experiment is also designed for the NIU accelerator lab with time-resolved electron diffraction. Recently, a stable generation of single-cycle laser pulses with tens of Petawatt power based on thin film compression (TFC) technique has been investigated for target normal sheath acceleration (TNSA) and radiation pressure acceleration (RPA). The experimental plan with a nanometer foil is discussed with an available test facility such as Extreme Light Infrastructure – Nuclear Physics (ELI-NP).« less

Flood magnitude-frequency analysis and sediment transport capacity rate assessment in a mixed alluvial-bedrock channel at Val Lumnezia, Eastern Switzerland, (Graubünden)

NASA Astrophysics Data System (ADS)

Bekaddour, T.

2012-04-01

There is growing evidence in the literature that flood frequency has a large impact on the effective time scale of hillslope-derived sediment transport. Here, we present quantitative data on sediment transport in the mountainous Glenner River that drains the 120 km2-large Val Lumnezia basin, eastern Swiss Alps. The longitudinal profile of this stream is characterized by the presence of three ca. 500 m-long knickzones where channel gradients range from 0.02 to 0.2 mm-1 and the stream narrows to < 2 m wide gorges. Upstream and downstream of these knickzone reaches, the stream is flat with gradients < 0.01 mm-1, and cross-sectional widths ≥ 30 m. Measurements of the grain size distribution along the stream yield d84 values that range from ca. 10 to 28 cm, whereas the d50 values scatter around 10 cm. We explore the consequences of the channel morphology and the grain size distribution for the time scales of sediment transport by using a 1-D step-back water hydraulic model (HEC-RAS), to estimate hydraulic conditions at number of flood events and to predict hydraulic parameters and the boundary shear stress. The results reveal that along the knickzone reaches, a 2 years return period flood event Q2 is capable of mobilizing the d84 fraction where boundary critical shear stress exceeds the Shields critical shear stress value at incipient motion. In all other flat stream segments, the d84 fraction is barely attaining incipient motion where the critical boundary shear stress is approximately equal to the Shields critical shear stress at incipient motion. The results differ for smaller grain sizes , where Q2 is capable of mobilizing the d50 fraction along the entire stream. We anticipate that the overall effect of Q2 floods is the enrichment of coarse-grained sediment in the flat channel reaches by the entrainment of the d50 fraction, shifting to a better sorting of the bed particles. As a result, the degree of interlocking of coarse grain material may increases, which ultimately leads to enhanced stabilization of the channel bed and thus to a higher threshold of critical stress of incipient motion. Q10 floods, in contrast, are capable of moving both the d50 and d84 fractions, which implies that Q10 represents an effective flood that is results in the evacuation of hillslope-derived material over longer distances. Our results thus support the idea that the mechanisms and timescales of sediment transport in high mountain streams strongly depend on stream geometry and flood magnitude-frequency.

Transient bedrock channel evolution across a precipitation gradient: A case study from Kohala, Hawaii.

NASA Astrophysics Data System (ADS)

Gasparini, N. M.; Han, J.; Johnson, J. P.; Menking, J. A.

2011-12-01

This study uses observations from the Kohala Peninsula, on the Big Island of Hawaii, and numerical modeling, to explore how precipitation gradients may affect fluvial bedrock incision and channel morphology. Orographic precipitation patterns result in over 4 m/yr of rainfall on the wet side of the peninsula and less than 0.5 m/yr on the dry side. These precipitation patterns likely strongly contribute to the observed channel morphology. Further, the region is subsiding, leading to prolonged transient channel evolution. We explore changes in a number of channel morphologic parameters with watershed averaged precipitation rate. We use PRISM precipitation data and data from isohyets developed from historic rain gauge data. Not surprisingly, valley depth, measured from a 10 meter DEM, increases with spatially averaged precipitation rate. We also find that channel profile form varies with precipitation rate, with drier channels exhibiting a straight to slightly concave channel form and wetter channels exhibiting a convex to concave channel form. The precipitation value at which this transition in channel profile form occurs depends on the precipitation data-set used, highlighting the need for more accurate measurements of precipitation in settings with extreme precipitation patterns similar to our study area. The downstream pattern in precipitation is likely significant in the development of the convex-concave profile form. Numerical modeling results support that precipitation patterns such as those observed on the wet-side of the Kohala Peninsula may contribute to the convex-concave profile form. However, we emphasize that while precipitation patterns may contribute to the channel form, these channel features are transient and not expected to be sustained in steady-state landscapes. We also emphasize that it is fluvial discharge, as driven by precipitation, rather than precipitation alone, that drives the processes shaping the channel form. Because fluvial discharge is integrative, relatively extreme precipitation gradients are required to produce anomalous channel profile forms.

Synthesis of chalcogenide and pnictide crystals in salt melts using a steady-state temperature gradient

NASA Astrophysics Data System (ADS)

Chareev, D. A.; Volkova, O. S.; Geringer, N. V.; Koshelev, A. V.; Nekrasov, A. N.; Osadchii, V. O.; Osadchii, E. G.; Filimonova, O. N.

2016-07-01

Some examples of growing crystals of metals, alloys, chalcogenides, and pnictides in melts of halides of alkali metals and aluminum at a steady-state temperature gradient are described. Transport media are chosen to be salt melts of eutectic composition with the participation of LiCl, NaCl, KCl, RbCl, CsCl, AlCl3, AlBr3, KBr, and KI in a temperature range of 850-150°C. Some crystals have been synthesized only using a conducting contour. This technique of crystal growth is similar to the electrochemical method. In some cases, to exclude mutual influence, some elements have been isolated and forced to migrate to the crystal growth region through independent channels. As a result, crystals of desired quality have been obtained using no special equipment and with sizes sufficient for study under laboratory conditions.

West-Antarctic Ice Streams: Analog to Ice Flow in Channels on Mars

NASA Technical Reports Server (NTRS)

Lucchitta, B. K.

1997-01-01

Sounding of the sea floor in front of the Ross Ice Shelf in Antarctica recently revealed large persistent patterns of longitudinal megaflutes and drumlinoid forms, which are interpreted to have formed at the base of ice streams during the list glacial advance. The flutes bear remarkable resemblance to longitudinal grooves and highly elongated streamlined islands found on the floors of some large martian channels, called outflow channels. ln addition, other similarities exist between Antarctic ice streams and outflow channels. Ice streams are 30 to 80 km wide and hundreds of kilometers long, as are the martian channels. Ice stream beds are below sea level. Floors of many martian outflow channels lie below martian datum, which may have been close to or below past martian sea levels. The Antarctic ice stream bed gradient is flat and locally may go uphill, and surface slopes are exceptionally low. So are gradients of martian channels. The depth to the bed in ice streams is 1 to 1.5 km. At bankful stage, the depth of the fluid in outflow channels would have been 1 to 2 km. These similarities suggest that the martian outflow channels, whose origin is commonly attributed to gigantic catastrophic floods, were locally filled by ice that left a conspicuous morphologic imprint. Unlike the West-Antarctic-ice streams, which discharge ice from an ice sheet, ice in the martian channels came from water erupting from the ground. In the cold martian environment, this water, if of moderate volume, would eventually freeze. Thus it may have formed icings on springs, ice dams and jams on constrictions in the channel path, or frozen pools. Given sufficient thickness and downhill surface gradient, these ice masses would have moved; and given the right conditions, they could have moved like Antarctic ice streams.

Human alterations, dynamic equilibrium, and riparian ecosystem responses along selected rivers in Tuscany, Italy (Invited)

NASA Astrophysics Data System (ADS)

Hupp, C. R.; Rinaldi, M.

2010-12-01

Many, if not most, streams have been mildly to severely affected by human disturbance, which complicates efforts to understand riparian ecosystems. Mediterranean regions have a long history of human influences including: dams, stream channelization, mining of sediment, and levee /canal construction. Typically these alterations reduce the ecosystem services that functioning floodplains provide and may negatively impact the natural ecology of floodplains through reductions in suitable habitats, biodiversity, and nutrient cycling. Additionally, human alterations typically shift affected streams away from a state of natural dynamic equilibrium, where net sediment deposition is approximately in balance with net erosion. Lack of equilibrium typically affects the degree to which floodplain ecosystems are connected to streamflow regime. Low connectivity, usually from human- or climate-induced incision, may result in reduced flow on floodplains and lowered water tables. High connectivity may result in severe sediment deposition. Connectivity has a direct impact on vegetation communities. Riparian vegetation distribution patterns and diversity relative to various fluvial geomorphic channel patterns, landforms, and processes are described and interpreted for selected rivers of Tuscany, Central Italy; with emphasis on channel evolution following human impacts. Multivariate analysis reveals distinct quantitative vegetation patterns related to six fluvial geomorphic surfaces. Analysis of vegetation data also shows distinct associations of plants with adjustment processes related to the stage of channel evolution. Plant distribution patterns coincide with disturbance/landform/soil moisture gradients. Species richness increases from channel bed to terrace and on heterogeneous riparian areas, while species richness decreases from moderate to intense incision and from low to intense narrowing. As a feedback mechanism, woody vegetation in particular may facilitate geomorphic recovery of floodplains by affecting sedimentation dynamics. Identification and understanding of critical fluvial parameters related to floodplain connectivity (e.g. stream gradient, grain-size, and hydrography) and spatial and temporal sediment deposition/erosion process trajectories should facilitate management efforts to retain and/or regain important ecosystem services.

Mechanisms of cooperation and competition of two-species transport in narrow nanochannels

NASA Astrophysics Data System (ADS)

Bauer, Wolfgang Rudolf

2017-12-01

Flow of particles of two different species through a narrow channel with solely two discrete spatial positions is analyzed with respect to the species' capability to cooperate or compete for transport. The origin of the latter arises from particle-channel and interparticle interactions within the channel, i.e., blocking the position of a particle, and its interaction with its neighbors in the channel. The variety of occupation options within the channel defines the state space. The transition dynamics within is considered as a continuous Markov process, which, in contrast to mean-field approaches, conserves explicitly spatial correlations. A strong repulsive interaction between particles of the same kind and a very attractive empty channel imply a strong entanglement of transport of both species. In the limiting case of perfect coupling, flows in state space are restricted to a cyclic subspace, where they become all equivalent in the steady state. In particular, this implies equal particle flows of the two species. Entanglement of transport implies that the species mutually exert entropic forces on each other. For parallel directed concentration gradients this implies that the species' ability to cooperate increases with the degree of entanglement. Thus, the gradient of one species reciprocally induces a higher flow of the other species when compared to that in its absence. The opposite holds for antiparallel gradients where species mutually hamper their transport. For a sufficient strong coupling, the species under the influence of the stronger concentration gradient drives the other against its gradient, i.e., the positive mixing entropy production of the driving species becomes the motor for the negative mixing entropy production of the driven one. The degree of effectiveness by which negative entropy production emerges at the cost of positive entropy production increases with the coupling strength. This becomes evident from location and connectivity of the sources of entropy production in state space.

The voltage-gated proton channel: a riddle, wrapped in a mystery, inside an enigma

PubMed Central

DeCoursey, Thomas E.

2016-01-01

The main properties of voltage gated proton channels are described, along with what is known about how the channel protein structure accomplishes these functions. Just as protons are unique among ions, proton channels are unique among ion channels. Their four transmembrane helices sense voltage, the pH gradient, and conduct protons exclusively. Selectivity is achieved by the unique ability of H3O+ to protonate an Asp-Arg salt bridge. Pathognomonic sensitivity of gating to the pH gradient ensures channel opening only when acid extrusion will result, which is crucial to most biological functions. An exception occurs in dinoflagellates in which H+ influx through HV1 triggers the bioluminescent flash. Pharmacological interventions that promise to ameliorate cancer, asthma, brain damage in ischemic stroke, Alzheimer’s disease, autoimmune diseases, and numerous other conditions, await future progress. PMID:25964989

Electric potentiation of gravikinesis in Paramecium is possibly mediated by filaments.

PubMed

Machemer, H

1998-01-01

Sensitivity of Paramecium to mechanical stress including gravitational force is organized along two opposing gradients of membrane channel distribution: depolarizing Ca channels and hyperpolarizing K channels. Mechanoreceptor channels reside in the membrane of the cell soma and are activated, when the weight of the cytoplasm deforms the "lower" plasma membrane. Channel distribution is such as to generate ciliary activation which can counteract sedimentation of the cells: a reduction in downward swimming rate and an augmentation in upward swimming rate. Application of weak DC fields does not only induce the well-known cathodal orientation and swimming of Paramecium toward the cathode (galvano-taxis). We document that swimming velocity is augmented up to 175% as a function of the voltage gradient between 0.3 V/cm and 0.8 V/cm (galvanokinesis). A gradient of 0.3 V/cm was highly effective in raising the common negative gravikinesis of downward swimmers threefold. The gravikinesis of upward swimmers reversed polarity under field stimulation inducing cells to augment sedimentation effects (positive gravikinesis). Both effects of electric-field stimulation on ciliary activation are of the depolarizing type: reduction in the frequency of normally beating cilia. Analysis of the data shows that a voltage-sensitivity of gravireceptor channels would not account for the observed potentiation of negative gravikinesis. It is suggested that a previously described voltage-dependent Ca channel of the soma membrane interferes with a Ca(2+)-sensitive, peripheral filament system, which directly connects to gravireceptor channels.

Records of continental slope sediment flow morphodynamic responses to gradient and active faulting from integrated AUV and ROV data, offshore Palos Verdes, southern California Borderland

USGS Publications Warehouse

Maier, Katherine L.; Brothers, Daniel; Paull, Charles K.; McGann, Mary; Caress, David W.; Conrad, James E.

2016-01-01

Variations in seabed gradient are widely acknowledged to influence deep-water deposition, but are often difficult to measure in sufficient detail from both modern and ancient examples. On the continental slope offshore Los Angeles, California, autonomous underwater vehicle, remotely operated vehicle, and shipboard methods were used to collect a dense grid of high-resolution multibeam bathymetry, chirp sub-bottom profiles, and targeted sediment core samples that demonstrate the influence of seafloor gradient on sediment accumulation, depositional environment, grain size of deposits, and seafloor morphology. In this setting, restraining and releasing bends along the active right-lateral Palos Verdes Fault create and maintain variations in seafloor gradient. Holocene down-slope flows appear to have been generated by slope failure, primarily on the uppermost slope (~ 100–200 m water depth). Turbidity currents created a low relief (< 10 m) channel, up-slope migrating sediment waves (λ = ~ 100 m, h ≤ 2 m), and a series of depocenters that have accumulated up to 4 m of Holocene sediment. Sediment waves increase in wavelength and decrease in wave height with decreasing gradient. Integrated analysis of high-resolution datasets provides quantification of morphodynamic sensitivity to seafloor gradients acting throughout deep-water depositional systems. These results help to bridge gaps in scale between existing deep-sea and experimental datasets and may provide constraints for future numerical modeling studies.

Deltas as Ecomorphodynamic Systems: Effects of Vegetation Gradients on Sediment Trapping and Channel Dynamics

NASA Astrophysics Data System (ADS)

Piliouras, A.; Kim, W.; Goggin, H.

2014-12-01

Understanding the feedbacks between water, sediment, and vegetation in deltas is an important part of understanding deltas as ecomorphodynamic systems. We conducted a set of laboratory experiments using alfalfa (Medicago sativa) as a proxy for delta vegetation to determine (1) the effects of plants on delta growth and channel dynamics and (2) the influence of fine material on delta evolution. Vegetated experiments were compared to a control run without plants to isolate the effects of vegetation, and experiments with fine sediment were compared to a set of similar experiments with only sand. We found that alfalfa increased sediment trapping on the delta topset, and that the plants were especially effective at retaining fine material. Compared to the control run, the vegetated experiments showed an increased retention of fine sediment on the floodplain that resulted in increased delta relief and stronger pulses of shoreline progradation when channel avulsion and migration occurred. In other words, a higher amount of sediment storage with the addition of vegetation corresponded to a higher amount of sediment excavation during channelization events. In natural systems, dense bank vegetation is typically expected to help confine flow. We seeded our delta uniformly, which eliminated typical vegetation density gradients from riverbank to island center and therefore diminished the gradient in overbank sedimentation that best confines channels by creating levees. Dense clusters of alfalfa throughout the interior of the floodplain and delta islands were therefore able to induce flow splitting, where channels diverged around a stand of plants. This created several smaller channels that were then able to more widely distribute sediment at the delta front compared to unvegetated experiments. We conclude that plants are efficient sediment trappers that change the rate and amount of sediment storage in the delta topset, and that gradients in vegetation density are an important factor in determining how channel behavior may change.

Efficient operator splitting algorithm for joint sparsity-regularized SPIRiT-based parallel MR imaging reconstruction.

PubMed

Duan, Jizhong; Liu, Yu; Jing, Peiguang

2018-02-01

Self-consistent parallel imaging (SPIRiT) is an auto-calibrating model for the reconstruction of parallel magnetic resonance imaging, which can be formulated as a regularized SPIRiT problem. The Projection Over Convex Sets (POCS) method was used to solve the formulated regularized SPIRiT problem. However, the quality of the reconstructed image still needs to be improved. Though methods such as NonLinear Conjugate Gradients (NLCG) can achieve higher spatial resolution, these methods always demand very complex computation and converge slowly. In this paper, we propose a new algorithm to solve the formulated Cartesian SPIRiT problem with the JTV and JL1 regularization terms. The proposed algorithm uses the operator splitting (OS) technique to decompose the problem into a gradient problem and a denoising problem with two regularization terms, which is solved by our proposed split Bregman based denoising algorithm, and adopts the Barzilai and Borwein method to update step size. Simulation experiments on two in vivo data sets demonstrate that the proposed algorithm is 1.3 times faster than ADMM for datasets with 8 channels. Especially, our proposal is 2 times faster than ADMM for the dataset with 32 channels. Copyright © 2017 Elsevier Inc. All rights reserved.

Supersonic cavity flows over concave and convex walls

NASA Astrophysics Data System (ADS)

Ye, A. Ran; Das, Rajarshi; Setoguchi, Toshiaki; Kim, Heuy Dong

2016-04-01

Supersonic cavity flows are characterized by compression and expansion waves, shear layer, and oscillations inside the cavity. For decades, investigations into cavity flows have been conducted, mostly with flows at zero pressure gradient entering the cavity in straight walls. Since cavity flows on curved walls exert centrifugal force, the features of these flows are likely to differ from those of straight wall flows. The aim of the present work is to study the flow physics of a cavity that is cut out on a curved wall. Steady and unsteady numerical simulations were carried out for supersonic flow through curved channels over the cavity with L/H = 1. A straight channel flow was also analyzed which serves as the base model. The velocity gradient along the width of the channel was observed to increase with increasing the channel curvature for both concave and convex channels. The pressure on the cavity floor increases with the increase in channel curvature for concave channels and decreases for convex channels. Moreover, unsteady flow characteristics are more dependent on channel curvature under supersonic free stream conditions.

Performance Evaluation of LDPC Coding and Iterative Decoding System in BPM R/W Channel Affected by Head Field Gradient, Media SFD and Demagnetization Field

NASA Astrophysics Data System (ADS)

Nakamura, Yasuaki; Okamoto, Yoshihiro; Osawa, Hisashi; Aoi, Hajime; Muraoka, Hiroaki

We evaluate the performance of the write-margin for the low-density parity-check (LDPC) coding and iterative decoding system in the bit-patterned media (BPM) R/W channel affected by the write-head field gradient, the media switching field distribution (SFD), the demagnetization field from adjacent islands and the island position deviation. It is clarified that the LDPC coding and iterative decoding system in R/W channel using BPM at 3 Tbit/inch2 has a write-margin of about 20%.

The Effects of Large Wood on Stream Channel Morphology on Three Low-Gradient Stream Reaches in the Coastal Redwood Region

Treesearch

Scott Carroll; E. George Robison

2007-01-01

Several studies have shown that large wood has a prominent role in habitat quality, however there is little research on the role of wood on pool characteristics and other habitat components in low gradient streams (channel slopes less than one percent). Longitudinal profiles are used to analyze general residual pool characteristics of three approximately 1000-meter...

An analysis of induced pressure fields in electroosmotic flows through microchannels.

PubMed

Zhang, Yonghao; Gu, Xiao-Jun; Barber, Robert W; Emerson, David R

2004-07-15

Induced pressure gradients are found to cause band-broadening effects which are important to the performance of microfluidic devices, such as capillary electrophoresis and capillary chromatography. An improved understanding of the underlying mechanisms causing an induced pressure gradient in electroosmotic flows is presented. The analysis shows that the induced pressure distribution is the key to understanding the experimentally observed phenomena of leakage flows. A novel way of determining the static pressures at the inlet and outlet of microchannels is also presented that takes account of the pressure losses due to flow contraction and expansion. These commonly neglected pressure losses at the channel entrance and outlet are shown to be important in accurately describing the flow. The important parameters that define the effect of induced pressure on the flows are discussed, which may facilitate the design of improved microfluidic devices. The present model clearly identifies the mechanism behind the experimentally observed leakage flows, which is further confirmed by numerical simulations. Not only can the leakage flow occur from the electric-field-free side channel to the main channel, but also the fluid in the main channel can be attracted into the side channel by the induced pressure gradient. Copyright 2004 Elsevier Inc.

Seismic geomorphology of the Lobed-channel System of Upper Miocene Huangliu Formation, Yinggehai Basin, Northwestern South China Sea

NASA Astrophysics Data System (ADS)

Liu, H.

2016-02-01

Three-dimensional seismic data have been widely used in interpreting ancient river systems and their associated sediment deposits. Thin-bed reservoirs of lobed-channel system in lithostratigraphic units of Dongfang (DF) area are one of the major study areas for reservoir growth in the Yinggehai basin of northwestern South China Sea. Although it is understood that the transport mechanics of parent substrate and alluvium determine the morphology of channel for lobed-channel system, the transport mechanism and regional gradient are relatively poorly understood. This study is focused on the application of various techniques in seismic geomorphology to the Yinggehai Basin at paleo-water-depth of 120m to assess influences of regional gradient and relative sea level change on lobed-channel palaeogeomorphology in shallow-water environments. The Vietnam paleo-Blue River, which located at south of modern Red River, flowed through DF area and transported turbidity deposit to DF area in the coastal environment. In 3-D seismic survey area, four fifth-order sequences in first member of upper Miocene Huangliu formation were identified using well and seismic data. Seismic inversion and 90° phasing of seismic data were used to convert seismic traces to pseudolithologic logs. Stratal slicing made it possible to interpolate and extrapolate well-data-derived sequence and identify submarine fan, channel fill, lobes and overbank deposit. Strata slices suggested that sea-floor slopes exerted main influence on channel morphology. Specifically, DF13-1 block had high gradient, which mainly distributed mud-sand-rich lobes. However, DF13-2 block established low gradient, which mostly indicated sand-rich braided channels. The values of sinuosity, channel widths, meander-belt widths in DF13-2 block are all greater than these in DF13-1 block. In addition, results of carbon isotope measurements and foraminiferal research of two blocks suggest that paleo sea level in DF13-2 block (30m 150m) was higher than that of DF13-1 block (20m 90m). It also deciphered why channels in DF13-2 incised deeply because of the stronger hydrodynamic energy in the shallow-water environments. Thus DF13-2 block was formed in a lobed-channel and sand rich system, compared with DF13-1 of channelized-lobes and mud-sand rich system.

A study on the unsteady flow of two immiscible micropolar and Newtonian fluids through a horizontal channel: A numerical approach

NASA Astrophysics Data System (ADS)

Devakar, M.; Raje, Ankush

2018-05-01

The unsteady flow of two immiscible micropolar and Newtonian fluids through a horizontal channel is considered. In addition to the classical no-slip and hyper-stick conditions at the boundary, it is assumed that the fluid velocities and shear stresses are continuous across the fluid-fluid interface. Three cases for the applied pressure gradient are considered to study the problem: one with constant pressure gradient and the other two cases with time-dependent pressure gradients, viz. periodic and decaying pressure gradient. The Crank-Nicolson approach has been used to obtain numerical solutions for fluid velocity and microrotation for diverse sets of fluid parameters. The nature of fluid velocities and microrotation with various values of pressure gradient, Reynolds number, ratio of viscosities, micropolarity parameter and time is illustrated through graphs. It has been observed that micropolarity parameter and ratio of viscosities reduce the fluid velocities.

Spatially Different Tissue-Scale Diffusivity Shapes ANGUSTIFOLIA3 Gradient in Growing Leaves.

PubMed

Kawade, Kensuke; Tanimoto, Hirokazu; Horiguchi, Gorou; Tsukaya, Hirokazu

2017-09-05

The spatial gradient of signaling molecules is pivotal for establishing developmental patterns of multicellular organisms. It has long been proposed that these gradients could arise from the pure diffusion process of signaling molecules between cells, but whether this simplest mechanism establishes the formation of the tissue-scale gradient remains unclear. Plasmodesmata are unique channel structures in plants that connect neighboring cells for molecular transport. In this study, we measured cellular- and tissue-scale kinetics of molecular transport through plasmodesmata in Arabidopsis thaliana developing leaf primordia by fluorescence recovery assays. These trans-scale measurements revealed biophysical properties of diffusive molecular transport through plasmodesmata and revealed that the tissue-scale diffusivity, but not the cellular-scale diffusivity, is spatially different along the leaf proximal-to-distal axis. We found that the gradient in cell size along the developmental axis underlies this spatially different tissue-scale diffusivity. We then asked how this diffusion-based framework functions in establishing a signaling gradient of endogenous molecules. ANGUSTIFOLIA3 (AN3) is a transcriptional co-activator, and as we have shown here, it forms a long-range signaling gradient along the leaf proximal-to-distal axis to determine a cell-proliferation domain. By genetically engineering AN3 mobility, we assessed each contribution of cell-to-cell movement and tissue growth to the distribution of the AN3 gradient. We constructed a diffusion-based theoretical model using these quantitative data to analyze the AN3 gradient formation and demonstrated that it could be achieved solely by the diffusive molecular transport in a growing tissue. Our results indicate that the spatially different tissue-scale diffusivity is a core mechanism for AN3 gradient formation. This provides evidence that the pure diffusion process establishes the formation of the long-range signaling gradient in leaf development. Copyright © 2017 Biophysical Society. Published by Elsevier Inc. All rights reserved.

A Study of the Development of Steady and Periodic Unsteady Turbulent Wakes Through Curved Channels at Positive, Zero, and Negative Streamwise Pressure Gradients, Part 1

NASA Technical Reports Server (NTRS)

Schobeiri, M. T.; John, J.

1996-01-01

The turbomachinery wake flow development is largely influenced by streamline curvature and streamwise pressure gradient. The objective of this investigation is to study the development of the wake under the influence of streamline curvature and streamwise pressure gradient. The experimental investigation is carried out in two phases. The first phase involves the study of the wake behind a stationary circular cylinder (steady wake) in curved channels at positive, zero, and negative streamwise pressure gradients. The mean velocity and Reynolds stress components are measured using a X-hot-film probe. The measured quantities obtained in probe coordinates are transformed to a curvilinear coordinate system along the wake centerline and are presented in similarity coordinates. The results of the steady wakes suggest strong asymmetry in velocity and Reynolds stress components. However, the velocity defect profiles in similarity coordinates are almost symmetrical and follow the same distribution as the zero pressure gradient straight wake. The results of Reynolds stress distributions show higher values on the inner side of the wake than the outer side. Other quantities, including the decay of maximum velocity defect, growth of wake width, and wake integral parameters, are also presented for the three different pressure gradient cases of steady wake. The decay rate of velocity defect is fastest for the negative streamwise pressure gradient case and slowest for the positive pressure gradient case. Conversely, the growth of the wake width is fastest for the positive streamwise pressure gradient case and slowest for the negative streamwise pressure gradient. The second phase studies the development of periodic unsteady wakes generated by the circular cylinders of the rotating wake generator in a curved channel at zero streamwise pressure gradient. Instantaneous velocity components of the periodic unsteady wakes, measured with a stationary X-hot-film probe, are analyzed by the phase averaging techniques. The temporal distribution of velocity and Reynolds stress components obtained in a stationary frame of reference are transformed to a spatial distribution in a relative frame of reference. Profiles of phase-averaged velocity and Reynolds stress distributions in the relative frame of reference and similarity coordinates are presented. The velocity defect and Reynolds stress distributions agree with the results of the wake development behind a stationary cylinder in the curved channel at zero streamwise pressure gradient. The phase-averaged third-order correlations, presented in the relative frame of reference and similarity coordinates, show pronounced asymmetric features.

Velocity distributions in a micromixer measured by NMR imaging.

PubMed

Ahola, Susanna; Telkki, Ville-Veikko; Stapf, Siegfried

2012-04-24

Velocity distributions (so-called propagators) with two-dimensional spatial resolution inside a chemical micromixer were measured by pulsed-field-gradient spin-echo (PGSE) nuclear magnetic resonance (NMR). A surface coil matching the volume of interest was built to enhance the signal-to-noise ratio. This enabled the acquisition of velocity maps with a very high spatial resolution of 29 μm × 39 μm. The measured propagators are compared with theoretical distributions and a good agreement is found. The results show that the propagator data provide much richer information about flow behaviour than conventional NMR velocity imaging and the information is essential for understanding the performance of a micromixer. It reveals, for example, deviations in the shape and size of the channel structures and multicomponent flow velocity distribution of overlapping channels. Propagator data efficiently compensate lost information caused by insufficient 3D resolution in conventional velocity imaging.

A revised velocity-reversal and sediment-sorting model for a high-gradient, pool-riffle stream

USGS Publications Warehouse

Thompson, D.M.; Wohl, E.E.; Jarrett, R.D.

1996-01-01

Sediment-sorting processes related to varying channel-bed morphology were investigated from April to November 1993 along a 1-km pool-riffle and step-pool reach of North Saint Vrain Creek, a small mountain stream in the Rocky Mountains of northern Colorado. Measured cross-sectional areas of flow were used to suggest higher velocities in pools than in riffles at high flow. Three hundred and sixteen tracer particles, ranging in size from 16 mm to 256 mm, were placed in two separate pool-riffle-pool sequences and used to assess sediment-sorting patterns and sediment-transport competence variations. Tracer-particle depositional evidence indicated higher sediment-transport competence in pools than in riffles at high flow. Pool-riffle sediment sorting may be created by velocity reversals, and more localized sorting results from gravitational forces along the upstream sloping portion of the channel bed located at the downstream end of pools.

The role of vegetation in the formation of anabranching channels in an ephemeral river, Northern plains, arid central Australia

NASA Astrophysics Data System (ADS)

Tooth, Stephen; Nanson, Gerald C.

2000-10-01

As the distribution and abundance of vegetation in drylands is often controlled by the greater availability of water along river channels, riparian vegetation has the potential to influence significantly dryland river form, process and behaviour. This paper demonstrates how a small indigenous shrub, the inland teatree (Melaleuca glomerata), influences the formation and maintenance of anabranching channels in a reach of the ephemeral Marshall River, Northern Plains, arid central Australia. Here, the Marshall is characterized by ridge-form anabranching, where water and sediment are routed through subparallel, multiple channels of variable size which occur within a typically straight channel-train. Channels are separated by channel-train ridges - narrow, flow-aligned, vegetated features - or by wider islands. By providing a substantial element of boundary roughness, dense stands of teatrees growing on channel beds or atop the ridges and islands influence flow velocities, flow depths and sediment transport, resulting in flow diversion, bank and floodplain erosion, and especially sediment deposition. Ridges and islands represent a continuum of forms, and their formation and development can be divided into a three-stage sequence involving teatree growth and alluvial sedimentation.1Teatrees colonize a flat, sandy channel bed, initiating the formation of ridges by lee-side accretion. Individual ridges grow laterally, vertically and longitudinally and maintain a geometrically similar streamlined (lemniscate) form that presents minimum drag.2Individual ridges grow in size, and interact with neighbouring ridges, causing the lemniscate forms to become distorted. Ridges in the lee of other ridges tend to be protected from the erosive effects of floods and survive, whereas individual teatrees or small ridges exposed to flow concentrated between larger ridges, tend to be removed.3

A microfluidic multi-injector for gradient generation.

PubMed

Chung, Bong Geun; Lin, Francis; Jeon, Noo Li

2006-06-01

This paper describes a microfluidic multi-injector (MMI) that can generate temporal and spatial concentration gradients of soluble molecules. Compared to conventional glass micropipette-based methods that generate a single gradient, the MMI exploits microfluidic integration and actuation of multiple pulsatile injectors to generate arbitrary overlapping gradients that have not previously been possible. The MMI device is fabricated in poly(dimethylsiloxane) (PDMS) using multi-layer soft lithography and consists of fluidic channels and control channels with pneumatically actuated on-chip barrier valves. Repetitive actuation of on-chip valves control pulsatile release of solution that establishes microscopic chemical gradients around the orifice. The volume of solution released per actuation cycle ranged from 30 picolitres to several hundred picolitres and increased linearly with the duration of valve opening. The shape of the measured gradient profile agreed closely with the simulated diffusion profile from a point source. Steady state gradient profiles could be attained within 10 minutes, or less with an optimized pulse sequence. Overlapping gradients from 2 injectors were generated and characterized to highlight the advantages of MMI over conventional micropipette assays. The MMI platform should be useful for a wide range of basic and applied studies on chemotaxis and axon guidance.

Eruption Constraints for a Young Channelized Lava Flow, Marte Vallis, Mars

NASA Technical Reports Server (NTRS)

Therkelsen, J. P.; Santiago, S. S.; Grosfils, E. B.; Sakimoto, S. E. H.; Mendelson, C. V.; Bleacher, J. E.

2001-01-01

This study constrains flow rates for a specific channelized lava flow in Marte Vallis, Mars. We measured slope-gradient, channel width, and channel depth. Our results are similar to other recent studies which suggests similarities to long, terrestrial basaltic flow. Additional information is contained in the original extended abstract.

Role of mixed boundaries on flow in open capillary channels with curved air-water interfaces.

PubMed

Zheng, Wenjuan; Wang, Lian-Ping; Or, Dani; Lazouskaya, Volha; Jin, Yan

2012-09-04

Flow in unsaturated porous media or in engineered microfluidic systems is dominated by capillary and viscous forces. Consequently, flow regimes may differ markedly from conventional flows, reflecting strong interfacial influences on small bodies of flowing liquids. In this work, we visualized liquid transport patterns in open capillary channels with a range of opening sizes from 0.6 to 5.0 mm using laser scanning confocal microscopy combined with fluorescent latex particles (1.0 μm) as tracers at a mean velocity of ∼0.50 mm s(-1). The observed velocity profiles indicate limited mobility at the air-water interface. The application of the Stokes equation with mixed boundary conditions (i.e., no slip on the channel walls and partial slip or shear stress at the air-water interface) clearly illustrates the increasing importance of interfacial shear stress with decreasing channel size. Interfacial shear stress emerges from the velocity gradient from the adjoining no-slip walls to the center where flow is trapped in a region in which capillary forces dominate. In addition, the increased contribution of capillary forces (relative to viscous forces) to flow on the microscale leads to increased interfacial curvature, which, together with interfacial shear stress, affects the velocity distribution and flow pattern (e.g., reverse flow in the contact line region). We found that partial slip, rather than the commonly used stress-free condition, provided a more accurate description of the boundary condition at the confined air-water interface, reflecting the key role that surface/interface effects play in controlling flow behavior on the nanoscale and microscale.

Variation of alluvial-channel width with discharge and character of sediment

USGS Publications Warehouse

Osterkamp, W.R.

1979-01-01

Use of channel measurements to estimate discharge characteristics of alluvial streams has shown that little agreement exists for the exponent of the width-discharge relation. For the equation Q = aWAb, where Q is mean discharge and WA is active-channel width, it is proposed that the exponent, b, should be of fixed value for most natural, perennial, alluvial stream channels and that the coefficient, a, varies with the characteristics of the bed and bank material.Three groups of perennial stream channels with differing characteristics were selected for study using consistent procedures of data collection. A common feature of the groups was general channel stability, that is, absence of excessive widening by erosive discharges. Group 1 consisted of 32 channels of gradient exceeding 0.0080, low suspended-sediment discharge, high channel roughness, and low discharge variability. Group 2 consisted of 13 streams in Kansas having at least 70 percent silt and clay in the bed material and having similar discharge variability, climate, gradient, and riparian vegetation. Group 3, in southern Missouri, consisted of discharge channels of 18 springs having similar conditions of very low discharge variability, climate and vegetation, but variable bed and bank material. Values for the exponent for the three groups of data are 1.98, 1.97, and 1.97, respectively, whereas values of the coefficients are 0.017, 0.042, and 0.011 when discharge is expressed in cubic meters per second and width is in meters. The relation for high-gradient channels (group 1) is supported by published data from laboratory flumes.The similarity of the three values of the exponent demonstrates that a standard exponent of 2.0, significant to two figures, is reasonable for the width-mean discharge relation of perennial, alluvial stream channels, and that the exponent is independent of other variables. Using a fixed exponent of 2.0, a family of simple power-function equations was developed expressing the manner in which channel sediment affects the width-discharge relation.

A polydimethylsiloxane-polycarbonate hybrid microfluidic device capable of generating perpendicular chemical and oxygen gradients for cell culture studies.

PubMed

Chang, Chia-Wen; Cheng, Yung-Ju; Tu, Melissa; Chen, Ying-Hua; Peng, Chien-Chung; Liao, Wei-Hao; Tung, Yi-Chung

2014-10-07

This paper reports a polydimethylsiloxane-polycarbonate (PDMS-PC) hybrid microfluidic device capable of performing cell culture under combinations of chemical and oxygen gradients. The microfluidic device is constructed of two PDMS layers with microfluidic channel patterns separated by a thin PDMS membrane. The top layer contains an embedded PC film and a serpentine channel for a spatially confined oxygen scavenging chemical reaction to generate an oxygen gradient in the bottom layer for cell culture. Using the chemical reaction method, the device can be operated with a small amount of chemicals, without bulky gas cylinders and sophisticated flow control schemes. Furthermore, it can be directly used in conventional incubators with syringe pumps to simplify the system setup. The bottom layer contains arrangements of serpentine channels for chemical gradient generation and a cell culture chamber in the downstream. The generated chemical and oxygen gradients are experimentally characterized using a fluorescein solution and an oxygen-sensitive fluorescent dye, respectively. For demonstration, a 48 hour cell-based drug test and a cell migration assay using human lung adenocarcinoma epithelial cells (A549) are conducted under various combinations of the chemical and oxygen gradients in the experiments. The drug testing results show an increase in A549 cell apoptosis due to the hypoxia-activated cytotoxicity of tirapazamine (TPZ) and also suggest great cell compatibility and gradient controllability of the device. In addition, the A549 cell migration assay results demonstrate an aerotactic behavior of the A549 cells and suggest that the oxygen gradient plays an essential role in guiding cell migration. The migration results, under combinations of chemokine and oxygen gradients, cannot be simply superposed with single gradient results. The device is promising to advance the control of in vitro microenvironments, to better study cellular responses under various physiological conditions for biomedical applications.

Relationships of elevation, channel slope, and stream width to occurrences of native fishes at the Great Plains-Rocky Mountains interface

USGS Publications Warehouse

Brunger, Lipsey T.S.; Hubert, W.A.; Rahel, F.J.

2005-01-01

Environmental gradients occur with upstream progression from plains to mountains and affect the occurrence of native warmwater fish species, but the relative importance of various environmental gradients are not defined. We assessed the relative influences of elevation, channel slope, and stream width on the occurrences of 15 native warmwater fish species among 152 reaches scattered across the North Platte River drainage of Wyoming at the interface of the Great Plains and Rocky Mountains. Most species were collected in reaches that were lower in elevation, had lower channel slopes, and were wider than the medians of the 152 sampled reaches. Several species occurred over a relatively narrow range of elevation, channel slope, or stream width among the sampled reaches, but the distributions of some species appeared to extend beyond the ranges of the sampled reaches. We identified competing logistic-regression models that accounted for the occurrence of individual species using the information-theoretic approach. Linear logistic-regression models accounted for patterns in the data better than curvilinear models for all species. The highest ranked models included channel slope for seven species, elevation for six species, stream width for one species, and both channel slope and stream width for one species. Our results suggest that different environmental gradients may affect upstream boundaries of different fish species at the interface of the Great Plains and Rocky Mountains in Wyoming.

Distribution and characterization of in-channel large wood in relation to geomorphic patterns on a low-gradient river

USGS Publications Warehouse

Moulin, Bertrand; Schenk, Edward R.; Hupp, Cliff R.

2011-01-01

A 177 river km georeferenced aerial survey of in-channel large wood (LW) on the lower Roanoke River, NC was conducted to determine LW dynamics and distributions on an eastern USA low-gradient large river. Results indicate a system with approximately 75% of the LW available for transport either as detached individual LW or as LW in log jams. There were approximately 55 individual LW per river km and another 59 pieces in log jams per river km. Individual LW is a product of bank erosion (73% is produced through erosion) and is isolated on the mid and upper banks at low flow. This LW does not appear to be important for either aquatic habitat or as a human risk. Log jams rest near or at water level making them a factor in bank complexity in an otherwise homogenous fine-grained channel. A segmentation test was performed using LW frequency by river km to detect breaks in longitudinal distribution and to define homogeneous reaches of LWfrequency. Homogeneous reaches were then analyzed to determine their relationship to bank height, channel width/depth, sinuosity, and gradient. Results show that log jams are a product of LW transport and occur more frequently in areas with high snag concentrations, low to intermediate bank heights, high sinuosity, high local LW recruitment rates, and narrow channel widths. The largest concentration of log jams (21.5 log jams/km) occurs in an actively eroding reach. Log jam concentrations downstream of this reach are lower due to a loss of river competency as the channel reaches sea level and the concurrent development of unvegetated mudflats separating the active channel from the floodplain forest. Substantial LW transport occurs on this low-gradient, dam-regulated large river; this study, paired with future research on transport mechanisms should provide resource managers and policymakers with options to better manage aquatic habitat while mitigating possible negative impacts to human interests.

Thermal transpiration: A molecular dynamics study

NASA Astrophysics Data System (ADS)

T, Joe Francis; Sathian, Sarith P.

2014-12-01

Thermal transpiration is a phenomenon where fluid molecules move from the cold end towards the hot end of a channel under the influence of longitudinal temperature gradient alone. Although the phenomenon of thermal transpiration is observed at rarefied gas conditions in macro systems, the phenomenon can occur at atmospheric pressure if the characteristic dimensions of the channel is less than 100 nm. The flow through these nanosized channels is characterized by the free molecular flow regimes and continuum theory is inadequate to describe the flow. Thus a non-continuum method like molecular dynamics (MD) is necessary to study such phenomenon. In the present work, MD simulations were carried out to investigate the occurance of thermal transpiration in copper and platinum nanochannels at atmospheric pressure conditions. The mean pressure of argon gas confined inside the nano channels was maintained around 1 bar. The channel height is maintained at 2nm. The argon atoms interact with each other and with the wall atoms through the Lennard-Jones potential. The wall atoms are modelled using an EAM potential. Further, separate simulations were carried out where a Harmonic potential is used for the atom-atom interaction in the platinum channel. A thermally insulating wall was introduced between the low and high temperature regions and those wall atoms interact with fluid atoms through a repulsive potential. A reduced cut off radius were used to achieve this. Thermal creep is induced by applying a temperature gradient along the channel wall. It was found that flow developed in the direction of the increasing temperature gradient of the wall. An increase in the volumetric flux was observed as the length of the cold and the hot regions of the wall were increased. The effect of temperature gradient and the wall-fluid interaction strength on the flow parameters have been studied to understand the phenomenon better.

Chronology of processes in high-gradient channels of medium-high mountains and their influence on the properties of alluvial fans

NASA Astrophysics Data System (ADS)

Šilhán, Karel

2014-02-01

High-gradient channels are the locations of the greatest geomorphological activity in medium-high mountains. The channels' frequency and character influence the contemporary morphology and morphometry of alluvial fans. There is currently no detailed information regarding the frequency of these processes in high-gradient channels and the evolution of alluvial fans in medium-high mountains in Central Europe. This study in the Moravskoslezské Beskydy Mts. analysed 22 alluvial fans (10 debris flow fans and 12 fluvial fans). The processes occurring on the fans were dated using dendrogeomorphological methods. A total of 748 increment cores were taken from 374 trees to reconstruct 153 geomorphological process events (60 debris flow and 93 floods). The frequency of the processes has been considerably increasing in the last four decades, which can be related to extensive tree cutting since the 1970s. Processes in high-gradient channels in the region (affecting the alluvial fans across the mountain range) are predominantly controlled by cyclonal activity during the warm periods of the year. Probable triggers of local events are heavy downpours in the summer. In addition, spring snowmelt has been identified as occasionally important. This study of the relations affecting the type and frequency of the processes and their effect on the properties of alluvial fans led to the creation of a universal framework for the medium-high flysch mountains of Central Europe. The framework particularly reflects the influence of the character of hydrometeorological extremes on the frequency and type of processes and their reflection in the properties of alluvial fans.

Interaction of lateral baroclinic forcing and turbulence in an estuary

USGS Publications Warehouse

Lacy, J.R.; Stacey, M.T.; Burau, J.R.; Monismith, Stephen G.

2003-01-01

Observations of density and velocity in a channel in northern San Francisco Bay show that the onset of vertical density stratification during flood tides is controlled by the balance between the cross-channel baroclinic pressure gradient and vertical mixing due to turbulence. Profiles of velocity, salinity, temperature, and suspended sediment concentration were measured in transects across Suisun Cutoff, in northern San Francisco Bay, on two days over the 12.5-hour tidal cycle. During flood tides an axial density front developed between fresher water flowing from the shallows of Grizzly Bay into the northern side of Suisun Cutoff and saltier water flowing up the channel. North of the front, transverse currents were driven by the lateral salinity gradient, with a top-to-bottom velocity difference greater than 30 cm/s. South of the front, the secondary circulation was weak, and along-channel velocities were greater than to the north. The gradient Richardson number shows that stratification was stable north of the front, while the water column was turbulently mixed south of the front. Time-series measurements of velocity and salinity demonstrate that the front develops during each tidal cycle. In estuaries, longitudinal dynamics predict less stratification during flood than ebb tides. These data show that stratification can develop during flood tides due to a lateral baroclinic pressure gradient in estuaries with complex bathymetry.

Investigating spatial variability of vertical water fluxes through the streambed in distinctive stream morphologies using temperature and head data

NASA Astrophysics Data System (ADS)

Wang, Liping; Jiang, Weiwei; Song, Jinxi; Dou, Xinyi; Guo, Hongtao; Xu, Shaofeng; Zhang, Guotao; Wen, Ming; Long, Yongqing; Li, Qi

2017-08-01

Investigating the interaction of groundwater and surface water is key to understanding the hyporheic processes. The vertical water fluxes through a streambed were determined using Darcian flux calculations and vertical sediment temperature profiles to assess the pattern and magnitude of groundwater/surface-water interaction in Beiluo River, China. Field measurements were taken in January 2015 at three different stream morphologies including a meander bend, an anabranching channel and a straight stream channel. Despite the differences of flux direction and magnitude, flux directions based on vertical temperature profiles are in good agreement with results from Darcian flux calculations at the anabranching channel, and the Kruskal-Wallis tests show no significant differences between the estimated upward fluxes based on the two methods at each site. Also, the upward fluxes based on the two methods show similar spatial distributions on the streambed, indicating (1) that higher water fluxes at the meander bend occur from the center of the channel towards the erosional bank, (2) that water fluxes at the anabranching channel are higher near the erosional bank and in the center of the channel, and (3) that in the straight channel, higher water fluxes appear from the center of the channel towards the depositional bank. It is noted that higher fluxes generally occur at certain locations with higher streambed vertical hydraulic conductivity ( K v) or where a higher vertical hydraulic gradient is observed. Moreover, differences of grain size, induced by stream morphology and contrasting erosional and depositional conditions, have significant effects on streambed K v and water fluxes.

Water-quality assessment of the Ozark Plateaus study unit, Arkansas, Kansas, Missouri, and Oklahoma- habitat data and characteristics at selected sites, 1993-95

USGS Publications Warehouse

Femmer, Suzanne R.

1997-01-01

The characterization of instream and riparian habitat is part of the multiple lines of evidence used by the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program to assess the water quality of streams. In the NAWQA Program, integrated physical, chemical, and biological assessments are used to describe water-quality conditions. The instream and riparian habitat data are collected at sites selected for surface-water chemistry analyses and biological assessment. Instream and riparian habitat data are structured in a nested scheme?at sampling reach, segment, and basin scales. The habitat data were collected in the Ozark Plateaus study unit at 41 sites during 1993-95. Thirteen of these sites, representative of selected combinations of physiography, land use, and basin size, have longitudinal, transverse, and quarter point vegetation plot surveys in addition to the Level I survey measurements (reach length, depth, velocity, dominant substrate, embeddedness, and vegetation quarter points, for example) recommended by the NAWQA Program protocols. These habitat data were from onsite measurements, U.S. Geological Survey topographic maps, and a geographic information system. The analyses of the habitat data indicates substantial differences between sites of differing physiography and basin-scale land-use activities. The basins range from 46.4 to 4,318 square kilometers and have stream orders from 2 to 6. All streams studied are a riffle/pool type, and most have cobble that is less than 50 percent embedded as the dominant streambed substrate. Of the three physiographic sections studied, the Boston Mountains have the largest mean segment and sideslope gradients, basin relief, woody species diversity, and stream depths when compared with sites of similar size. Channel sinuosities, mean velocities, and canopy angles are largest at sites in the Springfield Plateau physiographic section. The sites in the Salem Plateau physiographic section have the largest woody vegetation densities and mean channel widths. Sites in basins with predominantly agricultural land use tend to have more open canopies, steeper segment gradients, and more sinuous stream channels than the forested sites. Sites in predominantly forested basins tend to have deeper and swifter flow, smaller channel widths, and more dense woody riparian vegetation (at small basins) than the agricultural sites.

Geomorphic Framework to assess changes to aquatic habitat due to flow regulation and channel and floodplain alteration, Cedar River, Washington

USGS Publications Warehouse

Gendaszek, Andrew S.; Magirl, Christopher S.; Czuba, Christiana R.; Konrad, Christopher P.; Little, Rand

2010-01-01

Flow regulation, bank armoring, and floodplain alteration since the early 20th century have contributed to significant changes in the hydrologic regime and geomorphic processes of the Cedar River in Washington State. The Cedar River originates in the Cascade Range, provides drinking water to the Seattle metropolitan area, and supports several populations of anadromous salmonids. Flow regulation currently has limited influence on the magnitude, duration, and timing of high-flow events, which affect the incubation of salmonids as well as the production and maintenance of their habitat. Unlike structural changes to the channel and floodplain, flow regulation may be modified in the short-term to improve the viability of salmon populations. An understanding of the effects of flow regulation on those populations must be discerned over a range of scales from individual floods that affect the size of individual year classes to decadal high flow regime that influences the amount and quality of channel and off-channel habitat available for spawning and rearing. We present estimates of reach-scale sediment budgets and changes to channel morphology derived from historical orthoimagery, specific gage analyses at four long-term streamflow-gaging stations to quantify trends in aggradation, and hydrologic statistics of the magnitude and duration of peak streamflows. These data suggest a gradient of channel types from unconfined, sediment-rich segments to confined, sediment-poor segments that are likely to have distinct responses to high flows. Particle-size distribution data and longitudinal water surface and streambed profiles for the 56 km downstream of Chester Morse Lake measured in 2010 show the spatial extent of preferred salmonid habitat along the Cedar River. These historical and current data constitute a geomorphic framework to help assess different river management scenarios for salmonid habitat and population viability. PDF version of a presentation on changes to aquatic habitat at the Cedar River in Washington state. Presented at the American Geophysical Union Fall Meeting 2010.

Landslides control the spatial and temporal variation of channel width in southern Taiwan: implications for landscape evolution and cascading hazards in steep, tectonically active landscapes

NASA Astrophysics Data System (ADS)

Yanites, B.; Bregy, J. C.; Carlson, G.; Cataldo, K.; Holahan, M.; Johnston, G.; Mitchell, N. A.; Nelson, A.; Valenza, J.; Wanker, M.

2017-12-01

Intense precipitation or seismic events can generate clustered mass movement processes across a landscape. These rare events have significant impacts on the landscape, however, the rarity of such events leads to uncertainty in how these events impact the entire geomorphic system over a range of timescales. Taiwan is a steep, seismically active region and is highly prone to landslide and debris flows, especially when exposed to heavy rainfall events. Typhoon Morakot made landfall in Taiwan in August of 2009, delivering record-breaking rainfall and inducing more than 22,000 landslides in southern Taiwan. The topographic gradient in southern Taiwan leads to spatial variability in landslide susceptibility providing an opportunity to infer the long-term impact of landslides on channel morphology. The availability of pre and post typhoon imagery allows a quantitative reconstruction on the propagating impact of this event on channel width. The pre and post typhoon patterns of channel width to river and hillslope gradients in 20 basins in the study area reveal the importance of cascading hazards from landslides on landscape evolution. Prior to Typhoon Morakot, the river channels in the central part of the study area were about 3-10 times wider than the channels in the south. Aggradation and widening was also a maximum in these basins where hillslope gradients and channel steepness is high. The results further show that the narrowest channels are located where channel steepness is the lowest, an observation inconsistent with a detachment-limited model for river evolution. We infer this pattern is indicative of a strong role of sediment supply, and associated landslide events, on long-term channel evolution. These findings have implications across a range of spatial and temporal scales including understanding the cascade of hazards in steep landscapes and geomorphic interpretation of channel morphology.

Mode transition induced by the magnetic field gradient in Hall thrusters

NASA Astrophysics Data System (ADS)

Han, Liang; Wei, Liqiu; Yu, Daren

2016-09-01

A mode transition phenomenon was found in Hall thrusters, which was induced by the increase of the magnetic field gradient. In the transition process, we observed experimentally that there have been obvious changes in the oscillation, the mean value of the discharge current, the thrust, the anode efficiency, and the plume pattern. The shifting and compression of the high magnetic field causes the electron density in the discharge channel to decrease and the ionization zone to move towards the exit plane. This also corresponds to a low atom density in the discharge channel, resulting in a loss of stability of the ionization at a high magnetic field gradient, which presents the transition of the discharge mode.

Transport of sediment through a channel network during a post-fire debris flow

NASA Astrophysics Data System (ADS)

Nyman, P.; Box, W. A. C.; Langhans, C.; Stout, J. C.; Keesstra, S.; Sheridan, G. J.

2017-12-01

Transport processes linking sediment in steep headwaters with rivers during high magnitude events are rarely examined in detail, particularly in forested settings where major erosion events are rare and opportunities for collecting data are limited. Yet high magnitude events in headwaters are known to drive landscape change. This study examines how a debris flow after wildfire impacts on sediment transport from small headwaters (0.02 km2) through a step pool stream system within a larger 14 km2 catchment, which drains into the East Ovens River in SE Australia. Sediment delivery from debris flows was modelled and downstream deposition of sediment was measured using a combination of aerial imagery and field surveys. Particle size distributions were measured for all major deposits. These data were summarised to map sediment flux as a continuous variable over the drainage network. Total deposition throughout the stream network was 39 x 103 m3. Catchment efflux was 61 x 103 m3 (specific sediment yield of 78 ton ha-1), which equates to 400-800 years of background erosion, based on measurements in nearby catchments. Despite the low gradient (ca. 0.1 m m-1) of the main channel there was no systematic downstream sorting in sediment deposits in the catchment. This is due to debris flow processes operating throughout the stream network, with lateral inputs sustaining the process in low gradient channels, except in the most downstream reaches where the flow transitioned towards hyper-concentrated flow. Overall, a large proportion ( 88%) of the eroded fine fraction (<63 micron) exited the catchment, when compared to the overall ratio (55%) of erosion to deposition. The geomorphic legacy of this post-wildfire event depends on scale. In the lower channels (steam order 4-5), where erosion was nearly equal to deposition, the event had no real impact on total sediment volumes stored. In upper channels (stream orders < 3) erosion was widespread but deposition rates were low. So debris flows are really effective at removing sediment from headwaters, but at some scale (between 3th and 4th order channels) they are equally effective at depositing sediment. In these lower reaches the geomorphic legacy of the post-wildfire debris flow is about how channel sediment is distributed rather than how much volume is stored.

Open forum

NASA Technical Reports Server (NTRS)

1973-01-01

Some experiments on turbulent free shear layers in pressure gradients are discussed. Topics covered in the discussion include: (1) two dimensional vortex structures, (2) the effect of channel walls, and (3) the case of a mixing layer in pressure gradient.

How rice roots form their surrounding: Distinctive sub-zones of oxides, silicates and organic matter

NASA Astrophysics Data System (ADS)

Koelbl, Angelika; Mueller, Carsten; Hoeschen, Carmen; Lugmeier, Johann; Said-Pullicino, Daniel; Romani, Marco; Koegel-Knabner, Ingrid

2016-04-01

Most of the rice (Oryza sativa) worldwide is grown under flooded conditions in bunded fields (paddies). Inundation during long periods of the year leads to anoxic conditions in the soil. The rice plant is well adapted to these conditions by being able to transport oxygen via aerenchyma from the atmosphere to the roots. This plant mediated O2 transport also influences the adjacent soil. Driven by the O2 leakage into the rhizosphere, reddish ferric oxides and ferric hydroxides precipitate along the root channels. Thus, radial gradients of ferric Fe and with it co-precipitated organic substances form. Detailed investigations of element gradients on a submicron scale within the oxide coatings are still missing. Nano-scale secondary ion mass spectrometry (NanoSIMS) analyses can help to visualize and study the interplay of the various soil components at a submicron scale like, e.g., the attachment of organic material to minerals or the architecture of microstructures. The aim of the present study was to evaluate the composition and size of oxide coatings around rice roots concerning the distribution of organic matter and its spatial relation to oxides and silicates. Samples were taken from the plough pan of a paddy field close to the National Rice Research Centre, Castello d'Agogna (Pavia, Italy). Intact soil aggregates were air-dried, embedded in epoxy resin and then cut and polished in order to obtain a surface with low topography. Reflected-light microscopy was used (mm to μm scale) to visualize the aggregate architecture and to identify root channels in the embedded aggregate. In the next step, scanning electron microscopy (SEM) was applied to obtain images of high resolution and to define distinctive spots for subsequent NanoSIMS analyses. Using the Cameca NanoSIMS 50L at TU München, we simultaneously detected 12C-, 12C14N-, 28Si-, 32S-, 27Al16O- and 56Fe16O- at several areas around root channels in order to distinguish between organic material and different mineral particles (e.g. oxides, clay minerals). Beside single 40 x 40 μm sized spots, mosaics of 20 x 20 μm sized images were combined to investigate the region from the surface of the root channels into the soil matrix. The image data of all detected secondary ions was analysed using line scans and designation of regions of interest (ROI) to evaluate relative occurrences and spatial distributions. The results revealed that the oxic zone around rice roots can be subdivided in distinctive sub-zones. We identified a distinctive zone of approx. 20 μm around the root channels, where exclusively oxide-associated organic matter occurred. This zone can be clearly distinguished from a clay mineral-dominated zone. In addition, oxide-incrusted root cells revealed coexisting regions of Fe (hydr)oxides and Al-organic complexes.

Construction of oxygen and chemical concentration gradients in a single microfluidic device for studying tumor cell-drug interactions in a dynamic hypoxia microenvironment.

PubMed

Wang, Lei; Liu, Wenming; Wang, Yaolei; Wang, Jian-chun; Tu, Qin; Liu, Rui; Wang, Jinyi

2013-02-21

Recent microfluidic advancements in oxygen gradients have greatly promoted controllable oxygen-sensitive cellular investigations at microscale resolution. However, multi-gradient integration in a single microfluidic device for tissue-mimicking cell investigation is not yet well established. In this study, we describe a method that can generate oxygen and chemical concentration gradients in a single microfluidic device via the formation of an oxygen gradient in a chamber and a chemical concentration gradient between adjacent chambers. The oxygen gradient dynamics were systematically investigated, and were quantitatively controlled using simple exchange between the aerial oxygen and the oxygen-free conditions in the gas-permeable polydimethylsiloxane channel. Meanwhile, the chemical gradient dynamics was generated using a special channel-branched device. For potential medical applications of the established oxygen and chemical concentration gradients, a tumor cell therapy assessment was performed using two antitumor drugs (tirapazamine and bleomycin) and two tumor cell lines (human lung adenocarcinoma A549 cells and human cervical carcinoma HeLa cells). The results of the proof-of-concept experiment indicate the dose-dependent antitumor effect of the drugs and hypoxia-induced cytotoxicity of tirapazamine. We demonstrate that the integration of oxygen and chemical concentration gradients in a single device can be applied to investigating oxygen- and chemical-sensitive cell events, which can also be valuable in the development of multi-gradient generating procedures and specific drug screening.

Peripheral Nerve Stimulation Characteristics of an Asymmetric Head-Only Gradient Coil Compatible with a High-Channel-Count Receiver Array

PubMed Central

Lee, Seung-Kyun; Mathieu, Jean-Baptiste; Graziani, Dominic; Piel, Joseph; Budesheim, Eric; Fiveland, Eric; Hardy, Christopher J.; Tan, Ek Tsoon; Amm, Bruce; Foo, Thomas K.-F; Bernstein, Matt A.; Huston, John; Shu, Yunhong; Schenck, John F.

2015-01-01

Purpose To characterize peripheral nerve stimulation (PNS) of an asymmetric head-only gradient coil that is compatible with a commercial high-channel-count receive-only array. Methods Two prototypes of an asymmetric head-only gradient coil set, with 42-cm inner diameter, were constructed for brain imaging at 3T with maximum performance specifications of up to 85 mT/m and 708 T/m/s. 24 volunteer tests were performed to measure PNS thresholds with the transverse (X, left/right; Y, anterior/posterior) gradient coils of both prototypes. 14 volunteers were also tested for the Z-gradient PNS in the second prototype, and were additionally scanned with high-slew-rate EPI immediately after the PNS tests. Results For both prototypes, the Y-gradient PNS threshold was markedly higher than the X-gradient. The Z-gradient threshold was intermediate between those for the X- and Y-coils. Out of the 24 volunteer subjects, only two experienced Y-gradient PNS at 80 mT/m, 500 T/m/s. All volunteers underwent the EPI scan without PNS when the readout direction was set to A/P. Conclusion Measured PNS characteristics of asymmetric head-only gradient coil prototypes indicate that such coils, especially in the A/P direction, can be used for fast EPI readout in high-performance neuroimaging scans with substantially reduced PNS concerns compared to conventional whole-body gradient coils. PMID:26628078

Distinct regions that control ion selectivity and calcium-dependent activation in the bestrophin ion channel.

PubMed

Vaisey, George; Miller, Alexandria N; Long, Stephen B

2016-11-22

Cytoplasmic calcium (Ca 2+ ) activates the bestrophin anion channel, allowing chloride ions to flow down their electrochemical gradient. Mutations in bestrophin 1 (BEST1) cause macular degenerative disorders. Previously, we determined an X-ray structure of chicken BEST1 that revealed the architecture of the channel. Here, we present electrophysiological studies of purified wild-type and mutant BEST1 channels and an X-ray structure of a Ca 2+ -independent mutant. From these experiments, we identify regions of BEST1 responsible for Ca 2+ activation and ion selectivity. A "Ca 2+ clasp" within the channel's intracellular region acts as a sensor of cytoplasmic Ca 2+ . Alanine substitutions within a hydrophobic "neck" of the pore, which widen it, cause the channel to be constitutively active, irrespective of Ca 2+ . We conclude that the primary function of the neck is as a "gate" that controls chloride permeation in a Ca 2+ -dependent manner. In contrast to what others have proposed, we find that the neck is not a major contributor to the channel's ion selectivity. We find that mutation of a cytosolic "aperture" of the pore does not perturb the Ca 2+ dependence of the channel or its preference for anions over cations, but its mutation dramatically alters relative permeabilities among anions. The data suggest that the aperture functions as a size-selective filter that permits the passage of small entities such as partially dehydrated chloride ions while excluding larger molecules such as amino acids. Thus, unlike ion channels that have a single "selectivity filter," in bestrophin, distinct regions of the pore govern anion-vs.-cation selectivity and the relative permeabilities among anions.

Method for producing a thin sample band in a microchannel device

DOEpatents

Griffiths, Stewart K [Livermore, CA; Nilson, Robert H [Cardiff, CA

2004-08-03

The present invention improves the performance of microchannel systems for chemical and biological synthesis and analysis by providing a method and apparatus for producing a thin band of a species sample. Thin sample bands improve the resolution of microchannel separation processes, as well as many other processes requiring precise control of sample size and volume. The new method comprises a series of steps in which a species sample is manipulated by controlled transport through a junction formed at the intersection of four or more channels. A sample is first inserted into the end of one of these channels in the vicinity of the junction. Next, this sample is thinned by transport across the junction one or more times. During these thinning steps, flow enters the junction through one of the channels and exists through those remaining, providing a divergent flow field that progressively stretches and thins the band with each traverse of the junction. The thickness of the resulting sample band may be smaller than the channel width. Moreover, the thickness of the band may be varied and controlled by altering the method alone, without modification to the channel or junction geometries. The invention is applicable to both electroosmotic and electrophoretic transport, to combined electrokinetic transport, and to some special cases in which bulk fluid transport is driven by pressure gradients. It is further applicable to channels that are open, filled with a gel or filled with a porous or granular material.

Apparatus for producing a thin sample band in a microchannel system

DOEpatents

Griffiths, Stewart K [Livermore, CA; Nilson, Robert H [Cardiff, CA

2008-05-13

The present invention improves the performance of microchannel systems for chemical and biological synthesis and analysis by providing a method and apparatus for producing a thin band of a species sample. Thin sample bands improve the resolution of microchannel separation processes, as well as many other processes requiring precise control of sample size and volume. The new method comprises a series of steps in which a species sample is manipulated by controlled transport through a junction formed at the intersection of four or more channels. A sample is first inserted into the end of one of these channels in the vicinity of the junction. Next, this sample is thinned by transport across the junction one or more times. During these thinning steps, flow enters the junction through one of the channels and exists through those remaining, providing a divergent flow field that progressively stretches and thins the band with each traverse of the junction. The thickness of the resulting sample band may be smaller than the channel width. Moreover, the thickness of the band may be varied and controlled by altering the method alone, without modification to the channel or junction geometries. The invention is applicable to both electroosmotic and electrophoretic transport, to combined electrokinetic transport, and to some special cases in which bulk fluid transport is driven by pressure gradients. It is further applicable to channels that are open, filled with a gel or filled with a porous or granular material.

Bedrock hillslopes to deltas: New insights into landscape mechanics

NASA Astrophysics Data System (ADS)

Lamb, M. P.

2012-12-01

A powerful record of environmental history on Earth and other planets is preserved in landscapes and sedimentary deposits formed by erosion, transport and deposition of sediment. To understand this record and predict future landscape change, we need mechanistic theories for transport processes and morphodynamics. Significant progress has been made to develop and test transport laws in some settings including soil-mantled landscapes and modest gradient alluvial channels where conventional hydraulic and sediment-transport theories apply. Fundamental opportunities exist, however, to explore the physical limits of existing theories and develop new theories at the frontier of our knowledge base. In this presentation, I will describe recent case studies from sediment-source areas to depositional sinks designed to test the limits of existing transport theories and identify transitions in dominant geomorphic processes by pushing to steeper slopes, greater discharges, and dynamic boundary conditions. First, field measurements, laboratory experiments and theory suggest that sediment transport on steep, rocky hillslopes is different than on soil mantled landscapes, and may be controlled by vegetation dams and sediment release following wildfire. Second, laboratory experiments show that grain stability is enhanced in steep mountain channels compared to moderate gradient channels due to the coincident change in the ratio of flow depth to grain size, until the threshold for mass failure is surpassed. Third, field observations and theory indicate that canyons can be cut by extreme floods at rates that exceed typical river-incision rates by many orders of magnitude due to the transition from abrasion to plucking and toppling of jointed rock, with implications for megafloods on Mars. Finally, numerical modeling, laboratory experiments, and field work show that coastal rivers are coupled to their offshore plumes, and that this coupling may determine the size of deltas. These case studies illustrate that relevant processes, from turbulence to tectonics, act over a wide range of spatial and temporal scales. A major future opportunity I see is to integrate topographic and geochronologic constraints on landscape kinematics with field and laboratory experiments on process dynamics to build mechanistic transport theories applicable across human and geomorphic timescales.

Influence of alluvial cover and lithology on the adjustment characteristics of semi-alluvial bedrock channels

NASA Astrophysics Data System (ADS)

Ferguson, Sean P.; Rennie, Colin D.

2017-05-01

A growing body of research has focused on evaluating the adjustment characteristics of semi-alluvial channels containing proximate bedrock, mixed, and alluvial sections. Active orogens have been the focus of most empirical field-based studies with comparatively less focus on semi-alluvial bedrock channels located in other regions. In this study, we present an inventory of channel geometry data collected from semi-alluvial bedrock channels in Ontario and Québec, Canada, which are not subject to tectonic uplift. Data were sourced from a variety of physiographic settings, permitting evaluation of the influence of alluvial cover, lithology, and gradient on cross-sectional channel form. Our results show no substantial difference in channel width or scaling behaviour amongst bedrock, mixed, and alluvial channels included in our study, except for sedimentary bedrock channels virtually bare of alluvial cover that represent a uniquely wide, distinct subgroup. Channel gradient does not appear to exhibit any observable control on channel width amongst our study rivers, suggesting that sedimentary bedrock channels form a distinct subgroup because of lithology. Comparatively, the widths of our bedrock channels formed in igneous/metamorphic bedrock are comparable to the widths of mixed channels and alluvial channels for a given discharge and drainage area. Our findings also suggest that cross-sectional adjustment of sedimentary bedrock channels is achieved through lateral erosion of the channel banks and downward erosion of the channel bed, whereas cross-sectional adjustment of igneous/metamorphic bedrock is primarily achieved through downward erosion of the bed with limited lateral erosion of the banks.

The rate and pattern of bed incision and bank adjustment on the Colorado River in Glen Canyon downstream from Glen Canyon Dam, 1956-2000

USGS Publications Warehouse

Grams, P.E.; Schmidt, J.C.; Topping, D.J.

2007-01-01

Closure of Glen Canyon Dam in 1963 transformed the Colorado River by reducing the magnitude and duration of spring floods, increasing the magnitude of base flows, and trapping fine sediment delivered from the upper watershed. These changes caused the channel downstream in Glen Canyon to incise, armor, and narrow. This study synthesizes over 45 yr of channel-change measurements and demonstrates that the rate and style of channel adjustment are directly related to both natural processes associated with sediment deficit and human decisions about dam operations. Although bed lowering in lower Glen Canyon began when the first cofferdam was installed in 1959, most incision occurred in 1965 in conjunction with 14 pulsed high flows that scoured an average of 2.6 m of sediment from the center of the channel. The average grain size of bed material has increased from 0.25 mm in 1956 to over 20 mm in 1999. The magnitude of incision at riffles decreases with distance downstream from the dam, while the magnitude of sediment evacuation from pools is spatially variable and extends farther downstream. Analysis of bed-material mobility indicates that the increase in bed-material grain size and reduction in reach-average gradient are consistent with the transformation of an adjustable-bed alluvial river to a channel with a stable bed that is rarely mobilized. Decreased magnitude of peak discharges in the post-dam regime coupled with channel incision and the associated downward shifts of stage-discharge relations have caused sandbar and terrace erosion and the transformation of previously active sandbars and gravel bars to abandoned deposits that are no longer inundated. Erosion has been concentrated in a few pre-dam terraces that eroded rapidly for brief periods and have since stabilized. The abundance of abandoned deposits decreases downstream in conjunction with decreasing magnitude of shift in the stage-discharge relations. In the downstream part of the study area where riffles controlling channel elevation have not incised, channel narrowing has resulted from decreased magnitude of peak discharges and minor post-dam deposition. These physical changes to the aquatic and riparian systems have supported the establishment and success of an artifact ecosystem dominated by non-native species. Models for the channel response downstream from large dams typically consider factors such as the degree of sediment deficit, the pre-dam surface and subsurface grain size, and the magnitude of post-dam average flows. These results suggest that it is also necessary to consider (1) the possibility of variable responses among different channel elements and (2) the potential importance of exceptional flows resulting from management decisions. ?? 2007 Geological Society of America.

Complete energetic description of hydrokinetic turbine impact on flow channel dynamics

NASA Astrophysics Data System (ADS)

Brasseale, E.; Kawase, M.

2016-02-01

Energy budget analysis on tidal channels quantifies and demarcates the impacts of marine renewables on environmental fluid dynamics. Energy budget analysis assumes the change in total kinetic energy within a volume of fluid can be described by the work done by each force acting on the flow. In a numerically simulated channel, the balance between energy change and work done has been validated up to 5% error.The forces doing work on the flow include pressure, turbulent dissipation, and stress from the estuary floor. If hydrokinetic turbines are installed in an estuarine channel to convert tidal energy into usable power, the dynamics of the channel change. Turbines provide additional pressure work against the flow of the channel which will slow the current and lessen turbulent dissipation and bottom stress. These losses may negatively impact estuarine circulation, seafloor scour, and stratification.The environmental effects of turbine deployment have been quantified using a three dimensional, Reynolds-averaged, Navier-Stokes model of an idealized flow channel situated between the ocean and a large estuarine basin. The channel is five kilometers wide, twenty kilometers long and fifty meters deep, and resolved to a grid size of 10 meters by 10 meters by 1 meter. Tidal currents are simulated by an initial difference in sea surface height across the channel of 160 centimeters from the channel entrance to the channel exit. This creates a pressure gradient which drives flow through the channel. Tidal power turbines are represented as disks that force the channel in proportion to the strength of the current. Three tidal turbines twenty meters in diameters have been included in the model to simulate the impacts of a pilot scale test deployment.This study is the first to appreciate the energetic impact of marine renewables in a three dimensional model through the energy equation's constituent terms. This study provides groundwork for understanding and predicting the environmental impacts of marine renewables.

Engineering antiparallel charge-transfer cascades into supramolecular n/p-heterojunction photosystems: toward directional self-sorting on surfaces.

PubMed

Lista, Marco; Areephong, Jetsuda; Orentas, Edvinas; Charbonnaz, Pierre; Sakai, Naomi; Matile, Stefan

2012-01-01

This contribution describes recent progress made with the design, synthesis and evaluation of supramolecular architectures for artificial photosynthesis. Emphasis is on the possible introduction of antiparallel redox gradients into the co-axial hole- and electron-transporting channels of supramolecular n/p-heterojunctions, and on directional, uniform axial and alternate lateral self-sorting to get there. Recent results suggest that two-component gradients in both channels are sufficient for photoinduced charge separation over very long distances. Removal of one gradient leads to charge recombination at the usual critical distances, inversion of both gradients causes photocurrent inhibition. These promising results call for user-friendly, cheap and fast approaches to oriented multicomponent architectures on solid surfaces. However, the reduction of efforts devoted to covalent organic synthesis will have to be compensated by the development of strategic concepts on the supramolecular level to tackle basic questions such as self-sorting on surfaces.

Subglacial drainage patterns of Devon Island, Canada: detailed comparison of rivers and subglacial meltwater channels

NASA Astrophysics Data System (ADS)

Grau Galofre, Anna; Jellinek, A. Mark; Osinski, Gordon R.; Zanetti, Michael; Kukko, Antero

2018-04-01

Subglacial meltwater channels (N-channels) are attributed to erosion by meltwater in subglacial conduits. They exert a major control on meltwater accumulation at the base of ice sheets, serving as drainage pathways and modifying ice flow rates. The study of exposed relict subglacial channels offers a unique opportunity to characterize the geomorphologic fingerprint of subglacial erosion as well as study the structure and characteristics of ice sheet drainage systems. In this study we present detailed field and remote sensing observations of exposed subglacial meltwater channels in excellent preservation state on Devon Island (Canadian Arctic Archipelago). We characterize channel cross section, longitudinal profiles, and network morphologies and establish the spatial extent and distinctive characteristics of subglacial drainage systems. We use field-based GPS measurements of subglacial channel longitudinal profiles, along with stereo imagery-derived digital surface models (DSMs), and novel kinematic portable lidar data to establish a detailed characterization of subglacial channels in our field study area, including their distinction from rivers and other meltwater drainage systems. Subglacial channels typically cluster in groups of ˜ 10 channels and are oriented perpendicular to active or former ice margins. Although their overall direction generally follows topographic gradients, channels can be oblique to topographic gradients and have undulating longitudinal profiles. We also observe that the width of first-order tributaries is 1 to 2 orders of magnitude larger than in Devon Island river systems and approximately constant. Furthermore, our findings are consistent with theoretical expectations drawn from analyses of flow driven by gradients in effective water pressure related to variations in ice thickness. Our field and remote sensing observations represent the first high-resolution study of the subglacial geomorphology of the high Arctic, and provide quantitative and qualitative descriptions of subglacial channels that revisit well-established field identification guidelines. Distinguishing subglacial channels in topographic data is critical for understanding the emergence, geometry, and extent of channelized meltwater systems and their role in ice sheet drainage. The final aim of this study is to facilitate the identification of subglacial channel networks throughout the globe by using remote sensing techniques, which will improve the detection of these systems and help to build understanding of the underlying mechanics of subglacial channelized drainage.

Suspended sediment transport under estuarine tidal channel conditions

USGS Publications Warehouse

Sternberg, R.W.; Kranck, K.; Cacchione, D.A.; Drake, D.E.

1988-01-01

A modified version of the GEOPROBE tripod has been used to monitor flow conditions and suspended sediment distribution in the bottom boundary layer of a tidal channel within San Francisco Bay, California. Measurements were made every 15 minutes over three successive tidal cycles. They included mean velocity profiles from four electromagnetic current meters within 1 m of the seabed; mean suspended sediment concentration profiles from seven miniature nephelometers operated within 1 m of the seabed; near-bottom pressure fluctuations; vertical temperature gradient; and bottom photographs. Additionally, suspended sediment was sampled from four levels within 1 m of the seabed three times during each successive flood and ebb cycle. While the instrument was deployed, STD-nephelometer measurements were made throughout the water column, water samples were collected each 1-2 hours, and bottom sediment was sampled at the deployment site. From these measurements, estimates were made of particle settling velocity (ws) from size distributions of the suspended sediment, friction velocity (U*) from the velocity profiles, and reference concentration (Ca) was measured at z = 20 cm. These parameters were used in the suspended sediment distribution equations to evaluate their ability to predict the observed suspended sediment profiles. Three suspended sediment particle conditions were evaluated: (1) individual particle size in the 4-11 ?? (62.5-0.5 ??m) range with the reference concentration Ca at z = 20 cm (C??), (2) individual particle size in the 4-6 ?? size range, flocs representing the 7-11 ?? size range with the reference concentration Ca at z = 20 cm (Cf), and (3) individual particle size in the 4-6 ?? size range, flocs representing the 7-11 ?? size range with the reference concentration predicted as a function of the bed sediment size distribution and the square of the excess shear stress. In addition, computations of particle flux were made in order to show vertical variations in horizontal mass flux for varying flow conditions. ?? 1988.

A pressure-gradient mechanism for vortex shedding in constricted channels

PubMed Central

Boghosian, M. E.; Cassel, K. W.

2013-01-01

Numerical simulations of the unsteady, two-dimensional, incompressible Navier–Stokes equations are performed for a Newtonian fluid in a channel having a symmetric constriction modeled by a two-parameter Gaussian distribution on both channel walls. The Reynolds number based on inlet half-channel height and mean inlet velocity ranges from 1 to 3000. Constriction ratios based on the half-channel height of 0.25, 0.5, and 0.75 are considered. The results show that both the Reynolds number and constriction geometry have a significant effect on the behavior of the post-constriction flow field. The Navier–Stokes solutions are observed to experience a number of bifurcations: steady attached flow, steady separated flow (symmetric and asymmetric), and unsteady vortex shedding downstream of the constriction depending on the Reynolds number and constriction ratio. A sequence of events is described showing how a sustained spatially growing flow instability, reminiscent of a convective instability, leads to the vortex shedding phenomenon via a proposed streamwise pressure-gradient mechanism. PMID:24399860

Characterization of the Navy Fan Channel-to-Lobe Transition: Geomorphology, Gradient, and Structure Imaged through High-Resolution AUV Bathymetry

NASA Astrophysics Data System (ADS)

Carvajal, C.; Paull, C. K.; Caress, D. W.; Anderson, K.; Lundsten, E. M.; Gwiazda, R.; Fildani, A.; Dykstra, M.; McGann, M.; Maier, K. L.; Herguera, J. C.

2016-12-01

Channel to lobe transition zones (CLTZ) are elusive sectors of the seafloor. They record complex interactions between sediment-gravity flows, flow confinement, and gradient that can result in contrasting geomorphologies. If present, structural controls can add additional intricacies. We illustrate such complexities in the Navy Fan CLTZ offshore California/Mexico using AUV-collected high-resolution (1x1x0.25 m) bathymetry and chirp profiles. The AUV bathymetry images the fine scale details of the seafloor, otherwise unresolved in surface-ship-mounted multibeam bathymetry. Three morphological areas standout that in a direction transverse to sediment transport are: 1) An unconfined area with variable but overall steep gradients (0.5o-1.7o), and considerable erosion shown by numerous large scours that truncate underlying strata. These scours are elongate (<500x180 m), deep (<18 m), asymmetric (steeper proximally), and more prominent along steeper gradients; 2) An area of moderate confinement along a smoother, gentler gradient (0.2o-0.5o; 0.9o locally). This area is 8 km long with a channel (WxD: 233x11 m) that transitions basinwards to low confinement (WxD: 1000x4 m); and 3) An area with an escarpment (<25 m high, <19o) and ridge of the San Clemente Fault. We hypothesize that the erosional morphologies of the unconfined areas reflect swifter turbidity currents due to high gradients, which resulted from relief along the San Clemente Fault and probably from differential seafloor aggradation. In the moderate confinement area, the smoother and gentler seafloor may be related to more efficient sediment dispersal able to transfer/deposit sediment to heal structural relief (though not completely) while avoiding significant local aggradation, hence preventing major gradient build up. In the faulted area, the steep and prominent structure reroutes the sediments. The findings of this study have broad application to any seafloor areas with rapid changes of gradient.

Chansporter complexes in cell signaling.

PubMed

Abbott, Geoffrey W

2017-09-01

Ion channels facilitate diffusion of ions across cell membranes for such diverse purposes as neuronal signaling, muscular contraction, and fluid homeostasis. Solute transporters often utilize ionic gradients to move aqueous solutes up their concentration gradient, also fulfilling a wide variety of tasks. Recently, an increasing number of ion channel-transporter ('chansporter') complexes have been discovered. Chansporter complex formation may overcome what could otherwise be considerable spatial barriers to rapid signal integration and feedback between channels and transporters, the ions and other substrates they transport, and environmental factors to which they must respond. Here, current knowledge in this field is summarized, covering both heterologous expression structure/function findings and potential mechanisms by which chansporter complexes fulfill contrasting roles in cell signaling in vivo. © 2017 Federation of European Biochemical Societies.

Centrifugal precipitation chromatography

PubMed Central

Ito, Yoichiro; Lin, Qi

2009-01-01

Centrifugal precipitation chromatography separates analytes according their solubility in ammonium sulfate (AS) solution and other precipitants. The separation column is made from a pair of long spiral channels partitioned with a semipermeable membrane. In a typical separation, concentrated ammonium sulfate is eluted through one channel while water is eluted through the other channel in the opposite direction. The countercurrent process forms an exponential AS concentration gradient through the water channel. Consequently, protein samples injected into the water channel is subjected to a steadily increasing AS concentration and at the critical AS concentration they are precipitated and deposited in the channel bed by the centrifugal force. Then the chromatographic separation is started by gradually reducing the AS concentration in the AS channel which lowers the AS gradient concentration in the water channel. This results in dissolution of deposited proteins which are again precipitated at an advanced critical point as they move through the channel. Consequently, proteins repeat precipitation and dissolution through a long channel and finally eluted out from the column in the order of their solubility in the AS solution. The present method has been successfully applied to a number of analytes including human serum proteins, recombinant ketosteroid isomerase, carotenoid cleavage enzymes, plasmid DNA, polysaccharide, polymerized pigments, PEG-protein conjugates, etc. The method is capable to single out the target species of proteins by affinity ligand or immunoaffinity separation. PMID:19541553

Elevational gradient in clutch size of Red-faced Warblers

USGS Publications Warehouse

Dillon, Kristen G.; Conway, Courtney J.

2015-01-01

Our understanding of life history evolution has benefited from debates regarding the underlying causes, and geographic ubiquity, of spatial patterns in avian clutch sizes. Past studies have revealed that birds lay smaller clutch sizes at higher elevation. However, in most previous studies, investigators have failed to adequately control for elevational differences in breeding phenology. To better understand the elevational gradient in avian clutch size, we need to know how clutch size changes across the entire elevational breeding range of a species (i.e., the shape of the relationship between elevation and clutch size), and whether the elevational gradient in clutch size is merely an artifact of elevational gradients in breeding phenology or breeding season length. We examined the relationship between breeding elevation and clutch size of Red-faced Warblers (Cardellina rubrifrons) along a 1000-m elevational gradient in Arizona. Our objectives were to determine how clutch size changed with elevation, and if the relationship between clutch size and elevation merely reflected elevational changes in breeding season length or phenology. The proportion of 5-egg clutches decreased and the proportion of 3- and 4-egg clutches increased non-linearly with increasing elevation, even after controlling for the elevational gradient in nest initiation date. Thus, average clutch size declined across the elevational breeding range of Red-faced Warblers, but this decline was not due to elevational variation in breeding phenology. Timing of breeding changed, but the duration of the breeding season did not change appreciably across the elevational gradient. Hence, elevational differences in breeding season length or breeding phenology cannot explain why Red-faced Warblers (and perhaps other birds) breeding at higher elevations have smaller clutches.

Phase locking of a seven-channel continuous wave fibre laser system by a stochastic parallel gradient algorithm

DOE Office of Scientific and Technical Information (OSTI.GOV)

Volkov, M V; Garanin, S G; Dolgopolov, Yu V

2014-11-30

A seven-channel fibre laser system operated by the master oscillator – multichannel power amplifier scheme is the phase locked using a stochastic parallel gradient algorithm. The phase modulators on lithium niobate crystals are controlled by a multichannel electronic unit with the microcontroller processing signals in real time. The dynamic phase locking of the laser system with the bandwidth of 14 kHz is demonstrated, the time of phasing is 3 – 4 ms. (fibre and integrated-optical structures)

Relocalization of the calcium gradient and a dihydropyridine receptor is involved in upward bending by bulging of Chara protonemata, but not in downward bending by bowing of Chara rhizoids.

PubMed

Braun, M; Richter, P

1999-10-01

The localization of cytoplasmic free calcium and a dihydropyridine (DHP) receptor, a putative calcium channel, was recorded during the opposite graviresponses of tip-growing Chara rhizoids and Chara protonemata by using the calcium indicator Calcium Crimson and a fluorescently labeled dihydropyridine (FL-DHP). In upward (negatively gravitropically) growing protonemata and downward (positively gravitropically) growing rhizoids, a steep Ca2+ gradient and DHP receptors were found to be symmetrically localized in the tip. However, the localization of the Ca2+ gradient and DHP receptors differed considerably during the gravitropic responses upon horizontal positioning of the two cell types. During the graviresponse of rhizoids, a continuous bowing downward by differential flank growth, the Ca2+ gradient and DHP receptors remained symmetrically localized in the tip at the centre of growth. However, after tilting protonemata into a horizontal position, there was a drastic displacement of the Ca2+ gradient and FL-DHP to the upper flank of the apical dome. This displacement occurred after the apical intrusion and sedimentation of the statoliths but clearly before the change in the growth direction became evident. In protonemata, the reorientation of the growth direction started with the appearance of a bulge on that site of the upper flank which was predicted by the asymmetrically displaced Ca2+ gradient. With the upward shift of the cell tip, which is suggested to result from a statolith-induced displacement of the growth centre, the Ca2+ gradient and DHP receptors became symmetrically relocalized in the apical dome. No major asymmetrical rearrangement was observed during the following phase of gravitropic curvature which is characterized by slower rates of bending. Labeling with FL-DHP was completely inhibited by a non-fluorescently labeled dihydropyridine. From these results it is suggested that FL-DHP labels calcium channels in rhizoids and protonemata. In rhizoids, positive gravitropic curvature is caused by differential growth limited to the opposite subapical flanks of the apical dome, a process which does not involve displacement of the growth centre, the calcium gradient or calcium channels. In protonemata, however, it is proposed that a statolith-induced asymmetrical relocalization of calcium channels and the Ca2+ gradient precedes, and might mediate, the rearrangement of the centre of growth, most likely by the displacement of the Spitzenkorper, to the upper flank, which results in the negative gravitropic reorientation of the growth direction.

Drag reduction in silica nanochannels induced by graphitic wall coatings

NASA Astrophysics Data System (ADS)

Wagemann, Enrique; Walther, J. H.; Zambrano, Harvey A.

2017-11-01

Transport of water in hydrophilic nanopores is of significant technological and scientific interest. Water flow through hydrophilic nanochannels is known to experience enormous hydraulic resistance. Therefore, drag reduction is essential for the development of highly efficient nanofluidic devices. In this work, we propose the use of graphitic materials as wall coatings in hydrophilic silica nanopores. Specifically, by conducting atomistic simulations, we investigate the flow inside slit and cylindrical silica channels with walls coated with graphene (GE) layers and carbon nanotubes (CNTs), respectively. We develop realistic force fields to simulate the systems of interest and systematically, compare flow rates in coated and uncoated nanochannels under different pressure gradients. Moreover, we assess the effect that GE and CNT translucencies to wettability have on water hydrodynamics in the nanochannels. The influence of channel size is investigated by systematically varying channel heights and nanopore diameters. In particular, we present the computed water density and velocity profiles, volumetric flow rates, slip lengths and flow enhancements, to clearly demonstrate the drag reduction capabilities of graphitic wall coatings. We wish to thank partial funding from CRHIAM Conicyt/ Fondap Project 15130015 and computational support from DTU and NLHPC (Chile).

Floodplain geomorphic processes and environmental impacts of human alteration along coastal plain rivers, USA

USGS Publications Warehouse

Hupp, C.R.; Pierce, Aaron R.; Noe, G.B.

2009-01-01

Human alterations along stream channels and within catchments have affected fluvial geomorphic processes worldwide. Typically these alterations reduce the ecosystem services that functioning floodplains provide; in this paper we are concerned with the sediment and associated material trapping service. Similarly, these alterations may negatively impact the natural ecology of floodplains through reductions in suitable habitats, biodiversity, and nutrient cycling. Dams, stream channelization, and levee/canal construction are common human alterations along Coastal Plain fluvial systems. We use three case studies to illustrate these alterations and their impacts on floodplain geomorphic and ecological processes. They include: 1) dams along the lower Roanoke River, North Carolina, 2) stream channelization in west Tennessee, and 3) multiple impacts including canal and artificial levee construction in the central Atchafalaya Basin, Louisiana. Human alterations typically shift affected streams away from natural dynamic equilibrium where net sediment deposition is, approximately, in balance with net erosion. Identification and understanding of critical fluvial parameters (e.g., stream gradient, grain-size, and hydrography) and spatial and temporal sediment deposition/erosion process trajectories should facilitate management efforts to retain and/or regain important ecosystem services. ?? 2009, The Society of Wetland Scientists.

Inertial migration of elastic particles in a pressure-driven power-law fluid

NASA Astrophysics Data System (ADS)

Bowie, Samuel; Alexeev, Alexander

2016-11-01

Using three-dimensional computer simulations, we study the cross-stream migration of deformable particles in a channel filled with a non-Newtonian fluid driven by a pressure gradient. Our numerical approach integrates lattice Boltzmann method and lattice spring method in order to model fluid structural interactions of the elastic particle and the surrounding power fluid in the channel. The particles are modeled as elastic shells filled with a viscous fluid that are initially spherical. We focus on the regimes where the inertial effects cannot be neglected and cause cross-stream drift of particles. We probe the flow with different power law indexes including both the shear thickening and thinning fluids. We also examine migration of particles of with different elasticity and relative size. To isolate the non-Newtonian effects on particle migration, we compare the results with the inertial migration results found in the case where the channel is filled with a simple Newtonian fluid. The results can be useful for applications requiring high throughput separation, sorting, and focusing of both synthetic particles and biological cells in microfluidic devices. Financial support provided by National Science Foundation (NSF) Grant No. CMMI1538161.

Temporal dynamics of urbanization-driven environmental changes explored by metal contamination in surface sediments in a restoring urban wetland park.

PubMed

Ma, Jun; Liu, Yi; Yu, Guangbin; Li, Hongbo; Yu, Shen; Jiang, Yueping; Li, Guilin; Lin, Jinchang

2016-05-15

Spatial patterns of metal distribution along urban-rural or multi-city gradients indicate that the urbanization process directly lead to metal enrichment and contamination in the environments. However, it has not yet looked at homogenization dynamics of an urban-rural gradient pattern over time with urbanization process in an area. This study monitored anthropogenic metals (Cr, Cu, Pb, and Zn) in surface sediments from channels of a newly-opened National Wetland Park to elucidate the urbanization-driven dissolution of urban-rural gradient pattern between 2008 and 2011. Sixty-eight surface sediment samples were taken from these channels in July of both 2008 and 2011. Results showed that a spatial distribution pattern of total metal contents along the gradient of urbanization influence, evident in 2008, was homogenized in 2011 with the area development. The lead stable isotope ratio analysis identified anthropogenic Pb origins from vehicular exhausts, cements, and coal flying ashes, which elevated metal contents in the inner channels via atmospheric deposition. Specific hazard quotients of the metal contamination in surface sediment were also assessed and enhanced over time in the study wetland park. These findings suggest that emissions from traffic, construction, and energy generation contribute metal loadings in the urbanizing environment. Copyright © 2016 Elsevier B.V. All rights reserved.

Stability of exact solutions describing two-layer flows with evaporation at the interface

NASA Astrophysics Data System (ADS)

Bekezhanova, V. B.; Goncharova, O. N.

2016-12-01

A new exact solution of the equations of free convection has been constructed in the framework of the Oberbeck-Boussinesq approximation of the Navier-Stokes equations. The solution describes the joint flow of an evaporating viscous heat-conducting liquid and gas-vapor mixture in a horizontal channel. In the gas phase the Dufour and Soret effects are taken into account. The consideration of the exact solution allows one to describe different classes of flows depending on the values of the problem parameters and boundary conditions for the vapor concentration. A classification of solutions and results of the solution analysis are presented. The effects of the external disturbing influences (of the liquid flow rates and longitudinal gradients of temperature on the channel walls) on the stability characteristics have been numerically studied for the system HFE7100-nitrogen in the common case, when the longitudinal temperature gradients on the boundaries of the channel are not equal. In the system both monotonic and oscillatory modes can be formed, which damp or grow depending on the values of the initial perturbations, flow rates and temperature gradients. Hydrodynamic perturbations are most dangerous under large gas flow rates. The increasing oscillatory perturbations are developed due to the thermocapillary effect under large longitudinal gradients of temperature. The typical forms of the disturbances are shown.

A compact tunable polarized X-ray source based on laser-plasma helical undulators

PubMed Central

Luo, J.; Chen, M.; Zeng, M.; Vieira, J.; Yu, L. L.; Weng, S. M.; Silva, L. O.; Jaroszynski, D. A.; Sheng, Z. M.; Zhang, J.

2016-01-01

Laser wakefield accelerators have great potential as the basis for next generation compact radiation sources because of their extremely high accelerating gradients. However, X-ray radiation from such devices still lacks tunability, especially of the intensity and polarization distributions. Here we propose a tunable polarized radiation source based on a helical plasma undulator in a plasma channel guided wakefield accelerator. When a laser pulse is initially incident with a skew angle relative to the channel axis, the laser and accelerated electrons experience collective spiral motions, which leads to elliptically polarized synchrotron-like radiation with flexible tunability on radiation intensity, spectra and polarization. We demonstrate that a radiation source with millimeter size and peak brilliance of 2 × 1019 photons/s/mm2/mrad2/0.1% bandwidth can be made with moderate laser and electron beam parameters. This brilliance is comparable with third generation synchrotron radiation facilities running at similar photon energies, suggesting that laser plasma based radiation sources are promising for advanced applications. PMID:27377126

Relaxation of microparticles exposed to hydrodynamic forces in microfluidic conduits.

PubMed

Janča, Josef; Halabalová, Věra; Polášek, Vladimír; Vašina, Martin; Menshikova, Anastasia Yu

2011-02-01

The behavior of microparticles exposed to gravitational and lift forces and to the velocity gradient in flow velocity profile formed in microfluidic conduits is studied from the viewpoint of the transient period (the relaxation) between the moment at which a particle starts to be transported by the hydrodynamic flow and the time at which it reaches an equilibrium position, characterized by a balance of all active forces. The theoretical model allowing the calculation of the relaxation time is proposed. The numerical calculus based on the proposed model is compared with the experimental data obtained under different experimental conditions, namely, for different lengths of microfluidic channels, different average linear velocities of the carrier liquid, and different sizes and densities of the particles used in the study. The results are important for the optimization of microfluidic separation units such as microthermal field-flow fractionation channels in which the separation or manipulation of the microparticles of various origin, synthetic, natural, biological, etc., is performed under similar experimental conditions but by applying an additional thermodynamic force.

Unifying latitudinal gradients in range size and richness across marine and terrestrial systems

PubMed Central

Tomašových, Adam; Kennedy, Jonathan D.; Betzner, Tristan J.; Kuehnle, Nicole Bitler; Edie, Stewart; Kim, Sora; Supriya, K.; White, Alexander E.; Rahbek, Carsten; Huang, Shan; Price, Trevor D.; Jablonski, David

2016-01-01

Many marine and terrestrial clades show similar latitudinal gradients in species richness, but opposite gradients in range size—on land, ranges are the smallest in the tropics, whereas in the sea, ranges are the largest in the tropics. Therefore, richness gradients in marine and terrestrial systems do not arise from a shared latitudinal arrangement of species range sizes. Comparing terrestrial birds and marine bivalves, we find that gradients in range size are concordant at the level of genera. Here, both groups show a nested pattern in which narrow-ranging genera are confined to the tropics and broad-ranging genera extend across much of the gradient. We find that (i) genus range size and its variation with latitude is closely associated with per-genus species richness and (ii) broad-ranging genera contain more species both within and outside of the tropics when compared with tropical- or temperate-only genera. Within-genus species diversification thus promotes genus expansion to novel latitudes. Despite underlying differences in the species range-size gradients, species-rich genera are more likely to produce a descendant that extends its range relative to the ancestor's range. These results unify species richness gradients with those of genera, implying that birds and bivalves share similar latitudinal dynamics in net species diversification. PMID:27147094

Effects of spatial gradients in thermophysical properties on the topology of turbulence in heated channel flow of supercritical fluids

NASA Astrophysics Data System (ADS)

Azih, Chukwudi; Yaras, Metin I.

2018-01-01

The current literature suggests that large spatial gradients of thermophysical properties, which occur in the vicinity of the pseudo-critical thermodynamic state, may result in significant variations in forced-convection heat transfer rates. Specifically, these property gradients induce inertia- and buoyancy-driven phenomena that may enhance or deteriorate the turbulence-dominated heat convection process. Through direct numerical simulations, the present study investigates the role of coherent flow structures in channel geometries for non-buoyant and buoyant flows of supercritical water, with buoyant configurations involving wall-normal oriented gravitational acceleration and downstream-oriented gravitational acceleration. This sequence of simulations enables the evaluation of the relative contributions of inertial and buoyancy phenomena to heat transfer variations. In these simulations, the state of the working fluid is in the vicinity of the pseudo-critical point. The uniform wall heat flux and the channel mass flux are specified such that the heat to mass flux ratio is 3 kJ/kg, with an inflow Reynolds number of 12 000 based on the channel hydraulic diameter, the area-averaged inflow velocity, and fluid properties evaluated at the bulk temperature and pressure of the inflow plane. In the absence of buoyancy forces, notable reductions in the density and viscosity in close proximity of the heated wall are observed to promote generation of small-scale vortices, with resultant breakdown into smaller scales as they interact with preexisting larger near-wall vortices. This interaction results in a reduction in the overall thermal mixing at particular wall-normal regions of the channel. Under the influence of wall-normal gravitational acceleration, the wall-normal density gradients are noted to enhance ejection motions due to baroclinic vorticity generation on the lower wall, thus providing additional wall-normal thermal mixing. Along the upper wall, the same mechanism generates streamwise vorticity of the opposing sense of rotation in the close vicinity to the respective legs of the hairpin vortices causing a net reduction in thermal mixing. Finally, in the case of downstream-oriented gravitational acceleration, baroclinic vorticity generation as per spanwise density gradients causes additional wall-normal thermal mixing by promoting larger-scale ejection and sweep motions.

Control of Internal Transport Barriers in Magnetically Confined Fusion Plasmas

NASA Astrophysics Data System (ADS)

Panta, Soma; Newman, David; Sanchez, Raul; Terry, Paul

2016-10-01

In magnetic confinement fusion devices the best performance often involves some sort of transport barriers to reduce the energy and particle flow from core to edge. Those barriers create gradients in the temperature and density profiles. If gradients in the profiles are too steep that can lead to instabilities and the system collapses. Control of these barriers is therefore an important challenge for fusion devices (burning plasmas). In this work we focus on the dynamics of internal transport barriers. Using a simple 7 field transport model, extensively used for barrier dynamics and control studies, we explore the use of RF heating to control the local gradients and therefore the growth rates and shearing rates for barrier initiation and control in self-heated fusion plasmas. Ion channel barriers can be formed in self-heated plasmas with some NBI heating but electron channel barriers are very sensitive. They can be formed in self-heated plasmas with additional auxiliary heating i.e. NBI and radio-frequency(RF). Using RF heating on both electrons and ions at proper locations, electron channel barriers along with ion channel barriers can be formed and removed demonstrating a control technique. Investigating the role of pellet injection in controlling the barriers is our next goal. Work supported by DOE Grant DE-FG02-04ER54741.

Electro-osmotic flow of couple stress fluids in a micro-channel propagated by peristalsis

NASA Astrophysics Data System (ADS)

Tripathi, Dharmendra; Yadav, Ashu; Anwar Bég, O.

2017-04-01

A mathematical model is developed for electro-osmotic peristaltic pumping of a non-Newtonian liquid in a deformable micro-channel. Stokes' couple stress fluid model is employed to represent realistic working liquids. The Poisson-Boltzmann equation for electric potential distribution is implemented owing to the presence of an electrical double layer (EDL) in the micro-channel. Using long wavelength, lubrication theory and Debye-Huckel approximations, the linearized transformed dimensionless boundary value problem is solved analytically. The influence of electro-osmotic parameter (inversely proportional to Debye length), maximum electro-osmotic velocity (a function of external applied electrical field) and couple stress parameter on axial velocity, volumetric flow rate, pressure gradient, local wall shear stress and stream function distributions is evaluated in detail with the aid of graphs. The Newtonian fluid case is retrieved as a special case with vanishing couple stress effects. With increasing the couple stress parameter there is a significant increase in the axial pressure gradient whereas the core axial velocity is reduced. An increase in the electro-osmotic parameter both induces flow acceleration in the core region (around the channel centreline) and it also enhances the axial pressure gradient substantially. The study is relevant in the simulation of novel smart bio-inspired space pumps, chromatography and medical micro-scale devices.

Fluid mixing in droplet-based microfluidics with T junction and convergent-divergent sinusoidal microchannels.

PubMed

Yang, Li; Li, Shanshan; Liu, Jixiao; Cheng, Jingmeng

2018-02-01

To explore and utilize the advantages of droplet-based microfluidics, hydrodynamics, and mixing process within droplets traveling though the T junction channel and convergent-divergent sinusoidal microchannels are studied by numerical simulations and experiments, respectively. In the T junction channel, the mixing efficiency is significantly influenced by the twirling effect, which controls the initial distributions of the mixture during the droplet formation stage. Therefore, the internal recirculating flow can create a convection mechanism, thus improving mixing. The twirling effect is noticeably influenced by the velocity of the continuous phase; in the sinusoidal channel, the Dean vortices and droplet deformation are induced by centrifugal force and alternative velocity gradient, thus enhancing the mixing efficiency. The best mixing occurred when the droplet size is comparable with the channel width. Finally, we propose a unique optimized structure, which includes a T junction inlet joined to a sinusoidal channel. In this structure, the mixing of fluids in the droplets follows two routes: One is the twirling effect and symmetric recirculation flow in the straight channel. The other is the asymmetric recirculation and droplet deformation in the winding and variable cross-section. Among the three structures, the optimized structure has the best mixing efficiency at the shortest mixing time (0.25 ms). The combination of the twirling effect, variable cross-section effect, and Dean vortices greatly intensifies the chaotic flow. This study provides the insight of the mixing process and may benefit the design and operations of droplet-based microfluidics. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Miniaturized Ka-Band Dual-Channel Radar

NASA Technical Reports Server (NTRS)

Hoffman, James P.; Moussessian, Alina; Jenabi, Masud; Custodero, Brian

2011-01-01

Smaller (volume, mass, power) electronics for a Ka-band (36 GHz) radar interferometer were required. To reduce size and achieve better control over RFphase versus temperature, fully hybrid electronics were developed for the RF portion of the radar s two-channel receiver and single-channel transmitter. In this context, fully hybrid means that every active RF device was an open die, and all passives were directly attached to the subcarrier. Attachments were made using wire and ribbon bonding. In this way, every component, even small passives, was selected for the fabrication of the two radar receivers, and the devices were mounted relative to each other in order to make complementary components isothermal and to isolate other components from potential temperature gradients. This is critical for developing receivers that can track each other s phase over temperature, which is a key mission driver for obtaining ocean surface height. Fully hybrid, Ka-band (36 GHz) radar transmitter and dual-channel receiver were developed for spaceborne radar interferometry. The fully hybrid fabrication enables control over every aspect of the component selection, placement, and connection. Since the two receiver channels must track each other to better than 100 millidegrees of RF phase over several minutes, the hardware in the two receivers must be "identical," routed the same (same line lengths), and as isothermal as possible. This level of design freedom is not possible with packaged components, which include many internal passive, unknown internal connection lengths/types, and often a single orientation of inputs and outputs.

A fourth gradient to overcome slice dependent phase effects of voxel-sized coils in planar arrays.

PubMed

Bosshard, John C; Eigenbrodt, Edwin P; McDougall, Mary P; Wright, Steven M

2010-01-01

The signals from an array of densely spaced long and narrow receive coils for MRI are complicated when the voxel size is of comparable dimension to the coil size. The RF coil causes a phase gradient across each voxel, which is dependent on the distance from the coil, resulting in a slice dependent shift of k-space. A fourth gradient coil has been implemented and used with the system's gradient set to create a gradient field which varies with slice. The gradients are pulsed together to impart a slice dependent phase gradient to compensate for the slice dependent phase due to the RF coils. However the non-linearity in the fourth gradient which creates the desired slice dependency also results in a through-slice phase ramp, which disturbs normal slice refocusing and leads to additional signal cancelation and reduced field of view. This paper discusses the benefits and limitations of using a fourth gradient coil to compensate for the phase due to RF coils.

Regional Curve Development and Use in Stream Restoration and Hydrologic Assessment in High Gradient Headwater Streams

EPA Pesticide Factsheets

Introduction to Regional Curves including; regressions relating bankfull channelcharacteristics to drainage area, providing estimates of bankfull discharge and channel geometry, validating the selection of the bankfull channel as determined in the field

Rapid concentration of deoxyribonucleic acid via Joule heating induced temperature gradient focusing in poly-dimethylsiloxane microfluidic channel.

PubMed

Ge, Zhengwei; Wang, Wei; Yang, Chun

2015-02-09

This paper reports rapid microfluidic electrokinetic concentration of deoxyribonucleic acid (DNA) with the Joule heating induced temperature gradient focusing (TGF) by using our proposed combined AC and DC electric field technique. A peak of 480-fold concentration enhancement of DNA sample is achieved within 40s in a simple poly-dimethylsiloxane (PDMS) microfluidic channel of a sudden expansion in cross-section. Compared to a sole DC field, the introduction of an AC field can reduce DC field induced back-pressure and produce sufficient Joule heating effects, resulting in higher concentration enhancement. Within such microfluidic channel structure, negative charged DNA analytes can be concentrated at a location where the DNA electrophoretic motion is balanced with the bulk flow driven by DC electroosmosis under an appropriate temperature gradient field. A numerical model accounting for a combined AC and DC field and back-pressure driven flow effects is developed to describe the complex Joule heating induced TGF processes. The experimental observation of DNA concentration phenomena can be explained by the numerical model. Copyright © 2014 Elsevier B.V. All rights reserved.

Effects of Sediment Patches on Sediment Transport Predictions in Steep Mountain Channels

NASA Astrophysics Data System (ADS)

Monsalve Sepulveda, A.; Yager, E.

2013-12-01

Bed surface patches occur in most gravel-bedded rivers and in steep streams can be divided between relatively immobile boulders and more mobile patches of cobbles and gravel. This spatial variability in grain size, roughness and sorting impact bed load transport by altering the relative local mobility of different grain sizes and creating complex local flow fields. Large boulders also bear a significant part of the total shear stress and we hypothesize that the remaining shear stress on a given mobile patch is a distribution of values that depend on the local topography, patch type and location relative to the large roughness elements and thalweg. Current sediment transport equations do not account for the variation in roughness, local flow and grain size distributions on and between patches and often use an area-weighted approach to obtain a representative grain size distribution and reach-averaged shear stress. Such equations also do not distinguish between active (patches where at least one grain size is in motion) and inactive patches or include the difference in mobility between patch classes as result of spatial shear stress distributions. To understand the effects of sediment patches on sediment transport in steep channels, we calculated the shear stress distributions over a range of patch classes in a 10% gradient step-pool stream. We surveyed the bed with a high density resolution (every 5 cm in horizontal and vertical directions over a 40 m long reach) using a total station and terrestrial LiDAR, mapped and classified patches by their grain size distributions, and measured water surface elevations and mean velocities for low to moderate flow events. Using these data we calibrated a quasi-three dimensional model (FaSTMECH) to obtain shear stress distributions over each patch for a range of flow discharges. We modified Parker's (1990) equations to use the calculated shear stress distribution, measured grain sizes, and a specific hiding function for each patch class, and then added the bedload fluxes for each patch to calculate the reach-averaged sediment transport rate. Sediment mobility in patches was highly dependent on the patch's class and location relative to the thalweg and large roughness elements. Compared to deterministic formulations, the use of distributions of shear stress improved predictions of bedload transport in steep mountain channels.

Skin Barrier and Calcium.

PubMed

Lee, Sang Eun; Lee, Seung Hun

2018-06-01

Epidermal barrier formation and the maintenance of barrier homeostasis are essential to protect us from the external environments and organisms. Moreover, impaired keratinocytes differentiation and dysfunctional skin barrier can be the primary causes or aggravating factors for many inflammatory skin diseases including atopic dermatitis and psoriasis. Therefore, understanding the regulation mechanisms of keratinocytes differentiation and skin barrier homeostasis is important to understand many skin diseases and establish an effective treatment strategy. Calcium ions (Ca 2+ ) and their concentration gradient in the epidermis are essential in regulating many skin functions, including keratinocyte differentiation, skin barrier formation, and permeability barrier homeostasis. Recent studies have suggested that the intracellular Ca 2+ stores such as the endoplasmic reticulum (ER) are the major components that form the epidermal calcium gradient and the ER calcium homeostasis is crucial for regulating keratinocytes differentiation, intercellular junction formation, antimicrobial barrier, and permeability barrier homeostasis. Thus, both Ca 2+ release from intracellular stores, such as the ER and Ca 2+ influx mechanisms are important in skin barrier. In addition, growing evidences identified the functional existence and the role of many types of calcium channels which mediate calcium flux in keratinocytes. In this review, the origin of epidermal calcium gradient and their role in the formation and regulation of skin barrier are focused. We also focus on the role of ER calcium homeostasis in skin barrier. Furthermore, the distribution and role of epidermal calcium channels, including transient receptor potential channels, store-operated calcium entry channel Orai1, and voltage-gated calcium channels in skin barrier are discussed.

Peripheral nerve stimulation characteristics of an asymmetric head-only gradient coil compatible with a high-channel-count receiver array.

PubMed

Lee, Seung-Kyun; Mathieu, Jean-Baptiste; Graziani, Dominic; Piel, Joseph; Budesheim, Eric; Fiveland, Eric; Hardy, Christopher J; Tan, Ek Tsoon; Amm, Bruce; Foo, Thomas K-F; Bernstein, Matt A; Huston, John; Shu, Yunhong; Schenck, John F

2016-12-01

To characterize peripheral nerve stimulation (PNS) of an asymmetric head-only gradient coil that is compatible with a commercial high-channel-count receive-only array. Two prototypes of an asymmetric head-only gradient coil set with a 42-cm inner diameter were constructed for brain imaging at 3T with maximum performance specifications of up to 85 mT/m and 708 T/m/s. Tests were performed in 24 volunteers to measure PNS thresholds with the transverse (x = left-right; y = anterior-posterior [A/P]) gradient coils of both prototypes. Fourteen of these 24 volunteers were also tested for the z-gradient PNS in the second prototype and were scanned with high-slew-rate echo planar imaging (EPI) immediately after the PNS tests. For both prototypes, the y-gradient PNS threshold was markedly higher than the x-gradient threshold. The z-gradient threshold was intermediate between those for the x- and y-coils. Of the 24 volunteers, only two experienced y-gradient PNS at 80 mT/m and 500 T/m/s. All volunteers underwent the EPI scan without PNS when the readout direction was set to A/P. Measured PNS characteristics of asymmetric head-only gradient coil prototypes indicate that such coils, especially in the A/P direction, can be used for fast EPI readout in high-performance neuroimaging scans with substantially reduced PNS concerns compared with conventional whole body gradient coils. Magn Reson Med 76:1939-1950, 2016. © 2015 International Society for Magnetic Resonance in Medicine. © 2015 International Society for Magnetic Resonance in Medicine.

GREAT: a gradient-based color-sampling scheme for Retinex.

PubMed

Lecca, Michela; Rizzi, Alessandro; Serapioni, Raul Paolo

2017-04-01

Modeling the local color spatial distribution is a crucial step for the algorithms of the Milano Retinex family. Here we present GREAT, a novel, noise-free Milano Retinex implementation based on an image-aware spatial color sampling. For each channel of a color input image, GREAT computes a 2D set of edges whose magnitude exceeds a pre-defined threshold. Then GREAT re-scales the channel intensity of each image pixel, called target, by the average of the intensities of the selected edges weighted by a function of their positions, gradient magnitudes, and intensities relative to the target. In this way, GREAT enhances the input image, adjusting its brightness, contrast and dynamic range. The use of the edges as pixels relevant to color filtering is justified by the importance that edges play in human color sensation. The name GREAT comes from the expression "Gradient RElevAnce for ReTinex," which refers to the threshold-based definition of a gradient relevance map for edge selection and thus for image color filtering.

Connectivity of Secondary Channels in the Floodplain of a Low-Gradient Midwestern U.S. Agricultural River

NASA Astrophysics Data System (ADS)

Czuba, J. A.; David, S. R.; Edmonds, D. A.

2016-12-01

Floodplains of low-gradient Midwestern U.S. agricultural rivers are commonly dissected by a network of secondary channels that convey flow only during flood events. These networks of secondary channels have only recently been revealed by high resolution digital elevation models. Secondary channels, as referred to here, span multiple meander wavelengths and appear fundamentally different from chute channels. While secondary channels have been described to some extent in other river systems, our focus here is on those found in Indiana, which are revealed by state-wide LiDAR data acquired in 2011. In this work, we quantify how the network connectivity of the secondary channels in the floodplain develops as a function of flow stage. Secondary channels begin conveying water at stages just below bankfull, become an interconnected web of flow pathways above bankfull stage, and are completely inundated at higher stages. We construct a two-dimensional numerical model of the river/floodplain system from LiDAR data and from main-channel river bathymetry in order to obtain the extent of floodplain inundation at various flows. The inundated area within the secondary channels is then converted into a river/floodplain flow-channel network and quantified using various network metrics. Future work will explore the morphodynamics of this river/floodplain system extended to 100-1,000 year timescales. The goal is to develop a simple model to test hypotheses about how these floodplain channels evolve. Relevant research questions include: do secondary channels serve as preferential avulsion pathways? Or could secondary channels evolve to create a multi-channeled anabranching system? Furthermore, under what hydrologic and sedimentologic conditions would a river/floodplain system evolve to one state or another?

Can beaver impact promote river renaturalization? The example of the Raba River, southern Poland.

PubMed

Gorczyca, Elżbieta; Krzemień, Kazimierz; Sobucki, Mateusz; Jarzyna, Krzysztof

2018-02-15

The European beaver (Castor fiber) was reintroduced in the Polish Carpathians in the 1980s after a few centuries of absence. It gradually colonized suitable habitats in the Raba River valley and elsewhere. The question arises as to whether beaver activity can play a role in the local improvement of hydromorphological conditions and spontaneous renaturalization of the Raba River channel. Field surveys were performed in morphodynamically and structurally homogeneous reaches of the river. Traces of beaver activity were identified and used to estimate the studied beaver population. Local beaver impact on the studied river channel was also determined. The Raba channel is trained along about 80% of its length and considerably incised. Traces of beavers activity were found in 16 out of 31 river reaches, mainly in the upper and lower river course. The study showed that relatively flat channel gradient, small maximum bed-material grain size, and high channel sinuosity favour beaver presence. The largest number of beaver habitats was identified in river reaches strongly altered by man and characterized by a uniform channel structure. Beaver impact on channel structure varies depending on differences of the river channel features in upper and lower reaches of the Raba River channel. In upper reaches, the impact of beaver activity (mostly dams) is reflected in increased lateral erosion, while slower water current reduces the tendency for bed degradation. In lower reaches, beaver impact is mostly limited to bank fragmentation (slides and burrows). Lateral erosion, accumulation of material at the toe of riverbanks, and wood debris accumulation all produce a local impact on river channel width. These beaver-initiated processes mostly alter artificially homogenized river reaches. Beavers may actually play a substantial role in future renaturalization of both upper and lower reaches of the Raba River. Copyright © 2017 Elsevier B.V. All rights reserved.

Note on the Effect of Horizontal Gradients for Nadir-Viewing Microwave and Infrared Sounders

NASA Technical Reports Server (NTRS)

Joiner, J.; Poli, P.

2004-01-01

Passive microwave and infrared nadir sounders such as the Advanced Microwave Sounding Unit A (AMSU-A) and the Atmospheric InfraRed Sounder (AIRS), both flying on NASA s EOS Aqua satellite, provide information about vertical temperature and humidity structure that is used in data assimilation systems for numerical weather prediction and climate applications. These instruments scan cross track so that at the satellite swath edges, the satellite zenith angles can reach approx. 60 deg. The emission path through the atmosphere as observed by the satellite is therefore slanted with respect to the satellite footprint s zenith. Although radiative transfer codes currently in use at operational centers use the appropriate satellite zenith angle to compute brightness temperature, the input atmospheric fields are those from the vertical profile above the center of the satellite footprint. If horizontal gradients are present in the atmospheric fields, the use of a vertical atmospheric profile may produce an error. This note attempts to quantify the effects of horizontal gradients on AIRS and AMSU-A channels by computing brightness temperatures with accurate slanted atmospheric profiles. We use slanted temperature, water vapor, and ozone fields from data assimilation systems. We compare the calculated slanted and vertical brightness temperatures with AIRS and AMSU-A observations. We show that the effects of horizontal gradients on these sounders are generally small and below instrument noise. However, there are cases where the effects are greater than the instrument noise and may produce erroneous increments in an assimilation system. The majority of the affected channels have weighting functions that peak in the upper troposphere (water vapor sensitive channels) and above (temperature sensitive channels) and are unlikely t o significantly impact tropospheric numerical weather prediction. However, the errors could be significant for other applications such as stratospheric analysis. Gradients in ozone and tropospheric temperature appear to be well captured by the analyses. In contrast, gradients in upper stratospheric and mesospheric temperature as well as upper tropospheric humidity are less well captured. This is likely due in part to a lack of data to specify these fields accurately in the analyses. Advanced new sounders, like AIRS, may help to better specify these fields in the future.

Particle image velocimetry study of pulsatile flow in bi-leaflet mechanical heart valves with image compensation method.

PubMed

Shi, Yubing; Yeo, Tony Joon Hock; Zhao, Yong; Hwang, Ned H C

2006-12-01

Particle Image Velocimetry (PIV) is an important technique in studying blood flow in heart valves. Previous PIV studies of flow around prosthetic heart valves had different research concentrations, and thus never provided the physical flow field pictures in a complete heart cycle, which compromised their pertinence for a better understanding of the valvular mechanism. In this study, a digital PIV (DPIV) investigation was carried out with improved accuracy, to analyse the pulsatile flow field around the bi-leaflet mechanical heart valve (MHV) in a complete heart cycle. For this purpose a pulsatile flow test rig was constructed to provide the necessary in vitro test environment, and the flow field around a St. Jude size 29 bi-leaflet MHV and a similar MHV model were studied under a simulated physiological pressure waveform with flow rate of 5.2 l/min and pulse rate at 72 beats/min. A phase-locking method was applied to gate the dynamic process of valve leaflet motions. A special image-processing program was applied to eliminate optical distortion caused by the difference in refractive indexes between the blood analogue fluid and the test section. Results clearly showed that, due to the presence of the two leaflets, the valvular flow conduit was partitioned into three flow channels. In the opening process, flow in the two side channels was first to develop under the presence of the forward pressure gradient. The flow in the central channel was developed much later at about the mid-stage of the opening process. Forward flows in all three channels were observed at the late stage of the opening process. At the early closing process, a backward flow developed first in the central channel. Under the influence of the reverse pressure gradient, the flow in the central channel first appeared to be disturbed, which was then transformed into backward flow. The backward flow in the central channel was found to be the main driving factor for the leaflet rotation in the valve closing process. After the valve was fully closed, local flow activities in the proximity of the valve region persisted for a certain time before slowly dying out. In both the valve opening and closing processes, maximum velocity always appeared near the leaflet trailing edges. The flow field features revealed in the present paper improved our understanding of valve motion mechanism under physiological conditions, and this knowledge is very helpful in designing the new generation of MHVs.

Modeling fluvial incision and transient landscape evolution: Influence of dynamic channel adjustment

NASA Astrophysics Data System (ADS)

Attal, M.; Tucker, G. E.; Whittaker, A. C.; Cowie, P. A.; Roberts, G. P.

2008-09-01

Channel geometry exerts a fundamental control on fluvial processes. Recent work has shown that bedrock channel width depends on a number of parameters, including channel slope, and is not solely a function of drainage area as is commonly assumed. The present work represents the first attempt to investigate the consequences of dynamic, gradient-sensitive channel adjustment for drainage-basin evolution. We use the Channel-Hillslope Integrated Landscape Development (CHILD) model to analyze the response of a catchment to a given tectonic perturbation, using, as a template, the topography of a well-documented catchment in the footwall of an active normal fault in the Apennines (Italy) that is known to be undergoing a transient response to tectonic forcing. We show that the observed transient response can be reproduced to first order with a simple detachment-limited fluvial incision law. Transient landscape is characterized by gentler gradients and a shorter response time when dynamic channel adjustment is allowed. The differences in predicted channel geometry between the static case (width dependent solely on upstream area) and dynamic case (width dependent on both drainage area and channel slope) lead to contrasting landscape morphologies when integrated at the scale of a whole catchment, particularly in presence of strong tilting and/or pronounced slip-rate acceleration. Our results emphasize the importance of channel width in controlling fluvial processes and landscape evolution. They stress the need for using a dynamic hydraulic scaling law when modeling landscape evolution, particularly when the relative uplift field is nonuniform.

3D printed titanium micro-bore columns containing polymer monoliths for reversed-phase liquid chromatography.

PubMed

Gupta, Vipul; Talebi, Mohammad; Deverell, Jeremy; Sandron, Sara; Nesterenko, Pavel N; Heery, Brendan; Thompson, Fletcher; Beirne, Stephen; Wallace, Gordon G; Paull, Brett

2016-03-03

The potential of 3D selective laser melting (SLM) technology to produce compact, temperature and pressure stable titanium alloy chromatographic columns is explored. A micro bore channel (0.9 mm I.D. × 600 mm long) was produced within a 5 × 30 × 30 mm titanium alloy (Ti-6Al-4V) cuboid, in form of a double handed spiral. A poly(butyl methacrylate-co-ethyleneglycoldimethacrylate) (BuMA-co-EDMA) monolithic stationary phase was thermally polymerised within the channel for application in reversed-phase high-performance liquid chromatography. The prepared monolithic column was applied to the liquid chromatographic separation of intact proteins and peptides. Peak capacities of 69-76 (for 6-8 proteins respectively) were observed during isothermal separation of proteins at 44 °C which were further increased to 73-77 using a thermal step gradient with programmed temperature from 60 °C to 35 °C using an in-house built direct-contact heater/cooler platform based upon matching sized Peltier thermoelectric modules. Rapid temperature gradients were possible due to direct-contact between the planar metal column and the Peltier module, and the high thermal conductivity of the titanium column as compared to a similar stainless steel printed column. The separation of peptides released from a digestion of E.coli was also achieved in less than 35 min with ca. 40 distinguishable peaks at 210 nm. Copyright © 2016 Elsevier B.V. All rights reserved.

Magnetic field effects on peristaltic flow of blood in a non-uniform channel

NASA Astrophysics Data System (ADS)

Latha, R.; Rushi Kumar, B.

2017-11-01

The objective of this paper is to carry out the effect of the MHD on the peristaltic transport of blood in a non-uniform channel have been explored under long wavelength approximation with low (zero) Reynolds number. Blood is made of an incompressible, viscous and electrically conducting. Explicit expressions for the axial velocity, axial pressure gradient are derived using long wavelength assumptions with slip and regularity conditions. It is determined that the pressure gradient diminishes as the couple stress parameter increments and it decreases as the magnetic parameter increments. We additionally concentrate the embedded parameters through graphs.

The Transport of Salt and Water across Isolated Rat Ileum

PubMed Central

Clarkson, T. W.

1967-01-01

The flows of sodium, potassium, and chloride under electrical and chemical gradients and of salt and water in the presence of osmotic pressure gradients are described by phenomenological equations based on the thermodynamics of irreversible processes. The aim was to give the simplest possible description, that is to postulate the least number of active transport processes and the least number of separate pathways across the intestine. On this basis, the results were consistent with the following picture of the intestine: Two channels exist across this tissue, one allowing only passive transport of ions and the other only active. In the passive channel, the predominant resistance to ion flow is friction with the water in the channel. The electroosmotic flow indicates that the passive channel is lined with negative fixed charged groups having a surface charge density of 3000 esu cm-2. The values of the ion-water frictional coefficients, and the relationship between ionic concentrations and flows indicate that the passive channel is extracellular. The active channel behaves as two membranes in series, the first membrane being semipermeable but allowing active transport of sodium, and the second membrane being similar to the passive channel. Friction with the ions in the second "membrane" is the predominant resistance to water flow. PMID:11526854

The dynamics of bedrock channel adjustment: Modeling the influence of sediment supply, weathering, and lithology on channel cross-sectional and longitudinal shape

NASA Astrophysics Data System (ADS)

Wobus, C.; Tucker, G.; Anderson, R.; Kean, J.; Small, E.; Hancock, G.

2007-12-01

The cross-sectional form of a natural river channel controls the capacity of the system to carry water off a landscape, to convey sediment derived from hillslopes, and to erode its bed and banks. Numerical models that describe the response of a landscape to changes in climate or tectonics therefore require formulations that can accommodate changes in channel cross-sectional geometry through time. We have developed a 2D numerical model that computes the formation of a channel in a cohesive, detachment-limited substrate subject to steady, unidirectional flow. Boundary shear stress is calculated using a simple approximation of the flow field in which log-velocity profiles are assumed to apply along vectors that are perpendicular to the local boundary surface. The resulting model predictions for the velocity structure, peak boundary shear stress, and equilibrium channel shape compare well with the predictions of a more sophisticated but more computationally demanding ray-isovel model. For example, the mean velocities computed by the two models are consistent to within ~3%, and the predicted peak shear stress is consistent to within ~7%. The efficiency of our model makes it suitable for calculations of long-term morphologic change both in single cross-sections and in series of cross-sections arrayed downstream. For a uniform substrate, the model predicts a strong tendency toward a fixed width-to-depth ratio, regardless of gradient or discharge. The model predicts power-law relationships between width and discharge with an exponent near 2/5, and between width and gradient with an exponent near -1/5. Recent enhancements to the model include the addition of sediment, which increases the width-to-depth ratio at steady state by favoring erosion of the channel walls relative to the channel bed (the "cover effect"). Inclusion of a probability density function of discharges with a simple parameterization of weathering along channel banks leads to the formation of model strath terraces. Downstream changes in substrate erodibility or tectonic uplift rate lead to step-function changes in channel width, consistent with empirical observations. Finally, explicit inclusion of bedload transport allows channel width, gradient, and the pattern of sediment flux to evolve dynamically, allowing us to explore the response of bedrock channels to both spatial patterns of rock uplift, and temporal variations in sediment input.

Temperature-profile methods for estimating percolation rates in arid environments

USGS Publications Warehouse

Constantz, Jim; Tyler, Scott W.; Kwicklis, Edward

2003-01-01

Percolation rates are estimated using vertical temperature profiles from sequentially deeper vadose environments, progressing from sediments beneath stream channels, to expansive basin-fill materials, and finally to deep fractured bedrock underlying mountainous terrain. Beneath stream channels, vertical temperature profiles vary over time in response to downward heat transport, which is generally controlled by conductive heat transport during dry periods, or by advective transport during channel infiltration. During periods of stream-channel infiltration, two relatively simple approaches are possible: a heat-pulse technique, or a heat and liquid-water transport simulation code. Focused percolation rates beneath stream channels are examined for perennial, seasonal, and ephemeral channels in central New Mexico, with estimated percolation rates ranging from 100 to 2100 mm d−1 Deep within basin-fill and underlying mountainous terrain, vertical temperature gradients are dominated by the local geothermal gradient, which creates a profile with decreasing temperatures toward the surface. If simplifying assumptions are employed regarding stratigraphy and vapor fluxes, an analytical solution to the heat transport problem can be used to generate temperature profiles at specified percolation rates for comparison to the observed geothermal gradient. Comparisons to an observed temperature profile in the basin-fill sediments beneath Frenchman Flat, Nevada, yielded water fluxes near zero, with absolute values <10 mm yr−1 For the deep vadose environment beneath Yucca Mountain, Nevada, the complexities of stratigraphy and vapor movement are incorporated into a more elaborate heat and water transport model to compare simulated and observed temperature profiles for a pair of deep boreholes. Best matches resulted in a percolation rate near zero for one borehole and 11 mm yr−1 for the second borehole.

Morphologic evolution of the Central Andes of Peru

NASA Astrophysics Data System (ADS)

Gonzalez, Laura; Pfiffner, O. Adrian

2012-01-01

In this paper, we analyze the morphology of the Andes of Peru and its evolution based on the geometry of river channels, their bedrock profiles, stream gradient indices and the relation between thrust faults and morphology. The rivers of the Pacific Basin incised Mesozoic sediments of the Marañon thrust belt, Cenozoic volcanics and the granitic rocks of the Coastal Batholith. They are mainly bedrock channels with convex upward shapes and show signs of active ongoing incision. The changes in lithology do not correlate with breaks in slope of the channels (or knick points) such that the high gradient indices (K) with values between 2,000-3,000 and higher than 3,000 suggest that incision is controlled by tectonic activity. Our analysis reveals that many of the ranges of the Western Cordillera were uplifted to the actual elevations where peaks reach to 6,000 m above sea level by thrusting along steeply dipping faults. We correlate this uplift with the Quechua Phase of Neogene age documented for the Subandean thrust belt. The rivers of the Amazonas Basin have steep slopes and high gradient indices of 2,000-3,000 and locally more than 3,000 in those segments where the rivers flow over the crystalline basement of the Eastern Cordillera affected by vertical faulting. Gradient indices decrease to 1,000-2,000 within the east-vergent thrust belt of the Subandean Zone. Here a correlation between breaks in river channel slopes and location of thrust faults can be established, suggesting that the young, Quechua Phase thrust faults of the Subandean thrust belt, which involve Neogene sediments, influenced the channel geometry. In the eastern lowlands, these rivers become meandering and flow parallel to anticlines that formed in the hanging wall of Quechua Phase thrust faults, suggesting that the river courses were actively displaced outward into the foreland.

Sedimentary processes of the lower Monterey Fan channel and channel-mouth lobe

USGS Publications Warehouse

Klaucke, I.; Masson, D.G.; Kenyon, Neil H.; Gardner, J.V.

2004-01-01

The distribution of deposits, sediment transport pathways and processes on the lower Monterey Fan channel and channel-mouth lobe (CML) are studied through the integration of GLORIA and TOBI sidescan sonar data with 7-kHz subbottom profiler records and sediment cores for ground-truthing. The lower Monterey channel is characterised by an up to 30-m-deep channel with poorly developed levees and alternating muddy and silty muddy overbank deposits. The channel is discontinuous, disappearing where gradients are less than about 1:350. Ground-truthing of the large CML shows that the entire CML is characterised by widespread deposits of generally fine sand, with coarser sand at the base of turbidites. Sand is particularly concentrated in finger-like areas of low-backscatter intensity and is interpreted as the result of non-turbulent sediment-gravity flows depositing metres thick massive, fine sand. TOBI sidescan sonar data reveal recent erosional features in the form of scours, secondary channels, large flow slides, and trains of blocks at the distal end of the CML. Erosion is probably related to increasing gradient as the CML approaches Murray Fracture zone and to differential loading of sandy submarine fan deposits onto pelagic clays. Reworking of older flow slides by sediment transport processes on the lobe produces trains of blocks that are several metres in diameter and aligned parallel to the flow direction. ?? 2004 Elsevier B.V. All rights reserved.

Fluvial signatures of modern and paleo orographic rainfall gradients

NASA Astrophysics Data System (ADS)

Schildgen, Taylor; Strecker, Manfred

2016-04-01

The morphology of river profiles is intimately linked to both climate and tectonic forcing. While much interest recently has focused on how river profiles can be inverted to derive uplift histories, here we show how in regions of strong orographic rainfall gradients, rivers may primarily record spatial patterns of precipitation. As a case study, we examine the eastern margin of the Andean plateau in NW Argentina, where the outward (eastward) growth of a broken foreland has led to a eastward shift in the main orographic rainfall gradient over the last several million years. Rivers influenced by the modern rainfall gradient are characterized by normalized river steepness values in tributary valleys that closely track spatial variations in rainfall, with higher steepness values in drier areas and lower steepness values in wetter areas. The same river steepness pattern has been predicted in landscape evolution models that apply a spatial gradient in rainfall to a region of uniform erosivity and uplift rate (e.g., Han et al., 2015). Also, chi plots from river networks on individual ranges affected by the modern orographic rainfall reveal patterns consistent with assymmetric precipitation across the range: the largest channels on the windward slopes are characterized by capture, while the longest channels on the leeward slopes are dominated by beheadings. Because basins on the windward side both lengthen and widen, tributary channels in the lengthening basins are characterized by capture, while tributary channels from neighboring basins on the windward side are dominated by beheadings. These patterns from the rivers influenced by the modern orographic rainfall gradient provide a guide for identifying river morphometric signatures of paleo orographic rainfall gradients. Mountain ranges to the west of the modern orographic rainfall have been interpreted to mark the location of orographic rainfall in the past, but these ranges are now in spatially near-uniform semi-arid to arid precipitation regimes. Indeed, despite uniform lithology and uplift history, we see patterns in river steepness values and in chi plots that are consistest a rainfall gradient on the (former) windward side of the range and asymmetric precipitation across the range. We suggest that morphological aspects of the river networks in such regions are dominated by their history of changing climate. These morphologic signatures appear to persist for millions of years in NW Argentina, most likely because the transition from a wetter to a drier climate has prevented a rapid readjustment to new forcing conditions. Reference: Han, J., Gasparini, N.M., and Johnson, J.P., 2015, Measuring the imprint of orographic rainfall gradients on the morphology of steady-state numerical fluvial landscapes. Earth Surf. Process. Landforms, 40(10), 1334-1350.

Tip-localized Ca2+ -permeable channels control pollen tube growth via kinase-dependent R- and S-type anion channel regulation.

PubMed

Gutermuth, Timo; Herbell, Sarah; Lassig, Roman; Brosché, Mikael; Romeis, Tina; Feijó, José Alberto; Hedrich, Rainer; Konrad, Kai Robert

2018-05-01

Pollen tubes (PTs) are characterized by having tip-focused cytosolic calcium ion (Ca 2+ ) concentration ([Ca 2+ ] cyt ) gradients, which are believed to control PT growth. However, the mechanisms by which the apical [Ca 2+ ] cyt orchestrates PT growth are not well understood. Here, we aimed to identify these mechanisms by combining reverse genetics, cell biology, electrophysiology, and live-cell Ca 2+ and anion imaging. We triggered Ca 2+ -channel activation by applying hyperpolarizing voltage pulses and observed that the evoked [Ca 2+ ] cyt increases were paralleled by high anion channel activity and a decrease in the cytosolic anion concentration at the PT tip. We confirmed a functional correlation between these patterns by showing that inhibition of Ca 2+ -permeable channels eliminated the [Ca 2+ ] cyt increase, resulting in the abrogation of anion channel activity via Ca 2+ -dependent protein kinases (CPKs). Functional characterization of CPK and anion-channel mutants revealed a CPK2/20/6-dependent activation of SLAH3 and ALMT12/13/14 anion channels. The impaired growth phenotypes of anion channel and CPK mutants support the physiological significance of a kinase- and Ca 2+ -dependent pathway to control PT growth via anion channel activation. Other than unveiling this functional link, our membrane hyperpolarization method allows for unprecedented manipulation of the [Ca 2+ ] cyt gradient or oscillations in the PT tips and opens an array of opportunities for channel screenings. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

Field migration rates of tidal meanders recapitulate fluvial morphodynamics

NASA Astrophysics Data System (ADS)

Finotello, Alvise; Lanzoni, Stefano; Ghinassi, Massimiliano; Marani, Marco; Rinaldo, Andrea; D'Alpaos, Andrea

2018-02-01

The majority of tidal channels display marked meandering features. Despite their importance in oil-reservoir formation and tidal landscape morphology, questions remain on whether tidal-meander dynamics could be understood in terms of fluvial processes and theory. Key differences suggest otherwise, like the periodic reversal of landscape-forming tidal flows and the widely accepted empirical notion that tidal meanders are stable landscape features, in stark contrast with their migrating fluvial counterparts. On the contrary, here we show that, once properly normalized, observed migration rates of tidal and fluvial meanders are remarkably similar. Key to normalization is the role of tidal channel width that responds to the strong spatial gradients of landscape-forming flow rates and tidal prisms. We find that migration dynamics of tidal meanders agree with nonlinear theories for river meander evolution. Our results challenge the conventional view of tidal channels as stable landscape features and suggest that meandering tidal channels recapitulate many fluvial counterparts owing to large gradients of tidal prisms across meander wavelengths.

Relationship among side channels, fish assemblages, and environmental gradients in the unimpounded Upper Mississippi River

USGS Publications Warehouse

Barko, V.A.; Herzog, D.P.

2003-01-01

We analyzed fish abundance and environmental data collected over nine years from six side channels of the unimpounded upper Mississippi River between river km 46.7 and 128.7. A partial canonical correspondence analysis revealed differences in fish assemblages and environmental factors correlated with the six side channels. Fishes correlated with open side channels represented large river species tolerant of current and/or turbidity. Fishes correlated with closed side channels represented assemblages preferring either moderate to low turbidity/current or pools.

Spatial gradients in stream power and the implications for lateral and downstream transport of material during the 2013 Floods in Colorado and 2011 Irene Floods in Vermont, USA

NASA Astrophysics Data System (ADS)

Gartner, J. D.; Renshaw, C. E.; Magilligan, F. J.; Buraas, E. M.; Dethier, E.; Dade, W. B.

2014-12-01

Classic approaches to understand sediment transport and channel-hillslope coupling focus on magnitudes of forces at a point location or reach. Yet often overlooked are downstream gradients in forces along a river. Here we show a physical rationale supported by field evidence that downstream spatial gradients in sediment transport capacity affect lateral exchange of material in the form of landslides, bank failures and floodplain deposition. Taking advantage of the strong signals of near-channel deposition and erosion during the record-high 2011 Irene floods in Vermont and 2013 floods in Colorado, USA, we test if these spatial gradients can predict geomorphic response in flood events. Total stream power, an indicator of total sediment transport capacity, was mapped using GIS analysis along the Saxtons River (190 km2) and West Branch of White River (112 km2) in Vermont and Fourmile Creek (20 km2) and an unnamed creek on Mt Sanitas (7 km2) in Boulder, CO. These mountainous streams exhibit reach slopes of 0.5 to > 10%, with less steep reaches interspersed among steeper reaches. Near-channel erosion and deposition were quantified along 52 river km by pre/post satellite imagery, field surveys, and, when available, differencing of pre/post topography measured by aerial LiDAR. Zones of abundant mass wasting inputs—up to 11,000 m3 per km—were generally distinct from zones of abundant floodplain deposition—up to 30,000 m3 per km. Spatial patterns indicate that zones of abundant mass wasting into the channels align approximately with zones of down-flow increasing stream power. These reaches can convey material delivered from upstream plus additional lateral inputs of sediment. Conversely, reaches of abundant lateral flux out of the channel via near-channel deposition occur predominantly where mapped total stream power declines in the down-flow direction. These reaches appear unable to convey material supplied from upstream, which induces lateral deposition. The demonstrated interaction between downstream and lateral fluxes of material provides insight on physical controls on broad-scale geomorphic processes at channel margins as well as the sources and fates of matter transported by rivers, with implications for flood recovery and long-term river management.

High Resolution Mapping and Interpretation of Channel and Floodplain Topography With a Narrow-Beam Terrestrial-Aquatic Lidar

NASA Astrophysics Data System (ADS)

McKean, J.; Isaak, D.; Tonina, D.; Wright, W.; Kinzel, P.

2007-12-01

Basic description of channel and floodplain topography remains a fundamental challenge for modeling flow and sediment transport or even simply mapping habitat. Standard field wading and boat surveys of stream topography are limited by costs and logistics to relatively small sample reaches and floodplain maps are seldom well- integrated with channel bathymetry. We used the NASA Experimental Advanced Airborne Research Lidar (EAARL) to map channel and floodplain topography and investigate geomorphic controls on physical habitat in two diverse channels in the watershed of the Middle Fork Salmon River, Idaho. Bear Valley Creek is a small low-gradient gravel-bed stream flowing across an unconfined valley filled with glacial outwash materials. A hierarchy of nested geomorphic features is evident in this channel with the broadest fluvial domains a legacy of ~15,000 years of post-glacial valley evolution. Contemporary hydraulics operate on this broad template and control two smaller scales of pool-riffle morphology. Salmon spawning patterns closely reflect these nested physical domains, demonstrating how geomorphic history can influence modern distributions of aquatic habitat and organisms. In contrast, Big Creek is a higher-gradient stream predominately confined by steep side slopes in a deep valley. Here, the distribution of geomorphic domains and physical habitat is controlled by modern erosion processes and rock quality. Tributaries and valley walls contribute coarse debris, up to large boulders, to the channel, resulting in very rough and poorly organized bed topography. Tributary fans also function as local grade control with sediment deposition in lower-gradient reaches upstream of fans. A GIS toolkit is under development to extract at-a-station channel metrics from EAARL data, including for example, cross section and longitudinal profile characteristics. A new investigation has also begun to further investigate the quality of EAARL data. This study will explore the question of how well we must describe channel topography to adequately: i) map the spatial distribution of physical habitat for management purposes and in support of organism population growth models, and ii) define boundary conditions for flow and sediment transport predictions using the USGS model MD SWMS.

Tidally-driven Surface Flow in a Georgia Estuarine Saltmarsh

NASA Astrophysics Data System (ADS)

Young, D.; Bruder, B. L.; Haas, K. A.; Webster, D. R.

2016-02-01

Estuarine saltmarshes are diverse, valuable, and productive ecosystems. Vegetation dampens wave and current energy, thereby allowing the estuaries to serve as a nursery habitat for shellfish and fish species. Tidally-driven flow transports nutrients into and out of the estuary, nourishing inshore and offshore vegetation and animals. The effects of vegetation on the marsh hydrodynamics and on the estuary creek and channel flow are, unfortunately, poorly understood, and the knowledge that does exist primarily originates from modeling studies. Field studies addressing marsh surface flows are limited due to the difficulty of accurately measuring the water surface elevation and acquiring concurrent velocity measurements in the dense marsh vegetation. This study partially bridges the gap between the model observations of marsh flow driven by water surface elevation gradients and flume studies of flow through vegetation. Three current meters and three pressure transducers were deployed for three days along a transect perpendicular to the main channel (Little Ogeechee River) in a saltmarsh adjacent to Rose Dhu Island (Savannah, Georgia, USA). The pressure transducer locations were surveyed daily with static GPS yielding highly accurate water surface elevation data. During flood and ebb tide, water surface elevation differences between the marsh and Little Ogeechee River were observed up to 15 cm and pressure gradients were observed up to 0.0017 m of water surface elevation drop per m of linear distance. The resulting channel-to-saltmarsh pressure gradients substantially affected tidal currents at all current meters. At one current meter, the velocity was nearly perpendicular to the Little Ogeechee River bank. The velocity at this location was effectively modeled as a balance between the pressure gradient and marsh vegetation-induced drag force using the Darcy-Weisbach/Lindner's equations developed for flow-through-vegetation analysis in open channel flow.

Bacterial finite-size effects for population expansion under flow

NASA Astrophysics Data System (ADS)

Toschi, Federico; Tesser, Francesca; Zeegers, Jos C. H.; Clercx, Herman J. H.; Brunsveld, Luc

2016-11-01

For organisms living in a liquid ecosystem, flow and flow gradients have a dual role as they transport nutrient while, at the same time, dispersing the individuals. In absence of flow and under homogeneous conditions, the growth of a population towards an empty region is usually described by a reaction-diffusion equation. The effect of fluid flow is not yet well understood and the interplay between transport of individuals and growth opens a wide scenario of possible behaviors. In this work, we study experimentally the dynamics of non-motile E. coli bacteria colonies spreading inside rectangular channels, in PDMS microfluidic devices. By use of a fluorescent microscope we analyze the dynamics of the population density subjected to different co- and counter-flow conditions and shear rates. A simple model incorporating growth, dispersion and drift of finite size beads is able to explain the experimental findings. This indicates that models based on the Fisher-Kolmogorov-Petrovsky-Piscounov equation (FKPP) may have to be supplemented with bacterial finite-size effects in order to be able to accurately reproduce experimental results for population spatial growth.

Seasonal body size reductions with warming covary with major body size gradients in arthropod species.

PubMed

Horne, Curtis R; Hirst, Andrew G; Atkinson, David

2017-03-29

Major biological and biogeographical rules link body size variation with latitude or environmental temperature, and these rules are often studied in isolation. Within multivoltine species, seasonal temperature variation can cause substantial changes in adult body size, as subsequent generations experience different developmental conditions. Yet, unlike other size patterns, these common seasonal temperature-size gradients have never been collectively analysed. We undertake the largest analysis to date of seasonal temperature-size gradients in multivoltine arthropods, including 102 aquatic and terrestrial species from 71 global locations. Adult size declines in warmer seasons in 86% of the species examined. Aquatic species show approximately 2.5-fold greater reduction in size per °C of warming than terrestrial species, supporting the hypothesis that greater oxygen limitation in water than in air forces aquatic species to exhibit greater plasticity in body size with temperature. Total percentage change in size over the annual cycle appears relatively constant with annual temperature range but varies between environments, such that the overall size reduction in aquatic-developing species (approx. 31%) is almost threefold greater than in terrestrial species (approx. 11%). For the first time, we show that strong correlations exist between seasonal temperature-size gradients, laboratory responses and latitudinal-size clines, suggesting that these patterns share common drivers. © 2017 The Author(s).

Effect of a surface tension gradient on the slip flow along a superhydrophobic air-water interface

NASA Astrophysics Data System (ADS)

Song, Dong; Song, Baowei; Hu, Haibao; Du, Xiaosong; Du, Peng; Choi, Chang-Hwan; Rothstein, Jonathan P.

2018-03-01

Superhydrophobic surfaces have been shown to produce significant drag reduction in both laminar and turbulent flows by introducing an apparent slip velocity along an air-water interface trapped within the surface roughness. In the experiments presented within this study, we demonstrate the existence of a surface tension gradient associated with the resultant Marangoni flow along an air-water interface that causes the slip velocity and slip length to be significantly reduced. In this study, the slip velocity along a millimeter-sized air-water interface was investigated experimentally. This large-scale air-water interface facilitated a detailed investigation of the interfacial velocity profiles as the flow rate, interfacial curvature, and interface geometry were varied. For the air-water interfaces supported above continuous grooves (concentric rings within a torsional shear flow) where no surface tension gradient exists, a slip velocity as high as 30% of the bulk velocity was observed. However, for the air-water interfaces supported above discontinuous grooves (rectangular channels in a Poiseuille flow), the presence of a surface tension gradient reduced the slip velocity and in some cases resulted in an interfacial velocity that was opposite to the main flow direction. The curvature of the air-water interface in the spanwise direction was found to dictate the details of the interfacial flow profile with reverse flow in the center of the interface for concave surfaces and along the outside of the interface for convex surfaces. The deflection of the air-water interface was also found to greatly affect the magnitude of the slip. Numerical simulations imposed with a relatively small surface tension gradient along the air-water interface were able to predict both the reduced slip velocity and back flow along the air-water interface.

In-channel Restoration Structures and the Implications on Hyporheic Exchange: a Laboratory Experiment

NASA Astrophysics Data System (ADS)

Han, B.; Chu, H. H.; Endreny, T. A.

2014-12-01

In-channel structures, i.e. cross-vanes and J-hooks, are commonly installed in river restoration projects to modify the streambed morphology and stream water surface profile, and are known to change hyporhiec exchange flux and habitats for riverine animals. However, few studies have continuous and accurate pre- and post-treatment data to evaluate the impact of these structures on channel hydraulic gradients and morphology. To quantify the effects of in-channel structures, we developed a scaled physical model of a meandering stream with a cross-vane and 6 J-hooks on a mobile-bed river table. Close-range photogrammetry technique was applied to obtain 3-D water and ground surface profiles with sub-millimeter vertical accuracy and horizontal resolution. The experiment was compared with a control experiment without structures while maintaining the same initial conditions of river bed, floodplain and stream flow. Results indicated that the cross-vane caused an average local head loss that represented 16% of the total stream reach head loss, and a 74% increase in channel load in the entire stream reach. Most J-hooks can create stepwise patterns in stream longitudinal profile, and cross-vane can create even more significant ones. Hydraulic gradients across the intra-meander zone also increased with in-channel structures, i.e. from 2.5% to 3.5% at the meander neck. Scour pools developed downstream of the cross-vane, and mostly around the 4 meander apex J-hooks at their hooked tip. Backwater caused by the cross-vane steepened the local water table profile by an additional 4.2%, and was the primary driver of statistically significant hydraulic gradient increase. Reach scale water and streambed surface profiles from our study provided detailed data to improve the understanding of in-channel structure effects, and may serve as reliable data source in computational modeling of hyporheic exchange.

Determination of boundaries between ranges of high and low gradient of beam profile.

PubMed

Wendykier, Jacek; Bieniasiewicz, Marcin; Grządziel, Aleksandra; Jedynak, Tadeusz; Kośniewski, Wiktor; Reudelsdorf, Marta; Wendykier, Piotr

2016-01-01

This work addresses the problem of treatment planning system commissioning by introducing a new method of determination of boundaries between high and low gradient in beam profile. The commissioning of a treatment planning system is a very important task in the radiation therapy. One of the main goals of this task is to compare two field profiles: measured and calculated. Applying points of 80% and 120% of nominal field size can lead to the incorrect determination of boundaries, especially for small field sizes. The method that is based on the beam profile gradient allows for proper assignment of boundaries between high and low gradient regions even for small fields. TRS 430 recommendations for commissioning were used. The described method allows a separation between high and low gradient, because it directly uses the value of the gradient of a profile. For small fields, the boundaries determined by the new method allow a commissioning of a treatment planning system according to the TRS 430, while the point of 80% of nominal field size is already in the high gradient region. The method of determining the boundaries by using the beam profile gradient can be extremely helpful during the commissioning of the treatment planning system for Intensity Modulated Radiation Therapy or for other techniques which require very small field sizes.

The ABC protein turned chloride channel whose failure causes cystic fibrosis

NASA Astrophysics Data System (ADS)

Gadsby, David C.; Vergani, Paola; Csanády, László

2006-03-01

CFTR chloride channels are encoded by the gene mutated in patients with cystic fibrosis. These channels belong to the superfamily of ABC transporter ATPases. ATP-driven conformational changes, which in other ABC proteins fuel uphill substrate transport across cellular membranes, in CFTR open and close a gate to allow transmembrane flow of anions down their electrochemical gradient. New structural and biochemical information from prokaryotic ABC proteins and functional information from CFTR channels has led to a unifying mechanism explaining those ATP-driven conformational changes.

Increases in intracellular pH facilitate endocytosis and decrease availability of voltage-gated proton channels in osteoclasts and microglia

PubMed Central

Sakai, Hiromu; Li, Guangshuai; Hino, Yoshiko; Moriura, Yoshie; Kawawaki, Junko; Sawada, Makoto; Kuno, Miyuki

2013-01-01

Voltage-gated proton channels (H+ channels) are highly proton-selective transmembrane pathways. Although the primary determinants for activation are the pH and voltage gradients across the membrane, the current amplitudes fluctuate often when these gradients are constant. The aim of this study was to investigate the role of the intracellular pH (pHi) in regulating the availability of H+ channels in osteoclasts and microglia. In whole-cell clamp recordings, the pHi was elevated after exposure to NH4Cl and returned to the control level after washout. However, the H+ channel conductance did not recover fully when the exposure was prolonged (>5 min). Similar results were observed in osteoclasts and microglia, but not in COS7 cells expressing a murine H+ channel gene (mVSOP). As other electrophysiological properties, like the gating kinetics and voltage dependence for activation, were unchanged, the decreases in the H+ channel conductance were probably due to the decreases in H+ channels available at the plasma membrane. The decreases in the H+ channel conductances were accompanied by reductions in the cell capacitance. Exposure to NH4Cl increased the uptake of the endocytosis marker FM1-43, substantiating the idea that pHi increases facilitated endocytosis. In osteoclasts, whose plasma membrane expresses V-ATPases and H+ channels, pHi increases by these H+-transferring molecules in part facilitated endocytosis. The endocytosis and decreases in the H+ channel conductance were reduced by dynasore, a dynamin blocker. These results suggest that pHi increases in osteoclasts and microglia decrease the numbers of H+ channels available at the plasma membrane through facilitation of dynamin-dependent endocytosis. PMID:24081153

The role of upper-regime flow bedforms in the morphodynamics of submarine channels

NASA Astrophysics Data System (ADS)

Covault, Jacob A.; Kostic, Svetlana; Fildani, Andrea

2014-05-01

Advances in acoustic imaging of submarine canyons and channels have provided accurate renderings of seafloor geomorphology. Still, a fundamental understanding of channel inception, evolution, sediment transport, and the nature of the currents traversing these channels remains elusive. Here, we review a mosaic of geomorphology, shallow stratigraphy, and morphodynamics of channelized deep-water depositional systems of tectonically active slopes offshore of California, USA. These systems are imaged in high-resolution multi-beam sonar bathymetry (dominant frequency ~200 kHz) and seismic-reflection (2-16 kHz) data. From north to south, the Monterey East, Lucia Chica, and San Mateo channelized deep-water depositional systems show a breadth of geomorphology and stratigraphic architecture, including channel reaches of varying sinuosity, levees, terraces within channels, and crescent-shaped bedforms, especially in the thalwegs of incipient channel elements. Morphodynamic numerical modeling is combined with interpretations of seafloor and shallow subsurface stratigraphic imagery to demonstrate that the crescent-shaped bedforms common to channel thalwegs are likely to be cyclic steps. We propose that net-erosional and net-depositional cyclic steps play a fundamental role in the formation, filling, and maintenance phases of submarine channels in continental margins with high gradient, locally rugose bathymetry. These margins include passive-margin slopes subjected to gravity-driven tectonic deformation. In such settings, high gradients support the development of densimetric Froude-supercritical turbidity currents, and abrupt slope breaks can promote hydraulic jumps and the spontaneous evolution of an erodible seabed into cyclic steps. This morphodynamic investigation of turbidity currents and the seafloor has the potential to enhance prediction of the locations, stratigraphic evolution, and architecture of submarine canyon-channel systems.

Ecoregions and stream morphology in eastern Oklahoma

USGS Publications Warehouse

Splinter, D.K.; Dauwalter, D.C.; Marston, R.A.; Fisher, W.L.

2010-01-01

Broad-scale variables (i.e., geology, topography, climate, land use, vegetation, and soils) influence channel morphology. How and to what extent the longitudinal pattern of channel morphology is influenced by broad-scale variables is important to fluvial geomorphologists and stream ecologists. In the last couple of decades, there has been an increase in the amount of interdisciplinary research between fluvial geomorphologists and stream ecologists. In a historical context, fluvial geomorphologists are more apt to use physiographic regions to distinguish broad-scale variables, while stream ecologists are more apt to use the concept of an ecosystem to address the broad-scale variables that influence stream habitat. For this reason, we designed a study using ecoregions, which uses physical and biological variables to understand how landscapes influence channel processes. Ecoregions are delineated by similarities in geology, climate, soils, land use, and potential natural vegetation. In the fluvial system, stream form and function are dictated by processes observed throughout the fluvial hierarchy. Recognizing that stream form and function should differ by ecoregion, a study was designed to evaluate how the characteristics of stream channels differed longitudinally among three ecoregions in eastern Oklahoma, USA: Boston Mountains, Ozark Highlands, and Ouachita Mountains. Channel morphology of 149 stream reaches was surveyed in 1st- through 4th-order streams, and effects of drainage area and ecoregion on channel morphology was evaluated using multiple regressions. Differences existed (?????0.05) among ecoregions for particle size, bankfull width, and width/depth ratio. No differences existed among ecoregions for gradient or sinuosity. Particle size was smallest in the Ozark Highlands and largest in the Ouachita Mountains. Bankfull width was larger in the Ozark Highlands than in the Boston Mountains and Ouachita Mountains in larger streams. Width/depth ratios of the Boston Mountains and Ozark Highlands were not statistically different. Significant differences existed, however, between the Boston Mountains and Ozark Highlands when compared individually to the Ouachita Mountains. We found that ecoregions afforded a good spatial structure that can help in understanding longitudinal trends in stream reach morphology surveyed at the reach scale. The hierarchy of the fluvial system begins within a broad, relatively homogenous setting that imparts control on processes that affect stream function. Ecoregions provide an adequate regional division to begin a large-scale geomorphic study of processes in stream channels. ?? 2010 Elsevier B.V.

Magnetic navigation of an untethered micro device using four stationary coils.

PubMed

Ha, Yong H; Choi, Kyung M; Han, Byung H; Cho, Min H; Lee, Soo Y

2009-01-01

We introduce a magnetic navigation of a small magnet using four stationary coils. We used a Maxwell gradient coil to get magnetic propulsion force and three Helmholtz coils to control the moving direction of the magnet in the magnetic navigation. Using a three-channel coil driver with output capacity of 320A, we performed magnetic navigation of a small NdFeB magnet with the size of 10 mm x 10 mm x 12 mm on a horizontal plane. When navigated with a slow speed of about 1 mm/s, the magnet kept track of any arbitrary navigational path. We expect the proposed magnetic navigation method can be easily incorporated into the system for human applications since it does not use any moving coils.

Large wood budget and transport dynamics on a large river using radio telemetry

USGS Publications Warehouse

Schenk, Edward R.; Moulin, Bertrand; Hupp, Cliff R.; Richte, Jean M.

2014-01-01

Despite the abundance of large wood (LW) river studies there is still a lack of understanding of LW transport dynamics on large low gradient rivers. This study used 290 radio frequency identification tagged (RFID) LW and 54 metal (aluminum) tagged LW, to quantify the percent of in-channel LW that moves per year and what variables play a role in LW transport dynamics. Aluminum tags were installed and monitored on LW in-transit during the rising limb of a flood, the mean distance traveled by those pieces during the week was 13.3 river kilometers (km) with a maximum distance of 72 km. RFID tagged LW moved a mean of 11.9 km/yr with a maximum observed at 101.1 km/yr. Approximately 41% of LW low on the bank moves per year. The high rate of transport and distance traveled is likely due to the lack of interaction between LW floating in the channel and the channel boundaries, caused primarily by the width of the channel relative to length of the LW. Approximately 80% of the RFID tags moved past a fixed reader during the highest 20% of river stage per year. LW transport and logjam dynamics are complicated at high flows as pieces form temporary jams that continually expand and contract. Unlike most other studies, key members that create a logjam were defined more by stability than jam size or channel/hydrologic conditions. Finally, using an existing geomorphic database for the river, and data from this study, we were able to develop a comprehensive LW budget showing that 5% of the in-channel LW population turns over each year (input from mass wasting and fluvial erosion equals burial, decomposition, and export out of system) and another 16% of the population moving within the system.

Paleohydraulics and hydrodynamics of Scabland floods

NASA Technical Reports Server (NTRS)

Baker, V. R.

1978-01-01

The last major episode of scabland flooding (approx. 18,000-13,000 years B.P.) left considerable high-water mark evidence in the form of: (1) eroded channel margins; (2) depositional features; (3) ice-rafter erratics; and (4) divide crossings. These were used to reconstruct maximum flood stages and water-surface gradients. Engineering hydraulic calculation procedures allowed the analyses of flood discharges and mean velocities from these data. Secondary flow phenomena, including various forms of vortices and flow separations, are considered to have been the principal erosive processes. The intense pressure and velocity gradients of vortices along the irregular channel boundaries produced the plucking-type erosion.

Heat and mass transfer analogy for condensation of humid air in a vertical channel

NASA Astrophysics Data System (ADS)

Desrayaud, G.; Lauriat, G.

This study examines energy transport associated with liquid film condensation in natural convection flows driven by differences in density due to temperature and concentration gradients. The condensation problem is based on the thin-film assumptions. The most common compositional gradient, which is encountered in humid air at ambient temperature is considered. A steady laminar Boussinesq flow of an ideal gas-vapor mixture is studied for the case of a vertical parallel plate channel. New correlations for the latent and sensible Nusselt numbers are established, and the heat and mass transfer analogy between the sensible Nusselt number and Sherwood number is demonstrated.

Orbital Angular Momentum-based Space Division Multiplexing for High-capacity Underwater Optical Communications

DOE PAGES

Ren, Yongxiong; Li, Long; Wang, Zhe; ...

2016-09-12

To increase system capacity of underwater optical communications, we employ the spatial domain to simultaneously transmit multiple orthogonal spatial beams, each carrying an independent data channel. In this paper, we show up to a 40-Gbit/s link by multiplexing and transmitting four green orbital angular momentum (OAM) beams through a single aperture. Moreover, we investigate the degrading effects of scattering/turbidity, water current, and thermal gradient-induced turbulence, and we find that thermal gradients cause the most distortions and turbidity causes the most loss. We show systems results using two different data generation techniques, one at 1064 nm for 10-Gbit/s/beam and one atmore » 520 nm for 1-Gbit/s/beam; we use both techniques since present data-modulation technologies are faster for infrared (IR) than for green. For the 40-Gbit/s link, data is modulated in the IR, and OAM imprinting is performed in the green using a specially-designed metasurface phase mask. For the 4-Gbit/s link, a green laser diode is directly modulated. Lastly, we show that inter-channel crosstalk induced by thermal gradients can be mitigated using multi-channel equalisation processing.« less

Orbital Angular Momentum-based Space Division Multiplexing for High-capacity Underwater Optical Communications

PubMed Central

Ren, Yongxiong; Li, Long; Wang, Zhe; Kamali, Seyedeh Mahsa; Arbabi, Ehsan; Arbabi, Amir; Zhao, Zhe; Xie, Guodong; Cao, Yinwen; Ahmed, Nisar; Yan, Yan; Liu, Cong; Willner, Asher J.; Ashrafi, Solyman; Tur, Moshe; Faraon, Andrei; Willner, Alan E.

2016-01-01

To increase system capacity of underwater optical communications, we employ the spatial domain to simultaneously transmit multiple orthogonal spatial beams, each carrying an independent data channel. In this paper, we show up to a 40-Gbit/s link by multiplexing and transmitting four green orbital angular momentum (OAM) beams through a single aperture. Moreover, we investigate the degrading effects of scattering/turbidity, water current, and thermal gradient-induced turbulence, and we find that thermal gradients cause the most distortions and turbidity causes the most loss. We show systems results using two different data generation techniques, one at 1064 nm for 10-Gbit/s/beam and one at 520 nm for 1-Gbit/s/beam; we use both techniques since present data-modulation technologies are faster for infrared (IR) than for green. For the 40-Gbit/s link, data is modulated in the IR, and OAM imprinting is performed in the green using a specially-designed metasurface phase mask. For the 4-Gbit/s link, a green laser diode is directly modulated. Finally, we show that inter-channel crosstalk induced by thermal gradients can be mitigated using multi-channel equalisation processing. PMID:27615808

Orbital Angular Momentum-based Space Division Multiplexing for High-capacity Underwater Optical Communications

NASA Astrophysics Data System (ADS)

Ren, Yongxiong; Li, Long; Wang, Zhe; Kamali, Seyedeh Mahsa; Arbabi, Ehsan; Arbabi, Amir; Zhao, Zhe; Xie, Guodong; Cao, Yinwen; Ahmed, Nisar; Yan, Yan; Liu, Cong; Willner, Asher J.; Ashrafi, Solyman; Tur, Moshe; Faraon, Andrei; Willner, Alan E.

2016-09-01

To increase system capacity of underwater optical communications, we employ the spatial domain to simultaneously transmit multiple orthogonal spatial beams, each carrying an independent data channel. In this paper, we show up to a 40-Gbit/s link by multiplexing and transmitting four green orbital angular momentum (OAM) beams through a single aperture. Moreover, we investigate the degrading effects of scattering/turbidity, water current, and thermal gradient-induced turbulence, and we find that thermal gradients cause the most distortions and turbidity causes the most loss. We show systems results using two different data generation techniques, one at 1064 nm for 10-Gbit/s/beam and one at 520 nm for 1-Gbit/s/beam; we use both techniques since present data-modulation technologies are faster for infrared (IR) than for green. For the 40-Gbit/s link, data is modulated in the IR, and OAM imprinting is performed in the green using a specially-designed metasurface phase mask. For the 4-Gbit/s link, a green laser diode is directly modulated. Finally, we show that inter-channel crosstalk induced by thermal gradients can be mitigated using multi-channel equalisation processing.

Experimental investigation on circumferential and axial temperature gradient over fuel channel under LOCA

NASA Astrophysics Data System (ADS)

Yadav, Ashwini Kumar; kumar, Ravi; Gupta, Akhilesh; Chatterjee, Barun; Mukhopadhyay, Deb; Lele, H. G.

2014-06-01

In a nuclear reactor temperature rises drastically in fuel channels under loss of coolant accident due to failure of primary heat transportation system. Present investigation has been carried out to capture circumferential and axial temperature gradients during fully and partially voiding conditions in a fuel channel using 19 pin fuel element simulator. A series of experiments were carried out by supplying power to outer, middle and center rods of 19 pin fuel simulator in ratio of 1.4:1.1:1. The temperature at upper periphery of pressure tube (PT) was slightly higher than at bottom due to increase in local equivalent thermal conductivity from top to bottom of PT. To simulate fully voided conditions PT was pressurized at 2.0 MPa pressure with 17.5 kW power injection. Ballooning initiated from center and then propagates towards the ends and hence axial temperature difference has been observed along the length of PT. For asymmetric heating, upper eight rods of fuel simulator were activated and temperature difference up-to 250 °C has been observed from top to bottom periphery of PT. Such situation creates steep circumferential temperature gradient over PT and could lead to breaching of PT under high pressure.

Orbital Angular Momentum-based Space Division Multiplexing for High-capacity Underwater Optical Communications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ren, Yongxiong; Li, Long; Wang, Zhe

To increase system capacity of underwater optical communications, we employ the spatial domain to simultaneously transmit multiple orthogonal spatial beams, each carrying an independent data channel. In this paper, we show up to a 40-Gbit/s link by multiplexing and transmitting four green orbital angular momentum (OAM) beams through a single aperture. Moreover, we investigate the degrading effects of scattering/turbidity, water current, and thermal gradient-induced turbulence, and we find that thermal gradients cause the most distortions and turbidity causes the most loss. We show systems results using two different data generation techniques, one at 1064 nm for 10-Gbit/s/beam and one atmore » 520 nm for 1-Gbit/s/beam; we use both techniques since present data-modulation technologies are faster for infrared (IR) than for green. For the 40-Gbit/s link, data is modulated in the IR, and OAM imprinting is performed in the green using a specially-designed metasurface phase mask. For the 4-Gbit/s link, a green laser diode is directly modulated. Lastly, we show that inter-channel crosstalk induced by thermal gradients can be mitigated using multi-channel equalisation processing.« less

Orbital Angular Momentum-based Space Division Multiplexing for High-capacity Underwater Optical Communications.

PubMed

Ren, Yongxiong; Li, Long; Wang, Zhe; Kamali, Seyedeh Mahsa; Arbabi, Ehsan; Arbabi, Amir; Zhao, Zhe; Xie, Guodong; Cao, Yinwen; Ahmed, Nisar; Yan, Yan; Liu, Cong; Willner, Asher J; Ashrafi, Solyman; Tur, Moshe; Faraon, Andrei; Willner, Alan E

2016-09-12

To increase system capacity of underwater optical communications, we employ the spatial domain to simultaneously transmit multiple orthogonal spatial beams, each carrying an independent data channel. In this paper, we show up to a 40-Gbit/s link by multiplexing and transmitting four green orbital angular momentum (OAM) beams through a single aperture. Moreover, we investigate the degrading effects of scattering/turbidity, water current, and thermal gradient-induced turbulence, and we find that thermal gradients cause the most distortions and turbidity causes the most loss. We show systems results using two different data generation techniques, one at 1064 nm for 10-Gbit/s/beam and one at 520 nm for 1-Gbit/s/beam; we use both techniques since present data-modulation technologies are faster for infrared (IR) than for green. For the 40-Gbit/s link, data is modulated in the IR, and OAM imprinting is performed in the green using a specially-designed metasurface phase mask. For the 4-Gbit/s link, a green laser diode is directly modulated. Finally, we show that inter-channel crosstalk induced by thermal gradients can be mitigated using multi-channel equalisation processing.

DOE Office of Scientific and Technical Information (OSTI.GOV)

H.E. Mynick, N. Pomphrey and P. Xanthopoulos

Recent progress in reducing turbulent transport in stellarators and tokamaks by 3D shaping using a stellarator optimization code in conjunction with a gyrokinetic code is presented. The original applications of the method focussed on ion temperature gradient transport in a quasi-axisymmetric stellarator design. Here, an examination of both other turbulence channels and other starting configurations is initiated. It is found that the designs evolved for transport from ion temperature gradient turbulence also display reduced transport from other transport channels whose modes are also stabilized by improved curvature, such as electron temperature gradient and ballooning modes. The optimizer is also appliedmore » to evolving from a tokamak, finding appreciable turbulence reduction for these devices as well. From these studies, improved understanding is obtained of why the deformations found by the optimizer are beneficial, and these deformations are related to earlier theoretical work in both stellarators and tokamaks.« less

Beam-driven acceleration in ultra-dense plasma media

DOE PAGES

Shin, Young-Min

2014-09-15

Accelerating parameters of beam-driven wakefield acceleration in an extremely dense plasma column has been analyzed with the dynamic framed particle-in-cell plasma simulator, and compared with analytic calculations. In the model, a witness beam undergoes a TeV/m scale alternating potential gradient excited by a micro-bunched drive beam in a 10 25 m -3 and 1.6 x 10 28 m -3 plasma column. The acceleration gradient, energy gain, and transformer ratio have been extensively studied in quasi-linear, linear-, and blowout-regimes. The simulation analysis indicated that in the beam-driven acceleration system a hollow plasma channel offers 20 % higher acceleration gradient by enlargingmore » the channel radius (r) from 0.2 Ap to 0.6 .Ap in a blowout regime. This paper suggests a feasibility of TeV/m scale acceleration with a hollow crystalline structure (e.g. nanotubes) of high electron plasma density.« less

Evaluation of differences between dual salt-pH gradient elution and mono gradient elution using a thermodynamic model: Simultaneous separation of six monoclonal antibody charge and size variants on preparative-scale ion exchange chromatographic resin.

PubMed

Lee, Yi Feng; Jöhnck, Matthias; Frech, Christian

2018-02-21

The efficiencies of mono gradient elution and dual salt-pH gradient elution for separation of six mAb charge and size variants on a preparative-scale ion exchange chromatographic resin are compared in this study. Results showed that opposite dual salt-pH gradient elution with increasing pH gradient and simultaneously decreasing salt gradient is best suited for the separation of these mAb charge and size variants on Eshmuno ® CPX. Besides giving high binding capacity, this type of opposite dual salt-pH gradient also provides better resolved mAb variant peaks and lower conductivity in the elution pools compared to single pH or salt gradients. To have a mechanistic understanding of the differences in mAb variants retention behaviors of mono pH gradient, parallel dual salt-pH gradient, and opposite dual salt-pH gradient, a linear gradient elution model was used. After determining the model parameters using the linear gradient elution model, 2D plots were used to show the pH and salt dependencies of the reciprocals of distribution coefficient, equilibrium constant, and effective ionic capacity of the mAb variants in these gradient elution systems. Comparison of the 2D plots indicated that the advantage of opposite dual salt-pH gradient system with increasing pH gradient and simultaneously decreasing salt gradient is the noncontinuous increased acceleration of protein migration. Furthermore, the fitted model parameters can be used for the prediction and optimization of mAb variants separation in dual salt-pH gradient and step elution. © 2018 American Institute of Chemical Engineers Biotechnol. Prog., 2018. © 2018 American Institute of Chemical Engineers.

Models of electroosmotic flow in micro- and nanochannels

NASA Astrophysics Data System (ADS)

Zheng, Z.; Conlisk, A. T.; Sadr, R.; Yoda, M.

2003-11-01

Understanding electrooosmotic flow (EOF) is essential for developing efficient drug delivery and rapid biomolecular analysis devices given the extremely high pressure gradients required to drive flows through channels smaller than about 10 μ m. We consider fully-developed and steady EOF in one- and two-dimensional micro- and nanochannel geometries. The fluid, which is assumed to behave as a continuum, is a mixture of a neutral solvent such as water and a salt where the ionic species are entirely dissociated. The model can be used to analyze EOF where the opposite channel walls are oppositely charged and EOF with arbitrary electric double layer thickness. Unlike most previous models which assume a wall ζ -potential a priori, the model calculates the boundary conditions for the (wall) mole fractions using the equilibrium electrochemical potential in the upstream reservoir. We can therefore predict the wall ζ -potential, and calculate EOF with spatially and temporally varying wall ζ -potentials. The model results for electroosmotic mobility and volumetric flow rate are compared with those from three independent experimental datasets, and found to be in good agreement with all three sets of experimental data for channel sizes ranging from O(10 nm) to O(10 μ m). The limits of the continuum theory for EOF are discussed.

Biological, morphological, and chemical characteristics of Wailuku River, Hawaii

USGS Publications Warehouse

Yee, J.J.; Ewart, C.J.

1986-01-01

Biological, morphological, and chemical data on Wailuku River were collected to assess its water quality characteristics. Biological measurements included evaluation of benthic invertebrates, periphyton, phytoplankton and coliform bacteria. Morphological measurements consisted of channel surveys and particle size determination of bed materials. Chemical quality measurements, made monthly at two sampling stations, included water temperature, pH, specific conductance, dissolved solids concentration, turbidity, dissolved oxygen, nitrogen, phosphorus , and minor elements. Biological and chemical data indicated relatively clean water compared to similar streams in conterminous United States. The number and types of benthic organisms are low in Wailuku River. This is due mainly to channel gradient and flow velocities rather than to chemical toxicity. Periphyton data also indicate unpolluted water of low to moderate primary productivity. Diatoms are the dominant organisms observed in the periphyton samples. Coliform bacteria densities are typical of mountain streams in Hawaii that are essentially unaffected by human activities. The streambed is formed of lava flows from Mauna Loa volcano, and the stream channel is characterized by a series of plunge pools and waterfalls. The longitudinal slope ranges from 5% at midreaches to 8% at the headwater regions. There is no broad flood plain at the mouth of the stream. The stream channel is generally a narrow steep-sided trapezoid with an irregular base. Streambanks are composed of fine to very coarse-grained material. Channel depth increases from 6 ft at the headwaters to 40 ft at Hilo. The width also increases from 60 ft at the highest study site to 220 ft at the Hilo site near the mouth of the river. (Author 's abstract)

Krebs cycle metabolon formation: metabolite concentration gradient enhanced compartmentation of sequential enzymes.

PubMed

Wu, Fei; Pelster, Lindsey N; Minteer, Shelley D

2015-01-25

Dynamics of metabolon formation in mitochondria was probed by studying diffusional motion of two sequential Krebs cycle enzymes in a microfluidic channel. Enhanced directional co-diffusion of both enzymes against a substrate concentration gradient was observed in the presence of intermediate generation. This reveals a metabolite directed compartmentation of metabolic pathways.

Microchip electrospray: improvements in spray and signal stability during gradient elution by an inverted postcolumn makeup flow.

PubMed

Jung, Stephanie; Effelsberg, Uwe; Tallarek, Ulrich

2011-12-01

Dynamic changes in mobile phase composition during high-performance liquid chromatography (HPLC) gradient elution coupled to mass spectrometry (MS) sensitively affect electrospray modes. We investigate the impact of the eluent composition on spray stability and MS response by infusion and injection experiments with a small tetrapeptide in water-acetonitrile mixtures. The employed HPLC/electrospray (ESI)-MS configuration uses a microchip equipped with an enrichment column, a separation column, and a makeup flow (MUF) channel. One nano pump is connected to the separation column, while a second one delivers solvent of exactly inverted composition to the MUF channel. Both solvent streams are united behind the separation column, before the ESI tip, such that the resulting electrosprayed solution always has identical composition during a gradient elution. Analyte peak parameters without and with MUF compensation are determined and discussed with respect to the electrospray mode and eluent composition. The postcolumn MUF significantly improves spray and signal stability over the entire solvent gradient, without compromising the performance of the HPLC separation column. It can also be conveniently implemented on microchip platforms.

Rip currents and alongshore flows in single channels dredged in the surf zone

NASA Astrophysics Data System (ADS)

Moulton, Melissa; Elgar, Steve; Raubenheimer, Britt; Warner, John C.; Kumar, Nirnimesh

2017-05-01

To investigate the dynamics of flows near nonuniform bathymetry, single channels (on average 30 m wide and 1.5 m deep) were dredged across the surf zone at five different times, and the subsequent evolution of currents and morphology was observed for a range of wave and tidal conditions. In addition, circulation was simulated with the numerical modeling system COAWST, initialized with the observed incident waves and channel bathymetry, and with an extended set of wave conditions and channel geometries. The simulated flows are consistent with alongshore flows and rip-current circulation patterns observed in the surf zone. Near the offshore-directed flows that develop in the channel, the dominant terms in modeled momentum balances are wave-breaking accelerations, pressure gradients, advection, and the vortex force. The balances vary spatially, and are sensitive to wave conditions and the channel geometry. The observed and modeled maximum offshore-directed flow speeds are correlated with a parameter based on the alongshore gradient in breaking-wave-driven-setup across the nonuniform bathymetry (a function of wave height and angle, water depths in the channel and on the sandbar, and a breaking threshold) and the breaking-wave-driven alongshore flow speed. The offshore-directed flow speed increases with dissipation on the bar and reaches a maximum (when the surf zone is saturated) set by the vertical scale of the bathymetric variability.

Rip currents and alongshore flows in single channels dredged in the surf zone

USGS Publications Warehouse

Moulton, Melissa; Elgar, Steve; Raubenheimer, Britt; Warner, John C.; Kumar, Nirnimesh

2017-01-01

To investigate the dynamics of flows near nonuniform bathymetry, single channels (on average 30 m wide and 1.5 m deep) were dredged across the surf zone at five different times, and the subsequent evolution of currents and morphology was observed for a range of wave and tidal conditions. In addition, circulation was simulated with the numerical modeling system COAWST, initialized with the observed incident waves and channel bathymetry, and with an extended set of wave conditions and channel geometries. The simulated flows are consistent with alongshore flows and rip-current circulation patterns observed in the surf zone. Near the offshore-directed flows that develop in the channel, the dominant terms in modeled momentum balances are wave-breaking accelerations, pressure gradients, advection, and the vortex force. The balances vary spatially, and are sensitive to wave conditions and the channel geometry. The observed and modeled maximum offshore-directed flow speeds are correlated with a parameter based on the alongshore gradient in breaking-wave-driven-setup across the nonuniform bathymetry (a function of wave height and angle, water depths in the channel and on the sandbar, and a breaking threshold) and the breaking-wave-driven alongshore flow speed. The offshore-directed flow speed increases with dissipation on the bar and reaches a maximum (when the surf zone is saturated) set by the vertical scale of the bathymetric variability.

Influence of Wetland and Channel Sediments on Strontium-90 Transport in the Borschi Stream, near Chernobyl

NASA Astrophysics Data System (ADS)

Freed, R.; Smith, L.; Bugai, D.

2001-12-01

In the Borschi watershed, 3 km south of the Chernobyl nuclear power plant, we have found the transfer of 90Sr in wetlands pore waters to surface waters and the subsequent flow of wetland surface waters to the stream, largely effect the concentration of 90Sr in the Borschi channel. In Borschi, we have observed that during most of the year, wetlands are the main source of 90Sr contributing to the Borschi stream and channel bottom sediments are a secondary source. Wetland pore waters have at least an order of magnitude higher concentration of 90Sr than all other surface and subsurface waters. Pore water data obtained using peepers shows the 90Sr diffusion gradient is high in near-surface wetland sediments while the 90Sr diffusion gradient is moderate to insignificant in near-surface channel sediments. Channel and wetland sediments are highly depleted in 90Sr compared with immobile nuclear fission products such as europium-154 and can account for all of the 90Sr removed by the stream since the accident. While channel sediments are largely depleted in exchangeable 90Sr, wetland sediments represent a large source of exchangeable 90Sr. Removal of 90Sr by the stream from the wetland and channel sediments is on the same order as mass loss by decay.

Concentration of Immunoglobulins in Microfiltration Permeates of Skim Milk: Impact of Transmembrane Pressure and Temperature on the IgG Transmission Using Different Ceramic Membrane Types and Pore Sizes.

PubMed

Heidebrecht, Hans-Jürgen; Toro-Sierra, José; Kulozik, Ulrich

2018-06-28

The use of bioactive bovine milk immunoglobulins (Ig) has been found to be an alternative treatment for certain human gastrointestinal diseases. Some methodologies have been developed with bovine colostrum. These are considered in laboratory scale and are bound to high cost and limited availability of the raw material. The main challenge remains in obtaining high amounts of active IgG from an available source as mature cow milk by the means of industrial processes. Microfiltration (MF) was chosen as a process variant, which enables a gentle and effective concentration of the Ig fractions (ca. 0.06% in raw milk) while reducing casein and lactose at the same time. Different microfiltration membranes (ceramic standard and gradient), pore sizes (0.14⁻0.8 µm), transmembrane pressures (0.5⁻2.5 bar), and temperatures (10, 50 °C) were investigated. The transmission of immunoglobulin G (IgG) and casein during the filtration of raw skim milk (<0.1% fat) was evaluated during batch filtration using a single channel pilot plant. The transmission levels of IgG (~160 kDa) were measured to be at the same level as the reference major whey protein β-Lg (~18 kDa) at all evaluated pore sizes and process parameters despite the large difference in molecular mass of both fractions. Ceramic gradient membranes with a pore sizes of 0.14 µm showed IgG-transmission rates between 45% to 65% while reducing the casein fraction below 1% in the permeates. Contrary to the expectations, a lower pore size of 0.14 µm yielded fluxes up to 35% higher than 0.2 µm MF membranes. It was found that low transmembrane pressures benefit the Ig transmission. Upscaling the presented results to a continuous MF membrane process offers new possibilities for the production of immunoglobulin enriched supplements with well-known processing equipment for large scale milk protein fractionation.

Twig-leaf size relationships in woody plants vary intraspecifically along a soil moisture gradient

NASA Astrophysics Data System (ADS)

Yang, Xiao-Dong; Yan, En-Rong; Chang, Scott X.; Wang, Xi-Hua; Zhao, Yan-Tao; Shi, Qing-Ru

2014-10-01

Understanding scaling relationships between twig size and leaf size along environmental gradients is important for revealing strategies of plant biomass allocation with changing environmental constraints. However, it remains poorly understood how variations in the slope and y-intercept in the twig-leaf size relationship partition among individual, population and species levels across communities. Here, we determined the scaling relationships between twig cross-sectional area (twig size) and total leaf area per twig (leaf size) among individual, population and species levels along a soil moisture gradient in subtropical forests in eastern China. Twig and leaf tissues from 95 woody plant species were collected from three sites that form a soil moisture gradient: a wet site (W), a mesophytic site (M), and a dry site (D). The variance in scaling slope and y-intercept was partitioned among individual, population and species levels using a nested ANOVA. In addition, the change in the twig-leaf size relationship over the soil moisture gradient was determined for each of overlapping and turnover species. Twig size was positively related to leaf size across the three levels, with the variance partitioned at the individual level in scaling slope and y-intercept being 98 and 90%, respectively. Along the soil moisture gradient, the twig-leaf size relationship differed inter- and intraspecifically. At the species and population levels, there were homogeneous slopes but the y-intercept was W > M = D. In contrast, at the individual level, the regression slopes were heterogeneous among the three sites. More remarkably, the twig-leaf size relationships changed from negative allometry for overlapping species to isometry for turnover species. This study provides strong evidence for the twig-leaf size relationship to be intraspecific, particularly at the individual level. Our findings suggest that whether or not species have overlapping habitats is crucial for shaping the deployment pattern between twigs and leaves.

Behavior of Caulobacter Crescentus Diagnosed Using a 3-Channel Microfluidic Device

NASA Astrophysics Data System (ADS)

Tang, Jay; Morse, Michael; Colin, Remy; Wilson, Laurence

2015-03-01

Many motile microorganisms are able to detect chemical gradients in their surroundings in order to bias their motion towards more favorable conditions. We study the biased motility of Caulobacter crescentus, a singly flagellated bacteria, which alternate between forward and backward swimming, driven by its flagella motor, which switches in rotation direction. We observe the swimming patterns of C. crescents in an oxygen gradient, which is established by flowing atmospheric air and pure nitrogen through a 3 parallel channel microfluidic device. In this setup, oxygen diffuses through the PDMS device and the bacterial medium, creating a linear gradient. Using low magnification, dark field microscopy, individual cells are tracked over a large field of view, with particular interest in the cells' motion relative to the oxygen gradient. Utilizing observable differences between backward and forward swimming motion, motor switching events can be identified. By analyzing these run time intervals between motor switches as a function of a cell's local oxygen level, we demonstrate that C. crescentus displays aerotacitc behavior by extending forward swimming run times while moving up an oxygen gradient, resulting in directed motility towards oxygen sources. Additionally, motor switching response is sensitive to both the steepness of the gradient experienced and background oxygen levels with cells exhibiting a logarithmic response to oxygen levels. Work funded by the United States National Science Foundation and by the Rowland Institute at Harvard University.

Influence of temperature gradients on charge transport in asymmetric nanochannels.

PubMed

Benneker, Anne M; Wendt, Hans David; Lammertink, Rob G H; Wood, Jeffery A

2017-10-25

Charge selective asymmetric nanochannels are used for a variety of applications, such as nanofluidic sensing devices and energy conversion applications. In this paper, we numerically investigate the influence of an applied temperature difference over tapered nanochannels on the resulting charge transport and flow behavior. Using a temperature-dependent formulation of the coupled Poisson-Nernst-Planck and Navier-Stokes equations, various nanochannel geometries are investigated. Temperature has a large influence on the total ion transport, as the diffusivity of ions and viscosity of the solution are strongly affected by temperature. We find that the selectivity of the nanochannels is enhanced with increasing asymmetry ratios, while the total current is reduced at higher asymmetry cases. Most interestingly, we find that applying a temperature gradient along the electric field and along the asymmetry direction of the nanochannel enhances the selectivity of the tapered channels even further, while a temperature gradient countering the electric field reduces the selectivity of the nanochannel. Current rectification is enhanced in asymmetric nanochannels if a temperature gradient is applied, independent of the direction of the temperature difference. However, the degree of rectification is dependent on the direction of the temperature gradient with respect to the channel geometry and the electric field direction. The enhanced selectivity of nanochannels due to applied temperature gradients could result in more efficient operation in energy harvesting or desalination applications, motivating experimental investigations.

Interaction of rate- and size-effect using a dislocation density based strain gradient viscoplasticity model

NASA Astrophysics Data System (ADS)

Nguyen, Trung N.; Siegmund, Thomas; Tomar, Vikas; Kruzic, Jamie J.

2017-12-01

Size effects occur in non-uniform plastically deformed metals confined in a volume on the scale of micrometer or sub-micrometer. Such problems have been well studied using strain gradient rate-independent plasticity theories. Yet, plasticity theories describing the time-dependent behavior of metals in the presence of size effects are presently limited, and there is no consensus about how the size effects vary with strain rates or whether there is an interaction between them. This paper introduces a constitutive model which enables the analysis of complex load scenarios, including loading rate sensitivity, creep, relaxation and interactions thereof under the consideration of plastic strain gradient effects. A strain gradient viscoplasticity constitutive model based on the Kocks-Mecking theory of dislocation evolution, namely the strain gradient Kocks-Mecking (SG-KM) model, is established and allows one to capture both rate and size effects, and their interaction. A formulation of the model in the finite element analysis framework is derived. Numerical examples are presented. In a special virtual creep test with the presence of plastic strain gradients, creep rates are found to diminish with the specimen size, and are also found to depend on the loading rate in an initial ramp loading step. Stress relaxation in a solid medium containing cylindrical microvoids is predicted to increase with decreasing void radius and strain rate in a prior ramp loading step.

Gradient and size effects on spinodal and miscibility gaps

NASA Astrophysics Data System (ADS)

Tsagrakis, Ioannis; Aifantis, Elias C.

2018-05-01

A thermodynamically consistent model of strain gradient elastodiffusion is developed. Its formulation is based on the enhancement of a robust theory of gradient elasticity, known as GRADELA, to account for a Cahn-Hilliard type of diffusion. Linear stability analysis is employed to determine the influence of concentration and strain gradients on the spinodal decomposition. For finite domains, spherically symmetric conditions are considered, and size effects on spinodal and miscibility gaps are discussed. The theoretical predictions are in agreement with the experimental trends, i.e., both gaps shrink as the grain diameter decreases and they are completely eliminated for crystals smaller than a critical size.

Dryland anabranching river morphodynamics: Río Capilla, Salar de Uyuni, Bolivia

NASA Astrophysics Data System (ADS)

Li, Jiaguang; Bristow, Charlie S.; Luthi, Stefan M.; Donselaar, Marinus E.

2015-12-01

The dryland anabranching river Río Capilla is characterized by nonvegetated and vegetated reaches with prominent channel morphology. To identify the morphodynamics of such dryland anabranching systems and their controls, we investigated the Río Capilla of the southern Altiplano Plateau using high-resolution satellite imagery and field measurements. Comparison of high-resolution satellite data reveals that erosion exceeds deposition for the main channel, accompanied by changes in channel planform, such as meander and channel morphology. On-site surveys combined with high-precision GPS and high-resolution satellite imagery show that channels are characterized by shallowness and poor development of levees. The study area of the Río Capilla is divided into two zones of different slopes: zone 1 with a high slope and zone 2 with a low slope. Zone 1 has a relatively straight main channel with few anabranches and grass-covered banks that are stable despite the high gradient; whereas zone 2 is typified by more anabranches with nonvegetated banks, and the main channel experiences prominent bank accretion and erosion. Excavations show that point-bar deposits are fine-sand-dominated in two reaches and that river banks primarily consist of silt and clay. The limited vegetation cover and abundance of desiccation cracks and macropores make the river bank more erodible leading to pronounced lateral migration in this low-gradient dryland river system. Shallow channels and poor development of levees in combination with in-channel accretionary benches result in frequent overbank flooding, which results in a high density of crevasse splays over unconsolidated river banks and accretionary benches. Connection of headcuts and crevasse channels together with lateral migration and chute channels and reactivation of partially abandoned meanders produces an anabranching pattern in such dryland river systems.

Modeling lateral circulation and its influence on the along-channel flow in a branched estuary

NASA Astrophysics Data System (ADS)

Zhu, Lei; He, Qing; Shen, Jian

2018-02-01

A numerical modeling study of the influence of the lateral flow on the estuarine exchange flow was conducted in the north passage of the Changjiang estuary. The lateral flows show substantial variabilities within a flood-ebb tidal cycle. The strong lateral flow occurring during flood tide is caused primarily by the unique cross-shoal flow that induces a strong northward (looking upstream) barotropic force near the surface and advects saltier water toward the northern part of the channel, resulting in a southward baroclinic force caused by the lateral density gradient. Thus, a two-layer structure of lateral flows is produced during the flood tide. The lateral flows are vigorous near the flood slack and the magnitude can exceed that of the along-channel tidal flow during that period. The strong vertical shear of the lateral flows and the salinity gradient in lateral direction generate lateral tidal straining, which are out of phase with the along-channel tidal straining. Consequently, stratification is enhanced at the early stage of the ebb tide. In contrast, strong along-channel straining is apparent during the late ebb tide. The vertical mixing disrupts the vertical density gradient, thus suppressing stratification. The impact of lateral straining on stratification during spring tide is more pronounced than that of along-channel straining during late flood and early ebb tides. The momentum balance along the estuary suggests that lateral flow can augment the residual exchange flow. The advection of lateral flows brings low-energy water from the shoal to the deep channel during the flood tide, whereas the energetic water is moved to the shoal via lateral advection during the ebb tide. The impact of lateral flow on estuarine circulation of this multiple-channel estuary is different from single-channel estuary. A model simulation by blocking the cross-shoal flow shows that the magnitudes of lateral flows and tidal straining are reduced. Moreover, the reduced lateral tidal straining results in a decrease in vertical stratification from the late flood to early ebb tides during the spring tide. By contrast, the along-channel tidal straining becomes dominant. The model results illustrate the important dynamic linkage between lateral flows and estuarine dynamics in the Changjiang estuary.

A mathematical model for the movement of food bolus of varying viscosities through the esophagus

NASA Astrophysics Data System (ADS)

Tripathi, Dharmendra

2011-09-01

This mathematical model is designed to study the influence of viscosity on swallowing of food bolus through the esophagus. Food bolus is considered as viscous fluid with variable viscosity. Geometry of esophagus is assumed as finite length channel and flow is induced by peristaltic wave along the length of channel walls. The expressions for axial velocity, transverse velocity, pressure gradient, volume flow rate and stream function are obtained under the assumptions of long wavelength and low Reynolds number. The impacts of viscosity parameter on pressure distribution, local wall shear stress, mechanical efficiency and trapping are numerically discussed with the help of computational results. On the basis of presented study, it is revealed that swallowing of low viscous fluids through esophagus requires less effort in comparison to fluids of higher viscosity. This result is similar to the experimental result obtained by Raut et al. [1], Dodds [2] and Ren et al. [3]. It is further concluded that the pumping efficiency increases while size of trapped bolus reduces when viscosity of fluid is high.

Comparative evaluation of 1D and quasi-2D hydraulic models based on benchmark and real-world applications for uncertainty assessment in flood mapping

NASA Astrophysics Data System (ADS)

Dimitriadis, Panayiotis; Tegos, Aristoteles; Oikonomou, Athanasios; Pagana, Vassiliki; Koukouvinos, Antonios; Mamassis, Nikos; Koutsoyiannis, Demetris; Efstratiadis, Andreas

2016-03-01

One-dimensional and quasi-two-dimensional hydraulic freeware models (HEC-RAS, LISFLOOD-FP and FLO-2d) are widely used for flood inundation mapping. These models are tested on a benchmark test with a mixed rectangular-triangular channel cross section. Using a Monte-Carlo approach, we employ extended sensitivity analysis by simultaneously varying the input discharge, longitudinal and lateral gradients and roughness coefficients, as well as the grid cell size. Based on statistical analysis of three output variables of interest, i.e. water depths at the inflow and outflow locations and total flood volume, we investigate the uncertainty enclosed in different model configurations and flow conditions, without the influence of errors and other assumptions on topography, channel geometry and boundary conditions. Moreover, we estimate the uncertainty associated to each input variable and we compare it to the overall one. The outcomes of the benchmark analysis are further highlighted by applying the three models to real-world flood propagation problems, in the context of two challenging case studies in Greece.

Particle Size Effects on CL-20 Initiation and Detonation

NASA Astrophysics Data System (ADS)

Valancius, Cole; Bainbridge, Joe; Love, Cody; Richardson, Duane

2017-06-01

Particle size or specific surface area effects on explosives has been of interest to the explosives community for both application and modeling of initiation and detonation. Different particles sizes of CL-20 were used in detonator experiments to determine the effects of particle size on initiation, run-up to steady state detonation, and steady state detonation. Historical tests have demonstrated a direct relationship between particle size and initiation. However, historical tests inadvertently employed density gradients, making it difficult to discern the effects of particle size from the effects of density. Density gradients were removed from these tests using a larger diameter, shorter charge column, allowing for similar loading across different particle sizes. Without the density gradient, the effects of particle size on initiation and detonation are easier to determine. The results of which contrast with historical results, showing particle size does not directly affect initiation threshold.

Size and DNA distributions of electrophoretically separated cultured human kidney cells

NASA Technical Reports Server (NTRS)

Kunze, M. E.; Plank, L. D.; Todd, P. W.

1985-01-01

Electrophoretic purification of purifying cultured cells according to function presumes that the size of cycle phase of a cell is not an overriding determinant of its electrophoretic velocity in an electrophoretic separator. The size distributions and DNA distributions of fractions of cells purified by density gradient electrophoresis were determined. No systematic dependence of electrophoretic migration upward in a density gradient column upon either size or DNA content were found. It was found that human leukemia cell populations, which are more uniform function and found in all phases of the cell cycle during exponential growth, separated on a vertical sensity gradient electrophoresis column according to their size, which is shown to be strictly cell cycle dependent.

SU-G-IeP1-12: Size Selective Arterial Cerebral Blood Volume Mapping Using Multiple Inversion Time Arterial Spin Labeling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jung, Y; Johnston, M; Whitlow, C

Purpose: To demonstrate the feasibility of a novel method for size specific arterial cerebral blood volume (aCBV) mapping using pseudo-continuous arterial spin labeling (PCASL), with multiple TI. Methods: Multiple PCASL images were obtained from a subject with TI of [300, 400, 500, 600, 700, 800, 900, 1000, 1500, 2000, 2500, 3000, 3500, 4000] ms. Each TI pair was averaged six times. Two scans were performed: one without a flow crusher gradient and the other with a crusher gradient (10cm/s in three directions) to remove signals from large arteries. Scan times were 5min. without a crusher gradient and 5.5 min withmore » a crusher gradient. Non-linear fitting algorithm finds the minimum mean squared solution of per-voxel based aCBV, cerebral blood flow, and arterial transit time, and fits the data into a hemodynamic model that represents superposition of blood volume and flow components within a single voxel. Results: aCBV maps with a crusher gradient represent signals from medium and small sized arteries, while those without a crusher gradient represent signals from all sized arteries, indicating that flow crusher gradients can be effectively employed to achieve size-specific aCBV mapping. Regardless of flow crusher, the CBF and ATT maps are very similar in appearance. Conclusion: Quantitative size selective blood volume mapping controlled by a flow crusher is feasible without additional information because the ASL quantification process doesn’t require an arterial input function measured from a large artery. The size specific blood volume mapping is not interfered by sSignals from large arteries do not interfere with size specific aCBV mapping in the applications of interest in for applications in which only medium or small arteries are of interest.« less

Development of Ca2+ hotspots between Lymnaea neurons during synaptogenesis

PubMed Central

Feng, Zhong-Ping; Grigoriev, Nikita; Munno, David; Lukowiak, Ken; MacVicar, Brian A; Goldberg, Jeffrey I; Syed, Naweed I

2002-01-01

Calcium (Ca2+) channel clustering at specific presynaptic sites is a hallmark of mature synapses. However, the spatial distribution patterns of Ca2+ channels at newly formed synapses have not yet been demonstrated. Similarly, it is unclear whether Ca2+ ‘hotspots’ often observed at the presynaptic sites are indeed target cell contact specific and represent a specialized mechanism by which Ca2+ channels are targeted to select synaptic sites. Utilizing both soma–soma paired (synapsed) and single neurons from the mollusk Lymnaea, we have tested the hypothesis that differential gradients of voltage-dependent Ca2+ signals develop in presynaptic neuron at its contact point with the postsynaptic neuron; and that these Ca2+ hotspots are target cell contact specific. Fura-2 imaging, or two-photon laser scanning microscopy of Calcium Green, was coupled with electrophysiological techniques to demonstrate that voltage-induced Ca2+ gradients (hotspots) develop in the presynaptic cell at its contact point with the postsynaptic neuron, but not in unpaired single cells. The incidence of Ca2+ hotspots coincided with the appearance of synaptic transmission between the paired cells, and these gradients were target cell contact specific. In contrast, the voltage-induced Ca2+ signal in unpaired neurons was uniformly distributed throughout the somata; a similar pattern of Ca2+ gradient was observed in the presynaptic neuron when it was soma–soma paired with a non-synaptic partner cell. Moreover, voltage clamp recording techniques, in conjunction with a fast, optical differential perfusion system, were used to demonstrate that the total whole-cell Ca2+ (or Ba2+) current density in single and paired cells was not significantly different. However, the amplitude of Ba2+ current was significantly higher in the presynaptic cell at its contact side with the postsynaptic neurons, compared with non-contacted regions. In summary, this study demonstrates that voltage-induced Ca2+ hotspots develop in the presynaptic cell, concomitant with the appearance of synaptic transmission between the soma–soma paired cells. The appearance of Ca2+ gradients in presynaptic neurons is target cell contact specific and is probably due to a spatial redistribution of existing channels during synaptogenesis. PMID:11850501

Bathymetric controls on sediment transport in the Hudson River estuary: Lateral asymmetry and frontal trapping

USGS Publications Warehouse

Ralston, David K.; Geyer, W. Rockwell; Warner, John C.

2012-01-01

Analyses of field observations and numerical model results have identified that sediment transport in the Hudson River estuary is laterally segregated between channel and shoals, features frontal trapping at multiple locations along the estuary, and varies significantly over the spring-neap tidal cycle. Lateral gradients in depth, and therefore baroclinic pressure gradient and stratification, control the lateral distribution of sediment transport. Within the saline estuary, sediment fluxes are strongly landward in the channel and seaward on the shoals. At multiple locations, bottom salinity fronts form at bathymetric transitions in width or depth. Sediment convergences near the fronts create local maxima in suspended-sediment concentration and deposition, providing a general mechanism for creation of secondary estuarine turbidity maxima at bathymetric transitions. The lateral bathymetry also affects the spring-neap cycle of sediment suspension and deposition. In regions with broad, shallow shoals, the shoals are erosional and the channel is depositional during neap tides, with the opposite pattern during spring tides. Narrower, deeper shoals are depositional during neaps and erosional during springs. In each case, the lateral transfer is from regions of higher to lower bed stress, and depends on the elevation of the pycnocline relative to the bed. Collectively, the results indicate that lateral and along-channel gradients in bathymetry and thus stratification, bed stress, and sediment flux lead to an unsteady, heterogeneous distribution of sediment transport and trapping along the estuary rather than trapping solely at a turbidity maximum at the limit of the salinity intrusion.

Gravikinesis in Stylonychia mytilus is based on membrane potential changes.

PubMed

Krause, Martin; Bräucker, Richard; Hemmersbach, Ruth

2010-01-01

The graviperception of the hypotrichous ciliate Stylonychia mytilus was investigated using electrophysiological methods and behavioural analysis. It is shown that Stylonychia can sense gravity and thereby compensates sedimentation rate by a negative gravikinesis. The graviresponse consists of a velocity-regulating physiological component (negative gravikinesis) and an additional orientational component. The latter is largely based on a physical mechanism but might, in addition, be affected by the frequency of ciliary reversals, which is under physiological control. We show that the external stimulus of gravity is transformed to a physiological signal, activating mechanosensitive calcium and potassium channels. Earlier electrophysiological experiments revealed that these ion channels are distributed in the manner of two opposing gradients over the surface membrane. Here, we show, for the first time, records of gravireceptor potentials in Stylonychia that are presumably based on this two-gradient system of ion channels. The gravireceptor potentials had maximum amplitudes of approximately 4 mV and slow activation characteristics (0.03 mV s(-1)). The presumptive number of involved graviperceptive ion channels was calculated and correlates with the analysis of the locomotive behaviour.

Segregation physics of a macroscale granular ratchet

NASA Astrophysics Data System (ADS)

Bhateja, Ashish; Sharma, Ishan; Singh, Jayant K.

2017-05-01

New experiments with multigrain mixtures in a laterally shaken, horizontal channel show complete axial segregation of species. The channel consists of multiple concatenated trapeziums, and superficially resembles microratchets wherein asymmetric geometries and potentials transport, and sort, randomly agitated microscopic particles. However, the physics of our macroscale granular ratchet is fundamentally different, as macroscopic segregation is gravity driven. Our observations are not explained by classical granular segregation theories either. Motivated by the experiments, extensive parallelized discrete element simulations reveal that the macroratchet differentiates grains through hierarchical bidirectional segregation over two different time scales: Grains rapidly sort vertically into horizontal bands spanning the channel's length that, subsequently, slowly separate axially, driven by strikingly gentle, average interfacial pressure gradients acting over long distances. At its maximum, the pressure gradient responsible for axial separation was due to a change in height of about two big grain diameters (d =7 mm) over a meter-long channel. The strong directional segregation achieved by the granular macroratchet has practical importance, while identifying the underlying new physics will further our understanding of granular segregation in industrial and geophysical processes.

Downstream reduction of rural channel size with contrasting urban effects in small coastal streams of southeastern Australia

NASA Astrophysics Data System (ADS)

Nanson, G. C.; Young, R. W.

1981-07-01

Although most streams show a downstream increase in channel size corresponding to a downstream increase in flood discharges, those flowing off the Illawarra escarpment of New South Wales show a marked reduction of channel size, accompanied by a down-stream increase in flood frequency in their lower reaches. Within the confined and steeply sloping valleys of the escarpment foothills, bed and bank sediments are relatively coarse and uncohesive, and channels increase in size, corresponding to increasing discharge downstream. However, once these streams emerge into more open rural valleys at lower slopes and are accompanied by extensive floodplains formed of fine cohesive sediment, there is a dramatic reduction in channel size. This decrease in channel size apparently results from a sudden decline in channel slope and associated stream power, the cohesive nature of downstream alluvium, its retention on the channel banks by a dense cover of pasture grasses, and the availability of an extensive floodplain to carry displaced floodwater. Under these conditions floodwaters very frequently spill out over the floodplain and the downstream channel-flow becomes a relatively unimportant component of the total peak discharge. This emphasizes the importance of these floodplains as a part of the total channel system. In situations where urban development has increased peak runoff and reduced the available area of effective floodplain, stream channels formed in this fine alluvium rapidly entrench and increase in cross-sectional area by 2-3 times. Minor man-induced channel alteration and maintenance appears to trigger this enlargement.

Stability of River Bifurcations from Bedload to Suspended Load Dominated Conditions

NASA Astrophysics Data System (ADS)

de Haas, T.; Kleinhans, M. G.

2010-12-01

Bifurcations (also called diffluences) are as common as confluences in braided and anabranched rivers, and more common than confluences on alluvial fans and deltas where the network is essentially distributary. River bifurcations control the partitioning of both water and sediment through these systems with consequences for immediate river and coastal management and long-term evolution. Their stability is poorly understood and seems to differ between braided rivers, meandering river plains and deltas. In particular, it is the question to what extent the division of flow is asymmetrical in stable condition, where highly asymmetrical refers to channel closure and avulsion. Recent work showed that bifurcations in gravel bed braided rivers become more symmetrical with increasing sediment mobility, whereas bifurcations in a lowland sand delta become more asymmetrical with increasing sediment mobility. This difference is not understood and our objective is to resolve this issue. We use a one-dimensional network model with Y-shaped bifurcations to explore the parameter space from low to high sediment mobility. The model solves gradually varied flow, bedload transport and morphological change in a straightforward manner. Sediment is divided at the bifurcation including the transverse slope effect and the spiral flow effect caused by bends at the bifurcation. Width is evolved whilst conserving mass of eroded or built banks with the bed balance. The bifurcations are perturbed from perfect symmetry either by a subtle gradient advantage for one branch or a gentle bend at the bifurcation. Sediment transport was calculated with and without a critical threshold for sediment motion. Sediment mobility, determined in the upstream channel, was varied in three different ways to isolate the causal factor: by increasing discharge, increasing channel gradient and decreasing particle size. In reality the sediment mobility is mostly determined by particle size: gravel bed rivers are near the threshold for sediment motion whereas sand bed rivers have highly mobile sediment at channel-forming conditions. For sediment transport without a critical threshold for motion, bifurcations become more asymmetrical with increasing sediment mobility. In contrast, sediment transport prediction including the threshold for motion leads to highly asymmetrical bifurcations for low sediment mobility, more symmetrical bifurcations for higher mobility and again decreasing symmetry for higher mobility where results of transport with and without the threshold converge. Thus, the general trend is more asymmetrical bifurcations for higher sediment mobility, but the presence of the threshold for motion leads to an optimum in symmetry. Results were similar for the different options used to vary mobility, excluding first-order effects of backwater adaptation length and hydraulic roughness. We conclude that the seemingly conflicting results between gravel-bed and sand-bed rivers in literature are well explained by the difference in sediment mobility.

Intrinsic controls on the range of volumes, morphologies, and dimensions of submarine lobes

NASA Astrophysics Data System (ADS)

Prélat, A.; Covault, J. A.; Hodgson, D. M.; Fildani, A.; Flint, S. S.

2010-12-01

Submarine lobe dimensions from six different systems are compared: 1) the exhumed Permian Fan 3 lobe complex of the Tanqua Karoo, South Africa; 2) the modern Amazon fan channel-mouth lobe complex, offshore Brazil; 3) a portion of the modern distal Zaïre fan, offshore Angola/Congo; 4) a Pleistocene fan of the Kutai basin, subsurface offshore Indonesia; 5) the modern Golo system, offshore east Corsica, France; and 6) a shallow subsurface lobe complex , offshore Nigeria. These six systems have significantly different source-to-sink configurations (shelf dimension and slope topography), sediment supply characteristics (available grain size range and supply rate), tectonic settings, (palaeo) latitude, and delivery systems. Despite these differences, lobe deposits share similar geometric and dimensional characteristics. Lobes are grouped into two distinct populations of geometries that can be related to basin floor topography. The first population corresponds to areally extensive but thin lobes (average width 14 km × length 35 km × thickness 12 m) that were deposited onto low relief basin floor areas. Examples of such systems include the Tanqua Karoo, the Amazon, and the Zaïre systems. The second population corresponds to areally smaller but thicker lobes (average width 5 km × length 8 km × thickness 30 m) that were deposited into settings with higher amplitude of relief, like in the Corsican trough, the Kutai basin, and offshore Nigeria. The two populations of lobe types, however, share similar volumes (a narrow range around 1 or 2 km 3), which suggests that there is a control to the total volume of sediment that individual lobes can reach before they shift to a new locus of deposition. This indicates that the extrinsic processes control the number of lobes deposited per unit time rather than their dimensions. Two alternative hypotheses are presented to explain the similarities in lobe volumes calculated from the six very different systems. The first states that the wide range of starting flow volume and grain size across all systems enters the basin floor as a narrow range due to slope 'filtering' via more overspill and intra-channel deposition in larger systems. The second hypothesis is a result of the gradual decrease in downstream gradient from the distributive channel base to the lobe top during lobe growth. This is not sustainable as the channel will start to aggrade, and when a steeper lateral gradient is present, an avulsion will occur to an adjacent depositional low, which will be used for flows to fill and build a new lobe. This analysis of submarine lobe volumes indicates that the basin floor topography influences lobe geometry, but the fact that lobe volumes have a narrow range indicates a strong influence of intrinsic processes.

Intrinsic controls on the range of volumes, morphologies, and dimensions of submarine lobes

USGS Publications Warehouse

Prelat, A.; Covault, J.A.; Hodgson, D.M.; Fildani, A.; Flint, S.S.

2010-01-01

Submarine lobe dimensions from six different systems are compared: 1) the exhumed Permian Fan 3 lobe complex of the Tanqua Karoo, South Africa; 2) the modern Amazon fan channel-mouth lobe complex, offshore Brazil; 3) a portion of the modern distal Za??re fan, offshore Angola/Congo; 4) a Pleistocene fan of the Kutai basin, subsurface offshore Indonesia; 5) the modern Golo system, offshore east Corsica, France; and 6) a shallow subsurface lobe complex , offshore Nigeria. These six systems have significantly different source-to-sink configurations (shelf dimension and slope topography), sediment supply characteristics (available grain size range and supply rate), tectonic settings, (palaeo) latitude, and delivery systems. Despite these differences, lobe deposits share similar geometric and dimensional characteristics. Lobes are grouped into two distinct populations of geometries that can be related to basin floor topography. The first population corresponds to areally extensive but thin lobes (average width 14km??length 35km??thickness 12m) that were deposited onto low relief basin floor areas. Examples of such systems include the Tanqua Karoo, the Amazon, and the Za??re systems. The second population corresponds to areally smaller but thicker lobes (average width 5km??length 8km??thickness 30m) that were deposited into settings with higher amplitude of relief, like in the Corsican trough, the Kutai basin, and offshore Nigeria. The two populations of lobe types, however, share similar volumes (a narrow range around 1 or 2km3), which suggests that there is a control to the total volume of sediment that individual lobes can reach before they shift to a new locus of deposition. This indicates that the extrinsic processes control the number of lobes deposited per unit time rather than their dimensions. Two alternative hypotheses are presented to explain the similarities in lobe volumes calculated from the six very different systems. The first states that the wide range of starting flow volume and grain size across all systems enters the basin floor as a narrow range due to slope 'filtering' via more overspill and intra-channel deposition in larger systems. The second hypothesis is a result of the gradual decrease in downstream gradient from the distributive channel base to the lobe top during lobe growth. This is not sustainable as the channel will start to aggrade, and when a steeper lateral gradient is present, an avulsion will occur to an adjacent depositional low, which will be used for flows to fill and build a new lobe. This analysis of submarine lobe volumes indicates that the basin floor topography influences lobe geometry, but the fact that lobe volumes have a narrow range indicates a strong influence of intrinsic processes. ?? 2010 Elsevier B.V.

Explaining linkages (and lack of) between riparian vegetation biodiversity and geomorphic complexity in restored streams of northern Sweden

NASA Astrophysics Data System (ADS)

Polvi, Lina; Maher Hasselquist, Eliza; Nilsson, Christer

2014-05-01

Ecological theory suggests that species richness and habitat heterogeneity are positively correlated; therefore stream restoration often relies on increasing geomorphic complexity to promote biodiversity. However, past studies have failed to demonstrate a link between post-restoration biodiversity and geomorphic complexity. These studies have usually relied on only one metric for quantifying complexity, rather than a holistic metric for complexity that represents several aspects of the channel morphology, and have based their observations in catchments with widespread land-use impacts. We use a geomorphic complexity gradient based on five geomorphic aspects (longitudinal, cross-sectional, planform, sediment texture, and instream wood) to determine whether streams with higher levels of complexity also have greater riparian vegetation biodiversity. We also compare biodiversity values with the potential complexity of reaches based on the large-scale controls of valley and channel gradient and the presence of large glacial legacy sediment (boulders). We focus on tributary channels in boreal forests of northern Sweden, where stream modification associated with log-floating from the 1850s to the 1960s created highly simplified channels. Driven by concerns for fish, restoration began in the 1970s by returning large cobbles and boulders into the main channel from the channel edge, and evolved into 'demonstration restoration,' placing very large boulders and trees into the channel, reopening side channels, and constructing fish spawning areas. We evaluate 22 reaches along tributaries of the Vindel River in northern Sweden with four restoration statuses: channelized, restored, demonstration restored, and unimpacted. Detailed morphologic, sediment, and instream wood data allow calculation of 29 metrics of geomorphic complexity, from which a complexity gradient was identified using multivariate statistics. The percent cover of riparian vegetation was identified in 0.5 x 0.5 m plots at three elevations above the low water stage (0, 40, and 80 cm) along five transects; additionally, we determined which species were present within the entire riparian zone (60 m long reach, up to 80 cm elevation). Three metrics of biodiversity were calculated on the plot level (richness, Shannon's diversity index, and evenness); only richness could be examined at the reach scale. There are significant relationships between riparian vegetation biodiversity and the overall complexity gradient at the medium elevation and, based on some metrics, at the low elevation. However, these relationships are not fully explanatory or always linear, explaining up to ~40% of the variability and often being logarithmic. We conclude that reach-scale restoration of increasing complexity in a catchment without significant land-use impacts can have positive effects on biodiversity. However, there are several limiting factors in addition to channel complexity that affect the recovery of riparian zones after restoration: the potential complexity of a reach based on large-scale controls, time since restoration—which is a disturbance in itself, buffer distance to timber harvesting, distance and connectivity to colonist sources, and upland species (e.g., spruce trees) that have managed to colonize when the riparian zone was separated from the channel.

Size-dependent axial instability of microtubules surrounded by cytoplasm of a living cell based on nonlocal strain gradient elasticity theory.

PubMed

Sahmani, S; Aghdam, M M

2017-06-07

Microtubules including tubulin heterodimers arranging in a parallel shape of cylindrical hollow plays an important role in the mechanical stiffness of a living cell. In the present study, the nonlocal strain gradient theory of elasticity including simultaneously the both nonlocality and strain gradient size dependency is put to use within the framework of a refined orthotropic shell theory with hyperbolic distribution of shear deformation to analyze the size-dependent buckling and postbuckling characteristics of microtubules embedded in cytoplasm under axial compressive load. The non-classical governing differential equations are deduced via boundary layer theory of shell buckling incorporating the nonlinear prebuckling deformation and microtubule-cytoplasm interaction in the living cell environment. Finally, with the aid of a two-stepped perturbation solution methodology, the explicit analytical expressions for nonlocal strain gradient stability paths of axially loaded microtubules are achieved. It is illustrated that by taking the nonlocal size effect into consideration, the critical buckling load of microtubule and its maximum deflection associated with the minimum postbuckling load decreases, while the strain gradient size dependency causes to increase them. Copyright © 2017 Elsevier Ltd. All rights reserved.

Size exclusion chromatography-gradients, an alternative approach to polymer gradient chromatography: 2. Separation of poly(meth)acrylates using a size exclusion chromatography-solvent/non-solvent gradient.

PubMed

Schollenberger, Martin; Radke, Wolfgang

2011-10-28

A gradient ranging from methanol to tetrahydrofuran (THF) was applied to a series of poly(methyl methacrylate) (PMMA) standards, using the recently developed concept of SEC-gradients. Contrasting to conventional gradients the samples eluted before the solvent, i.e. within the elution range typical for separations by SEC, however, the high molar mass PMMAs were retarded as compared to experiments on the same column using pure THF as the eluent. The molar mass dependence on retention volume showed a complex behaviour with a nearly molar mass independent elution for high molar masses. This molar mass dependence was explained in terms of solubility and size exclusion effects. The solubility based SEC-gradient was proven to be useful to separate PMMA and poly(n-butyl crylate) (PnBuA) from a poly(t-butyl crylate) (PtBuA) sample. These samples could be separated neither by SEC in THF, due to their very similar hydrodynamic volumes, nor by an SEC-gradient at adsorbing conditions, due to a too low selectivity. The example shows that SEC-gradients can be applied not only in adsorption/desorption mode, but also in precipitation/dissolution mode without risking blocking capillaries or breakthrough peaks. Thus, the new approach is a valuable alternative to conventional gradient chromatography. Copyright © 2011 Elsevier B.V. All rights reserved.

Role of a texture gradient in the perception of relative size.

PubMed

Tozawa, Junko

2010-01-01

Two theories regarding the role of a texture gradient in the perception of the relative size of objects are compared. Relational theory states that relative size is directly specified by the projective ratio of the numbers of texture elements spanned by objects. Distance calibration theory assumes that relative size is a product of visual angle and distance, once the distance is specified by the texture. Experiment 1 involved three variables: background (no texture, texture gradient patterns), the ratio of heights of the comparison stimulus to a standard (three levels), and angular vertical separation of the standard stimulus below the horizon (two levels). The effect of the retinal length of the comparison stimulus was examined in experiment 2. In both experiments, participants judged both the apparent size and distance of a comparison stimulus relative to a standard stimulus. Results suggest that the cues selected by observers to judge relative size were to some degree different from those used to judge relative distance. Relative size was strongly affected by a texture gradient and the retinal length of a comparison stimulus whereas relative distance perception was affected by relative height. When dominant cues that specify size are different from those which specify distance, relational theory might provide a better account of relative size perception than distance calibration theory.

Gating connexin 43 channels reconstituted in lipid vesicles by mitogen-activated protein kinase phosphorylation.

PubMed

Kim, D Y; Kam, Y; Koo, S K; Joe, C O

1999-02-26

The regulation of gap junctional permeability by phosphorylation was examined in a model system in which connexin 43 (Cx43) gap junction hemichannels were reconstituted in lipid vesicles. Cx43 was immunoaffinity-purified from rat brain, and Cx43 channels were reconstituted into unilamellar phospholipid liposomes. The activities of the reconstituted channels were measured by monitoring liposome permeability. Liposomes containing the Cx43 protein were fractionated on the basis of permeability to sucrose using sedimentation in an iso-osmolar density gradient. The gradient allowed separation of the sucrose-permeable and -impermeable liposomes. Liposomes that were permeable to sucrose were also permeable to the communicating dye molecule lucifer yellow. Permeability, and therefore activity of the reconstituted Cx43 channels, were directly dependent on the state of Cx43 phosphorylation. The permeability of liposomes containing Cx43 channels was increased by treatment of liposomes with calf intestinal phosphatase. Moreover, liposomes formed with Cx43 that had been dephosphorylated by calf intestinal phosphatase treatment showed increased permeability to sucrose. The role of phosphorylation in the gating mechanism of Cx43 channels was supported further by the observation that phosphorylation of Cx43 by mitogen-activated protein kinase reversibly reduced the permeability of liposomes containing dephosphorylated Cx43. Our results show a direct correlation between gap junctional permeability and the phosphorylation state of Cx43.

Geometric pumping in autophoretic channels.

PubMed

Michelin, Sébastien; Montenegro-Johnson, Thomas D; De Canio, Gabriele; Lobato-Dauzier, Nicolas; Lauga, Eric

2015-08-07

Many microfluidic devices use macroscopic pressure differentials to overcome viscous friction and generate flows in microchannels. In this work, we investigate how the chemical and geometric properties of the channel walls can drive a net flow by exploiting the autophoretic slip flows induced along active walls by local concentration gradients of a solute species. We show that chemical patterning of the wall is not required to generate and control a net flux within the channel, rather channel geometry alone is sufficient. Using numerical simulations, we determine how geometric characteristics of the wall influence channel flow rate, and confirm our results analytically in the asymptotic limit of lubrication theory.

Image defog algorithm based on open close filter and gradient domain recursive bilateral filter

NASA Astrophysics Data System (ADS)

Liu, Daqian; Liu, Wanjun; Zhao, Qingguo; Fei, Bowen

2017-11-01

To solve the problems of fuzzy details, color distortion, low brightness of the image obtained by the dark channel prior defog algorithm, an image defog algorithm based on open close filter and gradient domain recursive bilateral filter, referred to as OCRBF, was put forward. The algorithm named OCRBF firstly makes use of weighted quad tree to obtain more accurate the global atmospheric value, then exploits multiple-structure element morphological open and close filter towards the minimum channel map to obtain a rough scattering map by dark channel prior, makes use of variogram to correct the transmittance map,and uses gradient domain recursive bilateral filter for the smooth operation, finally gets recovery images by image degradation model, and makes contrast adjustment to get bright, clear and no fog image. A large number of experimental results show that the proposed defog method in this paper can be good to remove the fog , recover color and definition of the fog image containing close range image, image perspective, the image including the bright areas very well, compared with other image defog algorithms,obtain more clear and natural fog free images with details of higher visibility, what's more, the relationship between the time complexity of SIDA algorithm and the number of image pixels is a linear correlation.

Developmental profile of SK2 channel expression and function in CA1 neurons

PubMed Central

Ballesteros-Merino, Carmen; Lin, Mike; Wu, Wendy W.; Ferrandiz-Huertas, Clotilde; Cabañero, María J.; Watanabe, Masahiko; Fukazawa, Yugo; Shigemoto, Ryuichi; Maylie, James; Adelman, John P.; Luján, Rafael

2012-01-01

We investigated the temporal and spatial expression of SK2 in the developing mouse hippocampus using molecular and biochemical techniques, quantitative immunogold electron microscopy and electrophysiology. The mRNA encoding SK2 was expressed in the developing and adult hippocampus. Western blotting and immunohistochemistry showed that SK2 protein increased with age. This was accompanied by a shift in subcellular localization. Early in development (P5), SK2 was predominantly localized to the endoplasmic reticulum in the pyramidal cell layer. But by P30 SK2 was almost exclusively expressed in the dendrites and spines. The level of SK2 at the postsynaptic density (PSD) also increased during development. In the adult, SK2 expression on the spine plasma membrane showed a proximal-to-distal gradient. Consistent with this redistribution and gradient of SK2, the selective SK channel blocker apamin increased evoked excitatory postsynaptic potentials (EPSPs) only in CA1 pyramidal neurons from mice older than P15. However, the effect of apamin on EPSPs was not different between synapses in proximal or distal stratum radiatum or stratum lacunosum-moleculare in adult. These results show a developmental increase and gradient in SK2-containing channel surface expression that underlie their influence on neurotransmission, and that may contribute to increased memory acquisition during early development. PMID:22072564

Laser beam micro-milling of nickel alloy: dimensional variations and RSM optimization of laser parameters

NASA Astrophysics Data System (ADS)

Ahmed, Naveed; Alahmari, Abdulrahman M.; Darwish, Saied; Naveed, Madiha

2016-12-01

Micro-channels are considered as the integral part of several engineering devices such as micro-channel heat exchangers, micro-coolers, micro-pulsating heat pipes and micro-channels used in gas turbine blades for aerospace applications. In such applications, a fluid flow is required to pass through certain micro-passages such as micro-grooves and micro-channels. The fluid flow characteristics (flow rate, turbulence, pressure drop and fluid dynamics) are mainly established based on the size and accuracy of micro-passages. Variations (oversizing and undersizing) in micro-passage's geometry directly affect the fluid flow characteristics. In this study, the micro-channels of several sizes are fabricated in well-known aerospace nickel alloy (Inconel 718) through laser beam micro-milling. The variations in geometrical characteristics of different-sized micro-channels are studied under the influences of different parameters of Nd:YAG laser. In order to have a minimum variation in the machined geometries of each size of micro-channel, the multi-objective optimization of laser parameters has been carried out utilizing the response surface methodology approach. The objective was set to achieve the targeted top widths and depths of micro-channels with minimum degree of taperness associated with the micro-channel's sidewalls. The optimized sets of laser parameters proposed for each size of micro-channel can be used to fabricate the micro-channels in Inconel 718 with minimum amount of geometrical variations.

A Galilean and tensorial invariant k-epsilon model for near wall turbulence

NASA Technical Reports Server (NTRS)

Yang, Z.; Shih, T. H.

1993-01-01

A k-epsilon model is proposed for wall bounded turbulent flows. In this model, the eddy viscosity is characterized by a turbulent velocity scale and a turbulent time scale. The time scale is bounded from below by the Kolmogorov time scale. The dissipation rate equation is reformulated using this time scale and no singularity exists at the wall. A new parameter R = k/S(nu) is introduced to characterize the damping function in the eddy viscosity. This parameter is determined by local properties of both the mean and the turbulent flow fields and is free from any geometry parameter. The proposed model is then Galilean and tensorial invariant. The model constants used are the same as in the high Reynolds number Standard k-epsilon Model. Thus, the proposed model will also be suitable for flows far from the wall. Turbulent channel flows and turbulent boundary layer flows with and without pressure gradients are calculated. Comparisons with the data from direct numerical simulations and experiments show that the model predictions are excellent for turbulent channel flows and turbulent boundary layers with favorable pressure gradients, good for turbulent boundary layers with zero pressure gradients, and fair for turbulent boundary layer with adverse pressure gradients.

Mapping Spatial Distributions of Stream Power and Channel Change along a Gravel-Bed River in Northern Yellowstone

NASA Astrophysics Data System (ADS)

Lea, D. M.; Legleiter, C. J.

2014-12-01

Stream power represents the rate of energy expenditure along a river and can be calculated using topographic data acquired via remote sensing. This study used remotely sensed data and field measurements to quantitatively relate temporal changes in the form of Soda Butte Creek, a gravel-bed river in northeastern Yellowstone National Park, to stream power gradients along an 8 km reach. Aerial photographs from 1994-2012 and cross-section surveys were used to assess lateral channel mobility and develop a morphologic sediment budget for quantifying net sediment flux for a series of budget cells. A drainage area-to-discharge relationship and digital elevation model (DEM) developed from LiDAR data were used to obtain the discharge and slope values, respectively, needed to calculate stream power. Local and lagged relationships between mean stream power gradient at median peak discharge and volumes of erosion, deposition, and net sediment flux were quantified via spatial cross-correlation analyses. Similarly, autocorrelations of locational probabilities and sediment fluxes were used to examine spatial patterns of channel mobility and sediment transfer. Energy expended above critical stream power was calculated for each time period to relate the magnitude and duration of peak flows to the total volume of sediment eroded or deposited during each time increment. Our results indicated a lack of strong correlation between stream power gradients and sediment flux, which we attributed to the geomorphic complexity of the Soda Butte Creek watershed and the inability of our relatively simple statistical approach to link sediment dynamics expressed at a sub-budget cell scale to larger-scale driving forces such as stream power gradients. Future studies should compare the moderate spatial resolution techniques used in this study to very-high resolution data acquired from new fluvial remote sensing technologies to better understand the amount of error associated with stream power, sediment transport, and channel change calculated from historical datasets.

Transport of microspheres and indigenous bacteria through a sandy aquifer: Results of natural- and forced-gradient tracer experiments

USGS Publications Warehouse

Harvey, R.W.; George, L.H.; Smith, R.L.; LeBlanc, D.R.

1989-01-01

Transport of indigenous bacteria through sandy aquifer sediments was investigated in forced- and natural-gradient tracer teste. A diverse population of bacteria was collected and concentrated from groundwater at the site, stained with a DNA-specific fluorochrome, and injected back into the aquifer. Included with the injectate were a conservative tracer (Br- or Cl-) and bacteria-sized (0.2-1.3-??m) microspheres having carboxylated, carbonyl, or neutral surfaces. Transport of stained bacteria and all types and size classes of microspheres was evident. In the natural-gradient test, both surface characteristics and size of microspheres affected attenuation. Surface characteristics had the greatest effect upon retardation. Peak break-through of DAPI-stained bacteria (forced-gradient experiment) occurred well in advance of bromide at the more distal sampler. Transport behavior of bacteria was substantially different from that of carboxylated microspheres of comparable size. ?? 1988 American Chemical Society.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, Young Jin

The PowerPoint presentation focused on research goals, specific information about the atomic magnetometer, response and resolution factors of the SERF magnetometer, FC+AM systems, tests of field transfer and resolution on FC, gradient cancellation, testing of AM performance, ideas for a multi-channel AM, including preliminary sensitivity testing, and a description of a 6 channel DAQ system. A few ideas for future work ended the presentation.

Particle-Based Microfluidic Device for Providing High Magnetic Field Gradients

NASA Technical Reports Server (NTRS)

Wong, Tak S. (Inventor); Lin, Adam Y. (Inventor)

2013-01-01

A microfluidic device for manipulating particles in a fluid has a device body that defines a main channel therein, in which the main channel has an inlet and an outlet. The device body further defines a particulate diverting channel therein, the particulate diverting channel being in fluid connection with the main channel between the inlet and the outlet of the main channel and having a particulate outlet. The microfluidic device also has a plurality of microparticles arranged proximate or in the main channel between the inlet of the main channel and the fluid connection of the particulate diverting channel to the main channel. The plurality of microparticles each comprises a material in a composition thereof having a magnetic susceptibility suitable to cause concentration of magnetic field lines of an applied magnetic field while in operation. A microfluidic particle-manipulation system has a microfluidic particle-manipulation device and a magnet disposed proximate the microfluidic particle-manipulation device.

Cysteine residues in the nucleotide binding domains regulate the conductance state of CFTR channels.

PubMed Central

Harrington, Melissa A; Kopito, Ron R

2002-01-01

Gating of cystic fibrosis transmembrane conductance regulator (CFTR) channels requires intermolecular or interdomain interactions, but the exact nature and physiological significance of those interactions remains uncertain. Subconductance states of the channel may result from alterations in interactions among domains, and studying mutant channels enriched for a single conductance type may elucidate those interactions. Analysis of CFTR channels in inside-out patches revealed that mutation of cysteine residues in NBD1 and NBD2 affects the frequency of channel opening to the full-size versus a 3-pS subconductance. Mutating cysteines in NBD1 resulted in channels that open almost exclusively to the 3-pS subconductance, while mutations of cysteines in NBD2 decreased the frequency of subconductance openings. Wild-type channels open to both size conductances and make fast transitions between them within a single open burst. Full-size and subconductance openings of both mutant and wild-type channels are similarly activated by ATP and phosphorylation. However, the different size conductances open very differently in the presence of a nonhydrolyzable ATP analog, with subconductance openings significantly shortened by ATPgammaS, while full-size channels are locked open. In wild-type channels, reducing conditions increase the frequency and decrease the open time of subconductance channels, while oxidizing conditions decrease the frequency of subconductance openings. In contrast, in the cysteine mutants studied, altering redox potential has little effect on gating of the subconductance. PMID:11867445

The problem of predicting the size distribution of sediment supplied by hillslopes to rivers

NASA Astrophysics Data System (ADS)

Sklar, Leonard S.; Riebe, Clifford S.; Marshall, Jill A.; Genetti, Jennifer; Leclere, Shirin; Lukens, Claire L.; Merces, Viviane

2017-01-01

Sediments link hillslopes to river channels. The size of sediments entering channels is a key control on river morphodynamics across a range of scales, from channel response to human land use to landscape response to changes in tectonic and climatic forcing. However, very little is known about what controls the size distribution of particles eroded from bedrock on hillslopes, and how particle sizes evolve before sediments are delivered to channels. Here we take the first steps toward building a geomorphic transport law to predict the size distribution of particles produced on hillslopes and supplied to channels. We begin by identifying independent variables that can be used to quantify the influence of five key boundary conditions: lithology, climate, life, erosion rate, and topography, which together determine the suite of geomorphic processes that produce and transport sediments on hillslopes. We then consider the physical and chemical mechanisms that determine the initial size distribution of rock fragments supplied to the hillslope weathering system, and the duration and intensity of weathering experienced by particles on their journey from bedrock to the channel. We propose a simple modeling framework with two components. First, the initial rock fragment sizes are set by the distribution of spacing between fractures in unweathered rock, which is influenced by stresses encountered by rock during exhumation and by rock resistance to fracture propagation. That initial size distribution is then transformed by a weathering function that captures the influence of climate and mineralogy on chemical weathering potential, and the influence of erosion rate and soil depth on residence time and the extent of particle size reduction. Model applications illustrate how spatial variation in weathering regime can lead to bimodal size distributions and downstream fining of channel sediment by down-valley fining of hillslope sediment supply, two examples of hillslope control on river sediment size. Overall, this work highlights the rich opportunities for future research into the controls on the size of sediments produced on hillslopes and delivered to channels.

The Echinoid Mitotic Gradient: Effect of Cell Size on the Micromere Cleavage Cycle

PubMed Central

Langelan Duncan, Rosalie E.; Whiteley, Arthur H.

2012-01-01

SUMMARY Like other euechinoids, the fertilized eggs of the sand dollar Dendraster excentricus proceed through cleavages that produce a pattern of macromeres, mesomeres, and micromeres at the 4th division. The 8 cells of the macro-mesomere lineage proceed through 6 additional cleavages before hatching. At the fifth overall division, the 4 micromeres produce a lineage of large micromeres that will divide 3 additional times, and a lineage of small micromeres that will divide once more before hatching. Irrespective of lineage, the length of the cell cycles is closely related to the size of the blastomere; cells of the same size have the same cell cycle time. A consequence is that at the fourth cleavage, there is a gradient of mitotic activity from the fastest dividers at the animal pole and the slowest cleacing micromeres at the vegetal pole. By the time of hatching, which is the 10th division of meso-macromeres, all cells are the same small size, the metachronic pattern of division gives way to asynchrony, and the mitotic gradient along the polar axis is lost. Experimental pre-exposure to sodium dodecyl sulfate (SDS), however, blocks the appearance of the gradients in cell size, the mitotic gradient, and the differential in cell cycle times. It is proposed that the mitotic gradients, cell cycle times, and attainment of a state of asynchrony are functions of cell size. Developmental consequences of the transition are large, and include coordinated activation of transcriptions, synthesis of new patterns of proteins, alterations of metabolism, and onset of morphogenesis. PMID:22006441

Size-frequency distributions along a latitudinal gradient in Middle Permian fusulinoideans.

PubMed

Zhang, Yichun; Payne, Jonathan L

2012-01-01

Geographic gradients in body size within and among living species are commonly used to identify controls on the long-term evolution of organism size. However, the persistence of these gradients over evolutionary time remains largely unknown because ancient biogeographic variation in organism size is poorly documented. Middle Permian fusulinoidean foraminifera are ideal for investigating the temporal persistence of geographic gradients in organism size because they were diverse and abundant along a broad range of paleo-latitudes during this interval (~275-260 million years ago). In this study, we determined the sizes of Middle Permian fusulinoidean fossils from three different paleo-latitudinal zones in order to examine the relationship between the size of foraminifers and regional environment. We recovered the following results: keriothecal fusulinoideans are substantially larger than nonkeriothecal fusulinoideans; fusulinoideans from the equatorial zone are typically larger than those from the north and south transitional zones; neoschwagerinid specimens within a single species are generally larger in the equatorial zone than those in both transitional zones; and the nonkeriothecal fusulinoideans Staffellidae and Schubertellidae have smaller size in the north transitional zone. Fusulinoidean foraminifers differ from most other marine taxa in exhibiting larger sizes closer to the equator, contrary to Bergmann's rule. Meridional variation in seasonality, water temperature, nutrient availability, and carbonate saturation level are all likely to have favored or enabled larger sizes in equatorial regions. Temporal variation in atmospheric oxygen concentrations have been shown to account for temporal variation in fusulinoidean size during Carboniferous and Permian time, but oxygen availability appears unlikely to explain biogeographic variation in fusulinoidean sizes, because dissolved oxygen concentrations in seawater typically increase away from the equator due to declining seawater temperatures. Consequently, our findings highlight the fact that spatial gradients in organism size are not always controlled by the same factors that govern temporal trends within the same clade.

Size-Frequency Distributions along a Latitudinal Gradient in Middle Permian Fusulinoideans

PubMed Central

Zhang, Yichun; Payne, Jonathan L.

2012-01-01

Geographic gradients in body size within and among living species are commonly used to identify controls on the long-term evolution of organism size. However, the persistence of these gradients over evolutionary time remains largely unknown because ancient biogeographic variation in organism size is poorly documented. Middle Permian fusulinoidean foraminifera are ideal for investigating the temporal persistence of geographic gradients in organism size because they were diverse and abundant along a broad range of paleo-latitudes during this interval (∼275–260 million years ago). In this study, we determined the sizes of Middle Permian fusulinoidean fossils from three different paleo-latitudinal zones in order to examine the relationship between the size of foraminifers and regional environment. We recovered the following results: keriothecal fusulinoideans are substantially larger than nonkeriothecal fusulinoideans; fusulinoideans from the equatorial zone are typically larger than those from the north and south transitional zones; neoschwagerinid specimens within a single species are generally larger in the equatorial zone than those in both transitional zones; and the nonkeriothecal fusulinoideans Staffellidae and Schubertellidae have smaller size in the north transitional zone. Fusulinoidean foraminifers differ from most other marine taxa in exhibiting larger sizes closer to the equator, contrary to Bergmann's rule. Meridional variation in seasonality, water temperature, nutrient availability, and carbonate saturation level are all likely to have favored or enabled larger sizes in equatorial regions. Temporal variation in atmospheric oxygen concentrations have been shown to account for temporal variation in fusulinoidean size during Carboniferous and Permian time, but oxygen availability appears unlikely to explain biogeographic variation in fusulinoidean sizes, because dissolved oxygen concentrations in seawater typically increase away from the equator due to declining seawater temperatures. Consequently, our findings highlight the fact that spatial gradients in organism size are not always controlled by the same factors that govern temporal trends within the same clade. PMID:22685590

Nonlinear primary resonance of micro/nano-beams made of nanoporous biomaterials incorporating nonlocality and strain gradient size dependency

NASA Astrophysics Data System (ADS)

Sahmani, S.; Aghdam, M. M.

2018-03-01

A wide range of biological applications such as drug delivery, biosensors and hemodialysis can be provided by nanoporous biomaterials due to their uniform pore size as well as considerable pore density. In the current study, the size dependency in the nonlinear primary resonance of micro/nano-beams made of nanoporous biomaterials is anticipated. To accomplish this end, a refined truncated cube is introduced to model the lattice structure of nanoporous biomaterial. Accordingly, analytical expressions for the mechanical properties of material are derived as functions of pore size. After that, based upon a nonlocal strain gradient beam model, the size-dependent nonlinear Duffing type equation of motion is constructed. The Galerkin technique together with the multiple time-scales method is employed to obtain the nonlocal strain gradient frequency-response and amplitude-response related to the nonlinear primary resonance of a micro/nano-beam made of the nanoporous biomaterial with different pore sizes. It is indicated that the nonlocality causes to decrease the response amplitudes associated with the both bifurcation points of the jump phenomenon, while the strain gradient size dependency causes to increase them. Also, it is found that increasing the pore size leads to enhance the nonlinearity, so the maximum deflection of response occurs at higher excitation frequency.

Current and historical composition and size structure of upland forests across a soil gradient in north Mississippi

Treesearch

Sherry B. Surrette; Steven M. Aquilani; J. Stephen Brewer

2008-01-01

Comparisons of current and historical tree species composition and size structure along natural productivity gradients are useful for inferring effects of disturbance regimes and productivity on patterns of succession.

Directed transport by surface chemical potential gradients for enhancing analyte collection in nanoscale sensors.

PubMed

Sitt, Amit; Hess, Henry

2015-05-13

Nanoscale detectors hold great promise for single molecule detection and the analysis of small volumes of dilute samples. However, the probability of an analyte reaching the nanosensor in a dilute solution is extremely low due to the sensor's small size. Here, we examine the use of a chemical potential gradient along a surface to accelerate analyte capture by nanoscale sensors. Utilizing a simple model for transport induced by surface binding energy gradients, we study the effect of the gradient on the efficiency of collecting nanoparticles and single and double stranded DNA. The results indicate that chemical potential gradients along a surface can lead to an acceleration of analyte capture by several orders of magnitude compared to direct collection from the solution. The improvement in collection is limited to a relatively narrow window of gradient slopes, and its extent strongly depends on the size of the gradient patch. Our model allows the optimization of gradient layouts and sheds light on the fundamental characteristics of chemical potential gradient induced transport.

Barrier island breach evolution: Alongshore transport and bay-ocean pressure gradient interactions

USGS Publications Warehouse

Safak, Ilgar; Warner, John C.; List, Jeffrey

2016-01-01

Physical processes controlling repeated openings and closures of a barrier island breach between a bay and the open ocean are studied using aerial photographs and atmospheric and hydrodynamic observations. The breach site is located on Pea Island along the Outer Banks, separating Pamlico Sound from the Atlantic Ocean. Wind direction was a major control on the pressure gradients between the bay and the ocean to drive flows that initiate or maintain the breach opening. Alongshore sediment flux was found to be a major contributor to breach closure. During the analysis period from 2011 to 2016, three hurricanes had major impacts on the breach. First, Hurricane Irene opened the breach with wind-driven flow from bay to ocean in August 2011. Hurricane Sandy in October 2012 quadrupled the channel width from pressure gradient flows due to water levels that were first higher on the ocean side and then higher on the bay side. The breach closed sometime in Spring 2013, most likely due to an event associated with strong alongshore sediment flux but minimal ocean-bay pressure gradients. Then, in July 2014, Hurricane Arthur briefly opened the breach again from the bay side, in a similar fashion to Irene. In summary, opening and closure of breaches are shown to follow a dynamic and episodic balance between along-channel pressure gradient driven flows and alongshore sediment fluxes.

Dehydration in the lower Antarctic stratosphere in late winter and spring

NASA Technical Reports Server (NTRS)

Kelly, K. K.; Tuck, A. F.; Fahey, D. W.; Proffitt, M. H.; Murphy, D. M.; Jones, R. L.; Mckenna, D. S.; Heidt, L. E.; Ferry, G. V.; Loewenstein, M.

1988-01-01

The history of minimum temperatures at 50 and 70 mb is examined from NMC, UK Met 0 and ECMWF analyses. MSU channel 24 data are similarly inspected. South Pole sonde data are used to calculate saturation humidity mixing ratio as a function of altitude and time throughout 1987. Saturation with respect to ice could be maintained for water mixing ratios of 3.5 ppmv for a period of about 80 days from mid-June to mid-September. Dehydration to mixing ratios of 1 ppmv or less was possible sporadically. Data from the ER-2 flights between 53 S and 72 S are used in conjunction with particle size measurements and air parcel trajectories to demonstrate the dehydration occurring over Antarctica. Water mixing ratios at the latitude of Punta Arenas (53 S), in conjunction with tracer measurements and trajectory analysis, show that at potential temperatures from about 325 to 400 K, the dryness (less than 3 ppmv) had its origin over Antarctica rather than in the tropics. Water mixing ratios within the Antarctic vortex varied from 1.5 to 3.8 ppmv, with a strong isentropic gradient being evident in the region of high potential vorticity gradients.

Dehydration in the lower Antarctic stratosphere during late winter and early spring, 1987

NASA Technical Reports Server (NTRS)

Kelly, K. K.; Tuck, A. F.; Murphy, D. M.; Fahey, D. W.; Proffitt, M. H.; Jones, R. L.; Mckenna, D. S.; Loewenstein, M.; Podolske, J. P.; Strahan, S. E.

1989-01-01

The history of minimum temperatures at 50 and 70 mb is examined from NMC, UK Met O and ECMWF analyses. MSU channel 24 data are similarly inspected. South Pole sonde data are used to calculate saturation humidity mixing ratio as a function of altitude and time throughout 1987. Saturation with respect to ice could be maintained for water mixing ratios of 3.5 ppmv for a period of about 80 days from mid-June to mid-September. Dehydration to mixing ratios of 1 ppmv or less was possible sporadically. Data from the ER-2 flights between 53 S and 72 S are used in conjunction with particle size measurements and air parcel trajectories to demonstrate the dehydration occurring over Antarctica. Water mixing ratios at the latitude of Punta Arens (53 S), in conjunction with tracer measurements and trajectory analysis, show that at potential temperatures from about 325 to 400 K, the dryness (less than 3 ppmv) had its origin over Antarctica rather than in the tropics. Water mixing ratios within the Antarctic vortex varied from 1.5 to 3.8 ppmv, with a strong isentropic gradient being evident in the region of high potential vorticity gradients.

Optofluidic droplet coalescence on a microfluidic chip

NASA Astrophysics Data System (ADS)

Jung, Jin Ho; Lee, Kyung Heon; Lee, Kang Soo; Cho, Hyunjun; Ha, Byung Hang; Destgeer, Ghulam; Sung, Hyung Jin

2013-11-01

Coalescence is the procedure that two or more droplets fuse during contact to form a larger droplet. Optofluidic droplet coalescence on a microfluidic chip was demonstrated with theoretical and experimental approaches. Droplets were produced in a T-junction geometry and their velocities and sizes were adjusted by flow rate. In order to bring them in a direct contact of coalescence, optical gradient force was used to trap the droplets. A theoretical modeling of the coalescence was derived by combining the optical force and drag force on the droplet. The analytical expression of the optical force on a sphere droplet was employed to estimate the trapping efficiency in the ray optics regime. The drag force acting on the droplet was calculated in terms of the fluid velocity, viscosity and the geometrical parameters of a microfluidic channel. The droplet coalescence was conducted in a microfluidic setup equipped with a 1064 CW laser, focusing optics, a syringe pump, a custom-made stage and a sCMOS camera. The droplets were successfully coalesced using the optical gradient force. The experimental data of coalescence were in good agreement with the prediction. This work was supported by the Creative Research Initiatives program (No.2013-003364) of the National Research Foundation of Korea (MSIP).

Relationships of field habitat measurements, visual habitat indices, and land cover to benthic macroinvertebrates in urbanized streams of the Santa Clara Valley, California

USGS Publications Warehouse

Fend, S.V.; Carter, J.L.; Kearns, F.R.

2005-01-01

We evaluated several approaches for measuring natural and anthropogenic habitat characteristics to predict benthic macroinvertebrate assemblages over a range of urban intensity at 85 stream sites in the Santa Clara Valley, California. Land cover was summarized as percentage urban land cover and impervious area within upstream buffers and the upstream subwatersheds. Field measurements characterized water chemistry, channel slope, sediment, and riparian canopy. In . addition to applying the visual-based habitat assessment in U.S. Environmental Protection Agency's rapid bioassessment protocol, we developed a simplified urban habitat assessment index based on turbidity, fine sediment deposition, riparian condition, and channel modification. Natural and anthropogenic habitat variables covaried along longitudinal stream gradients and were highly correlated with elevation. At the scale of the entire watershed, benthic macroinvertebrate measures were equally correlated with variables expressing natural gradients and urbanization effects. When natural gradients were reduced by partitioning sites into ecoregion subsection groupings, habitat variables most highly correlated with macroinvertebrate measures differed between upland and valley floor site groups. Among the valley floor sites, channel slope and physical modification of channel and riparian habitats appeared more important than upstream land cover or water quality in determining macroinvertebrate richness and ordination scores. Among upland sites, effects of upstream reservoir releases on habitat quality appeared important. Rapid habitat evaluation methods appeared to be an effective method for describing habitat features important to benthic macroinvertebrates when adapted for the region and the disturbance of interest. ?? 2005 by the American Fisheries Society.

Active Urbanization and Channel Adjustment in Apple Creek, Appleton, WI

NASA Astrophysics Data System (ADS)

Clark, J. J.

2002-12-01

Headwaters of the Apple Creek watershed have been and continue to be rapidly developed as part of the City of Appleton's long-term growth plan. Concurrent with early development, and prior to development over the past 4 years, two regional stormwater management facilities were constructed. Cross-sectional surveys and core transects were used to determine channel response to urbanization mitigated by stormwater management. The reach immediately downstream of the first pond complex has a narrow, but well established, wooded riparian zone and has not changed in size or shape over the past two years. An engineered reach approximately one mile downstream, however has exhibited widespread bed aggradation. Cross-sectional area decreased an average of 51% over the past four years. Despite the use of sediment and erosion control BMPs, sediment concentrations exceeding 1000 mg/L during base flow are not uncommon downstream of construction sites adjacent to the stream. The artificially widened channel, a reduction in stream gradient, and the backwater effect from downstream ponds caused much of this sediment to remain within the engineered reach. It is estimated that approximately 21,000 Mg of sediment is stored in this mile-long reach. As this sediment migrates downstream, the forebay of the second set of stormwater ponds will begin to fill, reducing storage capacity and thereby limiting its effectiveness in mitigating peak discharges and sequestering nutrients.

Catch of channel catfish with tandem-set hoop nets and gill nets in lentic systems of Nebraska

USGS Publications Warehouse

Richters, Lindsey K.; Pope, Kevin L.

2011-01-01

Twenty-six Nebraska water bodies representing two ecosystem types (small standing waters and large standing waters) were surveyed during 2008 and 2009 with tandem-set hoop nets and experimental gill nets to determine if similar trends existed in catch rates and size structures of channel catfish Ictalurus punctatus captured with these gears. Gear efficiency was assessed as the number of sets (nets) that would be required to capture 100 channel catfish given observed catch per unit effort (CPUE). Efficiency of gill nets was not correlated with efficiency of hoop nets for capturing channel catfish. Small sample sizes prohibited estimation of proportional size distributions in most surveys; in the four surveys for which sample size was sufficient to quantify length-frequency distributions of captured channel catfish, distributions differed between gears. The CPUE of channel catfish did not differ between small and large water bodies for either gear. While catch rates of hoop nets were lower than rates recorded in previous studies, this gear was more efficient than gill nets at capturing channel catfish. However, comparisons of size structure between gears may be problematic.

Channel Evolution Following Avulsion: an Example from the Yellow River Delta

NASA Astrophysics Data System (ADS)

Zheng, S.

2017-12-01

Long-term field observation of morphological adjustments of rivers following avulsions is lacked when studying the evolution of avulsive channel on deltas. Avulsion at the Yellow River Delta (YRD) is frequent with average lifespan of channels of only about a decade. The Qing-shui-gou channel, the recent lobe on the YRD, provides a rare opportunity for investigating channel evolution following artificial avulsion. The reasons for its longer lifespan also needs investigation of the channel evolution. In this study, we comprehensively analyzed the geomorphic adjustment of the channel based on filed survey data during 1976-2014. The evolution of the channel was impacted by anthropogenic activities, including artificial avulsion at the downstream channel reaches in 1996, alteration of runoff and sediment load through Water and Sediment Regulation Scheme (WSRS), construction of levees and dikes. Analysis on channel geometry showed that avulsions in 1976 and in 1996 both caused short-term (1 2 years) erosion at the upstream channel reaches. Following the avulsion in 1976, massive aggradation occurred at the channel reaches at the downstream of the avulsion point. A single-thread channel gradually formed, widened and enlarged as channel bed under-cut on the deposition material. As delta extended seaward and the longitudinal slope decreased with time, aggradation occurred and an alluvial ridge formed. The ratio of lateral slope to the longitudinal slope (i.e. gradient advantage) and the relative super-elevation of the channel were calculated to estimate the possibility of avulsion at the channel in the late 1990. Results showed that the slope ratio was greater than 20 locally and super-elevation near its critical value for avulsion. The fact, that natural avulsion did not occurred despite of high values of gradient advantage and super elevation, may indicate that they are not sufficient conditions for avulsion at highly human-controlled rivers, where channel boundaries are constrained by dikes and bankfull discharge rarely occur. The Qing-shui-gou channel has been eroded and deepened since 2002 when the WSRS was implemented. Although channel erosion rates caused by WSRS decreased with time, the risk of avulsion has been reduced. This may also help explain the relative longer life-span of the Qing-shui-gou channel.

Flow perfusion culture of MC3T3-E1 osteogenic cells on gradient calcium polyphosphate scaffolds with different pore sizes.

PubMed

Chen, Liang; Song, Wei; Markel, David C; Shi, Tong; Muzik, Otto; Matthew, Howard; Ren, Weiping

2016-02-01

Calcium polyphosphate is a biodegradable bone substitute. It remains a challenge to prepare porous calcium polyphosphate with desired gradient porous structures. In this study, a modified one-step gravity sintering method was used to prepare calcium polyphosphate scaffolds with desired-gradient-pore-size distribution. The differences of porous structure, mechanical strength, and degradation rate between gradient and homogenous calcium polyphosphate scaffolds were evaluated by micro-computed tomography, scanning electron microscopy, and mechanical testing. Preosteoblastic MC3T3-E1 cells were seeded onto gradient and homogenous calcium polyphosphate scaffolds and cultured in a flow perfusion bioreactor. The distribution, proliferation, and differentiation of the MC3T3-E1 cells were compared to that of homogenous calcium polyphosphate scaffolds. Though no significant difference of cell proliferation was found between the gradient and the homogenous calcium polyphosphate scaffolds, a much higher cell differentiation and mineralization were observed in the gradient calcium polyphosphate scaffolds than that of the homogenous calcium polyphosphate scaffolds, as manifested by increased alkaline phosphatase activity (p < 0.05). The improved distribution and differentiation of cultured cells within gradient scaffolds were further supported by both (18)F-fluorine micro-positron emission tomography scanning and in vitro tetracycline labeling. We conclude that the calcium polyphosphate scaffold with gradient pore sizes enhances osteogenic cell differentiation as well as mineralization. The in vivo performance of gradient calcium polyphosphate scaffolds warrants further investigation in animal bone defect models. © The Author(s) 2015.

Calculation of in situ acoustic sediment attenuation using off-the-shelf horizontal ADCPs in low concentration settings

USGS Publications Warehouse

Haught, Dan; Venditti, Jeremy G.; Wright, Scott A.

2017-01-01

The use of “off-the-shelf” acoustic Doppler velocity profilers (ADCPs) to estimate suspended sediment concentration and grain-size in rivers requires robust methods to estimate sound attenuation by suspended sediment. Theoretical estimates of sediment attenuation require a priori knowledge of the concentration and grain-size distribution (GSD), making the method impractical to apply in routine monitoring programs. In situ methods use acoustic backscatter profile slope to estimate sediment attenuation, and are a more attractive option. However, the performance of in situ sediment attenuation methods has not been extensively compared to theoretical methods. We used three collocated horizontally mounted ADCPs in the Fraser River at Mission, British Columbia and 298 observations of concentration and GSD along the acoustic beams to calculate theoretical and in situ sediment attenuation. Conversion of acoustic intensity from counts to decibels is influenced by the instrument noise floor, which affects the backscatter profile shape and therefore in situ attenuation. We develop a method that converts counts to decibels to maximize profile length, which is useful in rivers where cross-channel acoustic profile penetration is a fraction of total channel width. Nevertheless, the agreement between theoretical and in situ attenuation is poor at low concentrations because cross-stream gradients in concentration, sediment size or GSD can develop, which affect the backscatter profiles. We establish threshold concentrations below which in situ attenuation is unreliable in Fraser River. Our results call for careful examination of cross-stream changes in suspended sediment characteristics and acoustic profiles across a range of flows before in situ attenuation methods are applied in river monitoring programs.

Maternal Education Gradients in Infant Health in Four South American Countries.

PubMed

Wehby, George L; López-Camelo, Jorge S

2017-11-01

Objective We investigate gradients (i.e. differences) in infant health outcomes by maternal education in Argentina, Brazil, Chile, and Venezuela and explore channels related to father's education, household labor outcomes, and maternal health, fertility, and use of prenatal services and technology. Methods We employ secondary interview and birth record data similarly collected across a network of birth hospitals from the early 1980s through 2011 within the Latin American Collaborative Study of Congenital Anomalies (ECLAMC). Focusing on children without birth defects, we estimate gradients in several infant health outcomes including birth weight, gestational age, and hospital discharge status by maternal education using ordinary least squares regression models adjusting for several demographic factors. To explore channels, we add as covariates father's education, parental occupational activity, maternal health and fertility history, and use of prenatal services and technology and evaluate changes in the coefficient of maternal education. We use the same models for each country sample. Results We find important differences in gradients across countries. We find evidence for educational gradients in preterm birth in three countries but weaker evidence for gradients in fetal growth. The extent to which observed household and maternal factors explain these gradients based on changes in the regression coefficient of maternal education when controlling for these factors as covariates also varies between countries. In contrast, we generally find evidence across all countries that higher maternal education is associated with increased use of prenatal care services and technology. Conclusions Our findings suggest that differences in infant health by maternal education and their underlying mechanisms vary and are not necessarily generalizable across countries. However, the positive association between maternal education and use of prenatal services and technology is more consistent across examined countries.

Synthesis and characterization of polymer layers for control of fluid transport

NASA Astrophysics Data System (ADS)

Vatansever, Fehime

The level of wetting of fiber surface with liquids is an important characteristic of fibrous materials. It is related to fiber surface energy and the structure of the material. Surface energy can be changed by surface modification via the grafting methodologies that have been reported for introducing new and stable functionality to fibrous substrates without changing bulk properties. Present work is dedicated to synthesis and characterization of macromolecular layers grafted to fiber surface in order to achieve directional liquid transport for the modified fabric. Modification technique used here is based on formation of stable polymer layer on fabric surface using "grafting to" technique. Specifically, modification of fabric with wettability gradient for facilitated one way-liquid transport, and pointed modification of yarn-based channels on textile microfluidic device for directional liquid transport are reported here. First, fabric was activated with alkali (NaOH) solution. Second, poly (glycidyl methacrylate) (PGMA) was deposited on fabric as an anchoring layer. Finally, polymers of interest were grafted to surface through the epoxy functionality of PGMA. Effect of polymer grafting on the wicking property of the fabric has been evaluated by vertical wicking technique at the each step of surface modification. The results shows that wicking performance of fabric can be altered by grafting of a thin nanoscale polymeric film. For the facilitated liquid transport, the gradient polymer coating was created using "grafting to" technique and its dependence on the grafting temperature. Wettability gradient from hydrophilic to hydrophobic (change in water contact angle from 0 to 140 degrees on fabric) was achieved by grafting of polystyrene (PS) and polyacrylic acid (PAA) sequentially with concentration gradient. This study proposes that fabric with wettability gradient property can be used to transfer sweat from skin and support moisture management when it is used in a laminated garment structure. For cooling performance evaluation, modified fabrics were tested with surface differential scanning calorimeter, and improved cooling effect was found with the fabric that has wettability gradient. Directional liquid transport can be achieved on amphiphilic fabric. To this end, fabric consisting of PET and PP yarn is fabricated. Activation and PGMA deposition yields an array of highly reactive PET channels that are constrained by hydrophobic PP boundaries. Aqueous solutions are transported in the channels by capillary forces where the direction of the liquid transport is defined by pH-response of the grafted polymers. The system of pH-selective channels in the developed textile based microfluidic chip could find analytical applications and can be used for smart cloth.

Complementarity effects on tree growth are contingent on tree size and climatic conditions across Europe

PubMed Central

Madrigal-González, Jaime; Ruiz-Benito, Paloma; Ratcliffe, Sophia; Calatayud, Joaquín; Kändler, Gerald; Lehtonen, Aleksi; Dahlgren, Jonas; Wirth, Christian; Zavala, Miguel A.

2016-01-01

Neglecting tree size and stand structure dynamics might bias the interpretation of the diversity-productivity relationship in forests. Here we show evidence that complementarity is contingent on tree size across large-scale climatic gradients in Europe. We compiled growth data of the 14 most dominant tree species in 32,628 permanent plots covering boreal, temperate and Mediterranean forest biomes. Niche complementarity is expected to result in significant growth increments of trees surrounded by a larger proportion of functionally dissimilar neighbours. Functional dissimilarity at the tree level was assessed using four functional types: i.e. broad-leaved deciduous, broad-leaved evergreen, needle-leaved deciduous and needle-leaved evergreen. Using Linear Mixed Models we show that, complementarity effects depend on tree size along an energy availability gradient across Europe. Specifically: (i) complementarity effects at low and intermediate positions of the gradient (coldest-temperate areas) were stronger for small than for large trees; (ii) in contrast, at the upper end of the gradient (warmer regions), complementarity is more widespread in larger than smaller trees, which in turn showed negative growth responses to increased functional dissimilarity. Our findings suggest that the outcome of species mixing on stand productivity might critically depend on individual size distribution structure along gradients of environmental variation. PMID:27571971

The unidirectional motion of two heat-conducting liquids in a flat channel

NASA Astrophysics Data System (ADS)

Andreev, V. K.; Cheremnykh, E. N.

2017-10-01

The unidirectional motion of two viscous incompressible liquids in a flat channel is studied. Liquids contact on a flat interface. External boundaries are fixed solid walls, on which the non-stationary temperature gradients are given. The motion is induced by a joint action of thermogravitational and thermocapillary forces and given total non - stationary fluid flow rate in layers. The corresponding initial boundary value problem is conjugate and inverse because the pressure gradients along axes channel have to be determined together with the velocity and temperature field. For this problem the exact stationary solution is found and a priori estimates of non - stationary solutions are obtained. In Laplace images the solution of the non - stationary problem is found in quadratures. It is proved, that the solution converges to a steady regime with time, if the temperature on the walls and the fluid flow rate are stabilized. The numerical calculations for specific liquid media good agree with the theoretical results.

Dependence of Grain Size on the Performance of a Polysilicon Channel TFT for 3D NAND Flash Memory.

PubMed

Kim, Seung-Yoon; Park, Jong Kyung; Hwang, Wan Sik; Lee, Seung-Jun; Lee, Ki-Hong; Pyi, Seung Ho; Cho, Byung Jin

2016-05-01

We investigated the dependence of grain size on the performance of a polycrystalline silicon (poly-Si) channel TFT for application to 3D NAND Flash memory devices. It has been found that the device performance and memory characteristics are strongly affected by the grain size of the poly-Si channel. Higher on-state current, faster program speed, and poor endurance/reliability properties are observed when the poly-Si grain size is large. These are mainly attributed to the different local electric field induced by an oxide valley at the interface between the poly-Si channel and the gate oxide. In addition, the trap density at the gate oxide interface was successfully measured using a charge pumping method by the separation between the gate oxide interface traps and traps at the grain boundaries in the poly-Si channel. The poly-Si channel with larger grain size has lower interface trap density.

Temperature and nitrogen supply interact to determine protein distribution gradients in the wheat grain endosperm.

PubMed

Savill, George P; Michalski, Adam; Powers, Stephen J; Wan, Yongfang; Tosi, Paola; Buchner, Peter; Hawkesford, Malcolm J

2018-05-25

Gradients exist in the distribution of storage proteins in the wheat (Triticum aestivum) endosperm and determine the milling properties and protein recovery rate of the grain. A novel image analysis technique was developed to quantify both the gradients in protein concentration, and the size distribution of protein bodies within the endosperm of wheat plants grown under two different (20 or 28 °C) post-anthesis temperatures, and supplied with a nutrient solution with either high or low nitrogen content. Under all treatment combinations, protein concentration was greater in the endosperm cells closest to the aleurone layer and decreased towards the centre of the two lobes of the grain, i.e. a negative gradient. This was accompanied by a decrease in size of protein bodies from the outer to the inner endosperm layers in all but one of the treatments. Elevated post-anthesis temperature had the effect of increasing the magnitude of the negative gradients in both protein concentration and protein body size, whilst limiting nitrogen supply decreased the gradients.

A dynamic regularized gradient model of the subgrid-scale stress tensor for large-eddy simulation

NASA Astrophysics Data System (ADS)

Vollant, A.; Balarac, G.; Corre, C.

2016-02-01

Large-eddy simulation (LES) solves only the large scales part of turbulent flows by using a scales separation based on a filtering operation. The solution of the filtered Navier-Stokes equations requires then to model the subgrid-scale (SGS) stress tensor to take into account the effect of scales smaller than the filter size. In this work, a new model is proposed for the SGS stress model. The model formulation is based on a regularization procedure of the gradient model to correct its unstable behavior. The model is developed based on a priori tests to improve the accuracy of the modeling for both structural and functional performances, i.e., the model ability to locally approximate the SGS unknown term and to reproduce enough global SGS dissipation, respectively. LES is then performed for a posteriori validation. This work is an extension to the SGS stress tensor of the regularization procedure proposed by Balarac et al. ["A dynamic regularized gradient model of the subgrid-scale scalar flux for large eddy simulations," Phys. Fluids 25(7), 075107 (2013)] to model the SGS scalar flux. A set of dynamic regularized gradient (DRG) models is thus made available for both the momentum and the scalar equations. The second objective of this work is to compare this new set of DRG models with direct numerical simulations (DNS), filtered DNS in the case of classic flows simulated with a pseudo-spectral solver and with the standard set of models based on the dynamic Smagorinsky model. Various flow configurations are considered: decaying homogeneous isotropic turbulence, turbulent plane jet, and turbulent channel flows. These tests demonstrate the stable behavior provided by the regularization procedure, along with substantial improvement for velocity and scalar statistics predictions.

One-dimensional spatial dark soliton-induced channel waveguides in lithium niobate crystal.

PubMed

Zhang, Peng; Ma, Yanghua; Zhao, Jianlin; Yang, Dexing; Xu, Honglai

2006-04-01

The anisotropic dependence of the formation of one-dimensional (1-D) spatial dark solitons on the orientation of intensity gradients in lithium niobate crystal is numerically specified. Based on this, we propose an approach to fabricate channel waveguides by employing 1-D spatial dark solitons. By exposure of two 1-D dark solitons with different orientations, channel waveguides can be created. The structures of the channel waveguides can be tuned by adjustment of the widths of the solitons and/or the angles between the two exposures. A square channel waveguide is experimentally demonstrated in an iron-doped lithium niobate crystal by exposure of two orthogonal 1-D dark solitons in sequence.

Mapping spatial patterns of stream power and channel change along a gravel-bed river in northern Yellowstone

NASA Astrophysics Data System (ADS)

Lea, Devin M.; Legleiter, Carl J.

2016-01-01

Stream power represents the rate of energy expenditure along a river and can be calculated using topographic data acquired via remote sensing or field surveys. This study sought to quantitatively relate temporal changes in the form of Soda Butte Creek, a gravel-bed river in northeastern Yellowstone National Park, to stream power gradients along an 8-km reach. Aerial photographs from 1994 to 2012 and ground-based surveys were used to develop a locational probability map and morphologic sediment budget to assess lateral channel mobility and changes in net sediment flux. A drainage area-to-discharge relationship and DEM developed from LiDAR data were used to obtain the discharge and slope values needed to calculate stream power. Local and lagged relationships between mean stream power gradient at median peak discharge and volumes of erosion, deposition, and net sediment flux were quantified via spatial cross-correlation analyses. Similarly, autocorrelations of locational probabilities and sediment fluxes were used to examine spatial patterns of sediment sources and sinks. Energy expended above critical stream power was calculated for each time period to relate the magnitude and duration of peak flows to the total volumetric change in each time increment. Collectively, we refer to these methods as the stream power gradient (SPG) framework. The results of this study were compromised by methodological limitations of the SPG framework and revealed some complications likely to arise when applying this framework to small, wandering, gravel-bed rivers. Correlations between stream power gradients and sediment flux were generally weak, highlighting the inability of relatively simple statistical approaches to link sub-budget cell-scale sediment dynamics to larger-scale driving forces such as stream power gradients. Improving the moderate spatial resolution techniques used in this study and acquiring very-high resolution data from recently developed methods in fluvial remote sensing could help improve understanding of the spatial organization of stream power, sediment transport, and channel change in dynamic natural rivers.

Analysis of Fluvial Bed Sediments Along the Apalachicola River, Florida through Field Reconnaissance Studies

NASA Astrophysics Data System (ADS)

Passeri, D.; Hagen, S. C.; Daranpob, A.; Smar, D. E.

2011-12-01

River competence is an important parameter in understanding sediment transport in fluvial systems. Competence is defined as the measure of a stream's ability to transport a certain maximum grain size of sediment. Studies have shown that bed sediment particle size in rivers and streams tends to vary spatially along the direction of stream flow. Over a river section several reaches long, variability of sediment particle sizes can be seen, often becoming finer downstream. This phenomenon is attributed to mechanisms such as local control of stream gradient, coarse tributary sediment supply or particle breakdown. Average particle size may also be smaller in tributary sections of rivers due to river morphology. The relationship between river mean velocity and particle size that can be transported has also been explored. The Hjulstrom curve classifies this relationship by relating particle size to velocity, dividing the regions of sedimentation, transportation, and erosion. The curve can also be used to find values such as the critical erosion velocity (the velocity required to transport particles of various sizes in suspension) and settling velocity (the velocity at which particles of a given size become too heavy to be transported and fall out of suspension, consequently causing deposition). The purpose of this research is to explore the principles of river competence through field reconnaissance collection and laboratory analysis of fluvial sediment core samples along the Apalachicola River, FL and its distributaries. Sediment core samples were collected in the wetlands and estuarine regions of the Apalachicola River. Sieve and hydrometer analyses were performed to determine the spatial distribution of particle sizes along the river. An existing high resolution hydrodynamic model of the study domain was used to simulate tides and generate river velocities. The Hjulstrom curve and the generated river velocities were used to define whether sediment was being transported, eroded or deposited at the different locations in the river and its distributaries. Parameters such as critical erosion velocity and settling velocity were also calculated to describe sediment transport along the channel. This research provides a better understanding of the fluvial geomorphic system, particularly sediment transport in channels. It also provides excellent validation data for future sediment transport studies in similar fluvial study domains.

Geomorphic responses to large check-dam removal on a mountain river in Taiwan

NASA Astrophysics Data System (ADS)

Wang, H.; Stark, C. P.; Cook, K. L.; Kuo, W.

2011-12-01

Dam removal has become an important aspect of river restoration in recent years, but studies documenting the physical and ecological response to dam removal are still lacking - particularly in mountain rivers and following major floods. This presentation documents the recent removal of a large dam on a coarse-grained, steep (an order of magnitude greater than on the Marmot) mountain channel in Taiwan. The Chijiawan river, a tributary of the Tachia River draining a 1236 km2 watershed, is the only habitat in Taiwan of the endangered Formosan landlocked salmon. The habitat of this fish has been cut significantly since the 1960s following construction of check dams designed to prevent reservoir sedimentation downstream. The largest and lowermost barrier on Chijiawan creek is the 15m high, "No. 1 Check Dam" built in 1971. Forty years later, in early 2011, the sediment wedge behind the dam had reached an estimated 0.2 million m3 and the dam toe had been scoured about 4m below its foundation, posing a serious risk of dam failure. For these reasons, the Shei-Pa National Park removed the dam in late May 2011. To monitor the response of the river to dam removal, we installed video cameras, time-lapse cameras, stage recorders, and turbidity sensors, conducted surveys of grain size distributions and longitudinal profiles, and carried out repeat photography. Channel changes were greatest immediately following removal as a result of the high stream power, steep energy slope, and unconsolidated alluvial fill behind the dam. Headcut propagation caused immediate removal of the sand-grade sediment and progressive channel widening. One month after dam removal, a minor flood event excavated a big wedge of sediment from the impoundment. Most of the subsequent downstream deposition occurred within 500m of the dam, with alluviation reaching up to 0.5m in places. Two months after dam removal, erosion had propagated 300m upstream into the impounded sediment along a bed profile of gradient at 1.4% at a headcut with a local gradient of 5.1%. The change in grain size was a fining of the sediment at the two downstream sites and a slight coarsening at the upstream site from April 2010 to July 2011. This is likely due to the increase in energy upstream of the dam post-removal, which has transported the fine-grained sediments downstream. As the river adjusts over coming months and years, we anticipate that observations such as these will help generate an important resource for all those concerned with dam removal and river restoration.

On the tidal prism-channel area relations

NASA Astrophysics Data System (ADS)

D'Alpaos, Andrea; Lanzoni, Stefano; Marani, Marco; Rinaldo, Andrea

2010-03-01

We verify the broad applicability of tidal prism cross-sectional area relationships, originally proposed to relate the total water volume entering a lagoon during a characteristic tidal cycle (the tidal prism) to the size of its inlet, to arbitrary sheltered cross sections within a tidal network. We suggest, with reasonable approximation defining a statistical tendency rather than a pointwise equivalence, that the regime of tidal channels may be anywhere related to local landscape-forming prisms embedded in a characteristic spring tide oscillation. The importance of the proposed extension stems from its potential for quantitative predictions of the long-term morphological evolution of whole tidal landforms, in response to forcings affecting tidal prisms. This is the case, in particular, for alterations of relative mean sea levels possibly driven by climate change. Various 1-D and 2-D morphodynamic and hydrodynamic models are employed to evaluate peak flow rates, bottom shear stresses, and the ensuing local tidal prisms. One-dimensional morphodynamic models describing both the longitudinal and cross-sectional evolution of tidal channels are used to verify the validity of the relationship for sheltered sections. Relevant hydrodynamic features determined through accurate 2-D numerical models are compared with those obtained through time-invariant equivalents, defining a mean watershed by an energy landscape from averaged free surface gradients. Empirical evidence gathered within the lagoon of Venice (Italy) supports the proposed extension. We conclude that the geomorphic law relating tidal prisms to channel cross-sectional areas anywhere within a tidal landscape is a valuable tool for studies on long-term tidal geomorphology.

Directional Bleb Formation in Spherical Cells under Temperature Gradient

PubMed Central

Oyama, Kotaro; Arai, Tomomi; Isaka, Akira; Sekiguchi, Taku; Itoh, Hideki; Seto, Yusuke; Miyazaki, Makito; Itabashi, Takeshi; Ohki, Takashi; Suzuki, Madoka; Ishiwata, Shin'ichi

2015-01-01

Living cells sense absolute temperature and temporal changes in temperature using biological thermosensors such as ion channels. Here, we reveal, to our knowledge, a novel mechanism of sensing spatial temperature gradients within single cells. Spherical mitotic cells form directional membrane extensions (polar blebs) under sharp temperature gradients (≥∼0.065°C μm−1; 1.3°C temperature difference within a cell), which are created by local heating with a focused 1455-nm laser beam under an optical microscope. On the other hand, multiple nondirectional blebs are formed under gradual temperature gradients or uniform heating. During heating, the distribution of actomyosin complexes becomes inhomogeneous due to a break in the symmetry of its contractile force, highlighting the role of the actomyosin complex as a sensor of local temperature gradients. PMID:26200871

River restoration strategies in channelized, low-gradient landscapes of West Tennessee, USA

USGS Publications Warehouse

Smith, D.P.; Diehl, T.H.; Turrini-Smith, L. A.; Maas-Baldwin, J.; Croyle, Z.

2009-01-01

West Tennessee has a complex history of watershed disturbance, including agricultural erosion, channelization, accelerated valley sedimentation, and the removal and reestablishment of beaver. Watershed management has evolved from fl oodplain drainage via pervasive channelization to include local drainage canal maintenance and local river restoration. Many unmaintained canals are undergoing excessive aggradation and complex channel evolution driven by upland erosion and low valley gradient. The locus of aggradation in fully occluded canals (valley plugs) moves up-valley as sediment continues to accumulate in the backwater behind the plug. Valley plugs that cause canal avulsion can lead to redevelopment of meandering channels in less disturbed areas of the fl oodplain, in a process of passive self-restoration. Some valley plugs have brought restored fl oodplain function, reoccupation of extant historic river channels, and formation of a "sediment shadow" that protects downstream reaches from excess sedimentation. Despite the presence of numerous opportunities, there is presently no mechanism for including valley plugs in mitigation projects. In 1997 a survey of 14 reference reach cross sections documented relations between drainage area and bankfull geometry of relatively unmodified streams in West Tennessee. Reassessment of seven of those sites in 2007 showed that one had been dammed by beaver and that two sites could not be analyzed further because of signifi cant vertical or lateral instability. In contrast to other regions of North America, the results suggest that stream channels in this region fl ood more frequently than once each year, and can remain out of banks for several weeks each year. ?? 2009 Geological Society of America.

Small watershed response to porous rock check dams in a semiarid watershed

NASA Astrophysics Data System (ADS)

Nichols, Mary; Polyakov, Viktor; Nearing, Mark

2016-04-01

Rock check dams are used throughout the world as technique for mitigating erosion problems on degraded lands. Increasingly, they are being used in restoration efforts on rangelands in the southwestern US, however, their impact on watershed response and channel morphology is not well quantified. In 2008, 37 porous rock structures were built on two small (4.0 and 3.1 ha) instrumented watersheds on an alluvial fan at the base of the Santa Rita Mountains in southern Arizona, USA. 35 years of historical rainfall and runoff, and sediment data are available to compare with 7 years of data collected after check dam construction. In addition, post construction measurements of channel geometry and longitudinal channel profiles were compared with pre-construction measurements to characterize the impact of check dams on sediment retention and channel morphology. The primary impact of the check dams is was retention of channel sediment and reduction in channel gradient; however response varied between the proximal watersheds with 80% of the check dams on one of the watersheds filled to 100% of their capacity after 7 runoff seasons. In addition, initial impact on precipitation runoff ratios is was not persistent. The contrasting watershed experiences lower sediment yields and only 20% of the check dams on this watershed are were filled to capacity and continue to influence runoff during small events. Within the watersheds the mean gradient of the channel reach immediately upstream of the structures has been reduced by 35% (from 0.061 to 0.039) and 34% on (from 0.071 to 0.047).

Characterizing the transient geomorphic response to base level fall in the northeastern Tibetan Plateau

NASA Astrophysics Data System (ADS)

Zhang, H.; Zhang, P.; Kirby, E.; Pitlick, J.; Anderson, R. S.

2015-12-01

Analyses of hillslope gradient, landscape relief, and channel steepness in the Daxiahe drainage basin along the northeastern margin of the Tibetan Plateau provides evidence of a transient geomorphic response to base level fall along the main stem Yellow River. The upper portions of the watershed are characterized by low-gradient channels and gentle hillslopes and are separated from a steeper, high relief landscape by a series of convex knickzones along channel profiles. Downstream projection of the upper channel profiles implies ~500-600 m of incision, consistent with terrace records of post ~1.7 Ma incision in the Linxia basin. We characterize erosion rates across this transient landscape using both optically-stimulated dating of fluvial terraces and catchment-averaged 10Be concentrations in modern sediment. Both data sets are consistent and suggest erosion/incision rates of ~300 m/Myr below knickpoints and ~50-100 m/Myr above. Field measurements of channel width (n=48) and bankfull discharge (n=9) allow us to determine local scaling relations among channel hydraulic geometry, discharge, and contributing area that we employ to estimate basal shear stress, unit stream power and bedload transport along the main stem of the Daxiahe River. We find a clear downstream increase of incision potential across this transient landscape, consistent with topographic observations and erosion rates. In contrast to recent studies, we find no evidence for adjustment of channel width across the transition from slowly eroding to rapidly eroding portions of the watershed. We hypothesize that this behavior is consistent with detachment-limited models of fluvial incision, despite the presence of significant sediment in channel bed and banks. Our results imply that the controls on hydraulic geometry along actively incising rivers remain incompletely understood.

Preliminary Analysis of SiC BWR Channel Box Performance under Normal Operation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wirth, Brian; Singh, Gyanender P.; Gorton, Jacob

SiC-SiC composites are being considered for applications in the core components, including BWR channel box and fuel rod cladding, of light water reactors to improve accident tolerance. In the extreme nuclear reactor environment, core components like the BWR channel box will be exposed to neutron damage and a corrosive environment. To ensure reliable and safe operation of a SiC channel box, it is important to assess its deformation behavior under in-reactor conditions including the expected neutron flux and temperature distributions. In particular, this work has evaluated the effect of non-uniform dimensional changes caused by spatially varying neutron flux and temperaturesmore » on the deformation behavior of the channel box over the course of one cycle of irradiation. These analyses have been performed using the fuel performance modeling code BISON and the commercial finite element analysis code Abaqus, based on fast flux and temperature boundary conditions have been calculated using the neutronics and thermal-hydraulics codes Serpent2 and COBRA-TF, respectively. The dependence of dimensions and thermophysical properties on fast flux and temperature has been incorporated into the material models. These initial results indicate significant bowing of the channel box with a lateral displacement greater than 6.5mm. The channel box bowing behavior is time dependent, and driven by the temperature dependence of the SiC irradiation-induced swelling and the neutron flux/fluence gradients. The bowing behavior gradually recovers during the course of the operating cycle as the swelling of the SiC-SiC material saturates. However, the bending relaxation due to temperature gradients does not fully recover and residual bending remains after the swelling saturates in the entire channel box.« less

The geomorphic function and characteristics of large woody debris in low gradient rivers, coastal Maine, USA

NASA Astrophysics Data System (ADS)

Magilligan, F. J.; Nislow, K. H.; Fisher, G. B.; Wright, J.; Mackey, G.; Laser, M.

2008-05-01

The role, function, and importance of large woody debris (LWD) in rivers depend strongly on environmental context and land use history. The coastal watersheds of central and northern Maine, northeastern U.S., are characterized by low gradients, moderate topography, and minimal influence of mass wasting processes, along with a history of intensive commercial timber harvest. In spite of the ecological importance of these rivers, which contain the last wild populations of Atlantic salmon ( Salmo salar) in the U.S., we know little about LWD distribution, dynamics, and function in these systems. We conducted a cross-basin analysis in seven coastal Maine watersheds, documenting the size, frequency, volume, position, and orientation of LWD, as well as the association between LWD, pool formation, and sediment storage. In conjunction with these LWD surveys, we conducted extensive riparian vegetation surveys. We observed very low LWD frequencies and volumes across the 60 km of rivers surveyed. Frequency of LWD ≥ 20 cm diameter ranged from 15-50 pieces km - 1 and wood volumes were commonly < 10-20 m 3 km - 1 . Moreover, most of this wood was located in the immediate low-flow channel zone, was oriented parallel to flow, and failed to span the stream channel. As a result, pool formation associated with LWD is generally lacking and < 20% of the wood was associated with sediment storage. Low LWD volumes are consistent with the relatively young riparian stands we observed, with the large majority of trees < 20 cm DBH. These results strongly reflect the legacy of intensive timber harvest and land clearing and suggest that the frequency and distribution of LWD may be considerably less than presettlement and/or future desired conditions.

Energetic constraints, size gradients, and size limits in benthic marine invertebrates.

PubMed

Sebens, Kenneth P

2002-08-01

Populations of marine benthic organisms occupy habitats with a range of physical and biological characteristics. In the intertidal zone, energetic costs increase with temperature and aerial exposure, and prey intake increases with immersion time, generating size gradients with small individuals often found at upper limits of distribution. Wave action can have similar effects, limiting feeding time or success, although certain species benefit from wave dislodgment of their prey; this also results in gradients of size and morphology. The difference between energy intake and metabolic (and/or behavioral) costs can be used to determine an energetic optimal size for individuals in such populations. Comparisons of the energetic optimal size to the maximum predicted size based on mechanical constraints, and the ensuing mortality schedule, provides a mechanism to study and explain organism size gradients in intertidal and subtidal habitats. For species where the energetic optimal size is well below the maximum size that could persist under a certain set of wave/flow conditions, it is probable that energetic constraints dominate. When the opposite is true, populations of small individuals can dominate habitats with strong dislodgment or damage probability. When the maximum size of individuals is far below either energetic optima or mechanical limits, other sources of mortality (e.g., predation) may favor energy allocation to early reproduction rather than to continued growth. Predictions based on optimal size models have been tested for a variety of intertidal and subtidal invertebrates including sea anemones, corals, and octocorals. This paper provides a review of the optimal size concept, and employs a combination of the optimal energetic size model and life history modeling approach to explore energy allocation to growth or reproduction as the optimal size is approached.

The waterfall paradox: How knickpoints disconnect hillslope and channel processes, isolating salmonid populations in ideal habitats

NASA Astrophysics Data System (ADS)

May, Christine; Roering, Josh; Snow, Kyle; Griswold, Kitty; Gresswell, Robert

2017-01-01

Waterfalls create barriers to fish migration, yet hundreds of isolated salmonid populations exist above barriers and have persisted for thousands of years in steep mountainous terrain. Ecological theory indicates that small isolated populations in disturbance-prone landscapes are at greatest risk of extirpation because immigration and recolonization are not possible. On the contrary, many above-barrier populations are currently thriving while their downstream counterparts are dwindling. This quandary led us to explore geomorphic knickpoints as a mechanism for disconnecting hillslope and channel processes by limiting channel incision and decreasing the pace of base-level lowering. Using LiDAR from the Oregon Coast Range, we found gentler channel gradients, wider valleys, lower gradient hillslopes, and less shallow landslide potential in an above-barrier catchment compared to a neighboring catchment devoid of persistent knickpoints. Based on this unique geomorphic template, above-barrier channel networks are less prone to debris flows and other episodic sediment fluxes. These above-barrier catchments also have greater resiliency to flooding, owing to wider valleys with greater floodplain connectivity. Habitat preference models further indicate that salmonid habitat is present in greater quantity and quality in these above-barrier networks. Therefore the paradox of the persistence of small isolated fish populations may be facilitated by a geomorphic mechanism that both limits their connectivity to larger fish populations yet dampens the effect of disturbance by decreasing connections between hillslope and channel processes above geomorphic knickpoints.

Precambrian fluvial deposits: Enigmatic palaeohydrological data from the c. 2 1.9 Ga Waterberg Group, South Africa

NASA Astrophysics Data System (ADS)

Eriksson, Patrick G.; Bumby, Adam J.; Brümer, Jacobus J.; van der Neut, Markus

2006-08-01

Precambrian fluvial systems, lacking the influence of rooted vegetation, probably were characterised by flashy surface runoff, low bank stability, broad channels with abundant bedload, and faster rates of channel migration; consequently, a braided fluvial style is generally accepted. Pre-vegetational braided river systems, active under highly variable palaeoclimatic conditions, may have been more widespread than are modern, ephemeral dry-land braided systems. Aeolian deflation of fine fluvial detritus does not appear to have been prevalent. With the onset of large cratons by the Neoarchaean-Palaeoproterozoic, very large, perennial braided river systems became typical. The c. 2.06-1.88 Ga Waterberg Group, preserved within a Main and a smaller Middelburg basin on the Kaapvaal craton, was deposited largely by alluvial/braided-fluvial and subordinate palaeo-desert environments, within fault-bounded, possibly pull-apart type depositories. Palaeohydrological data obtained from earlier work in the Middelburg basin (Wilgerivier Formation) are compared to such data derived from the correlated Blouberg Formation, situated along the NE margin of the Main basin. Within the preserved Blouberg depository, palaeohydrological parameters estimated from clast size and cross-bed set thickness data, exhibit rational changes in their values, either in a down-palaeocurrent direction, or from inferred basin margin to palaeo-basin centre. In both the Wilgerivier and Blouberg Formations, calculated palaeoslope values (derived from two separate formulae) plot within the gap separating typical alluvial fan gradients from those which characterise rivers (cf. [Blair, T.C., McPherson, J.G., 1994. Alluvial fans and their natural distinction from rivers based on morphology, hydraulic processes, sedimentary processes, and facies assemblages. J. Sediment. Res. A64, 450-489.]). Although it may be argued that such data support possibly unique fluvial styles within the Precambrian, perhaps related to a combination of major global-scale tectono-thermal and atmospheric-palaeoclimatic events, a simpler explanation of these apparently enigmatic palaeoslope values may be pertinent. Of the two possible palaeohydrological formulae for calculating palaeoslope, one provides results close to typical fluvial gradients; the other formula relies on preserved channel-width data. We suggest that the latter will not be reliable due to problematic preservation of original channel-widths within an active braided fluvial system. We thus find no unequivocal support for a unique fluvial style for the Precambrian, beyond that generally accepted for that period and discussed briefly in the first paragraph.

Structural changes of casein micelles in a calcium gradient film.

PubMed

Gebhardt, Ronald; Burghammer, Manfred; Riekel, Christian; Roth, Stephan Volkher; Müller-Buschbaum, Peter

2008-04-09

Calcium gradients are prepared by sequentially filling a micropipette with casein solutions of varying calcium concentration and spreading them on glass slides. The casein film is formed by a solution casting process, which results in a macroscopically rough surface. Microbeam grazing incidence small-angle X-ray scattering (microGISAXS) is used to investigate the lateral size distribution of three main components in casein films: casein micelles, casein mini-micelles, and micellar calcium phosphate. At length scales within the beam size the film surface is flat and detection of size distribution in a macroscopic casein gradient becomes accessible. The model used to analyze the data is based on a set of three log-normal distributed particle sizes. Increasing calcium concentration causes a decrease in casein micelle diameter while the size of casein mini-micelles increases and micellar calcium phosphate particles remain unchanged.

Charge Requirements for Proton Gradient-driven Translocation of Anthrax Toxin*

PubMed Central

Brown, Michael J.; Thoren, Katie L.; Krantz, Bryan A.

2011-01-01

Anthrax lethal toxin is used as a model system to study protein translocation. The toxin is composed of a translocase channel, called protective antigen (PA), and an enzyme, called lethal factor (LF). A proton gradient (ΔpH) can drive LF unfolding and translocation through PA channels; however, the mechanism of ΔpH-mediated force generation, substrate unfolding, and establishment of directionality are poorly understood. One recent hypothesis suggests that the ΔpH may act through changes in the protonation state of residues in the substrate. Here we report the charge requirements of LF's amino-terminal binding domain (LFN) using planar lipid bilayer electrophysiology. We found that acidic residues are required in LFN to utilize a proton gradient for translocation. Constructs lacking negative charges in the unstructured presequence of LFN translocate independently of the ΔpH driving force. Acidic residues markedly increase the rate of ΔpH-driven translocation, and the presequence is optimized in its natural acidic residue content for efficient ΔpH-driven unfolding and translocation. We discuss a ΔpH-driven charge state Brownian ratchet mechanism for translocation, where glutamic and aspartic acid residues in the substrate are the “molecular teeth” of the ratchet. Our Brownian ratchet model includes a mechanism for unfolding and a novel role for positive charges, which we propose chaperone negative charges through the PA channel during ΔpH translocation. PMID:21507946

Characterizing the transient geomorphic response to base-level fall in the northeastern Tibetan Plateau

NASA Astrophysics Data System (ADS)

Zhang, Huiping; Kirby, Eric; Pitlick, John; Anderson, Robert S.; Zhang, Peizhen

2017-02-01

Analysis of hillslope gradient, landscape relief, and channel steepness in the Daxia River basin provides evidence of a transient geomorphic response to base-level fall on the northeastern Tibetan Plateau. Low-gradient channels and gentle hillslopes of the upper watershed are separated from a steeper, high-relief landscape by a series of convex knickzones along channel longitudinal profiles. Downstream projection of the "relict" portions of the profiles implies 800-850 m of incision, consistent with geologic and geomorphic records of post 1.7 Ma incision in the lower watershed. We combine optically stimulated luminescence dating of fluvial terrace deposits to constrain incision rates downstream of knickpoints with catchment-averaged 10Be concentrations in modern sediment to estimate erosion rates in tributary basins both above and below knickpoints. Both sources of data imply landscape lowering rates of 300 m Ma-1 below the knickpoint and 50-100 m Ma-1 above. Field measurements of channel width (n = 48) and calculations of bankfull discharge (n = 9) allow determination of scaling relations among channel hydraulic geometry, discharge, and contributing area that we employ to estimate the patterns of basal shear stress, unit stream power, and bed load transport rate throughout the channel network. Our results imply a clear downstream increase of incision potential; this result would appear to be consistent with a detachment-limited response to imposed base-level fall, in which steepening of channels drives an increase in erosion rates. In contrast, however, we do not observe apparent narrowing of channels across the transition from slowly eroding to rapidly eroding portions of the watershed. Rather, the present-day channel morphology as well as its scaling of hydraulic geometry imply that the river is primarily adjusted to transport its sediment load and suggest that channel morphology may not always reflect the presence of knickpoints and differences in landscape relief.

Maintenance of neuronal size gradient in MNTB requires sound-evoked activity.

PubMed

Weatherstone, Jessica H; Kopp-Scheinpflug, Conny; Pilati, Nadia; Wang, Yuan; Forsythe, Ian D; Rubel, Edwin W; Tempel, Bruce L

2017-02-01

The medial nucleus of the trapezoid body (MNTB) is an important source of inhibition during the computation of sound location. It transmits fast and precisely timed action potentials at high frequencies; this requires an efficient calcium clearance mechanism, in which plasma membrane calcium ATPase 2 (PMCA2) is a key component. Deafwaddler ( dfw 2J ) mutant mice have a null mutation in PMCA2 causing deafness in homozygotes ( dfw 2J / dfw 2J ) and high-frequency hearing loss in heterozygotes (+/ dfw 2J ). Despite the deafness phenotype, no significant differences in MNTB volume or cell number were observed in dfw 2J homozygous mutants, suggesting that PMCA2 is not required for MNTB neuron survival. The MNTB tonotopic axis encodes high to low sound frequencies across the medial to lateral dimension. We discovered a cell size gradient along this axis: lateral neuronal somata are significantly larger than medially located somata. This size gradient is decreased in +/ dfw 2J and absent in dfw 2J / dfw 2J The lack of acoustically driven input suggests that sound-evoked activity is required for maintenance of the cell size gradient. This hypothesis was corroborated by selective elimination of auditory hair cell activity with either hair cell elimination in Pou4f3 DTR mice or inner ear tetrodotoxin (TTX) treatment. The change in soma size was reversible and recovered within 7 days of TTX treatment, suggesting that regulation of the gradient is dependent on synaptic activity and that these changes are plastic rather than permanent. NEW & NOTEWORTHY Neurons of the medial nucleus of the trapezoid body (MNTB) act as fast-spiking inhibitory interneurons within the auditory brain stem. The MNTB is topographically organized, with low sound frequencies encoded laterally and high frequencies medially. We discovered a cell size gradient along this axis: lateral neurons are larger than medial neurons. The absence of this gradient in deaf mice lacking plasma membrane calcium ATPase 2 suggests an activity-dependent, calcium-mediated mechanism that controls neuronal soma size. Copyright © 2017 the American Physiological Society.

Stream network geomorphology mediates predicted vulnerability of anadromous fish habitat to hydrologic change in southeast Alaska.

PubMed

Sloat, Matthew R; Reeves, Gordon H; Christiansen, Kelly R

2017-02-01

In rivers supporting Pacific salmon in southeast Alaska, USA, regional trends toward a warmer, wetter climate are predicted to increase mid- and late-21st-century mean annual flood size by 17% and 28%, respectively. Increased flood size could alter stream habitats used by Pacific salmon for reproduction, with negative consequences for the substantial economic, cultural, and ecosystem services these fish provide. We combined field measurements and model simulations to estimate the potential influence of future flood disturbance on geomorphic processes controlling the quality and extent of coho, chum, and pink salmon spawning habitat in over 800 southeast Alaska watersheds. Spawning habitat responses varied widely across watersheds and among salmon species. Little variation among watersheds in potential spawning habitat change was explained by predicted increases in mean annual flood size. Watershed response diversity was mediated primarily by topographic controls on stream channel confinement, reach-scale geomorphic associations with spawning habitat preferences, and complexity in the pace and mode of geomorphic channel responses to altered flood size. Potential spawning habitat loss was highest for coho salmon, which spawn over a wide range of geomorphic settings, including steeper, confined stream reaches that are more susceptible to streambed scour during high flows. We estimated that 9-10% and 13-16% of the spawning habitat for coho salmon could be lost by the 2040s and 2080s, respectively, with losses occurring primarily in confined, higher-gradient streams that provide only moderate-quality habitat. Estimated effects were lower for pink and chum salmon, which primarily spawn in unconfined floodplain streams. Our results illustrate the importance of accounting for valley and reach-scale geomorphic features in watershed assessments of climate vulnerability, especially in topographically complex regions. Failure to consider the geomorphic context of stream networks will hamper efforts to understand and mitigate the vulnerability of anadromous fish habitat to climate-induced hydrologic change. © 2016 John Wiley & Sons Ltd.

Characterizing Sediment Supply to Rivers: Effects of Lithology, Climate, Weathering and Erosion on Rock-fragment Abundance in Granitic, Hillslope Soils

NASA Astrophysics Data System (ADS)

Riebe, C. S.; Marshall, J. A.; Sklar, L. S.; Granger, D. E.

2008-12-01

River incision sets the pace of landscape evolution and so is crucial to linkages among climate, tectonics and topography. Theoretical and experimental studies indicate that bedrock river incision should be regulated by both the quantity and caliber of sediment supply, which together affect the availability and persistence of bed-scouring tools in the channel. Rates of sediment supply are now quantified routinely using cosmogenic- radionuclide-based (CRN) measurements of hillslope erosion rates. Although grain-size data are also measured routinely (e.g., as part of state and federal soil surveys), they are not widely available for soils with well-constrained rates of erosion and weathering. As a result, there is much to learn about how weathering and erosion interrelate to regulate grain-size distributions in hillslope soils. Moreover, we lack a strong empirical basis for investigating how the rate and caliber of sediment supply affect bedrock river incision in natural systems. Here we compare new grain-size data with existing CRN-based rates of erosion and weathering for a series of granitic soils at two climatically diverse sites in the Sierra Nevada, California. Our results indicate that the percentage of coarse material---which presumably becomes the bedload that abrades and lowers channels---varies significantly across each site. At the colder, wetter site, differences in grain size and soil depth are substantial, despite little variability in erosion rates; coarse material abundance appears to increase with the density of bedrock outcrops, which increases with hillslope gradients, according to previous work. At the hotter, drier site, where rates of erosion and weathering vary by 10-fold, soil thickness and texture and the abundance of outcrops do not vary systematically across the landscape. We speculate that the differences in soil development across our two sites partly reflect effects of small differences in the ratio of biotite to hornblende in the parent rock. We discuss implications for constraining the rate and caliber of sediment supply to rivers.

Flow distribution in parallel microfluidic networks and its effect on concentration gradient

PubMed Central

Guermonprez, Cyprien; Michelin, Sébastien; Baroud, Charles N.

2015-01-01

The architecture of microfluidic networks can significantly impact the flow distribution within its different branches and thereby influence tracer transport within the network. In this paper, we study the flow rate distribution within a network of parallel microfluidic channels with a single input and single output, using a combination of theoretical modeling and microfluidic experiments. Within the ladder network, the flow rate distribution follows a U-shaped profile, with the highest flow rate occurring in the initial and final branches. The contrast with the central branches is controlled by a single dimensionless parameter, namely, the ratio of hydrodynamic resistance between the distribution channel and the side branches. This contrast in flow rates decreases when the resistance of the side branches increases relative to the resistance of the distribution channel. When the inlet flow is composed of two parallel streams, one of which transporting a diffusing species, a concentration variation is produced within the side branches of the network. The shape of this concentration gradient is fully determined by two dimensionless parameters: the ratio of resistances, which determines the flow rate distribution, and the Péclet number, which characterizes the relative speed of diffusion and advection. Depending on the values of these two control parameters, different distribution profiles can be obtained ranging from a flat profile to a step distribution of solute, with well-distributed gradients between these two limits. Our experimental results are in agreement with our numerical model predictions, based on a simplified 2D advection-diffusion problem. Finally, two possible applications of this work are presented: the first one combines the present design with self-digitization principle to encapsulate the controlled concentration in nanoliter chambers, while the second one extends the present design to create a continuous concentration gradient within an open flow chamber. PMID:26487905

Development of novel microfluidic platforms for neural stem cell research

NASA Astrophysics Data System (ADS)

Chung, Bonggeun

This dissertation describes the development and characterization of novel microfluidic platforms to study proliferation, differentiation, migration, and apoptosis of neural stem cells (NSCs). NSCs hold tremendous promise for fundamental biological studies and cell-based therapies in human disorders. NSCs are defined as cells that can self-renew yet maintain the ability to generate the three principal cell types of the central nervous system such as neurons, astrocytes, and oligodendrocytes. NSCs therefore have therapeutic possibilities in multiple neurodevelopmental and neurodegenerative diseases. Despite their promise, cell-based therapies are limited by the inability to precisely control their behavior in culture. Compared to traditional culture tools, microfluidic platforms can provide much greater control over cell microenvironments and optimize proliferation and differentiation conditions of cells exposed to combinatorial mixtures of growth factors. Human NSCs were cultured for more than 1 week in the microfluidic device while constantly exposed to a continuous gradient of a growth factor mixture. NSCs proliferated and differentiated in a graded and proportional fashion that varied directly with growth factor concentration. In parallel to the study of growth and differentiation of NSCs, we are interested in proliferation and apoptosis of mouse NSCs exposed to morphogen gradients. Morphogen gradients are fundamental to animal brain development. Nonetheless, much controversy remains about the mechanisms by which morphogen gradients act on the developing brain. To overcome limitations of in-vitro models of gradients, we have developed a hybrid microfluidic platform that can mimic morphogen gradient profiles. Bone morphogenetic protein (BMP) activity in the developing cortex is graded and cortical NSC responses to BMPs are highly dependent on concentration and gradient slope of BMPs. To make novel microfluidic devices integrated with multiple functions, we have also developed a microfluidic multi-injector (MMI) that can generate temporal and spatial concentration gradients. MMI consists of fluidic channels and control channels with pneumatically actuated on-chip barrier valves. Repetitive actuations of on-chip valves control pulsatile release of solution that establishes microscopic chemical gradients. The development of novel gradient-generating microfluidic platforms will help in advancing our understanding of brain development and provide a versatile tool with basic and applied studies in stem cell biology.

Mixed convection peristaltic motion of copper-water nanomaterial with velocity slip effects in a curved channel.

PubMed

Hayat, T; Farooq, S; Alsaedi, A

2017-04-01

The primary objective of present analysis is to model the peristalsis of copper-water based nanoliquid in the presence of first order velocity and thermal slip conditions in a curved channel. Mixed convection, viscous dissipation and heat generation/absorption are also accounted. Mathematical formulation is simplified under the assumption of small Reynolds number and large wavelength. Regular perturbation technique is employed to find the solution of the resulting equations in terms of series for small Brinkman number. The final expression for pressure gradient, pressure rise, stream function, velocity and temperature are obtained and discussed through graphs. Mathematica software is utilized to compute the solution of the system of equations and to plot the graphical results. Results indicates that insertion of 30% copper nanoparticles in the basefluid (water) velocity and temperature reduces by almost 3% and 40% respecively. Moreover it is seen that size of the trapped bolus also reduces almost 20% with the insertion of 20% nanoparticles (copper) in the basefluid (water). It is noted that velocity and temperature are decreasing functions of nanoparticle volume fraction. Moreover the temperature rises when heat generation parameter and Brinkman number are enhanced. Copyright © 2017 Elsevier B.V. All rights reserved.

Effect of pore architecture on oxygen diffusion in 3D scaffolds for tissue engineering.

PubMed

Ahn, Geunseon; Park, Jeong Hun; Kang, Taeyun; Lee, Jin Woo; Kang, Hyun-Wook; Cho, Dong-Woo

2010-10-01

The aim of this study was to maximize oxygen diffusion within a three-dimensional scaffold in order to improve cell viability and proliferation. To evaluate the effect of pore architecture on oxygen diffusion, we designed a regular channel shape with uniform diameter, referred to as cylinder shaped, and a new channel shape with a channel diameter gradient, referred to as cone shaped. A numerical analysis predicted higher oxygen concentration in the cone-shaped channels than in the cylinder-shaped channels, throughout the scaffold. To confirm these numerical results, we examined cell proliferation and viability in 2D constructs and 3D scaffolds. Cell culture experiments revealed that cell proliferation and viability were superior in the constructs and scaffolds with cone-shaped channels.

Computational study of a magnetic design to improve the diagnosis of malaria: 2D model

NASA Astrophysics Data System (ADS)

Vyas, Siddharth; Genis, Vladimir; Friedman, Gary

2017-02-01

This paper investigates the feasibility of a cost effective high gradient magnetic separation based device for the detection and identification of malaria parasites in a blood sample. The design utilizes magnetic properties of hemozoin present in malaria-infected red blood cells (mRBCs) in order to separate and concentrate them inside a microfluidic channel slide for easier examination under the microscope. The design consists of a rectangular microfluidic channel with multiple magnetic wires positioned on top of and underneath it along the length of the channel at a small angle with respect to the channel axis. Strong magnetic field gradients, produced by the wires, exert sufficient magnetic forces on the mRBCs in order to separate and concentrate them in a specific region small enough to fit within the microscope field of view at magnifications typically required to identify the malaria parasite type. The feasibility of the device is studied using a model where the trajectories of the mRBCs inside the channel are determined using first-order ordinary differential equations (ODEs) solved numerically using a multistep ODE solver available within MATLAB. The mRBCs trajectories reveal that it is possible to separate and concentrate the mRBCs in less than 5 min, even in cases of very low parasitemia (1-10 parasites/μL of blood) using blood sample volumes of around 3 μL employed today.

Capturing tensile size-dependency in polymer nanofiber elasticity.

PubMed

Yuan, Bo; Wang, Jun; Han, Ray P S

2015-02-01

As the name implies, tensile size-dependency refers to the size-dependent response under uniaxial tension. It defers markedly from bending size-dependency in terms of onset and magnitude of the size-dependent response; the former begins earlier but rises to a smaller value than the latter. Experimentally, tensile size-dependent behavior is much harder to capture than its bending counterpart. This is also true in the computational effort; bending size-dependency models are more prevalent and well-developed. Indeed, many have questioned the existence of tensile size-dependency. However, recent experiments seem to support the existence of this phenomenon. Current strain gradient elasticity theories can accurately predict bending size-dependency but are unable to track tensile size-dependency. To rectify this deficiency a higher-order strain gradient elasticity model is constructed by including the second gradient of the strain into the deformation energy. Tensile experiments involving 10 wt% polycaprolactone nanofibers are performed to calibrate and verify our model. The results reveal that for the selected nanofibers, their size-dependency begins when their diameters reduce to 600 nm and below. Further, their characteristic length-scale parameter is found to be 1095.8 nm. Copyright © 2014 Elsevier Ltd. All rights reserved.

Internal transport barriers in the National Spherical Torus Experimenta)

NASA Astrophysics Data System (ADS)

Yuh, H. Y.; Levinton, F. M.; Bell, R. E.; Hosea, J. C.; Kaye, S. M.; LeBlanc, B. P.; Mazzucato, E.; Peterson, J. L.; Smith, D. R.; Candy, J.; Waltz, R. E.; Domier, C. W.; Luhmann, N. C.; Lee, W.; Park, H. K.

2009-05-01

In the National Spherical Torus Experiment [M. Ono et al., Nucl. Fusion 41, 1435 (2001)], internal transport barriers (ITBs) are observed in reversed (negative) shear discharges where diffusivities for electron and ion thermal channels and momentum are reduced. While neutral beam heating can produce ITBs in both electron and ion channels, high harmonic fast wave heating can also produce electron ITBs (e-ITBs) under reversed magnetic shear conditions without momentum input. Interestingly, the location of the e-ITB does not necessarily match that of the ion ITB (i-ITB). The e-ITB location correlates best with the magnetic shear minima location determined by motional Stark effect constrained equilibria, whereas the i-ITB location better correlates with the location of maximum E ×B shearing rate. Measured electron temperature gradients in the e-ITB can exceed critical gradients for the onset of electron thermal gradient microinstabilities calculated by linear gyrokinetic codes. A high-k microwave scattering diagnostic shows locally reduced density fluctuations at wave numbers characteristic of electron turbulence for discharges with strongly negative magnetic shear versus weakly negative or positive magnetic shear. Reductions in fluctuation amplitude are found to be correlated with the local value of magnetic shear. These results are consistent with nonlinear gyrokinetic simulations predicting a reduction in electron turbulence under negative magnetic shear conditions despite exceeding critical gradients.

Braided fluvial sedimentation in the lower paleozoic cape basin, South Africa

NASA Astrophysics Data System (ADS)

Vos, Richard G.; Tankard, Anthony J.

1981-07-01

Lower Paleozoic braided stream deposits from the Piekenier Formation in the Cape Province, South Africa, provide information on lateral and vertical facies variability in an alluvial plain complex influenced by a moderate to high runoff. Four braided stream facies are recognized on the basis of distinct lithologies and assemblages of sedimentary structures. A lower facies, dominated by upward-fining conglomerate to sandstone and mudstone channel fill sequences, is interpreted as a middle to lower alluvial plain deposit with significant suspended load sedimentation in areas of moderate to low gradients. These deposits are succeeded by longitudinal conglomerate bars which are attributed to middle to upper alluvial plain sedimentation with steeper gradients. This facies is in turn overlain by braid bar complexes of large-scale transverse to linguoid dunes consisting of coarse-grained pebbly sandstones with conglomerate lenses. These bar complexes are compared with environments of the Recent Platte River. They represent a middle to lower alluvial plain facies with moderate gradients and no significant suspended load sedimentation or vegetation to stabilize channels. These bar complexes interfinger basinward with plane bedded medium to coarse-grained sandstones interpreted as sheet flood deposits over the distal portions of an alluvial plain with low gradients and lacking fine-grained detritus or vegetation.

Measuring small compartment dimensions by probing diffusion dynamics via Non-uniform Oscillating-Gradient Spin-Echo (NOGSE) NMR.

PubMed

Shemesh, Noam; Alvarez, Gonzalo A; Frydman, Lucio

2013-12-01

Noninvasive measurements of microstructure in materials, cells, and in biological tissues, constitute a unique capability of gradient-assisted NMR. Diffusion-diffraction MR approaches pioneered by Callaghan demonstrated this ability; Oscillating-Gradient Spin-Echo (OGSE) methodologies tackle the demanding gradient amplitudes required for observing diffraction patterns by utilizing constant-frequency oscillating gradient pairs that probe the diffusion spectrum, D(ω). Here we present a new class of diffusion MR experiments, termed Non-uniform Oscillating-Gradient Spin-Echo (NOGSE), which dynamically probe multiple frequencies of the diffusion spectral density at once, thus affording direct microstructural information on the compartment's dimension. The NOGSE methodology applies N constant-amplitude gradient oscillations; N-1 of these oscillations are spaced by a characteristic time x, followed by a single gradient oscillation characterized by a time y, such that the diffusion dynamics is probed while keeping (N-1)x+y≡TNOGSE constant. These constant-time, fixed-gradient-amplitude, multi-frequency attributes render NOGSE particularly useful for probing small compartment dimensions with relatively weak gradients - alleviating difficulties associated with probing D(ω) frequency-by-frequency or with varying relaxation weightings, as in other diffusion-monitoring experiments. Analytical descriptions of the NOGSE signal are given, and the sequence's ability to extract small compartment sizes with a sensitivity towards length to the sixth power, is demonstrated using a microstructural phantom. Excellent agreement between theory and experiments was evidenced even upon applying weak gradient amplitudes. An MR imaging version of NOGSE was also implemented in ex vivo pig spinal cords and mouse brains, affording maps based on compartment sizes. The effects of size distributions on NOGSE are also briefly analyzed. Copyright © 2013 Elsevier Inc. All rights reserved.

Adaptive filter design using recurrent cerebellar model articulation controller.

PubMed

Lin, Chih-Min; Chen, Li-Yang; Yeung, Daniel S

2010-07-01

A novel adaptive filter is proposed using a recurrent cerebellar-model-articulation-controller (CMAC). The proposed locally recurrent globally feedforward recurrent CMAC (RCMAC) has favorable properties of small size, good generalization, rapid learning, and dynamic response, thus it is more suitable for high-speed signal processing. To provide fast training, an efficient parameter learning algorithm based on the normalized gradient descent method is presented, in which the learning rates are on-line adapted. Then the Lyapunov function is utilized to derive the conditions of the adaptive learning rates, so the stability of the filtering error can be guaranteed. To demonstrate the performance of the proposed adaptive RCMAC filter, it is applied to a nonlinear channel equalization system and an adaptive noise cancelation system. The advantages of the proposed filter over other adaptive filters are verified through simulations.

Wind flow in an urban environment.

PubMed

Dutt, A J

1991-10-01

The wind environment at ground leven in built-up areas is influenced by the extremely complex interaction amongst incident wind, mean vertical velocity gradient, turbulence and the shapes, sizes and layouts of building. Random layout of buildings could generate zones of overspeed and vortices in the connecting passage way between buildings, terraces, opensided shelters, courtyards, which could potentially cause unpleasantness, hazard from resuspended particulates, and airborne rain penetration into the buildings. The paper presents the results of two case studies comprising field measurements made within the Kent Ridge Campus, National University of Singapore, using DANTEC 54N10 Multichannel Flow Analyser and Probes. Results are presented in terms of non-dimensional windspeed coefficients. It is concluded that there is significant increase in windspeed due to channel and venturi effects. This information provides useful guidelines for building plans and layouts to the architects and engineers.

Adaptive UEP and Packet Size Assignment for Scalable Video Transmission over Burst-Error Channels

NASA Astrophysics Data System (ADS)

Lee, Chen-Wei; Yang, Chu-Sing; Su, Yih-Ching

2006-12-01

This work proposes an adaptive unequal error protection (UEP) and packet size assignment scheme for scalable video transmission over a burst-error channel. An analytic model is developed to evaluate the impact of channel bit error rate on the quality of streaming scalable video. A video transmission scheme, which combines the adaptive assignment of packet size with unequal error protection to increase the end-to-end video quality, is proposed. Several distinct scalable video transmission schemes over burst-error channel have been compared, and the simulation results reveal that the proposed transmission schemes can react to varying channel conditions with less and smoother quality degradation.

Combinatorial Strategies and High Throughput Screening in Drug Discovery Targeted to the Channel of Botulinum Neurotoxin

DTIC Science & Technology

2006-09-01

block the HC channel. memantine NH2 amantadine H2N quinacrine NH O N lidocaine NH O N QX-222 S N Cl chlorpromazine N NCl O HN N Our objective was to...M2 protein2 and its derivative, memantine , which blocks the NMDA receptor channel3, and is approved by the FDA for the treatment of dementia...intracellular processing of BoNTs by collapsing the pH gradient across endosomes6,7. Chlorpromazine, quinacrine and memantine , in addition, cross the blood

Soil Mixing Coupled to Soil Production and Transport on Hillslopes: Responses to Channel Incision, Feather River, California

NASA Astrophysics Data System (ADS)

Yoo, K.; Weinman, B. A.; Mudd, S. M.; Hurst, M. D.; Gabet, E. J.; Singhvi, A. K.; Maher, K.

2012-12-01

Soil mantled hillslopes arise from the combined processes of soil production from the underlying in-situ saprolite/bedrock and the subsequent lateral transport of the colluvial soil materials toward hillslope toes. Often these toes are bounded by channels and respond to channel aggradation or incision. Biological agents such as trees and burrowing animals are often observed to be responsible for soil production and transport. Thus morphologic evolution of hillslopes is primarily derived by the combined action of channel processes setting the hillslopes' boundary condition and biophysical perturbations mixing soils. However, little is known about how the soil perturbation is coupled to the production and transport of soils. Here we quantify soil-mixing rates using optically stimulated luminescence at two hillslopes with contrasting slope gradients and erosion rates being located above and below a migrating knickpoint. The knickpoint is within a tributary basin to the Middle Fork Feather River that incised into a Sierran granitic batholith over the past five million years creating ~1km relief between the river and the surrounding plateau. Vertical soil-mixing rates range from 5-19 cm/kyr and do not vary with slope gradients and physical erosion rate. The distributions of single grain OSL ages from the two hillslopes' soils are also undistinguishable. Furthermore, LiDAR-based tree heights and densities are not statistically different between the two Hillslopes. Therefore, soil perturbation with indistinguishable intensities results in large difference in sediment flux when subject to different slope gradients. Not only do the soils in the three transects have similar mixing rates, but they also feature similar soil thicknesses. These properties, given the transects' differing erosion rates, can only be explained by varying chemical weathering processes in saprolite.

Observations of a tidal intrusion front in a tidal channel

NASA Astrophysics Data System (ADS)

Lu, Shasha; Xia, Xiaoming; Thompson, Charlie E. L.; Cao, Zhenyi; Liu, Yifei

2017-11-01

A visible front indicated by a surface colour change, and sometimes associated with foam or debris lines, was observed in a tidal channel during neap tide. This is an example of a tidal intrusion front occurring in the absence of sudden topographical changes or reversing flows, typically reported to be associated with such fronts. Detailed Acoustic Doppler Current Profiler and conductivity/temperature/depth measurements were taken on repeated transects both with fronts apparent and with fronts absent. The results indicated that the front occurred as a result of stratification, which was sustained by the buoyancy flux and the weak tide-induced mixing during neap ebb tide. The stronger tide-induced mixing during spring tide restrained stratification, leading to the absence of a front. The mechanism of the frontogenesis was the density gradient between the stratified water formed during neap ebb tide, and the more mixed seawater during neap flood tide; thus, the water on the landward (southwestern) side of the front was stratified, and that on the seaward side (northeastern) of the front was vertically well mixed. Gradient Richardson number estimates suggest that the flow between the stratified and mixed water was near the threshold 0.25 for shear instability. Meanwhile, the density gradient would provide an initial baroclinic contribution to velocity convergence, which is indicated by the accumulation of buoyant matter such as foam, grass, and debris into a sharply defined line along the surface. The front migrates with the flood current, with a local maximum towards the eastern side of the channel, leading to an asymmetrical shape with the eastern side of the front driven further into the Tiaozhoumen tidal channel.

Bedload entrainment in low-gradient paraglacial coastal rivers of Maine, U.S.A.: Implications for habitat restoration

NASA Astrophysics Data System (ADS)

Snyder, Noah P.; Castele, Michael R.; Wright, Jed R.

2009-02-01

The rivers of coastal Maine flow through mainstem lakes and long low-gradient reaches that break the continuum of bedload transport expected in nonparaglacial landscapes. Stream erosion of glacial deposits supplies coarse sediment to these systems. The land use history includes intensive timber harvest and associated dam construction, which may have altered the frequency of substrate-mobilizing events. These watersheds are vital habitat for the last remaining wild anadromous Atlantic salmon in the United States. Future adjustments in channel morphology and habitat quality (via natural stream processes or restoration projects) depend on erosion, transport, and deposition of coarse sediment. These factors motivate our study of competence at four sites in the Sheepscot and Narraguagus watersheds. Three of the four sites behaved roughly similarly, with particle entrainment during intervals that include winter ice and spring flood conditions, and relatively minor bed mobilization during moderate floods in the summer and fall (with a recurrence interval of 2-3 years). The fourth site, on the Sheepscot River mainstem, exhibits more vigorous entrainment of marked particles and more complex three-dimensional channel morphology. This contrast is partially due to local geomorphic conditions that favor high shear stresses (particularly relatively steep gradient), but also likely to nourishment of the bedload saltation system by recruitment from an eroding glacial deposit upstream. Our results suggest that the frequency and magnitude of bedload transport are reach specific, depending on factors including local channel geometry, upstream sediment supply and transport, and formation of anchor ice. This presents a challenge for stream practitioners in this region: different reaches may require contrasting management strategies. Our results underscore the importance of understanding channel processes at a given site and assessing conditions upstream and downstream as a prerequisite for conducting habitat restoration projects.

Assessment of coarse sediment mobility in the Black Canyon of the Gunnison River, Colorado.

PubMed

Dubinski, Ian M; Wohl, Ellen

2007-07-01

The Gunnison River in the Black Canyon of the Gunnison National Park (BCNP) near Montrose, Colorado is a mixed gravel and bedrock river with ephemeral side tributaries. Flow rates are controlled immediately upstream by a diversion tunnel and three reservoirs. The management of the hydraulic control structures has decreased low-frequency, high-stage flows, which are the dominant geomorphic force in bedrock channel systems. We developed a simple model to estimate the extent of sediment mobilization at a given flow in the BCNP and to evaluate changes in the extent and frequency of sediment mobilization for flow regimes before and after flow regulation in 1966. Our methodology provides a screening process for identifying and prioritizing areas in terms of sediment mobility criteria when more precise systematic field data are unavailable. The model uses the ratio between reach-averaged bed shear stress and critical shear stress to estimate when a particular grain size is mobilized for a given reach. We used aerial photography from 1992, digital elevation models, and field surveys to identify individual reaches and estimate reach-averaged hydraulic geometry. Pebble counts of talus and debris fan deposits were used to estimate regional colluvial grain-size distributions. Our results show that the frequency of flows mobilizing river bank sediment along a majority of the Gunnison River in the BCNP has significantly declined since 1966. The model results correspond well to those obtained from more detailed, site-specific field studies carried out by other investigators. Decreases in the frequency of significant sediment-mobilizing flows were more pronounced for regions within the BCNP where the channel gradient is lower. Implications of these results for management include increased risk of encroachment of vegetation on the active channel and long-term channel narrowing by colluvial deposits. It must be recognized that our methodology represents a screening of regional differences in sediment mobility. More precise estimates of hydraulic and sediment parameters would likely be required for dictating quantitative management objectives within the context of sediment mobility and sensitivity to changes in the flow regime.

Using LiDAR to Estimate Surface Erosion Volumes within the Post-storm 2012 Bagley Fire

NASA Astrophysics Data System (ADS)

Mikulovsky, R. P.; De La Fuente, J. A.; Mondry, Z. J.

2014-12-01

The total post-storm 2012 Bagley fire sediment budget of the Squaw Creek watershed in the Shasta-Trinity National Forest was estimated using many methods. A portion of the budget was quantitatively estimated using LiDAR. Simple workflows were designed to estimate the eroded volume's of debris slides, fill failures, gullies, altered channels and streams. LiDAR was also used to estimate depositional volumes. Thorough manual mapping of large erosional features using the ArcGIS 10.1 Geographic Information System was required as these mapped features determined the eroded volume boundaries in 3D space. The 3D pre-erosional surface for each mapped feature was interpolated based on the boundary elevations. A surface difference calculation was run using the estimated pre-erosional surfaces and LiDAR surfaces to determine volume of sediment potentially delivered into the stream system. In addition, cross sections of altered channels and streams were taken using stratified random selection based on channel gradient and stream order respectively. The original pre-storm surfaces of channel features were estimated using the cross sections and erosion depth criteria. Open source software Inkscape was used to estimate cross sectional areas for randomly selected channel features and then averaged for each channel gradient and stream order classes. The average areas were then multiplied by the length of each class to estimate total eroded altered channel and stream volume. Finally, reservoir and in-channel depositional volumes were estimated by mapping channel forms and generating specific reservoir elevation zones associated with depositional events. The in-channel areas and zones within the reservoir were multiplied by estimated and field observed sediment thicknesses to attain a best guess sediment volume. In channel estimates included re-occupying stream channel cross sections established before the fire. Once volumes were calculated, other erosion processes of the Bagley sedimentation study, such as surface soil erosion were combined to estimate the total fire and storm sediment budget for the Squaw Creek watershed. The LiDAR-based measurement workflows can be easily applied to other sediment budget studies using one high resolution LiDAR dataset.

Short infrared laser pulses increase cell membrane fluidity

NASA Astrophysics Data System (ADS)

Walsh, Alex J.; Cantu, Jody C.; Ibey, Bennett L.; Beier, Hope T.

2017-02-01

Short infrared laser pulses induce a variety of effects in cells and tissues, including neural stimulation and inhibition. However, the mechanism behind these physiological effects is poorly understood. It is known that the fast thermal gradient induced by the infrared light is necessary for these biological effects. Therefore, this study tests the hypothesis that the fast thermal gradient induced in a cell by infrared light exposure causes a change in the membrane fluidity. To test this hypothesis, we used the membrane fluidity dye, di-4-ANEPPDHQ, to investigate membrane fluidity changes following infrared light exposure. Di-4-ANEPPDHQ fluorescence was imaged on a wide-field fluorescence imaging system with dual channel emission detection. The dual channel imaging allowed imaging of emitted fluorescence at wavelengths longer and shorter than 647 nm for ratiometric assessment and computation of a membrane generalized polarization (GP) value. Results in CHO cells show increased membrane fluidity with infrared light pulse exposure and this increased fluidity scales with infrared irradiance. Full recovery of pre-infrared exposure membrane fluidity was observed. Altogether, these results demonstrate that infrared light induces a thermal gradient in cells that changes membrane fluidity.

Unraveling the channel–lobe transition zone with high-resolution AUV bathymetry: Navy Fan, offshore Baja California, Mexico

USGS Publications Warehouse

Carvajal, Cristian; Paull, Charles K.; Caress, David W.; Fildani, Andrea; Lundsten, Eve M.; Anderson, Krystle; Maier, Katherine L.; McGann, Mary; Gwiazda, Roberto; Herguera, Juan Carlos

2017-01-01

Ultra-high-resolution (1 m * 1 m * 0.25 m) bathymetry was acquired with an autonomous underwater vehicle (AUV) over a sector of the Navy Fan offshore Baja California. The survey specifically targeted an area where the former interpretation of the fan showed a channel–lobe transition; however, the lobe and the transition were not recognized. Instead, the newly acquired bathymetry shows that the previously identified channel continues basinward changing its overall morphology and stratigraphic architecture, becoming gradually but significantly wider (650–1000 m) and of lower relief (3–4 m). Cores from the channel thalweg recovered mud-poor (< 5%) well-sorted sands, interpreted as deposited by fully turbulent flows. The cores also show several mud-rich (9–18%) poorly sorted sands, probably indicating deposition from more cohesive flows.The high-resolution bathymetry shows large sectors of the seafloor sculpted by elaborate bedforms and scours. The overbank area north of the channel exhibits the most numerous and prominent scours, interpreted to have been largely generated by flow stripping at a bend in the channel. Along high-gradient sectors (more than approximately 1¯) of this area, the scours are largest and deepest. Some of these scours show an erosional headwall and a distal upflow-dipping depositional bulge, forming repetitive bedforms interpreted as erosional cyclic steps associated with locked-in-place trains of hydraulic jumps. The scours seem to coalesce to form an incipient channel, which would likely drive the avulsion of the main channel. Further basinward, average gradients decrease (< 0.6¯ ) and scours become smaller and less deep suggesting a gradient control on erosion. The southern channel margin and adjacent overbank area exhibit a trend of scours that are elongated transverse to flow, that successively repeat themselves basinwards, and that at times merge with sediment waves. Probably these scours are genetically linked to sediment waves, and they may have been formed by cyclic-step-like processes as well. The acquired bathymetry represents a breakthrough in the imaging of the proximal sectors of deep-sea fans, which provides the basis for an accurate morphometric characterization and the understanding of sedimentary processes and morphodynamics associated with the delivery of sediment into the deep sea.

Modes of development of slope canyons and their relation to channel and levee features on the Ebro sediment apron, off-shore northeastern Spain

USGS Publications Warehouse

O'Connell, S.; Ryan, William B. F.; Normark, W.R.

1987-01-01

Six submarine slope canyons in an area of the northwestern Mediterranean, offshore from the Ebro River and Delta, were surveyed with bathymetric swathmapping (SeaBeam) and mid-range side-looking sonar (SeaMARC I). All of the canyons have slightly winding paths with concave-upwards gradients that are relatively steep shallower than 1,200 m. Two major types of canyons are identified on the basis of their morphologic character at the base of the slope; Type-I canyons lead to an unchannelled base-of-slope deposit and Type-II canyons are continuous with channel-levee systems that cross the rise. Four Type-I canyons were surveyed in the area. Two of these are broad, U-shaped, steep (average gradients of 1:14), do not indent the shelf, and terminate downslope at debris-flow deposits. These two canyons, the most northern in the area, have rounded heads with extensive gullies separated by knife-edge ridges. Relief of the canyon walls is about equal on both sides of the canyons, although the right-hand walls (looking downslope) are generally steeper. The other two Type-I canyons in the area are similar in that they do not indent the shelf, but they are much smaller and shallower and coalesce before terminating in the base-of-slope region. The two Type-II canyons that feed leveed-channels are U-shaped with flatter floors, longer profiles and gentler gradients than Type-I canyons. They are closer to the Valencia Valley and have relatively small cross-sectional areas. We propose a four-stage evolutionary sequence to explain the development of the canyons observed in this section on the prograding Ebro margin. During the initial stage, slumping and erosion on the slope creates a network of small gullies. During the next stage, headward growth of one (or more) gully leads to a major indentation of the shelf. This is the critical factor for developing a channel that will incise the slope and provide a major conduit for moving sediment to the basin. Stage 3 is characterized by the development of a continuous channel accompanied by levee growth across the lobe. In the final stage, the channel-levee system becomes inactive either through destruction by mass wasting, infilling of the channel, or loss of the major sediment source. ?? 1987.

Fertilization selection on egg and jelly-coat size in the sand dollar Dendraster excentricus.

PubMed

Levitan, D R; Irvine, S D

2001-12-01

Organisms with external fertilization are often sperm limited, and in echinoids, larger eggs have a higher probability of fertilization than smaller eggs. This difference is thought to be a result of the more frequent sperm-egg collisions experienced by larger targets. Here we report how two components of egg target size, the egg cell and jelly coat, contributed to fertilization success in a selection experiment. We used a cross-sectional analysis of correlated characters to estimate the selection gradients on egg and jelly-coat size in five replicate male pairs of the sand dollar Dendraster excentricus. Results indicated that eggs with larger cells and jelly coats were preferentially fertilized under sperm limitation in the laboratory. The selection gradients were an average of 922% steeper for egg than for jelly-coat size. The standardized selection gradients for egg and jelly-coat size were similar. Our results suggest that fertilization selection can act on both egg-cell and jelly-coat size but that an increase in egg-cell volume is much more likely to increase fertilization success than an equal change in jelly-coat volume. The strengths of the selection gradients were inversely related to the correlation of egg traits across replicate egg clutches. This result suggests the importance of replication in studies of selection of correlated characters.

Assembly of multiple cell gradients directed by three-dimensional microfluidic channels.

PubMed

Li, Yiwei; Feng, Xiaojun; Wang, Yachao; Du, Wei; Chen, Peng; Liu, Chao; Liu, Bi-Feng

2015-08-07

Active control over the cell gradient is essential for understanding biological systems and the reconstitution of the functionality of many types of tissues, particularly for organ-on-a-chip. Here, we propose a three-dimensional (3D) microfluidic strategy for generating controllable cell gradients. In this approach, a homogeneous cell suspension is loaded into a 3D stair-shaped PDMS microchannel to generate a cell gradient within 10 min by sedimentation. We demonstrate that cell gradients of various profiles (exponential and piecewise linear) can be achieved by precisely controlling the height of each layer during the fabrication. With sequential seeding, we further demonstrate the generation of two overlapping cell gradients on the same glass substrate with pre-defined designs. The cell gradient-based QD cytotoxicity assay also demonstrated that cell behaviors and resistances were regulated by the changes in cell density. These results reveal that the proposed 3D microfluidic strategy provides a simple and versatile means for establishing controllable gradients in cell density, opening up a new avenue for reconstructing functional tissues.

Specifics of heat and mass transfer in spherical dimples under the effect of external factors

NASA Astrophysics Data System (ADS)

Shchukin, A. V.; Il'inkov, A. V.; Takmovtsev, V. V.; Khabibullin, I. I.

2017-06-01

The specifics are examined of heat transfer enhancement with spherical dimples under the effect of factors important for practice and characteristic of cooling systems of gas-turbine engines and power units. This experimental investigation deals with the effect of the following factors on the flow in a channel with hemispherical dimples: continuous air swirl in an annulus with dimples on its concave wall, dimples on the convex or concave wall of a curved rectangular channel, imposition of regular velocity fluctuations on the external flow in a straight rectangular channel, and adverse or favorable pressure gradient along the flow direction. The flow is turbulent. Reynolds numbers based on the channel hydraulic diameter are on the order of 104. Results of the investigation of a model of a two-cavity diffuser dimple proposed by the authors are presented. It has been found that results for channels with spherical dimples and for smooth channels differ not only quantitatively but also qualitatively. Thus, if the effect of centrifugal mass forces on convex and concave surfaces with hemispherical dimples and in a smooth channel is almost the same (quantitative and qualitative indicators are identical), the pressure gradient in the flow direction brings about the drastically opposite results. At the same time, the quantitative contribution to a change in heat transfer in hemispherical dimples is different and depends on the impact type. The results are discussed with the use of physical models created on the basis of the results of flow visualization studies and data on the turbulence intensity, pressure coefficient, etc. Results of the investigations suggest that application of spherical dimples under nonstandard conditions requires the calculated heat transfer to be corrected to account for one or another effect.

Comparison of superhydrophobic drag reduction between turbulent pipe and channel flows

NASA Astrophysics Data System (ADS)

Im, Hyung Jae; Lee, Jae Hwa

2017-09-01

It has been known over several decades that canonical wall-bounded internal flows of a pipe and channel share flow similarities, in particular, close to the wall due to the negligible curvature effect. In the present study, direct numerical simulations of fully developed turbulent pipe and channel flows are performed to investigate the influence of the superhydrophobic surfaces (SHSs) on the turbulence dynamics and the resultant drag reduction (DR) of the flows under similar conditions. SHSs at the wall are modeled in spanwise-alternating longitudinal regions with a boundary with no-slip and shear-free conditions, and the two parameters of the spanwise periodicity (P/δ) and SHS fraction (GF) within a pitch are considered. It is shown, in agreement with previous investigations in channels, that the turbulent drag for the pipe and channel flows over SHSs is continuously decreased with increases in P/δ and GF. However, the DR rate in the pipe flows is greater than that in the channel flows with an accompanying reduction of the Reynolds stress. The enhanced performance of the DR for the pipe flow is attributed to the increased streamwise slip and weakened Reynolds shear stress contributions. In addition, a mathematical analysis of the spanwise mean vorticity equation suggests that the presence of a strong secondary flow due to the increased spanwise slip of the pipe flows makes a greater negative contribution of advective vorticity transport than the channel flows, resulting in a higher DR value. Finally, an inspection of the origin of the mean secondary flow in turbulent flows over SHSs based on the spatial gradients of the turbulent kinetic energy demonstrates that the secondary flow is both driven and sustained by spatial gradients in the Reynolds stress components, i.e., Prandtl's secondary flow of the second kind.

Self-Optimized Biological Channels in Facilitating the Transmembrane Movement of Charged Molecules

PubMed Central

Huyen, V. T. N.; Lap, Vu Cong; Nguyen, V. Lien

2016-01-01

We consider an anisotropically two-dimensional diffusion of a charged molecule (particle) through a large biological channel under an external voltage. The channel is modeled as a cylinder of three structure parameters: radius, length, and surface density of negative charges located at the channel interior-lining. These charges induce inside the channel a potential that plays a key role in controlling the particle current through the channel. It was shown that to facilitate the transmembrane particle movement the channel should be reasonably self-optimized so that its potential coincides with the resonant one, resulting in a large particle current across the channel. Observed facilitation appears to be an intrinsic property of biological channels, regardless of the external voltage or the particle concentration gradient. This facilitation is very selective in the sense that a channel of definite structure parameters can facilitate the transmembrane movement of only particles of proper valence at corresponding temperatures. Calculations also show that the modeled channel is nonohmic with the ion conductance which exhibits a resonance at the same channel potential as that identified in the current. PMID:27022394

Electrophysiological and biochemical evidence that DEG/ENaC cation channels are composed of nine subunits.

PubMed

Snyder, P M; Cheng, C; Prince, L S; Rogers, J C; Welsh, M J

1998-01-09

Members of the DEG/ENaC protein family form ion channels with diverse functions. DEG/ENaC subunits associate as hetero- and homomultimers to generate channels; however the stoichiometry of these complexes is unknown. To determine the subunit stoichiometry of the human epithelial Na+ channel (hENaC), we expressed the three wild-type hENaC subunits (alpha, beta, and gamma) with subunits containing mutations that alter channel inhibition by methanethiosulfonates. The data indicate that hENaC contains three alpha, three beta, and three gamma subunits. Sucrose gradient sedimentation of alphahENaC translated in vitro, as well as alpha-, beta-, and gammahENaC coexpressed in cells, was consistent with complexes containing nine subunits. FaNaCh and BNC1, two related DEG/ENaC channels, produced complexes of similar mass. Our results suggest a novel nine-subunit stoichiometry for the DEG/ENaC family of ion channels.

Channel Size Conversion of Phi29 DNA-Packaging Nanomotor for Discrimination of Single- and Double-Stranded Nucleic Acids

PubMed Central

Geng, Jia; Wang, Shaoying; Fang, Huaming; Guo, Peixuan

2013-01-01

Nanopores have been utilized to detect the conformation and dynamics of polymers, including DNA and RNA. Biological pores are extremely reproducible at the atomic level with uniform channel sizes. The channel of the bacterial virus phi29 DNA packaging motor is a natural conduit for the transportation of double-stranded DNA (dsDNA), and has the largest diameter among the well-studied biological channels. The larger channel facilitates translocation of dsDNA, and offers more space for further channel modification and conjugation. Interestingly, the relatively large wild type channel, which translocates dsDNA, cannot detect single-stranded nucleic acids (ssDNA or ssRNA) under the current experimental conditions. Herein, we reengineered this motor channel by removing the internal loop segment of the channel. The modification resulted in two classes of channels. One class was the same size as the wild type channel, while the other class had a cross-sectional area about 60% of the wild type. This smaller channel was able to detect the real-time translocation of single stranded nucleic acids at single-molecule level. While the wild type connector exhibited a one-way traffic property with respect to dsDNA translocation, the loop deleted connector was able to translocate ssDNA and ssRNA with equal competencies from both termini. This finding of size alterations in reengineered motor channels expands the potential application of the phi29 DNA packaging motor in nanomedicine, nanobiotechnology, and high-throughput single pore DNA sequencing. PMID:23488809

DNA translocation across protein channels: How does a polymer worm through a hole?

NASA Astrophysics Data System (ADS)

Muthukumar, M.

2001-03-01

Free energy barriers control the translocation of polymers through narrow channels. Based on an analogy with the classical nucleation and growth process, we have calculated the translocation time and its dependencies on the length, stiffness, and sequence of the polymer, solution conditions, and the strength of the driving electrochemical potential gradient. Our predictions will be compared with experimental results and prospects of reading polymer sequences.

CLC-Nt1, a putative chloride channel protein of tobacco, co-localizes with mitochondrial membrane markers.

PubMed Central

Lurin, C; Güclü, J; Cheniclet, C; Carde, J P; Barbier-Brygoo, H; Maurel, C

2000-01-01

The voltage-dependent chloride channel (CLC) family of membrane proteins has cognates in animals, yeast, bacteria and plants, and chloride-channel activity has been assigned to most of the animal homologues. Lack of evidence of CLC functions in plants prompted us to characterize the cellular localization of the tobacco CLC-Nt1 protein. Specific polyclonal antibodies were raised against an N-terminal polypeptide of CLC-Nt1. These antibodies were used to probe membrane proteins prepared by various cell-fractionation methods. These included aqueous two-phase partitioning (for plasma membranes), free-flow electrophoresis (for vacuolar and plasma membranes), intact vacuole isolation, Percoll-gradient centrifugation (for plastids and mitochondria) and stepped, linear, sucrose-density-gradient centrifugation (for mitochondria). Each purified membrane fraction was characterized with specific marker enzyme activities or antibodies. Our studies ruled out the possibility that the major cell localization of CLC-Nt1 was the vacuolar or plasma membranes, the endoplasmic reticulum, the Golgi apparatus or the plastids. In contrast, we showed that the tobacco CLC-Nt1 specifically co-localized with the markers of the mitochondrial inner membrane, cytochrome c oxidase and NAD9 protein. CLC-Nt1 may correspond to the inner membrane anion channel ('IMAC') described previously in animal and plant mitochondria. PMID:10816421

CLC-Nt1, a putative chloride channel protein of tobacco, co-localizes with mitochondrial membrane markers.

PubMed

Lurin, C; Güclü, J; Cheniclet, C; Carde, J P; Barbier-Brygoo, H; Maurel, C

2000-06-01

The voltage-dependent chloride channel (CLC) family of membrane proteins has cognates in animals, yeast, bacteria and plants, and chloride-channel activity has been assigned to most of the animal homologues. Lack of evidence of CLC functions in plants prompted us to characterize the cellular localization of the tobacco CLC-Nt1 protein. Specific polyclonal antibodies were raised against an N-terminal polypeptide of CLC-Nt1. These antibodies were used to probe membrane proteins prepared by various cell-fractionation methods. These included aqueous two-phase partitioning (for plasma membranes), free-flow electrophoresis (for vacuolar and plasma membranes), intact vacuole isolation, Percoll-gradient centrifugation (for plastids and mitochondria) and stepped, linear, sucrose-density-gradient centrifugation (for mitochondria). Each purified membrane fraction was characterized with specific marker enzyme activities or antibodies. Our studies ruled out the possibility that the major cell localization of CLC-Nt1 was the vacuolar or plasma membranes, the endoplasmic reticulum, the Golgi apparatus or the plastids. In contrast, we showed that the tobacco CLC-Nt1 specifically co-localized with the markers of the mitochondrial inner membrane, cytochrome c oxidase and NAD9 protein. CLC-Nt1 may correspond to the inner membrane anion channel ('IMAC') described previously in animal and plant mitochondria.

Estimates of the location of L-type Ca2+ channels in motoneurons of different sizes: a computational study.

PubMed

Grande, Giovanbattista; Bui, Tuan V; Rose, P Ken

2007-06-01

In the presence of monoamines, L-type Ca(2+) channels on the dendrites of motoneurons contribute to persistent inward currents (PICs) that can amplify synaptic inputs two- to sixfold. However, the exact location of the L-type Ca(2+) channels is controversial, and the importance of the location as a means of regulating the input-output properties of motoneurons is unknown. In this study, we used a computational strategy developed previously to estimate the dendritic location of the L-type Ca(2+) channels and test the hypothesis that the location of L-type Ca(2+) channels varies as a function of motoneuron size. Compartmental models were constructed based on dendritic trees of five motoneurons that ranged in size from small to large. These models were constrained by known differences in PIC activation reported for low- and high-conductance motoneurons and the relationship between somatic PIC threshold and the presence or absence of tonic excitatory or inhibitory synaptic activity. Our simulations suggest that L-type Ca(2+) channels are concentrated in hotspots whose distance from the soma increases with the size of the dendritic tree. Moving the hotspots away from these sites (e.g., using the hotspot locations from large motoneurons on intermediate-sized motoneurons) fails to replicate the shifts in PIC threshold that occur experimentally during tonic excitatory or inhibitory synaptic activity. In models equipped with a size-dependent distribution of L-type Ca(2+) channels, the amplification of synaptic current by PICs depends on motoneuron size and the location of the synaptic input on the dendritic tree.

Self-calibrated multiple-echo acquisition with radial trajectories using the conjugate gradient method (SMART-CG).

PubMed

Jung, Youngkyoo; Samsonov, Alexey A; Bydder, Mark; Block, Walter F

2011-04-01

To remove phase inconsistencies between multiple echoes, an algorithm using a radial acquisition to provide inherent phase and magnitude information for self correction was developed. The information also allows simultaneous support for parallel imaging for multiple coil acquisitions. Without a separate field map acquisition, a phase estimate from each echo in multiple echo train was generated. When using a multiple channel coil, magnitude and phase estimates from each echo provide in vivo coil sensitivities. An algorithm based on the conjugate gradient method uses these estimates to simultaneously remove phase inconsistencies between echoes, and in the case of multiple coil acquisition, simultaneously provides parallel imaging benefits. The algorithm is demonstrated on single channel, multiple channel, and undersampled data. Substantial image quality improvements were demonstrated. Signal dropouts were completely removed and undersampling artifacts were well suppressed. The suggested algorithm is able to remove phase cancellation and undersampling artifacts simultaneously and to improve image quality of multiecho radial imaging, the important technique for fast three-dimensional MRI data acquisition. Copyright © 2011 Wiley-Liss, Inc.

Self-calibrated Multiple-echo Acquisition with Radial Trajectories using the Conjugate Gradient Method (SMART-CG)

PubMed Central

Jung, Youngkyoo; Samsonov, Alexey A; Bydder, Mark; Block, Walter F.

2011-01-01

Purpose To remove phase inconsistencies between multiple echoes, an algorithm using a radial acquisition to provide inherent phase and magnitude information for self correction was developed. The information also allows simultaneous support for parallel imaging for multiple coil acquisitions. Materials and Methods Without a separate field map acquisition, a phase estimate from each echo in multiple echo train was generated. When using a multiple channel coil, magnitude and phase estimates from each echo provide in-vivo coil sensitivities. An algorithm based on the conjugate gradient method uses these estimates to simultaneously remove phase inconsistencies between echoes, and in the case of multiple coil acquisition, simultaneously provides parallel imaging benefits. The algorithm is demonstrated on single channel, multiple channel, and undersampled data. Results Substantial image quality improvements were demonstrated. Signal dropouts were completely removed and undersampling artifacts were well suppressed. Conclusion The suggested algorithm is able to remove phase cancellation and undersampling artifacts simultaneously and to improve image quality of multiecho radial imaging, the important technique for fast 3D MRI data acquisition. PMID:21448967

Efficient Multi-Dimensional Simulation of Quantum Confinement Effects in Advanced MOS Devices

NASA Technical Reports Server (NTRS)

Biegel, Bryan A.; Rafferty, Conor S.; Ancona, Mario G.; Yu, Zhi-Ping

2000-01-01

We investigate the density-gradient (DG) transport model for efficient multi-dimensional simulation of quantum confinement effects in advanced MOS devices. The formulation of the DG model is described as a quantum correction to the classical drift-diffusion model. Quantum confinement effects are shown to be significant in sub-100nm MOSFETs. In thin-oxide MOS capacitors, quantum effects may reduce gate capacitance by 25% or more. As a result, the inclusion or quantum effects in simulations dramatically improves the match between C-V simulations and measurements for oxide thickness down to 2 nm. Significant quantum corrections also occur in the I-V characteristics of short-channel (30 to 100 nm) n-MOSFETs, with current drive reduced by up to 70%. This effect is shown to result from reduced inversion charge due to quantum confinement of electrons in the channel. Also, subthreshold slope is degraded by 15 to 20 mV/decade with the inclusion of quantum effects via the density-gradient model, and short channel effects (in particular, drain-induced barrier lowering) are noticeably increased.

Medusa: A Scalable MR Console Using USB

PubMed Central

Stang, Pascal P.; Conolly, Steven M.; Santos, Juan M.; Pauly, John M.; Scott, Greig C.

2012-01-01

MRI pulse sequence consoles typically employ closed proprietary hardware, software, and interfaces, making difficult any adaptation for innovative experimental technology. Yet MRI systems research is trending to higher channel count receivers, transmitters, gradient/shims, and unique interfaces for interventional applications. Customized console designs are now feasible for researchers with modern electronic components, but high data rates, synchronization, scalability, and cost present important challenges. Implementing large multi-channel MR systems with efficiency and flexibility requires a scalable modular architecture. With Medusa, we propose an open system architecture using the Universal Serial Bus (USB) for scalability, combined with distributed processing and buffering to address the high data rates and strict synchronization required by multi-channel MRI. Medusa uses a modular design concept based on digital synthesizer, receiver, and gradient blocks, in conjunction with fast programmable logic for sampling and synchronization. Medusa is a form of synthetic instrument, being reconfigurable for a variety of medical/scientific instrumentation needs. The Medusa distributed architecture, scalability, and data bandwidth limits are presented, and its flexibility is demonstrated in a variety of novel MRI applications. PMID:21954200

An approximate Riemann solver for real gas parabolized Navier-Stokes equations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Urbano, Annafederica, E-mail: annafederica.urbano@uniroma1.it; Nasuti, Francesco, E-mail: francesco.nasuti@uniroma1.it

2013-01-15

Under specific assumptions, parabolized Navier-Stokes equations are a suitable mean to study channel flows. A special case is that of high pressure flow of real gases in cooling channels where large crosswise gradients of thermophysical properties occur. To solve the parabolized Navier-Stokes equations by a space marching approach, the hyperbolicity of the system of governing equations is obtained, even for very low Mach number flow, by recasting equations such that the streamwise pressure gradient is considered as a source term. For this system of equations an approximate Roe's Riemann solver is developed as the core of a Godunov type finitemore » volume algorithm. The properties of the approximated Riemann solver, which is a modification of Roe's Riemann solver for the parabolized Navier-Stokes equations, are presented and discussed with emphasis given to its original features introduced to handle fluids governed by a generic real gas EoS. Sample solutions are obtained for low Mach number high compressible flows of transcritical methane, heated in straight long channels, to prove the solver ability to describe flows dominated by complex thermodynamic phenomena.« less

Contribution of Cyclic and Pseudo-cyclic Electron Transport to the Formation of Proton Motive Force in Chloroplasts.

PubMed

Shikanai, Toshiharu; Yamamoto, Hiroshi

2017-01-09

Photosynthetic electron transport is coupled to proton translocation across the thylakoid membrane, resulting in the formation of a trans-thylakoid proton gradient (ΔpH) and membrane potential (Δψ). Ion transporters and channels localized to the thylakoid membrane regulate the contribution of each component to the proton motive force (pmf). Although both ΔpH and Δψ contribute to ATP synthesis as pmf, only ΔpH downregulates photosynthetic electron transport via the acidification of the thylakoid lumen by inducing thermal dissipation of excessive absorbed light energy from photosystem II antennae and slowing down of the electron transport through the cytochrome b 6 f complex. To optimize the tradeoff between efficient light energy utilization and protection of both photosystems against photodamage, plants have to regulate the pmf amplitude and its components, ΔpH and Δψ. Cyclic electron transport around photosystem I (PSI) is a major regulator of the pmf amplitude by generating pmf independently of the net production of NADPH by linear electron transport. Chloroplast ATP synthase relaxes pmf for ATP synthesis, and its activity should be finely tuned for maintaining the size of the pmf during steady-state photosynthesis. Pseudo-cyclic electron transport mediated by flavodiiron protein (Flv) forms a large electron sink, which is essential for PSI photoprotection in fluctuating light in cyanobacteria. Flv is conserved from cyanobacteria to gymnosperms but not in angiosperms. The Arabidopsis proton gradient regulation 5 (pgr5) mutant is defective in the main pathway of PSI cyclic electron transport. By introducing Physcomitrella patens genes encoding Flvs, the function of PSI cyclic electron transport was substituted by that of Flv-dependent pseudo-cyclic electron transport. In transgenic plants, the size of the pmf was complemented to the wild-type level but the contribution of ΔpH to the total pmf was lower than that in the wild type. In the pgr5 mutant, the size of the pmf was drastically lowered by the absence of PSI cyclic electron transport. In the mutant, ΔpH occupied the majority of pmf, suggesting the presence of a mechanism for the homeostasis of luminal pH in the light. To avoid damage to photosynthetic electron transport by periods of excess solar energy, plants employ an intricate regulatory network involving alternative electron transport pathways, ion transporters/channels, and pH-dependent mechanisms for downregulating photosynthetic electron transport. Copyright © 2017 The Author. Published by Elsevier Inc. All rights reserved.

A Model based Examination of Conditions for Ignition of Turbidity Currents on Slopes

NASA Astrophysics Data System (ADS)

Mehta, A. J.; Krishna, G.

2009-12-01

Turbidity currents form a major mechanism for the movement of sediment in the natural environment. Self-accelerating turbidity currents over continental slopes are of considerable scientific and engineering interest due to their role as agents for submarine sediment transportation from the shelf to the seabed. Such currents are called ignitive provided they eventually reach a catastrophic state as acceleration results in high sediment loads due to erosion of the sloping bed. A numerical model, which treats the fluid and the particles as two separate phases, is applied to investigate the effects of particle size, initial flow friction velocity and mild bed slope on the ignitive condition. Laboratory experimental data have been included as part of the analysis for qualitative comparison purposes. Ignition for the smallest of the three selected sizes (0.21mm) of medium sand typical of Florida beaches was found to depend on the initial conditions at the head of the slope as determined by the pressure gradient. Bed slope seemed to be of secondary importance. For the two sands with larger grain sizes (0.28mm and 0.35mm) the slope was found to play a more important role when compared to the initial pressure gradient. For a given pressure gradient, increasing the slope increased the likelihood of self-acceleration. It is concluded that in general ignition cannot be defined merely in terms of positive values of the velocity gradient and the sediment flux gradient along the slope. Depending on particle size the initial pressure gradient can also play a role. For the selected initial conditions (grain size, pressure gradient and bed slope), out of the 54 combinations tested, all except three satisfied the Knapp-Bagnold criterion for auto-suspension irrespective of whether the turbid current was ignitive or non-ignitive. In all 54 cases the current was found to erode the bed. Further use of the model will require accommodation of wider ranges of sediment size and bed density, and a thorough verification against experimental data.

Functional response of osteoblasts in functionally gradient titanium alloy mesh arrays processed by 3D additive manufacturing.

PubMed

Nune, K C; Kumar, A; Misra, R D K; Li, S J; Hao, Y L; Yang, R

2017-02-01

We elucidate here the osteoblasts functions and cellular activity in 3D printed interconnected porous architecture of functionally gradient Ti-6Al-4V alloy mesh structures in terms of cell proliferation and growth, distribution of cell nuclei, synthesis of proteins (actin, vinculin, and fibronectin), and calcium deposition. Cell culture studies with pre-osteoblasts indicated that the interconnected porous architecture of functionally gradient mesh arrays was conducive to osteoblast functions. However, there were statistically significant differences in the cellular response depending on the pore size in the functionally gradient structure. The interconnected porous architecture contributed to the distribution of cells from the large pore size (G1) to the small pore size (G3), with consequent synthesis of extracellular matrix and calcium precipitation. The gradient mesh structure significantly impacted cell adhesion and influenced the proliferation stage, such that there was high distribution of cells on struts of the gradient mesh structure. Actin and vinculin showed a significant difference in normalized expression level of protein per cell, which was absent in the case of fibronectin. Osteoblasts present on mesh struts formed a confluent sheet, bridging the pores through numerous cytoplasmic extensions. The gradient mesh structure fabricated by electron beam melting was explored to obtain fundamental insights on cellular activity with respect to osteoblast functions. Copyright © 2016 Elsevier B.V. All rights reserved.

Basic problems and new potentials in monitoring sediment transport using Japanese pipe type geophone

NASA Astrophysics Data System (ADS)

Sakajo, Saiichi

2016-04-01

The authors have conducted a lot of series of monitoring of sediment transport by pipe type geophone in a model hydrological channel with various gradients and water discharge, using the various size of particles from 2 to 21 mm in the diameter. In the case of casting soils particle by particle into the water channel, 1,000 test cases were conducted. In the case of casting all soils at a breath into the water channel, 100 test cases were conducted. The all test results were totally analyzed by the conventional method, with visible judgement by video pictures. Then several important basic problems were found in estimating the volume and particle distributions by the conventional method, which was not found in the past similar studies. It was because the past studies did not consider the types of collisions between sediment particle and pipe. Based on these experiments, the authors have firstly implemented this idea into the old formula to estimate the amount of sediment transport. In the formula, two factors of 1) the rate of sensing in a single collision and 2) the rate of collided particles to a cast all soil particles were concretely considered. The parameters of these factors could be determined from the experimental results and it was found that the obtained formula could estimate grain size distribution. In this paper, they explain the prototype formula to estimate a set of volume and distribution of sediment transport. Another finding in this study is to propose a single collision as a river index to recognize its characteristics of sediment transport. This result could characterize the risk ranking of sediment transport in the rivers and mudflow in the mountainous rivers. Furthermore, in this paper the authors explain how the preciseness of the pipe geophone to sense the smaller sediment particles shall be improved, which has never been able to be sensed.

Hydrocarbon traps within a seismic sequence framework, Stevens turbidites, southern San Joaquin Valley, CA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hewlett, J.S.; Jordan, D.W.; Crebs, T.J.

1991-02-01

Interpretation of the seismic sequence framework and log and lithologic character of upper Miocene Stevens turbidites on the Bakersfield arch has led to an improved understanding of the expression of stratigraphic trapping that should reduce exploration risk in the basin, and may aid exploration efforts in similar sand-rich systems globally. These deepwater sandstones are contained within three lowstand turbidite systems (LTS) that were deposited in a narrow deepwater basin adjacent to the ancestral Sierra Nevada. the oldest LTS, the Coulter, was transported through several submarine canyons incised into the Fruitvale Shale. In contrast, numerous smaller scale erosional features located onmore » the high-relief slopes of the highstand Santa Margarita deltas, fed the overlying Gosford and Bellevue LTS. The systems consist of sandy, high-density (primarily) and low-density turbidites that were deposited within channel-lobe complexes. On the arch, 472 MMBO and 1.3 tcf have been produced from four seismically detectable traps with strong stratigraphic components: (1) sandstone permeability changes within turbidite wedges that thin rapidly onto structure (2) confined (channelized) turbidites that lap out on a structure (e.g., F-1 sand, South Coles levee), (3) channelized turbidites that pinch out within slope gullies, and (4) depositional compaction anticlines occurring in conjunction with low-gradient regional structure. Condensed section sediments form regional and reservoir-scale seals. Rapid lateral facies changes and grain size variations provide additional seal facies.« less

Where and why hyporheic exchange is important: Inferences from a parsimonious, physically-based river network model

NASA Astrophysics Data System (ADS)

Gomez-Velez, J. D.; Harvey, J. W.

2014-12-01

Hyporheic exchange has been hypothesized to have basin-scale consequences; however, predictions throughout river networks are limited by available geomorphic and hydrogeologic data as well as models that can analyze and aggregate hyporheic exchange flows across large spatial scales. We developed a parsimonious but physically-based model of hyporheic flow for application in large river basins: Networks with EXchange and Subsurface Storage (NEXSS). At the core of NEXSS is a characterization of the channel geometry, geomorphic features, and related hydraulic drivers based on scaling equations from the literature and readily accessible information such as river discharge, bankfull width, median grain size, sinuosity, channel slope, and regional groundwater gradients. Multi-scale hyporheic flow is computed based on combining simple but powerful analytical and numerical expressions that have been previously published. We applied NEXSS across a broad range of geomorphic diversity in river reaches and synthetic river networks. NEXSS demonstrates that vertical exchange beneath submerged bedforms dominates hyporheic fluxes and turnover rates along the river corridor. Moreover, the hyporheic zone's potential for biogeochemical transformations is comparable across stream orders, but the abundance of lower-order channels results in a considerably higher cumulative effect for low-order streams. Thus, vertical exchange beneath submerged bedforms has more potential for biogeochemical transformations than lateral exchange beneath banks, although lateral exchange through meanders may be important in large rivers. These results have implications for predicting outcomes of river and basin management practices.

On Fully Developed Channel Flows: Some Solutions and Limitations, and Effects of Compressibility, Variable Properties, and Body Forces

NASA Technical Reports Server (NTRS)

Maslen, Stephen H.

1959-01-01

An examination of the effects of compressibility, variable properties, and body forces on fully developed laminar flow has indicated several limitations on such streams. In the absence of a pressure gradient, but presence of a body force (e.g., gravity), an exact fully developed gas flow results. For a liquid this follows also for the case of a constant streamwise pressure gradient. These motions are exact in the sense of a Couette flow. In the liquid case two solutions (not a new result) can occur for the same boundary conditions. An approximate analytic solution was found which agrees closely with machine calculations.In the case of approximately exact flows, it turns out that for large temperature variations across the channel the effects of convection (due to, say, a wall temperature gradient) and frictional heating must be negligible. In such a case the energy and momentum equations are separated, and the solutions are readily obtained. If the temperature variations are small, then both convection effects and frictional heating can consistently be considered. This case becomes the constant-property incompressible case (or quasi-incompressible case for free-convection flows) considered by many authors. Finally there is a brief discussion of cases wherein streamwise variations of all quantities are allowed but only a such form that independent variables are separable. For the case where the streamwise velocity varies inversely as the square root distance along the channel a solution is given.

First gas-phase metallicity gradients of 0.1 ≲ z ≲ 0.8 galaxies with MUSE

NASA Astrophysics Data System (ADS)

Carton, David; Brinchmann, Jarle; Contini, Thierry; Epinat, Benoît; Finley, Hayley; Richard, Johan; Patrício, Vera; Schaye, Joop; Nanayakkara, Themiya; Weilbacher, Peter M.; Wisotzki, Lutz

2018-05-01

Galaxies at low-redshift typically possess negative gas-phase metallicity gradients (centres more metal-rich than their outskirts). Whereas, it is not uncommon to observe positive metallicity gradients in higher-redshift galaxies (z ≳ 0.6). Bridging these epochs, we present gas-phase metallicity gradients of 84 star-forming galaxies between 0.08 < z < 0.84. Using the galaxies with reliably determined metallicity gradients, we measure the median metallicity gradient to be negative (-0.039^{+0.007}_{-0.009} dex/kpc). Underlying this, however, is significant scatter: (8 ± 3)% [7] of galaxies have significantly positive metallicity gradients, (38 ± 5)% [32] have significantly negative gradients, (31 ± 5)% [26] have gradients consistent with being flat. (The remaining (23 ± 5)% [19] have unreliable gradient estimates.) We notice a slight trend for a more negative metallicity gradient with both increasing stellar mass and increasing star formation rate (SFR). However, given the potential redshift and size selection effects, we do not consider these trends to be significant. Indeed, once we normalize the SFR relative to that of the main sequence, we do not observe any trend between the metallicity gradient and the normalized SFR. This is contrary to recent studies of galaxies at similar and higher redshifts. We do, however, identify a novel trend between the metallicity gradient of a galaxy and its size. Small galaxies (rd < 3 kpc) present a large spread in observed metallicity gradients (both negative and positive gradients). In contrast, we find no large galaxies (rd > 3 kpc) with positive metallicity gradients, and overall there is less scatter in the metallicity gradient amongst the large galaxies. These large (well-evolved) galaxies may be analogues of present-day galaxies, which also show a common negative metallicity gradient.

A gradient model of vegetation and climate utilizing NOAA satellite imagery. Phase 1: Texas transect

NASA Technical Reports Server (NTRS)

Greegor, D.; Norwine, J. (Principal Investigator)

1981-01-01

A climatological model/variable termed the sponge (a measure of moisture availability based on daily temperature maxima and minima, and precipitation) was tested for potential biogeograhic, ecological, and agro-climatological applications. Results, depicted in tabular and graphic form, suggest that, as generalized climatic index, sponge is particularly appropriate for large-area and global vegetation monitoring. The feasibility of utilizing NOAA/AVHRR data for vegetation classification was investigated and a vegetation gradient model that utilizes sponge and AVHRR data was initiated. Along an east-west Texas gradient, vegetation, sponge, and AVHRR pixel data (channels 1 and 2) were obtained for 12 locations. The normalized difference values for the AVHRR data when plotted against vegetation characteristics (biomass, net productivity, leaf area) and sponge values along the Texas gradient suggest that a multivariate gradient model incorporating AVHRR and sponge data may indeed be useful in global vegetation stratification and monitoring.

Enlargement and contracture of C2-ceramide channels.

PubMed

Siskind, Leah J; Davoody, Amirparviz; Lewin, Naomi; Marshall, Stephanie; Colombini, Marco

2003-09-01

Ceramides are known to play a major regulatory role in apoptosis by inducing cytochrome c release from mitochondria. We have previously reported that ceramide, but not dihydroceramide, forms large and stable channels in phospholipid membranes and outer membranes of isolated mitochondria. C(2)-ceramide channel formation is characterized by conductance increments ranging from <1 to >200 nS. These conductance increments often represent the enlargement and contracture of channels rather than the opening and closure of independent channels. Enlargement is supported by the observation that many small conductance increments can lead to a large decrement. Also the initial conductances favor cations, but this selectivity drops dramatically with increasing total conductance. La(+3) causes rapid ceramide channel disassembly in a manner indicative of large conducting structures. These channels have a propensity to contract by a defined size (often multiples of 4 nS) indicating the formation of cylindrical channels with preferred diameters rather than a continuum of sizes. The results are consistent with ceramides forming barrel-stave channels whose size can change by loss or insertion of multiple ceramide columns.

Enlargement and Contracture of C2-Ceramide Channels

PubMed Central

Siskind, Leah J.; Davoody, Amirparviz; Lewin, Naomi; Marshall, Stephanie; Colombini, Marco

2003-01-01

Ceramides are known to play a major regulatory role in apoptosis by inducing cytochrome c release from mitochondria. We have previously reported that ceramide, but not dihydroceramide, forms large and stable channels in phospholipid membranes and outer membranes of isolated mitochondria. C2-ceramide channel formation is characterized by conductance increments ranging from <1 to >200 nS. These conductance increments often represent the enlargement and contracture of channels rather than the opening and closure of independent channels. Enlargement is supported by the observation that many small conductance increments can lead to a large decrement. Also the initial conductances favor cations, but this selectivity drops dramatically with increasing total conductance. La+3 causes rapid ceramide channel disassembly in a manner indicative of large conducting structures. These channels have a propensity to contract by a defined size (often multiples of 4 nS) indicating the formation of cylindrical channels with preferred diameters rather than a continuum of sizes. The results are consistent with ceramides forming barrel-stave channels whose size can change by loss or insertion of multiple ceramide columns. PMID:12944273

Measurement of Transverse Wakefields Induced by a Misaligned Positron Bunch in a Hollow Channel Plasma Accelerator.

PubMed

Lindstrøm, C A; Adli, E; Allen, J M; An, W; Beekman, C; Clarke, C I; Clayton, C E; Corde, S; Doche, A; Frederico, J; Gessner, S J; Green, S Z; Hogan, M J; Joshi, C; Litos, M; Lu, W; Marsh, K A; Mori, W B; O'Shea, B D; Vafaei-Najafabadi, N; Yakimenko, V

2018-03-23

Hollow channel plasma wakefield acceleration is a proposed method to provide high acceleration gradients for electrons and positrons alike: a key to future lepton colliders. However, beams which are misaligned from the channel axis induce strong transverse wakefields, deflecting beams and reducing the collider luminosity. This undesirable consequence sets a tight constraint on the alignment accuracy of the beam propagating through the channel. Direct measurements of beam misalignment-induced transverse wakefields are therefore essential for designing mitigation strategies. We present the first quantitative measurements of transverse wakefields in a hollow plasma channel, induced by an off-axis 20 GeV positron bunch, and measured with another 20 GeV lower charge trailing positron probe bunch. The measurements are largely consistent with theory.

Measurement of Transverse Wakefields Induced by a Misaligned Positron Bunch in a Hollow Channel Plasma Accelerator

NASA Astrophysics Data System (ADS)

Lindstrøm, C. A.; Adli, E.; Allen, J. M.; An, W.; Beekman, C.; Clarke, C. I.; Clayton, C. E.; Corde, S.; Doche, A.; Frederico, J.; Gessner, S. J.; Green, S. Z.; Hogan, M. J.; Joshi, C.; Litos, M.; Lu, W.; Marsh, K. A.; Mori, W. B.; O'Shea, B. D.; Vafaei-Najafabadi, N.; Yakimenko, V.

2018-03-01

Hollow channel plasma wakefield acceleration is a proposed method to provide high acceleration gradients for electrons and positrons alike: a key to future lepton colliders. However, beams which are misaligned from the channel axis induce strong transverse wakefields, deflecting beams and reducing the collider luminosity. This undesirable consequence sets a tight constraint on the alignment accuracy of the beam propagating through the channel. Direct measurements of beam misalignment-induced transverse wakefields are therefore essential for designing mitigation strategies. We present the first quantitative measurements of transverse wakefields in a hollow plasma channel, induced by an off-axis 20 GeV positron bunch, and measured with another 20 GeV lower charge trailing positron probe bunch. The measurements are largely consistent with theory.

Image Motion Detection And Estimation: The Modified Spatio-Temporal Gradient Scheme

NASA Astrophysics Data System (ADS)

Hsin, Cheng-Ho; Inigo, Rafael M.

1990-03-01

The detection and estimation of motion are generally involved in computing a velocity field of time-varying images. A completely new modified spatio-temporal gradient scheme to determine motion is proposed. This is derived by using gradient methods and properties of biological vision. A set of general constraints is proposed to derive motion constraint equations. The constraints are that the second directional derivatives of image intensity at an edge point in the smoothed image will be constant at times t and t+L . This scheme basically has two stages: spatio-temporal filtering, and velocity estimation. Initially, image sequences are processed by a set of oriented spatio-temporal filters which are designed using a Gaussian derivative model. The velocity is then estimated for these filtered image sequences based on the gradient approach. From a computational stand point, this scheme offers at least three advantages over current methods. The greatest advantage of the modified spatio-temporal gradient scheme over the traditional ones is that an infinite number of motion constraint equations are derived instead of only one. Therefore, it solves the aperture problem without requiring any additional assumptions and is simply a local process. The second advantage is that because of the spatio-temporal filtering, the direct computation of image gradients (discrete derivatives) is avoided. Therefore the error in gradients measurement is reduced significantly. The third advantage is that during the processing of motion detection and estimation algorithm, image features (edges) are produced concurrently with motion information. The reliable range of detected velocity is determined by parameters of the oriented spatio-temporal filters. Knowing the velocity sensitivity of a single motion detection channel, a multiple-channel mechanism for estimating image velocity, seldom addressed by other motion schemes in machine vision, can be constructed by appropriately choosing and combining different sets of parameters. By applying this mechanism, a great range of velocity can be detected. The scheme has been tested for both synthetic and real images. The results of simulations are very satisfactory.

Simulations of Flame Acceleration and DDT in Mixture Composition Gradients

NASA Astrophysics Data System (ADS)

Zheng, Weilin; Kaplan, Carolyn; Houim, Ryan; Oran, Elaine

2017-11-01

Unsteady, multidimensional, fully compressible numerical simulations of methane-air in an obstructed channel with spatial gradients in equivalence ratios have been carried to determine the effects of the gradients on flame acceleration and transition to detonation. Results for gradients perpendicular to the propagation direction were considered here. A calibrated, optimized chemical-diffusive model that reproduces correct flame and detonation properties for methane-air over a range of equivalence ratios was derived from a combination of a genetic algorithm with a Nelder-Mead optimization scheme. Inhomogeneous mixtures of methane-air resulted in slower flame acceleration and longer distance to DDT. Detonations were more likely to decouple into a flame and a shock under sharper concentration gradients. Detailed analyses of temperature and equivalence ratio illustrated that vertical gradients can greatly affect the formation of hot spots that initiate detonation by changing the strength of leading shock wave and local equivalence ratio near the base of obstacles. This work is supported by the Alpha Foundation (Grant No. AFC215-20).

Multiscale interaction between a large scale magnetic island and small scale turbulence

NASA Astrophysics Data System (ADS)

Choi, M. J.; Kim, J.; Kwon, J.-M.; Park, H. K.; In, Y.; Lee, W.; Lee, K. D.; Yun, G. S.; Lee, J.; Kim, M.; Ko, W.-H.; Lee, J. H.; Park, Y. S.; Na, Y.-S.; Luhmann, N. C., Jr.; Park, B. H.

2017-12-01

Multiscale interaction between the magnetic island and turbulence has been demonstrated through simultaneous two-dimensional measurements of turbulence and temperature and flow profiles. The magnetic island and turbulence can mutually interact via coupling between the electron temperature (T e ) gradient, the T e turbulence, and the poloidal flow. The T e gradient altered by the magnetic island steepens outside and flattens inside the island. The T e turbulence can appear in increased T e gradient regions. The combined effects of the T e gradient and the poloidal flow shear determines the two-dimensional distribution of the T e turbulence. When the poloidal vortex flow forms, it can maintain the steepest T e gradient and the magnetic island acts more like an electron heat transport barrier. Interestingly, when the T e gradient, the T e turbulence, and the vortex flow shear increase beyond critical levels, the magnetic island turns into a fast electron heat transport channel, which directly leads to the minor disruption.

Impact of Annular Size on Outcomes After Surgical or Transcatheter Aortic Valve Replacement.

PubMed

Deeb, G Michael; Chetcuti, Stanley J; Yakubov, Steven J; Patel, Himanshu J; Grossman, P Michael; Kleiman, Neal S; Heiser, John; Merhi, William; Zorn, George L; Tadros, Peter N; Petrossian, George; Robinson, Newell; Mumtaz, Mubashir; Gleason, Thomas G; Huang, Jian; Conte, John V; Popma, Jeffrey J; Reardon, Michael J

2018-04-01

This analysis evaluates the relationship of annular size to hemodynamics and the incidence of prosthesis-patient mismatch (PPM) in surgical aortic valve replacement (SAVR) and transcatheter aortic valve replacement (TAVR) patients. The CoreValve US Pivotal High Risk Trial, described previously, compared TAVR using a self-expanding valve with SAVR. Multislice computed tomography was used to categorize TAVR and SAVR subjects according to annular perimeter-derived diameter: large (≥26 mm), medium (23 to <26 mm), and small (<23 mm). Hemodynamics, PPM, and clinical outcomes were assessed. At all postprocedure visits, mean gradients were significantly lower for TAVR compared with SAVR in small and medium size annuli (p < 0.001). Annular size was significantly associated with mean gradient after SAVR, with small annuli having the highest gradients (p < 0.05 at all timepoints); gradients were similar across all annular sizes after TAVR. In subjects receiving SAVR, the frequency of PPM was significantly associated with annular size, with small annuli having the greatest incidence. No difference in PPM incidence by annular sizing was observed with TAVR. In addition, TAVR subjects had significantly less PPM than SAVR subjects in small and medium annuli (p < 0.001), with no difference in the incidence of PPM between TAVR and SAVR in large annuli (p = 0.10). Annular size has a significant effect on hemodynamics and the incidence of PPM in SAVR subjects, not observed in TAVR subjects. With respect to annular size, TAVR results in better hemodynamics and less PPM for annuli less than 26 mm and should be strongly considered when choosing a tissue valve for small and medium size annuli. Copyright © 2018 The Society of Thoracic Surgeons. Published by Elsevier Inc. All rights reserved.

Assembly of the epithelial Na+ channel evaluated using sucrose gradient sedimentation analysis.

PubMed

Cheng, C; Prince, L S; Snyder, P M; Welsh, M J

1998-08-28

Three subunits, alpha, beta, and gamma, contribute to the formation of the epithelial Na+ channel. To investigate the oligomeric assembly of the channel complex, we used sucrose gradient sedimentation analysis to determine the sedimentation properties of individual subunits and heteromultimers comprised of multiple subunits. When the alpha subunit was expressed alone, it first formed an oligomeric complex with a sedimentation coefficient of 11 S, and then generated a higher order multimer of 25 S. In contrast, individual beta and gamma subunits predominately assembled into 11 S complexes. We obtained similar results with expression in cells and in vitro. When we co-expressed beta with alpha or with alpha plus gamma, the beta subunit assembled into a 25 S complex. Glycosylation of the alpha subunit was not required for assembly into a 25 S complex. We found that the alpha subunit formed intra-chain disulfide bonds. Although such bonds were not required to generate an oligomeric complex, under nonreducing conditions the alpha subunit formed a complex that migrated more homogeneously at 25 S. This suggests that intra-chain disulfide bonds may stabilize the complex. These data suggest that the epithelial Na+ channel subunits form high order oligomeric complexes and that the alpha subunit contains the information that facilitates such formation. Interestingly, the ability of the alpha, but not the beta or gamma, subunit to assemble into a 25 S homomeric complex correlates with the ability of these subunits to generate functional channels when expressed alone.

River banks and channel axis curvature: Effects on the longitudinal dispersion in alluvial rivers

NASA Astrophysics Data System (ADS)

Lanzoni, Stefano; Ferdousi, Amena; Tambroni, Nicoletta

2018-03-01

The fate and transport of soluble contaminants released in natural streams are strongly dependent on the spatial variations of the flow field and of the bed topography. These variations are essentially related to the presence of the channel banks and to the planform configuration of the channel. Large velocity gradients arise near to the channel banks, where the flow depth decreases to zero. Moreover, single thread alluvial rivers are seldom straight, and usually exhibit meandering planforms and a bed topography that deviates from the plane configuration. Channel axis curvature and movable bed deformations drive secondary helical currents which enhance both cross sectional velocity gradients and transverse mixing, thus crucially influencing longitudinal dispersion. The present contribution sets up a rational framework which, assuming mild sloping banks and taking advantage of the weakly meandering character often exhibited by natural streams, leads to an analytical estimate of the contribution to longitudinal dispersion associated with spatial non-uniformities of the flow field. The resulting relationship stems from a physics-based modeling of the flow in natural rivers, and expresses the bend averaged longitudinal dispersion coefficient as a function of the relevant hydraulic and morphologic parameters. The treatment of the problem is river specific, since it relies on an explicit spatial description, although linearized, of the flow field that establishes in the investigated river. Comparison with field data available from tracer tests supports the robustness of the proposed framework, given also the complexity of the processes that affect dispersion dynamics in real streams.

Land-ocean gradient in haline stratification and its effects on plankton dynamics and trophic carbon fluxes in Chilean Patagonian fjords (47-50°S)

NASA Astrophysics Data System (ADS)

González, H. E.; Castro, L. R.; Daneri, G.; Iriarte, J. L.; Silva, N.; Tapia, F.; Teca, E.; Vargas, C. A.

2013-12-01

Patagonian fjord systems, and in particular the fjords and channels associated with the Baker/Pascua Rivers, are currently under conspicuous natural and anthropogenic perturbations. These systems display very high variability, where limnetic and oceanic features overlap generating strong vertical and horizontal physicochemical gradients. The CIMAR 14-Fiordos cruise was conducted in the Chilean fjords located between 47° and 50°S during the spring (October-November) of 2008. The main objectives were to study vertical and horizontal gradients in physical, chemical and biological characteristics of the water column, and to assess plankton dynamics and trophic carbon fluxes in the fjords and channels of central-south Patagonia. The water column was strongly stratified, with a pycnocline at ca. 20 m depth separating a surface layer of silicic acid-rich freshwater discharged by rivers, from the underlying nitrate- and orthophosphate-rich Subantarctic waters. The outflows from the Baker and Pascua Rivers, which range annually between 500 and 1500 m3 s-1, generate the strong land-ocean gradient in salinity (1-32 psu) and inorganic nutrient concentrations (2-8 and 2-24 μM in nitrate and silicic-acid, respectively) we observed along the Baker Fjord. The POC:chl-a ratio fluctuated from 1087 near the fjord’s head to 175 at its oceanic end in the Penas Gulf. This change was mainly due to an increase in diatom dominance and a concurrent decrease in allochthonous POC towards the ocean. Depth-integrated net primary production (NPP) and bacterial secondary production (BSP) fluctuated between 49 and 1215 and 36 and 150 mg C m-2 d-1, respectively, with higher rates in oceanic waters. At a time series station located close to the Baker River mouth, the average NPP was lower (average 360 mg C m-2 d-1) than at more oceanic stations (average 1063 mg C m-2 d-1), and numerically dominated (45%) by the picoplankton (<2 μm) and nanoplankton (2-20 μm) size fractions. The high average vertical carbon flux (234 mg m-2 d-1) and high export production (65% of the NPP) support the idea that Patagonian fjords may behave as a net sink for CO2 during the productive (spring) season. Trophic fluxes near the head of the fjords, with oligotrophic low-salinity waters, were dominated by heterotrophic nanoflagellates (HNF) and small copepods (52 mg C m-2 d-1, each), suggesting that the microbial food web is the main trophic pathway in these environments.

Ion flux through membrane channels--an enhanced algorithm for the Poisson-Nernst-Planck model.

PubMed

Dyrka, Witold; Augousti, Andy T; Kotulska, Malgorzata

2008-09-01

A novel algorithmic scheme for numerical solution of the 3D Poisson-Nernst-Planck model is proposed. The algorithmic improvements are universal and independent of the detailed physical model. They include three major steps: an adjustable gradient-based step value, an adjustable relaxation coefficient, and an optimized segmentation of the modeled space. The enhanced algorithm significantly accelerates the speed of computation and reduces the computational demands. The theoretical model was tested on a regular artificial channel and validated on a real protein channel-alpha-hemolysin, proving its efficiency. (c) 2008 Wiley Periodicals, Inc.

Enzymatic activity in the surface microlayer and subsurface water in the harbour channel

NASA Astrophysics Data System (ADS)

Perliński, Piotr; Mudryk, Zbigniew J.; Antonowicz, Józef

2017-09-01

Hydrolytic activity of eight extracellular enzymes was determined spectrofluorimetric method in the surface microlayer and subsurface water in the harbour channel in Ustka. The ranking order of the potential enzyme activity rates in the studied water layers was as follows: lipase > phosphatase > aminopeptidase > β-glucosidase > α-glucosidase > xylanase > cellulase > chitinase. The level of activity of all studied hydrolases was higher in the surface microlayer than subsurface water. No clear gradients in the level of enzymatic activity were determined along the horizontal profile of the studied channel. Activity of extracellular enzymes was strongly influenced by the season.

Currents through Hv1 channels deplete protons in their vicinity.

PubMed

De-la-Rosa, Víctor; Suárez-Delgado, Esteban; Rangel-Yescas, Gisela E; Islas, León D

2016-02-01

Proton channels have evolved to provide a pH regulatory mechanism, affording the extrusion of protons from the cytoplasm at all membrane potentials. Previous evidence has suggested that channel-mediated acid extrusion could significantly change the local concentration of protons in the vicinity of the channel. In this work, we directly measure the proton depletion caused by activation of Hv1 proton channels using patch-clamp fluorometry recordings from channels labeled with the Venus fluorescent protein at intracellular domains. The fluorescence of the Venus protein is very sensitive to pH, thus behaving as a genetically encoded sensor of local pH. Eliciting outward proton currents increases the fluorescence intensity of Venus. This dequenching is related to the magnitude of the current and not to channel gating and is dependent on the pH gradient. Our results provide direct evidence of local proton depletion caused by flux through the proton-selective channel. © 2016 De-la-Rosa et al.

Application of gradient elasticity to benchmark problems of beam vibrations

NASA Astrophysics Data System (ADS)

Kateb, K. M.; Almitani, K. H.; Alnefaie, K. A.; Abu-Hamdeh, N. H.; Papadopoulos, P.; Askes, H.; Aifantis, E. C.

2016-04-01

The gradient approach, specifically gradient elasticity theory, is adopted to revisit certain typical configurations on mechanical vibrations. New results on size effects and scale-dependent behavior not captured by classical elasticity are derived, aiming at illustrating the usefulness of this approach to applications in advanced technologies. In particular, elastic prismatic straight beams in bending are discussed using two different governing equations: the gradient elasticity bending moment equation (fourth order) and the gradient elasticity deflection equation (sixth order). Different boundary/support conditions are examined. One problem considers the free vibrations of a cantilever beam loaded by an end force. A second problem is concerned with a simply supported beam disturbed by a concentrated force in the middle of the beam. Both problems are solved analytically. Exact free vibration frequencies and mode shapes are derived and presented. The difference between the gradient elasticity solution and its classical counterpart is revealed. The size ratio c/L (c denotes internal length and L is the length of the beam) induces significant effects on vibration frequencies. For both beam configurations, it turns out that as the ratio c/L increases, the vibration frequencies decrease, a fact which implies lower beam stiffness. Numerical examples show this behavior explicitly and recover the classical vibration behavior for vanishing size ratio c/L.

Summer habitat use by Columbia River redband trout in the Kootenai River drainage, Montana

USGS Publications Warehouse

Muhlfeld, Clint C.; Bennett, David H.

2001-01-01

The reported decline in the abundance, distribution, and genetic diversity of Columbia River redband trout Oncorhynchus mykiss gairdneri (a rainbow trout subspecies) has prompted fisheries managers to investigate their habitat requirements, identify critical habitat, and develop effective conservation and recovery programs. We analyzed the microhabitat, mesohabitat, and macrohabitat use and distribution of Columbia River redband trout by means of snorkel surveys in two watersheds in the Kootenai River drainage, Montana and Idaho, during the summers of 1997 and 1998. Juvenile (36–125 mm total length, TL) and adult (>=126 mm TL) fish preferred deep microhabitats (>=0.4 m) with low to moderate velocities (<=0.5 m/s) adjacent to the thalweg. Conversely, age-0 (<=35 mm) fish selected slow water (<=0.1 m/s) and shallow depths (<=0.2 m) located in lateral areas of the channel. Age-0, juvenile, and adult fish strongly selected pool mesohabitats and avoided riffles; juveniles and adults generally used runs in proportion to their availability. At the macrohabitat scale, density of Columbia River redband trout (35 mm) was positively related to the abundance of pools and negatively related to stream gradient. The pool: riffle ratio, gradient, and stream size combined accounted for 80% of the variation in density among 23 stream reaches in five streams. Our results demonstrate that low-gradient, medium-elevation reaches with an abundance of complex pools are critical areas for the production of Columbia River redband trout. These data will be useful in assessing the impacts of land-use practices on the remaining populations and may assist with habitat restoration or enhancement efforts.

Evidence of counter-gradient growth in western pond turtles (Actinemys marmorata) across thermal gradients

USGS Publications Warehouse

Snover, Melissa; Adams, Michael J.; Ashton, Donald T.; Bettaso, Jamie B.; Welsh, Hartwell H.

2015-01-01

Given the importance of size and age at reproductive maturity to population dynamics, this information on counter-gradient growth will improve our ability to understand and predict the consequences of dam operations for downstream turtle populations.

Integrated geophysical survey in defining subsidence features on a golf course

USGS Publications Warehouse

Xia, J.; Miller, R.D.

2007-01-01

Subsidence was observed at several places on the Salina Municipal Golf Course in areas known to be built over a landfill in Salina, Kansas. High-resolution magnetic survey (???5400 m2), multi-channel electrical resistivity profiling (three 154 m lines) and microgravity profiling (23 gravity-station values) were performed on a subsidence site (Green 16) to aid in determining boundaries and density deficiency of the landfill in the vicinity of the subsidence. Horizontal boundaries of the landfill were confidently defined by both magnetic anomalies and the pseudo-vertical gradient of total field magnetic anomalies. Furthermore, the pseudo-vertical gradient of magnetic anomalies presented a unique anomaly at Green 16, which provided a criterion for predicting other spots with subsidence potential using the same gradient property. Results of multi-channel electrical resistivity profiling (ERP) suggested the bottom limit of the landfill at Green 16 was around 21 m below the ground surface based on the vertical gradient of electric resistivity and a priori information on the depth of the landfill. ERP results also outlined several possible landfill bodies based on their low resistivity values. Microgravity results suggested a -0.14 g cm-3 density deficiency at Green 16 that could equate to future surface subsidence of as much as 1.5 m due to gradual compaction. ?? 2007 Nanjing Institute of Geophysical Prospecting.

A hybrid microfluidic-vacuum device for direct interfacing with conventional cell culture methods

PubMed Central

Chung, Bong Geun; Park, Jeong Won; Hu, Jia Sheng; Huang, Carlos; Monuki, Edwin S; Jeon, Noo Li

2007-01-01

Background Microfluidics is an enabling technology with a number of advantages over traditional tissue culture methods when precise control of cellular microenvironment is required. However, there are a number of practical and technical limitations that impede wider implementation in routine biomedical research. Specialized equipment and protocols required for fabrication and setting up microfluidic experiments present hurdles for routine use by most biology laboratories. Results We have developed and validated a novel microfluidic device that can directly interface with conventional tissue culture methods to generate and maintain controlled soluble environments in a Petri dish. It incorporates separate sets of fluidic channels and vacuum networks on a single device that allows reversible application of microfluidic gradients onto wet cell culture surfaces. Stable, precise concentration gradients of soluble factors were generated using simple microfluidic channels that were attached to a perfusion system. We successfully demonstrated real-time optical live/dead cell imaging of neural stem cells exposed to a hydrogen peroxide gradient and chemotaxis of metastatic breast cancer cells in a growth factor gradient. Conclusion This paper describes the design and application of a versatile microfluidic device that can directly interface with conventional cell culture methods. This platform provides a simple yet versatile tool for incorporating the advantages of a microfluidic approach to biological assays without changing established tissue culture protocols. PMID:17883868

Passive water flows driven across the isolated rabbit ileum by osmotic, hydrostatic and electrical gradients.

PubMed Central

Naftalin, R J; Tripathi, S

1985-01-01

Water flows generated by osmotic and hydrostatic pressure and electrical currents were measured in sheets of isolated rabbit ileum at 20 degrees C. Flows across the mucosal and serosal surfaces were monitored continuously by simultaneous measurement of tissue volume change (with an optical lever) and net water flows across one surface of the tissue (with a capacitance transducer). Osmotic gradients were imposed across the mucosal and serosal surfaces of the tissue separately, using probe molecules of various sizes from ethanediol (68 Da) to dextrans (161 000 Da). Flows across each surface were elicited with very short delay. The magnitudes of the flows were proportional to the osmotic gradient and related to the size of the probe molecule. Osmotic flow across the mucosal surface was associated with streaming potentials which were due to electro-osmotic water flow. The mucosal surface is a heteroporous barrier with narrow (0.7 nm radius, Lp (hydraulic conductivity) = (7.6 +/- 1.6) X 10(-9) cm s-1 cmH2O-1) cation-selective channels in parallel with wide neutral pores (ca. 6.5 nm radius, Lp = (2.3 +/- 0.2) X 10(-7) cm s-1 cmH2O-1) which admit large pressure-driven backflows from the submucosa to the lumen. There is additional evidence for a further set of narrow electroneutral pores less than 0.4 nm radius with Lp less than 7 X 10(-9) cm s-1 cmH2O-1. The serosal surface has neutral pores of uniform radius (ca. 6.5 nm), Lp = (7.6 +/- 1.6) X 10(-8) cm s-1 cmH2O-1. Hypertonic serosal solutions (100 mM-sucrose) cause osmotic transfer of fluid from isotonic mucosal solutions into the submucosa, expand it, and elevate the tissue pressure to 19.6 +/- 3.2 cmH2O (n = 4). Conversely, hypertonic mucosal solutions (100 mM-sucrose) draw fluid out of the submucosa in the presence of isotonic serosal solutions, collapse the submucosa, and lower the tissue pressure to -87.7 +/- 4.6 cmH2O (n = 5). Water flows coupled to cation movement could be generated across the mucosal surface in both directions by brief direct current pulses. The short latency of onset and cessation of flow (less than 2 s), absence of polarization potentials, and high electro-osmotic coefficients (range 50-520 mol water F-1), together with the presence of streaming potentials during osmotically generated water flows indicate electro-osmotic water flow through hydrated channels in the tight junctions and/or lateral intercellular spaces.(ABSTRACT TRUNCATED AT 400 WORDS) PMID:3989717

Subunit stoichiometry of human muscle chloride channels.

PubMed

Fahlke, C; Knittle, T; Gurnett, C A; Campbell, K P; George, A L

1997-01-01

Voltage-gated Cl- channels belonging to the ClC family appear to function as homomultimers, but the number of subunits needed to form a functional channel is controversial. To determine subunit stoichiometry, we constructed dimeric human skeletal muscle Cl- channels in which one subunit was tagged by a mutation (D136G) that causes profound changes in voltage-dependent gating. Sucrose-density gradient centrifugation experiments indicate that both monomeric and dimeric hClC-1 channels in their native configurations exhibit similar sedimentation properties consistent with a multimeric complex having a molecular mass of a dimer. Expression of the heterodimeric channel in a mammalian cell line results in a homogenous population of Cl- channels exhibiting novel gating properties that are best explained by the formation of heteromultimeric channels with an even number of subunits. Heteromultimeric channels were not evident in cells cotransfected with homodimeric WT-WT and D136G-D136G constructs excluding the possibility that functional hClC-1 channels are assembled from more than two subunits. These results demonstrate that the functional hClC-1 unit consists of two subunits.

Portable Magnetic Gradiometer for Real-Time Localization and Classification of Unexploded Ordnance

DTIC Science & Technology

2006-09-01

classification (DLC) of Unexploded Ordnance (UXO). The portable gradiometer processes data from triaxial fluxgate magnetometers to develop sets of...low-noise (ង pTrms/√Hz) fluxgate -type Triaxial Magnetometers (TM). Paired sets of TMs comprise magnetic gradient sensor “axes” of the array that...channels of analog B-field data. The digitizers can be locked to the Global Positioning System to provide; a) Precise sensor channel timing, and b

Wintertime sea surface temperature fronts in the Taiwan Strait

NASA Astrophysics Data System (ADS)

Chang, Yi; Shimada, Teruhisa; Lee, Ming-An; Lu, Hsueh-Jung; Sakaida, Futoki; Kawamura, Hiroshi

2006-12-01

We present wintertime variations and distributions of sea surface temperature (SST) fronts in the Taiwan Strait by applying an entropy-based edge detection method to 10-year (1996-2005) satellite SST images with grid size of 0.01°. From climatological monthly mean maps of SST gradient magnitude in winter, we identify four significant SST fronts in the Taiwan Strait. The Mainland China Coastal Front is a long frontal band along the 50-m isobath near the Chinese coast. The sharp Peng-Chang Front appears along the Peng-Hu Channel and extends northward around the Chang-Yuen Ridge. The Taiwan Bank Front evolves in early winter. As the winter progresses, the front becomes broad and moves toward the Chinese coast, connecting to the Mainland China Coastal Front. The Kuroshio Front extends northeastward from the northeastern tip of Taiwan with a semicircle-shape curving along the 100-m isobath.

Purification of the small mechanosensitive channel of Escherichia coli (MscS): the subunit structure, conduction, and gating characteristics in liposomes

NASA Technical Reports Server (NTRS)

Sukharev, Sergei

2002-01-01

The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic downshift. It has been identified in Escherichia coli as a product of the orphan yggB gene, now called mscS (Levina et al., 1999, EMBO J. 18:1730). Here I show that that the isolated 31-kDa MscS protein is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. MscS-6His complexes purified in the presence of octylglucoside and lipids migrate in a high-resolution gel-filtration column as particles of approximately 200 kDa. Consistent with that, the protein cross-linking patterns predict a hexamer. The channel reconstituted in soybean asolectin liposomes was activated by pressures of 20-60 mm Hg and displayed the same asymmetric I-V curve and slight anionic preference as in situ. At the same time, the single-channel conductance is proportional to the buffer conductivity in a wide range of salt concentrations. The rate of channel activation in response to increasing pressure gradient across the patch was slower than the rate of closure in response to decreasing steps of pressure gradient. Therefore, the open probability curves were recorded with descending series of pressures. Determination of the curvature of patches by video imaging permitted measurements of the channel activity as a function of membrane tension (gamma). Po(gamma) curves had the midpoint at 5.5 +/- 0.1 dyne/cm and gave estimates for the energy of opening DeltaG = 11.4 +/- 0.5 kT, and the transition-related area change DeltaA = 8.4 +/- 0.4 nm(2) when fitted with a two-state Boltzmann model. The correspondence between channel properties in the native and reconstituted systems is discussed.

Premature Mobility of Boulders in Constructed Step-pool River Structures in the Carmel River, CA: The Role of Fish-centric Design Constraints, and Flow on Structural Stability

NASA Astrophysics Data System (ADS)

Smith, D. P.; Chow, K.; Luna, L.

2017-12-01

The 32 m tall San Clemente Dam (Carmel River, CA) was removed in 2015 to eliminate seismic risk and to improve fish passage for all life stages of steelhead (O. mykiss). Reservoir sediment was sequestered in place, rather than released, and a new 1000 m long channel/floodplain system was constructed to circumvent the stored sediment. The channel comprised a 250 m long, meandering low-gradient reach and a 750 m reach with alternating step-pool sections, plane beds, and resting pools. The floodprone surfaces were compacted, wrapped in geotechnical fabric and vegetated. This study analyzes the geomorphic evolution of the new channel system during its first two years of service based upon detailed field inspection, SfM photogrammetry, orthophoto analysis, and 2d hydraulic modeling. A significant proportion of the step-pool structures experienced premature mobility and several reaches of engineered stream banks were eroded in the first year. Individual, six-tonne boulders were mobilized despite experiencing less than the 3 yr flow. The channel and floodplain were fully repaired following the first year. Strong flows (two 10-yr floods and a 30-yr flood) during the second year catastrophically altered the constructed channel and floodplain. While the low-gradient reach remained intact, each of the original step-pool structures was either completely mobilized and destroyed, buried by gravel, or bypassed by the subsequent channel. Despite the overall structural failure of the constructed channel, the new channel does not block steelhead migration, and can be serendipitously considered an ecological success. Step-pool design was constrained by a fish-centric requirement that steps be 1 ft tall or less. Some constructed "resting pools" filled rather than transport sediment. Using fish-centric constraints in the design, rather than strictly fluvial geomorphic principles may have contributed to early failure of the step-pool structures and other parts of the system.

User's Guide for Mixed-Size Sediment Transport Model for Networks of One-Dimensional Open Channels

USGS Publications Warehouse

Bennett, James P.

2001-01-01

This user's guide describes a mathematical model for predicting the transport of mixed sizes of sediment by flow in networks of one-dimensional open channels. The simulation package is useful for general sediment routing problems, prediction of erosion and deposition following dam removal, and scour in channels at road embankment crossings or other artificial structures. The model treats input hydrographs as stepwise steady-state, and the flow computation algorithm automatically switches between sub- and supercritical flow as dictated by channel geometry and discharge. A variety of boundary conditions including weirs and rating curves may be applied both external and internal to the flow network. The model may be used to compute flow around islands and through multiple openings in embankments, but the network must be 'simple' in the sense that the flow directions in all channels can be specified before simulation commences. The location and shape of channel banks are user specified, and all bedelevation changes take place between these banks and above a user-specified bedrock elevation. Computation of sediment-transport emphasizes the sand-size range (0.0625-2.0 millimeter) but the user may select any desired range of particle diameters including silt and finer (<0.0625 millimeter). As part of data input, the user may set the original bed-sediment composition of any number of layers of known thickness. The model computes the time evolution of total transport and the size composition of bed- and suspended-load sand through any cross section of interest. It also tracks bed -surface elevation and size composition. The model is written in the FORTRAN programming language for implementation on personal computers using the WINDOWS operating system and, along with certain graphical output display capability, is accessed from a graphical user interface (GUI). The GUI provides a framework for selecting input files and parameters of a number of components of the sediment-transport process. There are no restrictions in the use of the model as to numbers of channels, channel junctions, cross sections per channel, or points defining the cross sections. Following completion of the simulation computations, the GUI accommodates display of longitudinal plots of either bed elevation and size composition, or of transport rate and size composition of the various components, for individual channels and selected times during the simulation period. For individual cross sections, the GUI also allows display of time series of transport rate and size composition of the various components and of bed elevation and size composition.

A test of size-scaling and relative-size hypotheses for the moon illusion.

PubMed

Redding, Gordon M

2002-11-01

In two experiments participants reproduced the size of the moon in pictorial scenes under two conditions: when the scene element was normally oriented, producing a depth gradient like a floor, or when the scene element was inverted, producing a depth gradient like a ceiling. Target moons were located near to or far from the scene element. Consistent with size constancy scaling, the illusion reversed when the "floor" of a pictorial scene was inverted to represent a "ceiling." Relative size contrast predicted a reduction or increase in the illusion with no change in direction. The relation between pictorial and natural moon illusions is discussed.

Dual circuit embossed sheet heat transfer panel

DOEpatents

Morgan, G.D.

1984-02-21

A heat transfer panel provides redundant cooling for fusion reactors or the like environment requiring low-mass construction. Redundant cooling is provided by two independent cooling circuits, each circuit consisting of a series of channels joined to inlet and outlet headers. The panel comprises a welded joinder of two full-size and two much smaller partial-size sheets. The first full-size sheet is embossed to form first portions of channels for the first and second circuits, as well as a header for the first circuit. The second full-sized sheet is then laid over and welded to the first full-size sheet. The first and second partial-size sheets are then overlaid on separate portions of the second full-sized sheet, and are welded thereto. The first and second partial-sized sheets are embossed to form inlet and outlet headers, which communicate with channels of the second circuit through apertures formed in the second full-sized sheet. 6 figs.

Dual-circuit embossed-sheet heat-transfer panel

DOEpatents

Morgan, G.D.

1982-08-23

A heat transfer panel provides redundant cooling for fusion reactors or the like environment requiring low-mass construction. Redundant cooling is provided by two independent cooling circuits, each circuit consisting of a series of channels joined to inlet and outlet headers. The panel comprises a welded joinder of two full-size and two much smaller partial-size sheets. The first full-size sheet is embossed for form first portions of channels for the first and second circuits, as well as a header for the first circuit. The second full-sized sheet is then laid over and welded to the first full-size sheet. The first and second partial-size sheets are then overlaid on separate portions of the second full-sized sheet, and are welded thereto. The first and second partial-sized sheets are embossed to form inlet and outlet headers, which communicate with channels of the second circuit through apertures formed in the second full-sized sheet.

Dual circuit embossed sheet heat transfer panel

DOEpatents

Morgan, Grover D.

1984-01-01

A heat transfer panel provides redundant cooling for fusion reactors or the like environment requiring low-mass construction. Redundant cooling is provided by two independent cooling circuits, each circuit consisting of a series of channels joined to inlet and outlet headers. The panel comprises a welded joinder of two full-size and two much smaller partial-size sheets. The first full-size sheet is embossed to form first portions of channels for the first and second circuits, as well as a header for the first circuit. The second full-sized sheet is then laid over and welded to the first full-size sheet. The first and second partial-size sheets are then overlaid on separate portions of the second full-sized sheet, and are welded thereto. The first and second partial-sized sheets are embossed to form inlet and outlet headers, which communicate with channels of the second circuit through apertures formed in the second full-sized sheet.

Gradients in pore size enhance the osteogenic differentiation of human mesenchymal stromal cells in three-dimensional scaffolds

NASA Astrophysics Data System (ADS)

di Luca, Andrea; Ostrowska, Barbara; Lorenzo-Moldero, Ivan; Lepedda, Antonio; Swieszkowski, Wojcech; van Blitterswijk, Clemens; Moroni, Lorenzo

2016-03-01

Small fractures in bone tissue can heal by themselves, but in case of larger defects current therapies are not completely successful due to several drawbacks. A possible strategy relies on the combination of additive manufactured polymeric scaffolds and human mesenchymal stromal cells (hMSCs). The architecture of bone tissue is characterized by a structural gradient. Long bones display a structural gradient in the radial direction, while flat bones in the axial direction. Such gradient presents a variation in bone density from the cancellous bone to the cortical bone. Therefore, scaffolds presenting a gradient in porosity could be ideal candidates to improve bone tissue regeneration. In this study, we present a construct with a discrete gradient in pore size and characterize its ability to further support the osteogenic differentiation of hMSCs. Furthermore, we studied the behaviour of hMSCs within the different compartments of the gradient scaffolds, showing a correlation between osteogenic differentiation and ECM mineralization, and pore dimensions. Alkaline phosphatase activity and calcium content increased with increasing pore dimensions. Our results indicate that designing structural porosity gradients may be an appealing strategy to support gradual osteogenic differentiation of adult stem cells.

Simulation and analysis of the interactions between split gradient coils and a split magnet cryostat in an MRI-PET system.

PubMed

Liu, Limei; Sanchez-Lopez, Hector; Poole, Michael; Liu, Feng; Crozier, Stuart

2012-09-01

Splitting a magnetic resonance imaging (MRI) magnet into two halves can provide a central region to accommodate other modalities, such as positron emission tomography (PET). This approach, however, produces challenges in the design of the gradient coils in terms of gradient performance and fabrication. In this paper, the impact of a central gap in a split MRI system was theoretically studied by analysing the performance of split, actively-shielded transverse gradient coils. In addition, the effects of the eddy currents induced in the cryostat on power loss, mechanical vibration and magnetic field harmonics were also investigated. It was found, as expected, that the gradient performance tended to decrease as the central gap increased. Furthermore, the effects of the eddy currents were heightened as a consequence of splitting the gradient assembly into two halves. An optimal central gap size was found, such that the split gradient coils designed with this central gap size could produce an engineering solution with an acceptable trade-off between gradient performance and eddy current effects. These investigations provide useful information on the inherent trade-offs in hybrid MRI imaging systems. Copyright © 2012 Elsevier Inc. All rights reserved.

Sedimentation of a sphere in a fluid channel

NASA Astrophysics Data System (ADS)

Pitois, Olivier; Fritz, Christelle; Pasol, Laurentiu; Vignes-Adler, Michèle

2009-10-01

We studied both experimentally and numerically the sedimentation velocity of small solid particles through liquid channels merging at the intersection of three soap films. The wall mobility induces a nontrivial behavior for the particle drag coefficient, providing particular transport properties that are not observed for channels with rigid walls. It is shown that for sufficiently small particles, slow and fast motions are observed for the particle along the channel, depending on the particle position within the channel cross section and the sphere/channel size ratio. The velocity corresponding to fast motions can be as high as twice the Stokes velocity in an unbounded fluid. Moreover, the fast motions are not observed anymore when the size ratio exceeds a critical value, which has been found to be approximately equal to 0.5. As another major difference with the solid wall channel, the sphere velocity does not vanish when the size ratio reaches unity. Instead, the smallest value is found to be 1/4 of the Stokes velocity.

Channel Transmission Loss Studies During Ephemeral Flow Events: ER-5-3 Channel and Cambric Ditch, Nevada Test Site, Nye County, Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

J.J. Miller; S.A. Mizell; R.H. French

2005-10-01

Transmission losses along ephemeral channels are an important, yet poorly understood, aspect of rainfall-runoff prediction. Losses occur as flow infiltrates channel bed, banks, and floodplains. Estimating transmission losses in arid environments is difficult because of the variability of surficial geomorphic characteristics and infiltration capacities of soils and near-surface low-permeability geologic layers (e.g., calcrete). Transmission losses in ephemeral channels are nonlinear functions of discharge and time (Lane, 1972), and vary spatially along the channel reach and with soil antecedent moisture conditions (Sharma and Murthy, 1994). Rainfall-runoff models used to estimate peak discharge and runoff volume for flood hazard assessment are notmore » designed specifically for ephemeral channels, where transmission loss can be significant because of the available storage volume in channel soils. Accuracy of the flow routing and rainfall-runoff models is dependent on the transmission loss estimate. Transmission loss rate is the most uncertain parameter in flow routing through ephemeral channels. This research, sponsored by the U.S. Department of Energy, National Nuclear Security Administration (DOE/NNSA) and conducted at the Nevada Test Site (NTS), is designed to improve understanding of the impact of transmission loss on ephemeral flood modeling and compare various methodologies for predicting runoff from rainfall events. Various applications of this research to DOE projects include more site-specific accuracy in runoff prediction; possible reduction in size of flood mitigation structures at the NTS; and a better understanding of expected infiltration from runoff losses into landfill covers. Two channel transmission loss field experiments were performed on the NTS between 2001 and 2003: the first was conducted in the ER-5-3 channel (Miller et al., 2003), between March and June 2001, and the second was conducted in the Cambric Ditch (Mizell et al., 2005), between April and July 2003. Both studies used water discharged from unrelated drilling activities during well development and aquifer pump tests. Discharge measurements at several flumes located along the channels were used to directly measure transmission losses. Flume locations were chosen in relation to geomorphic surface types and ages, vegetative cover and types, subsurface indurated layers (calcrete), channel slopes, etc. Transmission losses were quantified using three different analysis methods. Method 1 uses Lane's Method (Lane, 1983) for estimating flood magnitude in ephemeral channels. Method 2 uses heat as a subsurface tracer for infiltration. Numerical modeling, using HYDRUS-2D (Simunek et al., 1999), a finite-element-based flow and transport code, was applied to estimate infiltration from soil temperature data. Method 3 uses hydraulic gradient and water content in a Darcy's Law approach (Freeze and Cherry, 1979) to calculate one-dimensional flow rates. Heat dissipation and water content data were collected for this analysis.« less

Sediment sorting at a side channel bifurcation

NASA Astrophysics Data System (ADS)

van Denderen, Pepijn; Schielen, Ralph; Hulscher, Suzanne

2017-04-01

Side channels have been constructed to reduce the flood risk and to increase the ecological value of the river. In various Dutch side channels large aggradation in these channels occurred after construction. Measurements show that the grain size of the deposited sediment in the side channel is smaller than the grain size found on the bed of the main channel. This suggest that sorting occurs at the bifurcation of the side channel. The objective is to reproduce with a 2D morphological model the fining of the bed in the side channel and to study the effect of the sediment sorting on morphodynamic development of the side channel. We use a 2D Delft3D model with two sediment fractions. The first fraction corresponds with the grain size that can be found on the bed of the main channel and the second fraction corresponds with the grain size found in the side channel. With the numerical model we compute several side channel configurations in which we vary the length and the width of the side channel, and the curvature of the upstream channel. From these computations we can derive the equilibrium state and the time scale of the morphodynamic development of the side channel. Preliminary results show that even when a simple sediment transport relation is used, like Engelund & Hansen, more fine sediment enters the side channel than coarse sediment. This is as expected, and is probably related to the bed slope effects which are a function of the Shields parameter. It is expected that by adding a sill at the entrance of the side channel the slope effect increases. This might reduce the amount of coarse sediment which enters the side channel even more. It is unclear whether the model used is able to reproduce the effect of such a sill correctly as modelling a sill and reproducing the correct hydrodynamic and morphodynamic behaviour is not straightforward in a 2D model. Acknowledgements: This research is funded by STW, part of the Dutch Organization for Scientific Research under grant number P12-P14 (RiverCare Perspective Programme) project number 13516.

Effect of excess pore pressure on the long runout of debris flows over low gradient channels: A case study of the Dongyuege debris flow in Nu River, China

NASA Astrophysics Data System (ADS)

Zhou, Zhen-Hua; Ren, Zhe; Wang, Kun; Yang, Kui; Tang, Yong-Jun; Tian, Lin; Xu, Ze-Min

2018-05-01

Debris flows with long reaches are one of the major natural hazards to human life and property on alluvial fans, as shown by the debris flow that occurred in the Dongyuege (DYG) Gully in August 18, 2010, and caused 96 deaths. The travel distance and the runout distance of the DYG large-scale tragic debris flow were 11 km and 9 km, respectively. In particular, the runout distance over the low gradient channel (channel slope < 5°) upstream of the depositional fan apex reached up to 3.3 km. The build-up and maintenance of excess pore pressure in the debris-flow mass might have played a crucial role in the persistence and long runout of the bouldery viscous debris flow. Experiments to measure pore pressure and pore water escape have been carried out by reconstituting the debris flow bodies with the DYG debris flow deposit. The slurrying of the debris is governed by solid volumetric concentration (SVC), and the difference between the lower SVC limit and the upper SVC limit can be defined as debris flow index (Id). Peak value (Kp) and rate of dissipation (R) of relative excess pore pressure are dependent on SVC. Further, the SVC that gives the lowest rate of dissipation is regarded as the optimum SVC (Cvo). The dissipation response of excess pore pressure can be characterized by the R value under Cvo at a given moment (i.e., 0.5 h, 1 h or 2 h later after peak time). The results reveal that a relatively high level of excess pore pressure developed within the DYG debris-flow mass and had a strong persistence capability. Further research shows that the development, peak value and dissipation of excess pore pressure in a mixture of sediment and water are related to the maximum grain size (MGS), gradation and mineralogy of clay-size particles of the sediment. The layer-lattice silicates in clay particles can be the typical clay minerals, including kaolinite, montmorillonite and illite, and also the unrepresentative clay minerals such as muscovite and chlorite. Moreover, small woody debris can also contribute to the slurrying of sediments and maintenance of debris flows in well vegetated mountainous areas and the boulders suspended in debris flows can elevate excess pore pressure and extend debris-flow mobility. The parameters, including Id, Kp, R and etc., are affected by the intrinsic properties of debris. They, therefore, can reflect the slurrying susceptibility of sediments, and can also be applied to the research on the occurrence mechanisms and risk assessment of other debris flows.

Secondary currents in a curved, stratified, estuarine channel

USGS Publications Warehouse

Lacy, J.R.; Monismith, Stephen G.

2001-01-01

This paper presents a study of secondary circulation in a curved stratified channel in northern San Francisco Bay over a 12.5-hour tidal cycle. Secondary currents were strong at times (varying by up to 35 cm/s from top to bottom) but relatively transient, as the balance between centrifugal and lateral baroclinic forcing changed over time. The short travel time around the bend did not allow a steady state balance to develop between centrifugal and lateral baroclinic forcing. During the flood tide the confluence of two streams with different velocities produced a strong lateral gradient in streamwise velocity. As a result, lateral advection was a significant term in the streamwise momentum balance, having the same order of magnitude as the barotropic and baroclinic pressure gradients, and the frictional terms. During the first part of the ebb, secondary currents were induced by lateral baroclinic forcing. The direction of the secondary circulation reversed later in the ebb, as the baroclinic forcing became weaker than the centrifugal acceleration. The gradient Richardson number showed that stratification was stable over most of the tidal cycle, decreasing the importance of friction and allowing secondary currents to persist. Copyright 2001 by the American Geophysical Union.

Vorticity, backscatter and counter-gradient transport predictions using two-level simulation of turbulent flows

NASA Astrophysics Data System (ADS)

Ranjan, R.; Menon, S.

2018-04-01

The two-level simulation (TLS) method evolves both the large-and the small-scale fields in a two-scale approach and has shown good predictive capabilities in both isotropic and wall-bounded high Reynolds number (Re) turbulent flows in the past. Sensitivity and ability of this modelling approach to predict fundamental features (such as backscatter, counter-gradient turbulent transport, small-scale vorticity, etc.) seen in high Re turbulent flows is assessed here by using two direct numerical simulation (DNS) datasets corresponding to a forced isotropic turbulence at Taylor's microscale-based Reynolds number Reλ ≈ 433 and a fully developed turbulent flow in a periodic channel at friction Reynolds number Reτ ≈ 1000. It is shown that TLS captures the dynamics of local co-/counter-gradient transport and backscatter at the requisite scales of interest. These observations are further confirmed through a posteriori investigation of the flow in a periodic channel at Reτ = 2000. The results reveal that the TLS method can capture both the large- and the small-scale flow physics in a consistent manner, and at a reduced overall cost when compared to the estimated DNS or wall-resolved LES cost.

Measuring restriction sizes using diffusion weighted magnetic resonance imaging: a review.

PubMed

Martin, Melanie

2013-01-01

This article reviews a new concept in magnetic resonance as applied to cellular and biological systems. Diffusion weighted magnetic resonance imaging can be used to infer information about restriction sizes of samples being measured. The measurements rely on the apparent diffusion coefficient changing with diffusion times as measurements move from restricted to free diffusion regimes. Pulsed gradient spin echo (PGSE) measurements are limited in the ability to shorten diffusion times and thus are limited in restriction sizes which can be probed. Oscillating gradient spin echo (OGSE) measurements could provide shorter diffusion times so smaller restriction sizes could be probed.

The Influence of Lithology on the Formation of Reaction Infiltration Instabilities in Mantle Rocks

NASA Astrophysics Data System (ADS)

Pec, M.; Holtzman, B. K.; Zimmerman, M. E.; Kohlstedt, D. L.

2017-12-01

The formation of oceanic plates requires extraction of large volumes of melt from the mantle. Several lines of evidence suggest that melt extraction is rapid and, therefore, necessitates high-permeability pathways. Such pathways may form as a result of melt-rock reactions. We report the results of a series of Darcy-type experiments designed to study the development of channels due to melt-solid reactions in mantle lithologies. We sandwiched a partially molten rock between a melt source and a porous sink and annealed it at high pressure (P = 300 MPa) and high temperatures (T = 1200° or 1250°C) with a controlled pressure gradient (∂P/∂z = 0-100 MPa/mm). To study the influence of lithology on the channel formation, we synthesized partially molten rocks of harzburgitic (40:40:20 Ol - Opx - basalt), wehrlitic (40:40:20 Ol - Cpx - basalt) and lherzolitic (65:25:10 Ol - Opx - Cpx) composition. The melt source was a disk of alkali basalt. In all experiments, irrespective of the exact mineralogy, melt - undersaturated in silica - from the source dissolved pyroxene in the partially molten rock and precipitated olivine ( Fo82), thereby forming a dunite reaction layer at the interface between the source and the partially molten rock. In samples annealed under a small pressure gradient, the reaction layer was roughly planar. However, if the velocity of melt due to porous flow exceeded 0.1 µm/s, the reaction layer locally protruded into the partially molten rock forming finger-like, melt-rich channels in rocks of wehrlitic and harzburgitic composition. The lherzolitic rocks were generally impermeable to the melt except at highest-pressure gradients where a narrow fracture developed, forming a dyke which drained the melt reservoir. Three-dimensional reconstructions using micro-CT images revealed clear differences between the dyke (a narrow, through-going planar feature) and the channels formed by reactive infiltration (multiple sinuous finger-like features). Apparently, the fraction of soluble minerals together with the melt fraction in the partially molten rock control whether dykes or reactive channels develop. Our experiments demonstrate that melt-rock reactions can lead to channelization in mantle lithologies, and the observed lithological transformations broadly agree with those observed in nature

Autogenic dynamics of debris-flow fans

NASA Astrophysics Data System (ADS)

van den Berg, Wilco; de Haas, Tjalling; Braat, Lisanne; Kleinhans, Maarten

2015-04-01

Alluvial fans develop their semi-conical shape by cyclic avulsion of their geomorphologically active sector from a fixed fan apex. These cyclic avulsions have been attributed to both allogenic and autogenic forcings and processes. Autogenic dynamics have been extensively studied on fluvial fans through physical scale experiments, and are governed by cyclic alternations of aggradation by unconfined sheet flow, fanhead incision leading to channelized flow, channel backfilling and avulsion. On debris-flow fans, however, autogenic dynamics have not yet been directly observed. We experimentally created debris-flow fans under constant extrinsic forcings, and show that autogenic dynamics are a fundamental intrinsic process on debris-flow fans. We found that autogenic cycles on debris-flow fans are driven by sequences of backfilling, avulsion and channelization, similar to the cycles on fluvial fans. However, the processes that govern these sequences are unique for debris-flow fans, and differ fundamentally from the processes that govern autogenic dynamics on fluvial fans. We experimentally observed that backfilling commenced after the debris flows reached their maximum possible extent. The next debris flows then progressively became shorter, driven by feedbacks on fan morphology and flow-dynamics. The progressively decreasing debris-flow length caused in-channel sedimentation, which led to increasing channel overflow and wider debris flows. This reduced the impulse of the liquefied flow body to the flow front, which then further reduced flow velocity and runout length, and induced further in-channel sedimentation. This commenced a positive feedback wherein debris flows became increasingly short and wide, until the channel was completely filled and the apex cross-profile was plano-convex. At this point, there was no preferential transport direction by channelization, and the debris flows progressively avulsed towards the steepest, preferential, flow path. Simultaneously, the debris flows started to channelize, forced by increasingly effective concentration of the flow impulse to the flow front, which caused more effective lateral levee formation and an increasingly well-defined channel. This process continued until the debris flows reached their maximum possible extent and the cycle was reverted. Channelization occurred in the absence of erosion, in contrast with fluvial fans. Backfilling and channelization cycles were gradual and symmetric, requiring multiple debris flows to be completed. These results add debris-flow fans to the spectrum of fan-shaped aqueous systems that are affected by autogenic dynamics, now ranging from low-gradient rivers systems to steep-gradient mass-flow fans.

Topography Battles Surface Texture: An Experimental Study of Pool-riffle Formation

NASA Astrophysics Data System (ADS)

Chartrand, S. M.; Hassan, M. A.; Jellinek, M.

2016-12-01

Pool-riffles are perhaps the most common streambed shape found in streams and rivers, and not surprisingly, they are essential to salmon ecology, and are a central focus of many restoration actions. Yet, when an applied earth scientist or engineer is faced with developing a pool-riffle design, there is a lack of clear and rigorously developed design guidelines. Given the volumes of money spent annually within the restoration industry, this is a real problem. Recognition of this problem is growing, however, and an increasing level of attention has been directed to questions of pool-riffle formation in the past decade. At this point and given certain landscape characteristics, it is well established that streamwise gradients in channel width are associated with pool-riffles. Specifically, pools are associated with negative gradients in width, and riffles with positive gradients. Importantly, these associations have now been documented from field-derived data, as well as via experimental and numerical investigations. There is much to build from the present knowledge base, and central to this are questions related to (a) how pool-riffles evolve during the formative process, (b) what are the basic set of ingredients necessary for pool-riffle formation within systems characterized by relatively non-erodible channel margins, and (c) do pool-riffles persist, once formed, under a broad range of forcing conditions? We have completed four physical experiments examining the process and evolution of pool-riffle formation under a large range of upstream boundary, as well as physical channel conditions. We will report on two of the completed experiments. Our work will highlight two new non-dimensional channel evolution numbers, derived to help describe and characterize bedform development, as well as response to perturbations from near-equilibrium conditions. The channel evolution numbers lay the foundation for development of a new regime diagram, which quantifies the basic ingredients needed to drive pool-riffle formation, as well as formation of other types of gravel bedforms. We believe our work holds promise for application in identifying suitable conditions for pool-riffle construction, and natural maintenance over typical restoration project time frames.

Sea surface temperature of the coastal zones of France

NASA Technical Reports Server (NTRS)

Deschamps, P. Y.; Crepon, M.; Monget, J. M.; Verger, F. (Principal Investigator); Frouin, R.; Cassanet, J.; Wald, L.

1980-01-01

The various thermal gradients in the coastal zones of France were mapped with regard to natural phenomena and man made thermal effluents. The mesoscale thermal features of the English Channel, the Bay of Biscay, and the northwestern Mediterranean Sea were also studied. The evolution of the thermal gradients generated by the main estuaries of the French coastal zones was investigated along with the modeling of diurnal heating of the sea surface and its influence on the oceanic surface layers.

Sea surface temperature of the coastal zones of France

NASA Technical Reports Server (NTRS)

Deschamps, P. Y.; Crepon, M.; Monget, J. M.; Verger, F. (Principal Investigator); Frouin, R.; Cassanet, J.; Wald, L.

1982-01-01

Thermal gradients in French coastal zones for the period of one year were mapped in order to enable a coherent study of certain oceanic features detectable by the variations in the sea surface temperature field and their evolution in time. The phenomena examined were mesoscale thermal features in the English Channel, the Bay of Biscay, and the northwestern Mediterranean; thermal gradients generated by French estuary systems; and diurnal heating in the sea surface layer. The investigation was based on Heat Capacity Mapping Mission imagery.

TMC1 and TMC2 are components of the mechanotransduction channel in hair cells of the mammalian inner ear.

PubMed

Pan, Bifeng; Géléoc, Gwenaelle S; Asai, Yukako; Horwitz, Geoffrey C; Kurima, Kiyoto; Ishikawa, Kotaro; Kawashima, Yoshiyuki; Griffith, Andrew J; Holt, Jeffrey R

2013-08-07

Sensory transduction in auditory and vestibular hair cells requires expression of transmembrane channel-like (Tmc) 1 and 2 genes, but the function of these genes is unknown. To investigate the hypothesis that TMC1 and TMC2 proteins are components of the mechanosensitive ion channels that convert mechanical information into electrical signals, we recorded whole-cell and single-channel currents from mouse hair cells that expressed Tmc1, Tmc2, or mutant Tmc1. Cells that expressed Tmc2 had high calcium permeability and large single-channel currents, while cells with mutant Tmc1 had reduced calcium permeability and reduced single-channel currents. Cells that expressed Tmc1 and Tmc2 had a broad range of single-channel currents, suggesting multiple heteromeric assemblies of TMC subunits. The data demonstrate TMC1 and TMC2 are components of hair cell transduction channels and contribute to permeation properties. Gradients in TMC channel composition may also contribute to variation in sensory transduction along the tonotopic axis of the mammalian cochlea. Copyright © 2013 Elsevier Inc. All rights reserved.

Microfludic Device for Creating Ionic Strength Gradients over DNA Microarrays for Efficient DNA Melting Studies and Assay Development

PubMed Central

Petersen, Jesper; Poulsen, Lena; Birgens, Henrik; Dufva, Martin

2009-01-01

The development of DNA microarray assays is hampered by two important aspects: processing of the microarrays is done under a single stringency condition, and characteristics such as melting temperature are difficult to predict for immobilized probes. A technical solution to these limitations is to use a thermal gradient and information from melting curves, for instance to score genotypes. However, application of temperature gradients normally requires complicated equipment, and the size of the arrays that can be investigated is restricted due to heat dissipation. Here we present a simple microfluidic device that creates a gradient comprising zones of defined ionic strength over a glass slide, in which each zone corresponds to a subarray. Using this device, we demonstrated that ionic strength gradients function in a similar fashion as corresponding thermal gradients in assay development. More specifically, we noted that (i) the two stringency modulators generated melting curves that could be compared, (ii) both led to increased assay robustness, and (iii) both were associated with difficulties in genotyping the same mutation. These findings demonstrate that ionic strength stringency buffers can be used instead of thermal gradients. Given the flexibility of design of ionic gradients, these can be created over all types of arrays, and encompass an attractive alternative to temperature gradients, avoiding curtailment of the size or spacing of subarrays on slides associated with temperature gradients. PMID:19277213

Microfludic device for creating ionic strength gradients over DNA microarrays for efficient DNA melting studies and assay development.

PubMed

Petersen, Jesper; Poulsen, Lena; Birgens, Henrik; Dufva, Martin

2009-01-01

The development of DNA microarray assays is hampered by two important aspects: processing of the microarrays is done under a single stringency condition, and characteristics such as melting temperature are difficult to predict for immobilized probes. A technical solution to these limitations is to use a thermal gradient and information from melting curves, for instance to score genotypes. However, application of temperature gradients normally requires complicated equipment, and the size of the arrays that can be investigated is restricted due to heat dissipation. Here we present a simple microfluidic device that creates a gradient comprising zones of defined ionic strength over a glass slide, in which each zone corresponds to a subarray. Using this device, we demonstrated that ionic strength gradients function in a similar fashion as corresponding thermal gradients in assay development. More specifically, we noted that (i) the two stringency modulators generated melting curves that could be compared, (ii) both led to increased assay robustness, and (iii) both were associated with difficulties in genotyping the same mutation. These findings demonstrate that ionic strength stringency buffers can be used instead of thermal gradients. Given the flexibility of design of ionic gradients, these can be created over all types of arrays, and encompass an attractive alternative to temperature gradients, avoiding curtailment of the size or spacing of subarrays on slides associated with temperature gradients.

Measurement of Transverse Wakefields Induced by a Misaligned Positron Bunch in a Hollow Channel Plasma Accelerator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lindstrom, C. A.; Adli, E.; Allen, J. M.

Hollow channel plasma wakefield acceleration is a proposed method to provide high acceleration gradients for electrons and positrons alike: a key to future lepton colliders. However, beams which are misaligned from the channel axis induce strong transverse wakefields, deflecting beams and reducing the collider luminosity. This undesirable consequence sets a tight constraint on the alignment accuracy of the beam propagating through the channel. Direct measurements of beam misalignment-induced transverse wakefields are therefore essential for designing mitigation strategies. We present the first quantitative measurements of transverse wakefields in a hollow plasma channel, induced by an off-axis 20 GeV positron bunch, andmore » measured with another 20 GeV lower charge trailing positron probe bunch. Furthermore, the measurements are largely consistent with theory.« less

Measurement of Transverse Wakefields Induced by a Misaligned Positron Bunch in a Hollow Channel Plasma Accelerator

DOE PAGES

Lindstrom, C. A.; Adli, E.; Allen, J. M.; ...

2018-03-23

Hollow channel plasma wakefield acceleration is a proposed method to provide high acceleration gradients for electrons and positrons alike: a key to future lepton colliders. However, beams which are misaligned from the channel axis induce strong transverse wakefields, deflecting beams and reducing the collider luminosity. This undesirable consequence sets a tight constraint on the alignment accuracy of the beam propagating through the channel. Direct measurements of beam misalignment-induced transverse wakefields are therefore essential for designing mitigation strategies. We present the first quantitative measurements of transverse wakefields in a hollow plasma channel, induced by an off-axis 20 GeV positron bunch, andmore » measured with another 20 GeV lower charge trailing positron probe bunch. Furthermore, the measurements are largely consistent with theory.« less

Spearhead Nanometric Field-Effect Transistor Sensors for Single-Cell Analysis.

PubMed

Zhang, Yanjun; Clausmeyer, Jan; Babakinejad, Babak; Córdoba, Ainara López; Ali, Tayyibah; Shevchuk, Andrew; Takahashi, Yasufumi; Novak, Pavel; Edwards, Christopher; Lab, Max; Gopal, Sahana; Chiappini, Ciro; Anand, Uma; Magnani, Luca; Coombes, R Charles; Gorelik, Julia; Matsue, Tomokazu; Schuhmann, Wolfgang; Klenerman, David; Sviderskaya, Elena V; Korchev, Yuri

2016-03-22

Nanometric field-effect-transistor (FET) sensors are made on the tip of spear-shaped dual carbon nanoelectrodes derived from carbon deposition inside double-barrel nanopipettes. The easy fabrication route allows deposition of semiconductors or conducting polymers to comprise the transistor channel. A channel from electrodeposited poly pyrrole (PPy) exhibits high sensitivity toward pH changes. This property is exploited by immobilizing hexokinase on PPy nano-FETs to give rise to a selective ATP biosensor. Extracellular pH and ATP gradients are key biochemical constituents in the microenvironment of living cells; we monitor their real-time changes in relation to cancer cells and cardiomyocytes. The highly localized detection is possible because of the high aspect ratio and the spear-like design of the nano-FET probes. The accurately positioned nano-FET sensors can detect concentration gradients in three-dimensional space, identify biochemical properties of a single living cell, and after cell membrane penetration perform intracellular measurements.

Spearhead Nanometric Field-Effect Transistor Sensors for Single-Cell Analysis

PubMed Central

Córdoba, Ainara López; Ali, Tayyibah; Shevchuk, Andrew; Takahashi, Yasufumi; Novak, Pavel; Edwards, Christopher; Lab, Max; Gopal, Sahana; Chiappini, Ciro; Anand, Uma; Magnani, Luca; Coombes, R. Charles; Gorelik, Julia; Matsue, Tomokazu; Schuhmann, Wolfgang; Klenerman, David; Sviderskaya, Elena V.; Korchev, Yuri

2016-01-01

Nanometric field-effect-transistor (FET) sensors are made on the tip of spear-shaped dual carbon nanoelectrodes derived from carbon deposition inside double-barrel nanopipettes. The easy fabrication route allows deposition of semiconductors or conducting polymers to comprise the transistor channel. A channel from electrodeposited poly pyrrole (PPy) exhibits high sensitivity toward pH changes. This property is exploited by immobilizing hexokinase on PPy nano-FETs to give rise to a selective ATP biosensor. Extracellular pH and ATP gradients are key biochemical constituents in the microenvironment of living cells; we monitor their real-time changes in relation to cancer cells and cardiomyocytes. The highly localized detection is possible because of the high aspect ratio and the spear-like design of the nano-FET probes. The accurately positioned nano-FET sensors can detect concentration gradients in three-dimensional space, identify biochemical properties of a single living cell, and after cell membrane penetration perform intracellular measurements. PMID:26816294

Microfluidic droplet trapping array as nanoliter reactors for gas-liquid chemical reaction.

PubMed

Zhang, Qingquan; Zeng, Shaojiang; Qin, Jianhua; Lin, Bingcheng

2009-09-01

This article presents a simple method for trapping arrays of droplets relying on the designed microstructures of the microfluidic device, and this has been successfully used for parallel gas-liquid chemical reaction. In this approach, the trapping structure is composed of main channel, lateral channel and trapping region. Under a negative pressure, array droplets can be generated and trapped in the microstructure simultaneously, without the use of surfactant and the precise control of the flow velocity. By using a multi-layer microdevice containing the microstructures, single (pH gradient) and multiple gas-liquid reactions (metal ion-NH3 complex reaction) can be performed in array droplets through the transmembrane diffusion of the gas. The droplets with quantitative concentration gradient can be formed by only replacing the specific membrane. The established method is simple, robust and easy to operate, demonstrating the potential of this device for droplet-based high-throughput screening.

Large eddy simulation of incompressible turbulent channel flow

NASA Technical Reports Server (NTRS)

Moin, P.; Reynolds, W. C.; Ferziger, J. H.

1978-01-01

The three-dimensional, time-dependent primitive equations of motion were numerically integrated for the case of turbulent channel flow. A partially implicit numerical method was developed. An important feature of this scheme is that the equation of continuity is solved directly. The residual field motions were simulated through an eddy viscosity model, while the large-scale field was obtained directly from the solution of the governing equations. An important portion of the initial velocity field was obtained from the solution of the linearized Navier-Stokes equations. The pseudospectral method was used for numerical differentiation in the horizontal directions, and second-order finite-difference schemes were used in the direction normal to the walls. The large eddy simulation technique is capable of reproducing some of the important features of wall-bounded turbulent flows. The resolvable portions of the root-mean square wall pressure fluctuations, pressure velocity-gradient correlations, and velocity pressure-gradient correlations are documented.

Extraction channel design based on an equivalent lumped parameter method for a SCC-250 MeV superconducting cyclotron

NASA Astrophysics Data System (ADS)

Zhang, Lige; Fan, Kuanjun; Hu, Shengwei; Li, Xiaofei; Mei, Zhiyuan; Zeng, Zhijie; Chen, Wei; Qin, Bin; Rao, Yinong

2018-07-01

A SCC-250 MeV cyclotron, producing a 250 MeV proton beam, is under development in Huazhong University of Science and Technology (HUST) for proton therapy. The magnetic flux density, as a function of radius, decreases rapidly in the beam extraction region, which increases the radial beam size continuously along the extraction orbit. In this paper, an extraction channel inside the SCC-250 MeV is designed to control the beam size using passive magnetic channels. An equivalent lumped parameter method is used to establish the model of the extraction channel in the complex fringe magnetic field of the main magnet. Then, the extraction channel is designed using the lattice design software MADX. The beam envelopes are verified using particle tracing method. The maximum radial size of 6.8 mm and axial size of 4.3 mm meet the requirements of the extraction from the SCC-250 MeV.

Mapping spatial patterns of stream power and channel change along a gravel-bed river in northern Yellowstone

NASA Astrophysics Data System (ADS)

Lea, Devin M.

Stream power represents the rate of energy expenditure along a river and can be calculated using topographic data acquired via remote sensing or field surveys. This study used remote sensing and GIS tools along with field data to quantitatively relate temporal changes in the form of Soda Butte Creek, a gravel-bed river in northeastern Yellowstone National Park, to stream power gradients along an 8 km reach. Aerial photographs from 1994-2012 and cross-section surveys were used to develop a locational probability map and morphologic sediment budget to assess lateral channel mobility and changes in net sediment flux. A drainage area-to-discharge relationship and digital elevation model (DEM) developed from light detection and ranging (LiDAR) data were used to obtain the discharge and slope values needed to calculate stream power. Local and lagged relationships between mean stream power gradient at median peak discharge and volumes of erosion, deposition, and net sediment flux were quantified via spatial cross-correlation analyses. Similarly, autocorrelations of locational probabilities and sediment fluxes were used to examine spatial patterns of sediment sources and sinks. Energy expended above critical stream power was calculated for each time period to relate the magnitude and duration of peak flows to the total volumetric change in each time increment. Results indicated a lack of strong correlation between stream power gradients and sediment response, highlighting the geomorphic complexity of Soda Butte Creek and the inability of relatively simple statistical approaches to link sub-budget cell-scale sediment dynamics to larger-scale driving forces such as stream power gradients. Improving the moderate spatial resolution techniques used in this study and acquiring very-high resolution data from recently developed methods in fluvial remote sensing could help improve understanding of the spatial organization of stream power, sediment transport, and channel change in dynamic natural rivers.

Particle size distribution of main-channel-bed sediments along the upper Mississippi River, USA

USGS Publications Warehouse

Remo, Jonathan; Heine, Ruben A.; Ickes, Brian

2016-01-01

In this study, we compared pre-lock-and-dam (ca. 1925) with a modern longitudinal survey of main-channel-bed sediments along a 740-km segment of the upper Mississippi River (UMR) between Davenport, IA, and Cairo, IL. This comparison was undertaken to gain a better understanding of how bed sediments are distributed longitudinally and to assess change since the completion of the UMR lock and dam navigation system and Missouri River dams (i.e., mid-twentieth century). The comparison of the historic and modern longitudinal bed sediment surveys showed similar bed sediment sizes and distributions along the study segment with the majority (> 90%) of bed sediment samples having a median diameter (D50) of fine to coarse sand. The fine tail (≤ D10) of the sediment size distributions was very fine to medium sand, and the coarse tail (≥ D90) of sediment-size distribution was coarse sand to gravel. Coarsest sediments in both surveys were found within or immediately downstream of bedrock-floored reaches. Statistical analysis revealed that the particle-size distributions between the survey samples were statistically identical, suggesting no overall difference in main-channel-bed sediment-size distribution between 1925 and present. This was a surprising result given the magnitude of river engineering undertaken along the study segment over the past ~ 90 years. The absence of substantial differences in main-channel-bed-sediment size suggests that flow competencies within the highly engineered navigation channel today are similar to conditions within the less-engineered historic channel.

Gap Winds in a Fjord: Howe Sound, British Columbia.

NASA Astrophysics Data System (ADS)

Jackson, Peter L.

1993-01-01

Gap, outflow, or Squamish wind, is the cold low level seaward flow of air through fjords which dissect the coastal mountain barrier of northwestern North America. These flows, occurring mainly during winter, can be strong, threatening safety, economic activity and comfort. Howe Sound gap winds were studied using a combination of observations and several types of models. Observations of winds in Howe Sound showed that gap wind strength varied considerably along the channel, across the channel and vertically. Generally, winds increase down the channel, are strongest along the eastern side, and are below 1000 m depth. Observations were unable to answer all questions about gap winds due to data sparseness, particularly in the vertical direction. Therefore, several modelling approaches were used. The modelling began with a complete 3-dimensional quasi-Boussinesq model (CSU RAMS) and ended with the creation and testing of models which are conceptually simpler, and more easily interpreted and manipulated. A gap wind simulation made using RAMS was shown to be mostly successful by statistical evaluation compared to other mesoscale simulations, and by visual inspection of the fields. The RAMS output, which has very high temporal and spatial resolution, provided much additional information about the details of gap flow. In particular, RAMS results suggested a close analogy between gap wind and hydraulic channel flow, with hydraulic features such as supercritical flow and hydraulic jumps apparent. These findings imply gap wind flow could potentially be represented by much simpler models. The simplest possible models containing pressure gradient, advection and friction but not incorporating hydraulic effects, were created, tested, and found lacking. A hydraulic model, which in addition incorporates varying gap wind height and channel geometry, was created and shown to successfully simulate gap winds. Force balance analysis from RAMS and the hydraulic model showed that pressure gradient and advection are the most important forces, followed by friction which becomes an important force in fast supercritical flow. The sensitivity of gap wind speed to various parameters was found from sensitivity tests using the hydraulic model. Results indicated that gap wind speed increases with increasing boundary layer height and speed at the head of channel, and increasing synoptic pressure gradient. Gap wind speed decreases with increasing friction, and increasing boundary layer height at the seaward channel end. Increasing temperature differences between the cold gap wind air and the warmer air aloft was found to increase the variability of the flow--higher maximum but lower mean wind speeds.

Molecular dynamics study of ion transport through an open model of voltage-gated sodium channel.

PubMed

Li, Yang; Sun, Ruining; Liu, Huihui; Gong, Haipeng

2017-05-01

Voltage-gated sodium (Na V ) channels are critical in the signal transduction of excitable cells. In this work, we modeled the open conformation for the pore domain of a prokaryotic Na V channel (Na V Rh), and used molecular dynamics simulations to track the translocation of dozens of Na + ions through the channel in the presence of a physiological transmembrane ion concentration gradient and a transmembrane electrical field that was closer to the physiological one than previous studies. Channel conductance was then estimated from simulations on the wide-type and DEKA mutant of Na V Rh. Interestingly, the conductivity predicted from the DEKA mutant agrees well with experimental measurement on eukaryotic Na V 1.4 channel. Moreover, the wide-type and DEKA mutant of Na V Rh exhibited markedly distinct ion permeation patterns, which thus implies the mechanistic difference between prokaryotic and eukaryotic Na V channels. Copyright © 2017 Elsevier B.V. All rights reserved.

Coordinated Beamforming for MISO Interference Channel: Complexity Analysis and Efficient Algorithms

DTIC Science & Technology

2010-01-01

Algorithm The cyclic coordinate descent algorithm is also known as the nonlinear Gauss - Seidel iteration [32]. There are several studies of this type of...vkρ(vi−1). It can be shown that the above BB gradient projection direction is always a descent direction. The R-linear convergence of the BB method has...KKT solution ) of the inexact pricing algorithm for MISO interference channel. The latter is interesting since the convergence of the original pricing

Ion channel-transporter interactions

PubMed Central

Neverisky, Daniel L.; Abbott, Geoffrey W.

2016-01-01

All living cells require membrane proteins that act as conduits for the regulated transport of ions, solutes and other small molecules across the cell membrane. Ion channels provide a pore that permits often rapid, highly selective, and tightly regulated movement of ions down their electrochemical gradient. In contrast, active transporters can move moieties up their electrochemical gradient. The secondary active transporters (such as SLC superfamily solute transporters) achieve this by coupling uphill movement of the substrate to downhill movement of another ion, such as sodium. The primary active transporters (including H+/K+-ATPases and Na+/K+-ATPases) utilize ATP hydrolysis as an energy source to power uphill transport. It is well known that proteins in each of these classes work in concert with members of the other classes to ensure, for example, ion homeostasis, ion secretion, and restoration of ion balance following action potentials. More recently, evidence is emerging of direct physical interaction between true ion channels, and some primary or secondary active transporters. Here, we review the first known members of this new class of macromolecular complexes that we term “chansporters”, explore their biological roles, and discuss the pathophysiological consequences of their disruption. We compare functional and/or physical interactions between the ubiquitous KCNQ1 potassium channel and various active transporters, and examine other newly discovered chansporter complexes that suggest we may be seeing the tip of the iceberg in a newly emerging signaling modality. PMID:27098917

Wood and Sediment Dynamics in River Corridors

NASA Astrophysics Data System (ADS)

Wohl, E.; Scott, D.

2015-12-01

Large wood along rivers influences entrainment, transport, and storage of mineral sediment and particulate organic matter. We review how wood alters sediment dynamics and explore patterns among volumes of instream wood, sediment storage, and residual pools for dispersed pieces of wood, logjams, and beaver dams. We hypothesized that: volume of sediment per unit area of channel stored in association with wood is inversely proportional to drainage area; the form of sediment storage changes downstream; sediment storage correlates most strongly with wood load; and volume of sediment stored behind beaver dams correlates with pond area. Lack of data from larger drainage areas limits tests of these hypotheses, but analyses suggest a negative correlation between sediment volume and drainage area and a positive correlation between wood and sediment volume. The form of sediment storage in relation to wood changes downstream, with wedges of sediment upstream from jammed steps most prevalent in small, steep channels and more dispersed sediment storage in lower gradient channels. Use of a published relation between sediment volume, channel width, and gradient predicted about half of the variation in sediment stored upstream from jammed steps. Sediment volume correlates well with beaver pond area. Historically more abundant instream wood and beaver populations likely equated to greater sediment storage within river corridors. This review of the existing literature on wood and sediment dynamics highlights the lack of studies on larger rivers.

How well do the rosgen classification and associated "natural channel design" methods integrate and quantify fluvial processes and channel response?

USGS Publications Warehouse

Simon, A.; Doyle, M.; Kondolf, M.; Shields, F.D.; Rhoads, B.; Grant, G.; Fitzpatrick, F.; Juracek, K.; McPhillips, M.; MacBroom, J.

2005-01-01

Over the past 10 years the Rosgen classification system and its associated methods of "natural channel design" have become synonymous (to many without prior knowledge of the field) with the term "stream restoration" and the science of fluvial geomorphology. Since the mid 1990s, this classification approach has become widely, and perhaps dominantly adopted by governmental agencies, particularly those funding restoration projects. For example, in a request for proposals for the restoration of Trout Creek in Montana, the Natural Resources Conservation Service required "experience in the use and application of a stream classification system and its implementation." Similarly, classification systems have been used in evaluation guides for riparian areas and U.S. Forest Service management plans. Most notably, many highly trained geomorphologists and hydraulic engineers are often held suspect, or even thought incorrect, if their approach does not include reference to or application of a classification system. This, combined with the para-professional training provided by some involved in "natural channel design" empower individuals and groups with limited backgrounds in stream and watershed sciences to engineer wholesale re-patterning of stream reaches using 50-year old technology that was never intended for engineering design. At Level I, the Rosgen classification system consists of eight or nine major stream types, based on hydraulic-geometry relations and four other measures of channel shape to distinguish the dimensions of alluvial stream channels as a function of the bankfull stage. Six classes of the particle size of the boundary sediments are used to further sub-divide each of the major stream types, resulting in 48 or 54 stream types. Aside from the difficulty in identifying bankfull stage, particularly in incising channels, and the issue of sampling from two distinct populations (beds and banks) to classify the boundary sediments, the classification provides a consistent and reproducible means for practitioners to describe channel morphology although difficulties have been encountered in lower-gradient stream systems. Use of the scheme to communicate between users or as a conceptual model, however, has not justified its use for engineering design or for predicting river behavior; its use for designing mitigation projects, therefore, seems beyond its technical scope. Copyright ASCE 2005.

Lithologic and hydraulic controls on network-scale variations in sediment yield: Big Wood and North Fork Big Lost Rivers, Idaho

NASA Astrophysics Data System (ADS)

Mueller, E. R.; Pitlick, J.; Smith, M. E.

2008-12-01

Channel morphology and sediment textures in streams and rivers are a product of the flux of sediment and water conveyed to channel networks. Differences in sediment supply between watersheds should thus be reflected by differences in channel and bed-material properties. In order to address this directly, field measurements of channel morphology, substrate lithology, and bed sediment textures were made at 35 sites distributed evenly across two adjacent watersheds in south-central Idaho, the Big Wood River (BW) and N. Fork Big Lost River (NBL). Measurements of sediment transport indicate a five-fold difference in sediment yields between these basins, despite their geographic proximity. Three dominant lithologic modes (an intrusive and extrusive volcanic suite and a sedimentary suite) exist in different proportions between these basins. The spatial distribution of lithologies exhibits a first-order control on the variation in sediment supply, bed sediment textures, and size distribution of the bed load at the basin outlet. Here we document the coupled hydraulic and sedimentologic structuring of these stream channel networks to differences in sediment supply. The results show that width and depth are remarkably similar between the two basins across a range in channel gradient and drainage area, with the primary difference being decreased bed armoring in the NBL. As a result, dimensionless shear stress (τ*) increases downstream in the NBL with an average value of 0.073, despite declining slope. The opposite is true in the BW where τ* averages 0.048. Lithologic characterization of the substrate indicates that much of the discrepancy in bed armoring can be attributed to an increasing downstream supply of resistant intrusive granitic rocks to the BW, whereas the NBL is dominated by erodible extrusive volcanic and sedimentary rocks. A simple modeling approach using an excess shear stress-based bed load transport equation and observed channel geometry shows that subtle changes in sediment texture can reproduce the marked difference in sediment yield between basins. This suggests that in gravel-bed streams the flux of sediment through the channel network is governed as much by textural changes as by morphological changes, and that these textural changes are tightly coupled to source area lithology.

Efficient method to design RF pulses for parallel excitation MRI using gridding and conjugate gradient

PubMed Central

Feng, Shuo

2014-01-01

Parallel excitation (pTx) techniques with multiple transmit channels have been widely used in high field MRI imaging to shorten the RF pulse duration and/or reduce the specific absorption rate (SAR). However, the efficiency of pulse design still needs substantial improvement for practical real-time applications. In this paper, we present a detailed description of a fast pulse design method with Fourier domain gridding and a conjugate gradient method. Simulation results of the proposed method show that the proposed method can design pTx pulses at an efficiency 10 times higher than that of the conventional conjugate-gradient based method, without reducing the accuracy of the desirable excitation patterns. PMID:24834420

Efficient method to design RF pulses for parallel excitation MRI using gridding and conjugate gradient.

PubMed

Feng, Shuo; Ji, Jim

2014-04-01

Parallel excitation (pTx) techniques with multiple transmit channels have been widely used in high field MRI imaging to shorten the RF pulse duration and/or reduce the specific absorption rate (SAR). However, the efficiency of pulse design still needs substantial improvement for practical real-time applications. In this paper, we present a detailed description of a fast pulse design method with Fourier domain gridding and a conjugate gradient method. Simulation results of the proposed method show that the proposed method can design pTx pulses at an efficiency 10 times higher than that of the conventional conjugate-gradient based method, without reducing the accuracy of the desirable excitation patterns.

Impacts of urbanization on surface sediment quality: evidence from polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) contaminations in the Grand Canal of China.

PubMed

Hong, Youwei; Yu, Shen; Yu, Guangbin; Liu, Yi; Li, Guilin; Wang, Min

2012-06-01

Organic pollutants, especially synthetic organic compounds, can indicate paces of anthropogenic activities. Effects of urbanization on polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) distributions in surface sediment were conducted in urban sections of the Grand Canal, China, consisting of a four-level urbanization gradient. The four-level urbanization gradients include three countryside towns, two small-size cities, three medium-size cities, and a large-size city. Diagnostic ratio analysis and factor analysis-multiple linear regression model were used for source apportionment of PAHs. Sediment quality guidelines (SQGs) of USA and Canada were employed to assess ecological risks of PAHs and PCBs in surface sediments of the Canal. Ranges of PAH and PCB concentrations in surface sediments were 0.66-22 mg/kg and 0.5-93 μg/kg, respectively. Coal-related sources were primary PAH sources and followed by vehicular emission. Total concentration, composition, and source apportionment of PAHs exhibited urbanization gradient effects. Total PCB concentrations increased with the urbanization gradient, while total PAHs concentration in surface sediments presented an inverted U Kuznets curve with the urbanization gradient. Elevated concentrations of both PAHs and PCBs ranged at effect range low levels or interim SQG, assessed by USA and Canadian SQGs. PAHs and PCBs in surface sediments of the Grand Canal showed urbanization gradient effects and low ecological risks.

Contact behavior modelling and its size effect on proton exchange membrane fuel cell

NASA Astrophysics Data System (ADS)

Qiu, Diankai; Peng, Linfa; Yi, Peiyun; Lai, Xinmin; Janßen, Holger; Lehnert, Werner

2017-10-01

Contact behavior between the gas diffusion layer (GDL) and bipolar plate (BPP) is of significant importance for proton exchange membrane fuel cells. Most current studies on contact behavior utilize experiments and finite element modelling and focus on fuel cells with graphite BPPs, which lead to high costs and huge computational requirements. The objective of this work is to build a more effective analytical method for contact behavior in fuel cells and investigate the size effect resulting from configuration alteration of channel and rib (channel/rib). Firstly, a mathematical description of channel/rib geometry is outlined in accordance with the fabrication of metallic BPP. Based on the interface deformation characteristic and Winkler surface model, contact pressure between BPP and GDL is then calculated to predict contact resistance and GDL porosity as evaluative parameters of contact behavior. Then, experiments on BPP fabrication and contact resistance measurement are conducted to validate the model. The measured results demonstrate an obvious dependence on channel/rib size. Feasibility of the model used in graphite fuel cells is also discussed. Finally, size factor is proposed for evaluating the rule of size effect. Significant increase occurs in contact resistance and porosity for higher size factor, in which channel/rib width decrease.

Drainage basins, channels, and flow characteristics of selected streams in central Pennsylvania

USGS Publications Warehouse

Brush, Lucien M.

1961-01-01

The hydraulic, basin, and geologic characteristics of 16 selected streams in central Pennsylvania were measured for the purpose of studying the relations among these general characteristics and their process of development. The basic parameters which were measured include bankfull width and depth, channel slope, bed material size and shape, length of stream from drainage divide, and size of drainage area. The kinds of bedrock over which the streams flow were noted. In these streams the bankfull channel is filled by flows approximating the 2.3-year flood. By measuring the breadth and mean depth of the channel, it was possible to compute the bankfull mean velocity for each of the 119 sampling stations. These data were then used to compute the downstream changes in hydraulic geometry of the streams studied. This method has been called an indirect computation of the hydraulic geometry. The results obtained by the indirect method are similar to those of the direct method of other workers. The basins were studied by examining the relations of drainage area, discharge, and length of stream from drainage divide. For the streams investigated, excellent correlations were found to exist between drainage area and the 2.3-year flood, as well as between length of stream from the basin divide and drainage area. From these correlations it is possible to predict the discharge for the 2.3-year flood at any arbitrary point along the length of the stream. The long, intermediate, and short axes of pebbles sampled from the bed of the stream were recorded to study both size and sphericity changes along individual streams and among the streams studied. No systematic downstream changes in sphericity were found. Particle size changes are erratic and show no consistent relation to channel slope. Particle size decreases downstream in many streams but remains constant or increases in others. Addition of material by tributaries is one factor affecting particle size and another is the parent material. Wear does not appear to account for some of the changes noted in particle size in a downstream direction. Comparison with laboratory studies indicates that at least in some streams the downstream decrease in size is much greater than would be expected from wear alone. The type of bedrock underlying the channels included in this study appears to affect both channel slope and particle size. For a given length of stream, a stream channel underlain by sandstone tends to have a steeper slope and larger bed material than channels underlain by shale or limestone. Hence, a stream which heads in sandstone and ends in limestone tends to have a more rapid decrease in slope and particle size than a stream heading in limestone and ending in sandstone. The association of steep slopes and small particles for limestone channels implies that slope and particle size may show a vague correlation between lithologic groups although no correlation may exist within a given lithologic type. In addition to the effect of bedrock on slope and particle size, there is some evidence that channels in limestone or dolomite have a slightly smaller cross section at bankfull stage than channels in shale or sandstone. Near the headwaters of many of these streams, a deposit of periglacial rubble affects the slope and bed material size. Some of the debris contains residual boulders which are too large to be moved by ordinary floods and, therefore, impose larger particle sizes in the bed of the stream. The addition of this very coarse debris to the bed material is another example of the influence of geologic factors on stream channels even though the channel consists of unconsolidated debris instead of bedrock. The influence of geologic factors noted in selected streams in central Pennsylvania may not be directly applicable to areas other than the Appalachian Mountains, but the general process is no doubt similar in most areas. In large alluvial valleys bedrock cannot be much of an influencing factor; yet large, thick alluvial deposits and terraces are in a sense "bedrock" materials upon which the stream works to form the landscape.

Manipulation of the response of human endothelial colony-forming cells by focal adhesion assembly using gradient nanopattern plates.

PubMed

Cui, Long-Hui; Joo, Hyung Joon; Kim, Dae Hwan; Seo, Ha-Rim; Kim, Jung Suk; Choi, Seung-Cheol; Huang, Li-Hua; Na, Ji Eun; Lim, I-Rang; Kim, Jong-Ho; Rhyu, Im Joo; Hong, Soon Jun; Lee, Kyu Back; Lim, Do-Sun

2018-01-01

Nanotopography plays a pivotal role in the regulation of cellular responses. Nonetheless, little is known about how the gradient size of nanostructural stimuli alters the responses of endothelial progenitor cells without chemical factors. Herein, the fabrication of gradient nanopattern plates intended to mimic microenvironment nanotopography is described. The gradient nanopattern plates consist of nanopillars of increasing diameter ranges [120-200 nm (GP 120/200), 200-280 nm (GP 200/280), and 280-360 nm (GP 280/360)] that were used to screen the responses of human endothelial colony-forming cells (hECFCs). Nanopillars with a smaller nanopillar diameter caused the cell area and perimeter of hECFCs to decrease and their filopodial outgrowth to increase. The structure of vinculin (a focal adhesion marker in hECFCs) was also modulated by nanostructural stimuli of the gradient nanopattern plates. Moreover, Rho-associated protein kinase (ROCK) gene expression was significantly higher in hECFCs cultured on GP 120/200 than in those on flat plates (no nanopillars), and ROCK suppression impaired the nanostructural-stimuli-induced vinculin assembly. These results suggest that the gradient nanopattern plates generate size-specific nanostructural stimuli suitable for manipulation of the response of hECFCs, in a process dependent on ROCK signaling. This is the first evidence of size-specific nanostructure-sensing behavior of hECFCs. Nano feature surfaces are of growing interest as materials for a controlled response of various cells. In this study, we successfully fabricated gradient nanopattern plates to manipulate the response of blood-derived hECFCs without any chemical stimulation. Interestingly, we find that the sensitive nanopillar size for manipulation of hECFCs is range between 120 nm and 200 nm, which decreased the area and increased the filopodial outgrowth of hECFCs. Furthermore, we only modulate the nanopillar size to increase ROCK expression can be an attractive method for modulating the cytoskeletal integrity and focal adhesion of hECFCs. Copyright © 2017 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Autecology of an arsenite chemolithotroph: sulfide constraints on function and distribution in a geothermal spring.

PubMed

D'Imperio, Seth; Lehr, Corinne R; Breary, Michele; McDermott, Timothy R

2007-11-01

Previous studies in an acid-sulfate-chloride spring in Yellowstone National Park found that microbial arsenite [As(III)] oxidation is absent in regions of the spring outflow channel where H(2)S exceeds approximately 5 microM and served as a backdrop for continued efforts in the present study. Ex situ assays with microbial mat samples demonstrated immediate As(III) oxidation activity when H(2)S was absent or at low concentrations, suggesting the presence of As(III) oxidase enzymes that could be reactivated if H(2)S is removed. Cultivation experiments initiated with mat samples taken from along the H(2)S gradient in the outflow channel resulted in the isolation of an As(III)-oxidizing chemolithotroph from the low-H(2)S region of the gradient. The isolate was phylogenetically related to Acidicaldus and was characterized in vitro for spring-relevant properties, which were then compared to its distribution pattern in the spring as determined by denaturing gradient gel electrophoresis and quantitative PCR. While neither temperature nor oxygen requirements appeared to be related to the occurrence of this organism within the outflow channel, H(2)S concentration appeared to be an important constraint. This was verified by in vitro pure-culture modeling and kinetic experiments, which suggested that H(2)S inhibition of As(III) oxidation is uncompetitive in nature. In summary, the studies reported herein illustrate that H(2)S is a potent inhibitor of As(III) oxidation and will influence the niche opportunities and population distribution of As(III) chemolithotrophs.

Autecology of an Arsenite Chemolithotroph: Sulfide Constraints on Function and Distribution in a Geothermal Spring▿

PubMed Central

D'Imperio, Seth; Lehr, Corinne R.; Breary, Michele; McDermott, Timothy R.

2007-01-01

Previous studies in an acid-sulfate-chloride spring in Yellowstone National Park found that microbial arsenite [As(III)] oxidation is absent in regions of the spring outflow channel where H2S exceeds ∼5 μM and served as a backdrop for continued efforts in the present study. Ex situ assays with microbial mat samples demonstrated immediate As(III) oxidation activity when H2S was absent or at low concentrations, suggesting the presence of As(III) oxidase enzymes that could be reactivated if H2S is removed. Cultivation experiments initiated with mat samples taken from along the H2S gradient in the outflow channel resulted in the isolation of an As(III)-oxidizing chemolithotroph from the low-H2S region of the gradient. The isolate was phylogenetically related to Acidicaldus and was characterized in vitro for spring-relevant properties, which were then compared to its distribution pattern in the spring as determined by denaturing gradient gel electrophoresis and quantitative PCR. While neither temperature nor oxygen requirements appeared to be related to the occurrence of this organism within the outflow channel, H2S concentration appeared to be an important constraint. This was verified by in vitro pure-culture modeling and kinetic experiments, which suggested that H2S inhibition of As(III) oxidation is uncompetitive in nature. In summary, the studies reported herein illustrate that H2S is a potent inhibitor of As(III) oxidation and will influence the niche opportunities and population distribution of As(III) chemolithotrophs. PMID:17827309

Efficient Multi-Dimensional Simulation of Quantum Confinement Effects in Advanced MOS Devices

NASA Technical Reports Server (NTRS)

Biegel, Bryan A.; Ancona, Mario G.; Rafferty, Conor S.; Yu, Zhiping

2000-01-01

We investigate the density-gradient (DG) transport model for efficient multi-dimensional simulation of quantum confinement effects in advanced MOS devices. The formulation of the DG model is described as a quantum correction ot the classical drift-diffusion model. Quantum confinement effects are shown to be significant in sub-100nm MOSFETs. In thin-oxide MOS capacitors, quantum effects may reduce gate capacitance by 25% or more. As a result, the inclusion of quantum effects may reduce gate capacitance by 25% or more. As a result, the inclusion of quantum effects in simulations dramatically improves the match between C-V simulations and measurements for oxide thickness down to 2 nm. Significant quantum corrections also occur in the I-V characteristics of short-channel (30 to 100 nm) n-MOSFETs, with current drive reduced by up to 70%. This effect is shown to result from reduced inversion charge due to quantum confinement of electrons in the channel. Also, subthreshold slope is degraded by 15 to 20 mV/decade with the inclusion of quantum effects via the density-gradient model, and short channel effects (in particular, drain-induced barrier lowering) are noticeably increased.

Quantification of Water Flux in Vesicular Systems.

PubMed

Hannesschläger, Christof; Barta, Thomas; Siligan, Christine; Horner, Andreas

2018-06-04

Water transport across lipid membranes is fundamental to all forms of life and plays a major role in health and disease. However, not only typical water facilitators like aquaporins facilitate water flux, but also transporters, ion channels or receptors represent potent water pathways. The efforts directed towards a mechanistic understanding of water conductivity determinants in transmembrane proteins, the development of water flow inhibitors, and the creation of biomimetic membranes with incorporated membrane proteins or artificial water channels depend on reliable and accurate ways of quantifying water permeabilities P f . A conventional method is to subject vesicles to an osmotic gradient in a stopped-flow device: Fast recordings of scattered light intensity are converted into the time course of vesicle volume change. Even though an analytical solution accurately acquiring P f from scattered light intensities exists, approximations potentially misjudging P f by orders of magnitude are used. By means of computational and experimental data we point out that erroneous results such as that the single channel water permeability p f depends on the osmotic gradient are direct results of such approximations. Finally, we propose an empirical solution of which calculated permeability values closely match those calculated with the analytical solution in the relevant range of parameters.

Grain size indicators of sedimentary coupling between hillslopes and channels in a dryland basin

NASA Astrophysics Data System (ADS)

Hollings, Rory; Michealides, Katerina; Bliss Singer, Michael

2017-04-01

In dryland landscapes, heterogeneous and short-lived rainstorms generate runoff on slopes and streamflow in channels, which drive sediment movement from hillslope surfaces to channels and the transport of bed material sediment within channels. Long-term topographic evolution of drainage basins is partly determined by the relative balance of hillslope sediment supply to channels and the evacuation of channel sediment. However, it is not clear whether supply or evacuation is dominant over longer timescales (>>100 y) within dryland basins. One important indicator of local cumulative sediment transport is grain size (GS). On dryland hillslopes, grain size is governed over long timescales by weathering, but on short time scales (events to decades), is controlled by event-driven transport of the debris mantle. In the channel, GS reflects the input of hillslope sediment and the selective transport of particles along the bed. It is currently unknown how these two processes are expressed systematically within GS distributions on slopes and in channels within drylands, but this information could be useful to explain the history of the relative balance between hillslope sediment supply to channels and net sediment transport in the channel. We investigate this problem by combining field measurements of surface sediment grain size distributions in channels and on hillslopes with 1m LiDAR topography, >60 years of rainfall and channel discharge data from the Walnut Gulch Experimental Watershed (WGEW) in Arizona, and simple calculations of grain-sized based local stress distributions for various rainfall and discharge events. Hydrological scenarios of overland flow on hillslopes and channel flow conditions were derived from distributions of historic data at WGEW and were selected to reflect the wide range of storm intensities and durations, and channel discharges. 1) We used three quartiles of the entire distribution of measured discharge values for 80 locations throughout the channel network to represent low, medium and high flows. 2) For rainfall we used three quartiles of the entire distribution of measured rainfall intensity and duration from 85 rain gauges spanning the basin, to derive low, medium and high rainfall durations. We then calculated the corresponding rainfall intensities based on four intensity-duration curves that were characteristic of different parts of the phase space of the measured data-points. 3) The derived rainfall intensities and durations were converted into hillslope overland flow using Coup2D (a hillslope rainfall-runoff model) for 44 hillslopes within WGEW for which we have GS and topographic data. We employ the median grain size (D50) to compare stress metrics on hillslopes and in channel for each location. Typically, low-order streams experience greater influxes of hillslope derived sediment than is evacuated by the channel. However, the main channel stem is characterised by sediment removal in most scenarios including low discharge, long duration rainfall, suggesting most hillslope supplied sediment is balanced by channel evacuation. Near tributary junctions, and close to the mouth of the basin there are fluctuations in net balance of sediment transport from evacuation- to supply-dominance for different scenarios. These fluctuations could influence channel bed GS distribution and longitudinal profile development.

Coral reef monitoring in the Iles Eparses, Mozambique Channel (2011-2013)

NASA Astrophysics Data System (ADS)

Chabanet, P.; Bigot, L.; Nicet, J.-B.; Durville, P.; Massé, L.; Mulochau, T.; Russo, C.; Tessier, E.; Obura, D.

2016-04-01

Monitoring of coral reefs has become a major tool for understanding how they are changing, and for managing them in a context of increasing degradation of coastal ecosystems. The Global Coral Reef Monitoring Network (GCRMN) has near-global coverage, but there are few remote sites free of direct human impact that can serve as reference sites. This study provides baseline data for the French Iles Eparses in the Mozambique Channel, Western Indian Ocean (WIO), whose coral reefs are little known owing to their limited accessibility, and have been free from fishing pressure for over 20 years. Surveys of coral reef health and fish community structure were undertaken at four of the islands (Europa, Bassas da India, Juan de Nova and Glorieuses) in 2011-2013. Monitoring was conducted using standardized GCRMN methods for benthos and fish communities, at the highest taxonomic level. Benthic cover showed a latitudinal gradient, with higher coral cover and conversely lower algae cover (60% and 14% respectively) in the south of the Mozambique Channel. This could be due to the geomorphology of the islands, the latitudinal temperature gradient, and/or the history of chronic stress and bleaching events during the last decades. Fish also showed a latitudinal gradient with higher diversity in the north, in a center of diversity for the western Indian Ocean already recognized for corals. An exceptional biomass fish was recorded (approximately 3500 kg/ha excluding sharks, compared to a maximum of 1400 kg/ha elsewhere in the WIO). The presence of large predators and sharks in all the islands as well as the absence of fleshy benthic algae were indicators of the good health of the reef systems. Nevertheless, these islands are beginning to experience illegal fishing, particularly in the north of the Mozambique Channel, demonstrating their vulnerability to exploitation and the need to protect them as reference sites for coral reef studies, including of climate change impacts, for the region and globally.

On-Chip Pressure Generation for Driving Liquid Phase Separations in Nanochannels.

PubMed

Xia, Ling; Choi, Chiwoong; Kothekar, Shrinivas C; Dutta, Debashis

2016-01-05

In this Article, we describe the generation of pressure gradients on-chip for driving liquid phase separations in submicrometer deep channels. The reported pressure-generation capability was realized by applying an electrical voltage across the interface of two glass channel segments with different depths. A mismatch in the electroosmotic flow rate at this junction led to the generation of pressure-driven flow in our device, a fraction of which was then directed to an analysis channel to carry out the desired separation. Experiments showed the reported strategy to be particularly conducive for miniaturization of pressure-driven separations yielding flow velocities in the separation channel that were nearly unaffected upon scaling down the depth of the entire fluidic network. Moreover, the small dead volume in our system allowed for high dynamic control over this pressure gradient, which otherwise was challenging to accomplish during the sample injection process using external pumps. Pressure-driven velocities up to 3.1 mm/s were realized in separation ducts as shallow as 300 nm using our current design for a maximum applied voltage of 3 kV. The functionality of this integrated device was demonstrated by implementing a pressure-driven ion chromatographic analysis that relied on analyte interaction with the nanochannel surface charges to yield a nonuniform solute concentration across the channel depth. Upon coupling such analyte distribution to the parabolic pressure-driven flow profile in the separation duct, a mixture of amino acids could be resolved. The reported assay yielded a higher separation resolution compared to its electrically driven counterpart in which sample migration was realized using electroosmosis/electrophoresis.

Measuring and controlling the transport of magnetic nanoparticles

NASA Astrophysics Data System (ADS)

Stephens, Jason R.

Despite the large body of literature describing the synthesis of magnetic nanoparticles, few analytical tools are commonly used for their purification and analysis. Due to their unique physical and chemical properties, magnetic nanoparticles are appealing candidates for biomedical applications and analytical separations. Yet in the absence of methods for assessing and assuring their purity, the ultimate use of magnetic particles and heterostructures is likely to be limited. For magnetic nanoparticles, it is the use of an applied magnetic flux or field gradient that enables separations. Flow based techniques are combined with applied magnetic fields to give methods such as magnetic field flow fractionation and high gradient magnetic separation. Additional techniques have been explored for manipulating particles in microfluidic channels and in mesoporous membranes. This thesis further describes development of these and new analytical tools for separation and analysis of colloidal particles is critically important to enable the practical use of these, particularly for medicinal purposes. Measurement of transport of nanometer scale particles through porous media is important to begin to understand the potential environmental impacts of nanomaterials. Using a diffusion cell with two compartments separated by either a porous alumina or polycarbonate membrane as a model system, diffusive flux through mesoporous materials is examined. Experiments are performed as a function of particle size, pore diameter, and solvent, and the particle fluxes are monitored by the change in absorbance of the solution in the receiving cell. Using the measured extinction coefficient and change in absorbance of the solution as a function of time, the fluxes of 3, 8, and 14 nm diameter CoFe2O4 particles are determined as they are translocated across pores with diameters 30, 50, 100, and 200 nm in hexane and aqueous solutions. In general, flux decreases with increasing particle size and increases with pore diameter. We find that fluxes are faster in aqueous solutions than in hexane, which is attributed to the hydrophilic nature of the porous membranes and differences in wettability. The impact of an applied magnetic flux gradient, which induces magnetization and motion, on permeation is also examined. Surface chemistry plays an important role in determining flux through porous media such as in the environment. Diffusive flux of nanoparticles through alkylsilane modified porous alumina is measured as a model for understanding transport in porous media of differing surface chemistries. Experiments are performed as a function of particle size, pore diameter, attached hydrocarbon chain length and chain terminus, and solvent. Particle fluxes are monitored by the change in absorbance of the solution in the receiving side of a diffusion cell. In general, flux increases when the membranes are modified with alkylsilanes compared to untreated membranes, which is attributed to the hydrophobic nature of the porous membranes and differences in wettability. We find that flux decreases, in both hexane and aqueous solutions, when the hydrocarbon chain lining the interior pore wall increases in length. The rate and selectivity of transport across these membranes is related to the partition coefficient (Kp) and the diffusion coefficient (D) of the permeating species. By conducting experiments as a function of initial particle concentration, we find that KpD increases with increasing particle size, is greater in alkylsilane--modified pores, and larger in hexane solution than water. The impact of the alkylsilane terminus (--CH3, --Br, --NH2, --COOH) on permeation in water is also examined. In water, the highest KpD is observed when the membranes are modified with carboxylic acid terminated silanes and lowest with amine terminated silanes as a result of electrostatic effects during translocation. Finally, the manipulation of magnetic nanoparticles for the controlled formation of linked nanoparticle assemblies between microfluidic channels by the application of an external magnet is discussed. Two orthogonal channels were prepared using standard PDMS techniques with pressure-driven flow used to deliver the Fe3O4 and Au nanoparticle reactants. Nanoparticle assembly formation is based upon locally confined surface modification of Fe3O4 nanoparticles interacting with Au nanoparticles bridging the two particles together. For the magnetic particles, transfer between flow streams is greatly increased by placing a permanent magnet above and below the channel intersections. Multiple configurations of Fe3O 4 and Au nanoparticle assemblies are observed as a function of flow rate and interaction time of the individual nanoparticle components. We observe the formation of higher order assemblies by increasing the concentration of Fe3O4 nanoparticles introduced to the microfluidic device. This technique demonstrates the ability to form nanoparticle linked assemblies and could be easily linked to other analytical techniques developed in our lab to further isolate and separate a particular product. (Abstract shortened by UMI.)

Comparison of erosion and channel characteristics

USGS Publications Warehouse

Parker, Gene W.

1998-01-01

Erosion was observed at 33 percent of 22,495 bridge sites in nine States. Among sites with erosion, 56 percent were associated with skewed flows, curved channels, or a combination of these two conditions, and at 18 percent of the sites, channels were straight with steep bank angles. The remaining 26 percent are sites with observable erosion at piers or abutments on straight channels. Comparison of the sites with erosion to channel bed-material indicate that 44 percent of the single-span sites had gravel-size or smaller bed material and 70 percent of the multiple-span sites had gravel-size or smaller bed material.

Calcium dynamics in tomato pollen tubes using the Yellow Cameleon 3.6 sensor.

PubMed

Barberini, María Laura; Sigaut, Lorena; Huang, Weijie; Mangano, Silvina; Juarez, Silvina Paola Denita; Marzol, Eliana; Estevez, José; Obertello, Mariana; Pietrasanta, Lía; Tang, Weihua; Muschietti, Jorge

2018-06-01

In vitro tomato pollen tubes show a cytoplasmic calcium gradient that oscillates with the same period as growth. Pollen tube growth requires coordination between the tip-focused cytoplasmic calcium concentration ([Ca 2+ ] cyt ) gradient and the actin cytoskeleton. This [Ca 2+ ] cyt gradient is necessary for exocytosis of small vesicles, which contributes to the delivery of new membrane and cell wall at the pollen tube tip. The mechanisms that generate and maintain this [Ca 2+ ] cyt gradient are not completely understood. Here, we studied calcium dynamics in tomato (Solanum lycopersicum) pollen tubes using transgenic tomato plants expressing the Yellow Cameleon 3.6 gene under the pollen-specific promoter LAT52. We use tomato as an experimental model because tomato is a Solanaceous plant that is easy to transform, and has an excellent genomic database and genetic stock center, and unlike Arabidopsis, tomato pollen is a good system to do biochemistry. We found that tomato pollen tubes showed an oscillating tip-focused [Ca 2+ ] cyt gradient with the same period as growth. Then, we used a pharmacological approach to disturb the intracellular Ca 2+ homeostasis, evaluating how the [Ca 2+ ] cyt gradient, pollen germination and in vitro pollen tube growth were affected. We found that cyclopiazonic acid (CPA), a drug that inhibits plant P IIA -type Ca 2+ -ATPases, increased [Ca 2+ ] cyt in the subapical zone, leading to the disappearance of the Ca 2+ oscillations and inhibition of pollen tube growth. In contrast, 2-aminoethoxydiphenyl borate (2-APB), an inhibitor of Ca 2+ released from the endoplasmic reticulum to the cytoplasm in animals cells, completely reduced [Ca 2+ ] cyt at the tip of the tube, blocked the gradient and arrested pollen tube growth. Although both drugs have antagonistic effects on [Ca 2+ ] cyt , both inhibited pollen tube growth triggering the disappearance of the [Ca 2+ ] cyt gradient. When CPA and 2-APB were combined, their individual inhibitory effects on pollen tube growth were partially compensated. Finally, we found that GsMTx-4, a peptide from spider venom that blocks stretch-activated Ca 2+ channels, inhibited tomato pollen germination and had a heterogeneous effect on pollen tube growth, suggesting that these channels are also involved in the maintenance of the [Ca 2+ ] cyt gradient. All these results indicate that tomato pollen tube is an excellent model to study calcium dynamics.

Particle size variations between bed load and bed material in natural gravel bed channels

Treesearch

Thomas E. Lisle

1995-01-01

Abstract - Particle sizes of bed load and bed material that represent materials transported and stored over a period of years are used to investigate selective transport in 13 previously sampled, natural gravel bed channels. The ratio (D*) of median particle size of bed material to the transport- and frequency-weighted mean of median bed load size decreases to unity...

Log Distribution, Persistence, and Geomorphic Function in Streams and Rivers, in the Northeastern U.S.

NASA Astrophysics Data System (ADS)

St Pierre, L.; Burchsted, D.; Warren, D.

2015-12-01

Large wood provides critical ecosystem services such as fish habitat, temperature regulation and bank stabilization. In the northeastern U.S., the distribution of large wood is documented; however, there is little understanding of the movement, longevity and geomorphic function. This research examines the hypothesis that tree species control the persistence and geomorphic function of instream wood in the Appalachian region of the northeastern U.S. To do this, we assessed size, location, and species of logs in New Hampshire rivers, including locations in the White Mountain National Forest (WMNF) where these data were collected ten years ago. We expanded the previous dataset to include assessment of geomorphic function, including creation of diversion channels, pool formation, and sediment storage, among others. We also added new sites in the WMNF and sites on a large rural river in southwestern NH to increase the range of geomorphic variables to now include: confined and unconfined channels; 1st to 4th order streams; low to high gradient; meandering, multithreaded, and straight channels; and land use such as historic logging, modern agriculture, and post-agricultural abandonment. At each study site, we located all large logs (>10cm diameter, > 1m length) and log jams (>3 accumulated logs that provide a geomorphic function) along 100m-700m reaches. We marked each identified log with a numbered tag and recorded species, diameter, length, orientation, GPS location, tag number, and photographs. We assessed function and accumulation, decay, stability, and source classes for each log. Along each reach we measured riparian forest composition and structure and channel width. Preliminary analysis suggests that tree species significantly affects the function of logs: yellow birch and American sycamore are highly represented. Additionally, geomorphic setting also plays a primary role, where unconfined reaches have large logs that provide important functions; those functions are rarely contributed by logs in confined channels. Land use limit the ability of logs to provide habitat for vegetation recruitment, notable in rivers adjacent to agricultural areas that maintain a straight channel; invasive vegetation dominate the banks and there is little to no recruitment of native vegetation.

Effects of urbanization on stream ecosystems along an agriculture-to-urban land-use gradient, Milwaukee to Green Bay, Wisconsin, 2003-2004

USGS Publications Warehouse

Richards, Kevin D.; Scudder, Barbara C.; Fitzpatrick, Faith A.; Steuer, Jeffery J.; Bell, Amanda H.; Peppler, Marie C.; Stewart, Jana S.; Harris, Mitchell A.

2010-01-01

In 2003 and 2004, 30 streams near Milwaukee and Green Bay, Wisconsin, were part of a national study by the U.S. Geological Survey to assess urbanization effects on physical, chemical, and biological characteristics along an agriculture-to-urban land-use gradient. A geographic information system was used to characterize natural landscape features that define the environmental setting and the degree of urbanization within each stream watershed. A combination of land cover, socioeconomic, and infrastructure variables were integrated into a multi-metric urban intensity index, scaled from 0 to 100, and assigned to each stream site to identify a gradient of urbanization within relatively homogeneous environmental settings. The 35 variables used to develop the final urban intensity index characterized the degree of urbanization and included road infrastructure (road area and road traffic index), 100-meter riparian land cover (percentage of impervious surface, shrubland, and agriculture), watershed land cover (percentage of impervious surface, developed/urban land, shrubland, and agriculture), and 26 socioeconomic variables (U.S. Census Bureau, 2001). Characteristics examined as part of this study included: habitat, hydrology, stream temperature, water chemistry (chloride, sulfate, nutrients, dissolved and particulate organic and inorganic carbon, pesticides, and suspended sediment), benthic algae, benthic invertebrates, and fish. Semipermeable membrane devices (SPMDs) were used to assess the potential for bioconcentration of hydrophobic organic contaminants (specifically polycyclic aromatic hydrocarbons, polychlorinated biphenyls, and organochlorine and pyrethroid insecticides) in biological membranes, such as the gills of fish. Physical habitat measurements reflective of channel enlargement, including bankfull channel size and bank erosion, increased with increasing urbanization within the watershed. In this study, percentage of riffles and streambed substrate size were more strongly related to local geologic setting, slope, watershed topography, and river-engineering practices than to urbanization. Historical local river-engineering features such as channelization, bank stabilization, and grade controls may have confounded relations among habitat characteristics and urbanization. A number of hydrologic-condition metrics (including flashiness and duration of high flow during pre- or post-ice periods) showed strong relations to the urban intensity index. Hydrologic-condition metrics cannot be used alone to predict habitat or geomorphic change. Chloride and SPMD measures of potential toxicity and polycyclic aromatic hydrocarbon concentrations showed the strongest positive correlations to urbanization including increases in road infrastructure, percentage of impervious surface in the watershed, urban land cover, and land-distribution related to urban land cover. This suggests that automobiles and the infrastructure required to support automobiles are a significant source of these compounds in this study area. Chloride in spring and summer showed a significant positive correlation with the urban intensity index; concentrations increased with increasing road infrastructure, urban land cover, and a number of landscape variables related to urbanization. Spring concentrations of sulfate, prometon, and diazinon correlated to fewer urban characteristics than chloride, including increases in road infrastructure, percentage of impervious surface, and urban land cover. Changes in biological communities correlated to the urban intensity index or individual urban-associated variables. Decreased percentages of pollution-sensitive diatoms and diatoms requiring high dissolved-oxygen saturation correlated to increases in the percentage of developed urban land, total impervious surface, stream flashiness, population density, road-area density, and decreases in the percentage of wetland in the watershed. Invertebrate taxa richness and Coleop

Fast three-dimensional inner volume excitations using parallel transmission and optimized k-space trajectories.

PubMed

Davids, Mathias; Schad, Lothar R; Wald, Lawrence L; Guérin, Bastien

2016-10-01

To design short parallel transmission (pTx) pulses for excitation of arbitrary three-dimensional (3D) magnetization patterns. We propose a joint optimization of the pTx radiofrequency (RF) and gradient waveforms for excitation of arbitrary 3D magnetization patterns. Our optimization of the gradient waveforms is based on the parameterization of k-space trajectories (3D shells, stack-of-spirals, and cross) using a small number of shape parameters that are well-suited for optimization. The resulting trajectories are smooth and sample k-space efficiently with few turns while using the gradient system at maximum performance. Within each iteration of the k-space trajectory optimization, we solve a small tip angle least-squares RF pulse design problem. Our RF pulse optimization framework was evaluated both in Bloch simulations and experiments on a 7T scanner with eight transmit channels. Using an optimized 3D cross (shells) trajectory, we were able to excite a cube shape (brain shape) with 3.4% (6.2%) normalized root-mean-square error in less than 5 ms using eight pTx channels and a clinical gradient system (Gmax  = 40 mT/m, Smax  = 150 T/m/s). This compared with 4.7% (41.2%) error for the unoptimized 3D cross (shells) trajectory. Incorporation of B0 robustness in the pulse design significantly altered the k-space trajectory solutions. Our joint gradient and RF optimization approach yields excellent excitation of 3D cube and brain shapes in less than 5 ms, which can be used for reduced field of view imaging and fat suppression in spectroscopy by excitation of the brain only. Magn Reson Med 76:1170-1182, 2016. © 2015 Wiley Periodicals, Inc. © 2015 Wiley Periodicals, Inc.

Deep sea sedimentation processes and geomorphology: Northwest Atlantic continental margin

NASA Astrophysics Data System (ADS)

Mosher, David; Campbell, Calvin; Gardner, Jim; Chaytor, Jason; Piper, David; Rebesco, Michele

2017-04-01

Deep-sea sedimentation processes impart a fundamental control on the morphology of the western North Atlantic continental margin from Blake Spur to Hudson Strait. This fact is illustrated by the variable patterns of cross-margin gradients that are based on extensive new multibeam echo-sounder data informed by subbottom profiler and seismic reflection data. Erosion by off-shelf sediment transport in turbidity currents creates gullies, canyons and channels and a steep upper slope. Amalgamation of these conduits produces singular channels and turbidite fan complexes on the lower slope, flattening slope-profile gradients. The effect is an exponentially decaying "graded" slope profile. Comparatively, sediment mass failure produces steeper upper slopes due to head scarp development and a wedging architecture to the lower slope as deposits thin in the downslope direction. This process results in either a "stepped" slope, and/or a significant downslope gradient change where MTDs pinch out. Large drift deposits created by geostrophic currents are developed all along the margin. Blake Ridge, Sackville Spur, and Hamilton Spur are large detached drifts on disparate parts of the margin. They form a linear "above grade" profile along their crests from the shelf to abyssal plain. Deeper portions of the US continental margin are dominated by the Chesapeake Drift and Hatteras Outer Ridge; both plastered elongate mounded drifts. Farther north, particularly on the Grand Banks margin, are plastered and separated drifts. These drifts form "stepped" slope profiles, where they onlap the margin. Trough-mouth fan complexes become more common along the margin with increasing latitude. Sediment deposition and retention, particularly those dominated by glacigenic debris flows, characterize these segments producing an "above grade" slope profile. Understanding these geomorphological consequences of deep sea sedimentation processes is important to extended continental shelf mapping in which gradients and gradient change is a critical metric.

SDSS-IV MaNGA: global stellar population and gradients for about 2000 early-type and spiral galaxies on the mass-size plane

NASA Astrophysics Data System (ADS)

Li, Hongyu; Mao, Shude; Cappellari, Michele; Ge, Junqiang; Long, R. J.; Li, Ran; Mo, H. J.; Li, Cheng; Zheng, Zheng; Bundy, Kevin; Thomas, Daniel; Brownstein, Joel R.; Roman Lopes, Alexandre; Law, David R.; Drory, Niv

2018-05-01

We perform full spectrum fitting stellar population analysis and Jeans Anisotropic modelling of the stellar kinematics for about 2000 early-type galaxies (ETGs) and spiral galaxies from the MaNGA DR14 sample. Galaxies with different morphologies are found to be located on a remarkably tight mass plane which is close to the prediction of the virial theorem, extending previous results for ETGs. By examining an inclined projection (`the mass-size' plane), we find that spiral and early-type galaxies occupy different regions on the plane, and their stellar population properties (i.e. age, metallicity, and stellar mass-to-light ratio) vary systematically along roughly the direction of velocity dispersion, which is a proxy for the bulge fraction. Galaxies with higher velocity dispersions have typically older ages, larger stellar mass-to-light ratios and are more metal rich, which indicates that galaxies increase their bulge fractions as their stellar populations age and become enriched chemically. The age and stellar mass-to-light ratio gradients for low-mass galaxies in our sample tend to be positive (centre < outer), while the gradients for most massive galaxies are negative. The metallicity gradients show a clear peak around velocity dispersion log10 σe ≈ 2.0, which corresponds to the critical mass ˜3 × 1010 M⊙ of the break in the mass-size relation. Spiral galaxies with large mass and size have the steepest gradients, while the most massive ETGs, especially above the critical mass Mcrit ≳ 2 × 1011 M⊙, where slow rotator ETGs start dominating, have much flatter gradients. This may be due to differences in their evolution histories, e.g. mergers.

Model of separation performance of bilinear gradients in scanning format counter-flow gradient electrofocusing techniques.

PubMed

Shameli, Seyed Mostafa; Glawdel, Tomasz; Ren, Carolyn L

2015-03-01

Counter-flow gradient electrofocusing allows the simultaneous concentration and separation of analytes by generating a gradient in the total velocity of each analyte that is the sum of its electrophoretic velocity and the bulk counter-flow velocity. In the scanning format, the bulk counter-flow velocity is varying with time so that a number of analytes with large differences in electrophoretic mobility can be sequentially focused and passed by a single detection point. Studies have shown that nonlinear (such as a bilinear) velocity gradients along the separation channel can improve both peak capacity and separation resolution simultaneously, which cannot be realized by using a single linear gradient. Developing an effective separation system based on the scanning counter-flow nonlinear gradient electrofocusing technique usually requires extensive experimental and numerical efforts, which can be reduced significantly with the help of analytical models for design optimization and guiding experimental studies. Therefore, this study focuses on developing an analytical model to evaluate the separation performance of scanning counter-flow bilinear gradient electrofocusing methods. In particular, this model allows a bilinear gradient and a scanning rate to be optimized for the desired separation performance. The results based on this model indicate that any bilinear gradient provides a higher separation resolution (up to 100%) compared to the linear case. This model is validated by numerical studies. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Improved Cloud Condensation Nucleus Spectrometer

NASA Technical Reports Server (NTRS)

Leu, Ming-Taun

2010-01-01

An improved thermal-gradient cloud condensation nucleus spectrometer (CCNS) has been designed to provide several enhancements over prior thermal- gradient counters, including fast response and high-sensitivity detection covering a wide range of supersaturations. CCNSs are used in laboratory research on the relationships among aerosols, supersaturation of air, and the formation of clouds. The operational characteristics of prior counters are such that it takes long times to determine aerosol critical supersaturations. Hence, there is a need for a CCNS capable of rapid scanning through a wide range of supersaturations. The present improved CCNS satisfies this need. The improved thermal-gradient CCNS (see Figure 1) incorporates the following notable features: a) The main chamber is bounded on the top and bottom by parallel thick copper plates, which are joined by a thermally conductive vertical wall on one side and a thermally nonconductive wall on the opposite side. b) To establish a temperature gradient needed to establish a supersaturation gradient, water at two different regulated temperatures is pumped through tubes along the edges of the copper plates at the thermally-nonconductive-wall side. Figure 2 presents an example of temperature and supersaturation gradients for one combination of regulated temperatures at the thermally-nonconductive-wall edges of the copper plates. c) To enable measurement of the temperature gradient, ten thermocouples are cemented to the external surfaces of the copper plates (five on the top plate and five on the bottom plate), spaced at equal intervals along the width axis of the main chamber near the outlet end. d) Pieces of filter paper or cotton felt are cemented onto the interior surfaces of the copper plates and, prior to each experimental run, are saturated with water to establish a supersaturation field inside the main chamber. e) A flow of monodisperse aerosol and a dilution flow of humid air are introduced into the main chamber at the inlet end. The inlet assembly is designed to offer improved (relative to prior such assemblies) laminar-flow performance within the main chamber. Dry aerosols are subjected to activation and growth in the supersaturation field. f) After aerosol activation, at the outlet end of the main chamber, a polished stainless-steel probe is used to sample droplets into a laser particle counter. The probe features an improved design for efficient sampling. The counter has six channels with size bins in the range of 0.5- to 5.0-micron diameter. g) To enable efficient sampling, the probe is scanned along the width axis of the main chamber (thereby effecting scanning along the temperature gradient and thereby, further, effecting scanning along the supersaturation gradient) by means of a computer-controlled translation stage.

Morphology, structure, composition and build-up processes of the active channel-mouth lobe complex of the Congo deep-sea fan with inputs from remotely operated underwater vehicle (ROV) multibeam and video surveys

NASA Astrophysics Data System (ADS)

Dennielou, Bernard; Droz, Laurence; Babonneau, Nathalie; Jacq, Céline; Bonnel, Cédric; Picot, Marie; Le Saout, Morgane; Saout, Yohan; Bez, Martine; Savoye, Bruno; Olu, Karine; Rabouille, Christophe

2017-08-01

The detailed structure and composition of turbiditic channel-mouth lobes is still largely unknown because they commonly lie at abyssal water depths, are very thin and are therefore beyond the resolution of hull-mound acoustic tools. The morphology, structure and composition of the Congo turbiditic channel-mouth lobe complex (90×40 km; 2525 km2) were investigated with hull-mounted swath bathymetry, air gun seismics, 3.5 kHz sub-bottom profiler, sediment piston cores and also with high-resolution multibeam bathymetry and video acquired with a Remote Operating Vehicle (ROV). The lobe complex lies 760 km off the Congo River mouth in the Angola abyssal plain between 4740 and 5030 m deep. It is active and is fed by turbidity currents that deposit several centimetres of sediment per century. The lobe complex is subdivided into five lobes that have prograded. The lobes are dominantly muddy. Sand represents ca. 13% of the deposits and is restricted to the feeding channel and distributaries. The overall lobe body is composed of thin muddy to silty turbidites. The whole lobe complex is characterized by in situ mass wasting (slumps, debrites). The 1-m-resolution bathymetry shows pervasive slidings and block avalanches on the edges of the feeding channel and the channel mouth indicating that sliding occurs early and continuously in the lobe build-up. Mass wasting is interpreted as a consequence of very-high accumulation rates, over-steepening and erosion along the channels and is therefore an intrinsic process of lobe building. The bifurcation of feeding channels is probably triggered when the gradient in the distributaries at the top of a lobe becomes flat and when turbidity currents find their way on the higher gradient on the lobe side. It may also be triggered by mass wasting on the lobe side. When a new lobe develops, the abandoned lobes continue to collect significant turbiditic deposits from the feeding channel spillover, so that the whole lobe complex remains active. A conceptual lithostratigraphic model is proposed for five morpho-sedimentary environments: lobe rims, lobe body, distributaries, levees, feeding channel. This study shows that high-resolution bathymetry ROV observations are necessary to fully understand the build-up processes of modern channel-mouth lobes.

Vegetative impacts upon bedload transport capacity and channel stability for differing alluvial planforms in the Yellow River source zone

NASA Astrophysics Data System (ADS)

Li, Zhi Wei; Yu, Guo An; Brierley, Gary; Wang, Zhao Yin

2016-07-01

The influence of vegetation upon bedload transport and channel morphodynamics is examined along a channel stability gradient ranging from meandering to anabranching to anabranching-braided to fully braided planform conditions along trunk and tributary reaches of the Upper Yellow River in western China. Although the regional geology and climate are relatively consistent across the study area, there is a distinct gradient in the presence and abundance of riparian vegetation for these reaches atop the Qinghai-Tibet Plateau (elevations in the study area range from 2800 to 3400 m a.s.l.). To date, the influence of vegetative impacts upon channel planform and bedload transport capacity of alluvial reaches of the Upper Yellow River remains unclear because of a lack of hydrological and field data. In this region, the types and pattern of riparian vegetation vary with planform type as follows: trees exert the strongest influence in the anabranching reach, the meandering reach flows through meadow vegetation, the anabranching-braided reach has a grass, herb, and sparse shrub cover, and the braided reach has no riparian vegetation. A non-linear relation between vegetative cover on the valley floor and bedload transport capacity is evident, wherein bedload transport capacity is the highest for the anabranching reach, roughly followed by the anabranching-braided, braided, and meandering reaches. The relationship between the bedload transport capacity of a reach and sediment supply from upstream exerts a significant influence upon channel stability. Bedload transport capacity during the flood season (June-September) in the braided reach is much less than the rate of sediment supply, inducing bed aggradation and dynamic channel adjustments. Rates of channel adjustment are less pronounced for the anabranching-braided and anabranching reaches, while the meandering reach is relatively stable (i.e., this is a passive meandering reach).

In situ synthesis of bilayered gradient poly(vinyl alcohol)/hydroxyapatite composite hydrogel by directional freezing-thawing and electrophoresis method.

PubMed

Su, Cui; Su, Yunlan; Li, Zhiyong; Haq, Muhammad Abdul; Zhou, Yong; Wang, Dujin

2017-08-01

Bilayered poly(vinyl alcohol) (PVA)/hydroxyapatite (HA) composite hydrogels with anisotropic and gradient mechanical properties were prepared by the combination of directional freezing-thawing (DFT) and electrophoresis method. Firstly, PVA hydrogels with aligned channel structure were prepared by the DFT method. Then, HA nanoparticles were in situ synthesized within the PVA hydrogels via electrophoresis. By controlling the time of the electrophoresis process, a bilayered gradient hydrogel containing HA particles in only half of the gel region was obtained. The PVA/HA composite hydrogel exhibited gradient mechanical strength depending on the distance to the cathode. The gradient initial tensile modulus ranging from 0.18MPa to 0.27MPa and the gradient initial compressive modulus from 0.33MPa to 0.51MPa were achieved. The binding strength of the two regions was relatively high and no apparent internal stress or defect was observed at the boundary. The two regions of the bilayered hydrogel also showed different osteoblast cell adhesion properties. Copyright © 2017 Elsevier B.V. All rights reserved.

Development of Erosive Burning Models for CFD Predictions of Solid Rocket Motor Internal Environments

NASA Technical Reports Server (NTRS)

Wang, Qun-Zhen

2003-01-01

Four erosive burning models, equations (11) to (14). are developed in this work by using a power law relationship to correlate (1) the erosive burning ratio and the local velocity gradient at propellant surfaces; (2) the erosive burning ratio and the velocity gradient divided by centerline velocity; (3) the erosive burning difference and the local velocity gradient at propellant surfaces; and (4) the erosive burning difference and the velocity gradient divided by centerline velocity. These models depend on the local velocity gradient at the propellant surface (or the velocity gradient divided by centerline velocity) only and, unlike other empirical models, are independent of the motor size. It was argued that, since the erosive burning is a local phenomenon occurring near the surface of the solid propellant, the erosive burning ratio should be independent of the bore diameter if it is correlated with some local flow parameters such as the velocity gradient at the propellant surface. This seems to be true considering the good results obtained by applying these models, which are developed from the small size 5 inch CP tandem motor testing, to CFD simulations of much bigger motors.

Inhibition of KV7 Channels Protects the Rat Heart against Myocardial Ischemia and Reperfusion Injury.

PubMed

Hedegaard, Elise R; Johnsen, Jacob; Povlsen, Jonas A; Jespersen, Nichlas R; Shanmuganathan, Jeffrey A; Laursen, Mia R; Kristiansen, Steen B; Simonsen, Ulf; Bøtker, Hans Erik

2016-04-01

The voltage-gated KV7 (KCNQ) potassium channels are activated by ischemia and involved in hypoxic vasodilatation. We investigated the effect of KV7 channel modulation on cardiac ischemia and reperfusion injury and its interaction with cardioprotection by ischemic preconditioning (IPC). Reverse-transcription polymerase chain reaction revealed expression of KV7.1, KV7.4, and KV7.5 in the left anterior descending rat coronary artery and all KV7 subtypes (KV7.1-KV7.5) in the left and right ventricles of the heart. Isolated hearts were subjected to no-flow global ischemia and reperfusion with and without IPC. Infarct size was quantified by 2,3,5-triphenyltetrazolium chloride staining. Two blockers of KV7 channels, XE991 [10,10-bis(4-pyridinylmethyl)-9(10H)-anthracenone] (10 µM) and linopirdine (10 µM), reduced infarct size and exerted additive infarct reduction to IPC. An opener of KV7 channels, flupirtine (10 µM) abolished infarct size reduction by IPC. Hemodynamics were measured using a catheter inserted in the left ventricle and postischemic left ventricular recovery improved in accordance with reduction of infarct size and deteriorated with increased infarct size. XE991 (10 µM) reduced coronary flow in the reperfusion phase and inhibited vasodilatation in isolated small branches of the left anterior descending coronary artery during both simulated ischemia and reoxygenation. KV7 channels are expressed in rat coronary arteries and myocardium. Inhibition of KV7 channels exerts cardioprotection and opening of KV7 channels abrogates cardioprotection by IPC. Although safety issues should be further addressed, our findings suggest a potential role for KV7 blockers in the treatment of ischemia-reperfusion injury. Copyright © 2016 by The American Society for Pharmacology and Experimental Therapeutics.

Modeling the morphogenesis of brine channels in sea ice.

PubMed

Kutschan, B; Morawetz, K; Gemming, S

2010-03-01

Brine channels are formed in sea ice under certain constraints and represent a habitat of different microorganisms. The complex system depends on a number of various quantities as salinity, density, pH value, or temperature. Each quantity governs the process of brine channel formation. There exists a strong link between bulk salinity and the presence of brine drainage channels in growing ice with respect to both the horizontal and vertical planes. We develop a suitable phenomenological model for the formation of brine channels both referring to the Ginzburg-Landau theory of phase transitions as well as to the chemical basis of morphogenesis according to Turing. It is possible to conclude from the critical wave number on the size of the structure and the critical parameters. The theoretically deduced transition rates have the same magnitude as the experimental values. The model creates channels of similar size as observed experimentally. An extension of the model toward channels with different sizes is possible. The microstructure of ice determines the albedo feedback and plays therefore an important role for large-scale global circulation models.

The transverse dynamics of flow in a tidal channel within a greater strait

NASA Astrophysics Data System (ADS)

Khosravi, Maziar; Siadatmousavi, Seyed Mostafa; Vennell, Ross; Chegini, Vahid

2018-02-01

Vessel-mounted ADCP measurements were conducted to describe the transverse structure of flow between the two headland tips in Khuran Channel, south of Iran (26° 45' N), where the highest tidal velocities in spring tides were 1.8 m/s. Current profiles were obtained using a 614.4 kHz TRDI WorkHorse Broadband ADCP over nine repetitions of three cross-channel transects during one semidiurnal tidal cycle. The 2.2-km-long transects ran north/south across the channel. A least-square fit to semidiurnal, quarter-diurnal, and sixth diurnal harmonics was used to separate the tidal signals from the observed flow. Spatial gradients showed that the greatest lateral shears and convergences were found over the northern channel and near the northern headland tip due to very sharp bathymetric changes in this area. Contrary to the historical assumption, the across-channel momentum balance in the Khuran Channel was ageostrophic. The current study represents one of the few examples reported where the lateral friction influences the across-channel momentum balance.

Transcoronary gradients of HDL-associated MicroRNAs in unstable coronary artery disease.

PubMed

Choteau, Sébastien A; Cuesta Torres, Luisa F; Barraclough, Jennifer Y; Elder, Alexander M M; Martínez, Gonzalo J; Chen Fan, William Y; Shrestha, Sudichhya; Ong, Kwok L; Barter, Philip J; Celermajer, David S; Rye, Kerry-Anne; Patel, Sanjay; Tabet, Fatiha

2018-02-15

MicroRNAs (miRNAs) are transported on high-density lipoproteins (HDLs) and HDL-associated miRNAs are involved in intercellular communication. We explored HDL-associated miRNAs concentration gradients across the coronary circulation in stable and unstable coronary artery disease patients and whether changes in the transcoronary gradient were associated with changes in HDL composition and size. Acute coronary syndrome (ACS, n=17) patients, those with stable coronary artery disease (stable CAD, n=19) and control subjects without CAD (n=6) were studied. HDLs were isolated from plasma obtained from the coronary sinus (CS), aortic root (arterial blood) and right atrium (venous blood). HDL-associated miRNAs (miR-16, miR-20a, miR-92a, miR-126, miR-222 and miR-223) were quantified by TaqMan miRNA assays. HDL particle sizes were determined by non-denaturing polyacrylamide gradient gel electrophoresis. HDL composition was measured immunoturbidometrically or enzymatically. A concentration gradient across the coronary circulation was observed for all the HDL-associated miRNAs. In ACS patients, there was a significant inverse transcoronary gradient for HDL-associated miR-16, miR-92a and miR-223 (p<0.05) compared to patients with stable CAD. Changes in HDL-miRNA transcoronary gradients were not associated with changes in HDL composition or size. HDLs are depleted of miR-16, miR-92a and miR-223 during the transcoronary passage in patients with ACS compared to patients with stable CAD. Copyright © 2017 Elsevier Ireland Ltd. All rights reserved.

Valleys and Hillslopes: A Geomorphic Foundation for Landscape Ecology

NASA Astrophysics Data System (ADS)

Martin, Y. E.; Johnson, E. A.

2004-12-01

Moisture-nutrient gradients have been found to be the most important environmental gradients determining the distribution and composition of plant communities. Landscapes on which plant communities exist are composed of valleys and ridgelines, with hillslopes in between them. Since water flow paths are directed down slopes, processes determining hillslope morphology and arrangement play an essential role in plant community organization and dynamics. Hillslope morphology, substrate characteristics and climate determine flow routing and water budgets along slopes. Wetness is a function of transmissivity, contributing area and slope gradient. Movement of nutrients along hillslopes generally follows wetness values, and is affected by soil type. Plant species have different tolerances to wetness and nutrients; hillslope length and slope angle determine the moisture-nutrient gradient, and in turn the shape of plant tolerance curves. Temporal scales required for significant topographic change along hillslopes may often be long compared to those for plant community dynamics. When considered in landscape ecology, hillslope shape and arrangement are thus often considered constants. Although landscape morphology may change over time and among different regions (with tectonic, geomorphic and climatic processes leaving their imprints on landscapes), an attempt has been made in the literature to put forth robust topographic scaling relations. This paper, using a series of examples, explores connections between landscape structure and plant communities. For example, Hack's law states that drainage basins become more elongate as area increases. This implies that basins should have approximately the same proportion of landscape in each hillslope position, suggesting some constancy in contributing area patterns for hillslopes in different-sized basins. Distributions of wetness values and plant population tolerance curves seem to confirm this for smaller basins. Hillslope length and steepness are related to drainage density and relative relief. Various studies have sought relations between drainage density and slope gradient; the latter is a determinant of wetness values. Studies have found both negative and positive correlations between drainage density and slope gradient. The nature of hillslope processes (e.g., overland flow vs. mass wasting dominated, or quickly eroding vs. slowly eroding landscapes) has been used to explain the correlation. It has also been suggested that the degree of channelization may be important in determining slope steepness. Plant species respond to steeper slopes by having narrower tolerance curves and less overlap with other species. This has important implications for biodiversity and plant community organization.

Contribution of a Sodium Ion Gradient to Energy Conservation during Fermentation in the Cyanobacterium Arthrospira (Spirulina) maxima CS-328 ▿ †

PubMed Central

Carrieri, Damian; Ananyev, Gennady; Lenz, Oliver; Bryant, Donald A.; Dismukes, G. Charles

2011-01-01

Sodium gradients in cyanobacteria play an important role in energy storage under photoautotrophic conditions but have not been well studied during autofermentative metabolism under the dark, anoxic conditions widely used to produce precursors to fuels. Here we demonstrate significant stress-induced acceleration of autofermentation of photosynthetically generated carbohydrates (glycogen and sugars) to form excreted organic acids, alcohols, and hydrogen gas by the halophilic, alkalophilic cyanobacterium Arthrospira (Spirulina) maxima CS-328. When suspended in potassium versus sodium phosphate buffers at the start of autofermentation to remove the sodium ion gradient, photoautotrophically grown cells catabolized more intracellular carbohydrates while producing 67% higher yields of hydrogen, acetate, and ethanol (and significant amounts of lactate) as fermentative products. A comparable acceleration of fermentative carbohydrate catabolism occurred upon dissipating the sodium gradient via addition of the sodium-channel blocker quinidine or the sodium-ionophore monensin but not upon dissipating the proton gradient with the proton-ionophore dinitrophenol (DNP). The data demonstrate that intracellular energy is stored via a sodium gradient during autofermentative metabolism and that, when this gradient is blocked, the blockage is compensated by increased energy conversion via carbohydrate catabolism. PMID:21890670

Results for diffusion-weighted imaging with a fourth-channel gradient insert.

PubMed

Feldman, Rebecca E; Scholl, Timothy J; Alford, Jamu K; Handler, William B; Harris, Chad T; Chronik, Blaine A

2011-12-01

Diffusion-weighted imaging suffers from motion artifacts and relatively low signal quality due to the long echo times required to permit the diffusion encoding. We investigated the inclusion of a noncylindrical fourth gradient coil, dedicated entirely to diffusion encoding, into the imaging system. Standard three-axis whole body gradients were used during image acquisition, but we designed and constructed an insert coil to perform diffusion encodings. We imaged three phantoms on a 3-T system with a range of diffusion coefficients. Using the insert gradient, we were able to encode b values of greater than 1300 s/mm(2) with an echo time of just 83 ms. Images obtained using the insert gradient had higher signal to noise ratios than those obtained using the whole body gradient: at 500 s/mm(2) there was a 18% improvement in signal to noise ratio, at 1000 s/mm(2) there was a 39% improvement in signal to noise ratio, and at 1350 s/mm(2) there was a 56% improvement in signal to noise ratio. Using the insert gradient, we were capable of doing diffusion encoding at high b values by using relatively short echo times. Copyright © 2011 Wiley Periodicals, Inc.

Ground-plane influences on size estimation in early visual processing.

PubMed

Champion, Rebecca A; Warren, Paul A

2010-07-21

Ground-planes have an important influence on the perception of 3D space (Gibson, 1950) and it has been shown that the assumption that a ground-plane is present in the scene plays a role in the perception of object distance (Bruno & Cutting, 1988). Here, we investigate whether this influence is exerted at an early stage of processing, to affect the rapid estimation of 3D size. Participants performed a visual search task in which they searched for a target object that was larger or smaller than distracter objects. Objects were presented against a background that contained either a frontoparallel or slanted 3D surface, defined by texture gradient cues. We measured the effect on search performance of target location within the scene (near vs. far) and how this was influenced by scene orientation (which, e.g., might be consistent with a ground or ceiling plane, etc.). In addition, we investigated how scene orientation interacted with texture gradient information (indicating surface slant), to determine how these separate cues to scene layout were combined. We found that the difference in target detection performance between targets at the front and rear of the simulated scene was maximal when the scene was consistent with a ground-plane - consistent with the use of an elevation cue to object distance. In addition, we found a significant increase in the size of this effect when texture gradient information (indicating surface slant) was present, but no interaction between texture gradient and scene orientation information. We conclude that scene orientation plays an important role in the estimation of 3D size at an early stage of processing, and suggest that elevation information is linearly combined with texture gradient information for the rapid estimation of 3D size. Copyright 2010 Elsevier Ltd. All rights reserved.

Dynamics of bedload size and rate during snow and glacier melting in a high-gradient Andean stream

NASA Astrophysics Data System (ADS)

Mao, Luca; Carrillo, Ricardo

2016-04-01

The evaluation and prediction of coarse sediment movement and transport is crucial for understanding and predicting fluvial morphodynamics, and for designing flood hazard mitigation structures and stream habitat restoration. At the scale of single flood event, the relationship between water discharge (Q) and bedload rate (Qs) often reveals hysteretic loops. If Qs peaks before Q the hysteresis is clockwise and this suggests a condition of unlimited sediment supply. In contrast, counterclockwise hysteresis would suggest limited sediment supply conditions. Understanding the direction and magnitude of hysteresis at the single flood event can thus reveal the sediment availability. Also, interpreting temporal trend of hysteresis could be used to infer the dynamics of sediment sources. This work is focused in the temporal trend of hysteresis pattern of bedload transport in a small (27 km2) glaciarized catchment in the Andes of central Chile (Estero Morales) from 2014 to 2015. Bedload is measured using a 0.5 m long Japanese acoustic pipe sensor fixed on the channel bed, which register the intensity of impulses generated by the impact of sediments on the sensor. Based on flume and field measurements, the sensor was calibrated as to provide intensity of transported sediments. Also, direct bedload samplings were taken within a range of 0.01 - 1000 g s-1 m-1) sediment transport rates, and allowed to assess median and maximum grain size of transported sediments. The analysis reveals that hysteresis at the scale of single flood tends to be clockwise during snowmelt and early glaciermelting, whereas counterclockwise hysteresis is dominant during the late glaciermelting. Also, bedload transport rates and grain size of transported sediments reduces progressively from early to late glaciermelting. Interestingly, direct bedload samplings revealed that grain size of transported sediments tends to exhibit a counterclockwise hysteresis when the sediment transport is clockwise. Thus during the snowmelt and early glaciermelting, sediment availability appears to be unlimited and hysteresis can be ascribed to pulses of sediments coming from the proglacial area. Instead, as the glaciermelting season progresses, sediment availability decreases probably due to the progressive exhaustion of sediments stored in the channel bed, and counterclockwise hysteresis can be ascribed to changes in the organization of the surface sediments at the scale of clusters. Results highlight the complex relationships between dynamics of sediment sources at the basin scale and changes in channel sediment storage overtime, resulting in abrupt changes in rate and size of sediment transport. Long-term assessment of these dynamics using indirect methods to assess bedload transport can provide important insights for understanding probable trajectories of morphological evolution of glacierized streams which are subject to rapid environmental changes. This research is being developed within the framework of Project FONDECYT 1130378.

Microfluidic electrochemical reactors

DOEpatents

Nuzzo, Ralph G [Champaign, IL; Mitrovski, Svetlana M [Urbana, IL

2011-03-22

A microfluidic electrochemical reactor includes an electrode and one or more microfluidic channels on the electrode, where the microfluidic channels are covered with a membrane containing a gas permeable polymer. The distance between the electrode and the membrane is less than 500 micrometers. The microfluidic electrochemical reactor can provide for increased reaction rates in electrochemical reactions using a gaseous reactant, as compared to conventional electrochemical cells. Microfluidic electrochemical reactors can be incorporated into devices for applications such as fuel cells, electrochemical analysis, microfluidic actuation, pH gradient formation.

A novel microfluidic flow focusing method

PubMed Central

Jiang, Hai; Weng, Xuan; Li, Dongqing

2014-01-01

A new microfluidic method that allows hydrodynamic focusing in a microchannel with two sheath flows is demonstrated. The microchannel network consists of a T-shaped main channel and two T-shaped branch channels. The flows of the sample stream and the sheath streams in the microchannel are generated by electroosmotic flow-induced pressure gradients. In comparison with other flow focusing methods, this novel method does not expose the sample to electrical field, and does not need any external pumps, tubing, and valves. PMID:25538810

Active and hibernating turbulence in minimal channel flow of newtonian and polymeric fluids.

PubMed

Xi, Li; Graham, Michael D

2010-05-28

Turbulent channel flow of drag-reducing polymer solutions is simulated in minimal flow geometries. Even in the Newtonian limit, we find intervals of "hibernating" turbulence that display many features of the universal maximum drag reduction asymptote observed in polymer solutions: weak streamwise vortices, nearly nonexistent streamwise variations, and a mean velocity gradient that quantitatively matches experiments. As viscoelasticity increases, the frequency of these intervals also increases, while the intervals themselves are unchanged, leading to flows that increasingly resemble maximum drag reduction.

Estimation of roughness coefficients for natural stream channels with vegetated banks

USGS Publications Warehouse

Coon, William F.

1998-01-01

Roughness coefficients for 21 stream sites in New York state are presented. The site-specific relation between roughness coefficent and flow depth varies in a predictable manner, depending on energy gradient, relative smoothness (Rd50), and channel-vegetation density. The percentage of wetted perimeter that is vegetated is a useful indicator of when streambank vegetation can affect the roughness coefficient. To estimate the magnitude of this effect requires evaluation of the density and percent of submergence of vegetation.

Free energy dissipation of the spontaneous gating of a single voltage-gated potassium channel.

PubMed

Wang, Jia-Zeng; Wang, Rui-Zhen

2018-02-01

Potassium channels mainly contribute to the resting potential and re-polarizations, with the potassium electrochemical gradient being maintained by the pump Na + /K + -ATPase. In this paper, we construct a stochastic model mimicking the kinetics of a potassium channel, which integrates temporal evolving of the membrane voltage and the spontaneous gating of the channel. Its stationary probability density functions (PDFs) are found to be singular at the boundaries, which result from the fact that the evolving rates of voltage are greater than the gating rates of the channel. We apply PDFs to calculate the power dissipations of the potassium current, the leakage, and the gating currents. On a physical perspective, the essential role of the system is the K + -battery charging the leakage (L-)battery. A part of power will inevitably be dissipated among the process. So, the efficiency of energy transference is calculated.

Structure of a CLC chloride ion channel by cryo-electron microscopy

PubMed Central

Park, Eunyong; Campbell, Ernest B.; MacKinnon, Roderick

2017-01-01

CLC proteins transport chloride (Cl−) ions across cellular membranes to regulate muscle excitability, electrolyte movement across epithelia, and acidification of intracellular organelles. Some CLC proteins are channels that conduct Cl− ions passively, whereas others are secondary active transporters that exchange two Cl− ions for one H+. The structural basis underlying these distinctive transport mechanisms is puzzling because CLC channels and transporters are expected to share the same architecture based on sequence homology. To solve this puzzle we determined the structure of a mammalian CLC channel (CLC-K) using cryo-electron microscopy. A conserved loop in the Cl− transport pathway shows a structure markedly different from that of CLC transporters. Consequently, the cytosolic constriction for Cl− passage is widened in CLC-K such that the kinetic barrier previously postulated for Cl−/H+ transporter function would be reduced. Thus, reduction of a kinetic barrier in CLC channels enables fast flow of Cl− down its electrochemical gradient. PMID:28002411

Demonstration of a positron beam-driven hollow channel plasma wakefield accelerator

NASA Astrophysics Data System (ADS)

Gessner, Spencer; Adli, Erik; Allen, James M.; An, Weiming; Clarke, Christine I.; Clayton, Chris E.; Corde, Sebastien; Delahaye, J. P.; Frederico, Joel; Green, Selina Z.; Hast, Carsten; Hogan, Mark J.; Joshi, Chan; Lindstrøm, Carl A.; Lipkowitz, Nate; Litos, Michael; Lu, Wei; Marsh, Kenneth A.; Mori, Warren B.; O'Shea, Brendan; Vafaei-Najafabadi, Navid; Walz, Dieter; Yakimenko, Vitaly; Yocky, Gerald

2016-06-01

Plasma wakefield accelerators have been used to accelerate electron and positron particle beams with gradients that are orders of magnitude larger than those achieved in conventional accelerators. In addition to being accelerated by the plasma wakefield, the beam particles also experience strong transverse forces that may disrupt the beam quality. Hollow plasma channels have been proposed as a technique for generating accelerating fields without transverse forces. Here we demonstrate a method for creating an extended hollow plasma channel and measure the wakefields created by an ultrarelativistic positron beam as it propagates through the channel. The plasma channel is created by directing a high-intensity laser pulse with a spatially modulated profile into lithium vapour, which results in an annular region of ionization. A peak decelerating field of 230 MeV m-1 is inferred from changes in the beam energy spectrum, in good agreement with theory and particle-in-cell simulations.

Free energy dissipation of the spontaneous gating of a single voltage-gated potassium channel

NASA Astrophysics Data System (ADS)

Wang, Jia-Zeng; Wang, Rui-Zhen

2018-02-01

Potassium channels mainly contribute to the resting potential and re-polarizations, with the potassium electrochemical gradient being maintained by the pump Na+/K+-ATPase. In this paper, we construct a stochastic model mimicking the kinetics of a potassium channel, which integrates temporal evolving of the membrane voltage and the spontaneous gating of the channel. Its stationary probability density functions (PDFs) are found to be singular at the boundaries, which result from the fact that the evolving rates of voltage are greater than the gating rates of the channel. We apply PDFs to calculate the power dissipations of the potassium current, the leakage, and the gating currents. On a physical perspective, the essential role of the system is the K+-battery charging the leakage (L-)battery. A part of power will inevitably be dissipated among the process. So, the efficiency of energy transference is calculated.

Design of Octupole Channel for Integrable Optics Test Accelerator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Antipov, Sergey; Carlson, Kermit; Castellotti, Riccardo

We present the design of octupole channel for Integrable Optics Test Accelerator (IOTA). IOTA is a test accelerator at Fermilab, aimed to conduct research towards high-intensity machines. One of the goals of the project is to demonstrate high nonlinear betatron tune shifts while retaining large dynamic aperture in a realistic accelerator design. At the first stage the tune shift will be attained with a special channel of octupoles, which creates a variable octupole potential over a 1.8 m length. The channel consists of 18 identical air-cooled octupole magnets. The magnets feature a simple low-cost design, while meeting the requirements onmore » maximum gradient - up to 1.4 kG/cm³, and field quality - strength of harmonics below 1%. Numerical simulations show that the channel is capable of producing a nonlinear tune shift of 0.08 without restriction of dynamic aperture of the ring.« less

Demonstration of a positron beam-driven hollow channel plasma wakefield accelerator

PubMed Central

Gessner, Spencer; Adli, Erik; Allen, James M.; An, Weiming; Clarke, Christine I.; Clayton, Chris E.; Corde, Sebastien; Delahaye, J. P.; Frederico, Joel; Green, Selina Z.; Hast, Carsten; Hogan, Mark J.; Joshi, Chan; Lindstrøm, Carl A.; Lipkowitz, Nate; Litos, Michael; Lu, Wei; Marsh, Kenneth A.; Mori, Warren B.; O'Shea, Brendan; Vafaei-Najafabadi, Navid; Walz, Dieter; Yakimenko, Vitaly; Yocky, Gerald

2016-01-01

Plasma wakefield accelerators have been used to accelerate electron and positron particle beams with gradients that are orders of magnitude larger than those achieved in conventional accelerators. In addition to being accelerated by the plasma wakefield, the beam particles also experience strong transverse forces that may disrupt the beam quality. Hollow plasma channels have been proposed as a technique for generating accelerating fields without transverse forces. Here we demonstrate a method for creating an extended hollow plasma channel and measure the wakefields created by an ultrarelativistic positron beam as it propagates through the channel. The plasma channel is created by directing a high-intensity laser pulse with a spatially modulated profile into lithium vapour, which results in an annular region of ionization. A peak decelerating field of 230 MeV m−1 is inferred from changes in the beam energy spectrum, in good agreement with theory and particle-in-cell simulations. PMID:27250570

Slip Effects on Mixed Convective Peristaltic Transport of Copper-Water Nanofluid in an Inclined Channel

PubMed Central

Abbasi, Fahad Munir; Hayat, Tasawar; Ahmad, Bashir; Chen, Guo-Qian

2014-01-01

Peristaltic transport of copper-water nanofluid in an inclined channel is reported in the presence of mixed convection. Both velocity and thermal slip conditions are considered. Mathematical modelling has been carried out using the long wavelength and low Reynolds number approximations. Resulting coupled system of equations is solved numerically. Quantities of interest are analyzed through graphs. Numerical values of heat transfer rate at the wall for different parameters are obtained and examined. Results showed that addition of copper nanoparticles reduces the pressure gradient, axial velocity at the center of channel, trapping and temperature. Velocity slip parameter has a decreasing effect on the velocity near the center of channel. Temperature of nanofluid increases with increase in the Grashoff number and channel inclination angle. It is further concluded that the heat transfer rate at the wall increases considerably in the presence of copper nanoparticles. PMID:25170908

A hybrid six-dimensional muon cooling channel using gas filled rf cavities

DOE PAGES

Stratakis, D.

2017-09-25

We describe an alternative cooling approach to prevent rf breakdown in magnetic fields that simultaneously reduces all six phase-space dimensions of a muon beam. In this process, cooling is accomplished by reducing the beam momentum through ionization energy loss in discrete absorbers and replenishing the momentum loss only in the longitudinal direction through gas-filled rf cavities. The advantage of gas filled cavities is that they can run at high gradients in magnetic fields without breakdown. Using this approach, we show that our channel can achieve a decrease of the 6-dimensional phase-space volume by several orders of magnitude. With the aidmore » of numerical simulations, we demonstrate that the transmission of our proposed channel is comparable to that of an equivalent channel with vacuum rf cavities. Finally, we discuss the sensitivity of the channel performance to the choice of gas and operating pressure.« less

A hybrid six-dimensional muon cooling channel using gas filled rf cavities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stratakis, D.

We describe an alternative cooling approach to prevent rf breakdown in magnetic fields that simultaneously reduces all six phase-space dimensions of a muon beam. In this process, cooling is accomplished by reducing the beam momentum through ionization energy loss in discrete absorbers and replenishing the momentum loss only in the longitudinal direction through gas-filled rf cavities. The advantage of gas filled cavities is that they can run at high gradients in magnetic fields without breakdown. Using this approach, we show that our channel can achieve a decrease of the 6-dimensional phase-space volume by several orders of magnitude. With the aidmore » of numerical simulations, we demonstrate that the transmission of our proposed channel is comparable to that of an equivalent channel with vacuum rf cavities. Finally, we discuss the sensitivity of the channel performance to the choice of gas and operating pressure.« less

Electrokinetic mixing vortices due to electrolyte depletion at microchannel junctions.

PubMed

Takhistov, Paul; Duginova, Ksenia; Chang, Hsueh-Chia

2003-07-01

Due to electric field leakage across sharp corners, the irrotational character of Ohmic electroosmotic flow is violated. Instead, we demonstrate experimentally and theoretically evidence of electrolyte depletion and vortex separation in electroosmotic flow around a junction between wide and narrow channels. When the penetration length of the electric field exceeds the width of the narrow channel and if the electric field is directed from the narrow to the wide channel, the electromigration of ions diminishes significantly at the junction end of the narrow channel due to this leakage. Concentration depletion then develops at that location to maintain current balance but it also increases the corner zeta potential and the local electroosmotic slip velocity. A back pressure gradient hence appears to maintain flow balance and, at a sufficient magnitude, generates a pair of vortices.

Quantum state transfer through time reversal of an optical channel

NASA Astrophysics Data System (ADS)

Hush, M. R.; Bentley, C. D. B.; Ahlefeldt, R. L.; James, M. R.; Sellars, M. J.; Ugrinovskii, V.

2016-12-01

Rare-earth ions have exceptionally long coherence times, making them an excellent candidate for quantum information processing. A key part of this processing is quantum state transfer. We show that perfect state transfer can be achieved by time reversing the intermediate quantum channel, and suggest using a gradient echo memory (GEM) to perform this time reversal. We propose an experiment with rare-earth ions to verify these predictions, where an emitter and receiver crystal are connected with an optical channel passed through a GEM. We investigate the effect experimental imperfections and collective dynamics have on the state transfer process. We demonstrate that super-radiant effects can enhance coupling into the optical channel and improve the transfer fidelity. We lastly discuss how our results apply to state transfer of entangled states.

Plasmon-driven acceleration in a photo-excited nanotube

DOE PAGES

Shin, Young -Min

2017-02-21

A plasmon-assisted channeling acceleration can be realized with a large channel, possibly at the nanometer scale. Carbon nanotubes (CNTs) are the most typical example of nano-channels that can confine a large number of channeled particles in a photon-plasmon coupling condition. This paper presents a theoretical and numerical study on the concept of high-field charge acceleration driven by photo-excited Luttinger-liquid plasmons in a nanotube. An analytic description of the plasmon-assisted laser acceleration is detailed with practical acceleration parameters, in particular, with the specifications of a typical tabletop femtosecond laser system. Lastly, the maximally achievable acceleration gradients and energy gains within dephasingmore » lengths and CNT lengths are discussed with respect to laser-incident angles and CNT-filling ratios.« less

Ice in Channels and Ice-Rock Mixtures in Valleys on Mars: Did They Slide on Deformable Rubble Like Antarctic Ice Streams?

NASA Technical Reports Server (NTRS)

Lucchitta, B. K.

1997-01-01

Recent studies of ice streams in Antarctica reveal a mechanism of basal motion that may apply to channels and valleys on Mars. The mechanism is sliding of the ice on deformable water-saturated till under high pore pressures. It has been suggested by Lucchitta that ice was present in outflow channels on Mars and gave them their distinctive morphology. This ice may have slid like Antarctic ice streams but on rubbly weathering products rather than till. However, to generate water under high pore pressures, elevated heatflow is needed to melt the base of the ice. Either volcanism or higher heatflow more than 2 b.y. ago could have raised the basal temperature. Regarding valley networks, higher heatflow 3 b.y. ago could have allowed sliding of ice-saturated overburden at a few hundred meters depth. If the original, pristine valleys were somewhat deeper than they are now, they could have formed by the same mechanism. Recent sounding of the seafloor in front of the Ross Ice Shelf in Antarctica reveals large persistent patterns of longitudinal megaflutes and drumlinoid forms, which bear remarkable resemblance to longitudinal grooves and highly elongated streamlined islands found on the floors of martian outflow channels. The flutes are interpreted to have formed at the base of ice streams during the last glacial advance. Additional similarities of Antarctic ice streams with martian outflow channels are apparent. Antarctic ice streams are 30 to 80 km wide and hundreds of kilometers long. Martian outflow channels have similar dimensions. Ice stream beds are below sea level. Carr determined that most common floor elevations of martian outflow channels lie below martian datum, which may have been close to or below past martian sea levels. The Antarctic ice stream bed gradient is flat and locally may go uphill, and surface slopes are exceptionally. Martian channels also have floor gradients that are shallow or go uphill locally and have low surface gradients. The depth to the bed in ice streams is 1 to 1.5 km. At bankful stage, the depth of the fluid in outflow channels was 1 to 2 km, according to the height of bordering scarps. The similarity between Antarctic ice streams and martian outflow channels suggests that ice may have flowed through and shaped the outflow channels, and that perhaps the mechanism of motion of Antarctic ice streams also operated in outflow channels. In addition, sliding on deformable rubble may explain the formation of small valley networks. The large Siple Coast Antarctic ice streams are thought to slide over longitudinally grooved, deforming till, where much of the movement is within the till. The till is saturated with water at high pore pressures that nearly supports all of the weight of the ice. The small differential between overburden pressure and pore pressure at the bed is more important than the volume of water, but water needs to be supplied to the till interface. For pore pressures to remain high, the ice streams have to act as a seal that blocks the flow of water through them, and the rock underneath has to be of low permeability to prevent the water from draining away.

Modeling of the Dorsal Gradient across Species Reveals Interaction between Embryo Morphology and Toll Signaling Pathway during Evolution

PubMed Central

Koslen, Hannah R.; Chiel, Hillel J.; Mizutani, Claudia Mieko

2014-01-01

Morphogenetic gradients are essential to allocate cell fates in embryos of varying sizes within and across closely related species. We previously showed that the maternal NF-κB/Dorsal (Dl) gradient has acquired different shapes in Drosophila species, which result in unequally scaled germ layers along the dorso-ventral axis and the repositioning of the neuroectodermal borders. Here we combined experimentation and mathematical modeling to investigate which factors might have contributed to the fast evolutionary changes of this gradient. To this end, we modified a previously developed model that employs differential equations of the main biochemical interactions of the Toll (Tl) signaling pathway, which regulates Dl nuclear transport. The original model simulations fit well the D. melanogaster wild type, but not mutant conditions. To broaden the applicability of this model and probe evolutionary changes in gradient distributions, we adjusted a set of 19 independent parameters to reproduce three quantified experimental conditions (i.e. Dl levels lowered, nuclear size and density increased or decreased). We next searched for the most relevant parameters that reproduce the species-specific Dl gradients. We show that adjusting parameters relative to morphological traits (i.e. embryo diameter, nuclear size and density) alone is not sufficient to reproduce the species Dl gradients. Since components of the Tl pathway simulated by the model are fast-evolving, we next asked which parameters related to Tl would most effectively reproduce these gradients and identified a particular subset. A sensitivity analysis reveals the existence of nonlinear interactions between the two fast-evolving traits tested above, namely the embryonic morphological changes and Tl pathway components. Our modeling further suggests that distinct Dl gradient shapes observed in closely related melanogaster sub-group lineages may be caused by similar sequence modifications in Tl pathway components, which are in agreement with their phylogenetic relationships. PMID:25165818

A z-gradient array for simultaneous multi-slice excitation with a single-band RF pulse.

PubMed

Ertan, Koray; Taraghinia, Soheil; Sadeghi, Alireza; Atalar, Ergin

2018-07-01

Multi-slice radiofrequency (RF) pulses have higher specific absorption rates, more peak RF power, and longer pulse durations than single-slice RF pulses. Gradient field design techniques using a z-gradient array are investigated for exciting multiple slices with a single-band RF pulse. Two different field design methods are formulated to solve for the required current values of the gradient array elements for the given slice locations. The method requirements are specified, optimization problems are formulated for the minimum current norm and an analytical solution is provided. A 9-channel z-gradient coil array driven by independent, custom-designed gradient amplifiers is used to validate the theory. Performance measures such as normalized slice thickness error, gradient strength per unit norm current, power dissipation, and maximum amplitude of the magnetic field are provided for various slice locations and numbers of slices. Two and 3 slices are excited by a single-band RF pulse in simulations and phantom experiments. The possibility of multi-slice excitation with a single-band RF pulse using a z-gradient array is validated in simulations and phantom experiments. Magn Reson Med 80:400-412, 2018. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

Post-fire hillslope debris flows: Evidence of a distinct erosion process

NASA Astrophysics Data System (ADS)

Langhans, Christoph; Nyman, Petter; Noske, Philip J.; Van der Sant, Rene E.; Lane, Patrick N. J.; Sheridan, Gary J.

2017-10-01

After wildfire a hitherto unexplained erosion process that some authors have called 'miniature debris flows on hillslopes' and that leave behind levee-lined rills has been observed in some regions of the world. Despite the unusual proposition of debris flow on planar hillslopes, the process has not received much attention. The objectives of this study were to (1) accumulate observational evidence of Hillslope Debris Flows (HDF) as we have defined the process, to (2) understand their initiation process by conducting runoff experiments on hillslopes, to (3) propose a conceptual model of HDF, and to (4) contrast and classify HDF relative to other erosion and transport processes in the post-wildfire hillslope domain. HDF have been observed at relatively steep slope gradients (0.4-0.8), on a variety of geologies, and after fire of at least moderate severity and consist of a lobe of gravel- to cobble-sized material 0.2-1 m wide that is pushed by runoff damming up behind it. During initiation, runoff moved individual particles that accumulated a small distance downslope until the accumulation of grains failed and formed the granular lobe of the HDF. HDF are a threshold process, and runoff rates of 0.5 L s- 1 2 L s- 1 were required for their initiation during the experiments. The conceptual model highlights HDF as a geomorphic process distinct from channel debris flows, because they occur on planar, unconfined hillslopes rather than confined channels. HDF can erode very coarse non-cohesive surface soil, which distinguishes them from rill erosion that have suspended and bedload transport. On a matrix of slope and grain size, HDF are enveloped between purely gravity-driven dry ravel, and mostly runoff driven bedload transport in rills.

Simulation of micro/nano electroporation for cell transfection

NASA Astrophysics Data System (ADS)

Zhang, Guocheng; Fan, Na; Jiang, Hai; Guo, Jian; Peng, Bei

2018-03-01

The 3D micro/nano electroporation for transfection has become a powerful biological cell research technique with the development of micro-nano manufacturing technology. The micro channels connected the cells with transfection reagents on the chip were important to the transmemnbrane potentical, which directly influences the electroporation efficiency. In this study, a two-dimensional model for electroporation of cells was designed to address the effects of channels’ sizes and number on transmembrane potential. The simulation results indicated that the transmembrane potential increased with increasing size of channels’ entrances. Moreover, compared with single channel entrance, the transmembrane potential was higher when the cells located at multiple channels entrances. These results suggest that it IS required to develop higher micro manufacturing technology to create channels as we expected size.

Higher Nucleoporin-Importinβ Affinity at the Nuclear Basket Increases Nucleocytoplasmic Import

PubMed Central

Azimi, Mohammad; Mofrad, Mohammad R. K.

2013-01-01

Several in vitro studies have shown the presence of an affinity gradient in nuclear pore complex proteins for the import receptor Importinβ, at least partially contributing to nucleocytoplasmic transport, while others have historically argued against the presence of such a gradient. Nonetheless, the existence of an affinity gradient has remained an uncharacterized contributing factor. To shed light on the affinity gradient theory and better characterize how the existence of such an affinity gradient between the nuclear pore and the import receptor may influence the nucleocytoplasmic traffic, we have developed a general-purpose agent based modeling (ABM) framework that features a new method for relating rate constants to molecular binding and unbinding probabilities, and used our ABM approach to quantify the effects of a wide range of forward and reverse nucleoporin-Importinβ affinity gradients. Our results indicate that transport through the nuclear pore complex is maximized with an effective macroscopic affinity gradient of 2000 µM, 200 µM and 10 µM in the cytoplasmic, central channel and nuclear basket respectively. The transport rate at this gradient is approximately 10% higher than the transport rate for a comparable pore lacking any affinity gradient, which has a peak transport rate when all nucleoporins have an affinity of 200 µM for Importinβ. Furthermore, this optimal ratio of affinity gradients is representative of the ratio of affinities reported for the yeast nuclear pore complex – suggesting that the affinity gradient seen in vitro is highly optimized. PMID:24282617

Plug-in nanoliter pneumatic liquid dispenser with nozzle design flexibility

PubMed Central

Choi, In Ho; Kim, Hojin; Lee, Sanghyun; Baek, Seungbum; Kim, Joonwon

2015-01-01

This paper presents a novel plug-in nanoliter liquid dispensing system with a plug-and-play interface for simple and reversible, yet robust integration of the dispenser. A plug-in type dispenser was developed to facilitate assembly and disassembly with an actuating part through efficient modularization. The entire process for assembly and operation of the plug-in dispenser is performed via the plug-and-play interface in less than a minute without loss of dispensing quality. The minimum volume of droplets pneumatically dispensed using the plug-in dispenser was 124 nl with a coefficient of variation of 1.6%. The dispensed volume increased linearly with the nozzle size. Utilizing this linear relationship, two types of multinozzle dispensers consisting of six parallel channels (emerging from an inlet) and six nozzles were developed to demonstrate a novel strategy for volume gradient dispensing at a single operating condition. The droplet volume dispensed from each nozzle also increased linearly with nozzle size, demonstrating that nozzle size is a dominant factor on dispensed volume, even for multinozzle dispensing. Therefore, the proposed plug-in dispenser enables flexible design of nozzles and reversible integration to dispense droplets with different volumes, depending on the application. Furthermore, to demonstrate the practicality of the proposed dispensing system, we developed a pencil-type dispensing system as an alternative to a conventional pipette for rapid and reliable dispensing of minute volume droplets. PMID:26594263

Plug-in nanoliter pneumatic liquid dispenser with nozzle design flexibility.

PubMed

Choi, In Ho; Kim, Hojin; Lee, Sanghyun; Baek, Seungbum; Kim, Joonwon

2015-11-01

This paper presents a novel plug-in nanoliter liquid dispensing system with a plug-and-play interface for simple and reversible, yet robust integration of the dispenser. A plug-in type dispenser was developed to facilitate assembly and disassembly with an actuating part through efficient modularization. The entire process for assembly and operation of the plug-in dispenser is performed via the plug-and-play interface in less than a minute without loss of dispensing quality. The minimum volume of droplets pneumatically dispensed using the plug-in dispenser was 124 nl with a coefficient of variation of 1.6%. The dispensed volume increased linearly with the nozzle size. Utilizing this linear relationship, two types of multinozzle dispensers consisting of six parallel channels (emerging from an inlet) and six nozzles were developed to demonstrate a novel strategy for volume gradient dispensing at a single operating condition. The droplet volume dispensed from each nozzle also increased linearly with nozzle size, demonstrating that nozzle size is a dominant factor on dispensed volume, even for multinozzle dispensing. Therefore, the proposed plug-in dispenser enables flexible design of nozzles and reversible integration to dispense droplets with different volumes, depending on the application. Furthermore, to demonstrate the practicality of the proposed dispensing system, we developed a pencil-type dispensing system as an alternative to a conventional pipette for rapid and reliable dispensing of minute volume droplets.

Channel catfish Ictalurus punctatus size and feed conversion ratio

USDA-ARS?s Scientific Manuscript database

Channel catfish, Ictalurus punctatus, of five size-classes were stocked into 20, 0.04-ha earthen ponds at a rate of 14,826 fish/ha. Mean initial weights for each size-class were 0.232, 0.458, 0.678, 0.911, and 1.10 kg/fish. Four ponds were randomly allotted to each treatment. A commercial 28% protei...

Local and long-range endogenous resting potential gradients antagonistically regulate apoptosis and proliferation in the embryonic CNS.

PubMed

Pai, Vaibhav P; Lemire, Joan M; Chen, Ying; Lin, Gufa; Levin, Michael

2015-01-01

Bioelectric signals, particularly transmembrane voltage potentials (Vmem), play an important role in large-scale patterning during embryonic development. Endogenous bioelectric gradients across tissues function as instructive factors during eye, brain, and other morphogenetic processes. An important and still poorly-understood aspect is the control of cell behaviors by the voltage states of distant cell groups. Here, experimental alteration of endogenous Vmem was induced in Xenopus laevis embryos by misexpression of well-characterized ion channel mRNAs, a strategy often used to identify functional roles of Vmem gradients during embryonic development and regeneration. Immunofluorescence analysis (for activated caspase 3 and phosphor-histone H3P) on embryonic sections was used to characterize apoptosis and proliferation. Disrupting local bioelectric signals (within the developing neural tube region) increased caspase 3 and decreased H3P in the brain, resulting in brain mispatterning. Disrupting remote (ventral, non-neural region) bioelectric signals decreased caspase 3 and highly increased H3P within the brain, with normal brain patterning. Disrupting both the local and distant bioelectric signals produced antagonistic effects on caspase 3 and H3P. Thus, two components of bioelectric signals regulate apoptosis-proliferation balance within the developing brain and spinal cord: local (developing neural tube region) and distant (ventral non-neural region). Together, the local and long-range bioelectric signals create a binary control system capable of fine-tuning apoptosis and proliferation with the brain and spinal cord to achieve correct pattern and size control. Our data suggest a roadmap for utilizing bioelectric state as a diagnostic modality and convenient intervention parameter for birth defects and degenerative disease states of the CNS.

Geomorphic Thresholds of Submarine Canyons Along the U.S. Atlantic Continental Margin

NASA Astrophysics Data System (ADS)

Brothers, D. S.; ten Brink, U. S.; Andrews, B. D.; Chaytor, J. D.

2011-12-01

Vast networks of submarine canyons and associated channels are incised into the U.S. Atlantic continental slope and rise. Submarine canyons form by differential erosion and deposition, primarily from sedimentary turbidity flows. Theoretical and laboratory studies have investigated the initiation of turbidity flows and their capacity to erode and entrain sedimentary material at distances far from the shelf edge. The results have helped understand the nature of turbidite deposits on the continental slope and rise. Nevertheless, few studies have examined the linkages between down-canyon sediment transport and the morphology of canyon/channel networks using mesoscale analyses of swath bathymetry data. We present quantitative analysis of 100-m resolution multibeam bathymetry data spanning ~616,000 km2 of the slope and rise between Georges Banks and the Blake Plateau (New England to North Carolina). Canyons are categorized as shelf-indenting or slope-confined based on spatial scale, vertical relief and connection with terrestrial river systems during sea level low stands. Shelf-indenting canyons usually represent the trunk-canyon of submerged channel networks. On the rise, shelf-indenting canyons have relatively well-developed channel-levees and sharp inner-thalwag incision suggesting much higher frequency and volume of turbidity flows. Because of the similarities between submarine canyon networks and terrestrial river systems, we apply methods originally developed to study fluvial morphology. Along-canyon profiles are extracted from the bathymetry data and the power-law relationship between thalwag gradient and drainage area is examined for more than 180 canyons along an ~1200 km stretch of the US Atlantic margin. We observe distinct thresholds in the power-law relationship between drainage area and gradient. Almost all canyons with heads on the upper slope contain at least two linear segments when plotted in log-log form. The first segment along the upper slope is flat (constant gradient, low area). The second segment dips (exponentially decreasing gradient with increasing area). We interpret the transition between the two segments to be either diffusive creep/landslide processes that evolve into turbidity flows or the boundary that separates up-canyon infilling from relic, lower-canyon incision. Furthermore, the threshold occurs at a nearly constant drainage area regardless of location and morphology of the drainage network. This suggests that time-averaged erosion rate in submarine canyons depends on frequency of turbidity flows, which in turn depends on the volume of unstable sediments deposited near canyon heads and along canyon walls. We find that the gradient-area relationship does not follow a power-law in shelf-indenting canyons, most likely due to allogenic processes of the continental shelf and linkage to terrestrial river discharge.

Unsteady separation and vortex shedding from a laminar separation bubble over a bluff body

NASA Astrophysics Data System (ADS)

Das, S. P.; Srinivasan, U.; Arakeri, J. H.

2013-07-01

Boundary layers are subject to favorable and adverse pressure gradients because of both the temporal and spatial components of the pressure gradient. The adverse pressure gradient may cause the flow to separate. In a closed loop unsteady tunnel we have studied the initiation of separation in unsteady flow past a constriction (bluff body) in a channel. We have proposed two important scalings for the time when boundary layer separates. One is based on the local pressure gradient and the other is a convective time scale based on boundary layer parameters. The flow visualization using a dye injection technique shows the flow structure past the body. Nondimensional shedding frequency (Strouhal number) is calculated based on boundary layer and momentum thicknesses. Strouhal number based on the momentum thickness shows a close agreement with that for flat plate and circular cylinder.

Rarefied gas flows through a curved channel: Application of a diffusion-type equation

NASA Astrophysics Data System (ADS)

Aoki, Kazuo; Takata, Shigeru; Tatsumi, Eri; Yoshida, Hiroaki

2010-11-01

Rarefied gas flows through a curved two-dimensional channel, caused by a pressure or a temperature gradient, are investigated numerically by using a macroscopic equation of convection-diffusion type. The equation, which was derived systematically from the Bhatnagar-Gross-Krook model of the Boltzmann equation and diffuse-reflection boundary condition in a previous paper [K. Aoki et al., "A diffusion model for rarefied flows in curved channels," Multiscale Model. Simul. 6, 1281 (2008)], is valid irrespective of the degree of gas rarefaction when the channel width is much shorter than the scale of variations of physical quantities and curvature along the channel. Attention is also paid to a variant of the Knudsen compressor that can produce a pressure raise by the effect of the change of channel curvature and periodic temperature distributions without any help of moving parts. In the process of analysis, the macroscopic equation is (partially) extended to the case of the ellipsoidal-statistical model of the Boltzmann equation.

Localization and function of ATP-sensitive potassium channels in human skeletal muscle.

PubMed

Nielsen, Jens Jung; Kristensen, Michael; Hellsten, Ylva; Bangsbo, Jens; Juel, Carsten

2003-02-01

The present study investigated the localization of ATP-sensitive K+ (KATP) channels in human skeletal muscle and the functional importance of these channels for human muscle K+ distribution at rest and during muscle activity. Membrane fractionation based on the giant vesicle technique or the sucrose-gradient technique in combination with Western blotting demonstrated that the KATP channels are mainly located in the sarcolemma. This localization was confirmed by immunohistochemical measurements. With the microdialysis technique, it was demonstrated that local application of the KATP channel inhibitor glibenclamide reduced (P < 0.05) interstitial K+ at rest from approximately 4.5 to 4.0 mM, whereas the concentration in the control leg remained constant. Glibenclamide had no effect on the interstitial K+ accumulation during knee-extensor exercise at a power output of 60 W. In contrast to in vitro conditions, the present study demonstrated that under in vivo conditions the KATP channels are active at rest and contribute to the accumulation of interstitial K+.

Towards an understanding of the structural and functional properties of MscL, a mechanosensitive channel in bacteria

NASA Technical Reports Server (NTRS)

Blount, P.; Sukharev, S. I.; Moe, P. C.; Nagle, S. K.; Kung, C.

1996-01-01

Whether it be to sense a touch, arterial pressure, or an osmotic gradient across a cell membrane, essentially all living organisms require the capability of detecting mechanical force. Electrophysiological evidence has suggested that mechanosensitive ion channels play a major role in many systems where mechanical force is detected. But, despite their biological importance, determination of the most basic structural and functional features of mechanosensitive channels has only recently become possible. A gene called mscL, which was isolated from Escherichia coli, was the first gene shown to encode a mechanosensitive channel activity. This channel directly responds to tension in the membrane; no other proteins are required. MscL appears to be a homohexamer of a 136 amino acid polypeptide that is highly alpha helical, contains two transmembrane domains, and has both the amino and carboxyl termini in the cytoplasm. The study of the MscL protein remains, to date, one of the most viable options for understanding the structural and functional characteristics of a mechanosensitive channel.

Engineering calculations for communications satellite systems planning

NASA Technical Reports Server (NTRS)

Martin, C. H.; Gonsalvez, D. J.; Levis, C. A.; Wang, C. W.

1983-01-01

Progress is reported on a computer code to improve the efficiency of spectrum and orbit utilization for the Broadcasting Satellite Service in the 12 GHz band for Region 2. It implements a constrained gradient search procedure using an exponential objective function based on aggregate signal to noise ratio and an extended line search in the gradient direction. The procedure is tested against a manually generated initial scenario and appears to work satisfactorily. In this test it was assumed that alternate channels use orthogonal polarizations at any one satellite location.

Body size and allometric shape variation in the molly Poecilia vivipara along a gradient of salinity and predation.

PubMed

Araújo, Márcio S; Perez, S Ivan; Magazoni, Maria Julia C; Petry, Ana C

2014-12-04

Phenotypic diversity among populations may result from divergent natural selection acting directly on traits or via correlated responses to changes in other traits. One of the most frequent patterns of correlated response is the proportional change in the dimensions of anatomical traits associated with changes in growth or absolute size, known as allometry. Livebearing fishes subject to predation gradients have been shown to repeatedly evolve larger caudal peduncles and smaller cranial regions under high predation regimes. Poecilia vivipara is a livebearing fish commonly found in coastal lagoons in the north of the state of Rio de Janeiro, Brazil. Similar to what is observed in other predation gradients, lagoons inhabited by P. vivipara vary in the presence of piscivorous fishes; contrary to other poeciliid systems, populations of P. vivipara vary greatly in body size, which opens the possibility of strong allometric effects on shape variation. Here we investigated body shape diversification among six populations of P. vivipara along a predation gradient and its relationship with allometric trajectories within and among populations. We found substantial body size variation and correlated shape changes among populations. Multivariate regression analysis showed that size variation among populations accounted for 66% of shape variation in females and 38% in males, suggesting that size is the most important dimension underlying shape variation among populations of P. vivipara in this system. Changes in the relative sizes of the caudal peduncle and cranial regions were only partly in line with predictions from divergent natural selection associated with predation regime. Our results suggest the possibility that adaptive shape variation among populations has been partly constrained by allometry in P. vivipara. Processes governing body size changes are therefore important in the diversification of this species. We conclude that in species characterized by substantial among-population differences in body size, ignoring allometric effects when investigating divergent natural selection's role in phenotypic diversification might not be warranted.

Gating of Connexin Channels by transjunctional-voltage: Conformations and models of open and closed states.

PubMed

Bargiello, Thaddeus A; Oh, Seunghoon; Tang, Qingxiu; Bargiello, Nicholas K; Dowd, Terry L; Kwon, Taekyung

2018-01-01

Voltage is an important physiologic regulator of channels formed by the connexin gene family. Connexins are unique among ion channels in that both plasma membrane inserted hemichannels (undocked hemichannels) and intercellular channels (aggregates of which form gap junctions) have important physiological roles. The hemichannel is the fundamental unit of gap junction voltage-gating. Each hemichannel displays two distinct voltage-gating mechanisms that are primarily sensitive to a voltage gradient formed along the length of the channel pore (the transjunctional voltage) rather than sensitivity to the absolute membrane potential (V m or V i-o ). These transjunctional voltage dependent processes have been termed V j - or fast-gating and loop- or slow-gating. Understanding the mechanism of voltage-gating, defined as the sequence of voltage-driven transitions that connect open and closed states, first and foremost requires atomic resolution models of the end states. Although ion channels formed by connexins were among the first to be characterized structurally by electron microscopy and x-ray diffraction in the early 1980's, subsequent progress has been slow. Much of the current understanding of the structure-function relations of connexin channels is based on two crystal structures of Cx26 gap junction channels. Refinement of crystal structure by all-atom molecular dynamics and incorporation of charge changing protein modifications has resulted in an atomic model of the open state that arguably corresponds to the physiologic open state. Obtaining validated atomic models of voltage-dependent closed states is more challenging, as there are currently no methods to solve protein structure while a stable voltage gradient is applied across the length of an oriented channel. It is widely believed that the best approach to solve the atomic structure of a voltage-gated closed ion channel is to apply different but complementary experimental and computational methods and to use the resulting information to derive a consensus atomic structure that is then subjected to rigorous validation. In this paper, we summarize our efforts to obtain and validate atomic models of the open and voltage-driven closed states of undocked connexin hemichannels. This article is part of a Special Issue entitled: Gap Junction Proteins edited by Jean Claude Herve. Copyright © 2017 Elsevier B.V. All rights reserved.

Stream power framework for predicting geomorphic change: The 2013 Colorado Front Range flood

NASA Astrophysics Data System (ADS)

Yochum, Steven E.; Sholtes, Joel S.; Scott, Julian A.; Bledsoe, Brian P.

2017-09-01

The Colorado Front Range flood of September 2013 induced a diverse range of geomorphic changes along numerous stream corridors, providing an opportunity to assess responses to a large flood in a semiarid landscape. We defined six classes of geomorphic change related to peak unit stream power and valley confinement for 531 stream reaches over 226 km, spanning a gradient of channel scales and slope. Geomorphic change was generally driven by erosion of channel margins in confined reaches and by a combination of deposition and erosion in unconfined reaches. The magnitude of geomorphic change typically increased with unit stream power (ω), with greater responses observed in unconfined channels. Cumulative logit modeling indicated that total stream power or unit stream power, unit stream power gradient, and valley confinement are significant predictors of geomorphic response for this flood event. Based on this dataset, thresholds for geomorphic adjustment were defined. For channel slopes < 3%, we noted a credible potential for substantial channel widening with ω > 230 W/m2 (16 lb/ft-s; at least 10% of the investigated sites experienced substantial channel widening) and a credible potential for avulsions, braiding, and loss of adjacent road embankments associated with ω > 480 W/m2 (33 lb/ft-s; at least 10% of the investigated sites experienced such geomorphic change). Infrequent to numerous eroded banks were very likely with ω > 700 W/m2 (48 lb/ft-s), with substantial channel widening or major geomorphic change shifting from credible to likely. Importantly, in reaches where there were large reductions in ω as the valley form shifted from confined to relatively unconfined, large amounts of deposition-induced, reach-scale geomorphic change occurred in some locations at relatively low ω. Additionally, alluvial channels with slopes > 3% had greater resistance to geomorphic change, likely caused by armoring by larger bed material and increased flow resistance from enhanced bedforms. Finally, we describe how these results can potentially be used by practitioners for assessing the risk of geomorphic change when evaluating current or planned conditions.

Fluvial system response to late Pleistocene-Holocene sea-level change on Santa Rosa Island, Channel Islands National Park, California

NASA Astrophysics Data System (ADS)

Schumann, R. Randall; Pigati, Jeffrey S.; McGeehin, John P.

2016-09-01

Santa Rosa Island (SRI) is one of four east-west aligned islands forming the northern Channel Islands chain, and one of the five islands in Channel Islands National Park, California, USA. The island setting provides an unparalleled environment in which to record the response of fluvial systems to major changes of sea level. Many of the larger streams on the island occupy broad valleys that have been filled with alluvium and later incised to form steep- to vertical-walled arroyos, leaving a relict floodplain as much as 12-14 m above the present channel. The period of falling sea level between the end of the last interglacial highstand at 80 ka and the last glacial lowstand at 21 ka was marked by erosion and incision in the uplands and by deposition of alluvial sediment on the exposed marine shelf. Sea level rose relatively rapidly following the last glacial lowstand of - 106 m, triggering a shift from an erosional to a depositional sedimentary regime. Accumulation of sediment occurred first through vertical and lateral accretion in broad, shallow channels on the shelf. Channel avulsion and delta sedimentation produced widespread deposition, creating lobes or wedges of sediment distributed across relatively large areas of the shelf during the latest Pleistocene. Backfilling of valleys onshore (landward of present sea level) appears to have progressed in a more orderly and predictable fashion throughout the Holocene primarily because the streams were confined to their valleys. Vertical aggradation locally reduced stream gradients, causing frequent overbank flooding and lateral channel shift by meandering and/or avulsion. Local channel gradient and morphology, short-term climate variations, and intrinsic controls also affected the timing and magnitudes of these cut, fill, and flood events, and are reflected in the thickness and spacing of the episodic alluvial sequences. Floodplain aggradation within the valleys continued until at least 500 years ago, followed by intensive arroyo cutting that abandoned the relict floodplains, forming alluvial terraces. Sedimentary evidence points to overgrazing and drought, followed by catastrophic flooding, in the mid-nineteenth century as factors that may have accelerated and dramatically enhanced arroyo formation on the island.

Response and Recovery of Streams From an Extreme Flood

NASA Astrophysics Data System (ADS)

Kantack, K. M.; Renshaw, C. E.; Magilligan, F. J.; Dethier, E.

2015-12-01

In temperate regions, channels are expected to recover from intense floods in a matter of months to years, but quantitative empirical support for this idea remains limited. Moreover, existing literature fails to address the spatial variability of the recovery process. Using an emerging technology, we investigate the immediate response to and progressive recovery of channels in the Northeastern United States from an extreme flood. We seek to determine what factors, including the nature and extent of the immediate response of the channel to the flood and post-flood availability of sediment, contribute to the spatial variability of the rate of recovery. Taking advantage of the 2011 flooding from Tropical Storm Irene, for which pre- and post-flood aerial lidar exist, along with a third set of terrestrial lidar collected in 2015, we assess channel response and recovery with multi-temporal lidar comparison. This method, with kilometers of continuous data, allows for analysis beyond traditional cross-section and reach-scale studies. Results indicate that landscape-scale factors, such as valley morphology and gradients in unit stream power, are controls on channel response to the flood, producing spatially variable impacts. Along a 16.4-km section (drainage area = 82 km2) of the Deerfield River in Vermont, over 148,000 m3 or erosion occurred during the flood. The spatial variation of impacts was correlated (R2= 0.476) with the ratio of channel width to valley width. We expect the recovery process will similarly exhibit spatial variation in rate and magnitude, possibly being governed by gradients in unit stream power and sediment availability. We test the idea that channel widening during the flood reduces post-flood unit stream power, creating a pathway for deposition and recovery to pre-flood width. Flood-widened reaches downstream of point-sources of sediment, such as landslides, will recover more quickly than those without consistent sediment supply. Results of this study will improve our ability to predict the nature and location of flood impacts and determine what factors contribute to the spatial variability of channel recovery.

Bedload Rating and Flow Competence Curves Vary With Watershed and Bed Material Parameters

NASA Astrophysics Data System (ADS)

Bunte, K.; Abt, S. R.

2003-12-01

Bedload transport rating curves and flow competence curves (largest bedload size for specified flow) are usually not known for streams unless a large number of bedload samples has been collected and analyzed. However, this information is necessary for assessing instream flow needs and stream responses to watershed effects. This study therefore analyzed whether bedload transport rating and flow competence curves were related to stream parameters. Bedload transport rating curves and flow competence curves were obtained from extensive bedload sampling in six gravel- and cobble-bed mountain streams. Samples were collected using bedload traps and a large net sampler, both of which provide steep and relatively well-defined bedload rating and flow competence curves due to a long sampling duration, a large sampler opening and a large sampler capacity. The sampled streams have snowmelt regimes, steep (1-9%) gradients, and watersheds that are mainly forested and relatively undisturbed with basin area sizes of 8 to 105 km2. The channels are slightly incised and can contain flows of more than 1.5 times bankfull with little overbank flow. Exponents of bedload rating and flow competence curves obtained from these measurements were found to systematically increase with basin area size and decrease with the degree of channel armoring. By contrast, coefficients of bedload rating and flow competence curves decreased with basin size and increased with armoring. All of these relationships were well-defined (0.86 < r2 < 0.99). Data sets from other studies in coarse-bedded streams fit the indicated trend if the sampling device used allows measuring bedload transport rates over a wide range and if bedload supply is somewhat low. The existence of a general positive trend between bedload rating curve exponents and basin area, and a negative trend between coefficients and basin area, is confirmed by a large data set of bedload rating curves obtained from Helley-Smith samples. However, in this case, the trends only become visible as basin area sizes span a wide range (1 - 10,000 km2). The well-defined relationships obtained from the bedload trap and the large net sampler suggest that exponents and coefficients of bedload transport rating curves (and flow competence curves) are predictable from an easily obtainable parameter such as basin size. However, the relationships of bedload rating curve exponents and coefficients with basin size and armoring appear to be influenced by the sampling device used and the watershed sediment production.