Conformational Changes in IpaD from Shigella flexneri Upon Binding Bile Salts Provide Insight into the Second Step of Type III Secretion†

PubMed Central

Dickenson, Nicholas E.; Zhang, Lingling; Epler, Chelsea R.; Adam, Philip R.; Picking, Wendy L.; Picking, William D.

2011-01-01

Shigella flexneri uses its type III secretion apparatus (TTSA) to inject host-altering proteins into targeted eukaryotic cells. The TTSA is composed of a basal body and an exposed needle with invasion plasmid antigen D (IpaD) forming a tip complex that controls secretion. The bile salt deoxycholate (DOC) stimulates recruitment of the translocator protein IpaB into the maturing TTSA needle tip complex. This process appears to be triggered by a direct interaction between DOC and IpaD. Fluorescence spectroscopy and NMR spectroscopy are used here to confirm the DOC-IpaD interaction and to reveal that IpaD conformational changes upon DOC binding trigger the appearance of IpaB at the needle tip. Förster resonance energy transfer between specific sites on IpaD was used here to identify changes in distances between IpaD domains as a result of DOC binding. To further explore the effects of DOC binding on IpaD structure, NMR chemical shift mapping was employed. The environments of residues within the proposed DOC binding site and additional residues within the “distal” globular domain were perturbed upon DOC binding, further indicating that conformational changes occur within IpaD upon DOC binding. These events are proposed to be responsible for the recruitment of IpaB at the TTSA needle tip. Mutation analyses combined with additional spectroscopic analyses confirms that conformational changes in IpaD induced by DOC binding contribute to the recruitment of IpaB to the S. flexneri TTSA needle tip. These findings lay the foundation for determining how environmental factors promote TTSA needle tip maturation prior to host cell contact. PMID:21126091

Suppression of exciton dephasing in sidewall-functionalized carbon nanotubes embedded into metallo-dielectric antennas.

PubMed

Shayan, Kamran; He, Xiaowei; Luo, Yue; Rabut, Claire; Li, Xiangzhi; Hartmann, Nicolai F; Blackburn, Jeffrey L; Doorn, Stephen K; Htoon, Han; Strauf, Stefan

2018-06-26

Covalent functionalization of single-walled carbon nanotubes (SWCNTs) is a promising route to enhance the quantum yield of exciton emission and can lead to single-photon emission at room temperature. However, the spectral linewidth of the defect-related E11* emission remains rather broad. Here, we systematically investigate the low-temperature exciton emission of individual SWCNTs that have been dispersed with sodium-deoxycholate (DOC) and polyfluorene (PFO-BPy), are grown by laser vaporization (LV) or by CoMoCat techniques and are functionalized with oxygen as well as 3,5-dichlorobenzene groups. The E11 excitons in oxygen-functionalized SWCNTs remain rather broad with up to 10 meV linewidth while exciton emission from 3,5-dichlorobenzene functionalized SWCNTs is found to be about one order of magnitude narrower. In all cases, wrapping with PFO-BPy provides significantly better protection against pump induced dephasing compared to DOC. To further study the influence of exciton localization on pump-induced dephasing, we have embedded the functionalized SWCNTs into metallo-dielectric antenna cavities to maximize light collection. We show that 0D excitons attributed to the E11* emission of 3,5-dichlorobenzene quantum defects of LV-grown SWCNTs can display near resolution-limited linewidths down to 35 μeV. Interestingly, these 0D excitons give rise to a 3-fold suppressed pump-induced exciton dephasing compared to the E11 excitons in the same SWCNT. These findings provide a foundation to build a unified description of the emergence of novel optical behavior from the interplay of covalently introduced defects, dispersants, and exciton confinement in SWCNTs and might further lead to the realization of indistinguishable photons from carbon nanotubes.

Adaptation and Preadaptation of Salmonella enterica to Bile

PubMed Central

Hernández, Sara B.; Cota, Ignacio; Ducret, Adrien; Aussel, Laurent; Casadesús, Josep

2012-01-01

Bile possesses antibacterial activity because bile salts disrupt membranes, denature proteins, and damage DNA. This study describes mechanisms employed by the bacterium Salmonella enterica to survive bile. Sublethal concentrations of the bile salt sodium deoxycholate (DOC) adapt Salmonella to survive lethal concentrations of bile. Adaptation seems to be associated to multiple changes in gene expression, which include upregulation of the RpoS-dependent general stress response and other stress responses. The crucial role of the general stress response in adaptation to bile is supported by the observation that RpoS− mutants are bile-sensitive. While adaptation to bile involves a response by the bacterial population, individual cells can become bile-resistant without adaptation: plating of a non-adapted S. enterica culture on medium containing a lethal concentration of bile yields bile-resistant colonies at frequencies between 10−6 and 10−7 per cell and generation. Fluctuation analysis indicates that such colonies derive from bile-resistant cells present in the previous culture. A fraction of such isolates are stable, indicating that bile resistance can be acquired by mutation. Full genome sequencing of bile-resistant mutants shows that alteration of the lipopolysaccharide transport machinery is a frequent cause of mutational bile resistance. However, selection on lethal concentrations of bile also provides bile-resistant isolates that are not mutants. We propose that such isolates derive from rare cells whose physiological state permitted survival upon encountering bile. This view is supported by single cell analysis of gene expression using a microscope fluidic system: batch cultures of Salmonella contain cells that activate stress response genes in the absence of DOC. This phenomenon underscores the existence of phenotypic heterogeneity in clonal populations of bacteria and may illustrate the adaptive value of gene expression fluctuations. PMID:22275872

Proprotein Convertases in Human Breast Cancer

DTIC Science & Technology

2001-03-01

virgin mouse mammary glands (although further increase occurs during pregancy and lactation), a finding that is consistent with the fact that the MMTV-LTR...mM nude mice in response to estrogen and the NaC1, sodium deoxycholate (0-5%), SDS (0-1%), antiestrogen tamoxifen. NP40 (0-5%) and 100kIU/ml Trasylol

Microemulsions as vehicles for topical administration of voriconazole: formulation and in vitro evaluation.

PubMed

El-Hadidy, Gladious Naguib; Ibrahim, Howida Kamal; Mohamed, Magdi Ibrahim; El-Milligi, Mohamed Farid

2012-01-01

This work was undertaken to investigate microemulsion (ME) as a topical delivery system for the poorly water-soluble voriconazole. Different ME components were selected for the preparation of plain ME systems with suitable rheological properties for topical use. Two permeation enhancers were incorporated, namely sodium deoxycholate or oleic acid. Drug-loaded MEs were evaluated for their physical appearance, pH, rheological properties and in vitro permeation studies using guinea pig skin. MEs based on polyoxyethylene(10)oleyl ether (Brij 97) as the surfactant showed pseudoplastic flow with thixotropic behavior and were loaded with voriconazole. Jojoba oil-based MEs successfully prolonged voriconazole release up to 4 h. No significant changes in physical or rheological properties were recorded on storage for 12 months at ambient conditions. The presence of permeation enhancers favored transdermal rather than dermal delivery. Sodium deoxycholate was more effective than oleic acid for enhancing the voriconazole permeation. Voriconazole-loaded MEs, with and without enhancers, showed significantly better antifungal activity against Candida albicans than voriconazole supersaturated solution. In conclusion, the studied ME formulae could be promising vehicles for topical delivery of voriconazole.

[Rapid and efficient extraction of soluble proteins from gram-negative microorganisms without disruption of cell walls].

PubMed

Danilevich, V N; Petrovskaia, L E; Grishin, E V

2006-01-01

The ability of buffer solutions containing low concentrations of nonionic detergents (Triton X-100, Tween 20, Brij 58, and Lubrol PX) and the anionic detergent sodium deoxycholate, as well as mixtures of these detergents with chaeotropes (urea and guanidine hydrochloride), to extract intracellular proteins of Gram-negative microorganisms (Escherichia coli and Pseudomonas aeruginosa) was studied. It was established that the solutions containing Triton X-100 and sodium deoxycholate and the mixtures of these detergents with urea are the most effective. It was shown that the extraction of proteins from bacterial cells under the studied conditions is not accompanied by a release of DNA into solution but is associated with extraction of low-molecular RNAs. The level of protein extraction reaches 80%. No disruption of the bacterial cell wall occurs during the extraction, and proteins probably permeate through meshes of the murein network. The efficiencies of our buffer mixtures are close to or higher than that of the commercial reagent CelLytic B (Sigma, United States). The practical uses of the chaeotropic mixtures developed are discussed.

A novel concept of overcoming the skin barrier using augmented liquid nanocrystals: Box-Behnken optimization, ex vivo and in vivo evaluation.

PubMed

Said, Mayada; Elsayed, Ibrahim; Aboelwafa, Ahmed A; Elshafeey, Ahmed H

2018-06-18

Agomelatine suffers from extensive inactivation through 1 st pass effect with a limited oral bioavailability (5%). The aim of this study was to formulate and optimize liquid nanocrystals (LNC) containing agomelatine to enhance the transdermal permeation of the drug. The independent factors of the employed Box-Behnken design were the Pluronic F127, deoxycholic acid sodium salt and propylene glycol percentages. On the other hand, particle size, polydispersity index, zeta potential, entrapment efficiency, cumulative amount permeated at certain time intervals and permeation enhancement ratio were considered as dependent responses. The optimized formulation was composed of 1.5% Pluronic F127 and 1.5% deoxycholic acid sodium salt and it was found to have significantly higher AUC 0-24h , AUC 0-∞ and elimination t 1/2 than that of the employed reference indicating the enhancement of the drug permeation. The obtained findings indicated the ability of the optimized LNC formulation to improve the drug bioavailability after its transdermal application. Copyright © 2018 Elsevier B.V. All rights reserved.

Identification of the bile salt binding site on ipad from Shigella flexneri and the influence of ligand binding on IpaD structure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barta, Michael L.; Guragain, Manita; Adam, Philip

2012-10-25

Type III secretion (TTS) is an essential virulence factor for Shigella flexneri, the causative agent of shigellosis. The Shigella TTS apparatus (TTSA) is an elegant nano-machine that is composed of a basal body, an external needle to deliver effectors into human cells, and a needle tip complex that controls secretion activation. IpaD is at the tip of the nascent TTSA needle where it controls the first step of TTS activation. The bile salt deoxycholate (DOC) binds to IpaD to induce recruitment of the translocator protein IpaB into the maturing tip complex. We recently used spectroscopic analyses to show that IpaDmore » undergoes a structural rearrangement that accompanies binding to DOC. Here, we report a crystal structure of IpaD with DOC bound and test the importance of the residues that make up the DOC binding pocket on IpaD function. IpaD binds DOC at the interface between helices {alpha}3 and {alpha}7, with concomitant movement in the orientation of helix {alpha}7 relative to its position in unbound IpaD. When the IpaD residues involved in DOC binding are mutated, some are found to lead to altered invasion and secretion phenotypes. These findings suggest that adoption of a DOC-bound structural state for IpaD primes the Shigella TTSA for contact with host cells. The data presented here and in the studies leading up to this work provide the foundation for developing a model of the first step in Shigella TTS activation.« less

Micellar Electrokinetic Chromatography of Aminoglycosides.

PubMed

Holzgrabe, Ulrike; Schmitt, Stefanie; Wienen, Frank

2016-01-01

The components of the aminoglycosides, e.g., gentamicin, sisomicin, netilmicin, kanamycin, amikacin, and tobramycin, and related impurities of these antibiotics can be separated by means of micellar electrokinetic chromatography (MEKC). Derivatization with o-phthaldialdehyde and thioglycolic acid is found to be appropriate for these antibiotics. The background electrolyte was composed of sodium tetraborate (100 mM), sodium deoxycholate (20 mM), and β-cyclodextrin (15 mM) having a pH value of 10.0. This method is valid for evaluation of gentamicin, kanamycin, and tobramycin. It has to be adopted for amikacin, paromomycin, neomycin, and netilmicin.

Integrated bicarbonate-form ion exchange treatment and regeneration for DOC removal: Model development and pilot plant study.

PubMed

Hu, Yue; Boyer, Treavor H

2017-05-15

The application of bicarbonate-form anion exchange resin and sodium bicarbonate salt for resin regeneration was investigated in this research is to reduce chloride ion release during treatment and the disposal burden of sodium chloride regeneration solution when using traditional chloride-form ion exchange (IX). The target contaminant in this research was dissolved organic carbon (DOC). The performance evaluation was conducted in a completely mixed flow reactor (CMFR) IX configuration. A process model that integrated treatment and regeneration was investigated based on the characteristics of configuration. The kinetic and equilibrium experiments were performed to obtain required parameters for the process model. The pilot plant tests were conducted to validate the model as well as provide practical understanding on operation. The DOC concentration predicted by the process model responded to the change of salt concentration in the solution, and showed a good agreement with pilot plant data with less than 10% difference in terms of percentage removal. Both model predictions and pilot plant tests showed over 60% DOC removal by bicarbonate-form resin for treatment and sodium bicarbonate for regeneration, which was comparable to chloride-form resin for treatment and sodium chloride for regeneration. Lastly, the DOC removal was improved by using higher salt concentration for regeneration. Copyright © 2017 Elsevier Ltd. All rights reserved.

Modification of Rat Lung Decellularization Protocol Based on Dynamic Conductometry of Working Solution.

PubMed

Kuevda, E V; Gubareva, E A; Gumenyuk, I S; Sotnichenko, A S; Gilevich, I V; Nakokhov, R Z; Rusinova, T V; Yudina, T G; Red'ko, A N; Alekseenko, S N

2017-03-01

We modified the protocol of obtaining of biological scaffolds of rat lungs based on dynamic recording of specific resistivity of working detergent solution (conductometry) during perfusion decellularization. Termination of sodium deoxycholate exposure after attaining ionic equilibrium plateau did not impair the quality of decellularization and preserved structural matrix components, which was confirmed by morphological analysis and quantitative assay of residual DNA.

Intrinsic nitric oxide regulates the taste response of the sugar receptor cell in the blowfly, Phormia regina.

PubMed

Murata, Yoshihiro; Mashiko, Masashi; Ozaki, Mamiko; Amakawa, Taisaku; Nakamura, Tadashi

2004-01-01

The taste organ in insects is a hair-shaped taste sensory unit having four functionally differentiated contact chemoreceptor cells. In the blowfly, Phormia regina, cGMP has been suggested to be a second messenger for the sugar receptor cell. Generally, cGMP is produced by membranous or soluble guanylyl cyclase (sGC), which can be activated by nitric oxide (NO). In the present paper, we electrophysiologically showed that an NO scavenger, 2-phenyl-4,4,5,5-tetramethylimidazoline-3-oxide-1-oxyl (PTIO), an NO donor, 1-hydroxy-2-oxo-3-(N-methyl-3-aminopropyl)-3-methyl-1-triazene (NOC 7) or an NO synthase (NOS) inhibitor, NG-nitro-L-arginine methyl ester (L-NAME) specifically affected the response in the sugar receptor cell, but not in other receptor cells. PTIO, when introduced into the receptor cells in a sensillum aided by sodium deoxycholate (DOC, pH 7.2), depressed the response of sugar receptor cells to sucrose but did not affect those of the salt or water receptor cells. NOC 7, given extracellularly, latently induced the response of sugar receptor cells; and L-NAME, when introduced into the receptor cells, depressed the response of sugar receptor cells. The results clearly suggest that NO, which may be produced by intrinsic NOS in sugar receptor cells, participates in the transduction cascade of these cells in blowfly.

Molecular weights and metabolism of rat brain proteins

PubMed Central

Vrba, R.; Cannon, Wendy

1970-01-01

1. Rats were injected with [U-14C]glucose and after various intervals extracts of whole brain proteins (and in some cases proteins from liver, blood and heart) were prepared by high-speed centrifugation of homogenates in 0.9% sodium chloride or 0.5% sodium deoxycholate. 2. The extracts were subjected to gel filtration on columns of Sephadex G-200 equilibrated with 0.9% sodium chloride or 0.5% sodium deoxycholate. 3. Extracts prepared with both solvents displayed on gel filtration a continuous range of proteins of approximate molecular weights ranging from less than 2×104 to more than 8×105. 4. The relative amount of the large proteins (mol.wt.>8×105) was conspicuously higher in brain and liver than in blood. 5. At 15min after the injection of [U-14C]glucose the smaller protein molecules (mol.wt.<2×104) were significantly radioactive, whereas no 14C could be detected in the larger (mol.wt.>2×104) protein molecules. The labelling of all protein samples was similar within 4h after injection of [U-14C]glucose. Fractionation of brain proteins into distinctly different groups by the methods used in the present work yielded protein samples with a specific radioactivity comparable with that of total brain protein. 6. No evidence could be obtained by the methods used in the present and previous work to indicate the presence of a significant amount of `metabolically inert protein' in the brain. 7. It is concluded that: (a) most or all of the brain proteins are in a dynamic state of equilibrium between continuous catabolism and anabolism; (b) the continuous conversion of glucose into protein is an important part of the maintenance of this equilibrium and of the homoeostasis of brain proteins in vivo. PMID:5435499

Suburban Soils: Are they the answer in determining factors controlling non-point-source DOC and DON in urban surface waters?

NASA Astrophysics Data System (ADS)

Aitkenhead-Peterson, J. A.

2016-12-01

Generally the quality of urban streams has been attributed to storm water runoff and sewage effluent discharge. Recent work in the upper Trinity Basin downstream from the Dallas/Fort Worth metropolis, TX concluded that sewage effluent only contributed between 1 and 35% of DOC dependent upon the population of the watershed. Change from native to urban land use increased DOC exports to between 938 - 1840 kg km-2 yr-1relative to the 517 kg km-2 yr-1 expected from native land use. Where this excess DOC might come from in an urban ecosystem was addressed in a separate study examining water extractable DOC (WEDOC) and DON (WEDON) in soils of single-family home lawns in Chicago, IL, Frederick, MD, Bryan/College Station, TX and Galveston, TX. These cities were exposed to different sources of sodium. Time of exposure to sodium was considered on the assumption that as new sub-divisions are built, new soil or turfgrass sod is introduced to the site. Exposure times were 0-5, 6-10, 11-20, 21-30 and > 30 yr. Length of exposure time of the soil to the urban environment was significant among the four cities examined for DOC (p < 0.001), DON (p < 0.001), sodium adsorption ratio (p < 0.006) but not for sodium (p = 0.08) or exchangeable sodium percent (ESP) (p = 0.09). In all cities WEDON increased with urban exposure time and in all cities except Galveston WEDOC increased with urban exposure time. Sodium, regardless of its source, explained 60% of the variance in WEDOC and 54% of the variance in WEDON across all cities (n = 136). To determine what other factors might be involved in increasing WEDOC and WEDON losses from suburban soils, backward stepwise regression models were used. Across the four cities, time of urban exposure, soil saturated hydraulic conductivity (Ksat), NO3-N, NH4-N, S, PO4-P, Na, Cu, Ca, Fe and Zn produced a significant model for WEDOC (Adjusted r2 = 0.85; p < 0.001) and Ksat, pH, NH4-N, PO4-P, S, Alkalinity and Cu produced a significant model for WEDON (adjusted r2 = 0.81; p < 0.0001). Models for estimating WEDOC and WEDON were also produced for the individual cities. While sodium may be a player in the increasing DOC and DON observed in urban surface waters, more research is needed to determine the mechanisms of WEDOC and WEDON release from urban soils.

Purification and some properties of the protein component of tissue thromboplastin from human brain.

PubMed Central

Bjorklid, E; Storm, E

1977-01-01

The protein component of tissue thromboplastib (Factor III) from human brain was purified by extraction of a microsomal fraction with sodium deoxycholate, gel filtration of the extract on Sephadex G-100 and preparative polyacrylamide-gel electrophoresis in the presence of sodium dodecyl sulphate. The product, apoprotein III, was homogeneous by anayltical polyacrylamide-gel electrophoresis, and it induced monospecific antibodies in rabbits and goat as shown by immunodiffusion and immunoelectrophoresis. Amino acid- and carbohydrate-analysis data for apoprotein III are presented. The carbohydrate moiety of the protein consists of fucose, mannose, galactose, N-acetylglucosamine and N-acetylneuraminate, amounting to a total content of 6.3g/100g. The apoprotein alone had no procoagulant activity. When Factor III was reconstituted by combining the pure apoprotein with a purified lipid fraction from the deoxycholate extract of crude Factor III, a high and optimal procoagulant activity was obtained at a phospholipid/protein ratio of 1.1g/g. Phosphatidylethanolamine alone had a weak but significant ability to restore activity, whereas phosphatidylcholine and phosphatidylserine separately had almost none. Two-component mixtures were on average more effective, and three-component mixtures far more effective, than the single phospholipids. The inclusion of a small amount of phosphatidylserine was very important for high activity. Images Fig. 2. PLATE 1 PMID:889578

Solubilization of phencyclidine receptors from rat cerebral cortex in an active ligand binding site

DOE Office of Scientific and Technical Information (OSTI.GOV)

McVittie, L.D.; Sibley, D.R.

1989-01-01

A phencyclidine (PCP) receptor binding site has been solubilized in an active ligand-binding state from rat cerebral cortical membranes with sodium deoxycholate. Optimal receptor solubilization occurs at a detergent/protein ratio of 0.5 (w/w); for 5 mg protein/ml solubilized with 0.25% sodium deoxycholate, about 60% of the protein and 25% of the receptor is solubilized. Specific binding of either (/sup 3/H)-N-(1-(2-thienyl)cyclohexyl)piperidine ((/sup 3/H)TCP) or (/sup 3/H)MK-801 is measurable by filtration through Sephadex G-50 columns or glass fiber filters; more than 60% of the binding activity is stable after 48 h at 4/degrees/C. In the presence of detergent, (/sup 3/H)TCP binding exhibitsmore » a K/sub d/ of 250 nM, a B/sub max/ of 0.56 pmol/mg protein, and a pharmacological profile consistent with that of the membrane-bound PCP receptor, although most drugs bind with affinities 2 to 8 fold lower than in membranes. Upon reduction of detergent concentration, binding parameters approximate those for the membrane-bound receptor (/sup 3/H)TCP binding: K/sub d/ = 48 nM, M/sub max/ = 1.13 pmol/mg protein.« less

Hypocholesterolemic effect of emodin by simultaneous determination of in vitro and in vivo bile salts binding.

PubMed

Wang, Jiaoying; Ji, Jun; Song, Zijing; Zhang, Wenjun; He, Xin; Li, Fei; Zhang, Chunfeng; Guo, Changrun; Wang, Chongzhi; Yuan, Chunsu

2016-04-01

Emodin is an active anthraquinone derivative from Rheum palmatum and some other Chinese herbs and it is traditionally used for treating a variety of diseases. In this study, we investigated the hypocholesterolemic effects and mechanism of emodin on hypercholesterolemia rats. In vitro, capability of emodin binding to sodium deoxycholate which is one kind of bile salts (BAs) was evaluated by detection of surplus content of sodium deoxycholate. In vivo, hypocholesterolemic effects were assessed by determining total cholesterol (TC), triglyceride (TG), low density lipoprotein cholesterol (LDL-C) and high density lipoprotein cholesterol (HDL-C) level of serum and TC, TG level of the liver. Oil red O staining was employed to determine lipid droplet of the liver. The mechanism was explored by BAs in feces, the liver and small intestine. Furthermore, cholesterol 7α-hydroxylase (CYP7A1) activity was measured to evaluate cholesterol's transforming to BAs. The results indicated that TC level of emodin group apparently decreased comparing with model group (p<0.05). Emodin could bind to BAs both in vivo (p<0.05) and in vitro. CYP7A1 activity in emodin group apparently increased comparing with model group (p<0.05). Data suggested that emodin had the potential value for treatment of hypercholesterolemia. The underlying mechanism is probably associated with binding capability to BAs and subsequent increasing expression of CYP7A1. Copyright © 2016 Elsevier B.V. All rights reserved.

On the Automatic Decellularisation of Porcine Aortae: A Repeatability Study Using a Non-Enzymatic Approach.

PubMed

O'Connor Mooney, Rory; Davis, Niall Francis; Hoey, David; Hogan, Lisa; McGloughlin, Timothy M; Walsh, Michael T

2016-01-01

To investigate the repeatability of automatic decellularisation of porcine aortae using a non-enzymatic approach, addressing current limitations associated with other automatic decellularisation processes. Individual porcine aortae (n = 3) were resected and every third segment (n = 4) was allocated to one of three different groups: a control or a manually or automatically decellularised group. Manual and automatic decellularisation was performed using Triton X-100 (2% v/v) and sodium deoxycholate. Protein preservation and the elimination of a galactosyl-α(1,3)galactose (GAL) epitope were measured using immunohistochemistry and protein binding assays. The presence of residual DNA was determined with gel electrophoresis and spectrophotometry. Scaffold integrity was characterised with scanning electron microscopy and uni-axial tensile testing. Manual and automatic results were compared to one another, to control groups and to current gold standards. The results were comparable to those of current gold standard decellularisation techniques. Successful repeatability was achieved, both manually and automatically, with little effect on mechanical characteristics. Complete acellularity was not confirmed in either decellularisation group. Protein preservation was consistent in both the manually and automatically decellularised groups and between each individual aorta. Elimination of GAL was not achieved. Repeatable automatic decellularisation of porcine aortae is feasible using a Triton X-100-sodium deoxycholate protocol. Protein preservation was satisfactory; however, gold standard thresholds for permissible residual DNA levels were not achieved. Future research will focus on addressing this issue by optimisation of the existing protocol for thick tissues. © 2016 S. Karger AG, Basel.

Deoxycholic Acid and the Marginal Mandibular Nerve: A Cadaver Study.

PubMed

Blandford, Alexander D; Ansari, Waseem; Young, Jason M; Maley, Bruce; Plesec, Thomas P; Hwang, Catherine J; Perry, Julian D

2018-06-04

One of the rare but serious complications observed with deoxycholic acid administration is damage to the marginal mandibular nerve. In this study, we evaluated if deoxycholic acid directly induces histologic damage to fresh cadaveric marginal mandibular nerve. A segment of marginal mandibular nerve was harvested from 12 hemifaces of 6 fresh cadavers. The nerve specimen was exposed to either 0.9% sterile saline for 24 h, deoxycholic acid (10 mg/ml) for 20 min, or deoxycholic acid (10 mg/ml) for 24 h. The nerve specimens were then fixed in glutaraldehyde for a minimum of 24 h. Toluidine blue stained sections were evaluated for stain intensity using light microscopy and color deconvolution image analysis. Supraplatysmal fat was harvested as a positive control and exposed to the same treatments as the marginal mandibular nerve specimens, then evaluated using transmission electron microscopy. Toluidine blue staining was less in the marginal mandibular nerve exposed to deoxycholic acid when compared to saline. The specimen exposed to deoxycholic acid for 24 h showed less toluidine blue staining than that of the nerve exposed to deoxycholic acid for 20 min. Transmission electron microscopy of submental fat exposed to deoxycholic acid revealed disruption of adipocyte cell membrane integrity and loss of cellular organelles when compared to specimens only exposed to saline. Deoxycholic acid (10 mg/ml) damages the marginal mandibular nerve myelin sheath in fresh human cadaver specimens. Direct deoxycholic acid neurotoxicity may cause marginal mandibular nerve injury clinically. This journal requires that authors assign a level of evidence to each article. For a full description of these Evidence-Based Medicine ratings, please refer to the Table of Contents or the online Instructions to Authors www.springer.com/00266 .

Supersaturation-Limited and Unlimited Phase Spaces Compete to Produce Maximal Amyloid Fibrillation near the Critical Micelle Concentration of Sodium Dodecyl Sulfate.

PubMed

So, Masatomo; Ishii, Akira; Hata, Yasuko; Yagi, Hisashi; Naiki, Hironobu; Goto, Yuji

2015-09-15

Although various natural and synthetic compounds have been shown to accelerate or inhibit the formation of amyloid fibrils, the mechanisms by which they achieve these adverse effects in a concentration-dependent manner currently remain unclear. Sodium dodecyl sulfate (SDS), one of the compounds that has adverse effects on fibrillation, is the most intensively studied. Here we examined the effects of a series of detergents including SDS on the amyloid fibrillation of β2-microglobulin at pH 7.0, a protein responsible for dialysis-related amyloidosis. In all the detergents examined (i.e., SDS, sodium decyl sulfate, sodium octyl sulfate, and sodium deoxycholate), amyloid fibrillation was accelerated and inhibited at concentrations near the critical micelle concentration (CMC) and higher than CMC, respectively. The most stable conformation changed from monomers with a β-structure to amyloid fibrils with a β-structure and then to α-helical complexes with micelles with an increase in detergent concentrations. These results suggest that competition between supersaturation-limited fibrillation and unlimited mixed micelle formation between proteins and micelles underlies the detergent concentration-dependent complexity of amyloid fibrillation.

Liposomes containing glycocholate as potential oral insulin delivery systems: preparation, in vitro characterization, and improved protection against enzymatic degradation

PubMed Central

Niu, Mengmeng; Lu, Yi; Hovgaard, Lars; Wu, Wei

2011-01-01

Background: Oral delivery of insulin is challenging and must overcome the barriers of gastric and enzymatic degradation as well as low permeation across the intestinal epithelium. The present study aimed to develop a liposomal delivery system containing glycocholate as an enzyme inhibitor and permeation enhancer for oral insulin delivery. Methods: Liposomes containing sodium glycocholate were prepared by a reversed-phase evaporation method followed by homogenization. The particle size and entrapment efficiency of recombinant human insulin (rhINS)-loaded sodium glycocholate liposomes can be easily adjusted by tuning the homogenization parameters, phospholipid:sodium glycocholate ratio, insulin:phospholipid ratio, water:ether volume ratio, interior water phase pH, and the hydration buffer pH. Results: The optimal formulation showed an insulin entrapment efficiency of 30% ± 2% and a particle size of 154 ± 18 nm. A conformational study by circular dichroism spectroscopy and a bioactivity study confirmed the preserved integrity of rhINS against preparative stress. Transmission electron micrographs revealed a nearly spherical and deformed structure with discernable lamella for sodium glycocholate liposomes. Sodium glycocholate liposomes showed better protection of insulin against enzymatic degradation by pepsin, trypsin, and α-chymotrypsin than liposomes containing the bile salt counterparts of sodium taurocholate and sodium deoxycholate. Conclusion: Sodium glycocholate liposomes showed promising in vitro characteristics and have the potential to be able to deliver insulin orally. PMID:21822379

In Vitro Binding Capacity of Bile Acids by Defatted Corn Protein Hydrolysate

PubMed Central

Kongo-Dia-Moukala, Jauricque Ursulla; Zhang, Hui; Irakoze, Pierre Claver

2011-01-01

Defatted corn protein was digested using five different proteases, Alcalase, Trypsin, Neutrase, Protamex and Flavourzyme, in order to produce bile acid binding peptides. Bile acid binding capacity was analyzed in vitro using peptides from different proteases of defatted corn hydrolysate. Some crystalline bile acids like sodium glycocholate, sodium cholate and sodium deoxycholate were individually tested using HPLC to see which enzymes can release more peptides with high bile acid binding capacity. Peptides from Flavourzyme defatted corn hydrolysate exhibited significantly (p < 0.05) stronger bile acid binding capacity than all others hydrolysates tested and all crystalline bile acids tested were highly bound by cholestyramine, a positive control well known as a cholesterol-reducing agent. The bile acid binding capacity of Flavourzyme hydrolysate was almost preserved after gastrointestinal proteases digestion. The molecular weight of Flavourzyme hydrolysate was determined and most of the peptides were found between 500–180 Da. The results showed that Flavourzyme hydrolysate may be used as a potential cholesterol-reducing agent. PMID:21541043

[Effect of absorption enhancers on nasal ginsenoside Rg1 delivery and its nasal ciliotoxicity].

PubMed

Chen, Xin-mei; Zhu, Jia-bi; Sun, Wei-dong; Zhang, Li-jian

2006-02-01

The enhancing activity and safety of several absorption enhancers were evaluated as potential nasal absorption enhancers to increase intranasal absorption of ginsenoside Rg1. Nasal circulatory perfusion test in vivo had been employed to investigate the effect of absorption enhancers for nasal mucosa absorption of ginsenoside Rgl in rats. The safety of the absorption enhancers were evaluated by testing cilia movement of the in situ toad palate model, the hemolysis of erythrocyte membrane of the rabbit, leaching of protein and LDH from the mice nasal mucosa and the effect on cilia structural and specific cellular changes of nasal mucosa. Absorption enhancers were necessary to facilitate ginsenoside Rg1 absorption by nasal mucosa. Among the absorption enhancers 1% sodium deoxycholate had great effect to facilite ginsenoside Rgl absorption by nasal mucosa; 1% dipotassium glycyrrhizinate and 1% azone had moderate effect to facilitate ginsenoside Rg1 absorption by nasal mucosa; 1% Tween-80, 2% beta-cyclodextrin, 0.5% borneol (dissolved in paraffin liquid), 0.5% chitosan, 5% hydroxypropyl-beta-cyclodextrin and 0.1% EDTA had low effect to facilitate ginsenoside Rgl absorption by nasal mucosa. 1% sodium deoxycholate, 1% azone and 1% dipotassium glycyrrhizinate had serious nasal toxicity; 1% Tween-80, 2% beta-cyclodextrin, 5% hydroxypropyl-beta-cyclodextrin had moderate nasal toxicity; 0.5% borneol (dissolved in paraffin liquid), 0.5% chitosan and 0.1% EDTA have little nasal toxicity. 0.5% borneol and 0.5% chitosan were the promising candidates having a good balance between enhancing activity and safety for nasal ginsenoside Rg1 delivery.

Characterization of pneumococcal purpura-producing principle.

PubMed

Chetty, C; Kreger, A

1980-07-01

Purpura was grossly observable in albino mice 6 to 8 h after the intraperitoneal injection of sterile, deoxyribonuclease-treated, cell-free extracts prepared by sodium deoxycholate-induced lysis, sonic disruption, Parr bomb treatment, autolysis without sodium deoxycholate, or alternate freezing and thawing of washed suspensions of Streptococcus pneumoniae type I. Cell-free extracts obtained from sonically disrupted, heat-killed cells (100 degrees C for 20 min) did not contain purpurogenic activity. The reaction was maximal at approximately 24 h postinjection, started to fade slowly after 24 to 48 h, and usually was not grossly observable by 4 to 6 days postinjection. The purpura-producing principle (PPP) in the cell-free extract was purified by sequential ammonium sulfate precipitation, protamine sulfate precipitation, Sepharose 6B gel filtration, wheat germ lectin-Sepharose 6MB affinity chromatography, ribonuclease and trypsin treatment, and a second Sepharose 6B gel filtration step. The final preparation (i) contained glucosamine (5.6%), muramic acid (8.0%), neutral carbohydrate (12.8%), phosphate (8.0%), orcinol-reactive material (6.0%), and Lowry-reactive material (1.6%), and (ii) was free of detectable amounts of deoxyribonucleic acid, capsular polysaccharide, neuraminidase, cytolysin, and hyaluronidase. The isoelectric point and molecular size of the PPP were approximately pI 3.0 and several million daltons, respectively, and the activity remained in the supernatant fluid after centrifugation for 1 day at 105,000 x g. PPP activity was destroyed by incubation with egg white lysozyme and sodium metaperiodate but was resistant to trypsin, pronase, alpha-amylase, deoxyribonuclease, ribonuclease, alkaline phosphatase, pancreatic lipase, 7% trichloroacetic acid, 6 M urea, autoclaving (121 degrees C) for 30 min, and mild acid and alkali exposure. Our observations indicate that the PPP requires intact beta-1,4-glucosidic linkages for activity and support the working hypothesis that activity is associated with pneumococcal peptidoglycan solubilized by the bacterium's autolysin.

Optimal conditions for elution of hepatitis B antigen after absorption onto colloidal silica.

PubMed Central

Pillot, J; Goueffon, S; Keros, R G

1976-01-01

Hepatitis B surface antigen (HBSAg) adsorbed from sera onto colloidal silica could be completely eluted through the use of 0.25% sodium deoxycholate in 0.01 M borax, pH 9.3, at 56 degrees C. The HBSAg recovered in the eluate represented 100% of that present in the original serum, and it was contaminated by only trace amounts of serum proteins (in decreasing amounts: beta-lipoprotein, immunoglobulin G, albumin). This preliminary step greatly facilitates purification of large amounts of HBSAg and provides small volumes of highly concentrated material for subsequent purification by density gradient centrifugation. PMID:9423

An intercomparison of three methods for the large-scale isolation of oceanic dissolved organic matter

USGS Publications Warehouse

Green, Nelson W.; Perdue, E. Michael; Aiken, George R.; Butler, Kenna D.; Chen, Hongmei; Dittmar, Thorsten; Niggemann, Jutta; Stubbins, Aron

2014-01-01

Dissolved organic matter (DOM) was isolated from large volumes of deep (674 m) and surface (21 m) ocean water via reverse osmosis/electrodialysis (RO/ED) and two solid-phase extraction (SPE) methods (XAD-8/4 and PPL) at the Natural Energy Laboratory of Hawaii Authority (NELHA). By applying the three methods to common water samples, the efficiencies of XAD, PPL and RO/ED DOM isolation were compared. XAD recovered 42% of dissolved organic carbon (DOC) from deep water (25% with XAD-8; 17% with XAD-4) and 30% from surface water (16% with XAD-8; 14% with XAD-4). PPL recovered 61 ± 3% of DOC from deep water and 61% from surface water. RO/ED recovered 82 ± 3% of DOC from deep water, 14 ± 3% of which was recovered in a sodium hydroxide rinse, and 75 ± 5% of DOC from surface water, with 12 ± 2% in the sodium hydroxide rinse. The highest recoveries of all were achieved by the sequential isolation of DOC, first with PPL and then via RO/ED. This combined technique recovered 98% of DOC from a deep water sample and 101% of DOC from a surface water sample. In total, 1.9, 10.3 and 1.6 g-C of DOC were collected via XAD, PPL and RO/ED, respectively. Rates of DOC recovery using the XAD, PPL and RO/ED methods were 10, 33 and 10 mg-C h− 1, respectively. Based upon C/N ratios, XAD isolates were heavily C-enriched compared with water column DOM, whereas RO/ED and PPL ➔ RO/ED isolate C/N values were most representative of the original DOM. All techniques are suitable for the isolation of large amounts of DOM with purities suitable for most advanced analytical techniques. Coupling PPL and RO/ED techniques may provide substantial progress in the search for a method to quantitatively isolate oceanic DOC, bringing the entirety of the DOM pool within the marine chemist's analytical window.

Sodium deoxycholate mediated enhanced solubilization and stability of hydrophobic drug Clozapine in pluronic micelles

NASA Astrophysics Data System (ADS)

Singla, Pankaj; Singh, Onkar; Chabba, Shruti; Aswal, V. K.; Mahajan, Rakesh Kumar

2018-02-01

In this report, the solubilization behaviour of a hydrophobic drug Clozapine (CLZ) in micellar suspensions of pluronics having different hydrophilic lipophilic balance (HLB) ratios viz. P84, F127 and F108 in the absence and presence of bile salt sodium deoxycholate (SDC) has been studied. UV-Vis spectroscopy has been exploited to determine the solubilization capacity of the investigated micellar systems in terms of drug loading efficiency, average number of drug molecules solubilized per micelle (ns), partition coefficient (P) and standard free energy of solubilization (Δ G°). The morphological and structural changes taking place in pluronics in different concentration regimes of SDC and with the addition of drug CLZ has been explored using dynamic light scattering (DLS) and small angle neutron scattering (SANS) measurements. The SANS results revealed that aggregation behaviour of pluronic-SDC mixed micelles gets improved in the presence of drug. The micropolarity measurements have been performed to shed light on the locus of solubilization of the drug in pure and mixed micellar systems. The compatibility between CLZ and drug carriers (pluronics and SDC) was confirmed using powder X-ray diffraction (PXRD) and Fourier transform infrared spectroscopy (FTIR) techniques. Among the investigated systems, P84-SDC mixed system was found to be highly efficient for CLZ loading. The long term stability data indicated that CLZ loaded P84-SDC mixed micellar formulation remained stable for 3 months at room temperature. Further, it was revealed that the CLZ loaded P84-SDC mixed micelles are converted into CLZ loaded pure P84 micelles at 30-fold dilutions which remain stable up to 48-fold dilutions. The results from the present studies suggest that P84-SDC mixed micelles can serve as suitable delivery vehicles for hydrophobic drug CLZ.

In Vivo Assessment of Clobetasol Propionate-Loaded Lecithin-Chitosan Nanoparticles for Skin Delivery.

PubMed

Şenyiğit, Taner; Sonvico, Fabio; Rossi, Alessandra; Tekmen, Işıl; Santi, Patrizia; Colombo, Paolo; Nicoli, Sara; Özer, Özgen

2016-12-26

The aim of this work was to assess in vivo the anti-inflammatory efficacy and tolerability of clobetasol propionate (CP) loaded lecithin/chitosan nanoparticles incorporated into chitosan gel for topical application (CP 0.005%). As a comparison, a commercial cream (CP 0.05% w / w ), and a sodium deoxycholate gel (CP 0.05% w / w ) were also evaluated. Lecithin/chitosan nanoparticles were prepared by self-assembling of the components obtained by direct injection of soybean lecithin alcoholic solution containing CP into chitosan aqueous solution. Nanoparticles obtained had a particle size around 250 nm, narrow distribution (polydispersity index below 0.2) and positive surface charge, provided by a superficial layer of the cationic polymer. The nanoparticle suspension was then loaded into a chitosan gel, to obtain a final CP concentration of 0.005%. The anti-inflammatory activity was evaluated using carrageenan-induced hind paw edema test on Wistar rats, the effect of formulations on the barrier property of the stratum corneum were determined using transepidermal water loss measurements (TEWL) and histological analysis was performed to evaluate the possible presence of morphological changes. The results obtained indicate that nanoparticle-in-gel formulation produced significantly higher edema inhibition compared to other formulations tested, although it contained ten times less CP. TEWL measurements also revealed that all formulations have no significant disturbance on the barrier function of skin. Furthermore, histological analysis of rat abdominal skin did not show morphological tissue changes nor cell infiltration signs after application of the formulations. Taken together, the present data show that the use of lecithin/chitosan nanoparticles in chitosan gel as a drug carrier significantly improves the risk-benefit ratio as compared with sodium-deoxycholate gel and commercial cream formulations of CP.

In Vivo Assessment of Clobetasol Propionate-Loaded Lecithin-Chitosan Nanoparticles for Skin Delivery

PubMed Central

Şenyiğit, Taner; Sonvico, Fabio; Rossi, Alessandra; Tekmen, Işıl; Santi, Patrizia; Colombo, Paolo; Nicoli, Sara; Özer, Özgen

2016-01-01

The aim of this work was to assess in vivo the anti-inflammatory efficacy and tolerability of clobetasol propionate (CP) loaded lecithin/chitosan nanoparticles incorporated into chitosan gel for topical application (CP 0.005%). As a comparison, a commercial cream (CP 0.05% w/w), and a sodium deoxycholate gel (CP 0.05% w/w) were also evaluated. Lecithin/chitosan nanoparticles were prepared by self-assembling of the components obtained by direct injection of soybean lecithin alcoholic solution containing CP into chitosan aqueous solution. Nanoparticles obtained had a particle size around 250 nm, narrow distribution (polydispersity index below 0.2) and positive surface charge, provided by a superficial layer of the cationic polymer. The nanoparticle suspension was then loaded into a chitosan gel, to obtain a final CP concentration of 0.005%. The anti-inflammatory activity was evaluated using carrageenan-induced hind paw edema test on Wistar rats, the effect of formulations on the barrier property of the stratum corneum were determined using transepidermal water loss measurements (TEWL) and histological analysis was performed to evaluate the possible presence of morphological changes. The results obtained indicate that nanoparticle-in-gel formulation produced significantly higher edema inhibition compared to other formulations tested, although it contained ten times less CP. TEWL measurements also revealed that all formulations have no significant disturbance on the barrier function of skin. Furthermore, histological analysis of rat abdominal skin did not show morphological tissue changes nor cell infiltration signs after application of the formulations. Taken together, the present data show that the use of lecithin/chitosan nanoparticles in chitosan gel as a drug carrier significantly improves the risk-benefit ratio as compared with sodium-deoxycholate gel and commercial cream formulations of CP. PMID:28035957

The effect of chemical agents on the turnover of the bound phosphate associated with the sodium-and-potassium ion-stimulated adenosine triphosphatase in ox brain microsomes

PubMed Central

Rodnight, R.

1970-01-01

1. The effect of chemical agents on the turnover of the Na+-dependent bound phosphate and the simultaneous Na+-dependent hydrolysis of ATP by a membrane preparation from ox brain was studied at an ATP/protein ratio of 12.5pmol/μg. 2. The agents were added immediately after phosphorylation of the preparation in a medium containing 50mm-sodium chloride and 2.5μm-[γ-32P]ATP. 3. Concentrations of sodium chloride above 150mm, calcium chloride to 20mm and suramin to 1.4mm inhibited both phosphorylation and dephosphorylation and concomitantly slowed ATP hydrolysis. At 125mm-sodium chloride dephosphorylation and hydrolysis were slightly slowed without affecting phosphorylation. 4. Ethanol to 1.6m concentration inhibited dephosphorylation without affecting phosphorylation; the bound phosphate was increased and ATP hydrolysis slowed. 5. Ouabain to 4mm concentration partially inhibited ATP hydrolysis and caused a transient (1–2s) rise in bound phosphate followed by a rapid fall to a lower plateau value, which eventually declined to zero by the time ATP hydrolysis was complete. 6. Of the detergents examined Lubrol W, Triton X-100 and sodium deoxycholate had no significant effect on turnover. Sodium dodecyl sulphate and sodium decyl sulphate to 3.5mm and 20mm respectively completely inhibited turnover and ATP hydrolysis and stabilized the bound phosphate. PMID:4250238

Oxygen consumption and labile dissolved organic carbon uptake by benthic biofilms

NASA Astrophysics Data System (ADS)

de Falco, Natalie; Boano, Fulvio; Arnon, Shai

2015-04-01

Biogeochemical activity in streams is often magnified at interfaces, such as in the case of biofilm growth near the surface of the stream sediments. The objective of this study was to evaluate the relative importance of surficial biofilms versus the biofilm in the hyporheic zone to the processes of biodegradation of a labile dissolved organic carbon (DOC) and to oxygen consumption. Experiments were conducted in a recirculating flume, equipped with a drainage system that enables the control on losing and gaining fluxes. A surficial biofilm was developed over a sandy streambed with dune-shaped bed forms, by providing labile DOC (sodium benzoate) and nitrate. Homogeneously distributed biofilm was obtained by the same feeding strategy but with mixing the sediments manually on a daily basis. After the biofilm growth period, transformation of the labile DOC under different overlying velocities and losing or gaining fluxes was studied after spiking with sodium benzoate and by monitoring the decrease in DOC concentration in the bulk water over time using an online UV/Vis spectrophotometer. In addition, oxygen profiles across the water-streambed interface were measured at different locations along the bed form using oxygen microelectrodes. Preliminary results showed that the rate of labile DOC degradation increased exponentially with increasing overlying water velocity, regardless of the type of biofilm. Gaining and losing conditions did not play a critical role in the DOC degradation regardless of the type of biofilm, because the labile DOC was quickly utilized close to the surface. Under losing conditions, complete depletion of oxygen was observed within the top 5 millimeters, regardless of the biofilm type. In contrast, oxygen profiles under gaining condition showed an incomplete consumption of oxygen followed by an increase in the concentration of oxygen deeper in the sediments due to the upward flow of oxygenated groundwater. The results suggest that the transformation of labile DOC occurs in the upper millimeters of the streambed, and the size and shape of the hyporheic flow paths are less important for aerobic activity. In addition, the effect of overlying water velocity on labile DOC transformation was shown to be more influential than losing and gaining fluxes.

A membrane basis for bacterial identification and discrimination using laser-induced breakdown spectroscopy

NASA Astrophysics Data System (ADS)

Rehse, Steven J.; Jeyasingham, Narmatha; Diedrich, Jonathan; Palchaudhuri, Sunil

2009-05-01

Nanosecond single-pulse laser-induced breakdown spectroscopy (LIBS) has been used to discriminate between two different genera of Gram-negative bacteria and between several strains of the Escherichia coli bacterium based on the relative concentration of trace inorganic elements in the bacteria. Of particular importance in all such studies to date has been the role of divalent cations, specifically Ca2+ and Mg2+, which are present in the membranes of Gram-negative bacteria and act to aggregate the highly polar lipopolysaccharide molecules. We have demonstrated that the source of emission from Ca and Mg atoms observed in LIBS plasmas from bacteria is at least partially located at the outer membrane by intentionally altering membrane biochemistry and correlating these changes with the observed changes in the LIBS spectra. The definitive assignment of some fraction of the LIBS emission to the outer membrane composition establishes a potential serological, or surface-antigen, basis for the laser-based identification. E. coli and Pseudomonas aeruginosa were cultured in three nutrient media: trypticase soy agar as a control, a MacConkey agar with a 0.01% concentration of bile salts including sodium deoxycholate, and a trypticase soy agar with a 0.4% deoxycholate concentration. The higher concentration of deoxycholate is known to disrupt bacterial outer membrane integrity and was expected to induce changes in the observed LIBS spectra. Altered LIBS emission was observed for bacteria cultured in this 0.4% medium and laser ablated in an all-argon environment. These spectra evidenced a reduced calcium emission and in the case of one species, a reduced magnesium emission. Culturing on the lower (0.01%) concentration of bile salts altered the LIBS spectra for both the P. aeruginosa and two strains of E. coli in a highly reproducible way, although not nearly as significantly as culturing in the higher concentration of deoxycholate did. This was possibly due to the accumulation of divalent cations around the bacteria by the formation of an extracellular polysaccharide capsule. Lastly, a discriminant function analysis demonstrated that in spite of alterations in the LIBS spectrum induced by growth in the three different media, the analysis could correctly identify all samples better than 90% of the time. This encouraging result illustrates the potential utility of LIBS as a rapid bacteriological identification technology.

Isolation of nonvolatile, organic solutes from natural waters by zeotrophic distillation of water from N,N-dimethylformamide

USGS Publications Warehouse

Leenheer, J.A.; Brown, P.A.; Stiles, E.A.

1987-01-01

Nonvolatile, organic solutes that comprise the dissolved organic carbon (DOC) in saline waters were isolated by removal of the water by distillation from a N,N-dimethylformamideformic acid-acetonitrile mixture. Salts isolated with the DOC were removed by crystallization of sodium chloride and sodium sulfate from the solvent mixture, removal of silicic acid by acidification and precipitation, removal of boric acid by methylation and volatilization, and removal of phosphate by zinc acetate precipitation. Chemical alteration of the organic solutes was minimized during evaporative concentration steps by careful control of acid concentrations in the solvent mixture and was minimized during drying by conversion of the samples to pyridinium and sodium salts. Recoveries of various hydrophilic organic standards from aqueous salt solutions and recoveries of natural organic solutes from various water samples varied from 60 to 100%. Losses of organic solutes during the isolation procedure were nonselective and related to the number of salt- and precipitate-washing cycles in the procedure.

Changes in primary healthcare providers’ attitudes and counseling behaviors related to dietary sodium reduction, DocStyles 2010 and 2015

PubMed Central

Cogswell, Mary E.; Fang, Jing; Coleman King, Sallyann M.; Merritt, Robert K.

2017-01-01

High blood pressure is a major risk factor for cardiovascular disease. The 2013 ACC/AHA Lifestyle Management Guideline recommends counseling pre-hypertensive and hypertensive patients to reduce sodium intake. Population sodium reduction efforts have been introduced in recent years, and dietary guidelines continued to emphasize sodium reduction in 2010 and 2015. The objective of this analysis was to determine changes in primary health care providers’ sodium-reduction attitudes and counseling between 2010 and 2015. Primary care internists, family/general practitioners, and nurse practitioners answered questions about sodium-related attitudes and counseling behaviors in DocStyles, a repeated cross-sectional web-based survey in the United States. Differences in responses between years were examined. In 2015, the majority (78%) of participants (n = 1,251) agreed that most of their patients should reduce sodium intake, and reported advising hypertensive (85%), and chronic kidney disease patients (71%), but not diabetic patients (48%) and African-American patients (43%) to consume less salt. Since 2010, the proportion of participants agreeing their patients should reduce sodium intake decreased while the proportion advising patients with these characteristics to consume less salt increased and the prevalence of specific types of advice declined. Changes in behaviors between surveys remained significant after adjusting for provider and practice characteristics. More providers are advising patients to consume less salt in 2015 compared to 2010; however, fewer agree their patients should reduce intake and counseling is not universally applied across patient groups at risk for hypertension. Further efforts and educational resources may be required to enable patient counseling about sodium reduction strategies. PMID:28531232

The food-borne pathogen Campylobacter jejuni responds to the bile salt deoxycholate with countermeasures to reactive oxygen species

DOE Office of Scientific and Technical Information (OSTI.GOV)

Negretti, Nicholas M.; Gourley, Christopher R.; Clair, Geremy

In this study, bile plays an important role in digestion, absorption of fats, and the excretion of waste products, while concurrently providing a critical barrier against colonization by harmful bacteria. Previous studies have demonstrated that gut pathogens react to bile by adapting their protein synthesis. The ability of pathogens to respond to bile is remarkably complex and still incompletely understood. Here we show that Campylobacter jejuni, a leading bacterial cause of human diarrheal illness worldwide, responds to deoxycholate, a component of bile, by altering global gene transcription in a manner consistent with a strategy to mitigate exposure to reactive oxygenmore » stress. More specifically, continuous growth of C. jejuni in deoxycholate was found to: induce the production of reactive oxygen species (ROS); decrease succinate dehydrogenase activity (complex II of the electron transport chain); increase catalase activity that is involved in H 2O 2 breakdown; and result in DNA strand breaks. Congruently, by adding 4-hydroxy-TEMPO (TEMPOL), a superoxide dismutase mimic, that reacts with superoxide to cultures under deoxycholate-mediated ROS stress, C. jejuni growth in the presence of deoxycholate was rescued. We postulate that continuous exposure of a number of enteric pathogens to deoxycholate stimulates a conserved survival response to this stressor.« less

The food-borne pathogen Campylobacter jejuni responds to the bile salt deoxycholate with countermeasures to reactive oxygen species

DOE PAGES

Negretti, Nicholas M.; Gourley, Christopher R.; Clair, Geremy; ...

2017-11-13

In this study, bile plays an important role in digestion, absorption of fats, and the excretion of waste products, while concurrently providing a critical barrier against colonization by harmful bacteria. Previous studies have demonstrated that gut pathogens react to bile by adapting their protein synthesis. The ability of pathogens to respond to bile is remarkably complex and still incompletely understood. Here we show that Campylobacter jejuni, a leading bacterial cause of human diarrheal illness worldwide, responds to deoxycholate, a component of bile, by altering global gene transcription in a manner consistent with a strategy to mitigate exposure to reactive oxygenmore » stress. More specifically, continuous growth of C. jejuni in deoxycholate was found to: induce the production of reactive oxygen species (ROS); decrease succinate dehydrogenase activity (complex II of the electron transport chain); increase catalase activity that is involved in H 2O 2 breakdown; and result in DNA strand breaks. Congruently, by adding 4-hydroxy-TEMPO (TEMPOL), a superoxide dismutase mimic, that reacts with superoxide to cultures under deoxycholate-mediated ROS stress, C. jejuni growth in the presence of deoxycholate was rescued. We postulate that continuous exposure of a number of enteric pathogens to deoxycholate stimulates a conserved survival response to this stressor.« less

Johnston Atoll virus (Quaranfil group) from Ornithodoros capensis (Ixodoidea: Argasidae) infesting a gannet colony in New Zealand.

PubMed

Austin, F J

1978-09-01

Ten strains of Johnston Atoll (JA) virus were isolated from Ornithodoros capensis collected in a Gannet (Sula bassana serrator) colony in New Zealand. Its sensitivity to ether and sodium deoxycholate were confirmed and it was shown to have an RNA genome. It multiplied in day-old chicks but, unlike the prototype virus, it was not pathogenic for them. Transmission experiments and the high incidence of birds with neutralizing antibody indicate that the virus is maintained in the colony by a cycle involving ticks and Gannets. This is the first recorded tickborne arbovirus in New Zealand and extends the known range of JA virus from the tropics into the temperate zone.

Enhanced dispersion of boron nitride nanosheets in aqueous media by using bile acid-based surfactants

NASA Astrophysics Data System (ADS)

Chae, Ari; Park, Soo-Jin; Min, Byunggak; In, Insik

2018-01-01

Facile noncovalent surface functionalization of hydroxylated boron nitride nanosheet (BNNS-OH) was attempted through the sonication-assisted exfoliation of h-BN in aqueous media in the presence of bile acid-based surfactants such as sodium cholic acid (SC) or sodium deoxycholic acid (SDC), resulting in SC- or SDC-BNNS-OH dispersion with high up to 2 mg ml-1 and enhanced dispersion stability due to the increased negative zeta potential. While prepared SC-BNNS-OH revealed multi-layered BNNS structures, the large lateral sizes of hundreds nanometers and clear h-BN lattice structures are very promising for the preparation and application of water-processable BNNS-based nanomaterials. It is regarded that noncovalent functionalization of BNNS-OH based on σ-π interaction between with σ-rich bile acid-based amphiphiles and π-rich BNNS is very effective to formulate multi-functional BNNS-based nanomaterials or hybrids that can be utilized in various applications where both the pristine properties of BNNS and the extra functions are simultaneously required.

The impact of detergents on the tissue decellularization process: a ToF-SIMS study

PubMed Central

White, Lisa J; Taylor, Adam J; Faulk, Denver M; Keane, Tim J; Saldin, Lindsey T; Reing, Janet E; Swinehart, Ilea T; Turner, Neill J; Ratner, Buddy D

2017-01-01

Biologic scaffolds are derived from mammalian tissues, which must be decellularized to remove cellular antigens that would otherwise incite an adverse immune response. Although widely used clinically, the optimum balance between cell removal and the disruption of matrix architecture and surface ligand landscape remains a considerable challenge. Here we describe the use of time of flight secondary ion mass spectroscopy (ToF-SIMS) to provide sensitive, molecular specific, localized analysis of detergent decellularized biologic scaffolds. We detected residual detergent fragments, specifically from Triton X-100, sodium deoxycholate and sodium dodecyl sulphate (SDS) in decellularized scaffolds; increased SDS concentrations from 0.1% to 1.0% increased both the intensity of SDS fragments and adverse cell outcomes. We also identified cellular remnants, by detecting phosphate and phosphocholine ions in PAA and CHAPS decellularized scaffolds. The present study demonstrates ToF-SIMS is not only a powerful tool for characterization of biologic scaffold surface molecular functionality, but also enables sensitive assessment of decellularization efficacy. PMID:27993639

Interactions of lectins with plasma membrane glycoproteins of the Ehrlich ascites carcinoma cell.

PubMed

Nachbar, M S; Oppenheim, J D; Aull, F

1976-02-06

Several aspects of the interaction of various lectins with the surface of Ehrlich ascites carcinoma cells are described. The order of agglutinating activity for various lectins is Ricinus communis greater than wheat germ greater than or equal to concanavalin A greater than or equal to soybean greater than Limulus polyphemus. No agglutination was noted for Ulex europaeus. Using 125I-labeled lectins it was determined that there are 1.6 and 7 times as many Ricinus communis lectin binding sites for concanavalin A and soybean lectins. Sodium deoxycholate-solubilized plasma membrane material was subjected to lectin affinity chromatography and sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The lectin receptors of the plasma membrane appeared to be heterogeneous and some qualitative differences could be discerned among the electrophoretically analyzed material, which bound to and was specifically eluted from the various lectin affinity columns. The characteristics of elution of bound material from individual lectin columns indicated secondary hydrophobic interactions between concanavalin A or wheat germ agglutinin and their respective lectin receptor molecules.

[Combined action of nitrofuran preparations and bile acids on staphylococci].

PubMed

Tkachuk, N I

1984-03-01

The effect of cholic, glycocholic and deoxycholic bile acids on the antimicrobial activity of furacin, furadonin, furagin and furoxone was studied with the use of collection strains and fresh isolates of staphylococci. The method of dilutions in liquid media was used. Cholic and glycocholic acids lowered the MIC of furacin, furadonin, furoxone and furagin with respect to the collection strains by 4-16, 5, 4-6 and 22-37 times, respectively. The potentiating effect of deoxycholic acid on the nitrofuran drugs was even more pronounced. Thus, when the nitrofurans were used in combination with deoxycholic acid, their MIC dropped by 16-114 times. A significant increase in the antimicrobial activity of the nitrofurans under the effect of the bile acids was also observed with respect to the fresh isolates of Staphylococcus, while it was somewhat lower. The subbacteriostatic doses of cholic, glycocholic and deoxycholic bile acids also increased the bactericidal effect of the nitrofuran drugs. The minimum bactericidal concentrations (MBC) of furacin, furoxone, furadonin and furagin decreased from 12.5, 2.08, 25.0 and 1.82 to 0.78, 0.26, 2.34 and 0.032 micrograms/ml, respectively. The most pronounced decrease in the MBC was observed under the effect of deoxycholic acid. Therefore, the bile acids potentiated the nitrofuran antistaphylococcal activity. The combinations of deoxycholic acid with furagin or furoxone were the most effective.

Simultaneous effect of dissolved organic carbon, surfactant, and organic acid on the desorption of pesticides investigated by response surface methodology.

PubMed

Trinh, Ha Thu; Duong, Hanh Thi; Ta, Thao Thi; Van Cao, Hoang; Strobel, Bjarne W; Le, Giang Truong

2017-08-01

Desorption of pesticides (fenobucarb, endosulfan, and dichlorodiphenyltrichloroethane (DDT)) from soil to aqueous solution with the simultaneous presence of dissolved organic carbon (DOC), sodium dodecyl sulfate (SDS), and sodium oxalate (Oxa) was investigated in batch test by applying a full factorial design and the Box-Behnken response surface methodology (RSM). Five concentration levels of DOC (8 to 92 mg L -1 ), SDS (0 to 6.4 critical micelle concentration (CMC)), and Oxa (0 to 0.15 M) were used for the experiments with a rice field topsoil. The results of RSM analysis and analysis of variance (ANOVA) have shown that the experimental data could be well described by quadratic regression equations with determination coefficients (R 2 ) of 0.990, 0.976, and 0.984 for desorption of fenobucarb, endosulfan, and DDT, respectively. The individual effects and interaction of DOC, SDS, and Oxa were evaluated through quadratic regression equations. When the aqueous solution includes 50 mg L -1 DOC, 3.75 CMC SDS, and 0.1 M Oxa, the maximum desorption concentrations of fenobucarb, endosulfan, and DDT were 96, 80, and 75 μg L -1 , respectively. The lowest concentration of SDS, DOC, and Oxa caused the minimum desorption. This point at conditions of concern for flooding water is high content of organic compounds causing potentially high contamination by desorption, and the remarkably lower desorption at organic matter-free conditions. The suspended organic matter is one of the common characteristics of flooding and irrigation water in rice fields, and surfactants from pollution increase the problem with desorption of legacy pesticides in the rice fields.

Effect of different bile salts on the relative hypoglycemia of witepsol W35 suppositories containing insulin in diabetic Beagle dogs.

PubMed

Hosny, E A; Al-Shora, H I; Elmazar, M M

2001-09-01

Insulin suppositories were formulated using Witepsol W35 as a base to investigate the effect of various bile salts/acids on the plasma glucose concentration of diabetic beagle dogs. Comparison of the effect of these formulations was made with that produced by insulin subcutaneous injections. Of the bile salts/acids studied, incorporation of 100 mg of deoxycholic acid (DCA), sodium cholate (NaC), or sodium deoxycholate (NaDC) with insulin (10 U/Kg) showed that suppositories containing NaDC produced the highest area under the curve (AUC) and relative hypoglycemia (RH) of 290 +/- 83 mg%h and 28% +/- 8.1%, respectively. To study the optimum amount of NaDC in insulin suppositories to produce the highest RH, 50-200 mg/suppository were used, and we found that 150 mg NaDC produced 35% +/- 13% RH. We also studied the influence of different doses of insulin (5-20 U/kg) in the presence of NaDC (100 mg). It was found that increase of the insulin dose was accompanied by an increase in AUC and maximum reduction in plasma glucose level Cmax. A combination of NaDC (100 mg) and NaC (50 mg) produced an AUC of 252 +/- 13mg%h and an RH of 49% +/- 2.6%, which were higher than produced by either of its individual components (NaC 50 mg or NaDC 100 mg) when used alone or when compared with an equivalent amount of NaDC (150 mg). When the effect of sodium taurocholate (NaTC) and sodium taurodeoxycholate (NaTDC) was studied, it was found that an insulin suppository containing 100 mg of either NaTC or NaTDC produced an RH equivalent to that produced previouslY with a mixture of NaDC (100 mg) and NaC (50 mg). On the other hand, NaC (50 mg) did not improve the hypoglycemic effect of NaTC any further. In conclusion, a relative hYpoglycemia of about 50% can be reached using insulin suppositories containing Witepsol W35 as a base and NaDC plus NaC (100 mg plus 50 mg, respectively), NaTDC (100mg), or NaTC (100 mg) as rectal absorption enhancers of insulin. A desirable hypoglycemia, expressed as Cmax, and/or AUC can be reached by adjusting the insulin dose in the formulation according to the degree of hyperglycemia.

Procyanidins can interact with Caco-2 cell membrane lipid rafts: involvement of cholesterol.

PubMed

Verstraeten, Sandra V; Jaggers, Grayson K; Fraga, Cesar G; Oteiza, Patricia I

2013-11-01

Large procyanidins (more than three subunits) are not absorbed at the gastrointestinal tract but could exert local effects through their interactions with membranes. We previously showed that hexameric procyanidins (Hex), although not entering cells, interact with membranes modulating cell signaling and fate. This paper investigated if Hex, as an example of large procyanidins, can selectively interact with lipid rafts which could in part explain its biological actions. This mechanism was studied in both synthetic membranes (liposomes) and Caco-2 cells. Hex promoted Caco-2 cell membrane rigidification and dehydration, effects that were abolished upon cholesterol depletion with methyl-β-cyclodextrin (MCD). Hex prevented lipid raft structure disruption induced by cholesterol depletion/redistribution by MCD or sodium deoxycholate. Supporting the involvement of cholesterol-Hex bonding in Hex interaction with lipid rafts, the absence of cholesterol markedly decreased the capacity of Hex to prevent deoxycholate- and Triton X-100-mediated disruption of lipid raft-like liposomes. Stressing the functional relevance of this interaction, Hex mitigated lipid raft-associated activation of the extracellular signal-regulated kinases (ERK) 1/2. Results support the capacity of a large procyanidin (Hex) to interact with membrane lipid rafts mainly through Hex-cholesterol bondings. Procyanidin-lipid raft interactions can in part explain the capacity of large procyanidins to modulate cell physiology. © 2013 Elsevier B.V. All rights reserved.

A new application of a sodium deoxycholate-propidium monoazide-quantitative PCR assay for rapid and sensitive detection of viable Cronobacter sakazakii in powdered infant formula.

PubMed

Zhou, Baoqing; Chen, Bolu; Wu, Xin; Li, Fan; Yu, Pei; Aguilar, Zoraida P; Wei, Hua; Xu, Hengyi

2016-12-01

A rapid, reliable, and sensitive method for the detection of Cronobacter sakazakii, a common foodborne pathogen that may cause serious neonatal disease, has been developed. In this study, a rapid real-time quantitative PCR (qPCR) assay combined with sodium deoxycholate (SD) and propidium monoazide (PMA) was developed to detect C. sakazakii contamination in powdered infant formula (PIF). This method could eliminate the interference from dead or injured bacteria. Optimization studies indicated that SD and PMA at 0.08% (wt/vol) and 5µg/mL, respectively, were the most appropriate. In addition, qPCR, PMA-qPCR, SD-PMA-qPCR, and plate count assays were used to account for the number of viable bacteria in cell suspensions that were exposed to a 55°C water bath at different length of time. As a result, the viable number by PMA-qPCR showed significantly higher than of the number from SD-PMA-qPCR or plate counts. The number of viable bacteria was consistent between SD-PMA-qPCR and traditional plate counts, which indicated that SD treatment could eliminate the interference from dead or injured cells. Using the optimized parameters, the limit of detection with the SD-PMA-qPCR assay was 3.3×10 2 cfu/mL and 4.4×10 2 cfu/g in pure culture and in spiked PIF, respectively. A similar detection limit of 5.6×10 2 cfu/g was obtained in the presence of the Staphylococcus aureus (10 7 cfu/mL). The combined SD-PMA-qPCR assay holds promise for the rapid detection of viable C. sakazakii in PIF. Copyright © 2016 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Effects of water, sodium hypochlorite, peroxyacetic acid, and acidified sodium chlorite on in-shell hazelnuts inoculated with Salmonella enterica serovar Panama.

PubMed

Weller, Lisa D; Daeschel, Mark A; Durham, Catherine A; Morrissey, Michael T

2013-12-01

Recent foodborne disease outbreaks involving minimally processed tree nuts have generated a need for improved sanitation procedures. Chemical sprays and dips have shown promise for reducing pathogens on fresh produce, but little research has been conducted for in-shell hazelnuts. This study analyzed the effectiveness of 3 chemical sanitizers for reducing Salmonella on in-shell hazelnuts. Treatments of water, sodium hypochlorite (NaOCl; 25 and 50 ppm), peroxyacetic acid (PAA; 80 and 120 ppm), and acidified sodium chlorite (ASC; 450, 830, and 1013 ppm) were sprayed onto hazelnut samples inoculated with Salmonella enterica serovar Panama. Hazelnut samples were immersed in liquid cultures of S. Panama for 24 h, air-dried, and then sprayed with water and chemical treatments. Inoculation achieved S. Panama populations of approximately 8.04 log CFU/hazelnut. Surviving S. panama populations were evaluated using a nonselective medium (tryptic soy agar), incubated 3 h, and then overlaid with selective media (xylose lysine deoxycholate agar). All of the chemical treatments significantly reduced S. Panama populations (P ≤ 0.0001). The most effective concentrations of ASC, PAA, and NaOCl treatments reduced populations by 2.65, 1.46, and 0.66 log units, respectively. ASC showed the greatest potential for use as a postharvest sanitation treatment. © 2013 Institute of Food Technologists®

Deoxycholate-Based Glycosides (DCGs) for Membrane Protein Stabilisation.

PubMed

Bae, Hyoung Eun; Gotfryd, Kamil; Thomas, Jennifer; Hussain, Hazrat; Ehsan, Muhammad; Go, Juyeon; Loland, Claus J; Byrne, Bernadette; Chae, Pil Seok

2015-07-06

Detergents are an absolute requirement for studying the structure of membrane proteins. However, many conventional detergents fail to stabilise denaturation-sensitive membrane proteins, such as eukaryotic proteins and membrane protein complexes. New amphipathic agents with enhanced efficacy in stabilising membrane proteins will be helpful in overcoming the barriers to studying membrane protein structures. We have prepared a number of deoxycholate-based amphiphiles with carbohydrate head groups, designated deoxycholate-based glycosides (DCGs). These DCGs are the hydrophilic variants of previously reported deoxycholate-based N-oxides (DCAOs). Membrane proteins in these agents, particularly the branched diglucoside-bearing amphiphiles DCG-1 and DCG-2, displayed favourable behaviour compared to previously reported parent compounds (DCAOs) and conventional detergents (LDAO and DDM). Given their excellent properties, these agents should have significant potential for membrane protein studies. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

78 FR 7400 - Initiation of Five-Year (“Sunset”) Review

Federal Register 2010, 2011, 2012, 2013, 2014

2013-02-01

... 20, 1998) and 70 FR 62061 (October 28, 2005). Guidance on methodological or analytical issues... DOC Case No. ITC Case No. Country Product contact A-570-908 731-TA-110 China Sodium Jennifer Moats...

Large-area few-layer hexagonal boron nitride prepared by quadrupole field aided exfoliation

NASA Astrophysics Data System (ADS)

Lun Lu, Han; Zhi Rong, Min; Qiu Zhang, Ming

2018-03-01

A quadrupole electric field-mediated exfoliation method is proposed to convert micron-sized hexagonal boron nitride (h-BN) powder into few-layer hexagonal boron nitride nanosheets (h-BNNS). Under optimum conditions (400 Hz, 40 V, 32 μg ml-1, sodium deoxycholate, TAE medium), the h-BN powders (thickness >200 nm, horizontal scale ˜10 μm) are successfully exfoliated into 0.5-4 nm (1-10 layers) thick h-BNNS with the same horizontal scale. Dynamic laser scattering and atomic force microscope data show that the yield is 47.6% (for the portion with the thickness of 0.5-6 nm), and all of the vertical sizes are reduced to smaller than 18 nm (45 layers).

Glycosyltransferases in the Golgi membranes of onion stem

PubMed Central

Powell, Janet T.; Brew, Keith

1974-01-01

Cell fractions consisting largely of Golgi membranes were prepared from the meristematic region of the onion. Several enzyme activities were found to be localized in these fractions: inosine diphosphatase, galactosyltransferases and glucosyltransferases. The fractions catalysed the transfer of [14C]galactose from UDP-galactose to endogenous and cell-sap acceptors, to N-acetylglucosamine and to ovalbumin. In the presence of bovine α-lactalbumin, transfer to glucose (lactose synthesis) was catalysed. [14C]Glucose was transferred from UDP-glucose to endogenous and cell-sap acceptors, to cellobiose and to fructose (sucrose synthesis). All these activities were latent, being potentiated by detergents (Triton X-100 or sodium deoxycholate). The characteristics of some of these enzyme activities are described and their biological significance is discussed. ImagesPLATE 1 PMID:4374190

Colonization, resistance to bile, and virulence properties of Escherichia coli strains: Unusual characteristics associated with biliary tract diseases.

PubMed

Razaghi, Maryam; Tajeddin, Elahe; Ganji, Leila; Alebouyeh, Masoud; Alizadeh, Amir Houshang Mohammad; Sadeghi, Amir; Zali, Mohammad Reza

2017-10-01

Escherichia coli is the species that is most frequently isolated from bile of patients with biliary tract diseases. This study was aimed to investigate any association between resistance and virulence properties of these isolates with occurrence of the diseases. A total of 102 bile samples were obtained from patients subjected to endoscopic retrograde cholangiopancreatography for different biliary diseases. Clinical data were collected and culture of the bile samples was done on selective media. Resistance of characterized Escherichia coli isolates to deoxycholate sodium (0-7%) and nineteen antibiotics was determined and PCR using 16 pairs of primers targeting stx1, stx2, exhA, eae, bfp, agg, pcvd432, lt, st, ipaH, pic, pet, ast, set, sen, and cdtB genes was done. Our results showed a statistically significant association between E. coli colonization and existence of common bile duct and gallbladder stones (p value 0.028). Out of the 22 E. coli strains (22/102) multidrug resistance phenotype was present in 95.45%. None of the strains belonged to common E. coli pathotypes. However, bfp + EhxA-hly, bfp + astA, bfp + EhxA-hly + pic, and EhxA-hly + pic + astA, bfp, and astA genotypes were detected in these strains. bfp (7/22, 31.8%) and astA (5/22, 22.7%) were among most frequent virulence factors in these strains. Results of this study showed significant association between colonization of E. coli and choledocholithiasis. Unusual existence of virulence gene combinations in these strains and their resistance to DOC and multiple classes of antibiotics could be considered as possible causes of their persistence in this harsh microenvironment. Copyright © 2017 Elsevier Ltd. All rights reserved.

Ion-pair partition of quarternary ammonium drugs: the influence of counter ions of different lipophilicity, size, and flexibility.

PubMed

Takács-Novák, K; Szász, G

1999-10-01

The ion-pair partition of quaternary ammonium (QA) pharmacons with organic counter ions of different lipophilicity, size, shape and flexibility was studied to elucidate relationships between ion-pair formation and chemical structure. The apparent partition coefficient (P') of 4 QAs was measured in octanol/pH 7.4 phosphate buffer system by the shake-flask method as a function of molar excess of ten counter ions (Y), namely: mesylate (MES), acetate (AC), pyruvate (PYRU), nicotinate (NIC), hydrogenfumarate (HFUM), hydrogenmaleate (HMAL), p-toluenesulfonate (PTS), caproate (CPR), deoxycholate (DOC) and prostaglandin E1 anion (PGE1). Based on 118 of highly precise logP' values (SD< 0.05), the intrinsic lipophilicity (without external counter ions) and the ion-pair partition of QAs (with different counter ions) were characterized. Linear correlation was found between the logP' of ion-pairs and the size of the counter ions described by the solvent accessible surface area (SASA). The lipophilicity increasing effect of the counter ions were quantified and the following order was established: DOC approximate to PGE1 > CPR approximate to PTS > NIC approximate to HMAL > PYRU approximate to AC approximate to MES approximate to HFUM. Analyzing the lipophilicity/molar ratio (QA:Y) profile, the differences in the ion-pair formation were shown and attributed to the differences in the flexibility/rigidity and size both of QA and Y. Since the largest (in average, 300 X) lipophilicity enhancement was found by the influence of DOC and PGE1 and considerable (on average 40 X) increase was observed by CPR and PTS, it was concluded that bile acids and prostaglandin anions may play a significant role in the ion-pair transport of quaternary ammonium drugs and caproic acid and p-toluenesulfonic acid may be useful salt forming agents to improve the pharmacokinetics of hydrophilic drugs.

Bicarbonate secretion and chloride absorption by rabbit cortical collecting ducts. Role of chloride/bicarbonate exchange.

PubMed Central

Star, R A; Burg, M B; Knepper, M A

1985-01-01

Cortical collecting ducts (CCD) from rabbits treated with deoxycorticosterone (DOC) actively secrete bicarbonate at high rates. To investigate the mechanism of bicarbonate secretion, we measured bicarbonate and chloride transport in CCD from rabbits treated with DOC for 9-24 d. Removal of chloride (replaced with gluconate) from both perfusate and bath inhibited bicarbonate secretion without changing transepithelial voltage. Removal of chloride only from the bath increased bicarbonate secretion, while removal of chloride only from the perfusate inhibited secretion. In contrast to the effect of removing chloride, removal of sodium from both the perfusate and bath (replacement with N-methyl-D-glucamine) did not change the rate of bicarbonate secretion. The rate of bicarbonate secretion equaled the rate of chloride absorption in tubules bathed with 0.1 mM ouabain to inhibit any cation-dependent chloride transport. Under these conditions, chloride absorption occurred against an electrochemical gradient. Removal of bicarbonate from both the perfusate and bath inhibited chloride absorption. Removal of bicarbonate only from the bath inhibited chloride absorption, while removal of bicarbonate from the lumen stimulated chloride absorption. We conclude that CCD from DOC-treated rabbits actively secrete bicarbonate and actively absorb chloride by an electroneutral mechanism involving 1:1 chloride/bicarbonate exchange. The process is independent of sodium. PMID:3930570

[The use of deoxycholic acid (ATX-101) in aesthetic medicine: A promising treatment].

PubMed

Hersant, B; Calmon, A; Meningaud, J P

2015-12-01

ATX-101 is a synthetic derivative from deoxycholic acid, which leads to destruction of adipocytes and to a skin retraction. The US Food and Drug Administration (FDA) has authorized ATX-101 injections for reduction of moderate to severe submental fat. The purpose of this note is to review the data of literature regarding the deoxycholic acid (ATX-101) where a significant difference for the submental fat between the treated group and the placebo group according to clinical and morphological criteria was observed (Refine Study 1 and 2). Side effects of this molecule seems to be limited. Copyright © 2015 Elsevier Masson SAS. All rights reserved.

Affinity Chromatography in Nonionic Detergent Solutions

NASA Astrophysics Data System (ADS)

Robinson, Jack B.; Strottmann, James M.; Wick, Donald G.; Stellwagen, Earle

1980-10-01

Anionic dye affinity chromatography is commonly unproductive in the presence of nonionic detergents used to extract particulate proteins. Using lactate dehydrogenase as a model protein, Cibacron blue F3GA as a model dye, and Triton X-100 as a model detergent, we find that the dye is encapsulated in nonionic detergent micelles, rendering the dye incapable of ligation with the enzyme. However, the dye can be liberated from the micelles without altering the nonionic detergent concentration by addition of an anionic detergent, such as deoxycholate or sodium dodecyl sulfate, forming mixed anionic/nonionic micelles that displace the anionic dye. Encapsulation of the anionic detergents prevents their activity as protein denaturants. These observations have been successfully translated to the dye affinity chromatography of a detergent extract of brain particulate cyclic nucleotide phosphodiesterase.

Large Area Few Layers Hexagonal Boron Nitride Prepared by Quadrupole Field Aided Exfoliation.

PubMed

Hanlun, Lu; Rong, Min Zhi; Zhang, Ming Qiu

2018-01-16

A quadrupole electric field mediated exfoliation method is proposed to convert micron sized hexagonal boron nitride (hBN) powders into few layers hexagonal boron nitride nano-sheets (h-BNNS). Under the optimum conditions (400 Hz, 40 V, 32μg/mL, sodium deoxycholate, TAE medium), the hBN powders (thickness > 200 nm, horizontal scale ~ 10 μm) are successfully exfoliated into 0.5-4 nm (1-10 layers) thick h-BNNS with the same horizontal scale. Dynamic laser scattering (DLS) and atomic force microscope (AFM) statistics show that the yield is 47.6 % (for the portion with the thickness of 0.5-6 nm), and all of the vertical sizes are reduced to smaller than 18 nm (45 layers). © 2018 IOP Publishing Ltd.

Polymer nanoassemblies with hydrophobic pendant groups in the core induce false positive siRNA transfection in luciferase reporter assays.

PubMed

Rheiner, Steven; Reichel, Derek; Rychahou, Piotr; Izumi, Tadahide; Yang, Hsin-Sheng; Bae, Younsoo

2017-08-07

Poly(ethylene glycol)-conjugated polyethylenimine (PEG-PEI) is a widely studied cationic polymer used to develop non-viral vectors for siRNA therapy of genetic disorders including cancer. Cell lines stably expressing luciferase reporter protein typically evaluate the transfection efficacy of siRNA/PEG-PEI complexes, however recent findings revealed that PEG-PEI can reduce luciferase expression independent of siRNA. This study elucidates a cause of the false positive effect in luciferase assays by using polymer nanoassemblies (PNAs) made from PEG, PEI, poly-(l-lysine) (PLL), palmitate (PAL), and deoxycholate (DOC): PEG-PEI (2P), PEG-PEI-PAL (3P), PEG-PLL (2P'), PEG-PLL-PAL (3P'), and PEG-PEI-DOC (2PD). In vitro transfection and western blot assays of luciferase using a colorectal cancer cell line expressing luciferase (HT29/LUC) concluded that 2P and 2P' caused no luciferase expression reduction while hydrophobically modified PNAs induced a 35-50% reduction (3P'<2PD<3P). Although cell viability remained stagnant, 3P triggered cellular stress responses including increased membrane porosity and decreased ATP and cellular protein concentrations. Raman spectroscopy suggested that hydrophobic groups influence PNA conformation changes, which may have caused over-ubiquitination and degradation of luciferase in the cells. These results indicate that hydrophobically modified PEG-PEI induces cellular distress causing over-ubiquitination of the luciferase protein, producing false positive siRNA transfection in the luciferase assay. Copyright © 2017 Elsevier B.V. All rights reserved.

Electrical Engineering (Selected Articles).

DTIC Science & Technology

1980-05-15

Homopolar Machine with Sodium-Potassium Ring-Shaped Contacts, by L.A. Sukhanov , G.A. Karmonov .......... 19 ACCESSION forWht hieSeto NTISuf ecine 1DOCS...3663 FACE 19 DIFECT-CURRENT HOMOPOLAS AACHIhI ITH SCIIUM-ECIASSIUM RING-SHAPED CONTACTS L. A. Sukhanov , Cand. tech. sciences, G. A. Karmanov, eng. ThA

Butyrate and deoxycholic acid play common and distinct roles in HCT116 human colon cell proliferation

USDA-ARS?s Scientific Manuscript database

Consumption of a high fat diet causes an increase in bile acid deoxycholic acid (DCA) in colon lumen and colon cancer risk while butyrate, an intestinal microbiota metabolite of dietary fiber, has been shown to exhibit colon cancer preventive effects. To distinguish these opposing effects of D...

Preliminary characterization of Thy-1.1 and Ag-B antigens from rat tissues solubilized in detergents

PubMed Central

Letarte-Muirhead, Michelle; Acton, Ronald T.; Williams, Alan F.

1974-01-01

1. A radioactive binding assay for Thy-1.1 alloantigen which functions in the presence of detergents was established by using glutaraldehyde-fixed thymocytes as target cells. Thy-1.1 activity in detergent extracts was then assayed by measuring inhibition of the binding assay. 2. Solubilization of Thy-1.1 from whole thymocytes, and their membranes by a large number of non-ionic detergents and deoxycholate was studied. In the same extracts Ag-B(4) histocompatibility antigenic activities were measured. With the exception of Nonidet P-40, the detergents did not affect the antigenicity of Thy-1.1, but only Lubrol-PX and deoxycholate gave effective solubilization as measured by activity remaining in the supernatant after centrifugation at 200000g for 40min. With Ag-B(4) antigen, Triton X-100, Triton X-67 and Nonidet P-40 gave effective solubilization as well as Lubrol-PX and deoxycholate. Solubilization of Thy-1.1 activity from leukaemia cells and a brain homogenate was also studied, but none of the non-ionic detergents gave satisfactory results with these tissues. 3. Extracts from thymocyte membranes were further examined by gel filtration and sucrose gradient centrifugation. The Thy-1.1 activity behaved as a single component in deoxycholate with a density similar to that of a globular protein, but in Lubrol-PX the antigen was contained in a low-density complex. In Lubrol-PX extracts Ag-B(4) was also found in aggregates not observed in deoxycholate. 4. The s20,w values for Thy-1.1 and Ag-B(4) antigens in deoxycholate were 2.4 and 4.4, and v̄ values were 0.70 and 0.75 respectively. The Stokes radius observed for Thy-1.1 was 3.1nm and for Ag-B(4) 5.3nm. By using these values the molecular weights for the antigen–detergent complexes were calculated to be 28000 for Thy-1.1 and 100000 for Ag-B(4). PMID:4219284

Paclitaxel solubility in aqueous dispersions and mixed micellar solutions of lecithin.

PubMed

Sznitowska, Malgorzata; Klunder, Malgorzata; Placzek, Marcin

2008-01-01

The aim of this study was to find a biocompatible, lecithin-based carrier for paclitaxel (PTX) suitable for intravenous infusion and ensuring a soluble PTX concentration of 100 mg/100 ml or higher for at least 24 h. Aqueous dispersions of egg or soya lecithin (water-lecithin dispersions, WLD), mixed micellar (MM) solutions of egg lecithin and sodium deoxycholate, and formulations containing lecithin plus the co-surfactants and co-solvents poloxamer, polysorbate, Span, benzalkonium chloride, and macrogol were investigated. Amorphous PTX was prepared by lyophilization. PTX co-lyophilized with surfactants was also studied. Unlike crystalline PTX, the drug in an amorphous form is easily soluble in 1-5% (w/w) WLD or in MM. The highest solubility (up to 570 mg/100 ml) was achieved in 5% WLD. Dissolved PTX precipitated from all tested formulations over 24 h. Despite this, concentrations of dissolved PTX of 100 mg/100 ml or higher were observed after 24 h in 5% egg WLD, 1-5% soya WLD, and in 5% MM (lecithin : deoxycholate ratio 1 : 1 w/w). When four different batches of 5% egg WLD were prepared, containing PTX in clinically relevant concentration of 100 mg/100 ml, no precipitation of PTX was observed within 24 h and this formulation is the most promising candidate for further in vivo studies. Neither additional surfactants nor co-lyophilization increased PTX solubility in the lecithin-based carriers. The use of parenteral emulsions as solvents for the co-lyophilized PTX also failed to increase the solubility of the drug up to the target concentration.

Butyrate and deoxycholic acid play common and distinct roles in HCT116 human colon cell proliferation

USDA-ARS?s Scientific Manuscript database

Consumption of a high fat diet causes an increase in bile acid deoxycholic acid (DCA) in colon lumen and colon cancer risk while butyrate, an intestinal microbiota metabolite of dietary fiber, has been shown to exhibit colon cancer preventive effects. To distinguish these opposing effects of DCA and...

Enantiomers of Single-Wall Carbon Nanotubes Show Distinct Coating Displacement Kinetics.

PubMed

Zheng, Yu; Bachilo, Sergei M; Weisman, R Bruce

2018-06-27

It is known that specific oligomers of single-stranded DNA (ssDNA) can show remarkable selectivity when coating different structural species of single-wall carbon nanotubes (SWCNTs). We report that (ATT) 4 ssDNA coatings strongly distinguish between the two optical isomers of (7,5) SWCNTs. This causes resolvable shifts in their fluorescence spectra and differences of 2 orders of magnitude in the room temperature rates of coating displacement, as monitored through changes in nanotube fluorescence wavelength and intensity on exposure to sodium deoxycholate. During coating displacement, the enantiomer with high affinity for the ssDNA oligomer is deduced to form an intermediate hybrid that is not observed for the low affinity enantiomer. These results reveal that enantiomeric differences in SWCNTs complexed with ssDNA are more diverse and dramatic than previously recognized.

Treatment of Lipoma by Injection Lipolysis

PubMed Central

Nanda, Soni

2011-01-01

Injection lipolysis or lipodissolve is the practice of injecting phosphatidyl choline/ sodium deoxycholate (PDC/DC) compounds in the subcutaneous fat. Though this practice is being used extensively for nonsurgical contouring of body and dissolving localized collections of excess fat, it's use as a treatment modality for lipomas needs further evaluation. We present a case where this technique was used for treating a lipoma, with no recurrence after 9 months of follow up. Injection lipolysis as a treatment modality for lipomas needs to be evaluated for safety and efficacy in trials on larger population. This could prove to be a very valuable adjunct to the current practice of excision, if done by a trained person in a properly selected patient. Also the side effects and the controversies regarding this procedure have been discussed in detail in the present paper. PMID:21976907

Characteristics of lipid substances activating the ileal brake in the rat.

PubMed Central

Brown, N J; Read, N W; Richardson, A; Rumsey, R D; Bogentoft, C

1990-01-01

Studies were carried out in 36 adult male rats to determine the characteristics of lipid substances which, after infusion into the ileum, slow the stomach to caecum transit time of the head of a bean meal in the rat. Stomach to caecum transit time was measured by environmental hydrogen analysis. Ileal infusion of a range of free fatty acids including petroselinic, oleic, myristoleic, erucic, linoleic, and linolenic all significantly slowed stomach to caecum transit time, as did the detergents (sodium bis (2-ethyl hexyl) sulphosuccinate and sodium linoleyl sulphate), the triglyceride corn oil, and the phospholipid lecithin. Although the lipid soluble deconjugated bile acid deoxycholic acid slowed stomach to caecum transit time, the water soluble conjugated bile acid taurocholic acid accelerated it. Infusion of the lipid alcohol oleyl alcohol and the calcium chelating agent disodium edetate (EDTA) into the ileum did not delay the passage of the meal through the stomach and small intestine. The diversity of lipid substances activating the ileal brake suggest a nonspecific effect by lipid soluble substances that can penetrate cell membranes. The lack of effect of EDTA suggested that calcium binding was not important. PMID:2128071

Predicting drug penetration across the blood-brain barrier: comparison of micellar liquid chromatography and immobilized artificial membrane liquid chromatography.

PubMed

De Vrieze, Mike; Lynen, Frédéric; Chen, Kai; Szucs, Roman; Sandra, Pat

2013-07-01

Several in vitro methods have been tested for their ability to predict drug penetration across the blood-brain barrier (BBB) into the central nervous system (CNS). In this article, the performance of a variety of micellar liquid chromatographic (MLC) methods and immobilized artificial membrane (IAM) liquid chromatographic approaches were compared for a set of 45 solutes. MLC measurements were performed on a C18 column with sodium dodecyl sulfate (SDS), polyoxyethylene (23) lauryl ether (Brij35), or sodium deoxycholate (SDC) as surfactant in the micellar mobile phase. IAM liquid chromatography measurements were performed with Dulbecco's phosphate-buffered saline (DPBS) and methanol as organic modifier in the mobile phase. The corresponding retention and computed descriptor data for each solute were used for construction of models to predict transport across the blood-brain barrier (log BB). All data were correlated with experimental log BB values and the relative performance of the models was studied. SDS-based models proved most suitable for prediction of log BB values, followed closely by a simplified IAM method, in which it could be observed that extrapolation of retention data to 0% modifier in the mobile phase was unnecessary.

Conformation Change in a Self-recognizing Autotransporter Modulates Bacterial Cell-Cell Interaction*

PubMed Central

Girard, Victoria; Côté, Jean-Philippe; Charbonneau, Marie-Ève; Campos, Manuel; Berthiaume, Frédéric; Hancock, Mark A.; Siddiqui, Nadeem; Mourez, Michael

2010-01-01

Bacteria mostly live as multicellular communities, although they are unicellular organisms, yet the mechanisms that tie individual bacteria together are often poorly understood. The adhesin involved in diffuse adherence (AIDA-I) is an adhesin of diarrheagenic Escherichia coli strains. AIDA-I also mediates bacterial auto-aggregation and biofilm formation and thus could be important for the organization of communities of pathogens. Using purified protein and whole bacteria, we provide direct evidence that AIDA-I promotes auto-aggregation by interacting with itself. Using various biophysical and biochemical techniques, we observed a conformational change in the protein during AIDA-AIDA interactions, strengthening the notion that this is a highly specific interaction. The self-association of AIDA-I is of high affinity but can be modulated by sodium chloride. We observe that a bile salt, sodium deoxycholate, also prevents AIDA-I oligomerization and bacterial auto-aggregation. Thus, we propose that AIDA-I, and most likely other similar autotransporters such as antigen 43 (Ag43) and TibA, organize bacterial communities of pathogens through a self-recognition mechanism that is sensitive to the environment. This could permit bacteria to switch between multicellular and unicellular lifestyles to complete their infection. PMID:20123991

Role of adsorbed surfactant in the reaction of aryl diazonium salts with single-walled carbon nanotubes.

PubMed

Hilmer, Andrew J; McNicholas, Thomas P; Lin, Shangchao; Zhang, Jingqing; Wang, Qing Hua; Mendenhall, Jonathan D; Song, Changsik; Heller, Daniel A; Barone, Paul W; Blankschtein, Daniel; Strano, Michael S

2012-01-17

Because covalent chemistry can diminish the optical and electronic properties of single-walled carbon nanotubes (SWCNTs), there is significant interest in developing methods of controllably functionalizing the nanotube sidewall. To date, most attempts at obtaining such control have focused on reaction stoichiometry or strength of oxidative treatment. Here, we examine the role of surfactants in the chemical modification of single-walled carbon nanotubes with aryl diazonium salts. The adsorbed surfactant layer is shown to affect the diazonium derivatization of carbon nanotubes in several ways, including electrostatic attraction or repulsion, steric exclusion, and direct chemical modification of the diazonium reactant. Electrostatic effects are most pronounced in the cases of anionic sodium dodecyl sulfate and cationic cetyltrimethylammonium bromide, where differences in surfactant charge can significantly affect the ability of the diazonium ion to access the SWCNT surface. For bile salt surfactants, with the exception of sodium cholate, we find that the surfactant wraps tightly enough such that exclusion effects are dominant. Here, sodium taurocholate exhibits almost no reactivity under the explored reaction conditions, while for sodium deoxycholate and sodium taurodeoxycholate, we show that the greatest extent of reaction is observed among a small population of nanotube species, with diameters between 0.88 and 0.92 nm. The anomalous reaction of nanotubes in this diameter range seems to imply that the surfactant is less effective at coating these species, resulting in a reduced surface coverage on the nanotube. Contrary to the other bile salts studied, sodium cholate enables high selectivity toward metallic species and small band gap semiconductors, which is attributed to surfactant-diazonium coupling to form highly reactive diazoesters. Further, it is found that the rigidity of anionic surfactants can significantly influence the ability of the surfactant layer to stabilize the diazonium ion near the nanotube surface. Such Coulombic and surfactant packing effects offer promise toward employing surfactants to controllably functionalize carbon nanotubes. © 2011 American Chemical Society

[Effects of simulated nitrogen deposition on organic matter leaching in forest soil].

PubMed

Duan, Lei; ma, Xiao-Xiao; Yu, De-Xiang; Tan, Bing-Quan

2013-06-01

The impact of nitrogen deposition on the dynamics of carbon pool in forest soil was studied through a field experiment at Tieshanping, Chongqing in Southwest China. The changes of dissolved organic matter (DOM) concentration in soil water in different soil layers were monitored for five years after addition of ammonium nitrate (NH4NO3) or sodium nitrate (NaNO3) at the same dose as the current nitrogen deposition to the forest floor. The results indicated that the concentration and flux of dissolved organic carbon (DOC) were increased in the first two years and then decreased by fertilizing. Fertilizing also reduced the DOC/DON (dissolved organic nitrogen) ratio of soil water in the litter layer and the DOC concentration of soil water in the upper mineral layer, but had no significant effect on DOC flux in the lower soil layer. Although there was generally no effect of increasing nitrogen deposition on the forest carbon pool during the experimental period, the shift from C-rich to N-rich DOM might occur. In addition, the species of nitrogen deposition, i. e., NH4(+) and NO3(-), did not show difference in their effect on soil DOM with the same equivalence.

Staurosporine synergistically potentiates the deoxycholate-mediated induction of COX-2 expression.

PubMed

Saeki, Tohru; Inui, Haruka; Fujioka, Saya; Fukuda, Suguru; Nomura, Ayumi; Nakamura, Yasushi; Park, Eun Young; Sato, Kenji; Kanamoto, Ryuhei

2014-08-01

Colorectal cancer is a major cause of cancer-related death in western countries, and thus there is an urgent need to elucidate the mechanism of colorectal tumorigenesis. A diet that is rich in fat increases the risk of colorectal tumorigenesis. Bile acids, which are secreted in response to the ingestion of fat, have been shown to increase the risk of colorectal tumors. The expression of cyclooxygenase (COX)-2, an inducible isozyme of cyclooxygenase, is induced by bile acids and correlates with the incidence and progression of cancers. In this study, we investigated the signal transduction pathways involved in the bile-acid-mediated induction of COX-2 expression. We found that staurosporine (sts), a potent protein kinase C (PKC) inhibitor, synergistically potentiated the deoxycholate-mediated induction of COX-2 expression. Sts did not increase the stabilization of COX-2 mRNA. The sts- and deoxycholate-mediated synergistic induction of COX-2 expression was suppressed by a membrane-permeable Ca(2+) chelator, a phosphoinositide 3-kinase inhibitor, a nuclear factor-κB pathway inhibitor, and inhibitors of canonical and stress-inducible mitogen-activated protein kinase pathways. Inhibition was also observed using PKC inhibitors, suggesting the involvement of certain PKC isozymes (η, θ, ι, ζ, or μ). Our results indicate that sts exerts its potentiating effects via the phosphorylation of p38. However, the effects of anisomycin did not mimic those of sts, indicating that although p38 activation is required, it does not enhance deoxycholate-induced COX-2 expression. We conclude that staurosporine synergistically enhances deoxycholate-induced COX-2 expression in RCM-1 colon cancer cells. © 2014 The Authors. Physiological Reports published by Wiley Periodicals, Inc. on behalf of the American Physiological Society and The Physiological Society.

Análisis de Costo Efectividad de Estrategias de Tratamiento Antimicótico en Pacientes con Neutropenia Febril Persistente y Tratamiento Antibiótico de Amplio Espectro.

PubMed

Gamboa Garay, Oscar Andrés; Fuentes Pachón, Juan Camilo; Cuervo Maldonado, Sonia Isabel; Gómez Rincón, Julio Cesar; Castillo Londoño, Juan Sebastian

2012-12-01

To assess cost-effectiveness of antifungal treatment on patients with persistent fever neutropenia: empiric antifungal therapy (EAT) vs. anticipated antifungal therapy (AAT). A decision model was performed to evaluate the cost-effectiveness of antifungal treatment strategies in patients with febrile neutropenia not responding to a broad spectrum antibiotic treatment. The strategies included were: 1) EAT with amphotericin B deoxycholate; 2) EAT with liposomal amphotericin B; 3) EAT with caspofungin; and 4) AAT with voriconazole and amphotericin B deoxycholate or liposomal amphotericin B or caspofungin in patients who initiate treatment despite having negative CT scan and galactomannan or fail to voriconazole. Effectiveness was measured as the number of deaths averted. Cost-effectiveness and incremental cost-effectiveness ratios were calculated. Deterministic and probabilistic sensitivity analyzes were performed. EAT with Amphotericin B deoxycholate was the least expensive and least effective strategy. The EAT with caspofungin was the most effective. The cost per death averted for caspofungin when compared with amphotericin B deoxycholate was $17,011,073.83, which would indicate that this strategy would be cost-effective for the country if the willingness to pay per death averted is equal to or greater than this value. EAT with liposomal amphotericin B and AAT with voriconazole were dominated by AET with caspofungin, which is less costly and more effective. EAT with caspofungin would be cost-effective for Colombia if the threshold per death averted is greater to $18.000.000. If the threshold is lesser the EAT with amphotericin B deoxycholate would be the election. Copyright © 2012 International Society for Pharmacoeconomics and Outcomes Research (ISPOR). Published by Elsevier Inc. All rights reserved.

Effects of Protein, Lipids, and Surfactants on the Antimicrobial Activity of Synthetic Steroids

PubMed Central

Smith, Rodney F.; Shay, Donald E.; Doorenbos, Norman J.

1963-01-01

Three 4-azacholestanes and two A-norcholestanes were inactivated by 10 and 20% bovine serum and by 1.0, 2.5, and 5.0% sheep blood. The five compounds exhibited hemolytic properties when tested with 2% sheep blood and 2% human blood. These cholestanes inhibited Streptococcus pyogenes and were completely inactivated by 0.1% lecithin. Tween 80 was comparable to lecithin in causing the inactivation of steroids; 1% polyethylene glycol-4000 was inert; 1% Tween 20 and 1.0% Span 20 caused the inactivation of 3β,4-dimethyl-4-aza-5α-cholestane (ND-307). The sodium salts of four fatty acids, oleate, stearate, deoxycholate, and lauryl sulfate (0.1 to 1.0 mg/ml), effectively interfered with the action of ND-307. The steroids appear to have some properties similar to those of antimicrobial surfactants of the cationic type but have certain distinct features. PMID:14075055

Isolation and purification of a granulosis virus from infected larvae of the Indian meal moth, Plodia interpunctella.

PubMed

Tweeten, K A; Bulla, L A; Consigli, R A

1977-09-01

A procedure was developed for purification of a granulosis virus inclusion body produced in vivo in the Indian meal moth, Plodia interpunctella (Hübner). Purification was accomplished by differential centrifugation, treatment with sodium deoxycholate, and velocity sedimentation in sucrose gradients. The adequacy of the procedure was confirmed by mixing experiments in which uninfected, radioactively labeled larvae were mixed with infected, unlabeled larvae. After purification, the virus was shown to be free of host tissue, to retain its physical integrity, and to be highly infectious per os. Preparations of purified virus consisted of homogeneous populations of intact inclusion bodies (210 by 380 nm) whose buoyant density was 1.271 g/cm3 when centrifuged to equilibrium in sucrose gradients. Electron microscopy of thin-sectioned virus or of virus sequentially disrupted on electron microscope grids demonstrated three components: protein matrix, envelope, and nucleocapsid.

Isolation and purification of a granulosis virus from infected larvae of the Indian meal moth, Plodia interpunctella.

PubMed Central

Tweeten, K A; Bulla, L A; Consigli, R A

1977-01-01

A procedure was developed for purification of a granulosis virus inclusion body produced in vivo in the Indian meal moth, Plodia interpunctella (Hübner). Purification was accomplished by differential centrifugation, treatment with sodium deoxycholate, and velocity sedimentation in sucrose gradients. The adequacy of the procedure was confirmed by mixing experiments in which uninfected, radioactively labeled larvae were mixed with infected, unlabeled larvae. After purification, the virus was shown to be free of host tissue, to retain its physical integrity, and to be highly infectious per os. Preparations of purified virus consisted of homogeneous populations of intact inclusion bodies (210 by 380 nm) whose buoyant density was 1.271 g/cm3 when centrifuged to equilibrium in sucrose gradients. Electron microscopy of thin-sectioned virus or of virus sequentially disrupted on electron microscope grids demonstrated three components: protein matrix, envelope, and nucleocapsid. Images PMID:334076

Transbuccal delivery of betahistine dihydrochloride from mucoadhesive tablets with a unidirectional drug flow: in vitro, ex vivo and in vivo evaluation

PubMed Central

El-Nabarawi, Mohamed A; Ali, Adel A; Aboud, Heba M; Hassan, Amira H; Godah, Amany H

2016-01-01

Objective Betahistine dihydrochloride (BH.2HCl), an anti-vertigo histamine analog used in the treatment of Ménière’s disease, undergoes extensive first-pass metabolism and suffers from short biological half-life. The aim of the present work was to develop and estimate controlled release mucoadhesive buccal tablets of BH.2HCl with a unidirectional drug flow to overcome this encumbrance. Methods A direct compression method was adopted for preparation of the tablets using mucoadhesive polymers like guar gum, hydroxypropyl methyl cellulose K4M, sodium carboxymethyl cellulose and their combinations. The tablets were coated from all surfaces except one surface with a solution of 5% (w/v) cellulose acetate and 1% (w/v) dibutyl phthalate. Different permeation enhancers like 2% sodium deoxycholate, 2% sodium cholate hydrate (SCH) and 5% menthol were tested. Swelling index, ex vivo residence time, mucoadhesion strength, in vivo testing of mucoadhesion time, in vitro dissolution and ex vivo permeation were carried out. Furthermore, compatibility and accelerated stability studies were performed for the drug excipients. Finally, drug bioavailability of the BH.2HCl-optimized buccal mucoadhesive formulation was compared with that of the orally administered Betaserc® 24 mg tablet in six healthy male volunteers. Results Formulation F10, which contained a combination of 35% guar gum and 5% sodium carboxymethyl cellulose, exhibited long adhesion time, high adhesion strength and diminished irritation to volunteers and showed zero-order release kinetics. SCH produced a significant enhancement in permeation of BH.2HCl across buccal mucosa. BH.2HCl-optimized buccal mucoadhesive formulation showed percentage relative bioavailability of 177%. Conclusion The developed mucoadhesive tablets represent a promising alternative for the buccal delivery of BH.2HCl. PMID:28008227

Modulation of the aggregation properties of sodium deoxycholate in presence of hydrophilic imidazolium based ionic liquid: water dynamics study to probe the structural alteration of the aggregates.

PubMed

Kundu, Niloy; Banik, Debasis; Roy, Arpita; Kuchlyan, Jagannath; Sarkar, Nilmoni

2015-10-14

In this article, we have investigated the effect of a hydrophilic ionic liquid, 1-butyl-3-methylimidazolium tetrafluoroborate ([bmim]-BF4), on the aggregation properties of a biological surfactant, sodium deoxycholate (NaDC), in water. In solution, unlike conventional surfactants it shows stepwise aggregation and the effect of the conventional ionic liquid on the aggregation properties is rather interesting. We have observed concentration dependent dual role of the ionic liquid; at their low concentration, the aggregated structure of NaDC reorganizes itself into an elongated rod like structure. However, the aggregated network is disintegrated into small aggregates upon further addition of ionic liquid. TEM (Transmission Electron Microscopy), SEM (Scanning Electron Microscopy) and FLIM (Fluorescence Lifetime Imaging Microscopy) images also confirmed the structural alteration of NaDC upon varying the concentration of the ionic liquid. The proton NMR data indicate that hydrophobic as well as electrostatic interaction is solely responsible for such structural adaptation of NaDC in the presence of an ionic liquid. The host-guest interaction inside the aggregates is monitored using Coumarin-153 (C-153) and the location of C-153 is probed by varying the excitation wavelength from 375 nm to 440 nm and the two binding sites of the aggregates are affected in a different fashion in the presence of ionic liquid. Excitation in the blue region selects the fluorophores which preferably bind to the buried region of the aggregates, whereas 440 nm excitation corresponds to the guest molecules which are exposed to the solvent molecules. The average solvation time of C-153 is increased in the presence of 1.68 wt% [bmim]-BF4 at λexc = 440 nm i.e. the probe molecules relocate themselves to a more restricted region. However, the average solvation time became 2.6 times faster in the presence of 11.2 wt% [bmim]-BF4, which corresponds to a more polar and exposed region. The time resolved anisotropy measurements and polarity determined by pyrene also supported our results in addition to solvation dynamics measurements. In summary, ionic liquids can modulate the host-guest interaction of bile salt aggregates, which can be used as nanocarriers for drug delivery.

Regional Anesthesia and Valproate Sodium for the Prevention of Chronic Post-Amputation Pain

DTIC Science & Technology

2013-10-01

revised documents August Non-perishable Supplies ordered & received DUKE IRB approved study via expedited review September Submitted all revisions...2013 February March April May June July August September October HRPO request for revised, addtn’l docs VA approved protocol...A few candidate gene polymorphisms have been linked to pain susceptibility, including catechol-O-methyltranferase ( COMT ). This gene modulates

An exploratory investigation of polar organic compounds in waters from a lead–zinc mine and mill complex

USGS Publications Warehouse

Rostad, Colleen E.; Schmitt, Christopher J.; Schumacher, John G.; Leiker, Thomas J.

2011-01-01

Surface water samples were collected in 2006 from a lead mine-mill complex in Missouri to investigate possible organic compounds coming from the milling process. Water samples contained relatively high concentrations of dissolved organic carbon (DOC; greater than 20 mg/l) for surface waters but were colorless, implying a lack of naturally occurring aquatic humic or fulvic acids. Samples were extracted by three different types of solid-phase extraction and analyzed by electrospray ionization/mass spectrometry. Because large amounts of xanthate complexation reagents are used in the milling process, techniques were developed to extract and analyze for sodium isopropyl xanthate and sodium ethyl xanthate. Although these xanthate reagents were not found, trace amounts of the degradates, isopropyl xanthyl thiosulfonate and isopropyl xanthyl sulfonate, were found in most locations sampled, including the tailings pond downstream. Dioctyl sulfosuccinate, a surfactant and process filtering aid, was found at concentrations estimated at 350 μg/l at one mill outlet, but not downstream. Release of these organic compounds downstream from lead-zinc mine and milling areas has not previously been reported. A majority of the DOC remains unidentified.

Water-Quality Constituents, Dissolved-Organic-Carbon Fractions, and Disinfection By-Product Formation in Water from Community Water-Supply Wells in New Jersey, 1998-99

USGS Publications Warehouse

Hopple, Jessica A.; Barringer, Julia L.; Koleis, Janece

2007-01-01

Water samples were collected from 20 community water-supply wells in New Jersey to assess the chemical quality of the water before and after chlorination, to characterize the types of organic carbon present, and to determine the disinfection by-product formation potential. Water from the selected wells previously had been shown to contain concentrations of dissolved organic carbon (DOC) that were greater than 0.2 mg/L. Of the selected wells, five are completed in unconfined (or semi-confined) glacial-sediment aquifers of the Piedmont and Highlands (New England) Physiographic Provinces, five are completed in unconfined bedrock aquifers of the Piedmont Physiographic Province, and ten are completed in unconsolidated sediments of the Coastal Plain Physiographic Province. Four of the ten wells in the Coastal Plain are completed in confined parts of the aquifers; the other six are in unconfined aquifers. One or more volatile organic compounds (VOCs) were detected in untreated water from all of the 16 wells in unconfined aquifers, some at concentrations greater than maximum contaminant levels. Those compounds detected included aliphatic compounds such as trichloroethylene and 1,1,1-trichloroethane, aromatic compounds such as benzene, the trihalomethane compound, chloroform, and the gasoline additive methyl tert-butyl ether (MTBE). Concentrations of sodium and chloride in water from one well in a bedrock aquifer and sulfate in water from another exceeded New Jersey secondary standards for drinking water. The source of the sulfate was geologic materials, but the sodium and chloride probably were derived from human inputs. DOC fractions were separated by passing water samples through XAD resin columns to determine hydrophobic fractions from hydrophilic fractions. Concentrations of hydrophobic acids were slightly lower than those of combined hydrophilic acids, neutral compounds, and low molecular weight compounds in most samples. Water samples from the 20 wells were adjusted to a pH of 7, dosed with sodium hypochlorite, and incubated for 168 hours (seven days) at 25 ?C to form disinfection by-products (DBPs). Concentrations of the DBPs-trihalomethanes, haloacetic acids, haloacetonitriles, and chlorate-were measured. Concentrations of these compounds, with few exceptions, were higher in water from Coastal Plain wells than from wells in glacial and bedrock aquifers. The organic-carbon fractions were dosed with sodium hypochlorite, incubated for 168 hours at 25 ?C, and analyzed for trihalomethanes, haloacetic acids, haloacetonitriles, and chlorate. Concentrations of trihalomethanes and haloacetic acids were higher in most of the hydrophobic organic-acid fractions than in the hydrophilic fractions, with the highest concentrations in samples from Coastal Plain aquifers. Traces of haloacetonitriles were measured, mostly in the hydrophilic fraction. The aromaticity of the precursor DOC, as estimated by measurements of the absorbance of ultraviolet light at 254 nanometers, apparently is a factor in the DBP formation potentials determined, as aromaticity was greater in the samples that developed high concentrations of DBPs. VOCs may have contributed to the organic carbon present in some of the samples, but much of the DOC present in water from the 20 wells appeared to be natural in origin. The sediments of the Coastal Plain aquifers, in particular, contain substantial amounts of organic matter, which contribute ammonia, organic nitrogen, and aromatic DOC compounds to the ground water. Thus, the geologic characteristics of the aquifers appear to be a major factor in the potential for ground water to form DBPs when chlorinated.

Self-aggregation of bio-surfactants within ionic liquid 1-ethyl-3-methylimidazolium bromide: A comparative study and potential application in antidepressants drug aggregation

NASA Astrophysics Data System (ADS)

Banjare, Manoj Kumar; Behera, Kamalakanta; Kurrey, Ramsingh; Banjare, Ramesh Kumar; Satnami, Manmohan L.; Pandey, Siddharth; Ghosh, Kallol K.

2018-06-01

Aggregation behavior of bio-surfactants (BS) sodium cholate (NaC) and sodium deoxycholate (NaDC) within aqueous solution of ionic liquid (IL) 1-ethyl-3-methylimidazolium bromide [Emim][Br] has been investigated using surface tension, conductivity, steady state fluorescence, FT-IR and dynamic light scattering (DLS) techniques. Various interfacial and thermodynamic parameters are determined in the presence of different wt% of IL [Emim][Br]. Information regarding the local microenvironment and size of the aggregates is obtained from fluorescence and DLS, respectively. FT-IR spectral response is used to reveal the interactions taking place within aqueous NaC/NaDC micellar solutions. It is noteworthy to mention that increasing wt% of [Emim][Br] results in an increase in the spontaneity of micelle formation and the hydrophilic IL shows more affinity for NaC as compared to NaDC. Further, the micellar solutions of BS-[Emim][Br] are utilized for studying the aggregation of antidepressants drug promazine hydrochloride (pH). UV-vis spectroscopic investigation reveals interesting outcomes and the results show changes in spectral absorbance of PH drug on the addition of micellar solution (BS-[Emim][Br]). Highest binding affinity and most promising activity are shown for NaC as compared to NaDC.

Role of humoral mediators in, and influence of a liposomal formulation on, acute amphotericin B nephrotoxicity.

PubMed

Sabra, R; Zeinoun, N; Sharaf, L H; Ghali, R; Beshara, G; Serhal, H

2001-04-01

The mechanisms responsible for amphotericin B nephrotoxicity remain incompletely understood, but clearly involve reduction in renal blood flow and glomerular filtration rate. Both direct effects of amphotericin B on contractile vascular cells, and indirect effects, due to humoural mediators, have been proposed. This study examines the role of nitric oxide, endothelin and angiotensin II in the acute nephrotoxic effects of amphotericin B in rats, and compares the anti-fungal and nephrotoxic effects of liposomal amphotericin B and amphotericin B-deoxycholate. Anaesthetized rats were given infusions of amphotericin B-deoxycholate in the presence or absence of N-nitro-L-arginine, PD 145065, a non-specific endothelin receptor antagonist, and L-158809, an angiotensin II type I receptor antagonist, or increasing doses of liposomal amphotericin B. Amphotericin B-deoxycholate (0.03 mg/kg/min intravenously) caused a significant 44% reduction in glomerular filtration rate and 65% maximal fall in renal blood flow. N-Nitro-L-arginine-treated rats had a lower renal blood flow and glomerular filtration rate at baseline, but sustained similar reduction of 53% and 75% in these parameters, respectively. PD145065 and L-158809 did not modify these effects either. Increasing doses of liposomal amphotericin B (from 0.01 up to 0.50 mg/kg/min.) induced no change in either glomerular filtration rate or renal blood flow. In vitro susceptibility tests revealed similar potency for liposomal amphotericin B and amphotericin B-deoxycholate in their fungistatic effects and slightly higher potency for amphotericin B-deoxycholate in their fungicidal effect. These results suggest that endogenous endothelin, angiotensin II or nitric oxide systems are not involved in the nephrotoxic effects of amphotericin B. The liposomal amphotericin B results suggest that amphotericin B nephrotoxicity is due to a direct interaction of amphotericin B with renal cells that is prevented by its encapsulation in liposomes.

Purification and partial characterization of the major outer membrane protein of Chlamydia trachomatis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Caldwell, H.D.; Kromhout, J.; Schachter, J.

1981-03-01

Elementary bodies (EB) of Chlamydia trachomatis serotypes C, E, and L2 were extrinsically radioiodinated, and whole-cell lysates of these serotypes were compared by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Autoradiography of the polypeptide profiles identified a major surface protein with an apparent subunit molecular weight of 39,500 that was common to each C. trachomatis serotype. The abilities of nonionic (Triton X-100), dipolar ionic (Zwittergent TM-314), mild (sodium deoxycholate and sodium N-lauroyl sarcosine), and strongly anionic (SDS) detergents to extract this protein from intact EB of the L2 serotype were investigated by SDS-PAGE analysis of the soluble and insoluble fractions obtainedmore » after each detergent treatment. Only SDS readily extracted this protein from intact EB. Sarkosyl treatment selectively solubilized the majority of other EB proteins, leaving the 39,500-dalton protein associated with the Sarkosyl-insoluble fraction. Ultrastructural studies of the Sarkosyl-insoluble EB pellet showed it to consist of empty EB particles possessing an apparently intact outer membrane. No structural evidence for a peptidoglycan-like cell wall was found. Morphologically these chlamydial outer membrane complexes (COMC) resembled intact chlamydial EB outer membranes. The 39,500-dalton outer membrane protein was quantitatively extracted from COMC by treating them with 2% SDS at 60 degrees C. This protein accounted for 61% of the total COMC-associated protein, and its extraction resulted in a concomitant loss of the COMC membrane structure and morphology. The 39,500-dalton major outer membrane protein is a serogroup antigen of C. trachomatis organisms.« less

Two-channel dansyl/tryptophan emitters with a cholic acid bridge as reporters for local hydrophobicity within supramolecular systems based on bile salts.

PubMed

Gomez-Mendoza, M; Marin, M Luisa; Miranda, Miguel A

2014-11-14

The aim of the present work is to develop two-channel emitters to probe local hydrophobicity by means of fluorescence quenching within different biomimetic supramolecular environments. To achieve this goal, the dansyl (Dns) and tryptophan (Trp) fluorophores have been covalently attached to cholic acid (CA) in order to ensure simultaneous incorporation of the two emitting units into the same compartment. In principle, the two fluorophores of the synthesized Dns-CA-Trp probes could either exhibit an orthogonal behavior or display excited state interactions. The fluorescence spectra of 3β-Dns-CA-Trp showed a residual Trp emission band at ca. 350 nm and an enhanced Dns maximum in the 500-550 nm region. This reveals a partial intramolecular energy transfer, which is consistent with the Dns and Trp singlet energies. Thus, the two photoactive units are not orthogonal; nevertheless, 3β-Dns-CA-Trp seems appropriate as a two-channel reporter for the supramolecular systems of interest. Fluorescence quenching of 3β-Dns-CA-Trp by iodide (which remains essentially in bulk water) was examined within sodium cholate, sodium taurocholate, sodium deoxycholate and mixed micelles. Interestingly, a decrease in the emission intensity of the two bands was observed with increasing iodide concentrations. The most remarkable effect was observed for mixed micelles, where the quenching rate constants were one order of magnitude lower than in solution. As anticipated, the quenching efficiency by iodide decreased with increasing hydrophobicity of the microenvironment, a trend that can be correlated with the relative accessibility of the probe to the ionic quencher.

Metabolomic characterization of rhubarb species by capillary electrophoresis and ultra-high-pressure liquid chromatography.

PubMed

Tseng, Yufeng Jane; Kuo, Chun-Ting; Wang, San-Yuan; Liao, Hsiao-Wei; Chen, Guan-Yuan; Ku, Yuan-Ling; Shao, Wei-Cheng; Kuo, Ching-Hua

2013-10-01

This study developed CE and ultra-high-pressure LC (UHPLC) methods coupled with UV detectors to characterize the metabolomic profiles of different rhubarb species. The optimal CE conditions used a BGE with 15 mM sodium tetraborate, 15 mM sodium dihydrogen phosphate monohydrate, 30 mM sodium deoxycholate, and 30% ACN v/v at pH 8.3. The optimal UHPLC conditions used a mobile phase composed of 0.05% phosphate buffer and ACN with gradient elution. The gradient profile increased linearly from 10 to 21% ACN within the first 25 min, then increased to 33% ACN for the next 10 min. It took another 5 min to reach the 65% ACN, then for the next 5 min, it stayed unchanged. Sixteen samples of Rheum officinale and Rheum tanguticum collected from various locations were analyzed by CE and UHPLC methods. The metabolite profiles of CE were aligned and baseline corrected before chemometric analysis. Metabolomic signatures of rhubarb species from CE and UHPLC were clustered using principle component analysis and distance-based redundancy analysis; the clusters were not only able to discriminate different species but also different cultivation regions. Similarity measurements were performed by calculating the correlation coefficient of each sample with the authentic samples. Hybrid rhizome was clearly identified through similarity measurement of UHPLC metabolite profile and later confirmed by gene sequencing. The present study demonstrated that CE and UHPLC are efficient and effective tools to identify and authenticate herbs even coupled with simple detectors. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Comparison of bile salt/phosphatidylcholine mixed micelles in solubilization to sterols and stability.

PubMed

Guo, Qin; Cai, Jie; Li, Pengyu; Xu, Dongling; Ni, Xiaomin; Wen, Hui; Liu, Dan; Lin, Suizhen; Hu, Haiyan

2016-01-01

Androst-3β,5α,6β-triol (Triol) is a promising neuroprotective agent, but its poor solubility restricts its development into parenteral preparations. In this study, Triol is significantly solubilized by bile salt/phosphatidylcholine mixed micelles (BS/PC-MM). All BS/PC-MM systems are tested to remarkably improve the drug solubility with various stabilities after drug loading. Among them, the sodium glycocholate (SGC)/egg phosphatidylcholine (EPC) system with 2:1 ratio in weight and the total concentration of SGC and EPC of 100 mg/mL is proved to produce stable mixed micelles with high drug loading. It is found that the stability of drug-loaded mixed micelles is quite different, which might be related to the change in critical micelle concentration (CMC) after incorporating drugs. SGC/EPC and SGC/soya phosphatidylcholine (SPC) remain transparent under accelerated conditions and manifest a decreased CMC (dropping from 0.105 to 0.056 mg/mL and from 0.067 to 0.024 mg/mL, respectively). In contrast, swine bile acid-sodium salt (SBA-Na)/PC and sodium deoxycholate (SDC)/PC are accompanied by drug precipitation and reached the maximum CMC on the first and the third days, respectively. Interestingly, the variation of CMC under accelerated testing conditions highly matches the drug-precipitating event in the primary stability experiment. In brief, the bile salt/phosphatidylcholine system exists as a potential strategy of improving sterol drug solubility. CMC variation under accelerated testing conditions might be a simple and easy method to predict the stability of drug-loaded mixed micelles.

Radiation-induced graft copolymerization of poly(ethylene glycol) monomethacrylate onto deoxycholate-chitosan nanoparticles as a drug carrier

NASA Astrophysics Data System (ADS)

Pasanphan, Wanvimol; Rattanawongwiboon, Thitirat; Rimdusit, Pakjira; Piroonpan, Thananchai

2014-01-01

Poly(ethylene glycol) monomethacrylate-grafted-deoxycholate chitosan nanoparticles (PEGMA-g-DCCSNPs) were successfully prepared by radiation-induced graft copolymerization. The hydrophilic poly(ethylene glycol) monomethacrylate was grafted onto deoxycholate-chitosan in an aqueous system. The radiation-absorbed dose is an important parameter on degree of grafting, shell thickness and particle size of PEGMA-g-DCCSNPs. Owing to their amphiphilic architecture, PEGMA-g-DCCSNPs self-assembled into spherical core-shell nanoparticles in aqueous media. The particle size of PEGMA-g-DCCSNPs measured by TEM varied in the range of 70-130 nm depending on the degree of grafting as well as the irradiation dose. Berberine (BBR) as a model drug was encapsulated into the PEGMA-g-DCCSNPs. Drug release study revealed that the BBR drug was slowly released from PEGMA-g-DCCSNPs at a mostly constant rate of 10-20% in PBS buffer (pH 7.4) at 37 °C over a period of 23 days.

Quantitative Assessment of In-solution Digestion Efficiency Identifies Optimal Protocols for Unbiased Protein Analysis*

PubMed Central

León, Ileana R.; Schwämmle, Veit; Jensen, Ole N.; Sprenger, Richard R.

2013-01-01

The majority of mass spectrometry-based protein quantification studies uses peptide-centric analytical methods and thus strongly relies on efficient and unbiased protein digestion protocols for sample preparation. We present a novel objective approach to assess protein digestion efficiency using a combination of qualitative and quantitative liquid chromatography-tandem MS methods and statistical data analysis. In contrast to previous studies we employed both standard qualitative as well as data-independent quantitative workflows to systematically assess trypsin digestion efficiency and bias using mitochondrial protein fractions. We evaluated nine trypsin-based digestion protocols, based on standard in-solution or on spin filter-aided digestion, including new optimized protocols. We investigated various reagents for protein solubilization and denaturation (dodecyl sulfate, deoxycholate, urea), several trypsin digestion conditions (buffer, RapiGest, deoxycholate, urea), and two methods for removal of detergents before analysis of peptides (acid precipitation or phase separation with ethyl acetate). Our data-independent quantitative liquid chromatography-tandem MS workflow quantified over 3700 distinct peptides with 96% completeness between all protocols and replicates, with an average 40% protein sequence coverage and an average of 11 peptides identified per protein. Systematic quantitative and statistical analysis of physicochemical parameters demonstrated that deoxycholate-assisted in-solution digestion combined with phase transfer allows for efficient, unbiased generation and recovery of peptides from all protein classes, including membrane proteins. This deoxycholate-assisted protocol was also optimal for spin filter-aided digestions as compared with existing methods. PMID:23792921

Intraluminal proteome and peptidome of human urinary extracellular vesicles.

PubMed

Liu, Xinyu; Chinello, Clizia; Musante, Luca; Cazzaniga, Marta; Tataruch, Dorota; Calzaferri, Giulio; James Smith, Andrew; De Sio, Gabriele; Magni, Fulvio; Zou, Hequn; Holthofer, Harry

2015-06-01

Urinary extracellular vesicles (UEVs) are a novel source for disease biomarker discovery. However, Tamm-Horsfall protein (THP) is still a challenge for proteomic analysis since it can inhibit detection of low-abundance proteins. Here, we introduce a new approach that does not involve an ultracentrifugation step to enrich vesicles and that reduces the amount of THP to manageable levels. UEVs were dialyzed and ultrafiltered after reduction and alkylation. The retained fraction was digested with trypsin to reduce the remaining THP and incubated with deoxycholate (DOC). The internal peptidome and internal proteome were analyzed by LC-ESI-MS. A total of 942 different proteins and 3115 unique endogenous peptide fragments deriving from 973 different protein isoforms were identified. Around 82% of the key endosomal sorting complex required for transport components of UEVs generation could be detected from the intraluminal content. Our UEVs preparation protocol provides a simplified way to investigate the intraluminal proteome and peptidome, in particular the subpopulation of UEVs of the trypsin-resistant class of exosomes (positive for tumor susceptibility gene101) and eliminates the majority of interfering proteins such as THP. This method allows the possibility to study endoproteome and endopeptidome of UEVs, thus greatly facilitating biomarker discovery. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

The effects of salinity, pH, and dissolved organic matter on acute copper toxicity to the rotifer, Brachionus plicatilis ("L" strain).

PubMed

Arnold, W R; Diamond, R L; Smith, D S

2010-08-01

This paper presents data from original research for use in the development of a marine biotic ligand model and, ultimately, copper criteria for the protection of estuarine and marine organisms and their uses. Ten 48-h static acute (unfed) copper toxicity tests using the euryhaline rotifer Brachionus plicatilis ("L" strain) were performed to assess the effects of salinity, pH, and dissolved organic matter (measured as dissolved organic carbon; DOC) on median lethal dissolved copper concentrations (LC50). Reconstituted and natural saltwater samples were tested at seven salinities (6, 11, 13, 15, 20, 24, and 29 g/L), over a pH range of 6.8-8.6 and a range of dissolved organic carbon of <0.5-4.1 mg C/L. Water chemistry analyses (alkalinity, calcium, chloride, DOC, hardness, magnesium, potassium, sodium, salinity, and temperature) are presented for input parameters to the biotic ligand model. In stepwise multiple regression analysis of experimental results where salinity, pH, and DOC concentrations varied, copper toxicity was significantly related only to the dissolved organic matter content (pH and salinity not statistically retained; alpha=0.05). The relationship of the 48-h dissolved copper LC50 values and dissolved organic carbon concentrations was LC50 (microg Cu/L)=27.1xDOC (mg C/L)1.25; r2=0.94.

Activity and in vivo tracking of Amphotericin B loaded PLGA nanoparticles.

PubMed

Souza, A C O; Nascimento, A L; de Vasconcelos, N M; Jerônimo, M S; Siqueira, I M; R-Santos, L; Cintra, D O S; Fuscaldi, L L; Pires Júnior, O R; Titze-de-Almeida, R; Borin, M F; Báo, S N; Martins, O P; Cardoso, V N; Fernandes, S O; Mortari, M R; Tedesco, A C; Amaral, A C; Felipe, M S S; Bocca, A L

2015-05-05

The development of biocompatible polymeric nanoparticles has become an important strategy for optimizing the therapeutic efficacy of many classical drugs, as it may expand their activities, reduce their toxicity, increase their bioactivity and improve biodistribution. In this study, nanoparticles of Amphotericin B entrapped within poly (lactic-co-glycolic) acid and incorporated with dimercaptosuccinic acid (NANO-D-AMB) as a target molecule were evaluated for their physic-chemical characteristics, pharmacokinetics, biocompatibility and antifungal activity. We found high plasma concentrations of Amphotericin B upon treatment with NANO-D-AMB and a high uptake of nanoparticles in the lungs, liver and spleen. NANO-D-AMB exhibited antifungal efficacy against Paracoccidioides brasiliensis and induced much lower cytotoxicity levels compared to D-AMB formulation in vivo and in vitro. Together, these results confirm that NANO-D-AMB improves Amphotericin B delivery and suggest this delivery system as a potential alternative to the use of Amphotericin B sodium deoxycholate. Copyright © 2015 Elsevier Masson SAS. All rights reserved.

The influence of co-formers on the dissolution rates of co-amorphous sulfamerazine/excipient systems.

PubMed

Gniado, Katarzyna; Löbmann, Korbinian; Rades, Thomas; Erxleben, Andrea

2016-05-17

A comprehensive study on the dissolution properties of three co-amorphous sulfamerazine/excipient systems, namely sulfamerazine/deoxycholic acid, sulfamerazine/citric acid and sulfamerazine/sodium taurocholate (SMZ/DA, SMZ/CA and SMZ/NaTC; 1:1 molar ratio), is reported. While all three co-formers stabilize the amorphous state during storage, only co-amorphization with NaTC provides a dissolution advantage over crystalline SMZ and the reasons for this were analyzed. In the case of SMZ/DA extensive gelation of DA protects the amorphous phase from crystallization upon contact with buffer, but at the same time prevents the release of SMZ into solution. Disk dissolution studies showed an improved dissolution behavior of SMZ/CA compared to crystalline SMZ. However, enhanced dissolution properties were not seen in powder dissolution testing due to poor dispersibility. Co-amorphization of SMZ and NaTC resulted in a significant increase in dissolution rate, both in powder and disk dissolution studies. Copyright © 2016. Published by Elsevier B.V.

Fermentation by the human large intestine microbial community in an in vitro semicontinuous culture system.

PubMed Central

Miller, T L; Wolin, M J

1981-01-01

A semicontinuous culture of the microbial community of the human large intestine that was maintained over 81 days is described. The initial inoculum was feces, and about 200 ml of nutrient suspension was fed to 500 ml of fermentor contents once or twice daily. The nutrient suspension contained comminuted fibrous food, sodium deoxycholate, urea, acid-hydrolyzed casein, vitamins, and salts. The fermentation was monitored, and the major products were acetate, propionate, butyrate, methane, hydrogen, and carbon dioxide. The concentration of anaerobic bacteria was 2 X 10(9) per ml of culture contents and was 100 times that of fecal coliforms. When the nutrient suspension contained lettuce, celery, carrots, and unsweetened applesauce, the predominant nonsporeforming anaerobes isolated were Bacteroides species. When carrots and applesauce were omitted, the predominant nonsporeforming isolates were Fusobacterium species. On both diets, clostridia were isolated that resembled Clostridium clostridiiforme. The fermentation and bacteriological analyses indicated that the in vitro ecosystem appears to be a reasonable facsimile of the large intestine ecosystem. Images PMID:7027952

Removal of detergents from proteins and peptides in a spin-column format.

PubMed

Antharavally, Babu S

2012-08-01

To enable downstream analysis, it is critical to remove unbound detergents from protein and peptide samples. This unit describes the use of a high-performance resin that offers exceptional detergent removal for proteins and peptides. The easy-to-use spin format significantly improves results over the standard drip column and batch methodologies, with >95% removal of 1% to 5% detergents, including SDS, sodium deoxycholate, CHAPS, Triton X-100, Triton X-114, NP-40, Brij-35, octyl glucoside, octyl thioglucoside, and lauryl maltoside, with high recovery of proteins and peptides. Detergent removal efficiency is evaluated using colorimetric methods and mass spectrometry (MS). BSA tryptic peptides have been successfully analyzed by liquid chromatography-tandem mass spectrometry (LC-MS/MS) and matrix-assisted laser desorption/ionization (MALDI)-MS for identification of protein, following detergent removal using the resin. Advantages of this method include speed (less than 15 min), efficient detergent removal, and high recovery of proteins and peptides. © 2012 by John Wiley & Sons, Inc.

Polymyxin B moderates acidosis and hypotension in established, experimental gram-negative septicemia.

PubMed

Flynn, P M; Shenep, J L; Stokes, D C; Fairclough, D; Hildner, W K

1987-11-01

Polymyxin B (PMB), an antibiotic, and sodium deoxycholate (NaD), a bile salt, are surface-active agents. Each protected mice against an otherwise lethal challenge with purified endotoxin (P less than .001). To determine if either of these agents was effective in treating established, overwhelming gram-negative septicemia, we infected rabbits by intraperitoneal injection of Escherichia coli K1. Animals were treated with moxalactam 1 hr after infection, then randomly assigned to groups receiving either saline, PMB, or NaD. Serial samples of blood were assayed for bacterial concentration, levels of plasma endotoxin, arterial blood gases, and complete blood cell counts. Physiologic functions were monitored continuously. Although levels of bacteremia and endotoxemia were similar in all three groups, rabbits receiving PMB had significantly higher mean arterial blood pressure, blood pH, and bicarbonate concentrations than did control rabbits (P less than .05). Rabbits receiving NaD fared no better than controls. In this model, PMB moderates some of the deleterious effects of established, overwhelming gram-negative bacterial sepsis.

[Glutamate-binding membrane proteins from human platelets].

PubMed

Gurevich, V S; Popov, Iu G; Gorodinskiĭ, A I; Dambinova, S A

1991-09-01

Solubilization of the total membrane fraction of human platelets in a 2% solution of sodium deoxycholate and subsequent affinity chromatography on glutamate agarose resulted in two protein fractions possessing a glutamate-binding activity. As can be evidenced from radioligand binding data, the first fraction contains two types of binding sites (Kd1 = 1 microM, Bmax 1 = 100 pmol/mg of protein; Kd2 = 9.3 microMm Bmax2 = 395 pmol/mg of protein). The second fraction has only one type of binding sites (Kd = 1 microM, Bmax = = 110 pmol/mg of protein). SDS-PAAG electrophoresis revealed the presence in the first fraction of proteins with Mr of 14, 24, 56 and 155 kDa, whereas the second fraction was found to contain 14, 46, 71 and 155 kDa proteins. Solid phase immunoenzymatic analysis using poly- and monoclonal specific antibodies against mammalian brain glutamate-binding proteins revealed a marked immunochemical similarity of the isolated protein fractions with human brain synaptic membrane glutamate-binding proteins.

Exploiting bilosomes for delivering bioactive polysaccharide isolated from Enteromorpha intestinalis for hacking hepatocellular carcinoma.

PubMed

Matloub, Azza Abdelmageed; Salama, Alaa Hamed; Aglan, Hadeer Ahmed; AbouSamra, Mona Mahmoud; ElSouda, Sahar Salah Mohamed; Ahmed, Hanaa Hamdy

2018-04-01

Bile salts containing vesicles (bilosomes) represent a portentous vesicular carrier that showed prosperous results in delivering active moieties in the gastrointestinal tract (GIT). In this study, bilosomes were exploited to deliver sulfated polysaccharide-protein complexes of Enteromorpha intestinalis (EHEM) and enhance its activity against hepatocellular carcinoma as well as resist harsh GIT conditions. Bilosomes were prepared using the sodium salt of three different bile acids (cholic, deoxycholic, taurodeoxycholic) and two different nonionic surfactants (Span 40 and 65). The effects of experimental variables were thoroughly studied to obtain an optimum formulation loading EHEM. The selected formulation (EH-Bilo-2) prepared with sodium cholate and Span 65 displayed nano-sized (181.1 ± 16.80 nm) spherical vesicles with reasonable entrapment efficiency (71.60 ± 0.25%) and controlled release properties; and thus was investigated as anti-hepatocarcinogenic candidate for in vivo studies. Treatment of hepatocellular carcinoma (HCC) bearing rats with EH-Bilo-2 experienced significant decrease in serum α-fetoprotein, endoglin, lipocalin-2, and heat shock protein 70 levels vs. the untreated counterparts. Furthermore, the photomicrographs of their liver tissue sections showed focal area of degenerated pleomorphic hepatocytes with fine fibrosis originating from the portal area. Thus, the optimized bilosomal formulation is a promising delegate for tackling hepatocellular carcinoma owing to its powerful anti-cancer and anti-angiogenic activity.

Dietary sodium gluconate protects rats from large bowel cancer by stimulating butyrate production.

PubMed

Kameue, Chiyoko; Tsukahara, Takamitsu; Yamada, Kouji; Koyama, Hironari; Iwasaki, Yoshie; Nakayama, Keizo; Ushida, Kazunari

2004-04-01

Butyrate has an antitumorigenic effect on colorectal cancer cell lines. Dietary sodium gluconate (GNA) promotes butyrate production in the large intestine. Accordingly, we examined the effect of dietary GNA on tumorigenesis in the large intestine in rats. Male Fisher-344 rats (n = 32) were divided into 4 groups: 2 diets (with or without 50 g GNA/kg basal diet) x 2 treatments (with or without carcinogen administration). Colonic tumors were induced by 3 intraperitoneal injections of azoxymethane (15 mg/kg body wt, 1 time/wk) and dietary deoxycholic acid (2 g/kg basal diet). The experiment was conducted for 33 wk except for a few rats. Ingestion of GNA increased cecal butyrate concentration at the end of experiment (P < 0.01). No tumor development occurred in the untreated groups. Ingestion of GNA decreased the incidence of tumors in rats administered the carcinogen (37.5 vs. 100%, P < 0.05). Ingestion of GNA also decreased the mean number of tumors per rat (0.5 +/- 0.8 vs. 2.8 +/- 1.5, P < 0.01). beta-Catenin accumulation and TdT-mediated dUTP nick end labeling (TUNEL) positive cells in tumors were histochemically examined. The results of this study suggested that the antitumorigenic effect of GNA may involve the stimulation of apoptosis through enhanced butyrate production in the large intestine.

Lipoamino acid-based micelles as promising delivery vehicles for monomeric amphotericin B.

PubMed

Serafim, Cláudia; Ferreira, Inês; Rijo, Patrícia; Pinheiro, Lídia; Faustino, Célia; Calado, António; Garcia-Rio, Luis

2016-01-30

Lipoamino acid-based micelles have been developed as delivery vehicles for the hydrophobic drug amphotericin B (AmB). The micellar solubilisation of AmB by a gemini lipoamino acid (LAA) derived from cysteine and its equimolar mixtures with the bile salts sodium cholate (NaC) and sodium deoxycholate (NaDC), as well as the aggregation sate of the drug in the micellar systems, was studied under biomimetic conditions (phosphate buffered-saline, pH 7.4) using UV-vis spectroscopy. Pure surfactant systems and equimolar mixtures were characterized by tensiometry and important parameters were determined, such as critical micelle concentration (CMC), surface tension at the CMC (γCMC), maximum surface excess concentration (Γmax), and minimum area occupied per molecule at the water/air interface (Amin). Rheological behaviour from viscosity measurements at different shear rates was also addressed. Solubilisation capacity was quantified in terms of molar solubilisation ratio (χ), micelle-water partition coefficient (KM) and Gibbs energy of solubilisation (ΔGs°). Formulations of AmB in micellar media were compared in terms of drug loading, encapsulation efficiency, aggregation state of AmB and in vitro antifungal activity against Candida albicans. The LAA-containing micellar systems solubilise AmB in its monomeric and less toxic form and exhibit in vitro antifungal activity comparable to that of the commercial formulation Fungizone. Copyright © 2015 Elsevier B.V. All rights reserved.

Self-aggregation of bio-surfactants within ionic liquid 1-ethyl-3-methylimidazolium bromide: A comparative study and potential application in antidepressants drug aggregation.

PubMed

Banjare, Manoj Kumar; Behera, Kamalakanta; Kurrey, Ramsingh; Banjare, Ramesh Kumar; Satnami, Manmohan L; Pandey, Siddharth; Ghosh, Kallol K

2018-06-15

Aggregation behavior of bio-surfactants (BS) sodium cholate (NaC) and sodium deoxycholate (NaDC) within aqueous solution of ionic liquid (IL) 1-ethyl-3-methylimidazolium bromide [Emim][Br] has been investigated using surface tension, conductivity, steady state fluorescence, FT-IR and dynamic light scattering (DLS) techniques. Various interfacial and thermodynamic parameters are determined in the presence of different wt% of IL [Emim][Br]. Information regarding the local microenvironment and size of the aggregates is obtained from fluorescence and DLS, respectively. FT-IR spectral response is used to reveal the interactions taking place within aqueous NaC/NaDC micellar solutions. It is noteworthy to mention that increasing wt% of [Emim][Br] results in an increase in the spontaneity of micelle formation and the hydrophilic IL shows more affinity for NaC as compared to NaDC. Further, the micellar solutions of BS-[Emim][Br] are utilized for studying the aggregation of antidepressants drug promazine hydrochloride (pH). UV-vis spectroscopic investigation reveals interesting outcomes and the results show changes in spectral absorbance of PH drug on the addition of micellar solution (BS-[Emim][Br]). Highest binding affinity and most promising activity are shown for NaC as compared to NaDC. Copyright © 2018 Elsevier B.V. All rights reserved.

A food-grade process for isolation and partial purification of bacteriocins of lactic acid bacteria that uses diatomite calcium silicate.

PubMed Central

Coventry, M J; Gordon, J B; Alexander, M; Hickey, M W; Wan, J

1996-01-01

Bacteriocins, including nisin, pediocin PO2, brevicin 286, and piscicolin 126, were extracted from fermentation media by adsorption onto Micro-Cel (a food-grade diatomite calcium silicate anticaking agent) and subsequent desorption. The optimal conditions for desorption of piscicolin 126 were determined and applied to other bacteriocins, and the relative purities of the desorbed preparations were compared. Piscicolin was not successfully desorbed from Micro-Cel at pH 1.0 to 12.0, with organic solvents, or by increase of ionic strength up to 1 M NaCl. However, 25 and 75% of the bacteriocin activity was desorbed by using 1% sodium deoxycholate and 1% sodium dodecyl sulfate (SDS), respectively. Higher levels (up to 100%) of desorption were achieved by repeated elution or by an increase in surfactant concentration. Desorption of piscicolin with 1/10 volume of SDS solution resulted in a preparation with 10 times concentration in activity, equivalent to that of ammonium sulfate preparations (409,600 to 819,200 activity units/ml). Determination of organic nitrogen (N) content revealed that the desorbed piscicolin preparations were substantially free of proteinaceous substances (approximately 92 to 99%) compared with original culture supernatants and ammonium sulfate preparations. Nisin, pediocin, and brevicin were also desorbed with 1% SDS with a similar level of purification. PMID:8633875

Supercritical carbon dioxide treatment as a method for polymorph preparation of deoxycholic acid.

PubMed

Tozuka, Yuichi; Kawada, Dai; Oguchi, Toshio; Yamamoto, Keiji

2003-09-16

A new polymorph of deoxycholic acid (DCA) was formed by using a supercritical carbon dioxide treatment. Deoxycholic acid crystals were stored in a pressure vessel purged with carbon dioxide at 12MPa, 60 degrees C for definite intervals. After storage for 1h in supercritical carbon dioxide (SC-CO2), new X-ray diffraction (XRD) peaks, not found in the bulk DCA crystal, were observed at 2theta = 7.4 degrees, 9.7 degrees and 14.0 degrees. The intensities of the new diffraction peaks increased with an increase in storage time, whereas the intensities of the diffraction peaks due to bulk DCA crystal decreased. On the DSC curves, the crystals obtained showed an exothermic peak at around 155 degrees C followed by the melting peak of bulk DCA crystal at 175 degrees C. By the temperature-controlled powder XRD measurement, the crystals obtained were found to be a metastable form of DCA. The polymorphs of DCA have not been reported; therefore, the SC-CO2 treatment would be a peculiar method to obtain a DCA polymorph.

Microbiota-Derived Metabolic Factors Reduce Campylobacteriosis in Mice.

PubMed

Sun, Xiaolun; Winglee, Kathryn; Gharaibeh, Raad Z; Gauthier, Josee; He, Zhen; Tripathi, Prabhanshu; Avram, Dorina; Bruner, Steven; Fodor, Anthony; Jobin, Christian

2018-05-01

Campylobacter jejuni, a prevalent foodborne bacterial pathogen, exploits the host innate response to induce colitis. Little is known about the roles of microbiota in C jejuni-induced intestinal inflammation. We investigated interactions between microbiota and intestinal cells during C jejuni infection of mice. Germ-free C57BL/6 Il10 -/- mice were colonized with conventional microbiota and infected with a single dose of C jejuni (10 9 colony-forming units/mouse) via gavage. Conventional microbiota were cultured under aerobic, microaerobic, or anaerobic conditions and orally transplanted into germ-free Il10 -/- mice. Colon tissues were collected from mice and analyzed by histology, real-time polymerase chain reaction, and immunoblotting. Fecal microbiota and bile acids were analyzed with 16S sequencing and high-performance liquid chromatography with mass spectrometry, respectively. Introduction of conventional microbiota reduced C jejuni-induced colitis in previously germ-free Il10 -/- mice, independent of fecal load of C jejuni, accompanied by reduced activation of mammalian target of rapamycin. Microbiota transplantation and 16S ribosomal DNA sequencing experiments showed that Clostridium XI, Bifidobacterium, and Lactobacillus were enriched in fecal samples from mice colonized with microbiota cultured in anaerobic conditions (which reduce colitis) compared with mice fed microbiota cultured under aerobic conditions (susceptible to colitis). Oral administration to mice of microbiota-derived secondary bile acid sodium deoxycholate, but not ursodeoxycholic acid or lithocholic acid, reduced C jejuni-induced colitis. Depletion of secondary bile acid-producing bacteria with antibiotics that kill anaerobic bacteria (clindamycin) promoted C jejuni-induced colitis in specific pathogen-free Il10 -/- mice compared with the nonspecific antibiotic nalidixic acid; colitis induction by antibiotics was associated with reduced level of luminal deoxycholate. We identified a mechanism by which the microbiota controls susceptibility to C jejuni infection in mice, via bacteria-derived secondary bile acids. Copyright © 2018 AGA Institute. Published by Elsevier Inc. All rights reserved.

Preparation of the 3-monosulphates of cholic acid, chenodeoxycholic acid and deoxycholic acid.

PubMed Central

Haslewood, E S; Haslewood, G A

1976-01-01

1. The 3-sulphates of cholic, chenodeoxycholic and deoxycholic acids were prepared as crystalline disodium salts. 2. The method described shows that it is possible to prepare specific sulphate esters of polyhydroxy bile acids and to remove protecting acyl groups without removing the sulphate. 3. A study of bile acid sulphate solvolysis showed that none of the usual methods give the original bile acid in major yield in a single step. 4. An understanding of the preparation, properties and methods of solvolysis of bile acid sulphates is basic for investigations of cholestasis and liver disease. PMID:938488

A Conserved Steroid Binding Site in Cytochrome c Oxidase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qin, Ling; Mills, Denise A.; Buhrow, Leann

2010-09-02

Micromolar concentrations of the bile salt deoxycholate are shown to rescue the activity of an inactive mutant, E101A, in the K proton pathway of Rhodobacter sphaeroides cytochrome c oxidase. A crystal structure of the wild-type enzyme reveals, as predicted, deoxycholate bound with its carboxyl group at the entrance of the K path. Since cholate is a known potent inhibitor of bovine oxidase and is seen in a similar position in the bovine structure, the crystallographically defined, conserved steroid binding site could reveal a regulatory site for steroids or structurally related molecules that act on the essential K proton path.

Multi-residue analysis of pharmaceuticals in aqueous environmental samples by online solid-phase extraction-ultra-high-performance liquid chromatography-tandem mass spectrometry: optimisation and matrix effects reduction by quick, easy, cheap, effective, rugged and safe extraction.

PubMed

Bourdat-Deschamps, Marjolaine; Leang, Sokha; Bernet, Nathalie; Daudin, Jean-Jacques; Nélieu, Sylvie

2014-07-04

The aim of this study was to develop and optimise an analytical method for the quantification of a bactericide and 13 pharmaceutical products, including 8 antibiotics (fluoroquinolones, tetracyclines, sulfonamides, macrolide), in various aqueous environmental samples: soil water and aqueous fractions of pig slurry, digested pig slurry and sewage sludge. The analysis was performed by online solid-phase extraction coupled to ultra-high performance liquid chromatography with tandem mass spectrometry (online SPE-UHPLC-MS-MS). The main challenge was to minimize the matrix effects observed in mass spectrometry, mostly due to ion suppression. They depended on the dissolved organic carbon (DOC) content and its origin, and ranged between -22% and +20% and between -38% and -93% of the signal obtained without matrix, in soil water and slurry supernatant, respectively. The very variable levels of these matrix effects suggested DOC content cut-offs above which sample purification was required. These cut-offs depended on compounds, with concentrations ranging from 30 to 290mgC/L for antibiotics (except tylosine) up to 600-6400mgC/L for the most apolar compounds. A modified Quick, Easy, Cheap, Effective, Rugged and Safe (QuEChERS) extraction procedure was therefore optimised using an experimental design methodology, in order to purify samples with high DOC contents. Its performance led to a compromise, allowing fluoroquinolone and tetracycline analysis. The QuEChERS extraction salts consisted therefore of sodium acetate, sodium sulfate instead of magnesium sulfate, and sodium ethylenediaminetetraacetate (EDTA) as a ligand of divalent cations. The modified QuEChERS procedure employed for the extraction of pharmaceuticals in slurry and digested slurry liquid phases reduced the matrix effects for almost all the compounds, with extraction recoveries generally above 75%. The performance characteristics of the method were evaluated in terms of linearity, intra-day and inter-day precision, accuracy and limits of quantification, which reached concentration ranges of 5-270ng/L in soil water and sludge supernatant, and 31-2400ng/L in slurry and digested slurry supernatants, depending on the compounds. The new method was then successfully applied for the determination of the target compounds in environmental samples. Copyright © 2014 Elsevier B.V. All rights reserved.

Evaluation of cephamycins as supplements to selective agar for detecting Campylobacter spp. in chicken carcass rinses.

PubMed

Chon, Jung-Whan; Kim, Young-Ji; Kim, Hong-Seok; Kim, Dong-Hyeon; Kim, Hyunsook; Song, Kwang-Young; Sung, Kidon; Seo, Kun-Ho

2016-04-16

Although cefoperazone is the most commonly used antibiotic in Campylobacter-selective media, the distribution of cefoperazone-resistant bacteria such as extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli is increasing. Here we evaluated the potential of cephamycins for use as supplements to improve modified charcoal-cefoperazone-deoxycholate agar (mCCDA) by replacing cefoperazone with the same concentrations (32 mg/L) of cefotetan (modified charcoal-cefotetan-deoxycholate agar, mCCtDA) and cefoxitin (modified charcoal-cefoxitin-deoxycholate agar, mCCxDA). In chicken carcass rinse samples, the number of mCCDA plates detecting for Campylobacter (18/70, 26%) was significantly lower than that of mCCtDA (42/70, 60%) or mCCxDA plates (40/70, 57%). The number of mCCDA plates (70/70, 100%) that were contaminated with non-Campylobacter species was significantly higher than that of mCCtDA (20/70, 29%) or mCCxDA plates (21/70, 30%). The most common competing species identified using mCCDA was ESBL-producing E. coli, while Pseudomonas species frequently appeared on mCCtDA and mCCxDA. Copyright © 2016. Published by Elsevier B.V.

Effects of lipopolysaccharide biosynthesis mutations on K1 polysaccharide association with the Escherichia coli cell surface.

PubMed

Jiménez, Natalia; Senchenkova, Sofya N; Knirel, Yuriy A; Pieretti, Giuseppina; Corsaro, Maria M; Aquilini, Eleonora; Regué, Miguel; Merino, Susana; Tomás, Juan M

2012-07-01

The presence of cell-bound K1 capsule and K1 polysaccharide in culture supernatants was determined in a series of in-frame nonpolar core biosynthetic mutants from Escherichia coli KT1094 (K1, R1 core lipopolysaccharide [LPS] type) for which the major core oligosaccharide structures were determined. Cell-bound K1 capsule was absent from mutants devoid of phosphoryl modifications on L-glycero-D-manno-heptose residues (HepI and HepII) of the inner-core LPS and reduced in mutants devoid of phosphoryl modification on HepII or devoid of HepIII. In contrast, in all of the mutants, K1 polysaccharide was found in culture supernatants. These results were confirmed by using a mutant with a deletion spanning from the hldD to waaQ genes of the waa gene cluster to which individual genes were reintroduced. A nuclear magnetic resonance (NMR) analysis of core LPS from HepIII-deficient mutants showed an alteration in the pattern of phosphoryl modifications. A cell extract containing both K1 capsule polysaccharide and LPS obtained from an O-antigen-deficient mutant could be resolved into K1 polysaccharide and core LPS by column chromatography only when EDTA and deoxycholate (DOC) buffer were used. These results suggest that the K1 polysaccharide remains cell associated by ionically interacting with the phosphate-negative charges of the core LPS.

Effects of Lipopolysaccharide Biosynthesis Mutations on K1 Polysaccharide Association with the Escherichia coli Cell Surface

PubMed Central

Jiménez, Natalia; Senchenkova, Sofya N.; Knirel, Yuriy A.; Pieretti, Giuseppina; Corsaro, Maria M.; Aquilini, Eleonora; Regué, Miguel; Merino, Susana

2012-01-01

The presence of cell-bound K1 capsule and K1 polysaccharide in culture supernatants was determined in a series of in-frame nonpolar core biosynthetic mutants from Escherichia coli KT1094 (K1, R1 core lipopolysaccharide [LPS] type) for which the major core oligosaccharide structures were determined. Cell-bound K1 capsule was absent from mutants devoid of phosphoryl modifications on l-glycero-d-manno-heptose residues (HepI and HepII) of the inner-core LPS and reduced in mutants devoid of phosphoryl modification on HepII or devoid of HepIII. In contrast, in all of the mutants, K1 polysaccharide was found in culture supernatants. These results were confirmed by using a mutant with a deletion spanning from the hldD to waaQ genes of the waa gene cluster to which individual genes were reintroduced. A nuclear magnetic resonance (NMR) analysis of core LPS from HepIII-deficient mutants showed an alteration in the pattern of phosphoryl modifications. A cell extract containing both K1 capsule polysaccharide and LPS obtained from an O-antigen-deficient mutant could be resolved into K1 polysaccharide and core LPS by column chromatography only when EDTA and deoxycholate (DOC) buffer were used. These results suggest that the K1 polysaccharide remains cell associated by ionically interacting with the phosphate-negative charges of the core LPS. PMID:22522903

Antifungal Efficacy of an Intravenous Formulation Containing Monomeric Amphotericin B, 5-Fluorocytosine, and Saline for Sodium Supplementation

PubMed Central

Alvarez, Celeste; Andes, David R.; Kang, Jeong Yeon; Krug, Carmen; Kwon, Glen S.

2017-01-01

Purpose Amphotericin B (AmB) and 5-fluorocytosine (5-FC) exhibit additive to synergistic activity against systemic mycoses. Incompatibility of prescribed formulations precludes concomitant IV administration, a route with distinct advantages. Previously, we used PEG-DSPE micelles to produce a reformulation of Fungizone (AmB-SD), AmB solubilized by sodium deoxycholate, called mAmB-90. Herein, we describe a second reformulation that facilitates co-delivery of mAmB-90 and 5-FC, and evaluate the effect of PEG-DSPE micelles on the combination’s activity against Candida albicans. Methods We assessed the effect of 5-FC addition on the stability, in vitro toxicity, and antifungal efficacy of mAmB-90. The aggregation state and particle size of mAmB-90 combined with 5-FC (FmAmB-90) was evaluated over 48 hours. Hemolytic activity was measured in vitro. Antifungal activity was determined in vitro against C. albicans. The efficacy of monotherapy and combination treatment was evaluated in a neutropenic mouse model of disseminated candidiasis. Results The aggregation state, particle size, and hemolytic activity of mAmB-90 were unaffected by 5-FC. While antifungal activity was similar in vitro, mAmB-90 alone and combined with 5-FC was more potent than AmB-SD in vivo. Conclusions Short-term stability and in vivo efficacy of our formulation suggest potential to simultaneously deliver AmB and 5-FC for potent antifungal efficacy. PMID:28205003

Antifungal Efficacy of an Intravenous Formulation Containing Monomeric Amphotericin B, 5-Fluorocytosine, and Saline for Sodium Supplementation.

PubMed

Alvarez, Celeste; Andes, David R; Kang, Jeong Yeon; Krug, Carmen; Kwon, Glen S

2017-05-01

Amphotericin B (AmB) and 5-fluorocytosine (5-FC) exhibit additive to synergistic activity against systemic mycoses. Incompatibility of prescribed formulations precludes concomitant IV administration, a route with distinct advantages. Previously, we used PEG-DSPE micelles to produce a reformulation of Fungizone (AmB-SD), AmB solubilized by sodium deoxycholate, called mAmB-90. Herein, we describe a second reformulation that facilitates co-delivery of mAmB-90 and 5-FC, and evaluate the effect of PEG-DSPE micelles on the combination's activity against Candida albicans. We assessed the effect of 5-FC addition on the stability, in vitro toxicity, and antifungal efficacy of mAmB-90. The aggregation state and particle size of mAmB-90 combined with 5-FC (FmAmB-90) was evaluated over 48 h. Hemolytic activity was measured in vitro. Antifungal activity was determined in vitro against C. albicans. The efficacy of monotherapy and combination treatment was evaluated in a neutropenic mouse model of disseminated candidiasis. The aggregation state, particle size, and hemolytic activity of mAmB-90 were unaffected by 5-FC. While antifungal activity was similar in vitro, mAmB-90 alone and combined with 5-FC was more potent than AmB-SD in vivo. Short-term stability and in vivo efficacy of our formulation suggest potential to simultaneously deliver AmB and 5-FC for potent antifungal efficacy.

Pluronic®-bile salt mixed micelles.

PubMed

Patel, Vijay; Ray, Debes; Bahadur, Anita; Ma, Junhe; Aswal, V K; Bahadur, Pratap

2018-06-01

The present study was aimed to examine the interaction of two bile salts viz. sodium cholate (NaC) and sodium deoxycholate (NaDC) with three ethylene polyoxide-polypropylene polyoxide (PEO-PPO-PEO) triblock copolymers with similar PPO but varying PEO micelles with a focus on the effect of pH on mixed micelles. Mixed micelles of moderately hydrophobic Pluronic ® P123 were examined in the presence of two bile salts and compared with those from very hydrophobic L121 and very hydrophilic F127. Both the bile salts increase the cloud point (CP) of copolymer solution and decreased apparent micelle hydrodynamic diameter (D h ). SANS study revealed that P123 forms small spherical micelles showing a decrease in size on progressive addition of bile salts. The negatively charged mixed micelles contained fewer P123 molecules but progressively rich in bile salt. NaDC being more hydrophobic displays more pronounced effect than NaC. Interestingly, NaC shows micellar growth in acidic media which has been attributed to the formation of bile acids by protonation of carboxylate ion and subsequent solubilization. In contrast, NaDC showed phase separation at higher concentration. Nuclear Overhauser effect spectroscopy (NOESY) experiments provided information on interaction and location of bile salts in micelles. Results are discussed in terms of hydrophobicity of bile salts and Pluronics ® and the site of bile salt in polymer micelles. Proposed molecular interactions are useful to understand more about bile salts which play important role in physiological processes. Copyright © 2018 Elsevier B.V. All rights reserved.

Cold-perfusion decellularization of whole-organ porcine pancreas supports human fetal pancreatic cell attachment and expression of endocrine and exocrine markers

PubMed Central

Elebring, Erik; Kuna, Vijay K; Kvarnström, Niclas; Sumitran-Holgersson, Suchitra

2017-01-01

Despite progress in the field of decellularization and recellularization, the outcome for pancreas has not been adequate. This might be due to the challenging dual nature of pancreas with both endocrine and exocrine tissues. We aimed to develop a novel and efficient cold-perfusion method for decellularization of porcine pancreas and recellularize acellular scaffolds with human fetal pancreatic stem cells. Decellularization of whole porcine pancreas at 4°C with sodium deoxycholate, Triton X-100 and DNase efficiently removed cellular material, while preserving the extracellular matrix structure. Furthermore, recellularization of acellular pieces with human fetal pancreatic stem cells for 14 days showed attached and proliferating cells. Both endocrine (C-peptide and PDX1) and exocrine (glucagon and α-amylase) markers were expressed in recellularized tissues. Thus, cold-perfusion can successfully decellularize porcine pancreas, which when recellularized with human fetal pancreatic stem cells shows relevant endocrine and exocrine phenotypes. Decellularized pancreas is a promising biomaterial and might translate to clinical relevance for treatment of diabetes. PMID:29118967

Aqueous-core PEG-coated PLA nanocapsules for an efficient entrapment of water soluble anticancer drugs and a smart therapeutic response.

PubMed

Cosco, Donato; Paolino, Donatella; De Angelis, Francesco; Cilurzo, Felisa; Celia, Christian; Di Marzio, Luisa; Russo, Diego; Tsapis, Nicolas; Fattal, Elias; Fresta, Massimo

2015-01-01

Novel PEGylated PLA nanocapsules (PEG-AcPLA nanocapsules), loading high percentage of water soluble drugs have been formulated by using multiple emulsion technique without using conventional stabilizers. In particular, sodium deoxycholate hydrate has been used to obtain nanocapsules having a mean diameter of about 200 nm and a polydispersity index of ∼ 0.1. Gemcitabine hydrochloride (GEM) was used as a model of hydrophilic drug. GEM-loaded PEG-AcPLA nanocapsules demonstrated a high encapsulation efficacy and the drug-release followed a zero-order kinetic. MTT-assay evidenced an increased antitumor effect of GEM-loaded PEG-AcPLA nanocapsules compared to the free drug on different cancer cell lines and confocal laser scanning microscopy showed a significant improvement of cell interaction at 6h of incubation. In vivo anticancer activity of GEM-loaded PEG-AcPLA nanocapsules using two xenograft murine models of human solid tumors further supported the efficacy of this nano-drug, thus providing preliminary results about the potential clinical application of this innovative nanotherapeutic. Copyright © 2014 Elsevier B.V. All rights reserved.

Differential effects of lipid depletion on membrane sodium-plus-potassium ion-dependent adenosine triphosphatase and potassium ion-dependent phosphatase.

PubMed Central

Wheeler, K P; Walker, J A

1975-01-01

The phospholipid-dependence of the (Na-++K-+)-dependent ATPase (adenosine triphosphatase) (EC 3.6.1.3) and associated K-+-dependent phosphatase activity (EC 3.6.1.7) have been compared. Unlike the (Na-++K-+)-dependent ATPase activities, the K-+-dependent phosphatase activities of a number of different preparations were not closely correlated with their total phospholipid contents. After partial lipid depletion with a single extraction in Lubrol W the residual ATPase and phosphatase activities were correlated, but their magnitudes were quite different: on average only about 5% of the former remained compared with 50% of the latter. A similar differential effect on these activities was found after extraction with deoxycholate. In contrast with the ATPase, consistent restoration of the phosphatase activity of Lubrol-extracted enzymes by added exogenous phospholipids was not observed. We conclude that, although the K-+-dependent phosphatase may be lipid-dependent, the lipid requirement must be different from that of the complete ATPase system, and this difference should help investigations of their relationship. PMID:167727

The Pseudomonas putida peptidoglycan-associated outer membrane lipoprotein is involved in maintenance of the integrity of the cell cell envelope.

PubMed Central

Rodríguez-Herva, J J; Ramos-Gonzalez, M I; Ramos, J L

1996-01-01

Pseudomonas putida 14G-3, a derivative of the natural soil inhabitant P. putida KT2440, exhibited a chromosomal insertion of a mini-Tn5/'phoA transposon that resulted in reduced ability to colonize soil. In vitro characterization of P. putida 14G-3 revealed that it exhibited an altered cell morphology and envelope, as revealed by electron microscopy. The derived strain was sensitive to sodium dodecyl sulfate, deoxycholate, and EDTA, produced clumps when it reached high cell densities in the late logarithmic growth phase, and did not grow on low-osmolarity medium. The P. putida DNA surrounding the mini-Tn5/'phoA insertion was cloned and used as a probe to rescue the wild-type gene, which was sequenced. Comparison of the deduced peptide sequence with sequences in the Swiss-Prot database allowed the knocked-out gene to be identified as that encoding the peptidoglycan-associated lipoprotein (Pal or OprL) of P. putida. The protein was identified in coupled transcription and translation assays in vitro. PMID:8626299

Crab digestive phospholipase: a new invertebrate member.

PubMed

Cherif, Slim; Ben Bacha, Abir; Ben Ali, Yassine; Horchani, Habib; Rekik, Wiem; Gargouri, Youssef

2010-01-01

Crab digestive phospholipase (CDPL) was purified from the hepatopancreas of Carcinus mediterraneus crabs. Homogeneous enzyme was obtained after two chromatography steps: anion exchange and size exclusion HPLC column. Homogeneous CDPL has a molecular mass of 14 kDa as determined by SDS/PAGE analysis. Unlike known digestive phospholipases like porcine PLA(2) (PPPL), CDPL displayed its maximal activity at 50 degrees C and not at 37 degrees C. A specific activity of 40 U/mg for the purified CDPL was measured using PC as substrate under optimal conditions (pH 8 and 50 degrees C) in the presence of 8 mM sodium deoxycholate (NaDC) and 10 mM CaCl(2). In contrast to PPPL, purified CDPL was completely inactivated at 60 degrees C. The N-terminal sequence was determined by automatic Edman degradation. No similarity between 12 N-terminal amino acid residues of CDPL was found with those of known digestive phospholipases. CDPL appears to be a new member of invertebrate phospholipases, and it is potentially useful for treat phospholipid-rich industrial effluents, or to synthesize useful chemical compounds which can be used in the food industry.

The food-borne pathogen Campylobacter jejuni depends on the AddAB DNA repair system to defend against bile in the intestinal environment.

PubMed

Gourley, Christopher R; Negretti, Nicholas M; Konkel, Michael E

2017-10-31

Accurate repair of DNA damage is crucial to ensure genome stability and cell survival of all organisms. Bile functions as a defensive barrier against intestinal colonization by pathogenic microbes. Campylobacter jejuni, a leading bacterial cause of foodborne illness, possess strategies to mitigate the toxic components of bile. We recently found that growth of C. jejuni in medium with deoxycholate, a component of bile, caused DNA damage consistent with the exposure to reactive oxygen species. We hypothesized that C. jejuni must repair DNA damage caused by reactive oxygen species to restore chromosomal integrity. Our efforts focused on determining the importance of the putative AddAB DNA repair proteins. A C. jejuni addAB mutant demonstrated enhanced sensitivity to deoxycholate and was impaired in DNA double strand break repair. Complementation of the addAB mutant restored resistance to deoxycholate, as well as function of the DNA double strand break repair system. The importance of these findings translated to the natural host, where the AddAB system was found to be required for efficient C. jejuni colonization of the chicken intestine. This research provides new insight into the molecular mechanism utilized by C. jejuni, and possibly other intestinal pathogens, to survive in the presence of bile.

Disaggregation of adenylate cyclase during polyacrylamide-gel electrophoresis in mixtures of ionic and non-ionic detergents.

PubMed

Newby, A C; Chrambach, A

1979-02-01

1. Adenylate cyclase [ATP pyrophosphate-lyase (cyclizing), EC 4.6.1.1] solubilized from the rat liver plasma membrane with 1% Lubrol PX and partially purified by gel filtration in buffer containing 0.01% Lubrol PX was physically characterized by polyacrylamide-gel electrophoresis. 2. The molecular radius determined for the partially purified enzyme was 4.9nm, compared with the value of 3.9nm obtained for the enzyme before gel filtration. 3. This difference, representing an approximate doubling of the molecular volume of the enzyme, implied that aggregation with itself or other proteins had occurred during partial purification. 4. Aggregation was not reversed by electrophoresis in the presence of high Lubrol concentrations. 5. Substitution of deoxycholate or N-dodecylsarcosinate for Lubrol PX either for solubilization or during electrophoresis led to poorer resolution of membrane proteins at concentrations giving greater than 70% loss of enzyme activity. 6. Partially purified adenylate cyclase was electrophoresed in the presence of mixed micelles of Lubrol PX and deoxycholate or Lubrol PX and N-dodecylsarcosinate. Different mixtures were examined simultaneously in a suitable apparatus. 7. Electrophoresis in the presence of 0.1% Lubrol plus 0.03% deoxycholate decreased the molecular radius of the cyclase to 4.0nm, with greater than 90% recovery of enzymic activity. The net charge of the enzyme was also increased, indicating ionic detergent binding. 8. With 0.1% Lubrol plus 0.03% N-dodecylsarcosinate the molecular radius was 4.3nm, recovery approx. 50% and net charge similar to that seen in Lubrol plus deoxycholate. 9. The resolution of cyclase from bulk protein, on an analytical scale, was improved in the presence of detergent mixtures, as compared with resolution in Lubrol alone. 10. The results demonstrate the usefulness of polyacrylamide-gel electrophoresis to detect and overcome aggregation problems with membrane proteins and suggest that detergent mixtures in specific ratios may be useful in the purification of adenylate cyclase and other intrinsic membrane proteins.

Immunogenic Activity of a Ribosomal Fraction Obtained from Mycobacterium tuberculosis

PubMed Central

Youmans, Anne S.; Youmans, Guy P.

1965-01-01

Youmans, Anne S. (Northwestern University Medical School, Chicago, Ill.), and Guy P. Youmans. Immunogenic activity of a ribosomal fraction obtained from Mycobacterium tuberculosis. J. Bacteriol. 89:1291–1298. 1965.—The highly immunogenic particulate fraction obtained from mechanically ruptured cells of the H37Ra strain of Mycobacterium tuberculosis was suspended and centrifuged at 20,360 × g. The supernatant liquid from this centrifugation was centrifuged at 56,550 × g to remove the larger particles, and the supernatant liquid from this was centrifuged at 144,000 × g to obtain a ribosomal fraction. The sediments from the first two centrifugations were highly immunogenic, but the ribosomal fraction showed only slight capacity to immunize mice. However, when the ribosomal fraction was mixed with Freund's incomplete adjuvant, the immunogenic activity was equivalent to the particulate fraction from which it was prepared. To test the hypothesis that some membranous substance in the particulate fraction was acting as an adjuvant for the smaller particles in the ribosomal fraction, portions of the particulate fraction were treated separately with each of the membrane-disrupting agents, sodium deoxycholate, sodium lauryl sulfate, and 1 m sodium chloride. The treated materials were then centrifuged at 144,000 × g, and the sediments were tested for immunogenicity both with and without the addition of Freund's incomplete adjuvant. Without the adjuvant, the immunizing activities were very weak or absent; with the adjuvant, they were equivalent to that of the particulate fraction from which they were prepared. Other factors which have been found to damage or destroy membranes, such as freezing and thawing, and heat, also significantly decreased the immunogenic activity of the particulate fraction unless it was incorporated into Freund's incomplete adjuvant. The larger particles which sedimented at 56,550 × g were also treated with sodium lauryl sulfate and sodium chloride. Again, immunogenicity was greatly reduced but was fully restored by use of Freund's incomplete adjuvant. The data suggest, then, that the immunizing component of the particulate fraction is a substance (ribosomal?) which sediments at 144,000 × g, but for maximal immunizing activity a labile, possibly membranous, moiety of the mycobacterial cell, which has the properties of an adjuvant, is required. PMID:14293000

Promoting effects of chemical permeation enhancers on insulin permeation across TR146 cell model of buccal epithelium in vitro.

PubMed

Xue, Xiao-yan; Zhou, Ying; Chen, Ying-ying; Meng, Jing-ru; Jia, Min; Hou, Zheng; Bai, Hui; Mao, Xing-gang; Luo, Xiao-xing

2012-04-01

To find potential enhancers for facilitating the buccal delivery of insulin, a TR146 cell-culture model of buccal epithelium, cultured on commercially available insert plates, was used to evaluate the permeability-enhancing effects of several traditional and new types of chemical enhancers, including N-acetyl-L-cysteine (NAC), sodium deoxycholate (SDC), sodium nitroprusside (SNP), reduced glutathione (GSH), glutamine (Gln), chitosan (CS), L-arginine (Arg), 1-dodecylazacycloheptan-2-one (Azone), and soybean lecithin (SPC) (50 and 10 μg/mL respectively). Permeability studies were performed to determine the enhancing effects of these compounds on insulin permeation across the cell-culture model. The enhancing effects of the enhancers were assessed by calculating the apparent permeability coefficients and enhancement ratio. Cytotoxicity of the permeation enhancers at different concentrations was investigated by using the methylthiazolydiphenyl-tetrazolium bromide (MTT) assay. Results showed that 50 μg/mL of NAC, SDC, GSH, CS, Arg, Azone, SPC, SNP, and 10 μg/mL of SNP had a significant enhancing effect on promoting the transport of insulin across the TR146 cell model. MTT assays showed that 50 μg/mL of Gln, Azone, SDC, SNP, Arg, 10 μg/mL SDC, and Arg had obvious toxic effects on TR146 cells. Therefore, NAC, GSH, CS, SPC, and SNP appear to be safe, effective permeability enhancers that promote the transport of insulin across the TR146 cell-culture model of buccal epithelium and may be potential enhancers for buccal delivery of insulin with both low toxicity and high efficiency.

Survival of Campylobacter jejuni during Stationary Phase: Evidence for the Absence of a Phenotypic Stationary-Phase Response

PubMed Central

Kelly, Alison F.; Park, Simon F.; Bovill, Richard; Mackey, Bernard M.

2001-01-01

When Campylobacter jejuni NCTC 11351 was grown microaerobically in rich medium at 39°C, entry into stationary phase was followed by a rapid decline in viable numbers to leave a residual population of 1% of the maximum number or less. Loss of viability was preceded by sublethal injury, which was seen as a loss of the ability to grow on media containing 0.1% sodium deoxycholate or 1% sodium chloride. Resistance of cells to mild heat stress (50°C) or aeration was greatest in exponential phase and declined during early stationary phase. These results show that C. jejuni does not mount the normal phenotypic stationary-phase response which results in enhanced stress resistance. This conclusion is consistent with the absence of rpoS homologues in the recently reported genome sequence of this species and their probable absence from strain NCTC 11351. During prolonged incubation of C. jejuni NCTC 11351 in stationary phase, an unusual pattern of decreasing and increasing heat resistance was observed that coincided with fluctuations in the viable count. During stationary phase of Campylobacter coli UA585, nonmotile variants and those with impaired ability to form coccoid cells were isolated at high frequency. Taken together, these observations suggest that stationary-phase cultures of campylobacters are dynamic populations and that this may be a strategy to promote survival in at least some strains. Investigation of two spontaneously arising variants (NM3 and SC4) of C. coli UA585 showed that a reduced ability to form coccoid cells did not affect survival under nongrowth conditions. PMID:11319108

Modified filter-aided sample preparation (FASP) method increases peptide and protein identifications for shotgun proteomics.

PubMed

Ni, Mao-Wei; Wang, Lu; Chen, Wei; Mou, Han-Zhou; Zhou, Jie; Zheng, Zhi-Guo

2017-01-30

Mass spectrometry (MS)-based protein identification depends mainly on protein extraction and digestion. Although sodium dodecyl sulfate (SDS) can preclude enzymatic digestion and interfere with MS analysis, it is still the most widely used surfactant in these steps. To overcome these disadvantages, a SDS-compatible proteomic technique for SDS removal prior to MS-based analyses was developed, namely filter-aided sample preparation (FASP). Herein, based on the effectiveness of sodium deoxycholate and a detergent removal spin column, we developed a modified FASP (mFASP) method and compared its overall performance, total number of peptides and proteins identified for shotgun proteomic experiments with that of the FASP method. Identification of 4570 ± 392 and 9139 ± 317 peptides and description of 862 ± 46 and 1377 ± 33 protein groups with two or more peptides from the ovarian cancer cell line A2780 was accomplished by FASP and mFASP methods, respectively. The mFASP method (21.2 ± 0.2%) had higher average peptide to protein coverage than FASP method (13.2 ± 0.5%). More hydrophobic peptides were identified by mFASP than by FASP, as indicated by the GRAVY score distribution. The reported method enables reliable and efficient identification of proteins and peptides in whole-cell extracts containing SDS. The new approach allows for higher throughput (the simultaneous identification of more proteins), a more comprehensive investigation of proteins, and potentially the discovery of new biomarkers. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

Opposing effects of bile acids deoxycholic acid and ursodeoxycholic acid on signal transduction pathways in oesophageal cancer cells.

PubMed

Abdel-Latif, Mohamed M; Inoue, Hiroyasu; Reynolds, John V

2016-09-01

Ursodeoxycholic acid (UDCA) was reported to reduce bile acid toxicity, but the mechanisms underlying its cytoprotective effects are not fully understood. The aim of the present study was to examine the effects of UDCA on the modulation of deoxycholic acid (DCA)-induced signal transduction in oesophageal cancer cells. Nuclear factor-κB (NF-κB) and activator protein-1 (AP-1) activity was assessed using a gel shift assay. NF-κB activation and translocation was performed using an ELISA-based assay and immunofluorescence analysis. COX-2 expression was analysed by western blotting and COX-2 promoter activity was assessed by luciferase assay. DCA induced NF-κB and AP-1 DNA-binding activities in SKGT-4 and OE33 cells. UDCA pretreatment inhibited DCA-induced NF-κB and AP-1 activation and NF-κB translocation. This inhibitory effect was coupled with a blockade of IκB-α degradation and inhibition of phosphorylation of IKK-α/β and ERK1/2. Moreover, UDCA pretreatment inhibited COX-2 upregulation. Using transient transfection of the COX-2 promoter, UDCA pretreatment abrogated DCA-induced COX-2 promoter activation. In addition, UDCA protected oesophageal cells from the apoptotic effects of deoxycholate. Our findings indicate that UDCA inhibits DCA-induced signalling pathways in oesophageal cancer cells. These data indicate a possible mechanistic role for the chemopreventive actions of UDCA in oesophageal carcinogenesis.

Dermabrasion

MedlinePlus

... Back Injectable Deoxycholic Acid Injectable Hyaluronic Acid Injectable Poly-l-lactic Acid Injectable Polymethylmethacrylate + Bovine Collagen Filler ... After treatment most patients report little or no pain, though some require pain relievers as well as ...

Age Spots

MedlinePlus

... Back Injectable Deoxycholic Acid Injectable Hyaluronic Acid Injectable Poly-l-lactic Acid Injectable Polymethylmethacrylate + Bovine Collagen Filler ... procedure Does the treatment hurt? What are my pain management and anesthesia options? How long is the ...

Laser Therapy

MedlinePlus

... Back Injectable Deoxycholic Acid Injectable Hyaluronic Acid Injectable Poly-l-lactic Acid Injectable Polymethylmethacrylate + Bovine Collagen Filler ... patient relax during the procedure and to reduce pain. Topical anesthetics are used to numb small treatment ...

Unwanted Tattoos

MedlinePlus

... Back Injectable Deoxycholic Acid Injectable Hyaluronic Acid Injectable Poly-l-lactic Acid Injectable Polymethylmethacrylate + Bovine Collagen Filler ... procedure? Does tattoo removal hurt? What are my pain management and anesthesia options? How long is the ...

Selective removal of monoterpenes from bergamot oil by inclusion in deoxycholic acid.

PubMed

Fantin, Giancarlo; Fogagnolo, Marco; Maietti, Silvia; Rossetti, Stefano

2010-05-12

A new approach for removing monoterpenes (MTs) from bergamot oil by selective inclusion in deoxycholic acid (DCA) is proposed. The inclusion process is very efficient, the included fraction being composed mainly of limonene (71.7%) and gamma-terpinene (19.8%). On the other hand, the deterpenated bergamot oil fraction showed for the linalool and linalyl acetate derivatives significant increases from 16.6 and 21.4% to 18.3 and 42.2%, respectively. The major advantages of this methodology are its simplicity, the mild conditions employed, and the quantitative recovery of both host (DCA) and guest (monoterpenes) compounds. Differential scanning calorimetry (DSC), thermal gravimetry (TG), powder X-ray diffractometry (XRPD), infrared spectroscopy (IR), and proton magnetic resonance ((1)H NMR) analysis were used to investigate and characterize the inclusion compounds.

Solid polymeric electrolyte based dye-sensitized solar cell with improved stability

NASA Astrophysics Data System (ADS)

Prasad, Narottam; Kumar, Manish; Patel, K. R.; Roy, M. S.

2018-05-01

The impact of polymeric electrolyte was investigated over the performance of dye-sensitized solar cell made with Rose Bengal as sensitizer. Further, the selective influence of TiCl4 treatment and pre-sensitizer deoxycholic acid on nc-TiO2 photoanode was determined in terms of improvement in conversion efficiency of the cell. It is found that the effect of TiCl4 treatment was comparatively more than pre-sensitization with de-oxy cholic acid towards improving the efficiency of the cell. The conversion efficiency on TiCl4 treatment was 0.2% whereas on pre-sensitization with deoxy chollic acid it was 0.1%. The combined effect of both TiCl4 treatment & pre-sensitization with deoxycholic acid leads conversion efficiency to 0.33%.

Comparison of In Vitro Activity of Liposomal Nystatin against Aspergillus Species with Those of Nystatin, Amphotericin B (AB) Deoxycholate, AB Colloidal Dispersion, Liposomal AB, AB Lipid Complex, and Itraconazole

PubMed Central

Oakley, Karen L.; Moore, Caroline B.; Denning, David W.

1999-01-01

We compared the in vitro activity of liposomal nystatin (Nyotran) with those of other antifungal agents against 60 Aspergillus isolates. Twelve isolates were itraconazole resistant. For all isolates, geometric mean (GM) MICs (micrograms per milliliter) were 2.30 for liposomal nystatin, 0.58 for itraconazole, 0.86 for amphotericin B (AB) deoxycholate, 9.51 for nystatin, 2.07 for liposomal AB, 2.57 for AB lipid complex, and 0.86 for AB colloidal dispersion. Aspergillus terreus (GM, 8.72 μg/ml; range, 8 to 16 μg/ml) was significantly less susceptible to all of the polyene drugs than all other species (P = 0.0001). PMID:10223948

Experimental Edema Disease of Swine (E. Coli ENTEROTOXEMIA) I. Detection and Preparation of an Active Principle

PubMed Central

Clugston, R. E.; Nielsen, N. O.

1974-01-01

Freeze-thaw lysates prepared from strains of Escherichia coli belonging to serogroups O138, O139, and O141 contained a principle (edema disease principle) which induced edema disease in swine. All freeze-thaw lysates contained endotoxic activity that tended to obscure the edema disease syndrome and methods were developed to reduce such activity. Freeze-thaw lysates prepared from E. coli O139 induced the most characteristic edema disease syndrome. Partially purified edema disease principle prepared from O139 freeze-thaw lysates by sequential precipitation with ammonium sulphate and streptomycin sulphate had increased specific activity with markedly reduced endotoxic activity. This material was insoluble at acidic pH but readily soluble at alkaline pH. The effective molecular weight of edema disease principle, based on retention and filtration properties of diaflo membranes, appeared to be greater than 50,000 and less than 100,000. The biological activity of edema disease principle was thermolabile. Sodium deoxycholate treatment of edema disease principle further reduced endotoxic activity. A thermolabile, ammonium sulphate precipitable material was prepared from E. coli O139 that induced a predictable syndrome which resembled edema disease clinically and pathologically following intravenous inoculation in pigs. PMID:4272954

Erbium-doped fiber laser passively mode locked with few-layer WSe2/MoSe2 nanosheets

NASA Astrophysics Data System (ADS)

Mao, Dong; She, Xiaoyang; Du, Bobo; Yang, Dexing; Zhang, Wending; Song, Kun; Cui, Xiaoqi; Jiang, Biqiang; Peng, Tao; Zhao, Jianlin

2016-03-01

Few-layer transition-metal dichalcogenide WSe2/MoSe2 nanosheets are fabricated by a liquid exfoliation technique using sodium deoxycholate bile salt as surfactant, and their nonlinear optical properties are investigated based on a balanced twin-detector measurement scheme. It is demonstrated that both types of nanosheets exhibit nonlinear saturable absorption properties at the wavelength of 1.55 μm. By depositing the nanosheets on side polished fiber (SPF) or mixing the nanosheets with polyvinyl alcohol (PVA) solution, SPF-WSe2 saturable absorber (SA), SPF-MoSe2 SA, PVA-WSe2 SA, and PVA-MoSe2 SA are successfully fabricated and further tested in erbium-doped fiber lasers. The SPF-based SA is capable of operating at the high pump regime without damage, and a train of 3252.65 MHz harmonically mode-locked pulses are obtained based on the SPF-WSe2 SA. Soliton mode locking operations are also achieved in the fiber laser separately with other three types of SAs, confirming that the WSe2 and MoSe2 nanosheets could act as cost-effective high-power SAs for ultrafast optics.

A Biochemical and Morphological Study of Rat Liver Microsomes

PubMed Central

Moulé, Y.; Rouiller, C.; Chauveau, J.

1960-01-01

Microsomes isolated by differential centrifugation from a rat liver homogenate in 0.88 M sucrose solution have been studied from the biochemical and morphological point of view. 1. Under these experimental conditions, the "total microsome" fraction was obtained by centrifuging the cytoplasmic extract free of nuclei and mitochondria, for 3 hours at 145,000 g. Morphologically, the total microsomes consist mainly of "rough-surfaced membranes" and "smooth" ones. 2. The total microsomes have been divided into 2 subfractions so that the 1st microsomal fraction contains the "rough" vesicles (2 hours centrifugation at 40,000 g) while the 2nd microsomal fraction consists essentially of smooth vesicles, free particles, and ferritin (centrifugation of the supernatant at 145,000 g for 3 hours). 3. By the action of 0.4 per cent sodium deoxycholate in 0.88 M sucrose, it was possible to obtain a pellet for each of the 2 fractions which consisted of dense particles, rich in RNA, poor in lipids, and which represented about 50 to 60 percent of the RNA and 10 to 15 per cent of the proteins. The results have been discussed taking into consideration the hypothesis of the presence of RNA in the membranes of microsomal vesicles. PMID:14424705

Pharmacokinetics of timolol in aqueous humor sampled by microdialysis after topical administration of thermosetting gels.

PubMed

Wei, Gang; Ding, Ping-Tian; Zheng, Jun-Min; Lu, Wei-Yue

2006-01-01

In order to develop a thermosetting gel-based formulation, the ocular pharmacokinetics of timolol was studied utilizing microdialysis sampling technique after topical administration. A linear microdialysis probe was characterized and implanted in the anterior chamber of a rabbit. Dialysate samples collected from the aqueous humor (AH) were directly injected into the HPLC system without any pre-treatment and no interference was observed in the blank sample. The measured in vitro recovery of the probe was 57.67%; however, the in vivo recovery significantly decreased to 16.78% when assessed by the retrodialysis method, which was used to calculate the timolol concentration in AH. Although in the initial 15 min the drug concentrations in AH were comparable to that of the timolol solution, increased Cmax and significantly improved ocular bioavailability were obtained for the gel. When sodium deoxycholate (DC) was incorporated in the gel as a penetration enhancer, a 2-fold increment in the ocular bioavailability was achieved with an increased Cmax and significantly suspended Tmax. The results demonstrated that microdialysis coupled to HPLC is a powerful tool to investigate the ocular pharmacokinetic, and hence facilitates the design of ophthalmic formulations. Copyright 2005 John Wiley & Sons, Ltd.

Molecular size of the gamma-aminobutyric acidA receptor purified from mammalian cerebral cortex.

PubMed

Mamalaki, C; Barnard, E A; Stephenson, F A

1989-01-01

The hydrodynamic behaviour of both the soluble and purified gamma-aminobutyric acidA (GABAA) receptor of bovine or rat cerebral cortex has been investigated in solution in Triton X-100 or in 3-[(3-cholamidopropyl)-dimethylammonio]-1-propanesulphonate (CHAPS). In all the hydrodynamic separations made, it was found that the binding activities for GABA, benzodiazepine, and (where detectable) t-butylbicyclophosphorothionate comigrated. Conditions were established for gel exclusion chromatography and for sucrose density gradient velocity sedimentation that maintain the GABAA receptor in a nonaggregated form. Using these conditions, the molecular weight of the bovine GABAA receptor in the above-mentioned detergents was calculated using the H2O/2H2O method. A value of Mr 230,000-240,000 was calculated for the bovine pure GABAA receptor purified in sodium deoxycholate/Triton X-100 media. A value of Mr 284,000-290,000 was calculated for the nonaggregated bovine or rat cortex receptor in CHAPS, but the Stokes radius is smaller in the latter than in the former medium and the detergent binding in CHAPS is underestimated. Thus the deduced Mr, 240,000, is the best estimate by this method.

Study on the effects of electrolytes and solvents in the determination of quaternary ammonium ions by nonaqueous capillary electrophoresis with contactless conductivity detection.

PubMed

Buglione, Lucia; See, Hong Heng; Hauser, Peter C

2013-01-01

A study on the separation of lipophilic quaternary ammonium cations in NACE coupled with contactless conductivity detection (NACE-C(4)D) is presented. The suitability of different salts dissolved in various organic solvents as running electrolytes in NACE-C(4)D was investigated. A solvent mixture of methanol/acetonitrile at a ratio of 90%:10% v/v showed the best results. Deoxycholic acid sodium salt as BGE was found to provide exceptional high stability with low baseline noise that leads to highest S/N ratios for the target analytes among all BGEs tested. Under the optimum conditions, capillaries with different internal diameters were examined and an id of 50 μm was found to give best detection sensitivity. The proposed method was validated and showed good linearity in the range from 2.5 to 200 μM, low limits of detection (0.1-0.7 μM) and acceptable reproducibility of peak area (intraday RSD 0.1-0.7%, n = 3; interday RSD 5.9-9.4%, n = 3). © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Physicochemical characteristics of insulin secretion granules

PubMed Central

Coore, H. G.; Hellman, B.; Pihl, E.; Täljedal, I.-B.

1969-01-01

β-Granules were prepared from micro-dissected pancreatic islets of obese–hyperglycaemic mice. This fraction contained 60% of the insulin, 30% of the cytochrome oxidase, 16% of the acid phosphatase activity and 20% of the protein present in whole islets. The isolated granules retained a heavy metal during fractionation. Optimum conditions for granule stability were low ionic strength and pH6, the granules being unexpectedly fragile at pH7·4. The stability of the granules was unaffected by sucrose in the concentration range 50–320mm, but 1% (w/v) sodium deoxycholate released all insulin. A solubilizing effect was also noted with ATP and citrate. Spinning through 1·6m-sucrose yielded a further purification in relation to mitochondria and acid-phosphatase-carrying particles but virtually no purification in relation to protein. Electron microscopy revealed that the major contaminants were rough-surfaced vesicles and membranes. A separation of granules from acid phosphatase was achieved by phase distribution in polyethylene glycol and dextran. The location of the enzyme to the interphase was so pronounced in systems buffered with lithium phosphate that the technique may be used for future purification of acid-phosphatase-carrying particles from the β-cells. ImagesPLATE 1 PMID:4887194

Disaggregation of adenylate cyclase during polyacrylamide-gel electrophoresis in mixtures of ionic and non-ionic detergents

PubMed Central

Newby, Andrew C.; Chrambach, Andreas

1979-01-01

1. Adenylate cyclase [ATP pyrophosphate-lyase (cyclizing), EC 4.6.1.1] solubilized from the rat liver plasma membrane with 1% Lubrol PX and partially purified by gel filtration in buffer containing 0.01% Lubrol PX was physically characterized by polyacrylamide-gel electrophoresis. 2. The molecular radius determined for the partially purified enzyme was 4.9nm, compared with the value of 3.9nm obtained for the enzyme before gel filtration. 3. This difference, representing an approximate doubling of the molecular volume of the enzyme, implied that aggregation with itself or other proteins had occurred during partial purification. 4. Aggregation was not reversed by electrophoresis in the presence of high Lubrol concentrations. 5. Substitution of deoxycholate or N-dodecylsarcosinate for Lubrol PX either for solubilization or during electrophoresis led to poorer resolution of membrane proteins at concentrations giving greater than 70% loss of enzyme activity. 6. Partially purified adenylate cyclase was electrophoresed in the presence of mixed micelles of Lubrol PX and deoxycholate or Lubrol PX and N-dodecylsarcosinate. Different mixtures were examined simultaneously in a suitable apparatus. 7. Electrophoresis in the presence of 0.1% Lubrol plus 0.03% deoxycholate decreased the molecular radius of the cyclase to 4.0nm, with greater than 90% recovery of enzymic activity. The net charge of the enzyme was also increased, indicating ionic detergent binding. 8. With 0.1% Lubrol plus 0.03% N-dodecylsarcosinate the molecular radius was 4.3nm, recovery approx. 50% and net charge similar to that seen in Lubrol plus deoxycholate. 9. The resolution of cyclase from bulk protein, on an analytical scale, was improved in the presence of detergent mixtures, as compared with resolution in Lubrol alone. 10. The results demonstrate the usefulness of polyacrylamide-gel electrophoresis to detect and overcome aggregation problems with membrane proteins and suggest that detergent mixtures in specific ratios may be useful in the purification of adenylate cyclase and other intrinsic membrane proteins. ImagesFig. 3. PMID:435255

Laser/Light Therapy for Birthmarks

MedlinePlus

... Back Injectable Deoxycholic Acid Injectable Hyaluronic Acid Injectable Poly-l-lactic Acid Injectable Polymethylmethacrylate + Bovine Collagen Filler ... birthmark type, until the patient's goal is achieved. Pain and recovery time is minimal. Procedure is non- ...

The impact of detergents on the tissue decellularization process: A ToF-SIMS study.

PubMed

White, Lisa J; Taylor, Adam J; Faulk, Denver M; Keane, Timothy J; Saldin, Lindsey T; Reing, Janet E; Swinehart, Ilea T; Turner, Neill J; Ratner, Buddy D; Badylak, Stephen F

2017-03-01

Biologic scaffolds are derived from mammalian tissues, which must be decellularized to remove cellular antigens that would otherwise incite an adverse immune response. Although widely used clinically, the optimum balance between cell removal and the disruption of matrix architecture and surface ligand landscape remains a considerable challenge. Here we describe the use of time of flight secondary ion mass spectroscopy (ToF-SIMS) to provide sensitive, molecular specific, localized analysis of detergent decellularized biologic scaffolds. We detected residual detergent fragments, specifically from Triton X-100, sodium deoxycholate and sodium dodecyl sulphate (SDS) in decellularized scaffolds; increased SDS concentrations from 0.1% to 1.0% increased both the intensity of SDS fragments and adverse cell outcomes. We also identified cellular remnants, by detecting phosphate and phosphocholine ions in PAA and CHAPS decellularized scaffolds. The present study demonstrates ToF-SIMS is not only a powerful tool for characterization of biologic scaffold surface molecular functionality, but also enables sensitive assessment of decellularization efficacy. We report here on the use of a highly sensitive analytical technique, time of flight secondary ion mass spectroscopy (ToF-SIMS) to characterize detergent decellularized scaffolds. ToF-SIMS detected cellular remnants and residual detergent fragments; increased intensity of the detergent fragments correlated with adverse cell matrix interactions. This study demonstrates the importance of maintaining a balance between cell removal and detergent disruption of matrix architecture and matrix surface ligand landscape. This study also demonstrates the power of ToF-SIMS for the characterization of decellularized scaffolds and capability for assessment of decellularization efficacy. Future use of biologic scaffolds in clinical tissue reconstruction will benefit from the fundamental results described in this work. Copyright © 2016 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Decellularized amnion scaffold with activated PRP: a new paradigm dressing material for burn wound healing.

PubMed

Kshersagar, Jeevitaa; Kshirsagar, Ravi; Desai, Shashikant; Bohara, Raghvendra; Joshi, Meghnad

2018-03-05

Direct application of amnion has greater risk of immunological rejection and infection. Decellularization is an effective method to lower the risk of immune complications and infections. The bioreactor assembly with multiple cassettes was designed for decellurization of multiple amnions with different cell types simultaneously in single run. A detergent-based protocol was modified to remove all cellular components from amnion and diminish the DNA content to render it non-immunogenic. Amnion (n = 10) were treated with 2% sodium dodecyl sulphate (SDS), 5% dimethyl sulfoxide (DMSO) and 2% sodium deoxycholeate (SD). Decellularized amnion samples were analyzed by haematoxylin-eosin staining (HE), Alcian blue pH 1 (AB-pH-1), 4,6-diamnionidino-2-phenylindol (DAPI), Massion's trichrome stain, DNA quantification, mechanical testing and scanning electron microscopy (SEM). Histological analysis showed complete removal of cellular components and the histoarchitecture of scaffold remained intact. Amnion scaffold activated with platelet rich plasma (PRP) and calcium chloride composition supported better adherence to the wound than amnion alone. Only single application showed good healing. In vivo assessment of activated amnion revealed stable dressing. It has good promising outcome. At day 7, histologically the wounds treated with activated amnion were almost closed without scarring and showed well differentiated epidermis, proliferation of keratinocytes, hair follicles and basement membrane as compared to controls and silver nitrate gel dressings in a mouse (Mus musculus). Cryopreservation had no adverse effect on the mechanical properties of the amnion scaffold. Cryopreservation of decellularized amnion by Dulbecco's modified eagle medium (DMEM) was expected to prepare off-the-shelf skin substitutes and preserve them to be immediately available upon request of patients' needs.

Purification and characterization of an amidohydrolase for N4-long-chain fatty acyl derivatives of 1-beta-D-arabinofuranosylcytosine from mouse liver microsomes.

PubMed

Hori, K; Tsuruo, T; Tsukagoshi, S; Sakurai, Y

1984-03-01

N4-Long-chain fatty acyl-1-beta-D-arabinofuranosylcytosine amidohydrolase, a metabolizing enzyme for N4-acyl derivatives of 1-beta-D-arabinofuranosylcytosine with long-chain fatty acids, was purified from mouse liver microsomes. The purification was accomplished by solubilization of liver microsomes with Triton X-100, diethylaminoethyl cellulose chromatography, gel filtrations, hydroxyapatite chromatography, and concanavalin A:Sepharose chromatography. On sodium dodecyl sulfate:polyacrylamide gel electrophoresis, the purified enzyme preparation produced a single protein band with a molecular weight of 54,000. The enzyme had an optimal pH of 9.0, and the Michaelis constant for N4-palmitoyl-1-beta-D-arabinofuranosylcytosine was 67 microM. The thiols such as dithiothreitol or 2-mercaptoethanol stabilized the enzyme and stimulated its activity. p-Chloromercuribenzoate, N-ethylmaleimide, diisopropylfluorophosphate, and phenylmethylsulfonyl fluoride strongly inhibited the reaction. Bovine serum albumin markedly stimulated the enzyme activity, whereas detergents such as Triton X-100, deoxycholate, and sodium dodecyl sulfate had little effect. The enzyme did not require monovalent or divalent cations. Among the series of N4-acyl derivatives of 1-beta-D-arabinofuranosylcytosine with different chain lengths of acyl residues, the purified enzyme preferentially hydrolyzed the derivatives with long-chain fatty acids (C12 to C18), and N4-palmitoyl-1-beta-D-arabinofuranosylcytosine was the most susceptible. The purified enzyme was inactive on various N-acylamino acids, amides, oligopeptides, proteins, N-acylsphingosines (ceramides), triglyceride, lecithin, and lysolecithin. These results suggest that N4-long-chain fatty acyl-1-beta-D-arabinofuranosylcytosine amidohydrolase may be a new type of linear amidase.

Application of Fluorescence Emission for Characterization of Albendazole and Ricobendazole Micellar Systems: Elucidation of the Molecular Mechanism of Drug Solubilization Process.

PubMed

Priotti, Josefina; Leonardi, Darío; Pico, Guillermo; Lamas, María C

2018-04-01

Albendazole (ABZ) and ricobendazole (RBZ) are referred to as class II compounds in the Biopharmaceutical Classification System. These drugs exhibit poor solubility, which profoundly affects their oral bioavailability. Micellar systems are excellent pharmaceutical tools to enhance solubilization and absorption of poorly soluble compounds. Polysorbate 80 (P80), poloxamer 407 (P407), sodium cholate (Na-C), and sodium deoxycholate (Na-DC) have been selected as surfactants to study the solubilization process of these drugs. Fluorescence emission was applied in order to obtain surfactant/fluorophore (S/F) ratio, critical micellar concentration, protection efficiency of micelles, and thermodynamic parameters. Systems were characterized by their size and zeta potential. A blue shift from 350 to 345 nm was observed when ABZ was included in P80, Na-DC, and Na-C micelles, while RBZ showed a slight change in the fluorescence band. P80 showed a significant solubilization capacity: S/F values were 688 for ABZ at pH 4 and 656 for RBZ at pH 6. Additionally, P80 micellar systems presented the smallest size (10 nm) and their size was not affected by pH change. S/F ratio for bile salts was tenfold higher than for the other surfactants. Quenching plots were linear and their constant values (2.17/M for ABZ and 2.29/M for RBZ) decreased with the addition of the surfactants, indicating a protective effect of the micelles. Na-DC showed better protective efficacy for ABZ and RBZ than the other surfactants (constant values 0.54 and 1.57/M, respectively), showing the drug inclusion into the micelles. Entropic parameters were negative in agreement with micelle formation.

Alterations in melatonin and 5-HT signalling in the colonic mucosa of mice with dextran-sodium sulfate-induced colitis.

PubMed

MacEachern, Sarah J; Keenan, Catherine M; Papakonstantinou, Evangelia; Sharkey, Keith A; Patel, Bhavik Anil

2018-05-01

Inflammatory bowel disease (IBD) is characterized by pain, bleeding, cramping and altered gastrointestinal (GI) function. Changes in mucosal 5-HT (serotonin) signalling occur in animal models of colitis and in humans suffering from IBD. Melatonin is co-released with 5-HT from the mucosa and has a wide variety of actions in the GI tract. Here, we examined how melatonin signalling is affected by colitis and determined how this relates to 5-HT signalling. Using electroanalytical approaches, we investigated how 5-HT release, reuptake and availability as well as melatonin availability are altered in dextran sodium sulfate (DSS)-induced colitis in mice. Studies were conducted to explore if melatonin treatment during active colitis could reduce the severity of colitis. We observed an increase in 5-HT and a decrease in melatonin availability in DSS-induced colitis. A significant reduction in 5-HT reuptake was observed in DSS-induced colitis animals. A reduction in the content of 5-HT was observed, but no difference in tryptophan levels were observed. A reduction in deoxycholic acid-stimulated 5-HT availability and a significant reduction in mechanically-stimulated 5-HT and melatonin availability were observed in DSS-induced colitis. Orally or rectally administered melatonin once colitis was established did not significantly suppress inflammation. Our data suggest that DSS-induced colitis results in a reduction in melatonin availability and an increase in 5-HT availability, due to a reduction/loss of tryptophan hydroxylase 1 enzyme, 5-HT content and 5-HT transporters. Mechanosensory release was more susceptible to inflammation when compared with chemosensory release. © 2018 The British Pharmacological Society.

Physical compatibility of plazomicin with select i.v. drugs during simulated Y-site administration.

PubMed

Asempa, Tomefa E; Avery, Lindsay M; Kidd, James M; Kuti, Joseph L; Nicolau, David P

2018-06-12

The results of a study to determine the physical compatibility of plazomicin sulfate solution during simulated Y-site administration with 92 i.v. drugs are reported. Plazomicin injection solution (500 mg/10 mL) was diluted in 0.9% sodium chloride or 5% dextrose for injection to a final volume of 50 mL (final plazomicin concentration, 24 mg/mL), consistent with a 15-mg/kg dose administered to an 80-kg patient (i.e., 1,200 mg). All other i.v. drugs were reconstituted according to manufacturers' recommendations and diluted with 0.9% sodium chloride or 5% dextrose for injection to the upper range of concentrations used clinically. Y-site conditions were simulated by mixing 5 mL of plazomicin solution with 5 mL of tested drug solutions in a 1:1 ratio. Solutions were assessed for visual (via color and Tyndall beam testing), turbidity (using a laboratory-grade turbidimeter), and pH changes over a 60-minute observation period. Incompatibility was defined a priori as precipitation, color change, a positive Tyndall test, or a turbidity change of ≥0.5 nephelometric turbidity units at any time during the 60-minute observation period. Plazomicin was physically compatible with 79 of the 92 drugs tested. Determinations of physical incompatibility with plazomicin were made for 13 drugs: albumin, amiodarone, amphotericin B deoxycholate, anidulafungin, calcium chloride, daptomycin, esomeprazole, heparin, levofloxacin, methylprednisolone, micafungin, phenytoin, and propofol, CONCLUSION: Plazomicin at a concentration of 24 mg/mL was physically compatible with 85% of the drugs tested, including 31 of 36 antimicrobial agents. Copyright © 2018 by the American Society of Health-System Pharmacists, Inc. All rights reserved.

Effect of surface modifiers on an ectoenzyme: granulocyte 5'-nucleotidase.

PubMed

Smolen, J E; Karnovsky, M L

1980-05-01

Several agents that react with plasma membranes, namely the native lectins concanavalin A, Ricinus communis agglutinin, and wheat germ agglutinin, the modified lectin succinyl concanavalin A, and sodium meta-periodate, inhibited the ecto-5'-nucleotidase of intact guinea pig granulocytes. Stimulation of the enzyme was not observed at any lectin concentration. Inhibition by native lectins could be blocked or reversed by appropriate competing hapten sugars. In the case of concanavalin A, reversal could be achieved at 37 degrees C, but not at 5 degrees C. When lectins were used in combination with each other, the effects were found to be largely independent. However, when concanavalin A and R. communis agglutinin were applied together, complications arose because the former lectin binds to the latter as well as to the cell surface. To avoid some of the complexities inherent in studying intact cell 5'-nucleotidase and to gain additional information about the system, two broken cell enzyme preparations were also examined. The enzyme of plasma membrane-enriched fractions was inhibited by all five agents mentioned above. 5'-Nucleotidase solubilized in sodium deoxycholate was inhibited by the four lectins but stimulated by periodate. The effects of the surface modifiers on kinetic data for all three enzyme preparations are consistent with the hypothesis that direct interactions with the enzyme molecule give rise to changes in Vmax; interactions at membrane sites other than 5'-nucleotidase itself could cause increases in apparent Km values. Effects of interactions of ectoenzymes with plant lectins may serve as models for phenomena that result from cell-cell interactions or from interactions of animal cells with lectin-like components of the cellular environment.

The significance of GW-SW interactions for biogeochemical processes in sandy streambeds

NASA Astrophysics Data System (ADS)

Arnon, Shai; De Falco, Natalie; Fox, Aryeh; Laube, Gerrit; Schmidt, Christian; Fleckenstein, Jan; Boano, Fulvio

2015-04-01

Stream-groundwater interactions have a major impact on hyporheic exchange fluxes in sandy streambeds. However, the physical complexity of natural streams has limited our ability to study these types of interactions systematically, and to evaluate their importance to biogeochemical processes and nutrient cycling. In this work we were able to quantify the effect of losing and gaining fluxes on hyporheic exchange and nutrient cycling in homogeneous and heterogeneous streambeds by combining experiments in laboratory flumes and modeling. Tracer experiments for measuring hyporheic exchange were done using dyes and NaCl under various combinations of overlying water velocity and losing or gaining fluxes. Nutrient cycling experiments were conducted after growing a benthic biofilm by spiking with Sodium Benzoate (as a source of labile dissolved organic carbon, DOC) and measuring DOC and oxygen dynamics. The combination of experimental observations and modeling revealed that interfacial transport increases with the streambed hydraulic conductivity and proportional to the square of the overlying water velocity. Hyporheic exchange fluxes under losing and gaining flow conditions were similar, and became smaller when the losing or gaining flux increases. Increasing in streambed hydraulic conductivity led to higher hyporheic fluxes and reduction in the effects of losing and gaining flow conditions to constrain exchange. Despite the evident effect of flow conditions on hyporheic exchange, labile DOC uptake was positively linked to increasing overlying water velocity but was not affected by losing and gaining fluxes. This is because microbial aerobic activity was taking place at the upper few millimeters of the streambed as shown by local oxygen consumption rates, which was measured using microelectrodes. Based on modeling work, it is expected that GW-SW interaction will be more significant for less labile DOC and anaerobic processes. Our results enable us to study systematically the coupling between flow conditions and biogeochemical processes under highly controlled physical and chemical conditions and are expected to improve our understanding of nutrient cycling in streams.

Evaluation of Fuel-Borne Sodium Effects on a DOC-DPF-SCR Heavy-Duty Engine Emission Control System: Simulation of Full-Useful Life

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lance, Michael; Wereszczak, Andrew; Toops, Todd J.

2016-04-05

For renewable fuels to displace petroleum, they must be compatible with emissions control devices. Pure biodiesel contains up to 5 ppm Na + K and 5 ppm Ca + Mg metals, which have the potential to degrade diesel emissions control systems. This study aims to address these concerns, identify deactivation mechanisms, and determine if a lower limit is needed. Accelerated aging of a production exhaust system was conducted on an engine test stand over 1,001 hr using B20 doped with 14 ppm Na. During the study, oxides of nitrogen (NOx) emissions exceeded the engine certification limit of 0.33 g/bhp-hr beforemore » the 435,000-mile requirement. Replacing aged diesel oxidation catalyst (DOC), diesel particulate filter (DPF), and selective catalytic reduction (SCR) devices with new degreened parts showed that each device contributed equally to the NOx increase. Following this systems-based evaluation, a detailed investigation of the individual components was completed. Na was determined to have minimal impact on DOC activity. For this system, it is estimated that B20-Na resulted in 50% more ash into the DPF. However, the Na did not diffuse into the cordierite DPF nor degrade its mechanical properties. The SCR degradation was found to be caused by a small amount of precious group metals contamination that increased ammonia oxidation, and lowered NOx reduction. Therefore, it was determined that the primary effect of Na in this study is through increased ash in the DPF rather than deactivation of the catalytic activity.« less

Inhibitory effect of a new orally active cedrol-loaded nanostructured lipid carrier on compound 48/80-induced mast cell degranulation and anaphylactic shock in mice

PubMed Central

Chakraborty, Shreyasi; Kar, Nabanita; Kumari, Leena; De, Asit; Bera, Tanmoy

2017-01-01

Background Type I hypersensitivity is an allergic reaction characterized by the overactivity of the immune system provoked by normally harmless substances. Glucocorticoids, anti-histamines, or mast cell stabilizers are the choices of treatment for type I hypersensitivity. Even though these drugs have the anti-allergic effect, they can have several side effects in prolong use. Cedrol is the main bioactive compound of Cedrus atlantica with anti-tumor, anti-oxidative, and platelet-activating factor inhibiting properties. Methods In this study, the preparation and anti-anaphylactic effect of cedrol-loaded nanostructured lipid carriers (NLCs) were evaluated. NLCs were prepared using Compritol® 888 ATO and triolein as lipid phase and vitamin E d-α-tocopherylpolyethyleneglycol 1000 succinate, soya lecithin, and sodium deoxycholate as nanoparticle stabilizers. Results The average diameter of cedrol-NLCs (CR-NLCs) was 71.2 nm (NLC-C1) and 91.93 nm (NLC-C2). The particle had negative zeta potential values of −31.9 mV (NLC-C1) and −44.5 mV (NLC-C2). Type I anaphylactoid reaction in the animal model is significantly reduced by cedrol and cedrol-NLC. This in vivo activity of cedrol resulted that cedrol suppressed compound 48/80-induced peritoneal mast cell degranulation and histamine release from mast cells. Furthermore, compound 48/80-evoked Ca2+ uptake into mast cells was reduced in a dose-dependent manner by cedrol and cedrol-NLC. Studies confirmed that the inhibition of type I anaphylactoid response in vivo in mice and compound 48/80-induced mast cell activation in vitro are greatly enhanced by the loading of cedrol into the NLCs. The safety of cedrol and CR-NLC was evaluated as selectivity index (SI) with prednisolone and cromolyn sodium as positive control. SI of CR-NLC-C2 was found to be 11.5-fold greater than both prednisolone and cromolyn sodium. Conclusion Administration of CR-NLC 24 hours before the onset of anaphylaxis can prevent an anaphylactoid reaction. NLCs could be a promising vehicle for the oral delivery of cedrol to protect anaphylactic reactions. PMID:28744120

Inhibitory effect of a new orally active cedrol-loaded nanostructured lipid carrier on compound 48/80-induced mast cell degranulation and anaphylactic shock in mice.

PubMed

Chakraborty, Shreyasi; Kar, Nabanita; Kumari, Leena; De, Asit; Bera, Tanmoy

2017-01-01

Type I hypersensitivity is an allergic reaction characterized by the overactivity of the immune system provoked by normally harmless substances. Glucocorticoids, anti-histamines, or mast cell stabilizers are the choices of treatment for type I hypersensitivity. Even though these drugs have the anti-allergic effect, they can have several side effects in prolong use. Cedrol is the main bioactive compound of Cedrus atlantica with anti-tumor, anti-oxidative, and platelet-activating factor inhibiting properties. In this study, the preparation and anti-anaphylactic effect of cedrol-loaded nanostructured lipid carriers (NLCs) were evaluated. NLCs were prepared using Compritol ® 888 ATO and triolein as lipid phase and vitamin E d-α-tocopherylpolyethyleneglycol 1000 succinate, soya lecithin, and sodium deoxycholate as nanoparticle stabilizers. The average diameter of cedrol-NLCs (CR-NLCs) was 71.2 nm (NLC-C 1 ) and 91.93 nm (NLC-C 2 ). The particle had negative zeta potential values of -31.9 mV (NLC-C 1 ) and -44.5 mV (NLC-C 2 ). Type I anaphylactoid reaction in the animal model is significantly reduced by cedrol and cedrol-NLC. This in vivo activity of cedrol resulted that cedrol suppressed compound 48/80-induced peritoneal mast cell degranulation and histamine release from mast cells. Furthermore, compound 48/80-evoked Ca 2+ uptake into mast cells was reduced in a dose-dependent manner by cedrol and cedrol-NLC. Studies confirmed that the inhibition of type I anaphylactoid response in vivo in mice and compound 48/80-induced mast cell activation in vitro are greatly enhanced by the loading of cedrol into the NLCs. The safety of cedrol and CR-NLC was evaluated as selectivity index (SI) with prednisolone and cromolyn sodium as positive control. SI of CR-NLC-C 2 was found to be 11.5-fold greater than both prednisolone and cromolyn sodium. Administration of CR-NLC 24 hours before the onset of anaphylaxis can prevent an anaphylactoid reaction. NLCs could be a promising vehicle for the oral delivery of cedrol to protect anaphylactic reactions.

Ultraviolet light-responsive photorheological fluids: as a new class of smart fluids

NASA Astrophysics Data System (ADS)

Cho, Min-Young; Kim, Ji-Sik; Choi, Hyoung Jin; Choi, Seung-Bok; Kim, Gi-Woo

2017-05-01

We present a comprehensive introduction to the photorheological (PR) fluids whose rheological behavior can be changed by ultraviolet (UV) light with a wavelength of 365 nm. When the PR fluid was exposed to UV light, the viscosity of the fluid decreased, while the viscosity recovered to its initial value when UV light was turned off, indicating that the viscosity of these types of fluids can be reversible and tunable by UV light. Contrary to conventional smart fluids, such as electrorheological and magnetorheological fluids, PR fluid does not suffer from a phase splitting problem because it exists in a single-phase solution. Additionally, the PR fluid does not require any contact component, such as electrodes, and electric wires that are essential components for conventional smart fluids. In this work, the PR fluids were synthesized by doping lecithin/sodium deoxycholate reverse micelles with a photo-chromic spiropyran compound. It is demonstrated that the viscosity changes of PR fluids can be induced by UV light, and their rheological properties are examined in detail. In addition, an example of tailoring rheological properties using photoluminescence was introduced for improved response time. One of the potential applications, such as microfluidic flow control using the PR fluids, is also briefly presented.

Effect of soybean-lecithin as an enhancer of buccal mucosa absorption of insulin.

PubMed

Tian, Weiqun; Hu, Qiaolin; Xu, Ying; Xu, Yi

2012-01-01

Transmucosal delivery is a suitable route for insulin non-injection administration. In order to understand how insulin passes through mucosa with soybean-lecithin as an enhancing absorption. The penetration rate of insulin molecular through porcine buccal mucosa was investigated by measuring transbuccal fluxes in the Ussing Chambers. The imaging morphology of rabbits buccal mucosa was analyzed by using non-contact mode atomic force microscopy. The permeation rate can be increased by co-administration of soybean-lecithin. Untreated buccal mucosa showed relatively smooth surface characteristics, with many small crater-like pits and indentations spread over mucosa surfaces. Buccal mucosa that had been treated with 1.0% (w/v) sodium deoxycholic acid (pH 7.4) appeared to much more indentations characteristic, which treated with 2.5% (w/v) soybean-lecithin (pH 7.4) and 2.5% (w/v) Azone or laurocapram (pH 7.4) appeared rather different, the surface mucosa treated with soybean-lecithin emulsion showed a fine, rippling effect whereas those exposed to Azone display a more coarse, undulating surface feature. As a result of that Azone could damage the surface of the buccal mucosa, but soybean-lecithin could not. This study demonstrated that soybean-lecithin is a better and safer enhancer for insulin transmucosal delivery.

Role of edge activators and surface charge in developing ultradeformable vesicles with enhanced skin delivery.

PubMed

El Zaafarany, Ghada M; Awad, Gehanne A S; Holayel, Samar M; Mortada, Nahed D

2010-09-15

Transfersomes are highly efficient edge activator (EA)-based ultraflexible vesicles capable of, non-invasively, trespassing skin by virtue of their high, self-optimizing deformability. This investigation presents different approaches for the optimization of Transfersomes for enhanced transepidermal delivery of Diclofenac sodium (DS). Different methods of preparation, drug and lipid concentrations and vesicle compositions were employed, resulting in ultraflexible vesicles with diverse membrane characteristics. Evaluation of Transfersomes was implemented in terms of their shapes, sizes, entrapment efficiencies (EE%), relative deformabilities and in vitro skin permeation. Transfersomes prepared with 95:5% (w/w) (PC:EA) ratio showed highest EE% (Span 85>Span 80>Na cholate>Na deoxycholate>Tween 80). Whereas, those prepared using 85:15% (w/w) ratio showed highest deformability (Tween 80 was superior to bile salts and spans). Transfersomes were proved significantly superior in terms of, the amount of drug deposited in the skin and the amount permeated, with an enhancement ratio of 2.45, when compared to a marketed product. The study proved that the type and concentration of EA, as well as, the method of preparation had great influences on the properties of Transfersomes. Hence, optimized Transfersomes can significantly increase transepidermal flux and prolong the release of DS, when applied non-occlusively. Copyright 2010 Elsevier B.V. All rights reserved.

Lipid requirement of the membrane sodium-plus-potassium ion-dependent adenosine triphosphatase system.

PubMed Central

Wheeler, K P; Walker, J A; Barker, D M

1975-01-01

The dependence of the (Na-++K-+)-dependent ATPase (adenosine triphosphatase) (EC 3.6.1.3) on lipid has been examined in a number of different ways, with the use of various preparations from kidney tissue. The main findings were as follows. (1) The ATPase activities of the preparations examined were closely correlated with their total phospholipid content. (2) Extraction of the ATPase with deoxycholate or Lubrol W, combined with suitable salt-fractionation and washing procedures, removed phospholipid, cholesterol and enzymic activity in parallel; but activity was completely lost before all lipid had been removed. (3) The loss of activity could not be attributed to inhibition by residual detergent. (4) No selective removal of any particular phospholipid class by detergent could be detected. (5) Consistent reactivation of the Lubrol-extracted enzymes was obtained by adding dispersions of exogenous phospholipid, but only some, bearing a net negative charge, such as phosphatidylserine and phosphatidylglycerol, were effective. (6) The degree of reactivation was correlated with the amount of residual activity remaining after lipid depletion. (7) Partial purification of the ATPase, giving a 50-fold increase in specific activity, was not accompanied by selective enhancement of any particular class of phospholipid. We conclude that although the ATPase is dependent on phospholipid, only the reactivation results provide evidence for specificity. PMID:125082

Spectral studies on the interaction of pinacyanol chloride with binary surfactants in aqueous medium.

PubMed

Manna, Kausik; Panda, Amiya Kumar

2009-12-01

Interaction of pinacyanol chloride (PIN) with pure and binary mixtures of cetyltrimethylammonium bromide (CTAB) and sodium deoxycholate (NaDC) was spectroscopically studied. Interaction of PIN with pure NaDC produced a blue shifted metachromatic band (at approximately 502 nm), which gradually shifted to higher wavelength region as the concentration of NaDC increased in the pre-micellar stage. For CTAB only intensity of both the bands increased without any shift. Mixed surfactant systems behaved differently than the pure components. Absorbance of monomeric band with a slight red-shift, and a simultaneous decrease in the absorbance of dimeric band of PIN, were observed for all the combinations in the post-micellar region. PIN-micelle binding constant (K(b)) for pure as well as mixed was determined from spectral data using Benesi-Hildebrand equation. Using the idea of Regular Solution Theory, micellar aggregates were assumed to be predominant than other aggregated state, like vesicles. Aggregation number was determined by fluorescence quenching method. Spectral analyses were also done to evaluate CMC values. Rubinigh's model for Regular Solution Theory was employed to evaluate the interaction parameters and micellar composition. Strong synergistic interaction between the oppositely charged surfactants was noted. Bulkier nature of NaDC lowered down its access in mixed micellar system.

Shear rheology and in-vitro release kinetic study of apigenin from lyotropic liquid crystal.

PubMed

Fan, Jun; Liu, Feng; Wang, Zhongni

2016-01-30

Apigenin is a flavonoid compound with diverse pharmacological functions which could develop health benefit products, but its formulation is hampered by its poor water solubility and bioavailability. In this paper, in order to overcome these difficulties, apigenin was encapsulated in LLC formed by polyoxyethylene-10-oleyl ether (Brij 97) and sodium deoxycholate (NaDC) mixtures. The hexagonal liquid crystalline phase (H) and the cubic liquid crystalline phase (C) were found in this system. The shear rheology was used to study the structure change with temperature. It was shown that C3 (Brij 97-NaDC/IPM-PEG400/H2O=36:9:55) was C at low temperature. But above 35.6°C, the matrix of C3 completely transformed to polymer solution. The matrix of H3 was H (Brij 97-NaDC:IPM-PEG 400:H2O=50:9:41) below 50°C, but the structural strength change was obvious. Vitro release experiment was used to study drug release kinetics. It was indicated that apigenin encapsulated in LLC conformed to the concentration diffusion model, and cumulative percentage of apigenin released from C3 and H3 had corresponding relationship with the shear rheology at different temperatures. Copyright © 2015. Published by Elsevier B.V.

Application of Box-Behnken design for preparation of levofloxacin-loaded stearic acid solid lipid nanoparticles for ocular delivery: Optimization, in vitro release, ocular tolerance, and antibacterial activity.

PubMed

Baig, Mirza Salman; Ahad, Abdul; Aslam, Mohammed; Imam, Syed Sarim; Aqil, Mohd; Ali, Asgar

2016-04-01

The aim of the present study was to develop and optimize levofloxacin loaded solid lipid nanoparticles for the treatment of conjunctivitis. Box-Behnken experimental design was applied for optimization of solid lipid nanoparticles. The independent variables were stearic acid as lipid (X1), Tween 80 as surfactant (X2) and sodium deoxycholate as co-surfactant (X3) while particle size (Y1) and entrapment efficiency (Y2) were the dependent variables. Further in vitro release and antibacterial activity in vitro were also performed. The optimized formulation of levofloxacin provides particle size of 237.82 nm and showed 78.71% entrapment efficiency and achieved flux 0.2,493 μg/cm(2)/h across excised goat cornea. In vitro release study showed prolonged drug release from the optimized formulation following Korsmeyer-Peppas model. Antimicrobial study revealed that the developed formulation possesses antibacterial activity against Staphylococcus aureus, and Escherichia coli equivalent to marketed eye drops. HET-CAM test demonstrated that optimized formulation was found to be non-irritant and safe for topical ophthalmic use. Our results concluded that solid lipid nanoparticles are an efficient carrier for ocular delivery of levofloxacin and other drugs. Copyright © 2015 Elsevier B.V. All rights reserved.

Cauda equina-derived extracellular matrix for fabrication of nanostructured hybrid scaffolds applied to neural tissue engineering.

PubMed

Wen, Xiaoxiao; Wang, Yu; Guo, Zhiyuan; Meng, Haoye; Huang, Jingxiang; Zhang, Li; Zhao, Bin; Zhao, Qing; Zheng, Yudong; Peng, Jiang

2015-03-01

Extracellular matrix (ECM) components have become important candidate materials for use as neural scaffolds for neural tissue engineering. In the current study, we prepared cauda equina-derived ECM materials for the production of scaffolds. Natural porcine cauda equina was decellularized using Triton X-100 and sodium deoxycholate, shattered physically, and made into a suspension by differential centrifugation. The decellularization procedure resulted in the removal of >94% of the nuclear material and preserved the extracellular collagen and sulfated glycosaminoglycan. Immunofluorescent staining confirmed the presence of collagen type I, laminin, and fibronectin in the ECM. The cauda equine-derived ECM was blended with poly(l-lactide-co-glycolide) (PLGA) to fabricate nanostructured scaffolds using electrospinning. The incorporation of the ECM increased the hydrophilicity of the scaffolds. Fourier transform infrared spectroscopy and multiphoton-induced autofluorescence images showed the presence of the ECM in the scaffolds. ECM/PLGA scaffolds were beneficial for the survival of Schwann cells compared with scaffolds consisting of PLGA alone, and the aligned fibers could regulate cell morphologic features by modulating cellular orientation. Axons in the dorsal root ganglia explants extended to a greater extent along ECM/PLGA compared with PLGA-alone fibers. The cauda equina ECM might be a promising material for forming scaffolds for use in neural tissue engineering.

Proteins of Vasicular Stomatitis Virus

PubMed Central

Kang, C. Y.; Prevec, L.

1969-01-01

Infection of L cells with vesicular stomatitis virus results in the release, into the cell-free fluid, of four antigenic components separable by rate zonal centrifugation on sucrose gradients. The largest antigens are the infectious (B) particle and a shorter noninfectious, autointerfering (T) particle. The two small antigens are characterized by sedimentation coefficients of approximately 20S and 6S. Treatment of purified B or T particles with sodium deoxycholate results in the release from the particle of a nucleoprotein core which can be purified on sucrose gradient and which has a sedimentation coefficient characteristic of the virus from which it arose. Utilizing purified antigens labeled with 14C-amino acids during growth, we examined the protein constituents of each antigen by acrylamide-gel electrophoresis. The proteins of B and T particles are identical, each containing one minor (virus protein 1) and three major (virus proteins 2, 3, and 4) proteins, numbered in order of increasing mobility. Virus protein 3 originates from the nucleoprotein core, whereas proteins 2 and 4 come from the coat. The origin of virus protein 1 is not known. The 20S antigen contains a single protein equivalent to virus protein 3, whereas the 6S antigen shows a single protein which is similar to, but probably distinct from, virus protein 2. PMID:4306195

Amphotericin B formulations: a comparative review of efficacy and toxicity.

PubMed

Hamill, Richard J

2013-06-01

Because of the increasing prevalence and changing microbiological spectrum of invasive fungal infections, some form of amphotericin B still provides the most reliable and broad spectrum therapeutic alternative. However, the use of amphotericin B deoxycholate is accompanied by dose-limited toxicities, most importantly, infusion-related reactions and nephrotoxicity. In an attempt to improve the therapeutic index of amphotericin B, three lipid-associated formulations were developed, including amphotericin B lipid complex (ABLC), liposomal amphotericin B (L-AmB), and amphotericin B colloidal dispersion (ABCD). The lipid composition of all three of these preparations differs considerably and contributes to substantially different pharmacokinetic parameters. ABLC is the largest of the lipid preparations. Because of its size, it is taken up rapidly by macrophages and becomes sequestered in tissues of the mononuclear phagocyte system such as the liver and spleen. Consequently, compared with the conventional formulation, it has lower circulating amphotericin B serum concentrations, reflected in a marked increase in volume of distribution and clearance. Lung levels are considerably higher than those achieved with other lipid-associated preparations. The recommended therapeutic dose of ABLC is 5 mg/kg/day. Because of its small size and negative charge, L-AmB avoids substantial recognition and uptake by the mononuclear phagocyte system. Therefore, a single dose of L-AmB results in a much higher peak plasma level (Cmax) than conventional amphotericin B deoxycholate and a much larger area under the concentration-time curve. Tissue concentrations in patients receiving L-AmB tend to be highest in the liver and spleen and much lower in kidneys and lung. Recommended therapeutic dosages are 3-6 mg/kg/day. After intravenous infusion, ABCD complexes remain largely intact and are rapidly removed from the circulation by cells of the macrophage phagocyte system. On a milligram-to-milligram basis, the Cmax achieved is lower than that attained by conventional amphotericin B, although the larger doses of ABCD that are administered produce an absolute level that is similar to amphotericin B. ABCD exhibits dose-limiting, infusion-related toxicities; consequently, the administered dosages should not exceed 3-4 mg/kg/day. The few comparative clinical trials that have been completed with the lipid-associated formulations have not demonstrated important clinical differences among these agents and amphotericin B for efficacy, although there are significant safety benefits of the lipid products. Furthermore, only one published trial has ever compared one lipid product against another for any indication. The results of these trials are particularly difficult to interpret because of major heterogeneities in study design, disease definitions, drug dosages, differences in clinical and microbiological endpoints as well as specific outcomes examined. Nevertheless, it is possible to derive some general conclusions given the available data. The most commonly studied syndrome has been empiric therapy for febrile neutropenic patients, where the lipid-associated preparations did not appear to provide a survival benefit over conventional amphotericin B deoxycholate, but did offer a significant advantage for the prevention of various breakthrough invasive fungal infections. For treatment of documented invasive fungal infections that usually involved hematological malignancy patients, no individual randomized trial has demonstrated a mortality benefit due to therapy with one of the lipid formulations. Results from meta-analyses have been contradictory, with one demonstrating a mortality benefit from all-cause mortality and one that did not demonstrate a mortality benefit. In the only published study to examine HIV-infected patients with disseminated histoplasmosis, clinical success and mortality were significantly better with L-AmB compared with amphotericin B deoxycholate; there were no differences in microbiological outcomes between treatment groups. The lipid-associated preparations were not significantly better than amphotericin B deoxycholate for treatment of AIDS-associated acute cryptococcal meningitis for either clinical or microbiological outcomes that were studied. In all of the trials that specifically examined renal toxicity, the lipid-associated formulations were significantly less nephrotoxic than amphotericin B deoxycholate. Infusion-related reactions occurred less frequently with L-AmB when compared with amphotericin B deoxycholate; however, ABCD had equivalent or more frequent infusion-related reactions than conventional amphotericin B, and this resulted in the cessation of at least one clinical trial. At the present time, this particular lipid formulation is no longer commercially available. For the treatment of most invasive fungal infections, an amphotericin B lipid formulation provides a safer alternative than conventional amphotericin B, with at least equivalent efficacy. As the cost of therapy with these agents continues to decline, these drugs will likely maintain their important role in the antifungal drug armamentarium because of their efficacy and improved safety profile.

Soaping the NMDA receptor: Various types of detergents influence differently [(3)H]MK-801 binding to rat brain membranes.

PubMed

Berger, Michael L

2016-01-01

Membranes prepared from rat brain were treated with increasing concentrations of cationic, neutral, anionic and zwitterionic surfactants. Potent inactivation of [(3)H]MK-801 binding to NMDA receptors (NRs) was provided by the cation cetyl pyridinium (IC50 25 μM) and the neutral digitonin (IC50 37 μM). A 2 h incubation of rat brain membranes at 24°C with 100 μM of the neutral Triton X-100 resulted in about 50% reversible inhibition (without inactivation). Reversible inhibition was also effected by the anion deoxycholate (IC50 700 μM), and by the zwitterions N-lauryl sulfobetaine (12-SB(±), 400 μM) and CHAPS (1.5 mM), with inactivation at higher concentrations. Keeping the NR cation channel in the closed state significantly protected against inactivation by cations and by 12-SB(±), but not by the other detergents. Inactivation depended differentially on the amount of the membranes, on the duration of the treatment, and on the temperature. Varying the amount of membranes by a factor 8 yielded for cetyl trimethylammonium (16-NMe3(+)) IC50s of inactivation from 10 to 80 μM, while for deoxycholate the IC50 of inactivation was 1.2 mM for all tissue quantities. Some compounds inactivated within a few min (16-NMe3(+), digitonin, CHAPS), while inactivation by others took at least half an hour (Triton X-100, deoxycholate, 12-SB(±)). These last 3 ones also exhibited the steepest temperature dependence. Knowledge about the influence of various parameters is helpful in selecting appropriate conditions allowing the treatment of brain membranes with amphiphiles without risking irreversible inactivation. Copyright © 2015 Elsevier B.V. All rights reserved.

Steroid catechol degradation: disecoandrostane intermediates accumulated by Pseudomonas transposon mutant strains.

PubMed

Leppik, R A

1989-07-01

Eleven transposon mutant strains affected in bile acid catabolism were each found to form yellow, muconic-like intermediates from bile acids. To characterize these unstable intermediates, media from the growth of one of these mutants with deoxycholic acid was treated with ammonia, then the crude product was methylated with diazomethane. Four compounds were subsequently isolated; spectral evidence suggested that they were methyl 12 alpha-hydroxy-3-oxo-23,24-dinorchola-1,4-dien-22-oate, methyl 4-aza-12 beta-hydroxy-9(10)-secoandrosta-1,3,5-triene-9,17-dione-3-carboxyl ate, 4-aza-9 alpha, 12 beta-dihydroxy-9(10)-secoandrosta-1,3,5-trien-17-one-3- methyl carboxylate and 4 alpha-[3'-propionic acid]-5-amino-7 beta-hydroxy-7 alpha beta-methyl- 3a alpha, 4,7,7a-tetrahydro-1-indanone-delta-lactam. It is proposed that the mutants are blocked in the utilization of such muconic-like compounds as the 3,12 beta-dihydroxy-5,9,17-trioxo-4(5),9(10)- disecoandrostal (10),2-dien-4-oic acid formed from deoxycholic acid. A further mutant was examined, which converted deoxycholic acid to 12 alpha-hydroxyandrosta-1,4-dien-3,17-dione, but accumulated yellow products from steroids which lacked a 12 alpha-hydroxy function, such as chenodeoxycholic acid. The products from the latter acid were treated as above; spectral evidence suggested that the two compounds isolated were methyl 4-aza-7-hydroxy-9(10)-secoandrosta-1,3,5- triene-9,17-dione-3-carboxylate and 4 alpha-[1'alpha-hydroxy-3'-propionic acid]-5-amino-7a beta-methyl-3a alpha,4,7,7a-tetrahydro-1-indanone-delta-lactam.

Bile acids deoxycholic acid and ursodeoxycholic acid differentially regulate human β-defensin-1 and -2 secretion by colonic epithelial cells.

PubMed

Lajczak, Natalia K; Saint-Criq, Vinciane; O'Dwyer, Aoife M; Perino, Alessia; Adorini, Luciano; Schoonjans, Kristina; Keely, Stephen J

2017-09-01

Bile acids and epithelial-derived human β-defensins (HβDs) are known to be important factors in the regulation of colonic mucosal barrier function and inflammation. We hypothesized that bile acids regulate colonic HβD expression and aimed to test this by investigating the effects of deoxycholic acid (DCA) and ursodeoxycholic acid on the expression and release of HβD1 and HβD2 from colonic epithelial cells and mucosal tissues. DCA (10-150 µM) stimulated the release of both HβD1 and HβD2 from epithelial cell monolayers and human colonic mucosal tissue in vitro In contrast, ursodeoxycholic acid (50-200 µM) inhibited both basal and DCA-induced defensin release. Effects of DCA were mimicked by the Takeda GPCR 5 agonist, INT-777 (50 μM), but not by the farnesoid X receptor agonist, GW4064 (10 μM). INT-777 also stimulated colonic HβD1 and HβD2 release from wild-type, but not Takeda GPCR 5 -/- , mice. DCA stimulated phosphorylation of the p65 subunit of NF-κB, an effect that was attenuated by ursodeoxycholic acid, whereas an NF-κB inhibitor, BMS-345541 (25 μM), inhibited DCA-induced HβD2, but not HβD1, release. We conclude that bile acids can differentially regulate colonic epithelial HβD expression and secretion and discuss the implications of our findings for intestinal health and disease.-Lajczak, N. K., Saint-Criq, V., O'Dwyer, A. M., Perino, A., Adorini, L., Schoonjans, K., Keely, S. J. Bile acids deoxycholic acid and ursodeoxycholic acid differentially regulate human β-defensin-1 and -2 secretion by colonic epithelial cells. © FASEB.

Taurocholic acid metabolism by gut microbes and colon cancer

PubMed Central

Ridlon, Jason M.; Wolf, Patricia G.; Gaskins, H. Rex

2016-01-01

ABSTRACT Colorectal cancer (CRC) is one of the most frequent causes of cancer death worldwide and is associated with adoption of a diet high in animal protein and saturated fat. Saturated fat induces increased bile secretion into the intestine. Increased bile secretion selects for populations of gut microbes capable of altering the bile acid pool, generating tumor-promoting secondary bile acids such as deoxycholic acid and lithocholic acid. Epidemiological evidence suggests CRC is associated with increased levels of DCA in serum, bile, and stool. Mechanisms by which secondary bile acids promote CRC are explored. Furthermore, in humans bile acid conjugation can vary by diet. Vegetarian diets favor glycine conjugation while diets high in animal protein favor taurine conjugation. Metabolism of taurine conjugated bile acids by gut microbes generates hydrogen sulfide, a genotoxic compound. Thus, taurocholic acid has the potential to stimulate intestinal bacteria capable of converting taurine and cholic acid to hydrogen sulfide and deoxycholic acid, a genotoxin and tumor-promoter, respectively. PMID:27003186

Differential regulation of EGFR-MAPK signaling by deoxycholic acid (DCA) and ursodeoxycholic acid (UDCA) in colon cancer.

PubMed

Centuori, Sara M; Martinez, Jesse D

2014-10-01

A high-fat diet coincides with increased levels of bile acids. This increase in bile acids, particularly deoxycholic acid (DCA), has been strongly associated with the development of colon cancer. Conversely, ursodeoxycholic acid (UDCA) may have chemopreventive properties. Although structurally similar, DCA and UDCA present different biological and pathological effects in colon cancer progression. The differential regulation of cancer by these two bile acids is not yet fully understood. However, one possible explanation for their diverging effects is their ability to differentially regulate signaling pathways involved in the multistep progression of colon cancer, such as the epidermal growth factor receptor (EGFR)-mitogen-activated protein kinase (MAPK) pathway. This review will examine the biological effects of DCA and UDCA on colon cancer development, as well as the diverging effects of these bile acids on the oncogenic signaling pathways that play a role in colon cancer development, with a particular emphasis on bile acid regulation of the EGFR-MAPK pathway.

Differential regulation of EGFR-MAPK signaling by deoxycholic acid (DCA) and ursodeoxycholic acid (UDCA) in colon cancer

PubMed Central

Centuori, Sara M.; Martinez, Jesse D.

2014-01-01

A high fat diet coincides with elevated levels of bile acids. This elevation of bile acids, particularly deoxycholic acid (DCA), has been strongly associated with the development of colon cancer. Conversely, ursodeoxycholic acid (UDCA) may have chemopreventive properties. Although structurally similar, DCA and UDCA present different biological and pathological effects in colon cancer progression. The differential regulation of cancer by these two bile acids is not yet fully understood. However, one possible explanation for their diverging effects is their ability to differentially regulate signaling pathways involved in the multistep progression of colon cancer, such as the epidermal growth factor receptor (EGFR) mitogen-activated protein kinase (MAPK) pathway. This review will examine the biological effects of DCA and UDCA on colon cancer development, as well as the diverging effects of these bile acids on the oncogenic signaling pathways that play a role in colon cancer development, with a particular emphasis on bile acid regulation of the EGFR-MAPK pathway. PMID:25027205

Evaluation of fuel-borne sodium effects on a DOC-DPF-SCR heavy-duty engine emission control system: Simulation of full-useful life

DOE PAGES

Lance, Michael J.; Wereszczak, Andrew A; Toops, Todd J.; ...

2016-10-17

Here we report that for renewable fuels to displace petroleum, they must be compatible with emissions control devices. Pure biodiesel contains up to 5 ppm Na + K and 5 ppm Ca + Mg metals, which have the potential to degrade diesel emissions control systems. This study aims to address these concerns, identify deactivation mechanisms, and determine if a lower limit is needed. Accelerated aging of a production exhaust system was conducted on an engine test stand over 1001 h using 20% biodiesel blended into ultra-low sulfur diesel (B20) doped with 14 ppm Na. This Na level is equivalent tomore » exposure to Na at the uppermost expected B100 value in a B20 blend for the system full-useful life. During the study, NOx emissions exceeded the engine certification limit of 0.33 g/bhp-hr before the 435,000-mile requirement. Replacing aged diesel oxidation catalyst (DOC), diesel particulate filter (DPF), and selective catalytic reduction (SCR) devices with new degreened parts showed that each device contributed equally to the NOx increase. Following this systems-based evaluation, a detailed investigation of the individual components was completed. Na was determined to have minimal impact on DOC activity. For this system, it is estimated that B20-Na resulted in 50% more ash into the DPF. However, the Na did not diffuse into the cordierite DPF nor degrade its mechanical properties. The SCR degradation was found to be caused by a small amount of precious group metals (PGM) contamination that increased NH3 oxidation, and lowered NOx reduction. Therefore, we determined that the primary effect of Na in this study is through increased ash in the DPF rather than deactivation of the catalytic activity.« less

Influence of organic carbon loading, sediment associated metal oxide content and sediment grain size distributions upon Cryptosporidium parvum removal during riverbank filtration operations, Sonoma County, CA.

PubMed

Metge, D W; Harvey, R W; Aiken, G R; Anders, R; Lincoln, G; Jasperse, J

2010-02-01

This study assessed the efficacy for removing Cryptosporidium parvum oocysts of poorly sorted, Fe- and Al-rich, subsurface sediments collected from 0.9 to 4.9 and 1.7-13.9 m below land surface at an operating riverbank filtration (RBF) site (Russian River, Sonoma County, CA). Both formaldehyde-killed oocysts and oocyst-sized (3 microm) microspheres were employed in sediment-packed flow-through and static columns. The degree of surface coverage of metal oxides on sediment grain surfaces correlated strongly with the degrees of oocyst and microsphere removals. In contrast, average grain size (D(50)) was not a good indicator of either microsphere or oocyst removal, suggesting that the primary mechanism of immobilization within these sediments is sorptive filtration rather than physical straining. A low specific UV absorbance (SUVA) for organic matter isolated from the Russian River, suggested that the modest concentration of the SUVA component (0.8 mg L(-1)) of the 2.2 mg L(-1) dissolved organic carbon (DOC) is relatively unreactive. Nevertheless, an amendment of 2.2 mg L(-1) of isolated river DOC to column sediments resulted in up to a 35.7% decrease in sorption of oocysts and (or) oocyst-sized microspheres. Amendments (3.2 microM) of the anionic surfactant, sodium dodecyl benzene sulfonate (SDBS) also caused substantive decreases (up to 31.9 times) in colloid filtration. Although the grain-surface metal oxides were found to have a high colloid-removal capacity, our study suggested that any major changes within the watershed that would result in long-term alterations in either the quantity and (or) the character of the river's DOC could alter the effectiveness of pathogen removal during RBF operations. Published by Elsevier Ltd.

Evaluation of fuel-borne sodium effects on a DOC-DPF-SCR heavy-duty engine emission control system: Simulation of full-useful life

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lance, Michael J.; Wereszczak, Andrew A; Toops, Todd J.

Here we report that for renewable fuels to displace petroleum, they must be compatible with emissions control devices. Pure biodiesel contains up to 5 ppm Na + K and 5 ppm Ca + Mg metals, which have the potential to degrade diesel emissions control systems. This study aims to address these concerns, identify deactivation mechanisms, and determine if a lower limit is needed. Accelerated aging of a production exhaust system was conducted on an engine test stand over 1001 h using 20% biodiesel blended into ultra-low sulfur diesel (B20) doped with 14 ppm Na. This Na level is equivalent tomore » exposure to Na at the uppermost expected B100 value in a B20 blend for the system full-useful life. During the study, NOx emissions exceeded the engine certification limit of 0.33 g/bhp-hr before the 435,000-mile requirement. Replacing aged diesel oxidation catalyst (DOC), diesel particulate filter (DPF), and selective catalytic reduction (SCR) devices with new degreened parts showed that each device contributed equally to the NOx increase. Following this systems-based evaluation, a detailed investigation of the individual components was completed. Na was determined to have minimal impact on DOC activity. For this system, it is estimated that B20-Na resulted in 50% more ash into the DPF. However, the Na did not diffuse into the cordierite DPF nor degrade its mechanical properties. The SCR degradation was found to be caused by a small amount of precious group metals (PGM) contamination that increased NH3 oxidation, and lowered NOx reduction. Therefore, we determined that the primary effect of Na in this study is through increased ash in the DPF rather than deactivation of the catalytic activity.« less

The N-terminus of IpaB provides a potential anchor to the Shigella type III secretion system tip complex protein IpaD

PubMed Central

Dickenson, Nicholas E.; Arizmendi, Olivia; Patil, Mrinalini K.; Toth, Ronald T.; Middaugh, C. Russell; Picking, William D.; Picking, Wendy L.

2014-01-01

The type III secretion system (T3SS) is an essential virulence factor for Shigella flexneri, providing a conduit through which host-altering effectors are injected directly into a host cell to promote uptake. The type III secretion apparatus (T3SA) is comprised of a basal body, external needle, and regulatory tip complex. The nascent needle is a polymer of MxiH capped by a pentamer of invasion plasmid antigen D (IpaD). Exposure to bile salts (e.g. deoxycholate) causes a conformational change in IpaD and promotes recruitment of IpaB to the needle tip. It has been proposed that IpaB senses contact with host cell membranes, recruiting IpaC and inducing full secretion of T3SS effectors. While the steps of T3SA maturation and their external triggers have been identified, details of specific protein interactions and mechanisms have remained difficult to study due to the hydrophobic nature of the IpaB and IpaC translocator proteins. Here we explored the ability for a series of soluble N-terminal IpaB peptides to interact with IpaD. We found that DOC is required for the interaction and that a region of IpaB between residues 11–27 is required for maximum binding, which was confirmed in vivo. Furthermore, intramolecular FRET measurements indicated that movement of the IpaD distal domain away from the protein core accompanied the binding of IpaB11-226. Together these new findings provide important new insight into the interactions and potential mechanisms that define the maturation of the Shigella T3SA needle tip complex and provide a foundation for further studies probing T3SS activation. PMID:24236510

Changes in the character of DOC in streams during storms in two Midwestern watersheds with contrasting land uses

USGS Publications Warehouse

Vidon, P.; Wagner, L.E.; Soyeux, E.

2008-01-01

Dissolved organic carbon (DOC) dynamics in streams is important, yet few studies focus on DOC dynamics in Midwestern streams during storms. In this study, stream DOC dynamics during storms in two Midwestern watersheds with contrasting land uses, the change in character of stream DOC during storms, and the usability of DOC as a hydrologic tracer in artificially drained landscapes of the Midwest are investigated. Major cation/DOC concentrations, and DOC specific UV absorbance (SUVA) and fluorescence index (FI) were monitored at 2-4 h intervals during three spring storms. Although DOC is less aromatic in the mixed land use watershed than in the agricultural watershed, land use has little impact on stream DOC concentration during storms. For both watersheds, DOC concentration follows discharge, and SUVA and FI values indicate an increase in stream DOC aromaticity and lignin content during storms. The comparison of DOC/major cation flushing dynamics indicates that DOC is mainly exported via overland flow/macropore flow. In both watersheds, the increase in DOC concentration in the streams during storms corresponds to a shift in the source of DOC from DOC originating from mineral soil layers of the soil profile at baseflow, to DOC originating from surficial soil layers richer in aromatic substances and lignin during storms. Results also suggest that DOC, SUVA and FI could be used as hydrologic tracers in artificially drained landscapes of the Midwest. These results underscore the importance of sampling streams for DOC during high flow periods in order to understand the fate of DOC in streams. ?? 2008 Springer Science+Business Media B.V.

Bile Acid Responses in Methane and Non-Methane Producers to Standard Breakfast Meals

USDA-ARS?s Scientific Manuscript database

Bile acids and their conjugates are important regulators of glucose homeostasis. Previous research has revealed the ratio of cholic acid to deoxycholic acid to affect insulin resistance in humans. Bile acid de-conjugation and intestinal metabolism depend on gut microbes which may be affected by hos...

Constraining the sources and cycling of dissolved organic carbon in a large oligotrophic lake using radiocarbon analyses

NASA Astrophysics Data System (ADS)

Zigah, Prosper K.; Minor, Elizabeth C.; McNichol, Ann P.; Xu, Li; Werne, Josef P.

2017-07-01

We measured the concentrations and isotopic compositions of solid phase extracted (SPE) dissolved organic carbon (DOC) and high molecular weight (HMW) DOC and their constituent organic components in order to better constrain the sources and cycling of DOC in a large oligotrophic lacustrine system (Lake Superior, North America). SPE DOC constituted a significant proportion (41-71%) of the lake DOC relative to HMW DOC (10-13%). Substantial contribution of 14C-depleted components to both SPE DOC (Δ14C = 25-43‰) and HMW DOC (Δ14C = 22-32‰) was evident during spring mixing, and depressed their radiocarbon values relative to the lake dissolved inorganic carbon (DIC; Δ14C ∼ 59‰). There was preferential removal of 14C-depleted (older) and thermally recalcitrant components from HMW DOC and SPE DOC in the summer. Contemporary photoautotrophic addition to HMW DOC was observed during summer stratification in contrast to SPE DOC, which decreased in concentration during stratification. Serial thermal oxidation radiocarbon analysis revealed a diversity of sources (both contemporary and older) within the SPE DOC, and also showed distinct components within the HMW DOC. The thermally labile components of HMW DOC were 14C-enriched and are attributed to heteropolysaccharides (HPS), peptides/amide and amino sugars (AMS) relative to the thermally recalcitrant components reflecting the presence of older material, perhaps carboxylic-rich alicyclic molecules (CRAM). The solvent extractable lipid-like fraction of HMW DOC was very 14C-depleted (as old as 1270-2320 14C years) relative to the carbohydrate-like and protein-like substances isolated by acid hydrolysis of HMW DOC. Our data constrain relative influences of contemporary DOC and old DOC, and DOC cycling in a modern freshwater ecosystem.

Development of a selective agar plate for the detection of Campylobacter spp. in fresh produce.

PubMed

Yoo, Jin-Hee; Choi, Na-Young; Bae, Young-Min; Lee, Jung-Su; Lee, Sun-Young

2014-10-17

This study was conducted to develop a selective medium for the detection of Campylobacter spp. in fresh produce. Campylobacter spp. (n=4), non-Campylobacter (showing positive results on Campylobacter selective agar) strains (n=49) isolated from fresh produce, indicator bacteria (n=13), and spoilage bacteria isolated from fresh produce (n=15) were plated on four Campylobacter selective media. Bolton agar and modified charcoal cefoperazone deoxycholate agar (mCCDA) exhibited higher sensitivity for Campylobacter spp. than did Preston agar and Hunt agar, although certain non-Campylobacter strains isolated from fresh produce by using a selective agar isolation method, were still able to grow on Bolton agar and mCCDA. To inhibit the growth of non-Campylobacter strains, Bolton agar and mCCDA were supplemented with 5 antibiotics (rifampicin, polymyxin B, sodium metabisulfite, sodium pyruvate, ferrous sulfate) and the growth of Campylobacter spp. (n=7) and non-Campylobacter strains (n=44) was evaluated. Although Bolton agar supplemented with rifampicin (BR agar) exhibited a higher selectivity for Campylobacter spp. than did mCCDA supplemented with antibiotics, certain non-Campylobacter strains were still able to grow on BR agar (18.8%). When BR agar with various concentrations of sulfamethoxazole-trimethoprim were tested with Campylobacter spp. (n=8) and non-Campylobacter (n=7), sulfamethoxazole-trimethoprim was inhibitory against 3 of 7 non-Campylobacter strains. Finally, we validated the use of BR agar containing 50mg/L sulfamethoxazole (BRS agar) or 0.5mg/L ciprofloxacin (BRCS agar) and other selective agars for the detection of Campylobacter spp. in chicken and fresh produce. All chicken samples were positive for Campylobacter spp. when tested on mCCDA, BR agar, and BRS agar. In fresh produce samples, BRS agar exhibited the highest selectivity for Campylobacter spp., demonstrating its suitability for the detection of Campylobacter spp. in fresh produce. Copyright © 2014 Elsevier B.V. All rights reserved.

Backbone dynamics of a model membrane protein: assignment of the carbonyl carbon /sup 13/C NMR resonances in detergent-solubilized M13 coat protein

DOE Office of Scientific and Technical Information (OSTI.GOV)

Henry, G.D.; Weiner, J.H.; Sykes, B.D.

The major coat protein of the filamentous bacteriophage M13 is a 50-residue amphiphilic polypeptide which is inserted, as an integral membrane-spanning protein, in the inner membrane of the Escherichia coli host during infection. /sup 13/C was incorporated biosynthetically into a total of 23 of the peptide carbonyls using labeled amino acids (alanine, glycine, lysine, phenylalanine, and proline). The structure and dynamics of carbonyl-labeled M13 coat protein were monitored by /sup 13/C nuclear magnetic resonance (NMR) spectroscopy. Assignment of many resonances was achieved by using protease digestion, pH titration, or labeling of the peptide bond with both /sup 13/C and /supmore » 15/N. The carbonyl region of the natural-abundance /sup 13/C NMR spectrum of M13 coat protein in sodium dodecyl sulfate solution shows approximately eight backbone carbonyl resonances with line widths much narrower than the rest. Three of these more mobile residues correspond to assigned peaks (glycine-3, lysine-48, and alanine-49) in the individual amino acid spectra, and another almost certainly arises from glutamic acid-2. A ninth residue, alanine-1, also gives rise to a very narrow carbonyl resonance if the pH is well above or below the pK/sub a/ of the terminal amino group. These data suggest that only about four residues at either end of the protein experience large-amplitude spatial fluctuations; the rest of the molecule is essentially rigid on the time scale of the overall rotational tumbling of the protein-detergent complex. The relative exposure of different regions of detergent-bound protein was monitored by limited digestion with proteinase K. Comparable spectra and digestion patterns were obtained when the protein was solubilized in sodium deoxycholate, suggesting that the coat protein binds both amphiphiles in a similar fashion.« less

Inkjet Printing of Proteins: an Experimental Approach.

PubMed

Montenegro-Nicolini, Miguel; Miranda, Víctor; Morales, Javier O

2017-01-01

Peptides and proteins represent a promissory group of molecules used by the pharmaceutical industry for drug therapy with great potential for development. However, the administration of these molecules presents a series of difficulties, making necessary the exploration of new alternatives like the buccal route of administration to improve drug therapy compliance. Although drop-on demand printers have been explored for small molecule drugs with promising results, the development of delivery systems for peptides and proteins through inkjet printing has seen little development. Therefore, the aim of this study was to assess the feasibility of using a thermal inkjet printing system for dispensing lysozyme and ribonuclease-A as model proteins. To address the absorption limitations of a potential buccal use, a permeation enhancer (sodium deoxycholate) was also studied in formulations. We found that a conventional printer successfully printed both proteins, exhibiting very high printing efficiency. Furthermore, the protein structure was not affected and minor effects were observed in the enzymatic activity after the printing process. In conclusion, we provide evidence for the usage of an inexpensive, easy to use, reliable, and reproducible thermal inkjet printing system to dispense proteins solutions for potential buccal application. Our research significantly contributes to present an alternative for manufacturing biologics delivery systems, with emphasis in buccal applications. Next steps of developments will be aimed at the use of new materials for printing, controlled release, and protection strategies for proteins and peptides.

Optimising the decellularization of human elastic cartilage with trypsin for future use in ear reconstruction.

PubMed

Rahman, Shafiq; Griffin, Michelle; Naik, Anish; Szarko, Matthew; Butler, Peter E M

2018-02-15

Decellularized scaffolds can induce chondrogenic differentiation of stem cells. This study compares different methods to optimise the decellularization of auricular cartilage. The process consisted of an initial 12 hour dry freeze thaw which froze the cartilage specimens in an empty tube at -20 °C. Samples were allowed to thaw at room temperature followed by submersion in phosphate buffer solution in which they were frozen at -20 °C for a 12 hour period. They were then allowed to thaw at room temperature as before. Protocol A subsequently involved subjecting specimens to both deoxyribonuclease and sodium deoxycholate. Protocol B and C were adaptations of this using 0.25% trypsin (7 cycles) and a 0.5 molar solution of ethylenediaminetetraacetic acid (3 hours for each cycle) respectively as additional steps. Trypsin accelerated the decellularization process with a reduction in DNA content from 55.4 ng/μL (native) to 17.3 ng/μL (P-value < 0.05) after 14 days. Protocol B showed a faster reduction in DNA content when compared with protocol A. In comparison to protocol C after 14 days, trypsin also showed greater decellularization with a mean difference of 11.7 ng/μL (P-value < 0.05). Histological analysis with H&E and DAPI confirmed depletion of cells at 14 days with trypsin.

Lecithin in mixed micelles attenuates the cytotoxicity of bile salts in Caco-2 cells.

PubMed

Tan, Ya'nan; Qi, Jianping; Lu, Yi; Hu, Fuqiang; Yin, Zongning; Wu, Wei

2013-03-01

This study was designed to investigate the cytotoxicity of bile salt-lecithin mixed micelles on the Caco-2 cell model. Cell viability and proliferation after mixed micelles treatments were evaluated with the MTT assay, and the integrity of Caco-2 cell monolayer was determined by quantitating the transepithelial electrical resistance and the flux of tracer, FITC-dextran 4400. The apoptosis induced by mixed micelles treatments was investigated with the annexin V/PI protocol. The particle size of mixed micelles was all smaller than 100 nm. The mixed micelles with lower than 0.2mM sodium deoxycholate (SDC) had no significant effects on cell viability and proliferation. When the level of SDC was higher than 0.4mM and the lecithin/SDC ratio was lower than 2:1, the mixed micelles caused significant changes in cell viability and proliferation. Furthermore, the mixed micelles affected tight junctions in a composition-dependent manner. Specifically, the tight junctions were transiently opened rather than damaged by the mixed micelles with SDC of between 0.2 and 0.6mM. The mixed micelles with more lecithin also induced less apoptosis. These results demonstrate that relatively higher concentrations of mixed micelles are toxic to Caco-2 cells, while phospholipids can attenuate the toxicity of the bile salts. Crown Copyright © 2012. Published by Elsevier Ltd. All rights reserved.

The efficacy and safety of bufadienolides-loaded nanostructured lipid carriers.

PubMed

Li, Fang; Weng, Yan; Wang, Lihui; He, Haibing; Yang, Jingyu; Tang, Xing

2010-06-30

Bufadienolides-loaded nanostructured lipid carriers (BU-NLC) were prepared for parenteral application using glyceryl monostearate as solid core, medium-chain triglyceride and oleic acid as liquid lipid material, and Lipoid E-80, sodium deoxycholate and pluronic F68 as stabilizers. In this study, the in vitro cytotoxicity, pharmacokinetics, biodistribution, antitumor efficacy and safety of BU-NLC were evaluated. Against human astrocytoma cell line (U87-MG) and human gastric carcinoma cell line (HGC-27) BU-NLC exhibited cytotoxicity that was similar to that of the free drug, and superior to that of the commercially available fluorouracil injection. BU-NLC exhibited a linear pharmacokinetic behavior at doses ranging from 0.25 to 1.0 mg/kg. The improved pharmacokinetic profile of bufadienolides when formulated in BU-NLC resulted in a higher plasma concentration and lower clearance after intravenous administration compared with bufadienolides solution (BU-S). A biodistribution study indicated that bufadienolides were mainly distributed in the lung, spleen, brain and kidney, and the longest retention was observed in the brain. A sarcoma-180 tumor model further confirmed the advantages of BU-NLC versus BU-S. Hemolysis and acute toxicity investigations showed that BU-NLC was safe when given by intravenous injection with reduced toxicity. In conclusion, the NLC system is a promising approach for the intravenous delivery of bufadienolides. 2010 Elsevier B.V. All rights reserved.

Preparation, characterization, pharmacokinetics and tissue distribution of solid lipid nanoparticles loaded with tetrandrine.

PubMed

Li, Su; Ji, Zhaoshuai; Zou, Meijuan; Nie, Xin; Shi, Yijie; Cheng, Gang

2011-09-01

Tetrandrine (TET) is a poorly water-soluble bisbenzylisoquinoline alkaloid. In this study, TET solid lipid nanoparticles (SLNs) were prepared by a melt-emulsification and ultrasonication technique. Precirol(®) ATO 5, glyceryl monostearate, and stearic acid were used as the lipid matrix for the SLNs, while Lipoid E80, Pluronic F68, and sodium deoxycholate were used as emulsifying and stabilizing agents. The physicochemical characteristics of the TET-SLNs were investigated when it was found that the mean particle size and zeta potential of the TET-SLNs were 134 ± 1.3 nm and -53.8 ± 1.7 mV, respectively, and the entrapment efficiency (EE) was 89.57% ± 0.39%. Differential scanning calorimetry indicated that TET was in an amorphous state in SLNs. TET-SLNs exhibited a higher release rate at a lower pH and a lower release rate at a higher pH. The release pattern of the TET-SLNs followed the Weibull model. The pharmacokinetics of TET-SLNs after intravenous administration to male rats was studied. TET-SLN resulted in a higher plasma concentration and lower clearance. The biodistribution study indicated that TET-SLN showed a high uptake in reticuloendothelial system organs. In conclusion, TET-SLNs with a small particle size, and high EE, can be produced by the method described in this study. The SLN system is a promising approach for the intravenous delivery of tetrandrine.

Enhanced Solubility and Dissolution Rate of Lacidipine Nanosuspension: Formulation Via Antisolvent Sonoprecipitation Technique and Optimization Using Box-Behnken Design.

PubMed

Kassem, Mohamed A A; ElMeshad, Aliaa N; Fares, Ahmed R

2017-05-01

Lacidipine (LCDP) is a highly lipophilic calcium channel blocker of poor aqueous solubility leading to poor oral absorption. This study aims to prepare and optimize LCDP nanosuspensions using antisolvent sonoprecipitation technique to enhance the solubility and dissolution of LCDP. A three-factor, three-level Box-Behnken design was employed to optimize the formulation variables to obtain LCDP nanosuspension of small and uniform particle size. Formulation variables were as follows: stabilizer to drug ratio (A), sodium deoxycholate percentage (B), and sonication time (C). LCDP nanosuspensions were assessed for particle size, zeta potential, and polydispersity index. The formula with the highest desirability (0.969) was chosen as the optimized formula. The values of the formulation variables (A, B, and C) in the optimized nanosuspension were 1.5, 100%, and 8 min, respectively. Optimal LCDP nanosuspension had particle size (PS) of 273.21 nm, zeta potential (ZP) of -32.68 mV and polydispersity index (PDI) of 0.098. LCDP nanosuspension was characterized using x-ray powder diffraction, differential scanning calorimetry, and transmission electron microscopy. LCDP nanosuspension showed saturation solubility 70 times that of raw LCDP in addition to significantly enhanced dissolution rate due to particle size reduction and decreased crystallinity. These results suggest that the optimized LCDP nanosuspension could be promising to improve oral absorption of LCDP.

How appetizing is the dissolved organic matter (DOM) trees lose during rainfall?

NASA Astrophysics Data System (ADS)

Howard, D.; Van Stan, J. T., II; Whitetree, A.; Zhu, L.; Stubbins, A.

2017-12-01

Dissolved organic carbon (DOC) is the chemical backbone of dissolved organic matter (DOM), which is important because it drives many processes in soils and waterways. Current DOC work has paid little attention to interactions between rain and plant canopies, where rainfall is partitioned into throughfall and stemflow. Even less DOC research has investigated the effect of arboreal epiphytes on throughfall and stemflow DOC. The purpose of this study is twofold: (1) assess the degree and timing of DOC consumption by microbial communities (biolability) in throughfall and stemflow, and (2) determine whether the presence of arboreal epiphytes in the canopy affect DOC biolability. Biolability of stemflow and throughfall DOC from Juniperus virginiana (cedar) was determined by incubating samples for 14 days. Throughfall and stemflow DOC was highly biolabile with DOC concentrations decreasing by 30-60%. Throughfall DOC was more biolabile than stemflow DOC. DOC in both throughfall and stemflow from epiphyte-covered cedars was less biolabile than DOC from trees without epiphytes. The high biolability of tree-derived DOC indicates that its supply provides carbon substrates to the microbial community at the forest floor, in soils and the rhizosphere. Epiphytes appear to be important in determining the biolability of DOC and therefore the size of this carbon subsidy to the soil ecosystem.

Cardiac RNAi therapy using RAGE siRNA/deoxycholic acid-modified polyethylenimine complexes for myocardial infarction.

PubMed

Hong, Jueun; Ku, Sook Hee; Lee, Min Sang; Jeong, Ji Hoon; Mok, Hyejung; Choi, Donghoon; Kim, Sun Hwa

2014-08-01

Inflammatory response in myocardial ischemia-reperfusion injury plays a critical role in ventricular remodeling. To avoid deleterious effects of overwhelming inflammation, we blocked the expression of receptor for advanced glycation end-products (RAGE), a key mediator of the local and systemic inflammatory responses, via RNAi mechanism. Herein, a facial amphipathic deoxycholic acid-modified low molecular weight polyethylenimine (DA-PEI) was used as a siRNA delivery carrier to myocardium. The DA-PEI conjugate formed a stable complex with siRNA via electrostatic and hydrophobic interactions. The siRAGE/DA-PEI formulation having negligible toxicity could enhance intracellular delivery efficiency and successfully suppress RAGE expression both in vitro and in vivo. Furthermore, the cardiac administration of siRAGE/DA-PEI reduced apoptosis and inflammatory cytokine release, subsequently led to attenuation of left ventricular remodeling in rat myocardial infarction model. The potential therapeutic effects of RAGE gene silencing on myocardial ischemia-reperfusion injury may suggest that the siRAGE/DA-PEI delivery system can be considered as a promising strategy for treating myocardial infarction. Copyright © 2014 Elsevier Ltd. All rights reserved.

Diagnosis of Processes Controlling Dissolved Organic Carbon (DOC) Export in a Subarctic Region by a Dynamic Ecosystem Model

NASA Astrophysics Data System (ADS)

Tang, J.

2015-12-01

Permafrost thawing in high latitudes allows more soil organic carbon (SOC) to become hydrologically accessible. This can increase dissolved organic carbon (DOC) exports and carbon release to the atmosphere as CO2 and CH4, with a positive feedback to regional and global climate warming. However, this portion of carbon loss through DOC export is often neglected in ecosystem models. In this paper, we incorporate a set of DOC-related processes (DOC production, mineralization, diffusion, sorption-desorption and leaching) into an Arctic-enabled version of the dynamic ecosystem model LPJ-GUESS (LPJ-GUESS WHyMe) to mechanistically model the DOC export, and to link this flux to other ecosystem processes. The extended LPJ-GUESS WHyMe with these DOC processes is applied to the Stordalen catchment in northern Sweden. The relative importance of different DOC-related processes for mineral and peatland soils for this region have been explored at both monthly and annual scales based on a detailed variance-based Sobol sensitivity analysis. For mineral soils, the annual DOC export is dominated by DOC fluxes in snowmelt seasons and the peak in spring is related to the runoff passing through top organic rich layers. Two processes, DOC sorption-desorption and production, are found to contribute most to the annual variance in DOC export. For peatland soils, the DOC export during snowmelt seasons is constrained by frozen soils and the processes of DOC production and mineralization, determining the magnitudes of DOC desorption in snowmelt seasons as well as DOC sorption in the rest of months, play the most important role in annual variances of DOC export. Generally, the seasonality of DOC fluxes is closely correlated with runoff seasonality in this region. The current implementation has demonstrated that DOC-related processes in the framework of LPJ-GUESS WHyMe are at an appropriate level of complexity to represent the main mechanism of DOC dynamics in soils. The quantified contributions from different processes on DOC export dynamics could be further linked to the climate change, vegetation composition change and permafrost thawing in this region.

Dissolved organic carbon in Alaskan boreal forest: Sources, chemical characteristics, and biodegradability

USGS Publications Warehouse

Wickland, K.P.; Neff, J.C.; Aiken, G.R.

2007-01-01

The fate of terrestrially-derived dissolved organic carbon (DOC) is important to carbon (C) cycling in both terrestrial and aquatic environments, and recent evidence suggests that climate warming is influencing DOC dynamics in northern ecosystems. To understand what determines the fate of terrestrial DOC, it is essential to quantify the chemical nature and potential biodegradability of this DOC. We examined DOC chemical characteristics and biodegradability collected from soil pore waters and dominant vegetation species in four boreal black spruce forest sites in Alaska spanning a range of hydrologic regimes and permafrost extents (Well Drained, Moderately Well Drained, Poorly Drained, and Thermokarst Wetlands). DOC chemistry was characterized using fractionation, UV-Vis absorbance, and fluorescence measurements. Potential biodegradability was assessed by incubating the samples and measuring CO2 production over 1 month. Soil pore water DOC from all sites was dominated by hydrophobic acids and was highly aromatic, whereas the chemical composition of vegetation leachate DOC varied significantly with species. There was no seasonal variability in soil pore water DOC chemical characteristics or biodegradability; however, DOC collected from the Poorly Drained site was significantly less biodegradable than DOC from the other three sites (6% loss vs. 13-15% loss). The biodegradability of vegetation-derived DOC ranged from 10 to 90% loss, and was strongly correlated with hydrophilic DOC content. Vegetation such as Sphagnum moss and feathermosses yielded DOC that was quickly metabolized and respired. In contrast, the DOC leached from vegetation such as black spruce was moderately recalcitrant. Changes in DOC chemical characteristics that occurred during microbial metabolism of DOC were quantified using fractionation and fluorescence. The chemical characteristics and biodegradability of DOC in soil pore waters were most similar to the moderately recalcitrant vegetation leachates, and to the microbially altered DOC from all vegetation leachates. ?? 2007 Springer Science+Business Media, LLC.

Dissolved organic carbon and its potential predictors in eutrophic lakes.

PubMed

Toming, Kaire; Kutser, Tiit; Tuvikene, Lea; Viik, Malle; Nõges, Tiina

2016-10-01

Understanding of the true role of lakes in the global carbon cycle requires reliable estimates of dissolved organic carbon (DOC) and there is a strong need to develop remote sensing methods for mapping lake carbon content at larger regional and global scales. Part of DOC is optically inactive. Therefore, lake DOC content cannot be mapped directly. The objectives of the current study were to estimate the relationships of DOC and other water and environmental variables in order to find the best proxy for remote sensing mapping of lake DOC. The Boosted Regression Trees approach was used to clarify in which relative proportions different water and environmental variables determine DOC. In a studied large and shallow eutrophic lake the concentrations of DOC and coloured dissolved organic matter (CDOM) were rather high while the seasonal and interannual variability of DOC concentrations was small. The relationships between DOC and other water and environmental variables varied seasonally and interannually and it was challenging to find proxies for describing seasonal cycle of DOC. Chlorophyll a (Chl a), total suspended matter and Secchi depth were correlated with DOC and therefore are possible proxies for remote sensing of seasonal changes of DOC in ice free period, while for long term interannual changes transparency-related variables are relevant as DOC proxies. CDOM did not appear to be a good predictor of the seasonality of DOC concentration in Lake Võrtsjärv since the CDOM-DOC coupling varied seasonally. However, combining the data from Võrtsjärv with the published data from six other eutrophic lakes in the world showed that CDOM was the most powerful predictor of DOC and can be used in remote sensing of DOC concentrations in eutrophic lakes. Copyright © 2016 Elsevier Ltd. All rights reserved.

Soil-solution partitioning of DOC in acid organic soils: Results from a UK field acidification and alkalization experiment

NASA Astrophysics Data System (ADS)

Oulehle, Filip; Jones, Timothy; Burden, Annette; Evans, Chris

2013-04-01

Dissolved organic carbon (DOC) is an important component of the global carbon (C) cycle and has profound impacts on water chemistry and metabolism in lakes and rivers. Reported increases of DOC concentration in surface waters across Europe and Northern America have been attributed to several drivers; from changing climate and land-use to eutrophication and declining acid deposition. The last of these suggests that acidic deposition suppressed the solubility of DOC, and that this historic suppression is now being reversed by reducing emissions of acidifying pollutants. We studied a set of four parallel acidification and alkalization experiments in organic rich soils which, after three years of manipulation, have shown clear soil solution DOC responses to acidity change. We tested whether these DOC concentration changes were related to changes in the acid/base properties of DOC. Based on laboratory determination of DOC site density (S.D. = amount of carboxylic groups per milligram DOC) and charge density (C.D. = organic acid anion concentration per milligram DOC) we found that the change in DOC soil-solution partitioning was tightly related to the change in degree of dissociation (α = C.D./S.D. ratio) of organic acids (R2=0.74, p<0.01). Carbon turnover in soil organic matter (SOM), determined by soil respiration and β-D-glucosidase enzyme activity measurements, also appears to have some impact on DOC leaching, via constraints on the actual supply of available DOC from SOM; when the turnover rate of C in SOM is low, the effect of α on DOC leaching is reduced. Thus, differences in the magnitude of DOC changes seen across different environments might be explained by interactions between physicochemical restrictions of DOC soil-solution partitioning, and SOM carbon turnover effects on DOC supply.

Effect of Photochemical Transformation on Dissolved Organic Carbon Concentration and Bioavailability from Watersheds with Varying Landcover

NASA Astrophysics Data System (ADS)

Vermilyea, A.; Sanders, A.; Vazquez, E.

2017-12-01

The transformation of freshwater dissolved organic carbon (DOC) can have important implications for water quality, aquatic ecosystem health, and our climate. DOC is an important nutrient for heterotrophic microorganisms near the base of the aquatic food chain and the extent of conversion of DOC to CO2 is a critical piece of the global carbon cycle. Photochemical pathways have the potential to transform recalcitrant DOC into more labile forms that can then be converted to smaller DOC molecules and eventually be completely mineralized to CO2. This may lead to a DOC pool with different bioavailability depending on the structural composition of the original DOC pool and the mechanistic pathways undergone during transformation. This study aimed to measure the changes in DOC concentration and bioavailability due solely to photochemical processes in three watersheds of northern Vermont, USA that have varied land cover, land use (LCLU) attributes. Our hypothesis was that photochemical transformations will lead to (1) an overall loss of DOC due to mineralization to CO2 and (2) a relative increase in the bioavailable fraction of DOC. Additionally, the influence of LCLU and base flow versus storm flow on both mineralization rates and changes in DOC bioavailability was investigated. Irradiation of filtered samples in quartz vessels under sunlight led to small changes in DOC concentration over time, but significant changes in DOC bioavailability. In general, fluorescence excitation-emission matrices (EEMs) showed a shift from an initially more humic-like DOC pool, to a more protein-like (bioavailable) DOC pool. Specific UV index (SUVA) along with bioavailable DOC (BDOC) incubations were also used to characterize DOC and its bioavailability. There were only small differences in the DOC transformation that took place among sites, possibly due to only small differences in the initial bioavailability and fluorescent properties between water samples. Photochemical transformation appears to play an important role in the transformation of a more recalcitrant (humic) pool of DOC into a more bioavailable DOC pool that can then be utilized by aquatic heterotrophs and ultimately be converted to CO2.

Understanding DOC Mobilization Dynamics Through High Frequency Measurements in a Headwater Catchment

NASA Astrophysics Data System (ADS)

Werner, B.; Musolff, A.; Lechtenfeld, O.; de Rooij, G. H.; Fleckenstein, J. H.

2017-12-01

Increasing dissolved organic carbon (DOC) exports from headwater catchments impact the quality of downstream waters and pose challenges to water supply. The importance of riparian zones for DOC export from catchments in humid, temperate climates has generally been acknowledged, but the hydrological controls and biogeochemical factors that govern mobilization of DOC from riparian zones remain elusive. By analyzing high-frequency time series of UV-VIS based water quality we therefore aim at a better understanding on temporal dynamics of DOC mobilization and exports. In a first step a one year high frequency (15 minutes) data set from a headwater catchment in the Harz Mountains (Germany) was systematically analyzed for event-based patterns in DOC concentrations. Here, a simplistic linear model was generated to explain DOC concentration level and variability in the stream. Furthermore, spectral (e.g. slopes and SUVA254) and molecular (FT-ICR-MS) characterization of DOC was used to fingerprint in-stream DOC during events. Continuous DOC concentrations were best predicted (R², NSE = 0.53) by instantaneous discharge (Q) and antecede wetness conditions of the last 30 days (AWC30 = Precip.30/PET30) as well as mean air temperature (Tmean30) and mean discharge (Qmean30) of the preceding 30 days. Analyses of 36 events revealed seasonal trends for the slope, intercept and R² of linear log(DOC)-log(Q) regressions that can be best explained by the mean air temperature of the preceding 15 days. Continuously available optical DOC quality parameters SUVA254 and spectral slope (275 nm - 295 nm) systematically changed with shifts in discharge and in DOC concentration. This is underlined by selected FT-ICR-MS measurements indicating higher DOC aromaticity and oxygen content at high flow conditions. The change of DOC quality parameters during events indicate a shift in the activated source zones: DOC with a different quality was mobilized during high flow conditions when higher groundwater levels connected formerly disconnected DOC source zones to the stream. We conclude that the high concentration variability of DOC can be explained by a few controlling variables only. These variables can be linked to event-based DOC source activation and more seasonal controls of DOC production.

The Comparison of Different Heterotrophic Bacteria on the Decomposition of DOC molecule

NASA Astrophysics Data System (ADS)

Xie, R.; Zheng, Q.; Jiao, N.

2016-02-01

Marine dissolved organic carbon (DOC) pool is one of the largest reservoirs of organic carbon on Earth. Heterotrophic bacteria are the primary biotic force regulating the fate of marine DOC. Comparison of genomic data, microbes belonging to different clades have diverse DOC molecule utilization genes. That's give us a hint that different microbial groups may have their own pattern to decompose DOC, biosynthesize diverse DOC molecule and contribute to the in situ DOC reservoirs in the ocean. The interaction between marine microbes and DOC molecule is hotspots in current research. We will choose some important microbial groups (e.g., Roseobacter, Altermonas, Halomonas, SAR11 and CFB) to identify their contribution to environmental DOC pool and their specific recalcitrant DOC component using ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS). Combined with the composition of hydrolases, lyases and ligases in their genomes, we try to establish a linkage between the specific DOC composition and microbial genetic information. Future more the environmental metagenomic data would help us understand the relationship between the endemic DOC composition and microbial communities in the environment.

Stable and radiocarbon isotopic composition of dissolved organic matter in the Gulf of Mexico

NASA Astrophysics Data System (ADS)

Walker, B. D.; Druffel, E. R. M.; Kolasinski, J.; Roberts, B. J.; Xu, X.; Rosenheim, B. E.

2017-08-01

Dissolved organic carbon (DOC) is of primary importance to marine ecosystems and the global carbon cycle. Stable carbon (δ13C) and radiocarbon (Δ14C) isotopic measurements are powerful tools for evaluating DOC sources and cycling. However, the isotopic signature of DOC in the Gulf of Mexico (GOM) remains almost completely unknown. Here we present the first DOC Δ14C and δ13C depth profiles from the GOM. Our results suggest the Mississippi River exports large amounts of DOC with an anthropogenic "bomb" Δ14C signature. Riverine DOC is removed and recycled offshore, and some marine production of DOC is observed in the river plume. Offshore profiles show that DOC has higher Δ14C than its Caribbean feed waters, indicative of a modern deep DOC source in the GOM basin. Finally, high DOC with negative δ13C and Δ14C values were observed near the Macondo Wellhead, suggesting a transformation of Deepwater Horizon hydrocarbons into a persistent population of DOC.

Degradation potentials of dissolved organic carbon (DOC) from thawed permafrost peat

PubMed Central

Panneer Selvam, Balathandayuthabani; Lapierre, Jean-François; Guillemette, Francois; Voigt, Carolina; Lamprecht, Richard E.; Biasi, Christina; Christensen, Torben R.; Martikainen, Pertti J.; Berggren, Martin

2017-01-01

Global warming can substantially affect the export of dissolved organic carbon (DOC) from peat-permafrost to aquatic systems. The direct degradability of such peat-derived DOC, however, is poorly constrained because previous permafrost thaw studies have mainly addressed mineral soil catchments or DOC pools that have already been processed in surface waters. We incubated peat cores from a palsa mire to compare an active layer and an experimentally thawed permafrost layer with regard to DOC composition and degradation potentials of pore water DOC. Our results show that DOC from the thawed permafrost layer had high initial degradation potentials compared with DOC from the active layer. In fact, the DOC that showed the highest bio- and photo-degradability, respectively, originated in the thawed permafrost layer. Our study sheds new light on the DOC composition of peat-permafrost directly upon thaw and suggests that past estimates of carbon-dioxide emissions from thawed peat permafrost may be biased as they have overlooked the initial mineralization potential of the exported DOC. PMID:28378792

Carbon Isotope Composition as an Indicator of DOC Sources to a Stream During Events in a Temperate Forested Catchment

NASA Astrophysics Data System (ADS)

Doctor, D. H.; Sebestyen, S. D.; Aiken, G. R.; Shanley, J. B.; Kendall, C.; Boyer, E. W.

2006-12-01

Increased DOC flux in streams and rivers is commonly observed during high runoff regimes, however DOC concentrations alone do not provide information about multiple sources or pathways of DOC to streams. In an effort to gain this information, we measured DOC concentrations and stable carbon isotope composition (δ13C-DOC) on samples collected at high-frequency during events at Sleepers River Research Watershed in Vermont, USA. During snowmelt and storm events, peaks in stream DOC concentration (up to 10.5 mg/L) were coincident with peaks in flow. Stream water δ13C-DOC measurements ranged between -23.7‰ and - 28.9‰ and indicated changing sources of DOC during events; the highest δ13C-DOC values occurred consistently at the lowest flows, and the lowest δ13C-DOC values occurred with peaks in discharge. Water samples collected from shallow wells and stacked soil lysimeters showed the highest DOC concentrations in the most shallow (<0.5 m) lysimeter waters, and the lowest concentrations in the deeper (>1.5 m) well waters. Wells and lysimeters exhibited a range of δ13C-DOC values similar to those observed in the stream; however, samples collected from shallow horizons at nested wells and lysimeters consistently showed lower δ13C-DOC values than those from greater depths. Maple leaf litter collected from across the watershed provided an end-member of fresh organic material, with average δ13C composition of -31.3±0.7‰ (n=57), which is lower than the lowest measured DOC values in any of the stream, well, or lysimeter waters. A subset of stream waters were fractionated onto XAD4 and XAD8 resins; the hydrophobic acid fraction (XAD8) had consistently lower δ13C values than the transphilic acid fraction (XAD4), and both of these were lower than those of the bulk DOC. Samples with lower δ13C-DOC values also exhibited higher SUVA-254 values, i.e. greater aromaticity. Thus, lower δ13C-DOC values are interpreted as an indicator of relatively "fresh", more aromatic and more biologically labile material while higher δ13C-DOC values indicate relatively more degraded material. Since lower δ13C-DOC values were observed in the shallowest well and lysimeter waters and in stream water during periods of highest DOC flux, we surmise that fresh DOC is mobilized to the stream along relatively shallow flowpaths during high flows, and that a second source of more degraded DOC supplies background concentrations to the stream at lower flows.

The relationship between soil heterotrophic activity, soil dissolved organic carbon (DOC) leachate, and catchment-scale DOC export in headwater catchments

USGS Publications Warehouse

Brooks, P.D.; McKnight, Diane M.; Bencala, K.E.

1999-01-01

Dissolved organic carbon (DOC) from terrestrial sources forms the major component of the annual carbon budget in many headwater streams. In high-elevation catchments in the Rocky Mountains, DOC originates in the upper soil horizons and is flushed to the stream primarily during spring snowmelt. To identify controls on the size of the mobile soil DOC pool available to be transported during the annual melt event, we measured soil DOC production across a range of vegetation communities and soil types together with catchment DOC export in paired watersheds in Summit County, Colorado. Both surface water DOC concentrations and watershed DOC export were lower in areas where pyrite weathering resulted in lower soil pH. Similarly, the amount of DOC leached from organic soils was significantly smaller (p < 0.01) at sites having low soil pH. Scaling point source measurements of DOC production and leaching to the two basins and assuming only vegetated areas contribute to DOC production, we calculated that the amount of mobile DOC available to be leached to surface water during melt was 20.3 g C m−2 in the circumneutral basin and 17.8 g C m−2 in the catchment characterized by pyrite weathering. The significant (r2=0.91 and p < 0.05), linear relationship between over-winter CO2 flux and the amount of DOC leached from upper soil horizons during snowmelt suggests that the mechanism for the difference in production of mobile DOC was heterotrophic processing of soil carbon in snow-covered soil. Furthermore, this strong relationship between over-winter heterotrophic activity and the size of the mobile DOC pool present in a range of soil and vegetation types provides a likely mechanism for explaining the interannual variability of DOC export observed in high-elevation catchments.

Dissolved organic carbon in runoff and tile-drain water under corn and forage fertilized with hog manure.

PubMed

Royer, Isabelle; Angers, Denis A; Chantigny, Martin H; Simard, Régis R; Cluis, Daniel

2007-01-01

Dissolved organic carbon (DOC) export from soils can play a significant role in soil C cycling and in nutrient and pollutant transport. However, information about DOC losses from agricultural soils as influenced by management practices is scarce. We compared the effects of mineral fertilizer (MF) and liquid hog manure (LHM) applications on the concentration and molecular size of DOC released in runoff and tile-drain water under corn (Zea mays L.) and forage cropping systems. Runoff and tile-drain water samples were collected during a 2-mo period (October to December 1998) and DOC concentration was measured. Characterization of DOC was performed by tangential ultrafiltration with nominal cut-offs at 3 and 100 kDa. Mean concentration of DOC in runoff water (12.7 mg DOC L(-1)) was higher than in tile-drain water (6.5 mg DOC L(-1)). Incorporation of corn residues increased the DOC concentration by 6- to 17-fold in surface runoff, but this effect was short-lived. In runoff water, the relative size of the DOC molecules increased when corn residues and LHM were applied probably due to partial microbial breakdown of these organic materials and to a faster decomposition or preferential adsorption of the small molecules. The DOC concentration in tile-drain water was slightly higher under forage (7.5 mg DOC L(-1)) than under corn (5.4 mg DOC L(-1)) even though the application rates of LHM were higher in corn plots. We suggest that preferential flow facilitated the migration of DOC to tile drains in forage plots. In conclusion, incorporation of corn residues and LHM increased the concentration of DOC and the relative size of the molecules in surface runoff water, whereas DOC in tile-drain water was mostly influenced by the cropping system with relatively more DOC and larger molecules under forage than corn.

Chemical and carbon isotopic composition of dissolved organic carbon in a regional confined methanogenic aquifer

USGS Publications Warehouse

Aravena, R.; Wassenaar, L.I.; Spiker, E. C.

2004-01-01

This study demonstrates the advantage of a combined use of chemical and isotopic tools to understand the dissolved organic carbon (DOC) cycle in a regional confined methanogenic aquifer. DOC concentration and carbon isotopic data demonstrate that the soil zone is a primary carbon source of groundwater DOC in areas close to recharge zones. An in-situ DOC source linked to organic rich sediments present in the aquifer matrix is controlling the DOC pool in the central part of the groundwater flow system. DOC fractions, 13C-NMR on fulvic acids and 14C data on DOC and CH4 support the hypothesis that the in-situ DOC source is a terrestrial organic matter and discard the Ordovician bedrock as a source of DOC. ?? 2004 Taylor and Francis Ltd.

Automated determination of the stable carbon isotopic composition (δ13C) of total dissolved inorganic carbon (DIC) and total nonpurgeable dissolved organic carbon (DOC) in aqueous samples: RSIL lab codes 1851 and 1852

USGS Publications Warehouse

Révész, Kinga M.; Doctor, Daniel H.

2014-01-01

The purposes of the Reston Stable Isotope Laboratory (RSIL) lab codes 1851 and 1852 are to determine the total carbon mass and the ratio of the stable isotopes of carbon (δ13C) for total dissolved inorganic carbon (DIC, lab code 1851) and total nonpurgeable dissolved organic carbon (DOC, lab code 1852) in aqueous samples. The analysis procedure is automated according to a method that utilizes a total carbon analyzer as a peripheral sample preparation device for analysis of carbon dioxide (CO2) gas by a continuous-flow isotope ratio mass spectrometer (CF-IRMS). The carbon analyzer produces CO2 and determines the carbon mass in parts per million (ppm) of DIC and DOC in each sample separately, and the CF-IRMS determines the carbon isotope ratio of the produced CO2. This configuration provides a fully automated analysis of total carbon mass and δ13C with no operator intervention, additional sample preparation, or other manual analysis. To determine the DIC, the carbon analyzer transfers a specified sample volume to a heated (70 °C) reaction vessel with a preprogrammed volume of 10% phosphoric acid (H3PO4), which allows the carbonate and bicarbonate species in the sample to dissociate to CO2. The CO2 from the reacted sample is subsequently purged with a flow of helium gas that sweeps the CO2 through an infrared CO2 detector and quantifies the CO2. The CO2 is then carried through a high-temperature (650 °C) scrubber reactor, a series of water traps, and ultimately to the inlet of the mass spectrometer. For the analysis of total dissolved organic carbon, the carbon analyzer performs a second step on the sample in the heated reaction vessel during which a preprogrammed volume of sodium persulfate (Na2S2O8) is added, and the hydroxyl radicals oxidize the organics to CO2. Samples containing 2 ppm to 30,000 ppm of carbon are analyzed. The precision of the carbon isotope analysis is within 0.3 per mill for DIC, and within 0.5 per mill for DOC.

Assessing contribution of DOC from sediments to a drinking-water reservoir using optical profiling

USGS Publications Warehouse

Downing, Bryan D.; Bergamaschi, Brian A.; Evans, David G.; Boss, Emmanuel

2008-01-01

Understanding the sources of dissolved organic carbon (DOC) in drinking-water reservoirs is an important management issue because DOC may form disinfection by-products, interfere with disinfection, or increase treatment costs. DOC may be derived from a host of sources-algal production of DOC in the reservoir, marginal production of DOC from mucks and vascular plants at the margins, and sediments in the reservoir. The purpose of this study was to assess if release of DOC from reservoir sediments containing ferric chloride coagulant was a significant source of DOC to the reservoir. We examined the source-specific contributions of DOC using a profiling system to measure the in situ distribution of optical properties of absorption and fluorescence at various locations in the reservoir. Vertical optical profiles were coupled with discrete water samples measured in the laboratory for DOC concentration and optical properties: absorption spectra and excitation emission matrix spectra (EEMs). Modeling the in situ optical data permitted estimation of the bulk DOC profile in the reservoir as well as separation into source-specific contributions. Analysis of the source-specific profiles and their associated optical characteristics indicated that the sedimentary source of DOC to the reservoir is significant and that this DOC is labile in the reservoir. We conclude that optical profiling is a useful technique for understanding complex biogeochemical processes in a reservoir.

Dissolved Organic Carbon in the Yukon, Tanana and Porcupine Rivers, Alaska

NASA Astrophysics Data System (ADS)

Aiken, G. R.; Striegl, R. G.; Wickland, K. P.; Dornblaser, M. M.; Raymond, P. A.

2006-12-01

The spatial and temporal variability of dissolved organic carbon (DOC) in the Yukon River (YR) and two major tributaries, the Porcupine River (PR), a black water river draining a watershed almost entirely underlain by permafrost, and the Tanana River (TR), a glacial dominated river, are being studied to better define processes controlling DOC in these systems. Five-year seasonal averages indicate DOC concentrations follow the discharge hydrograph, with highest daily and seasonal flux occurring during spring in YR and PR and during summer-autumn in TR. Largest DOC concentrations and specific UV absorption (SUVA) values, a measure of aromatic carbon content of the DOC and an indicator of DOC source, occurred at all locations during spring snowmelt. Lowest DOC concentration and SUVA occurred during low-flow in winter due to greatly reduced contributions of soil organic matter and to relatively greater influences of ground water. While all sites had comparable DOC concentration during winter, DOC concentration was greatest at PR during spring and summer-autumn, whereas TR had the lowest average DOC and SUVA values. Within the YR, average DOC concentration and SUVA values in spring and summer-autumn increase downriver due to contributions from organic carbon rich tributaries, such as PR, that increase in number and significance as the river flows through Alaska. Most the DOC in each system was comprised of hydrophobic organic acids (HPOA) derived from terrestrial vegetation. During winter, the hydrophilic fraction, determined to be the most biodegradable, was a larger percentage of the DOC than during spring-autumn. During spring, HPOA concentration and SUVA increased significantly at all sites, suggesting that most DOC in spring is derived from terrestrial organic matter that was frozen on the land surface over winter. During spring-autumn, PR had the largest concentration of HPOA and TR had the least. Like DOC concentration, HPOA concentration and SUVA increased down river. 14C-DOC values correspond to radiocarbon ages of modern (PR), 282 (TR), and 328 (YR) yrs B.P, indicating the presence of some aged DOC in YR and TR. Comparison of the chemical character of DOC from sites along the YR suggests that most DOC is transported from its source to the Bering Sea with little within river chemical or biological alteration, a result supported by laboratory biodegradation experiments.

Influence of organic carbon loading, sediment associated metal oxide content and sediment grain size distributions upon Cryptosporidium parvum removal during riverbank filtration operations, Sonoma County, CA

USGS Publications Warehouse

Metge, D.W.; Harvey, R.W.; Aiken, G.R.; Anders, R.; Lincoln, G.; Jasperse, James

2010-01-01

This study assessed the efficacy for removing Cryptosporidium parvum oocysts of poorly sorted, Fe- and Al-rich, subsurface sediments collected from 0.9 to 4.9 and 1.7–13.9 m below land surface at an operating riverbank filtration (RBF) site (Russian River, Sonoma County, CA). Both formaldehyde-killed oocysts and oocyst-sized (3 μm) microspheres were employed in sediment-packed flow-through and static columns. The degree of surface coverage of metal oxides on sediment grain surfaces correlated strongly with the degrees of oocyst and microsphere removals. In contrast, average grain size (D50) was not a good indicator of either microsphere or oocyst removal, suggesting that the primary mechanism of immobilization within these sediments is sorptive filtration rather than physical straining. A low specific UV absorbance (SUVA) for organic matter isolated from the Russian River, suggested that the modest concentration of the SUVA component (0.8 mg L−1) of the 2.2 mg L−1dissolved organic carbon (DOC) is relatively unreactive. Nevertheless, an amendment of 2.2 mg L−1 of isolated river DOC to column sediments resulted in up to a 35.7% decrease in sorption of oocysts and (or) oocyst-sized microspheres. Amendments (3.2 μM) of the anionic surfactant, sodium dodecyl benzene sulfonate (SDBS) also caused substantive decreases (up to 31.9 times) in colloid filtration. Although the grain-surface metal oxides were found to have a high colloid-removal capacity, our study suggested that any major changes within the watershed that would result in long-term alterations in either the quantity and (or) the character of the river's DOC could alter the effectiveness of pathogen removal during RBF operations.

Relationship between the colored dissolved organic matter and dissolved organic carbon and the application on remote sensing in East China Sea

NASA Astrophysics Data System (ADS)

Qiong, Liu; Pan, Delu; Huang, Haiqing; Lu, Jianxin; Zhu, Qiankun

2011-11-01

A cruise was conducted in the East China Sea (ECS) in autumn 2010 to collect Dissolved Organic Carbon (DOC) and Colored Dissolved Organic Matter (CDOM) samples. The distribution of DOC mainly controlled by the hydrography since the relationship between DOC and salinity was significant in both East China Sea. The biological activity had a significant influence on the concentration of DOC with a close correlation between DOC and Chl a. The absorption coefficient of CDOM (a355) decreased with the salinity increasing in the shelf of East China Sea (R2=0.9045). CDOM and DOC were significantly correlated in ECS where DOC distribution was dominated largely by the Changjiang diluted water. Based on the relationship of CDOM and DOC, we estimated the DOC concentration of the surface in ECS from satellite-derived CDOM images. Some deviations induced by the biological effect and related marine DOC accumulations were discussed.

Overview of a simple model describing variation of dissolved organic carbon in an upland catchment

USGS Publications Warehouse

Boyer, Elizabeth W.; Hornberger, George M.; Bencala, Kenneth E.; McKnight, Diane M.

1996-01-01

Hydrological mechanisms controlling the variation of dissolved organic carbon (DOC) were investigated in the Deer Creek catchment located near Montezuma, CO. Patterns of DOC in streamflow suggested that increased flows through the upper soil horizon during snowmelt are responsible for flushing this DOC-enriched interstitial water to the streams. We examined possible hydrological mechanisms to explain the observed variability of DOC in Deer Creek by first simulating the hydrological response of the catchment using TOPMODEL and then routing the predicted flows through a simple model that accounted for temporal changes in DOC. Conceptually the DOC model can be taken to represent a terrestrial (soil) reservoir in which DOC builds up during low flow periods and is flushed out when infiltrating meltwaters cause the water table to rise into this “reservoir”. Concentrations of DOC measured in the upper soil and in streamflow were compared to model simulations. The simulated DOC response provides a reasonable reproduction of the observed dynamics of DOC in the stream at Deer Creek.

Photochemical alteration of organic carbon draining permafrost soils shifts microbial metabolic pathways and stimulates respiration.

PubMed

Ward, Collin P; Nalven, Sarah G; Crump, Byron C; Kling, George W; Cory, Rose M

2017-10-03

In sunlit waters, photochemical alteration of dissolved organic carbon (DOC) impacts the microbial respiration of DOC to CO 2 . This coupled photochemical and biological degradation of DOC is especially critical for carbon budgets in the Arctic, where thawing permafrost soils increase opportunities for DOC oxidation to CO 2 in surface waters, thereby reinforcing global warming. Here we show how and why sunlight exposure impacts microbial respiration of DOC draining permafrost soils. Sunlight significantly increases or decreases microbial respiration of DOC depending on whether photo-alteration produces or removes molecules that native microbial communities used prior to light exposure. Using high-resolution chemical and microbial approaches, we show that rates of DOC processing by microbes are likely governed by a combination of the abundance and lability of DOC exported from land to water and produced by photochemical processes, and the capacity and timescale that microbial communities have to adapt to metabolize photo-altered DOC.The role of dissolved organic carbon (DOC) photo-alteration in the microbial respiration of DOC to CO 2 is unclear. Here, the authors show that the impact of this mechanism depends on whether photo-alteration of DOC produces or removes molecules used by native microbial communities prior to light exposure.

Photooxidation and Microbial Processing of Ancient and Modern Dissolved Organic Carbon in the Kolyma River, Siberia.

NASA Astrophysics Data System (ADS)

Behnke, M. I.; Mann, P. J.; Schade, J. D.; Spawn, S.; Zimov, N.

2015-12-01

Permafrost soils in northern high latitudes store large quantities of organic carbon that have remained frozen for thousands of years. As global temperatures increase, permafrost deposits have begun to thaw, releasing previously stored ancient carbon to streams and rivers in the form of dissolved organic carbon (DOC). Newly mobilized DOC is then subjected to processing by photooxidation and microbial metabolism. Permafrost-derived DOC is highly bioavailable directly upon release relative to modern DOC derived from plants and surface active layer soils. Our objectives were to assess the interaction of photodegradation and microbial processing, and to quantify any light priming effect on the microbial consumption of both ancient and modern sourced DOC pools. We exposed sterilized mixtures of ancient and modern DOC to ambient sunlight for six days, and then inoculated mixtures (0, 1, 10, 25, 50 & 100% ancient DOC) with microbes from both modern and ancient water sources. After inoculation, samples were incubated in the dark for five days. We measured biological oxygen demand, changes in absorbance, and DOC concentrations to quantify microbial consumption of DOC and identify shifts in DOC composition and biolability. We found evidence of photobleaching during irradiation (decreasing S275-295, increasing slope ratio, and decreasing SUVA254). Once inoculated, mixtures with more ancient DOC showed initially increased microbial respiration compared to mixtures with primarily modern DOC. During the first 24 hours, the light-exposed mixture with 50% ancient DOC showed 47.6% more oxygen consumption than did the dark 50% mixture, while the purely modern DOC showed 11.5% greater oxygen consumption after light exposure. After 5 days, the modern light priming was comparable to the 50% mixture (31.2% compared to 20.5%, respectively). Our results indicate that natural photoexposure of both modern and newly released DOC increases microbial processing rates over non photo-exposed DOC.

Removal of terrestrial DOC in aquatic ecosystems of a temperate river network

USGS Publications Warehouse

Wollheim, W.M.; Stewart, R. J.; Aiken, George R.; Butler, Kenna D.; Morse, Nathaniel B.; Salisbury, J.

2015-01-01

Surface waters play a potentially important role in the global carbon balance. Dissolved organic carbon (DOC) fluxes are a major transfer of terrestrial carbon to river systems, and the fate of DOC in aquatic systems is poorly constrained. We used a unique combination of spatially distributed sampling of three DOC fractions throughout a river network and modeling to quantify the net removal of terrestrial DOC during a summer base flow period. We found that aquatic reactivity of terrestrial DOC leading to net loss is low, closer to conservative chloride than to reactive nitrogen. Net removal occurred mainly from the hydrophobic organic acid fraction, while hydrophilic and transphilic acids showed no net change, indicating that partitioning of bulk DOC into different fractions is critical for understanding terrestrial DOC removal. These findings suggest that river systems may have only a modest ability to alter the amounts of terrestrial DOC delivered to coastal zones.

Long-term decomposition of DOC from experimental diatom blooms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fry, B.; Hopkinson, C.S. Jr.; Nolin, A.

1996-09-01

Decomposition of {sup 13}C-labeled dissolved organic carbon (DOC) produced in two marine diatom blooms was followed for 2.5 yr with large volume (20 liter) incubations performed in the dark. The {sup 13}C tracer was used to partition decomposition dynamics of the fresh diatom-derived DOC and the turnover of background DOC from Woods Hole Harbor. DOC from Woods Hole harbor proved largely refractory, with DOC concentrations falling from 122 to {approximately} 100 {mu}M C in 2.5 yr. DOC from the diatom blooms was more labile, but was also incompletely mineralized, with 25-35% remaining after 2.5 yr. Neither nutrients nor labile carbonmore » (dextrose) added at 1.5 yr significantly stimulated DOC mineralization. The experiments indicate that DOC produced in short-term blooms can be surprisingly resistant to microbial attack. 21 refs., 1 fig., 1 tab.« less

Acid-induced changes in DOC quality in an experimental whole-lake manipulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Donahue, W.F.; Schindler, D.W.; Page, S.J.

1998-10-01

Fluorescence analyses of archived water samples were used to typify dissolved organic carbon (DOC) quality in experimentally acidified lakes and reference lakes at the Experimental Lakes Area, in northwestern Ontario. Carbon-specific DOC fluorescence (CSF) during peak acidification was 40--50% of that for a high-DOC reference lake and similar to a low-DOC reference lake. Reference lakes showed similar but smaller decreases in CSF during several years of prolonged drought in the late 1980s. During the 1990s, recovery from acidification resulted in increased CSF, whereas reference lakes remained unchanged during the same time period. In addition to causing decreased [DOC], acidification causesmore » changes in fluorescence-peak geometry that indicate a switch in DOC quality from allochthonous to autochthonous-like during acidification. The acid-induced change in DOC quality was likely due to increased chemical oxidation or precipitation of the UV-absorbent aromatic portions of allochthonous DOC molecules, leaving more UV-transparent aliphatic chains. The change in the nature of DOC following acidification and drought may have an important role in physical, biological, and chemical processes within these lakes. With recovery from acidification, DOC quality has also recovered.« less

Response Characteristics of Dissolved Organic Carbon Flushing in a Subarctic Alpine Catchment

NASA Astrophysics Data System (ADS)

Carey, S. K.

2002-12-01

Dissolved organic carbon (DOC) is an important part of ecosystem-scale carbon balances and in the transport of contaminants as it interacts with other dissolved substances including trace metals. It also can be used as a surrogate hydrological tracer in permafrost regions as near-surface waters are often DOC enriched due to the presence of thick organic soils. In a small subarctic alpine catchment within the Wolf Creek Research Basin, Yukon, Canada, DOC was studied in the summer of 2001 and spring of 2002 to determine the role frost (both permanent and seasonal), snowmelt and summer storms on DOC flushing. Peak DOC concentrations occurred during the snowmelt period, approximately one week prior to peak discharge. However, peak discharge took place several weeks after snow on south facing exposures had melted. Within the hillslopes, DOC concentrations were three to five times greater in wells underlain with permafrost compared with seasonal frost. Groundwater DOC concentrations declined during snowmelt, yet remained at levels above the streamflow. After peaking, streamflow DOC concentrations declined exponentially suggesting a simple flushing mechanism, however there did not appear to be a relation between DOC and topographic position. Following melt, permafrost underlain slopes had near-surface water tables and retained elevated levels of DOC, whereas slopes without permafrost had rapidly declining water tables at upslope locations with low DOC concentrations at all positions except near-stream riparian zones. The influence of summer rainstorms on DOC was monitored on three occasions. In each case DOC peaked on the ascending limb of the runoff hydrograph and declined exponentially on the receding limb and hysteretic behavior occurred between discharge and DOC during all events. Patterns of DOC within the hillslopes and streams suggest that runoff from permafrost-underlain slopes control DOC flushing within the stream during both snowmelt and summer periods. This flushing mechanism conforms with conceptual models of runoff generation in discontinuous permafrost catchments whereby water tables within permafrost-underlain slopes rise into porous organic-layers, whereupon DOC is leached into the water and rapidly conveyed to the stream.

Does wildfire cause cascading effects on aquatic C cycling? A study of soil, well and lake DOC composition and bio/photolability

NASA Astrophysics Data System (ADS)

Olefeldt, D.; Turetsky, M. R.; Devito, K. J.; Blodau, C.

2012-12-01

In May 2011 a wildfire broke out north of Utikuma Lake in central Alberta, Canada, which eventually burned an area of ~880 km2. Wildfire alters soil properties, potentially altering the chemical composition of terrestrial DOC that reaches downstream aquatic environments. In order to study the potential effects of wildfire on lake carbon cycling, we sampled and incubated DOC from soil samples (n=52), wells (n=35) and lakes (n=32) from within and outside the recent fire perimeter. We incubated the DOC samples under both dark and UV conditions to assess both bio- and photolability, and followed DOC composition throughout the incubations by measuring DOC absorbing and fluorescing properties. A strong effect of wildfire was found among DOC samples leached from surface peatland and upland soils - with fire yielding increased DOC aromaticity associated with decreased biodegradability but also increased photolability. Parallel factor analysis of fluorescence matrices revealed distinct regions that were associated with DOC leached from charred soils, potentially linked to their lower biodegradability. Dark and UV conditions gave rise to very different trajectories of changes to DOC composition throughout incubations, with preferential losses of non-aromatic DOC under dark conditions and aromatic DOC under UV conditions. The DOC composition index that was found to best predict both DOC bio- and photolability was specific UV absorbance, which is also a very simple and quick index to measure. For lakes, we found that the primary influences on DOC composition and bio-/photolability was linked to lake size and hydrogeological setting (whether located on a lacustrine clay plain or in a moraine/outwash region) that controls groundwater influence and the hydrological connectivity to adjacent peatlands. Further analysis of well and lake water incubations will be used to detect whether wildfire can be detected to have a subtle secondary effect on DOC composition and lability or if the potential for cascading effects on lake C cycling due to altered soil DOC sources remain unrealized in the study region.

Dynamics, chemical properties and bioavailability of DOC in an early successional catchment

NASA Astrophysics Data System (ADS)

Risse-Buhl, U.; Hagedorn, F.; Dümig, A.; Gessner, M. O.; Schaaf, W.; Nii-Annang, S.; Gerull, L.; Mutz, M.

2013-07-01

The dynamics of dissolved organic carbon (DOC) have been intensively studied in mature ecosystems, but little is known about DOC dynamics and the significance of DOC as a substrate for microbial activity in early-successional catchments. We determined the concentration, chemical composition, source, radiocarbon age, and bioavailability of DOC along the hydrological flow path from soil solution to a downstream pond in a recently constructed catchment (Chicken Creek Catchment, Germany). Soil solution, upwelling ground water, stream water, subsurface water in an alluvial fan, and pond water all had high DOC concentrations (averages: 6.0-11.6 mg DOC L-1), despite small carbon stocks in both vegetation and soil of the catchment. Solid-state CPMAS 13C NMR of DOC in upwelling ground water revealed a higher proportion of aromatic compounds (32%) and a lower proportion of carbohydrates (33%) than in pond water (18% and 45%, respectively). The average 14C age of DOC in upwelling ground water was 2600 to 2900 yr, while organic matter of the Quaternary substrate of the catchment had a 14C age of 3000 to 16 000 yr. Both the 14C age data and 13C NMR spectra suggest that DOC partly derived from organic matter of the Quaternary substrate (about 40 to 90% of the C in the DOC), indicating that both recent and old C of the DOC can support microbial activity during early ecosystem succession. However, in a 70 day incubation experiment, only about 11% of the total DOC was found to be bioavailable. This proportion was irrespective of the water type. Origin of the microbial communities within the catchment (enriched from soil, stream sediment or pond water) also had only a marginal effect on overall DOC utilization.

Association of dissolved mercury with dissolved organic carbon in U.S. rivers and streams: The role of watershed soil organic carbon

NASA Astrophysics Data System (ADS)

Stoken, Olivia M.; Riscassi, Ami L.; Scanlon, Todd M.

2016-04-01

Streams and rivers are important pathways for the export of atmospherically deposited mercury (Hg) from watersheds. Dissolved Hg (HgD) is strongly associated with dissolved organic carbon (DOC) in stream water, but the ratio of HgD to DOC is highly variable between watersheds. In this study, the HgD:DOC ratios from 19 watersheds were evaluated with respect to Hg wet deposition and watershed soil organic carbon (SOC) content. On a subset of sites where data were available, DOC quality measured by specific ultra violet absorbance at 254 nm, was considered as an additional factor that may influence HgD:DOC . No significant relationship was found between Hg wet deposition and HgD:DOC, but SOC content (g m-2) was able to explain 81% of the variance in the HgD:DOC ratio (ng mg-1) following the form: HgD:DOC=17.8*SOC-0.41. The inclusion of DOC quality as a secondary predictor variable explained only an additional 1% of the variance. A mathematical framework to interpret the observed power-law relationship between HgD:DOC and SOC suggests Hg supply limitation for adsorption to soils with relatively large carbon pools. With SOC as a primary factor controlling the association of HgD with DOC, SOC data sets may be utilized to predict stream HgD:DOC ratios on a more geographically widespread basis. In watersheds where DOC data are available, estimates of HgD may be readily obtained. Future Hg emissions policies must consider soil-mediated processes that affect the transport of Hg and DOC from terrestrial watersheds to streams for accurate predictions of water quality impacts.

Drivers of inverse DOC-nitrate loss patterns in forest soils and streams

NASA Astrophysics Data System (ADS)

Goodale, C. L.

2013-12-01

Nitrate loss from forested catchments varies greatly across sites and over time, with few reliable correlates. One of the few recurring patterns, however, is the negative nonlinear relationship that occurs regularly between surface water nitrate and dissolved organic carbon (DOC) concentrations: that is, nitrate declines sharply as DOC concentrations increase, and high nitrate levels occur only at low DOC concentrations. Several hypotheses have been proposed to explain this pattern, but its cause has remained speculative. It is likely to be driven by C- or N-limitation of biological processes such as assimilation or denitrification, but the identity of which biological process or the main landscape position of their activity are not known. We examined whether DOC and nitrate are both driven by soil C content, at scales of both soil blocks and across catchments, by measuring soil, soil extract, and surface water chemistry across nine catchments selected from long-term monitoring networks in the Catskill and Adirondack Mountains. We measured soil C and N status and solution nitrate, DOC, bioavailable DOC (bDOC), and isotopic composition (13C-DOC, 15N- and 18O-NO3) to examine whether variation in stocks of soil C partly controls DOC and nitrate loss from forested catchments in New York State. These measurements showed that surface soil C and C:N ratio together determine soil production of DOC and nitrate, reflecting assimilative demand for N by heterotrophic microbes. Yet, they also show that these processes do not produce the inverse DOC-NO3 curve observed at the catchment scale. Rather, catchment-scale DOC-nitrate patterns are more likely to be governed by the balance between excess nitrate production and its bDOC-mediated loss to denitrification.

Contrasting dissolved organic carbon dynamics at two forested catchments interpreted from high-frequency optical sensor measurements

NASA Astrophysics Data System (ADS)

Saraceno, J.; Shanley, J. B.

2015-12-01

Stream dissolved organic carbon (DOC) concentrations can change rapidly during high-flow events. The timing and magnitude of these changes relative to the event hydrograph can yield insights about possible DOC sources its flow paths to the stream. In situ fluorescent dissolved organic matter (FDOM) sensors that generate high-frequency observations enable detailed examination of high-flow DOC- discharge hysteresis. In this presentation, we interpret high-flow DOC dynamics at two of the five U.S. Geological Survey (USGS) Water, Energy, and Biogeochemical Budgets (WEBB) sites - Panola Mountain, Georgia and Sleepers River, Vermont. Based on laboratory analyses of weekly and event grab samples, both USGS WEBB sites had a similar DOC ranges: from ~1 milligrams per liter (mg/L) at base flow to ~11-15 mg/L during the largest events. A curvilinear relationship between DOC and FDOM (corrected for temperature and turbidity interferences) was used to model a continuous time series of DOC. At the Sleepers River site, DOC showed a seasonal pattern of increasing DOC response; from fairly subdued during spring snowmelt, to a maximum during autumn leaf-fall. The DOC response to discharge showed a consistent clockwise hysteresis (DOC peak, lagged discharge peak). At the Panola Mountain site, maximum event DOC response was lower during wet conditions in the winter and spring. Hysteresis was less expressed at Panola Mountain relative to Sleepers River and displayed both clockwise and counterclockwise patterns, which were dependent on antecedent moisture conditions. The greater synchrony of DOC and discharge peaks at Panola Mountain suggests that DOC sources are closer to the stream and (or) move to the stream more quickly, than at Sleepers River.

Diel fluctuations of viscosity-driven riparian inflow affect streamflow DOC concentration

NASA Astrophysics Data System (ADS)

Schwab, Michael P.; Klaus, Julian; Pfister, Laurent; Weiler, Markus

2018-04-01

Diel fluctuations of stream water DOC concentrations are generally explained by a complex interplay of different instream processes. We measured the light absorption spectrum of water and DOC concentrations in situ and with high frequency by means of a UV-Vis spectrometer during 18 months at the outlet of a forested headwater catchment in Luxembourg (0.45 km2). We generally observed diel DOC fluctuations with a maximum in the afternoon during days that were not affected by rainfall-runoff events. We identified an increased inflow of terrestrial DOC to the stream in the afternoon, causing the DOC maxima in the stream. The terrestrial origin of the DOC was derived from the SUVA-254 (specific UV absorbance at 254 nm) index, which is a good indicator for the aromaticity of DOC. In the studied catchment, the most likely process that can explain the diel DOC input variations towards the stream is the so-called viscosity effect. The water temperature in the upper parts of the saturated riparian zone is increasing during the day, leading to a lower viscosity and therefore a higher hydraulic conductivity. Consequently, more water from areas that are rich in terrestrial DOC passes through the saturated riparian zone and contributes to streamflow in the afternoon. We believe that not only diel instream processes, but also viscosity-driven diel fluctuations of terrestrial DOC input should be considered to explain diel DOC patterns in streams.

Organic Carbon Mobilisation Mechanisms: Evidence from Globally Distributed Stalagmite Records

NASA Astrophysics Data System (ADS)

Baldini, J. U. L.; Fairchild, I. J.; Wynn, P.; Bourdin, C.; Muller, W.; Hartland, A.; Perrette, Y.; Worrall, F.; Bartlett, R.

2017-12-01

Identifying the cause of widespread increases in surface water dissolved organic carbon (DOC) concentrations in recent years is the subject of a contentious debate. Although DOC trends may partially reflect climate change, in many catchments they may also result from increased soil carbon solubility associated with decreases in acid rain due to lower atmospheric sulphur emissions. However, the lack of long-term DOC records hampers constraining climate's role in modulating DOC trends versus that of recovery from acidification. Here we help clarify the causes of recent DOC increases by using a combination of laboratory soil experiments and new stalagmite geochemical data. Laboratory experiments with soils sampled from above several key caves simulate the effect of acidity, temperature, and soil microbial processes on DOC release. These experiments are used to inform records of DOC encoded within several stalagmites from currently acidified, previously acidified, and unacidified sites, and which collectively yield insights into the timing of DOC change in the past. These records of stalagmite DOC concentration and composition are discussed within the context of the ongoing debate regarding the mechanism responsible for DOC release.

Colonic basidiobolomycosis with liver involvement masquerading as gastrointestinal lymphoma: a case report and literature review.

PubMed

Zekavat, Omid Reza; Abdolkarimi, Babak; Pouladfar, Gholamreza; Fathpour, Gholamreza; Mokhtari, Maral; Shakibazad, Nader

2017-01-01

Basidiobolomycosis is an unusual fungal skin infection that rarely involves the gastrointestinal tract. This study reported a 5-year-old boy with gastrointestinal basidiobolomycosis that had been misdiagnosed as gastrointestinal lymphoma. He was treated by surgical resection and a combination of posaconazole and amphotericin B deoxycholate with an acceptable response and no recurrence.

Distribution characteristics of dissolved organic carbon in annular wetland soil-water solutions through soil profiles in the Sanjiang Plain, northeast China.

PubMed

Xi, Min; Lu, Xian-Guo; Li, Yue; Kong, Fan-Long

2007-01-01

Overwhelming evidence reveals that concentrations of dissolved organic carbon (DOC) have increased in streams which brings negative environmental impacts. DOC in stream flow is mainly originated from soil-water solutions of watershed. Wetlands prove to be the most sensitive areas as an important DOC reserve between terrestrial and fluvial biogeosystems. This reported study was focused on the distribution characteristics and the controlling factors of DOC in soil-water solutions of annular wetland, i.e., a dishing wetland and a forest wetland together, in the Sanjiang Plain, Northeast China. The results indicate that DOC concentrations in soil-water solutions decreased and then increased with increasing soil depth in the annular wetland. In the upper soil layers of 0-10 cm and 10-20 cm, DOC concentrations in soil-water solutions linearly increased from edge to center of the annular wetland (R2 = 0.3122 and R2 = 0.443). The distribution variations were intimately linked to DOC production and utilization and DOC transport processes in annular wetland soil-water solutions. The concentrations of total organic carbon (TOC), total carbon (TC) and Fe(II), DOC mobility and continuous vertical and lateral flow affected the distribution variations of DOC in soil-water solutions. The correlation coefficients between DOC concentrations and TOC, TC and Fe(II) were 0.974, 0.813 and 0.753 respectively. These distribution characteristics suggested a systematic response of the distribution variations of DOC in annular wetland soil-water solutions to the geometry of closed depressions on a scale of small catchments. However, the DOC in soil pore water of the annular wetland may be the potential source of DOC to stream flow on watershed scale. These observations also implied the fragmentation of wetland landscape could bring the spatial-temporal variations of DOC distribution and exports, which would bring negative environmental impacts in watersheds of the Sanjiang Plain.

Process Inference from High Frequency Temporal Variations in Dissolved Organic Carbon (DOC) Dynamics Across Nested Spatial Scales

NASA Astrophysics Data System (ADS)

Tunaley, C.; Tetzlaff, D.; Lessels, J. S.; Soulsby, C.

2014-12-01

In order to understand aquatic ecosystem functioning it is critical to understand the processes that control the spatial and temporal variations in DOC. DOC concentrations are highly dynamic, however, our understanding at short, high frequency timescales is still limited. Optical sensors which act as a proxy for DOC provide the opportunity to investigate near-continuous DOC variations in order to understand the hydrological and biogeochemical processes that control concentrations at short temporal scales. Here we present inferred 15 minute stream water DOC data for a 12 month period at three nested scales (1km2, 3km2 and 31km2) for the Bruntland Burn, a headwater catchment in NE Scotland. High frequency data were measured using FDOM and CDOM probes which work by measuring the fluorescent component and coloured component, respectively, of DOC when exposed to ultraviolet light. Both FDOM and CDOM were strongly correlated (r2 >0.8) with DOC allowing high frequency estimations. Results show the close coupling of DOC with discharge throughout the sampling period at all three spatial scales. However, analysis at the event scale highlights anticlockwise hysteresis relationships between DOC and discharge due to the delay in DOC being flushed from the increasingly large areas of peaty soils as saturation zones expand and increase hydrological connectivity. Lag times vary between events dependent on antecedent conditions. During a 10 year drought period in late summer 2013 it was apparent that very small changes in discharge on a 15 minute timescale result in high increases in DOC. This suggests transport limitation during this period where DOC builds up in the soil and is not flushed regularly, therefore any subsequent increase in discharge results in large DOC peaks. The high frequency sensors also reveal diurnal variability during summer months related to the photo-oxidation, evaporative and biological influences of DOC during the day. This relationship is less significant during the winter months.

Dynamics, chemical properties and bioavailability of DOC in an early successional catchment

NASA Astrophysics Data System (ADS)

Risse-Buhl, U.; Hagedorn, F.; Dümig, A.; Gessner, M. O.; Schaaf, W.; Nii-Annang, S.; Gerull, L.; Mutz, M.

2013-01-01

The dynamics of dissolved organic carbon (DOC) have been intensively studied in mature ecosystems, but little is known about DOC dynamics and the significance of DOC as a substrate for microbial activity in early-successional catchments. We determined the concentration, chemical composition, source, radiocarbon age, and bioavailability of DOC along the hydrological flow path from soil solution to a downstream pond in a recently constructed catchment (Chicken Creek Catchment, Germany). Soil solution, upwelling ground water, subsurface water in an alluvial fan, and pond water all had high DOC concentrations (averages of 6.0-11.6 mg DOC L-1), despite small carbon stocks in either vegetation or soil of the early-successional catchment. The mean 14C age of DOC in upwelling ground water was 2600 to 2800 yr. Solid-state CPMAS 13C NMR revealed a higher proportion of aromatic compounds (32%) and a lower proportion of carbohydrates (33%) in upwelling ground water than in pond water (18% and 45%, respectively). The 14C age and 13C NMR spectra suggest that DOC was partly mobilized from charred organic matter of the Quaternary substrate. In an experimental 70-days incubation experiment, 20% of the total DOC was found to be bioavailable, irrespective of the water type. Origin of microbial communities (enriched from soil, stream sediment or pond water) had only marginal effects on overall DOC utilization. Overall, these data suggest that the old DOC can support microbial activity during early ecosystem succession to some extent, although the largest fraction is recalcitrant DOC that is exported from the catchment once it has been mobilized.

[Response of mineralization of dissolved organic carbon to soil moisture in paddy and upland soils in hilly red soil region].

PubMed

Chen, Xiang-Bi; Wang, Ai-Hua; Hu, Le-Ning; Huang, Yuan; Li, Yang; He, Xun-Yang; Su, Yi-Rong

2014-03-01

Typical paddy and upland soils were collected from a hilly subtropical red-soil region. 14C-labeled dissolved organic carbon (14C-DOC) was extracted from the paddy and upland soils incorporated with 14C-labeled straw after a 30-day (d) incubation period under simulated field conditions. A 100-d incubation experiment (25 degrees C) with the addition of 14C-DOC to paddy and upland soils was conducted to monitor the dynamics of 14C-DOC mineralization under different soil moisture conditions [45%, 60%, 75%, 90%, and 105% of the field water holding capacity (WHC)]. The results showed that after 100 days, 28.7%-61.4% of the labeled DOC in the two types of soils was mineralized to CO2. The mineralization rates of DOC in the paddy soils were significantly higher than in the upland soils under all soil moisture conditions, owing to the less complex composition of DOC in the paddy soils. The aerobic condition was beneficial for DOC mineralization in both soils, and the anaerobic condition was beneficial for DOC accumulation. The biodegradability and the proportion of the labile fraction of the added DOC increased with the increase of soil moisture (45% -90% WHC). Within 100 days, the labile DOC fraction accounted for 80.5%-91.1% (paddy soil) and 66.3%-72.4% (upland soil) of the cumulative mineralization of DOC, implying that the biodegradation rate of DOC was controlled by the percentage of labile DOC fraction.

Effects of microwave (2.45 GHz) irradiation on some biological characters of Salmonella typhimurium.

PubMed

Nasri, Kaouther; Daghfous, Douraid; Landoulsi, Ahmed

2013-04-01

The present study was carried out to evaluate the effects of sub-lethal doses of microwave radiation on some biological characteristics in Salmonella typhimurium. The aim was to show the relationship between this treatment and the development of radiotolerance in this pathogen because there is a need for more information on physiological responses of pathogens to sub-lethal doses of microwave radiation. So, the bacterial strain was treated with a dose of 3600J (40-s exposure with power P=90 W) to cause cellular damage. The results have shown that the exposure of bacteria to microwaves resulted in a significant inhibition of cellular growth. This treatment has notably increased the effectiveness of the most tested antibiotics by the amelioration or the appearance of sensitivity in exposed bacteria. Gas chromatography (GC) analysis was performed to demonstrate the modification of the fatty acids (FA) composition. Results obtained have shown that this treatment had a significant effect on the FA content with an increase of unsaturated FA percentage. The acquisition of sensitivity to the sodium deoxycholate and the significant increase in the amount of extracellular proteins in exposed bacteria has confirmed the weakening of the bacterial membrane by microwaves. This study represents one of the few demonstrating the modifications on the bacterial membrane as a cellular response to survive the non-ionising radiation stress. Copyright © 2013 Académie des sciences. Published by Elsevier SAS. All rights reserved.

Pre-formulation and systematic evaluation of amino acid assisted permeability of insulin across in vitro buccal cell layers

PubMed Central

Iyire, Affiong; Alayedi, Maryam; Mohammed, Afzal R.

2016-01-01

The aim of this work was to investigate alternative safe and effective permeation enhancers for buccal peptide delivery. Basic amino acids improved insulin solubility in water while 200 and 400 μg/mL lysine significantly increased insulin solubility in HBSS. Permeability data showed a significant improvement in insulin permeation especially for 10 μg/mL of lysine (p < 0.05) and 10 μg/mL histidine (p < 0.001), 100 μg/mL of glutamic acid (p < 0.05) and 200 μg/mL of glutamic acid and aspartic acid (p < 0.001) without affecting cell integrity; in contrast to sodium deoxycholate which enhanced insulin permeability but was toxic to the cells. It was hypothesized that both amino acids and insulin were ionised at buccal cavity pH and able to form stable ion pairs which penetrated the cells as one entity; while possibly triggering amino acid nutrient transporters on cell surfaces. Evidence of these transport mechanisms was seen with reduction of insulin transport at suboptimal temperatures as well as with basal-to-apical vectoral transport, and confocal imaging of transcellular insulin transport. These results obtained for insulin are the first indication of a possible amino acid mediated transport of insulin via formation of insulin-amino acid neutral complexes by the ion pairing mechanism. PMID:27581177

Benthic fluxes of dissolved organic carbon from gas hydrate sediments in the northern South China Sea

PubMed Central

Hung, Chia-Wei; Huang, Kuo-Hao; Shih, Yung-Yen; Lin, Yu-Shih; Chen, Hsin-Hung; Wang, Chau-Chang; Ho, Chuang-Yi; Hung, Chin-Chang; Burdige, David J.

2016-01-01

Hydrocarbon vents have recently been reported to contribute considerable amounts of dissolved organic carbon (DOC) to the oceans. Many such hydrocarbon vents widely exist in the northern South China Sea (NSCS). To investigate if these hydrocarbon vent sites release DOC, we used a real-time video multiple-corer to collect bottom seawater and surface sediments at vent sites. We analyzed concentrations of DOC in these samples and estimated DOC fluxes. Elevated DOC concentrations in the porewaters were found at some sites suggesting that DOC may come from these hydrocarbon vents. Benthic fluxes of DOC from these sediments were 28 to 1264 μmol m−2 d−1 (on average ~321 μmol m−2 d−1) which are several times higher than most DOC fluxes in coastal and continental margin sediments. The results demonstrate that the real-time video multiple-corer can precisely collect samples at vent sites. The estimated benthic DOC flux from the methane venting sites (8.6 × 106 mol y−1), is 24% of the DOC discharge from the Pearl River to the South China Sea, indicating that these sediments make an important contribution to the DOC in deep waters. PMID:27432631

Web-based Loansome Doc, librarians, and end users: results from a survey of the Southeast Region.

PubMed

Paden, S L; Batson, A L; Wallace, R L

2001-07-01

The study examines how Loansome Doc services are implemented and used by libraries in the Southeast Region and describe end users' experiences with and attitudes toward Loansome Doc. 251 active DOCLINE libraries and 867 Loansome Doc users were surveyed. Roughly one half of the libraries offered Loansome Doc services. Of those that did not, most indicated no plans to offer it in the future. The majority had a small number of end users and experienced minimal increases in interlibrary loan activity. Problems were relatively rare. Satisfaction with Loansome Doc was high among all types of libraries. End users were usually physicians or other health care professionals who requested articles for research and patient care. Most learned about Loansome Doc through PubMed or Internet Grateful Med. End users appeared to be largely self-taught or received informal instruction in Loansome Doc. Loansome Doc filled document requests in a timely manner, and end users reported being satisfied with the service. Greater promotion of what Loansome Doc is and how it can benefit libraries can increase the number of participating libraries. While satisfaction of Loansome Doc end users is high, satisfaction could be increased with more help on the PubMed screen, more library training, and faster delivery methods.

Inverse coupling of DOC and nitrate export from soils and streams

NASA Astrophysics Data System (ADS)

Goodale, Christine

2013-04-01

Over the last two decades, nitrate concentrations in surface waters have decreased across the Northeastern United States and parts of northern Europe. Many hypotheses have been proposed to explain this decrease, but the cause remains unclear. One control may be associated with increasing abundance of dissolved organic carbon (DOC), which in turn may be a result of soil recovery from acidification. Compared across catchments, surface water NO3- decreases sharply with increasing DOC concentration. Here, we used measurements of soil and solution nitrate, DOC, and their isotopic composition (13C-DOC, 15N- and 18O-NO3) to test several related hypotheses that changing acidification affects the release of DOC and bio-available DOC (bDOC) from soil, and that variation in stocks of soil C and release of bDOC partly control NO3- export from forested catchments in New York State, USA. We examined whether DOC and NO3- are both driven by soil C processes that produce inverse coupling at the scale of soil cores as well as across catchments, through comparison of soil and surface water chemistry across nine catchments selected from long-term monitoring networks in the Catskill and Adirondack Mountains. In addition, we conducted a series of soil core leaching experiments to examine the role of acidification and recovery in driving the net production of DOC and NO3- from soils. Over 8 months, soil cores were leached biweekly with simulated rainfall solutions of varying pH (3.6 to 7.0) from additions of H2SO4, CaCO3 and NaOH. These experiments did not yield a pH-induced change in DOC quantity, but did show a change in DOC quality, in that acidified cores released more bio-available DOC with less depleted 13C-DOC than cores with experimentally increased pH. All cores leached substantial amounts of nitrate. Together, these lab- and field comparisons are being used to identify the role of soil production and consumption processes in driving cross-watershed differences in DOC and NO3- loss, or whether other factors (e.g., riparian, in-stream or hydrologic processes) likely explain this relationship.

An investigation of size-fractionated organic matter from Lake Superior and a tributary stream using radiocarbon, stable isotopes and NMR

NASA Astrophysics Data System (ADS)

Zigah, Prosper K.; Minor, Elizabeth C.; Abdulla, Hussain A. N.; Werne, Josef P.; Hatcher, Patrick G.

2014-02-01

This study investigated the concentration and isotopic composition of different size fractions of organic matter (OM) in Lake Superior and in one of its many tributary streams and rivers (Amity Creek, Duluth, Minnesota, USA). Structural compositional drivers of the Δ14C of high molecular weight (HMW, >1 kDa) dissolved organic carbon (DOC) in the lake were also evaluated. Low molecular weight (LMW, <1 kDa) DOC was the fraction containing the largest proportion (68-88%) of organic carbon (OC) in the lake. Particulate organic carbon (POC, >0.7 μm) was generally 13C-depleted (-29 ± 1.2‰) relative to “bulk” (<0.7 μm) DOC (-26.4 ± 0.7‰), “init” (<0.2 μm) DOC (-26.6 ± 0.8‰), HMW DOC (-26.9 ± 0.3‰) and LMW DOC (-26.5 ± 0.9‰), and had more variable 14C content (Δ14C of -94‰ to 53‰; 735 years BP to modern) than the other size fractions. Init DOC (Δ14C of 17-59‰), HMW DOC (Δ14C of 23-64‰) and LMW DOC (Δ14C of 16-62‰) all reflected contemporary (modern) radiocarbon signatures. Bulk DOC (Δ14C of -19‰ to 57‰; 90 years BP to modern) had modern radiocarbon values in the offshore sites (Δ14C of 2-57‰) with pre-aged samples (Δ14C of -8‰ to -19‰) seen at the nearshore site. HMW DOM was relatively N-poor (C:N of 12-19) compared to particulate organic matter (POM, C:N of 8-10) revealing either a more diagenetically altered state or contrasting sources. 13C NMR data showed that biochemical composition of HMW DOC in Lake Superior was dominated by carbohydrates (53-65%) with only trace aromatic components (2-4%). Structurally complex components such as heteropolysaccharides (HPS), amide/peptides and amino sugars (AMS) constitute 75-84% of HMW DOC whereas carboxylic-rich alicyclic molecules (CRAM) made up 16-25% of HMW DOC in the lake. Combined HPS and AMS, O-alkyl carbohydrate carbon, and total carbohydrate carbon contents were significantly positively correlated to the Δ14C of HMW DOC suggesting they contribute a contemporary 14C-enriched component to the HMW DOC in the lake. In contrast, CRAM and aliphatic carbons were significantly inversely correlated with Δ14C of HMW DOC implying that these represent 14C-depleted (older) components of HMW DOC in the lake. At Amity Creek, storm events led to larger loads of bulk DOC and POC, which were both 14C-enriched (modern). However, in baseflow conditions 14C-depleted bulk DOC and POC were exported. LMW DOC from the creek was considerably 14C-depleted compared to concurrent HMW DOC.

Transformation of molecular weight distributions of dissolved organic carbon and UV-absorbing compounds at full-scale wastewater-treatment plants.

PubMed

Esparza-Soto, Mario; Fox, Peter; Westerhoff, Paul

2006-03-01

The molecular-weight distribution (MWD) of wastewater dissolved-organic carbon (DOC) was determined in samples from seven full-scale wastewater-treatment plants (WWTPs) that use different biological treatments (air activated sludge [air-AS], pure-oxygen AS [O2-AS], and trickling filters). The research objective was to determine how different biological treatments influenced the MWD of wastewater DOC. Primary sedimentation effluent DOC from most of the WWTPs exhibited a skewed distribution toward the low-molecular-weight fraction (MWF) (40 to 50%, < 0.5 K Daltons [KDa]). The Air-AS effluent DOC exhibited a centrally clustered distribution, with the majority of DOC in the intermediate MWF (0.5 to 3 KDa). The O2-AS effluent DOC exhibited a skewed distribution toward the high MWF (> 3 KDa). The removal of DOC by air- and O2-AS bacteria followed trends predicted by a macromolecule degradation model. Trickling-filter effluent DOC exhibited a skewed distribution toward the high MWF (50% DOC, > 3 KDa).

Humic substances-part 7: the biogeochemistry of dissolved organic carbon and its interactions with climate change.

PubMed

Porcal, Petr; Koprivnjak, Jean-François; Molot, Lewis A; Dillon, Peter J

2009-09-01

Dissolved organic matter, measured as dissolved organic carbon (DOC), is an important component of aquatic ecosystems and of the global carbon cycle. It is known that changes in DOC quality and quantity are likely to have ecological repercussions. This review has four goals: (1) to discuss potential mechanisms responsible for recent changes in aquatic DOC concentrations; (2) to provide a comprehensive overview of the interactions between DOC, nutrients, and trace metals in mainly boreal environments; (3) to explore the impact of climate change on DOC and the subsequent effects on nutrients and trace metals; and (4) to explore the potential impact of DOC cycling on climate change. We review recent research on the mechanisms responsible for recent changes in aquatic DOC concentrations, DOC interactions with trace metals, N, and P, and on the possible impacts of climate change on DOC in mainly boreal lakes. We then speculate on how climate change may affect DOC export and in-lake processing and how these changes might alter nutrient and metal export and processing. Furthermore, the potential impacts of changing DOC cycling patterns on climate change are examined. It has been noted that DOC concentrations in lake and stream waters have increased during the last 30 years across much of Europe and North America. The potential reasons for this increase include increasing atmospheric CO(2) concentration, climate warming, continued N deposition, decreased sulfate deposition, and hydrological changes due to increased precipitation, droughts, and land use changes. Any change in DOC concentrations and properties in lakes and streams will also impact the acid-base chemistry of these waters and, presumably, the biological, chemical, and photochemical reactions taking place. For example, the interaction of trace metals with DOC may be significantly altered by climate change as organically complexed metals such as Cu, Fe, and Al are released during photo-oxidation of DOC. The production and loss of DOC as CO(2) from boreal lakes may also be affected by changing climate. Climate change is unlikely to be uniform spatially with some regions becoming wetter while others become drier. As a result, rates of change in DOC export and concentrations will vary regionally and the changes may be non-linear. Climate change models predict that higher temperatures are likely to occur over most of the boreal forests in North America, Europe, and Asia over the next century. Climate change is also expected to affect the severity and frequency of storm and drought events. Two general climate scenarios emerge with which to examine possible DOC trends: warmer and wetter or warmer and drier. Increasing temperature and hydrological changes (specifically, runoff) are likely to lead to changes in the quality and quantity of DOC export from terrestrial sources to rivers and lakes as well as changes in DOC processing rates in lakes. This will alter the quality and concentrations of DOC and its constituents as well as its interactions with trace metals and the availability of nutrients. In addition, export rates of nutrients and metals will also change in response to changing runoff. Processing of DOC within lakes may impact climate depending on the extent to which DOC is mineralized to dissolved inorganic carbon (DIC) and evaded to the atmosphere or settles as particulate organic carbon (POC) to bottom sediments and thereby remaining in the lake. The partitioning of DOC between sediments and the atmosphere is a function of pH. Decreased DOC concentrations may also limit the burial of sulfate, as FeS, in lake sediments, thereby contributing acidity to the water by increasing the formation of H(2)S. Under a warmer and drier scenario, if lake water levels fall, previously stored organic sediments may be exposed to greater aeration which would lead to greater CO(2) evasion to the atmosphere. The interaction of trace metals with DOC may be significantly altered by climate change. Iron enhances the formation of POC during irradiation of lake water with UV light and therefore may be an important pathway for transfer of allochthonous DOC to the sediments. Therefore, changing Fe/DOC ratios could affect POC formation rates. If climate change results in altered DOC chemistry (e.g., fewer and/or weaker binding sites) more trace metals could be present in their toxic and bioavailable forms. The availability of nutrients may be significantly altered by climate change. Decreased DOC concentrations in lakes may result in increased Fe colloid formation and co-incident loss of adsorbable P from the water column. Climate change expressed as changes in runoff and temperature will likely result in changes in aquatic DOC quality and concentration with concomitant effects on trace metals and nutrients. Changes in the quality and concentration of DOC have implications for acid-base chemistry and for the speciation and bioavailability of certain trace metals and nutrients. Moreover, changes in DOC, metals, and nutrients are likely to drive changes in rates of C evasion and storage in lake sediments. The key controls on allochthonous DOC quality, quantity, and catchment export in response to climate change are still not fully understood. More detailed knowledge of these processes is required so that changes in DOC and its interactions with nutrients and trace metals can be better predicted based on changes caused by changing climate. More studies are needed concerning the effects of trace metals on DOC, the effects of changing DOC quality and quantity on trace metals and nutrients, and how runoff and temperature-related changes in DOC export affect metal and nutrient export to rivers and lakes.

Dissolved Organic Carbon 14C in Southern Nevada Groundwater and Implications for Groundwater Travel Times

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hershey, Ronald L.; Fereday, Wyall; Thomas, James M

Dissolved inorganic carbon (DIC) carbon-14 ( 14C) ages must be corrected for complex chemical and physical reactions and processes that change the amount of 14C in groundwater as it flows from recharge to downgradient areas. Because of these reactions, DIC 14C can produce unrealistically old ages and long groundwater travel times that may, or may not, agree with travel times estimated by other methods. Dissolved organic carbon (DOC) 14C ages are often younger than DIC 14C ages because there are few chemical reactions or physical processes that change the amount of DOC 14C in groundwater. However, there are several issuesmore » that create uncertainty in DOC 14C groundwater ages including limited knowledge of the initial (A 0) DOC 14C in groundwater recharge and potential changes in DOC composition as water moves through an aquifer. This study examines these issues by quantifying A 0 DOC 14C in recharge areas of southern Nevada groundwater flow systems and by evaluating changes in DOC composition as water flows from recharge areas to downgradient areas. The effect of these processes on DOC 14C groundwater ages is evaluated and DOC and DIC 14C ages are then compared along several southern Nevada groundwater flow paths. Twenty-seven groundwater samples were collected from springs and wells in southern Nevada in upgradient, midgradient, and downgradient locations. DOC 14C for upgradient samples ranged from 96 to 120 percent modern carbon (pmc) with an average of 106 pmc, verifying modern DOC 14C ages in recharge areas, which decreases uncertainty in DOC 14C A 0 values, groundwater ages, and travel times. The HPLC spectra of groundwater along a flow path in the Spring Mountains show the same general pattern indicating that the DOC compound composition does not change along this flow path. Although DOC concentration decreases from recharge-area to downgradient groundwater, the organic compounds are similar, indicating that DOC 14C is unaffected by other processes such as microbial degradation. A small amount of organic carbon was leached from crushed volcanic and carbonate aquifer outcrop rock in rock-leaching experiments. The leached DOC was high in 14C (75 pmc carbonate rocks, 91 pmc volcanic) suggesting that the leached DOC likely came from microbes in the rock samples. The small amount of DOC and high 14C indicates that the amount of old organic carbon in these rocks is low so there should be minimal impact on groundwater DOC 14C ages. Based on the results from this study, DOC 14C ages do not require additional corrections. Several correction models were applied to DIC 14C ages to correct for water-rock reactions along two carbonate and two volcanic flow paths and the corresponding travel times were compare to DOC 14C travel times. The DOC 14C travel times were hundreds to thousands of years shorter than uncorrected and corrected DIC 14C travel times except for the upper section of one carbonate flow path. DOC 14C travel times ranged from 400 to 5,400 years as compared to DIC 14C that ranged from modern to 20,900 years. The DIC 14C ages are greatly influenced by carbonate mineral and gas reactions and other processes such as matrix diffusion, isotope exchange, or adsorption, which are not always adequately accounted for in DIC 14C groundwater age correction models.« less

Variable flushing mechanisms and landscape structure control stream DOC export during snowmelt in a set of nested catchments

Treesearch

Vincent J. Pacific; Kelsey G. Jencso; Brian L. McGlynn

2010-01-01

Stream DOC dynamics during snowmelt have been the focus of much research, and numerous DOC mobilization and delivery mechanisms from riparian and upland areas have been proposed. However, landscape structure controls on DOC export from riparian and upland landscape elements remains poorly understood. We investigated stream and groundwater DOC dynamics across three...

Dissolved Organic Carbon along the Louisiana coast from MODIS and MERIS satellite data

NASA Astrophysics Data System (ADS)

Chaichi Tehrani, N.; D'Sa, E. J.

2012-12-01

Dissolved organic carbon (DOC) plays a critical role in the coastal and ocean carbon cycle. Hence, it is important to monitor and investigate its the distribution and fate in coastal waters. Since DOC cannot be measured directly through satellite remote sensors, chromophoric dissolved organic matter (CDOM) as an optically active fraction of DOC can be used as an alternative proxy to trace DOC concentrations. Here, satellite ocean color data from MODIS, MERIS, and field measurements of CDOM and DOC were used to develop and assess CDOM and DOC ocean color algorithms for coastal waters. To develop a CDOM retrieval algorithm, empirical relationships between CDOM absorption coefficient at 412 nm (aCDOM(412)) and reflectance ratios Rrs(488)/Rrs(555) for MODIS and Rrs(510)/Rrs(560) for MERIS were established. The performance of two CDOM empirical algorithms were evaluated for retrieval of (aCDOM(412)) from MODIS and MERIS in the northern Gulf of Mexico. Further, empirical algorithms were developed to estimate DOC concentration using the relationship between in situ aCDOM(412) and DOC, as well as using the newly developed CDOM empirical algorithms. Accordingly, our results revealed that DOC concentration was strongly correlated to aCDOM (412) for summer and spring-winter periods (r2 = 0.9 for both periods). Then, using the aCDOM(412)-Rrs and the aCDOM(412)-DOC relationships derived from field measurements, a relationship between DOC-Rrs was established for MODIS and MERIS data. The DOC empirical algorithms performed well as indicated by match-up comparisons between satellite estimates and field data (R2=0.52 and 0.58 for MODIS and MERIS for summer period, respectively). These algorithms were then used to examine DOC distribution along the Louisiana coast.

Hydrological controls on DOC  :  nitrate resource stoichiometry in a lowland, agricultural catchment, southern UK

NASA Astrophysics Data System (ADS)

Heppell, Catherine M.; Binley, Andrew; Trimmer, Mark; Darch, Tegan; Jones, Ashley; Malone, Ed; Collins, Adrian L.; Johnes, Penny J.; Freer, Jim E.; Lloyd, Charlotte E. M.

2017-09-01

The role that hydrology plays in governing the interactions between dissolved organic carbon (DOC) and nitrogen in rivers draining lowland, agricultural landscapes is currently poorly understood. In light of the potential changes to the production and delivery of DOC and nitrate to rivers arising from climate change and land use management, there is a pressing need to improve our understanding of hydrological controls on DOC and nitrate dynamics in such catchments. We measured DOC and nitrate concentrations in river water of six reaches of the lowland river Hampshire Avon (Wiltshire, southern UK) in order to quantify the relationship between BFI (BFI) and DOC : nitrate molar ratios across contrasting geologies (Chalk, Greensand, and clay). We found a significant positive relationship between nitrate and BFI (p < 0. 0001), and a significant negative relationship between DOC and BFI (p < 0. 0001), resulting in a non-linear negative correlation between DOC : nitrate molar ratio and BFI. In the Hampshire Avon, headwater reaches which are underlain by clay and characterized by a more flashy hydrological regime are associated with DOC : nitrate ratios > 5 throughout the year, whilst groundwater-dominated reaches underlain by Chalk, with a high BFI have DOC : nitrate ratios in surface waters that are an order of magnitude lower (< 0.5). Our analysis also reveals significant seasonal variations in DOC : nitrate transport and highlights critical periods of nitrate export (e.g. winter in sub-catchments underlain by Chalk and Greensand, and autumn in drained, clay sub-catchments) when DOC : nitrate molar ratios are low, suggesting low potential for in-stream uptake of inorganic forms of nitrogen. Consequently, our study emphasizes the tight relationship between DOC and nitrate availability in agricultural catchments, and further reveals that this relationship is controlled to a great extent by the hydrological setting.

Algorithm Development and Validation for Satellite-Derived Distributions of DOC and CDOM in the US Middle Atlantic Bight

NASA Technical Reports Server (NTRS)

Mannino, Antonio; Russ, Mary E.; Hooker, Stanford B.

2007-01-01

In coastal ocean waters, distributions of dissolved organic carbon (DOC) and chromophoric dissolved organic matter (CDOM) vary seasonally and interannually due to multiple source inputs and removal processes. We conducted several oceanographic cruises within the continental margin of the U.S. Middle Atlantic Bight (MAB) to collect field measurements in order to develop algorithms to retrieve CDOM and DOC from NASA's MODIS-Aqua and SeaWiFS satellite sensors. In order to develop empirical algorithms for CDOM and DOC, we correlated the CDOM absorption coefficient (a(sub cdom)) with in situ radiometry (remote sensing reflectance, Rrs, band ratios) and then correlated DOC to Rrs band ratios through the CDOM to DOC relationships. Our validation analyses demonstrate successful retrieval of DOC and CDOM from coastal ocean waters using the MODIS-Aqua and SeaWiFS satellite sensors with mean absolute percent differences from field measurements of < 9 %for DOC, 20% for a(sub cdom)(355)1,6 % for a(sub cdom)(443), and 12% for the CDOM spectral slope. To our knowledge, the algorithms presented here represent the first validated algorithms for satellite retrieval of a(sub cdom) DOC, and CDOM spectral slope in the coastal ocean. The satellite-derived DOC and a(sub cdom) products demonstrate the seasonal net ecosystem production of DOC and photooxidation of CDOM from spring to fall. With accurate satellite retrievals of CDOM and DOC, we will be able to apply satellite observations to investigate interannual and decadal-scale variability in surface CDOM and DOC within continental margins and monitor impacts of climate change and anthropogenic activities on coastal ecosystems.

The Age of Terrestrial Carbon Export and Rainfall Intensity in a Temperate River Headwater System

NASA Astrophysics Data System (ADS)

Tittel, J.; Büttner, O.; Freier, K.; Heiser, A.; Sudbrack, R.; Ollesch, G.

2013-12-01

Riverine dissolved organic carbon (DOC) supports the production of estuaries and coastal ecosystems, constituting one of the most actively recycled pools of the global carbon cycle. A substantial proportion of DOC entering oceans is highly aged, but its origins remain unclear. Significant fluxes of old DOC have never been observed in temperate headwaters where terrestrial imports take place. Here, we studied the radiocarbon age of DOC in three streams draining forested headwater catchments of the river Mulde (Ore Mountains, Germany). We found modern DOC at moderately dry and moderately wet conditions as well as at high discharges during snowmelt. Old groundwater carbon contributed to stream DOC during the summer drought, although the yield was negligible. However, in a four-week summer precipitation event DOC aged at between 160 and 270 years was delivered into the watershed. In one stream, the DOC was modern but depleted in radiocarbon compared to other hydrological conditions. The yield was substantial and corresponded to 20 to 52% of the annual DOC yields in wet and dry years, respectively. Time-integrating samples of a downstream reservoir also revealed modern DOC ages under moderate conditions and old DOC from the rainfall event. Earlier studies suggested that increasing precipitation escalates the contribution of modern DOC from topsoil layers to surface runoff. Our results demonstrate a step change occurring if rainfall intensities increase and become extreme; then the consequences lead to the mobilization of old carbon in exceptionally high concentrations. The runoff/precipitation ratios of rainfall events indicated that during extreme events upland areas of the catchments were hydrologically connected to the stream and upland DOC was activated. Furthermore, the analysis of long-term data suggested that the DOC export in extreme precipitation events added to the annual yield and was not compensated for by lower exports in remaining periods. We conclude that climate change, along with additional processes associated with human activities, channels old soil carbon into more rapidly cycled carbon pools of the hydrosphere.

The influence of dissolved organic carbon on bacterial phosphorus uptake and bacteria-phytoplankton dynamics in two Minnesota lakes

USGS Publications Warehouse

Stets, E.G.; Cotner, J.B.

2008-01-01

The balance of production in any ecosystem is dependent on the flow of limiting nutrients into either the autotrophic or heterotrophic components of the food web. To understand one of the important controls on the flow of inorganic nutrients between phytoplankton and bacterioplankton in lakes, we manipulated dissolved organic carbon (DOC) in two lakes of different trophic status. We hypothesized that labile DOC additions would increase bacterial phosphorus (P) uptake and decrease the response of phytoplankton to nutrient additions. Supplemental nutrients and carbon (C), nitrogen (N, 1.6 ??mol NH4Cl L-1 d-1), P (0.1 ??mol KH 2PO4 L-1 d-1), and DOC (glucose, 15 ??mol C L-1 d-1) were added twice daily to 8-liter experimental units. We tested the effect of added DOC on chlorophyll concentration, bacterial production, biomass, and P uptake using size-fractionated 33P-PO4 uptake. In the oligotrophic lake, DOC additions stimulated bacterial production and increased bacterial biomass-specific P uptake. Bacteria consumed added DOC, and chlorophyll concentrations were significantly lower in carboys receiving DOC additions. In the eutrophic lake, DOC additions had less of a stimulatory effect on bacterial production and biomass-specific P uptake. DOC accumulated over the time period, and there was little evidence for a DOC-induced decrease in phytoplankton biomass. Bacterial growth approached the calculated ??max and yet did not accumulate biomass, indicating significant biomass losses, which may have constrained bacterial DOC consumption. Excess bacterial DOC consumption in oligotrophic lakes may result in greater bacterial P affinity and enhanced nutrient uptake by the heterotrophic compartment of the food web. On the other hand, constraints on bacterial biomass accumulation in eutrophic lakes, from either viral lysis or bacterial grazing, can allow labile DOC to accumulate, thereby negating the effect of excess DOC on the planktonic food web. ?? 2008, by the American Society of Limnology and Oceanography, Inc.

Impact of wetland decline on decreasing dissolved organic carbon concentrations along the Mississippi River continuum

DOE Office of Scientific and Technical Information (OSTI.GOV)

Duan, Shuiwang; He, Yuxiang; Kaushal, Sujay S.

Prior to discharging to the ocean, large rivers constantly receive inputs of dissolved organic carbon (DOC) from tributaries or fringing floodplains and lose DOC via continuous in situ processing along distances that span thousands of kilometers. Current concepts predicting longitudinal changes in DOC mainly focus on in situ processing or exchange with fringing floodplain wetlands, while effects of heterogeneous watershed characteristics are generally ignored. We analyzed results from a 17-year time-series of DOC measurements made at seven sites and three expeditions along the entire Mississippi River main channel with DOC measurements made every 17 km. The results show a clearmore » downstream decrease in DOC concentrations that was consistent throughout the entire study period. Downstream DOC decreases were primarily (~63–71%) a result of constant dilutions by low-DOC tributary water controlled by watershed wetland distribution, while in situ processing played a secondary role. We estimate that from 1780 to 1980 wetland loss due to land-use alterations caused a ca. 58% decrease in in DOC concentrations in the tributaries of the Mississippi River. DOC reductions caused by watershed wetland loss likely impacted the capacity for the river to effectively remove nitrogen via denitrification, which can further exacerbate coastal hypoxia. Lastly, these findings highlight the importance of watershed wetlands in regulating DOC longitudinally along the headland to ocean continuum of major rivers.« less

Impact of wetland decline on decreasing dissolved organic carbon concentrations along the Mississippi River continuum

DOE PAGES

Duan, Shuiwang; He, Yuxiang; Kaushal, Sujay S.; ...

2017-01-09

Prior to discharging to the ocean, large rivers constantly receive inputs of dissolved organic carbon (DOC) from tributaries or fringing floodplains and lose DOC via continuous in situ processing along distances that span thousands of kilometers. Current concepts predicting longitudinal changes in DOC mainly focus on in situ processing or exchange with fringing floodplain wetlands, while effects of heterogeneous watershed characteristics are generally ignored. We analyzed results from a 17-year time-series of DOC measurements made at seven sites and three expeditions along the entire Mississippi River main channel with DOC measurements made every 17 km. The results show a clearmore » downstream decrease in DOC concentrations that was consistent throughout the entire study period. Downstream DOC decreases were primarily (~63–71%) a result of constant dilutions by low-DOC tributary water controlled by watershed wetland distribution, while in situ processing played a secondary role. We estimate that from 1780 to 1980 wetland loss due to land-use alterations caused a ca. 58% decrease in in DOC concentrations in the tributaries of the Mississippi River. DOC reductions caused by watershed wetland loss likely impacted the capacity for the river to effectively remove nitrogen via denitrification, which can further exacerbate coastal hypoxia. Lastly, these findings highlight the importance of watershed wetlands in regulating DOC longitudinally along the headland to ocean continuum of major rivers.« less

Determination of an organic-acid analog of DOC for use in copper toxicity studies on salmonids

DOE Office of Scientific and Technical Information (OSTI.GOV)

MacRae, R.K.; Meyer, J.S.; Hansen, J.A.

1995-12-31

Concentrations of dissolved copper in streams draining mine sites often exceed concentrations shown to cause acute and chronic mortality in salmonids. However, toxicity and impaired behaviors may be modified by dissolved organic carbon (DOC) and other inorganic components present in the site water. The effects of DOC on copper speciation, and thus bioavailability and toxicity, were determined by titrating stream waters with copper, using a cupric ion-specific electrode to detect free copper concentrations. Effects of various competing cations (e.g., Ca{sup +2}, Co{sup +2}) on copper-DOC binding were also evaluated. Titration results were evaluated using Scatchard and non-linear regression analyses tomore » quantify the strength and capacity of copper-DOC binding. Inorganic speciation was determined using the geochemical model MINEQL{sup +}. Results of these titrations indicated the presence of two or three distinct copper binding components in site water DOC. Three commercially available organic acids where then chosen to mimic the binding characteristics of natural DOC. This DOC-analog was used successfully in fish toxicity studies to evaluate the influence of DOC on copper bioavailability. Geochemical models were developed to predict copper speciation in both laboratory test waters and site waters, for any typical combination of water chemistry parameters (pH, alkalinity, [DOC], etc.). A combined interpretation of fish toxicity and modeling results indicate that some DOC-bound copper was bioavailable.« less

Transformations and Fates of Terrigenous Dissolved Organic Matter in River-influenced Ocean Margins

NASA Astrophysics Data System (ADS)

Fichot, Cedric G.

Rivers contribute about 0.25 Pg of terrigenous dissolved organic carbon (tDOC) to the ocean each year. The fate and transformations of this material have important ramifications for the metabolic state of the ocean, air-sea CO2 exchange, and the global carbon cycle. Stable isotopic compositions and terrestrial biomarkers suggest tDOC must be efficiently mineralized in ocean margins. Nonetheless, the extent of tDOC mineralization in these environments remains unknown, as no quantitative estimate is available. The complex interplay of biogeochemical and physical processes in these systems compounded by the limited practicality of chemical proxies (organic biomarkers, isotopic compositions) make the quantification of tDOC mineralization in these dynamic systems particularly challenging. In this dissertation, new optical proxies were developed (Chapters 1 and 2) and facilitated the first quantitative assessment of tDOC mineralization in a dynamic river-influenced ocean margin (Chapter 3) and the monitoring of continental runoff distributions in the coastal ocean using remote sensing (Chapter 4). The optical properties of chromophoric dissolved organic matter (CDOM) were used as optical proxies for dissolved organic carbon concentration ([DOC]) and %tDOC. In both proxies, the CDOM spectral slope coefficient ( S275-295) was exploited for its informative properties on the chemical nature and composition of dissolved organic matter. In the first proxy, a strong relationship between S275-295 and the ratio of CDOM absorption to [DOC] facilitated accurate retrieval (+/- 4%) of [DOC] from CDOM. In the second proxy, the existence of a strong relationship between S275-295 and the DOC-normalized lignin yield facilitated the estimation of the %tDOC from S 275-295. Using the proxies, the tDOC concentration can be retrieved solely from CDOM absorption coefficients (lambda = 275-295 nm) in river-influenced ocean margins. The practicality of optical proxies facilitated the calculation of tDOC mineralization rates on the Louisiana shelf. Seasonal tDOC mass balances for the shelf revealed that between 26% (winter) and 71% (summer) of the mixed layer tDOC is mineralized during its residence on the shelf. Independent approaches further indicated biomineralization accounts for 60% of the tDOC mineralization whereas photomineralization contributes only 8%. The remaining 32% was attributed to the coupled photo-biomineralization. On an annual basis, our results indicated ˜40% of the tDOC discharged by the Mississippi and Atchafalaya rivers to the Louisiana shelf (˜1 Tg tDOC) is mineralized within 2 to 3 months. This extensive mineralization on the shelf is direct evidence ocean margins act as efficient filters of tDOC between the land and ocean. Finally, the amenability of S275-295 to ocean color remote sensing was demonstrated, and facilitates the real-time, synoptic monitoring of tDOC and freshwater runoff in coastal waters. Implementation of this approach provided the first pan-Arctic distributions of tDOC and continental runoff in surface polar waters, and will help understand the manifestations of climate change in this remote region.

Concentrations and characteristics of organic carbon in surface water in Arizona: Influence of urbanization

USGS Publications Warehouse

Westerhoff, P.; Anning, D.

2000-01-01

Dissolved (DOC) and total (TOC) organic carbon concentrations and compositions were studied for several river systems in Arizona, USA. DOC composition was characterized by ultraviolet and visible absorption and fluorescence emission (excitation wavelength of 370 nm) spectra characteristics. Ephemeral sites had the highest DOC concentrations, and unregulated perennial sites had lower concentrations than unregulated intermittent sites, regulated sites, and sites downstream from wastewater-treatment plants (p < 0.05). Reservoir outflows and wastewater-treatment plant effluent were higher in DOC concentration (p < 0.05) and exhibited less variability in concentration than inflows to the reservoirs. Specific ultraviolet absorbance values at 254 nm were typically less than 2 m-1(milligram DOC per liter)-1 and lower than values found in most temperate-region rivers, but specific ultraviolet absorbance values increased during runoff events. Fluorescence measurements indicated that DOC in desert streams typically exhibit characteristics of autochthonous sources; however, DOC in unregulated upland rivers and desert streams experienced sudden shifts from autochthonous to allochthonous sources during runoff events. The urban water system (reservoir systems and wastewater-treatment plants) was found to affect temporal variability in DOC concentration and composition. (C) 2000 Elsevier Science B.V.Dissolved (DOC) and total (TOC) organic carbon concentrations and compositions were studied for several river systems in Arizona, USA. DOC composition was characterized by ultraviolet and visible absorption and fluorescence emission (excitation wavelength of 370 nm) spectra characteristics. Ephemeral sites had the highest DOC concentrations, and unregulated perennial sites had lower concentrations than unregulated intermittent sites, regulated sites, and sites downstream from wastewater-treatment plants (p<0.05). Reservoir outflows and wastewater-treatment plant effluent were higher in DOC concentration (p<0.05) and exhibited less variability in concentration than inflows to the reservoirs. Specific ultraviolet absorbance values at 254 nm were typically less than 2 m-1(milligram DOC per liter)-1 and lower than values found in most temperate-region rivers, but specific ultraviolet absorbance values increased during runoff events. Fluorescence measurements indicated that DOC in desert streams typically exhibit characteristics of autochthonous sources; however, DOC in unregulated upland rivers and desert streams experienced sudden shifts from autochthonous to allochthonous sources during runoff events. The urban water system (reservoir systems and wastewater-treatment plants) was found to affect temporal variability in DOC concentration and composition.The influence of urbanization, becoming increasingly common in arid regions, on dissolved organic carbon (DOC) concentrations in surface water resources was studied. DOC concentration and composition, seasonal watershed runoff events, streamflow variations, water management practices, and urban infrastructure in several Arizona watersheds were monitored. Ephemeral sites had the highest DOC levels, and unregulated perennial sites and lower concentrations than unregulated intermittent sites, regulated sites, and sites downstream from wastewater treatment plants. Reservoir outflows and wastewater treatment plant effluent had higher and less variable DOC concentrations than inflows to reservoirs. UV absorbance values, fluorescence measurements, and other indicators suggest that urban water systems (reservoirs and wastewater treatment plants) affect temporal variability in DOC concentration and composition.

How to study picosecond solvation dynamics using fluorescent probes with small Stokes shifts

NASA Astrophysics Data System (ADS)

Silori, Yogita; Dey, Shivalee; De, Arijit K.

2018-02-01

Xanthene dyes have wide ranging applications as fluorescent probes in analytical, biochemical and medical contexts. Being cationic/anionic in nature, the solvation dynamics of xanthene dyes confined within a negatively/positively charged interface are very interesting. Unfortunately, the floppy structure and small Stokes shift render any xanthene dye unsuitable for use as a solvation probe. Using di-sodium fluorescein, we present our work on the picosecond solvation dynamics of bulk and confined water (at pH = 9.2). We also propose a new methodology for studying picosecond solvation dynamics using any fluorescent dye with a small Stokes shift. We discuss how scattering contributions can be effectively removed, and propose an alternative way of defining zero time of solvation. Finally, we demonstrate the tuning location of the probe within confinement.

Long-term trends in dissolved iron and DOC concentration linked to nitrate depletion in riparian soils

NASA Astrophysics Data System (ADS)

Musolff, Andreas; Selle, Benny; Fleckenstein, Jan H.; Oosterwoud, Marieke R.; Tittel, Jörg

2016-04-01

The instream concentrations of dissolved organic carbon (DOC) are rising in many catchments of the northern hemisphere. Elevated concentrations of DOC, mainly in the form of colored humic components, increase efforts and costs of drinking water purification. In this study, we evaluated a long-term dataset of 110 catchments draining into German drinking water reservoirs in order to assess sources of DOC and drivers of a potential long-term change. The average DOC concentrations across the wide range of different catchments were found to be well explained by the catchment's topographic wetness index. Higher wetness indices were connected to higher average DOC concentrations, which implies that catchments with shallow topography and pronounced riparian wetlands mobilize more DOC. Overall, 37% of the investigated catchments showed a significant long-term increase in DOC concentrations, while 22% exhibited significant negative trends. Moreover, we found that increasing trends in DOC were positively correlated to trends in dissolved iron concentrations at pH≤6 due to remobilization of DOC previously sorbed to iron minerals. Both, increasing trends in DOC and dissolve iron were found to be connected to decreasing trends and low concentrations of nitrate (below ~6 mg/L). This was especially observed in forested catchments where atmospheric N-depositions were the major source for nitrate availability. In these catchments, we also found long-term increases of phosphate concentrations. Therefore, we argue that dissolved iron, DOC and phosphate were jointly released under iron-reducing conditions when nitrate as a competing electron acceptor was too low in concentrations to prevent the microbial iron reduction. In contrast, we could not explain the observed increasing trends in DOC, iron and phosphate concentrations by the long-term trends of pH, sulfate or precipitation. Altogether this study gives strong evidence that both, source and long-term increases in DOC are primarily controlled by riparian wetland soils within the catchments. Here, the achievement of a long-term reduction in nitrogen deposition may in turn lead to a more pronounced iron reduction and a subsequent release of DOC and other iron-bound substances such as phosphate.

Seasonal variations in production and consumption rates of dissolved organic carbon in an organic-rich coastal sediment

NASA Astrophysics Data System (ADS)

Alperin, M. J.; Albert, D. B.; Martens, C. S.

1994-11-01

Dissolved organic carbon (DOC) concentrations in anoxic marine sediments are controlled by at least three processes: (1) production of nonvolatile dissolved compounds, such as peptides and amino acids, soluble saccharides and fatty acids, via hydrolysis of particulate organic carbon (POC). (2) conversion of these compounds to volatile fatty acids and alcohols by fermentative bacteria. (3) consumption of volatile fatty acids and alcohols by terminal bacteria, such as sulfate reducers and methanogens. We monitored seasonal changes in concentration profiles of total DOC, nonacid-volatile (NAV) DOC and acid-volatile (AV) DOC in anoxic sediment from Cape Lookout Bight, North Carolina, USA, in order to investigate the factors that control seasonal variations in rates of hydrolysis, fermentation, and terminal metabolism. During the winter months, DOC concentrations increased continuously from 0.2 mM in the bottomwater to ~4 mM at a depth of 36 cm in the sediment column. During the summer, a large DOC maximum developed between 5 and 20 cm, with peak concentrations approaching 10 mM. The mid-depth summertime maximum was driven by increases in both NAV- and AV-DOC concentrations. Net NAV-DOC reaction rates were estimated by a diagenetic model applied to NAV-DOC concentration profiles. Depth-integrated production rates of NAV-DOC increased from February through July, suggesting that net rates of POC hydrolysis during this period are controlled by temperature. Net consumption of NAV-DOC during the late summer and early fall suggests reduced gross NAV-DOC production rates, presumably due to a decline in the availability of labile POC. A distinct subsurface peak in AV-DOC concentration developed during the late spring, when the sulfate depletion depth shoaled from 25 to 10 cm. We hypothesize that the AV-DOC maximum results from a decline in consumption by sulfate-reducing bacteria (due to sulfate limitation) and a lag in the development of an active population of methanogenic bacteria. A diagenetic model that incorporates a lag period in the sulfate reducer-methanogen transition successfully simulates the timing, magnitude, depth and shape of the AV-DOC peak.

Controls on dissolved organic carbon quantity and chemical character in temperate rivers of North America

USGS Publications Warehouse

Hanley, Kevin W.; Wollheim, Wilfred M.; Salisbury, Joseph; Huntington, Thomas G.; Aiken, George R.

2013-01-01

Understanding the processes controlling the transfer and chemical composition of dissolved organic carbon (DOC) in freshwater systems is crucial to understanding the carbon cycle and the effects of DOC on water quality. Previous studies have identified watershed-scale controls on bulk DOC flux and concentration among small basins but fewer studies have explored controls among large basins or simultaneously considered the chemical composition of DOC. Because the chemical character of DOC drives riverine biogeochemical processes such as metabolism and photodegradation, accounting for chemical character in watershed-scale studies will improve the way bulk DOC variability in rivers is interpreted. We analyzed DOC quantity and chemical character near the mouths of 17 large North American rivers, primarily between 2008 and 2010, and identified watershed characteristics that controlled variability. We quantified DOC chemical character using both specific ultraviolet absorbance at 254 nm (SUVA254) and XAD-resin fractionation. Mean DOC concentration ranged from 2.1 to 47 mg C L−1 and mean SUVA254 ranged from 1.3 to 4.7 L mg C−1 m−1. We found a significant positive correlation between basin wetland cover and both bulk DOC concentration (R2 = 0.78; p < 0.0001) and SUVA254 (R2 = 0.91; p < 0.0001), while other land use characteristics were not correlated. The strong wetland relationship with bulk DOC concentration is similar to that found by others in small headwater catchments. However, two watersheds with extremely long surface water residence times, the Colorado and St. Lawrence, diverged from this wetland relationship. These results suggest that the role of riverine processes in altering the terrestrial DOC signal at the annual scale was minimal except in river systems with long surface water residence times. However, synoptic DOC sampling of both quantity and character throughout river networks will be needed to more rigorously test this finding. The inclusion of DOC chemical character will be vital to achieving a more complete understanding of bulk DOC dynamics in large river systems.

Absorption features of chromophoric dissolved organic matter (CDOM) and tracing implication for dissolved organic carbon (DOC) in Changjiang Estuary, China

NASA Astrophysics Data System (ADS)

Zhang, X. Y.; Chen, X.; Deng, H.; Du, Y.; Jin, H. Y.

2013-07-01

Chromophoric dissolved organic matter (CDOM) represents the light absorbing fraction of dissolved organic carbon (DOC). Studies have shown that the optical properties of CDOM can be used to infer the distribution and diffusion characteristics of DOC in the estuary and coastal zone. The inversion of DOC concentrations from remote sensing has been implemented in certain regions. In this study we investigate the potential of tracing DOC from CDOM by the measurement of DOC, absorption spectrum of CDOM, Chla concentration, suspended sediment (SS), and salinity from cruises in different seasons around the Changjiang estuary. Our results show that around the Changjiang estuary the absorption coefficients of CDOM in general have the similar spatial and temporal characteristics as that of DOC, but the strength of the correlation between CDOM and DOC varies locally and seasonally. The input of pollutants from outside the estuary, the bloom of phytoplankton in spring, re-suspension of deposited sediment, and light bleaching all contribute to the local and seasonal variation of the correlation between DOC and CDOM. An inversion model for the determination of DOC from CDOM is established, but the stability of model parameters and its application in different environments need further study. We find that relative to the absorption coefficient of CDOM, the fitted parameters of the absorption spectrum of DOM are better indictors for the composition of DOC. In addition, it is found that the terrestrial input of DOC to Changjiang estuary is a typical two-stage dilution process instead of a linear diffusion process.

Modeling the production, decomposition, and transport of dissolved organic carbon in boreal soils

USGS Publications Warehouse

Fan, Zhaosheng; Neff, Jason C.; Wickland, Kimberly P.

2010-01-01

The movement of dissolved organic carbon (DOC) through boreal ecosystems has drawn increased attention because of its potential impact on the feedback of OC stocks to global environmental change in this region. Few models of boreal DOC exist. Here we present a one-dimensional model with simultaneous production, decomposition, sorption/desorption, and transport of DOC to describe the behavior of DOC in the OC layers above the mineral soils. The field-observed concentration profiles of DOC in two moderately well-drained black spruce forest sites (one with permafrost and one without permafrost), coupled with hourly measured soil temperature and moisture, were used to inversely estimate the unknown parameters associated with the sorption/desorption kinetics using a global optimization strategy. The model, along with the estimated parameters, reasonably reproduces the concentration profiles of DOC and highlights some important potential controls over DOC production and cycling in boreal settings. The values of estimated parameters suggest that humic OC has a larger potential production capacity for DOC than fine OC, and most of the DOC produced from fine OC was associated with instantaneous sorption/desorption whereas most of the DOC produced from humic OC was associated with time-dependent sorption/desorption. The simulated DOC efflux at the bottom of soil OC layers was highly dependent on the component and structure of the OC layers. The DOC efflux was controlled by advection at the site with no humic OC and moist conditions and controlled by diffusion at the site with the presence of humic OC and dry conditions.

Hydrologic and forest management controls on DOC dynamics in the small watersheds of the H.J. Andrews Experimental Forest, OR

NASA Astrophysics Data System (ADS)

Lajtha, K.; Jones, J. A.

2016-12-01

Dissolved organic carbon (DOC) export from hillslopes to streams is an important component of the carbon cycle of a catchment and may be a critical source of energy for the aquatic food web in receiving waters. Using a long-term record of DOC and other dissolved nutrients and elements from paired watersheds from the H.J. Andrews Experimental Forest in Oregon, we explored hydrologic, climatic, and land-use controls on seasonal and inter-annual patterns of DOC flux in a seasonally dry ecosystem. Seasonal patterns of DOC flux demonstrated source limitations to DOC export, with DOC concentrations highest immediately following the first rains after a dry summer, and lowest after winter rains. In contrast, more geochemically-controlled elements showed simple dilution-concentration patterns with no seasonal hysteresis. Inter-annual patterns of DOC flux, however, did not provide evidence of source limitation, with DOC flux within a watershed tightly correlated to total discharge but not temperature. Among watersheds, forest harvest, even over 50 years ago, significantly reduced DOC flux but not fluxes of other elements including N; this response was linked to the loading of coarse woody debris to the forest floor. Chemical fingerprinting of DOC revealed that old-growth watersheds had higher fluxes of DOC characteristic of forest floor organic materials, likely delivered to streams through more surficial preferential flow pathways not subject to microbial alteration, respiration, or sorption losses. Taken together these results suggest that the biogeochemical composition of forested streams reflects both current hydrologic patterns and also processes that occurred many decades ago within the catchment.

Hydrological processes and permafrost regulate magnitude, source and chemical characteristics of dissolved organic carbon export in a peatland catchment of northeastern China

NASA Astrophysics Data System (ADS)

Guo, Yuedong; Song, Changchun; Tan, Wenwen; Wang, Xianwei; Lu, Yongzheng

2018-02-01

Permafrost thawing in peatlands has the potential to alter the catchment export of dissolved organic carbon (DOC), thus influencing the carbon balance and cycling in linked aquatic and ocean ecosystems. Peatlands along the southern margins of the Eurasian permafrost are relatively underexplored despite the considerable risks associated with permafrost degradation due to climate warming. This study examined dynamics of DOC export from a permafrost peatland catchment located in northeastern China during the 2012 to 2014 growing seasons. The estimated annual DOC loads varied greatly between 3211 and 19 022 kg yr-1, with a mean DOC yield of 4.7 g m-2 yr-1. Although the estimated DOC yield was in the lower range compared with other permafrost regions, it was still significant for the net carbon balance in the studied catchment. There were strong linkages between daily discharge and DOC concentrations in both wet and dry years, suggesting a transport-limited process of DOC delivery from the catchment. Discharge explained the majority of both seasonal and interannual variations of DOC concentrations, which made annual discharge a good indicator of total DOC load from the catchment. As indicated by three fluorescence indices, DOC source and chemical characteristics tracked the shift of flow paths during runoff processes closely. Interactions between the flow path and DOC chemical characteristics were greatly influenced by the seasonal thawing of the soil active layer. The deepening of the active layer due to climate warming likely increases the proportion of microbial-originated DOC in baseflow discharge.

On the Use of Ocean Color Remote Sensing to Measure the Transport of Dissolved Organic Carbon by the Mississippi River Plume

NASA Technical Reports Server (NTRS)

DelCastillo, Carlos E.; Miller, Richard L.

2007-01-01

We investigated the use of ocean color remote sensing to measure transport of dissolved organic carbon (DOC) by the Mississippi River to the Gulf of Mexico. From 2000 to 2005 we recorded surface measurements of DOC, colored dissolved organic matter (CDOM), salinity, and water-leaving radiances during five cruises to the Mississippi River Plume. These measurements were used to develop empirical relationships to derive CDOM, DOC, and salinity from monthly composites of SeaWiFS imagery collected from 1998 through 2005. We used river flow data and a two-end-member mixing model to derive DOC concentrations in the river end-member, river flow, and DOC transport using remote sensing data. We compared our remote sensing estimates of river flow and DOC transport with data collected by the United States Geological Survey (USGS) from 1998 through 2005. Our remote sensing estimates of river flow and DOC transport correlated well (r2 0.70) with the USGS data. Our remote sensing estimates and USGS field data showed low variability in DOC concentrations in the river end-member (7-11%), and high seasonal variability in river flow (50%). Therefore, changes in river flow control the variability in DOC transport, indicating that the remote sensing estimate of river flow is the most critical element of our DOC transport measurement. We concluded that it is possible to use this method to estimate DOC transport by other large rivers if there are data on the relationship between CDOM, DOC, and salinity in the river plume.

Metabolism of Oxo-Bile Acids and Characterization of Recombinant 12α-Hydroxysteroid Dehydrogenases from Bile Acid 7α-Dehydroxylating Human Gut Bacteria.

PubMed

Doden, Heidi; Sallam, Lina A; Devendran, Saravanan; Ly, Lindsey; Doden, Greta; Daniel, Steven L; Alves, João M P; Ridlon, Jason M

2018-05-15

Bile acids are important cholesterol-derived nutrient signaling hormones, synthesized in the liver, that act as detergents to solubilize dietary lipids. Bile acid 7α-dehydroxylating gut bacteria generate the toxic bile acids deoxycholic acid and lithocholic acid from host bile acids. The ability of these bacteria to remove the 7-hydroxyl group is partially dependent on 7α-hydroxysteroid dehydrogenase (HSDH) activity, which reduces 7-oxo-bile acids generated by other gut bacteria. 3α-HSDH has an important enzymatic activity in the bile acid 7α-dehydroxylation pathway. 12α-HSDH activity has been reported for the low-activity bile acid 7α-dehydroxylating bacterium Clostridium leptum ; however, this activity has not been reported for high-activity bile acid 7α-dehydroxylating bacteria, such as Clostridium scindens , Clostridium hylemonae , and Clostridium hiranonis Here, we demonstrate that these strains express bile acid 12α-HSDH. The recombinant enzymes were characterized from each species and shown to preferentially reduce 12-oxolithocholic acid to deoxycholic acid, with low activity against 12-oxochenodeoxycholic acid and reduced activity when bile acids were conjugated to taurine or glycine. Phylogenetic analysis suggests that 12α-HSDH is widespread among Firmicutes , Actinobacteria in the Coriobacteriaceae family, and human gut Archaea IMPORTANCE 12α-HSDH activity has been established in the medically important bile acid 7α-dehydroxylating bacteria C. scindens , C. hiranonis , and C. hylemonae Experiments with recombinant 12α-HSDHs from these strains are consistent with culture-based experiments that show a robust preference for 12-oxolithocholic acid over 12-oxochenodeoxycholic acid. Phylogenetic analysis identified novel members of the gut microbiome encoding 12α-HSDH. Future reengineering of 12α-HSDH enzymes to preferentially oxidize cholic acid may provide a means to industrially produce the therapeutic bile acid ursodeoxycholic acid. In addition, a cholic acid-specific 12α-HSDH expressed in the gut may be useful for the reduction in deoxycholic acid concentration, a bile acid implicated in cancers of the gastrointestinal (GI) tract. Copyright © 2018 American Society for Microbiology.

The bile acids, deoxycholic acid and ursodeoxycholic acid, regulate colonic epithelial wound healing.

PubMed

Mroz, Magdalena S; Lajczak, Natalia K; Goggins, Bridie J; Keely, Simon; Keely, Stephen J

2018-03-01

The intestinal epithelium constitutes an innate barrier which, upon injury, undergoes self-repair processes known as restitution. Although bile acids are known as important regulators of epithelial function in health and disease, their effects on wound healing processes are not yet clear. Here we set out to investigate the effects of the colonic bile acids, deoxycholic acid (DCA) and ursodeoxycholic acid (UDCA), on epithelial restitution. Wound healing in T 84 cell monolayers grown on transparent, permeable supports was assessed over 48 h with or without bile acids. Cell migration was measured in Boyden chambers. mRNA and protein expression were measured by RT-PCR and Western blotting. DCA (50-150 µM) significantly inhibited wound closure in cultured epithelial monolayers and attenuated cell migration in Boyden chamber assays. DCA also induced nuclear accumulation of the farnesoid X receptor (FXR), whereas an FXR agonist, GW4064 (10 µM), inhibited wound closure. Both DCA and GW4064 attenuated the expression of CFTR Cl - channels, whereas inhibition of CFTR activity with either CFTR- inh -172 (10 µM) or GlyH-101 (25 µM) also prevented wound healing. Promoter/reporter assays revealed that FXR-induced downregulation of CFTR is mediated at the transcriptional level. In contrast, UDCA (50-150 µM) enhanced wound healing in vitro and prevented the effects of DCA. Finally, DCA inhibited and UDCA promoted mucosal healing in an in vivo mouse model. In conclusion, these studies suggest bile acids are important regulators of epithelial wound healing and are therefore good targets for development of new drugs to modulate intestinal barrier function in disease treatment. NEW & NOTEWORTHY The secondary bile acid, deoxycholic acid, inhibits colonic epithelial wound healing, an effect which appears to be mediated by activation of the nuclear bile acid receptor, FXR, with subsequent downregulation of CFTR expression and activity. In contrast, ursodeoxycholic acid promotes wound healing, suggesting it may provide an alternative approach to prevent the losses of barrier function that are associated with mucosal inflammation in IBD patients.

Where does boreal stream DOC come from? - Quantifying the contribution from different landscape compartments using stable C isotope ratios.

NASA Astrophysics Data System (ADS)

Brink Bylund, J.; Bastviken, D.; Morth, C.; Laudon, H.; Giesler, R.; Buffam, I.

2007-12-01

Stable carbon isotope (δ13C) ratios are frequently used as a source tracer of e.g. organic matter (OM) produced in terrestrial versus aquatic environments. To our knowledge there has been no previous attempt to quantify the relative contribution of dissolved organic carbon (DOC) from various landscape compartments in catchments of different sizes. Here, we test to what extent δ13C values can be used also to quantify the relative contribution of DOC from wetlands/riparian zones along streams, and off stream forest habitats, respectively. We present data on spatial and temporal variability of DOC concentrations and δ13C-DOC values, during the year of 2005 in Krycklan catchment, a boreal stream network in northern Sweden. Ten stream sites, ranging from order 1 to 4, were monitored in sub catchments with different wetland coverage. Spatial variation of DOC concentration showed a weak but statistically significant relationship with wetland area, with higher concentration with increasing percent of wetland in the drainage area. During base flow the difference in δ13C-DOC values was significantly different between forest (-27.5‰) and wetland (-28.1‰). This spatial pattern disappears during spring peak flow when higher discharge flushing upper soil layer and the riparian zone on DOC in the catchments. A simple mixing model using DOC and δ13C-DOC showed that stream water DOC could be describe as a mixture of DOC coming from forest (deep) groundwater and wetland/riparian zone water. The result indicates that during spring peak flow almost all stream DOC (84-100%) is derived from wetlands and riparian zones. The wetland/riparian water dominates the stream DOC flux at all hydrological events, except for two sites, one forest dominated and one mixed catchment, where the forest groundwater dominated the DOC transport during base flow. Although the total wetland area in Krycklan catchment only represent 8.3%, it contributed, together with riparian zones, to as much as 83% of the yearly DOC transport. This study shows that there is a great potential in using stable carbon isotopes to quantify the relative contribution of DOC from various landscape compartments in catchments. Quantitative patterns are crucial for several reasons. It is for example necessary in predicting the response to global warming which will result in a changed hydrology and shifts in the relative area of the landscape compartments in boreal environments. KEY WORDS carbon isotopes; dissolved organic carbon; streams; boreal; landscape compartments; wetland; groundwater

Direct analysis of δ13C and concentration of dissolved organic carbon (DOC) in environmental samples by TOC-IRMS

NASA Astrophysics Data System (ADS)

Kirkels, Frédérique; Cerli, Chiara; Federherr, Eugen; Kalbitz, Karsten

2014-05-01

Dissolved organic carbon (DOC) plays an important role in carbon cycling in terrestrial and aquatic systems. Stable isotope analysis (delta 13C) of DOC could provide valuable insights in its origin, fluxes and environmental fate. Precise and routine analysis of delta 13C and DOC concentration are therefore highly desirable. A promising, new system has been developed for this purpose, linking a high-temperature combustion TOC analyzer trough an interface with a continuous flow isotope ratio mass spectrometer (Elementar group, Hanau, Germany). This TOC-IRMS system enables simultaneous stable isotope (bulk delta 13C) and concentration analysis of DOC, with high oxidation efficiency by high-temperature combustion for complex mixtures as natural DOC. To give delta 13C analysis by TOC-IRMS the necessary impulse for broad-scale application, we present a detailed evaluation of its analytical performance for realistic and challenging conditions inclusive low DOC concentrations and environmental samples. High precision (standard deviation, SD predominantly < 0.15 permil) and accuracy (R2 = 0.9997, i.e. comparison TOC-IRMS and conventional EA-IRMS) were achieved by TOC-IRMS for a broad diversity of DOC solutions. This precision is comparable or even slightly better than that typically reported for EA-IRMS systems, and improves previous techniques for δ13C analysis of DOC. Simultaneously, very good precision was obtained for DOC concentration measurements. Assessment of natural abundance and slightly 13C enriched DOC, a wide range of concentrations (0.2-150 mgC/L) and injection volumes (0.05-3 ml), demonstrated good analytical performance with negligible memory effects, no concentration/volume effects and a wide linearity. Low DOC concentrations (< 2 mgC/L), were correctly analyzed without any pre-concentration. Moreover, TOC-IRMS was successfully applied to analyze DOC from diverse terrestrial, freshwater and marine environments (SD < 0.23 permil). In summary, the TOC-IRMS performs fast and reliable analysis of DOC concentration and δ13C in aqueous samples, without any pre-concentration/freeze-drying. Flexible usage is highlighted by automated, online analysis, a variable injection volume, high throughput and no extensive maintenance. Sample analysis is simple, using small aliquots and with minimal sample preparation. Further investigations should focus on complex, saline matrices and very low DOC concentrations, to achieve a potential lower limit of 0.2 mgC/L. High-resolution, routine delta 13C analysis of DOC by TOC-IRMS offers opportunities for wide-scale application in terrestrial, freshwater and marine research to elucidate the role of DOC in biogeochemical processes and ecosystem functioning.

Earth System Documentation (ES-DOC) Preparation for CMIP6

NASA Astrophysics Data System (ADS)

Denvil, S.; Murphy, S.; Greenslade, M. A.; Lawrence, B.; Guilyardi, E.; Pascoe, C.; Treshanksy, A.; Elkington, M.; Hibling, E.; Hassell, D.

2015-12-01

During the course of 2015 the Earth System Documentation (ES-DOC) project began its preparations for CMIP6 (Coupled Model Inter-comparison Project 6) by further extending the ES-DOC tooling ecosystem in support of Earth System Model (ESM) documentation creation, search, viewing & comparison. The ES-DOC online questionnaire, the ES-DOC desktop notebook, and the ES-DOC python toolkit will serve as multiple complementary pathways to generating CMIP6 documentation. It is envisaged that institutes will leverage these tools at different points of the CMIP6 lifecycle. Institutes will be particularly interested to know that the documentation burden will be either streamlined or completely automated.As all the tools are tightly integrated with the ES-DOC web-service, institutes can be confident that the latency between documentation creation & publishing will be reduced to a minimum. Published documents will be viewable with the online ES-DOC Viewer (accessible via citable URL's). Model inter-comparison scenarios will be supported using the ES-DOC online Comparator tool. The Comparator is being extended to:• Support comparison of both Model descriptions & Simulation runs;• Greatly streamline the effort involved in compiling official tables.The entire ES-DOC ecosystem is open source and built upon open standards such as the Common Information Model (CIM) (versions 1 and 2).

Plant diversity induces a shift of DOC concentration over time - results from long term and large scale experiment

NASA Astrophysics Data System (ADS)

Lange, Markus; Gleixner, Gerd

2016-04-01

Plant diversity has been demonstrated as a crucial factor for soil organic carbon (SOC) storage. The horizontal SOC formation in turn is strongly impacted by the relative small but consistent flow of dissolved organic carbon (DOC) in soils. In this process, pore water leaches plant material and already stored SOC while simultaneously these leachates are transported downwards. However, there is a big uncertainty about the drivers of DOC flux; in particular about the importance of biological processes. We investigated the impact of plant diversity and other biotic drivers on DOC concentrations and total DOC fluxes (concentration × sampled water amount). In addition, we considered abiotic factors such as weather and soil conditions to assess the relative importance of biotic and abiotic drivers and how their importance changes over time. We used a comprehensive data set, gathered in the frame of the long-term biodiversity experiment "The Jena Experiment". Permanent monitoring started directly after establishment of the field site in 2002 and is still running. This enabled us to trace the impact of plant communities with their increasing establishment over the time on DOC concentration. We found the amount of sampled pore water best explained by rainfall, while it was not related to plant associated variables. Directly after establishing the experimental site, DOC concentrations were highest and then decreasing with time. In the first period of the experiment plant diversity had no or even a slightly negative impact on DOC concentrations. The direction of the plant diversity effect on DOC concentrations changed over time; namely in later phases we observed highest DOC concentrations on plots with high plant diversity. Moreover, DOC concentrations were negatively affected by increased amounts of sampled pore water indicating a dilution effect. Even though this impact was highly significant; its effect size was even less pronounced at later time points. In summary, inter annual differences of total DOC fluxes reflect patterns of sampled soil water, indicating the major driver of total DOC flux is driven by rainfall. In contrast, intra annually the DOC flux reflects the patterns of the DOC concentrations with a strengthening positive impact of plant diversity among time. Our results show that variations of the total DOC fluxes are more affected by the pore water flux than by the differences in DOC concentrations as the magnitude of the pore water flux exceeds the magnitude of concentrations by a factor of 20. This indicates that abiotic conditions set the frame in which biotic properties can drive the DOC flux. However, the biotic drivers are getting more important over time and might outperform the dominating role of the abiotic conditions on the longer term.

Effects of high-dose ketoconazole treatment on adrenal mineralocorticoid biosynthesis in dogs and rats.

PubMed

De Coster, R; Coene, M C; Haelterman, C; Beerens, D; Goeminne, N

1987-07-01

At high doses, ketoconazole blocks both testicular and adrenal androgen biosyntheses and partially inhibits the glucocorticoid production. To investigate the effects of this imidazole derivative on the mineralocorticoid biosynthesis, 7 male mongrel dogs received a single oral dose of 15 mg/kg of ketoconazole or placebo, in a cross-over way. From 2 to 4 h after treatment, an iv infusion of angiotensin II (10 ng/kg per min) was performed. Ketoconazole treatment significantly blunted the aldosterone and cortisol increment, whereas 18-hydroxycorticosterone, corticosterone, 11-deoxycorticosterone (DOC), progesterone, and 17 alpha-hydroxyprogesterone rose to peak concentrations, respectively 2.5-, 6-, 8-, 2.5- and 1.5-fold higher than those observed after placebo administration. Plasma 11-deoxycortisol and renin activity levels remained similar in both groups. On the other hand, 2 X 2 groups of 10 male adult rats each were fed with a normal or a sodium-depleted diet. Of the two sets of groups, one was treated ip with ketoconazole (20 mg/kg twice a day), the other with vehicle solution. In animals on either diet, ketoconazole lowered 18-hydroxycorticosterone and aldosterone concentrations. Plasma DOC rose up to 25-fold in the salt-deprived animals. Serum Na+, Cl-, corticosterone and plasma renin activity remained unaffected by the treatment. These results show that high-dose ketoconazole treatment partially inhibits the biosynthesis of aldosterone by affecting the cytochrome P-45011 beta.(ABSTRACT TRUNCATED AT 250 WORDS)

Hidden cycle of dissolved organic carbon in the deep ocean.

PubMed

Follett, Christopher L; Repeta, Daniel J; Rothman, Daniel H; Xu, Li; Santinelli, Chiara

2014-11-25

Marine dissolved organic carbon (DOC) is a large (660 Pg C) reactive carbon reservoir that mediates the oceanic microbial food web and interacts with climate on both short and long timescales. Carbon isotopic content provides information on the DOC source via δ(13)C and age via Δ(14)C. Bulk isotope measurements suggest a microbially sourced DOC reservoir with two distinct components of differing radiocarbon age. However, such measurements cannot determine internal dynamics and fluxes. Here we analyze serial oxidation experiments to quantify the isotopic diversity of DOC at an oligotrophic site in the central Pacific Ocean. Our results show diversity in both stable and radio isotopes at all depths, confirming DOC cycling hidden within bulk analyses. We confirm the presence of isotopically enriched, modern DOC cocycling with an isotopically depleted older fraction in the upper ocean. However, our results show that up to 30% of the deep DOC reservoir is modern and supported by a 1 Pg/y carbon flux, which is 10 times higher than inferred from bulk isotope measurements. Isotopically depleted material turns over at an apparent time scale of 30,000 y, which is far slower than indicated by bulk isotope measurements. These results are consistent with global DOC measurements and explain both the fluctuations in deep DOC concentration and the anomalous radiocarbon values of DOC in the Southern Ocean. Collectively these results provide an unprecedented view of the ways in which DOC moves through the marine carbon cycle.

Hidden cycle of dissolved organic carbon in the deep ocean

PubMed Central

Follett, Christopher L.; Repeta, Daniel J.; Rothman, Daniel H.; Xu, Li; Santinelli, Chiara

2014-01-01

Marine dissolved organic carbon (DOC) is a large (660 Pg C) reactive carbon reservoir that mediates the oceanic microbial food web and interacts with climate on both short and long timescales. Carbon isotopic content provides information on the DOC source via δ13C and age via Δ14C. Bulk isotope measurements suggest a microbially sourced DOC reservoir with two distinct components of differing radiocarbon age. However, such measurements cannot determine internal dynamics and fluxes. Here we analyze serial oxidation experiments to quantify the isotopic diversity of DOC at an oligotrophic site in the central Pacific Ocean. Our results show diversity in both stable and radio isotopes at all depths, confirming DOC cycling hidden within bulk analyses. We confirm the presence of isotopically enriched, modern DOC cocycling with an isotopically depleted older fraction in the upper ocean. However, our results show that up to 30% of the deep DOC reservoir is modern and supported by a 1 Pg/y carbon flux, which is 10 times higher than inferred from bulk isotope measurements. Isotopically depleted material turns over at an apparent time scale of 30,000 y, which is far slower than indicated by bulk isotope measurements. These results are consistent with global DOC measurements and explain both the fluctuations in deep DOC concentration and the anomalous radiocarbon values of DOC in the Southern Ocean. Collectively these results provide an unprecedented view of the ways in which DOC moves through the marine carbon cycle. PMID:25385632

Antimicrobial susceptibility and internalization of Salmonella Typhimurium in vacuum-tumbled marinated beef products.

PubMed

Pokharel, S; Brooks, J C; Martin, J N; Brashears, M M

2016-12-01

As the incidence of multidrug resistance (MDR) Salmonella enterica serotype Typhimurium is increasing, data regarding the antimicrobial interventions and pathogen internalization in marinated meat products are important. This study evaluated the antimicrobial intervention and internalization of Salm. Typhimurium in marinated beef sirloin steaks. Beef bottom sirloin flaps (IMPS #185A; USDA Select) inoculated (10 8  log 10  CFU ml -1 ) with Salm. Typhimurium were sprayed (lactic acid (4%) and buffered vinegar (2%)) prior to vacuum-tumbled marination (0·35% sodium chloride and 0·45% sodium tripolyphosphate) for 30 min. Pathogen presence after antimicrobial spray, vacuum-tumbled marination, and translocation was determined by direct plating on Xylose Lysine Deoxycholate (XLD) agar with tryptic soy agar (TSA) overlay. The data imply varied internalization and antimicrobial susceptibility pattern of Salm. Typhimurium in marinated meat. Lactic acid (4%) spray (P < 0·0001) and buffered vinegar (2%; P < 0·0001) reduced surface populations of Salm. Typhimurium on inoculated beef sirloin flaps prior to vacuum marination. However, lactic acid treated sirloin flaps had greater reductions (~2 log 10  CFU cm -2 ) than buffered vinegar when compared with control prior to vacuum marination. However, the translocation of Salm. Typhimurium following vacuum marination was not influenced (P < 0·333) by the application of a surface organic acid spray prior to marination. As detailed in the Federal Register FSIS final rule (9 CFR part 317), vacuum-marinated, vacuum-tumbled meat products are not designated as 'mechanically tenderized'. As such, the internalization and potential survival of Salmonella spp. in marinated beef products is a major concern. These results highlight the internalization of pathogens in vacuum-tumbled meat products and emphasize the importance of considering these products as nonintact. Similarly, these data confirm the efficacy and utility of interventions prior to vacuum-tumbled marination. Further research is needed to identify additional strategies to mitigate internalization and translocation of pathogens into vacuum-marinated meat products. © 2016 The Society for Applied Microbiology.

Development of a combined isotopic and mass-balance approach to determine dissolved organic carbon sources in eutrophic reservoirs.

PubMed

Pierson-Wickmann, Anne-Catherine; Gruau, Gérard; Jardé, Emilie; Gaury, Nicolas; Brient, Luc; Lengronne, Marion; Crocq, André; Helle, Daniel; Lambert, Thibault

2011-04-01

A combined mass-balance and stable isotope approach was set up to identify and quantify dissolved organic carbon (DOC) sources in a DOC-rich (9mgL(-1)) eutrophic reservoir located in Western France and used for drinking water supply (so-called Rophemel reservoir). The mass-balance approach consisted in measuring the flux of allochthonous DOC on a daily basis, and in comparing it with the effective (measured) DOC concentration of the reservoir. The isotopic approach consisted, for its part, in measuring the carbon isotope ratios (δ(13)C values) of both allochthonous and autochthonous DOC sources, and comparing these values with the δ(13)C values of the reservoir DOC. Results from both approaches were consistent pointing out for a DOC of 100% allochthonous origin. In particular, the δ(13)C values of the DOC recovered in the reservoir (-28.5±0.2‰; n=22) during the algal bloom season (May-September) showed no trace of an autochthonous contribution (δ(13)C in algae=-30.1±0.3‰; n=2) being indistinguishable from the δ(13)C values of allochthonous DOC from inflowing rivers (-28.6±0.1‰; n=8). These results demonstrate that eutrophication is not responsible for the high DOC concentrations observed in the Rophemel reservoir and that limiting eutrophication of this reservoir will not reduce the potential formation of disinfection by-products during water treatment. The methodology developed in this study based on a complementary isotopic and mass-balance approach provides a powerful tool, suitable to identify and quantify DOC sources in eutrophic, DOC-contaminated reservoirs. Copyright © 2010 Elsevier Ltd. All rights reserved.

The influence of reservoirs, climate, land use and hydrologic conditions on loads and chemical quality of dissolved organic carbon in the Colorado River

USGS Publications Warehouse

Miller, Matthew P.

2012-01-01

Longitudinal patterns in dissolved organic carbon (DOC) loads and chemical quality were identified in the Colorado River from the headwaters in the Rocky Mountains to the United States-Mexico border from 1994 to 2011. Watershed- and reach-scale climate, land use, river discharge and hydrologic modification conditions that contribute to patterns in DOC were also identified. Principal components analysis (PCA) identified site-specific precipitation and reach-scale discharge as being correlated with sites in the upper basin, where there were increases in DOC load from the upstream to downstream direction. In the lower basin, where DOC load decreased from upstream to downstream, sites were correlated with site-specific temperature and reach-scale population, urban land use and hydrologic modification. In the reaches containing Lakes Powell and Mead, the two largest reservoirs in the United States, DOC quantity decreased, terrestrially derived aromatic DOC was degraded and/or autochthonous less aromatic DOC was produced. Taken together, these results suggest that longitudinal patterns in the relatively unregulated upper basin are influenced by watershed inputs of water and DOC, whereas DOC patterns in the lower basin are reflective of a balance between watershed contribution of water and DOC to the river and loss of water and DOC due to hydrologic modification and/or biogeochemical processes. These findings suggest that alteration of constituent fluxes in rivers that are highly regulated may overshadow watershed processes that would control fluxes in comparable unregulated rivers. Further, these results provide a foundation for detailed assessments of factors controlling the transport and chemical quality of DOC in the Colorado River.

Insights and issues with simulating terrestrial DOC loading of Arctic river networks

USGS Publications Warehouse

Kicklighter, David W.; Hayes, Daniel J.; McClelland, James W.; Peterson, Bruce J.; McGuire, A. David; Melillo, Jerry M.

2013-01-01

Terrestrial carbon dynamics influence the contribution of dissolved organic carbon (DOC) to river networks in addition to hydrology. In this study, we use a biogeochemical process model to simulate the lateral transfer of DOC from land to the Arctic Ocean via riverine transport. We estimate that, over the 20th century, the pan-Arctic watershed has contributed, on average, 32 Tg C/yr of DOC to river networks emptying into the Arctic Ocean with most of the DOC coming from the extensive area of boreal deciduous needle-leaved forests and forested wetlands in Eurasian watersheds. We also estimate that the rate of terrestrial DOC loading has been increasing by 0.037 Tg C/yr2 over the 20th century primarily as a result of climate-induced increases in water yield. These increases have been offset by decreases in terrestrial DOC loading caused by wildfires. Other environmental factors (CO2 fertilization, ozone pollution, atmospheric nitrogen deposition, timber harvest, agriculture) are estimated to have relatively small effects on terrestrial DOC loading to Arctic rivers. The effects of the various environmental factors on terrestrial carbon dynamics have both offset and enhanced concurrent effects on hydrology to influence terrestrial DOC loading and may be changing the relative importance of terrestrial carbon dynamics on this carbon flux. Improvements in simulating terrestrial DOC loading to pan-Arctic rivers in the future will require better information on the production and consumption of DOC within the soil profile, the transfer of DOC from land to headwater streams, the spatial distribution of precipitation and its temporal trends, carbon dynamics of larch-dominated ecosystems in eastern Siberia, and the role of industrial organic effluents on carbon budgets of rivers in western Russia.

Controls on stream water dissolved mercury in three mid-Appalachian forested headwater catchments

NASA Astrophysics Data System (ADS)

Riscassi, Ami L.; Scanlon, Todd M.

2011-12-01

Determining the controls on dissolved mercury (HgD) transport is necessary to improve estimations of export from unmonitored watersheds and to forecast responses to changes in deposition and other environmental forcings. Stream water HgD and dissolved organic carbon (DOC) were evaluated over a range of discharge conditions in three streams within Shenandoah National Park, VA. Watersheds are distinguished by stream water pH (ranging from neutral to acidic) and soil size fractioning (ranging from clays to sands). At all sites, discharge was a significant but poor predictor of HgD concentrations (r2 from 0.13-0.52). HgD was strongly coupled with DOC at all sites (r2 from 0.74-0.89). UV absorbance at 254 nm (UV254), a proxy for DOC quantity and quality, slightly improved the predictions of HgD. Mean DOC quality differed between streams, with less aromatic DOC mobilized from the more acidic watershed. The site with less aromatic DOC and sandy soils mobilized more Hg to the stream for the same quantity and quality of DOC, likely due to the reduced capacity of the larger-grained soils to retain Hg, leaving a greater fraction associated with the organic matter. A similar amount of 0.54 ng HgD/mg DOC is transported at all sites, suggesting the less aromatic DOC transports less Hg per unit DOC, offsetting the effects of soil type. This research demonstrates that soil composition and DOC quality influence HgDexport. We also provide evidence that soil organic carbon is a primary control on Hg-DOC ratios (0.12-1.4 ng mg-1) observed across the U.S. and Sweden.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Qichun; Zhang, Xuesong; Xu, Xingya

Riverine carbon cycling is an important, but insufficiently investigated component of the global carbon cycle. Analyses of environmental controls on riverine carbon cycling are critical for improved understanding of mechanisms regulating carbon processing and storage along the terrestrial-aquatic continuum. Here, we compile and analyze riverine dissolved organic carbon (DOC) concentration data from 1402 United States Geological Survey (USGS) gauge stations to examine the spatial variability and environmental controls of DOC concentrations in the United States (U.S.) surface waters. DOC concentrations exhibit high spatial variability, with an average of 6.42 ± 6.47 mg C/ L (Mean ± Standard Deviation). In general,more » high DOC concentrations occur in the Upper Mississippi River basin and the Southeastern U.S., while low concentrations are mainly distributed in the Western U.S. Single-factor analysis indicates that slope of drainage areas, wetlands, forests, percentage of first-order streams, and instream nutrients (such as nitrogen and phosphorus) pronouncedly influence DOC concentrations, but the explanatory power of each bivariate model is lower than 35%. Analyses based on the general multi-linear regression models suggest DOC concentrations are jointly impacted by multiple factors. Soil properties mainly show positive correlations with DOC concentrations; forest and shrub lands have positive correlations with DOC concentrations, but urban area and croplands demonstrate negative impacts; total instream phosphorus and dam density correlate positively with DOC concentrations. Notably, the relative importance of these environmental controls varies substantially across major U.S. water resource regions. In addition, DOC concentrations and environmental controls also show significant variability from small streams to large rivers, which may be caused by changing carbon sources and removal rates by river orders. In sum, our results reveal that general multi-linear regression analysis of twenty one terrestrial and aquatic environmental factors can partially explain (56%) the DOC concentration variation. In conclusion, this study highlights the complexity of the interactions among these environmental factors in determining DOC concentrations, thus calls for processes-based, non-linear methodologies to constrain uncertainties in riverine DOC cycling.« less

Identification and analysis of low molecular weight dissolved organic carbon in subglacial basal ice ecosystems by ion chromatography

NASA Astrophysics Data System (ADS)

Lawson, E. C.; Wadham, J. L.; Lis, G. P.; Tranter, M.; Pickard, A. E.; Stibal, M.; Dewsbury, P.; Fitzsimons, S.

2015-08-01

Glacial runoff is an important source of dissolved organic carbon (DOC) for downstream heterotrophic activity, despite the low overall DOC concentrations. This is because of the abundance of bioavailable, low molecular weight (LMW) DOC species. However, the provenance and character of LMW-DOC is not fully understood. We investigated the abundance and composition of DOC in subglacial environments via a molecular level DOC analysis of basal ice, which forms by water/sediment freeze-on to the glacier sole. Spectrofluorometry and a novel ion chromatographic method, which has been little utilised in glacial science for LMW-DOC determinations, were employed to identify and quantify the major LMW fractions (free amino acids, carbohydrates and carboxylic acids) in basal ice from four glaciers, each with a different basal debris type. Basal ice from Joyce Glacier (Antarctica) was unique in that 98 % of the LMW-DOC was derived from the extremely diverse FAA pool, comprising 14 FAAs. LMW-DOC concentrations in basal ice were dependent on the bioavailability of the overridden organic carbon (OC), which in turn, was influenced by the type of overridden material. Mean LMW-DOC concentrations in basal ice from Russell Glacier (Greenland), Finsterwalderbreen (Svalbard) and Engabreen (Norway) were low (0-417 nM C), attributed to the relatively refractory nature of the OC in the overridden paleosols and bedrock. In contrast, mean LMW-DOC concentrations were an order of magnitude higher (4430 nM C) in basal ice from Joyce Glacier, a reflection of the high bioavailability of the overridden lacustrine material (>17 % of the sediment OC comprised extractable carbohydrates, a proxy for bioavailable OC). We find that the overridden material may act as a direct (via abiotic leaching) and indirect (via microbial cycling) source of DOC to the subglacial environment and provides a range of LMW-DOC compounds that may stimulate microbial activity in wet sediments in current subglacial environments.

Partial coupling and differential regulation of biologically and photo-chemically labile dissolved organic carbon across boreal aquatic networks

NASA Astrophysics Data System (ADS)

Lapierre, J.-F.; del Giorgio, P. A.

2014-05-01

Despite the rapidly increasing volume of research on the biological and photochemical degradation of DOC in aquatic environments, little is known on the large-scale patterns in biologically and photo-chemically degradable DOC (Bd-DOC and Pd-DOC, respectively) in continental watersheds, and on the links that exist between these two key properties that greatly influence the flow of carbon from continents to oceans. Here we explore the patterns of Bd- and Pd-DOC across hundreds of boreal lakes, rivers and wetlands spanning a large range of system trophy and terrestrial influence, and compared the drivers of these two reactive pools of DOC at the landscape level. Using standardized incubations of natural waters, we found that the concentrations of Bd- and Pd-DOC co-varied across all systems studied but were nevertheless related to different pools of dissolved organic matter (DOM, identified by fluorescence analyses) in ambient waters. A combination of nutrients and protein-like DOM explained nearly half of the variation in Bd-DOC, whereas Pd-DOC was exclusively predicted by DOM optical properties, consistent with the photochemical degradability of specific fluorescent DOM (FDOM) pools that we experimentally determined. The concentrations of colored DOM (CDOM), a proxy of terrestrial influence, almost entirely accounted for the observed relationship between FDOM and the concentrations of both Bd- and Pd-DOC. The concentrations of CDOM and of the putative bio-labile fluorescence component shifted from complete decoupling in clear-water environments to strong coupling in browner streams and wetlands. This suggests a baseline autochthonous Bd-DOC pool fuelled by internal production that is gradually overwhelmed by land-derived Bd-DOC as terrestrial influence increases across landscape gradients. The importance of land as a major source of both biologically and photo-chemically degradable DOC for continental watersheds resulted in a partial coupling of those carbon pools in natural freshwaters, despite fundamental contrasts in terms of their composition and regulation.

Characterization of Greenbeard Genes Involved in Long-Distance Kind Discrimination in a Microbial Eukaryote

PubMed Central

Heller, Jens; Zhao, Jiuhai; Rosenfield, Gabriel; Kowbel, David J.; Gladieux, Pierre; Glass, N. Louise

2016-01-01

Microorganisms are capable of communication and cooperation to perform social activities. Cooperation can be enforced using kind discrimination mechanisms in which individuals preferentially help or punish others, depending on genetic relatedness only at certain loci. In the filamentous fungus Neurospora crassa, genetically identical asexual spores (germlings) communicate and fuse in a highly regulated process, which is associated with fitness benefits during colony establishment. Recognition and chemotropic interactions between isogenic germlings requires oscillation of the mitogen-activated protein kinase (MAPK) signal transduction protein complex (NRC-1, MEK-2, MAK-2, and the scaffold protein HAM-5) to specialized cell fusion structures termed conidial anastomosis tubes. Using a population of 110 wild N. crassa isolates, we investigated germling fusion between genetically unrelated individuals and discovered that chemotropic interactions are regulated by kind discrimination. Distinct communication groups were identified, in which germlings within one communication group interacted at high frequency, while germlings from different communication groups avoided each other. Bulk segregant analysis followed by whole genome resequencing identified three linked genes (doc-1, doc-2, and doc-3), which were associated with communication group phenotype. Alleles at doc-1, doc-2, and doc-3 fell into five haplotypes that showed transspecies polymorphism. Swapping doc-1 and doc-2 alleles from different communication group strains was necessary and sufficient to confer communication group affiliation. During chemotropic interactions, DOC-1 oscillated with MAK-2 to the tips of conidial anastomosis tubes, while DOC-2 was statically localized to the plasma membrane. Our data indicate that doc-1, doc-2, and doc-3 function as “greenbeard” genes, involved in mediating long-distance kind recognition that involves actively searching for one’s own type, resulting in cooperation between non-genealogical relatives. Our findings serve as a basis for investigations into the mechanisms associated with attraction, fusion, and kind recognition in other eukaryotic species. PMID:27077707

Permafrost conditions in peatlands regulate magnitude, timing, and chemical composition of catchment dissolved organic carbon export.

PubMed

Olefeldt, David; Roulet, Nigel T

2014-10-01

Permafrost thaw in peatlands has the potential to alter catchment export of dissolved organic carbon (DOC) and thus influence downstream aquatic C cycling. Subarctic peatlands are often mosaics of different peatland types, where permafrost conditions regulate the hydrological setting of each type. We show that hydrological setting is key to observed differences in magnitude, timing, and chemical composition of DOC export between permafrost and nonpermafrost peatland types, and that these differences influence the export of DOC of larger catchments even when peatlands are minor catchment components. In many aspects, DOC export from a studied peatland permafrost plateau was similar to that of a forested upland catchment. Similarities included low annual export (2-3 g C m(-2) ) dominated by the snow melt period (~70%), and how substantial DOC export following storms required wet antecedent conditions. Conversely, nonpermafrost fens had higher DOC export (7 g C m(-2) ), resulting from sustained hydrological connectivity during summer. Chemical composition of catchment DOC export arose from the mixing of highly aromatic DOC from organic soils from permafrost plateau soil water and upland forest surface horizons with nonaromatic DOC from mineral soil groundwater, but was further modulated by fens. Increasing aromaticity from fen inflow to outlet was substantial and depended on both water residence time and water temperature. The role of fens as catchment biogeochemical hotspots was further emphasized by their capacity for sulfate retention. As a result of fen characteristics, a 4% fen cover in a mixed catchment was responsible for 34% higher DOC export, 50% higher DOC concentrations and ~10% higher DOC aromaticity at the catchment outlet during summer compared to a nonpeatland upland catchment. Expansion of fens due to thaw thus has potential to influence landscape C cycling by increasing fen capacity to act as biogeochemical hotspots, amplifying aquatic C cycling, and increasing catchment DOC export. © 2014 John Wiley & Sons Ltd.

Role of Fire and Landscape Position on Dissolved Organic Carbon Composition and Reactivity in the Yukon-Kuskokwim Delta, Alaska

NASA Astrophysics Data System (ADS)

Bristol, E. M.; Dabrowski, J. S.; Jimmie, J. A.; Peter, D. L.; Holmes, R. M.; Mann, P. J.; Natali, S.; Schade, J. D.

2017-12-01

The Yukon-Kuskokwim Delta in southwest, Alaska is characterized by discontinuous permafrost, which is vulnerable to thaw induced by climate change. Recent fires in the delta have caused dramatic changes in the landscape, likely changing carbon dynamics, and potentially altering dissolved organic carbon (DOC) composition and DOC concentrations in aquatic ecosystems. These changes, in turn, likely affect microbial respiration and hydrologic C export from watersheds in the delta. In this study, we investigated how landscape position and fire history drive changes in DOC composition and reactivity in aquatic ecosystems. We surveyed soil pore waters, ponds, fens, and streams at varying landscape positions in burned and unburned landscapes. We also conducted a laboratory experiment to compare the role of photooxidation, photodegradation, and microbial respiration in altering DOC composition and concentration. Surface waters in burned regions were higher in temperature and inorganic nitrogen concentrations. Higher conductivity in burned areas suggests that fire is deepening the water table, causing water to flow through a more mineral soil horizon. While DOC concentrations did not vary significantly by landscape position or fire history, optical properties of DOC suggest that DOC molecular weight is lower in burned regions and decreases along flow paths. Similarly, our incubation experiment indicated that changes in DOC composition are driven by exposure to light more than bacterial respiration, and that photochemical reactivity declines along flow paths. Percent DOC loss was greatest in waters exposed to both light and bacterial, and percent DOC loss from burned watershed waters was correlated with optical properties. Based on our findings, we predict that the combination of increased surface water temperatures, increased inorganic nitrogen concentrations, and lower molecular weight DOC will increase bacterial respiration of DOC in watersheds burned by wildfire. Further research is needed to better understand the changing hydrology in burned tundra, and the relationship between photooxidation and biological mineralization of DOC.

Temporal changes in photoreactivity of dissolved organic carbon and implications for aquatic carbon fluxes from peatlands

NASA Astrophysics Data System (ADS)

Pickard, Amy E.; Heal, Kate V.; McLeod, Andrew R.; Dinsmore, Kerry J.

2017-04-01

Aquatic systems draining peatland catchments receive a high loading of dissolved organic carbon (DOC) from the surrounding terrestrial environment. Whilst photo-processing is known to be an important process in the transformation of aquatic DOC, the drivers of temporal variability in this pathway are less well understood. In this study, 8 h laboratory irradiation experiments were conducted on water samples collected from two contrasting peatland aquatic systems in Scotland: a peatland stream and a reservoir in a catchment with high percentage peat cover. Samples were collected monthly at both sites from May 2014 to May 2015 and from the stream system during two rainfall events. DOC concentrations, absorbance properties and fluorescence characteristics were measured to investigate characteristics of the photochemically labile fraction of DOC. CO2 and CO produced by irradiation were also measured to determine gaseous photoproduction and intrinsic sample photoreactivity. Significant variation was seen in the photoreactivity of DOC between the two systems, with total irradiation-induced changes typically 2 orders of magnitude greater at the high-DOC stream site. This is attributed to longer water residence times in the reservoir rendering a higher proportion of the DOC recalcitrant to photo-processing. During the experimental irradiation, 7 % of DOC in the stream water samples was photochemically reactive and direct conversion to CO2 accounted for 46 % of the measured DOC loss. Rainfall events were identified as important in replenishing photoreactive material in the stream, with lignin phenol data indicating mobilisation of fresh DOC derived from woody vegetation in the upper catchment. This study shows that peatland catchments produce significant volumes of aromatic DOC and that photoreactivity of this DOC is greatest in headwater streams; however, an improved understanding of water residence times and DOC input-output along the source to sea aquatic pathway is required to determine the fate of peatland carbon.

The Universe Adventure - Teachers

Science.gov Websites

Go Teachers The Universe Adventure provides a variety of supplementary resources to bring cosmology Bangs Activity .doc .rtf List of Relevant California Science Standards .doc .rtf Class Discussion Calendar" Activity .doc .rtf Practice with Orders of Magnitude Activity .doc .rtf Ordering the Events

Influence of natural dissolved organic carbon on the bioavailability of mercury to a freshwater alga

USGS Publications Warehouse

Gorski, P.R.; Armstrong, D.E.; Hurley, J.P.; Krabbenhoft, D.P.

2008-01-01

Bioavailability of mercury (Hg) to Selenastrum capricornutum was assessed in bioassays containing field-collected freshwater of varying dissolved organic carbon (DOC) concentrations. Bioconcentration factor (BCF) was measured using stable isotopes of methylmercury (MeHg) and inorganic Hg(II). BCFs for MeHg in low-DOC lake water were significantly larger than those in mixtures of lake water and high-DOC river water. The BCF for MeHg in rainwater (lowest DOC) was the largest of any treatment. Rainwater and lake water also had larger BCFs for Hg(II) than river water. Moreover, in freshwater collected from several US and Canadian field sites, BCFs for Hg(II) and MeHg were low when DOC concentrations were >5 mg L-1. These results suggest high concentrations of DOC inhibit bioavailability, while low concentrations may provide optimal conditions for algal uptake of Hg. However, variability of BCFs at low DOC indicates that DOC composition or other ligands may determine site-specific bioavailability of Hg.

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

PubMed

Stegen, James C; Johnson, Tim; Fredrickson, James K; Wilkins, Michael J; Konopka, Allan E; Nelson, William C; Arntzen, Evan V; Chrisler, William B; Chu, Rosalie K; Fansler, Sarah J; Graham, Emily B; Kennedy, David W; Resch, Charles T; Tfaily, Malak; Zachara, John

2018-02-08

The hyporheic corridor (HC) encompasses the river-groundwater continuum, where the mixing of groundwater (GW) with river water (RW) in the HC can stimulate biogeochemical activity. Here we propose a novel thermodynamic mechanism underlying this phenomenon and reveal broader impacts on dissolved organic carbon (DOC) and microbial ecology. We show that thermodynamically favorable DOC accumulates in GW despite lower DOC concentration, and that RW contains thermodynamically less-favorable DOC, but at higher concentrations. This indicates that GW DOC is protected from microbial oxidation by low total energy within the DOC pool, whereas RW DOC is protected by lower thermodynamic favorability of carbon species. We propose that GW-RW mixing overcomes these protections and stimulates respiration. Mixing models coupled with geophysical and molecular analyses further reveal tipping points in spatiotemporal dynamics of DOC and indicate important hydrology-biochemistry-microbial feedbacks. Previously unrecognized thermodynamic mechanisms regulated by GW-RW mixing may therefore strongly influence biogeochemical and microbial dynamics in riverine ecosystems.

Fluvial dissolved organic carbon composition varies spatially and seasonally in a small catchment draining a wind farm and felled forestry.

PubMed

Zheng, Ying; Waldron, Susan; Flowers, Hugh

2018-06-01

Assessing whether land use, from activities such as wind farm construction and tree-felling, impacts on terrestrial C delivery to rivers has focused on quantifying the loss of dissolved organic carbon (DOC), and not the composition changes. Here we explore how land use influences DOC composition by considering fluvial DOC concentration, [DOC], and spectrophotometric composition of a river draining a peat-rich catchment. We find that in this 5.7km 2 catchment differences occur in both the concentration and composition of the DOC in its sub-catchments. This is attributed to differences in how land was used: one tributary (D-WF) drains an area with wind farm construction and forestry in the headwaters, and one tributary (D-FF) drains an area with felled plantation trees. Generally, [DOC] in both streams showed similar seasonal variation, and autumn maxima. However, the felled catchment had greater mean [DOC] than the wind farm catchment. The SUVA 254 and E 4 /E 6 indicated DOC in both streams had similar aromaticity and fulvic:humic acid for most of the time, but SUVA 410 and E 2 /E 4 indicated less DOC humification in the felled catchment. This may be due to young DOC from the breakdown of residual branches and roots, or more humification in soils in the wind farm area. During the dry months, DOC composition showed more spatial variation: the D-WF DOC had smaller SUVA 254 (less total aromatic material) and SUVA 410 (fewer humic substances). The decreased E 2 /E 4 in both streams indicated the total aromatic carbon decreased more than humic substances content. Moreover, the larger E 4 /E 6 for D-WF in summer indicated that the humic substances were richer in fulvic acids than humic acids. Soil disturbance associated with forestry-felling likely contributed to the higher [DOC] and release of less-humified material in D-FF. This research indicates drivers of different DOC concentration and composition can exist even in small catchments. Copyright © 2018 Elsevier B.V. All rights reserved.

Comparing Stream DOC Fluxes from Sensor- and Sample-Based Approaches

NASA Astrophysics Data System (ADS)

Shanley, J. B.; Saraceno, J.; Aulenbach, B. T.; Mast, A.; Clow, D. W.; Hood, K.; Walker, J. F.; Murphy, S. F.; Torres-Sanchez, A.; Aiken, G.; McDowell, W. H.

2015-12-01

DOC transport by streamwater is a significant flux that does not consistently show up in ecosystem carbon budgets. In an effort to quantify stream DOC flux, we analyzed three to four years of high-frequency in situ fluorescing dissolved organic matter (FDOM) concentrations and turbidity measured by optical sensors at the five diverse forested and/or alpine headwater sites of the U.S. Geological Survey (USGS) Water, Energy, and Biogeochemical Budgets (WEBB) program. FDOM serves as a proxy for DOC. We also took discrete samples over a range of hydrologic conditions, using both manual weekly and automated event-based sampling. After compensating FDOM for temperature effects and turbidity interference - which was successful even at the high-turbidity Luquillo, PR site -- we evaluated the DOC-FDOM relation based on discrete sample DOC analyses matched to corrected FDOM at the time of sampling. FDOM was a moderately robust predictor of DOC, with r2 from 0.60 to more than 0.95 among sites. We then formed continuous DOC time series by two independent approaches: (1) DOC predicted from FDOM; and (2) the composite method, based on modeled DOC from regression on stream discharge, season, air temperature, and time, forcing the model to observations and adjusting modeled concentrations between observations by linearly-interpolated model residuals. DOC flux from each approach was then computed directly as concentration times discharge. DOC fluxes based on the sensor approach were consistently greater than the sample-based approach. At Loch Vale, CO (2.5 years) and Panola Mountain GA (1 year), the difference was 5-17%. At Sleepers River, VT (3 years), preliminary differences were greater than 20%. The difference is driven by the highest events, but we are investigating these results further. We will also present comparisons from Luquillo, PR, and Allequash Creek, WI. The higher sensor-based DOC fluxes could result from their accuracy during hysteresis, which is difficult to model. In at least one case the higher sensor-based DOC flux was linked to an unsampled event outside the range of the concentration model. Sensors require upkeep and vigilance with the data, but have the potential to yield more accurate fluxes than sample-based approaches.

Modelling impacts of temperature, and acidifying and eutrophying deposition on DOC trends

NASA Astrophysics Data System (ADS)

Sawicka, Kasia; Rowe, Ed; Evans, Chris; Monteith, Don; Vanguelova, Elena; Wade, Andrew; Clark, Joanna

2017-04-01

Surface water dissolved organic carbon (DOC) concentrations in large parts of the northern hemisphere have risen over the past three decades, raising concern about enhanced contributions of carbon to the atmosphere and seas and oceans. The effect of declining acid deposition has been identified as a key control on DOC trends in soil and surface waters, since pH and ionic strength affect sorption and desorption of DOC. However, since DOC is derived mainly from recently-fixed carbon, and organic matter decomposition rates are considered sensitive to temperature, uncertainty persists regarding the extent to the relative importance of different drivers that affect these upward trends. We ran the dynamic model MADOC (Model of Acidity and Soil Organic Carbon) for a range of UK soils (podzols, gleysols and peatland), for which the time-series were available, to consider the likely relative importance of decreased deposition of sulphate and chloride, accumulation of reactive N, and higher temperatures, on DOC production in different soils. Modelled patterns of DOC change generally agreed favourably with measurements collated over 10-20 years, but differed markedly between sites. While the acidifying effect of sulphur deposition appeared to be the predominant control on the observed soil water DOC trends in all the soils considered other than a blanket peat, the model suggested that over the long term, the effects of nitrogen deposition on N-limited soils may have been sufficient to elevate the DOC recovery trajectory significantly. The second most influential cause of rising DOC in the model simulations was N deposition in ecosystems that are N-limited and respond with stimulated plant growth. Although non-marine chloride deposition made some contribution to acidification and recovery, it was not amongst the main drivers of DOC change. Warming had almost no effect on modelled historic DOC trends, but may prove to be a significant driver of DOC in future via its influence on nutrient availability and productivity. This suggests that current and future DOC concentrations could also exceed preindustrial levels due to the increased productivity of N enriched ecosystems, having important implications for drinking water catchment management and the setting and pursuit of appropriate restoration targets.

Catchment-Scale Sampling Reveals the Consistent Function of the Sediment-Water Interface to Remove Landscape Scale Dissolved Organic Carbon Properties

NASA Astrophysics Data System (ADS)

Lee-Cullin, J. A.; Zarnetske, J. P.; Wiewiora, E.; Ruhala, S.; Hampton, T. B.

2016-12-01

Dissolved organic carbon (DOC) is a critical component to biogeochemical cycling and water quality in surface waters. As DOC moves through stream networks, from headwaters to higher order streams, the sediment-water interface (SWI), where streams and groundwater readily interact, exerts a strong influence on DOC concentrations and compositional characteristics (i.e., molecular properties). Few studies examine SWI patterns at larger spatial scales, instead focusing primarily on site-level studies because sampling in the SWI is methodologically time and labor intensive. It is presently unknown how land use and landcover influence the fate of DOC in the SWI and therefore the function of the SWI on catchment-scale DOC conditions. Here, we performed a catchment-scale, high spatial-resolution SWI sampling campaign to test how landscape pattern DOC signatures are propagated into the stream and groundwater, and to assess the fate of these signatures when DOC travels through the SWI. We sampled across 39 sites composed of first-, second-, and third-order locations in a lowland, third-order catchment composed of diverse landscape units and properties, including wetland, upland forest, and agriculture. At each of these locations, surface water, groundwater, and SWI water were collected, including six discrete depths across the SWI. The major land use and landcover properties were also determined for each of these locations. We developed two simple generalized linear models to identify the landscape properties with greatest explanatory power for DOC conditions - one for stream water and one for groundwater. The correlation between landscape properties and surface water DOC characteristics was stronger than between landscape properties and groundwater DOC characteristics. To test if the DOC properties from surface and groundwater were preserved or removed by the SWI, the resulting best-fit models for each water source were used to predict the DOC conditions across the SWI. The models were unable to predict SWI DOC conditions, indicating that the landscape signature present in both the surface water and groundwater is removed by processes occurring in the SWI. Overall, this suggests that the SWI functions as and effective zone for processing the landscape-derived DOC signatures.

Catchment-Scale Sampling Reveals the Consistent Function of the Sediment-Water Interface to Remove Landscape Scale Dissolved Organic Carbon Properties

NASA Astrophysics Data System (ADS)

Lee-Cullin, J. A.; Zarnetske, J. P.; Wiewiora, E.; Ruhala, S.; Hampton, T. B.

2017-12-01

Dissolved organic carbon (DOC) is a critical component to biogeochemical cycling and water quality in surface waters. As DOC moves through stream networks, from headwaters to higher order streams, the sediment-water interface (SWI), where streams and groundwater readily interact, exerts a strong influence on DOC concentrations and compositional characteristics (i.e., molecular properties). Few studies examine SWI patterns at larger spatial scales, instead focusing primarily on site-level studies because sampling in the SWI is methodologically time and labor intensive. It is presently unknown how land use and landcover influence the fate of DOC in the SWI and therefore the function of the SWI on catchment-scale DOC conditions. Here, we performed a catchment-scale, high spatial-resolution SWI sampling campaign to test how landscape pattern DOC signatures are propagated into the stream and groundwater, and to assess the fate of these signatures when DOC travels through the SWI. We sampled across 39 sites composed of first-, second-, and third-order locations in a lowland, third-order catchment composed of diverse landscape units and properties, including wetland, upland forest, and agriculture. At each of these locations, surface water, groundwater, and SWI water were collected, including six discrete depths across the SWI. The major land use and landcover properties were also determined for each of these locations. We developed two simple generalized linear models to identify the landscape properties with greatest explanatory power for DOC conditions - one for stream water and one for groundwater. The correlation between landscape properties and surface water DOC characteristics was stronger than between landscape properties and groundwater DOC characteristics. To test if the DOC properties from surface and groundwater were preserved or removed by the SWI, the resulting best-fit models for each water source were used to predict the DOC conditions across the SWI. The models were unable to predict SWI DOC conditions, indicating that the landscape signature present in both the surface water and groundwater is removed by processes occurring in the SWI. Overall, this suggests that the SWI functions as and effective zone for processing the landscape-derived DOC signatures.

Character, quality and bioavailability of Dissolved Organic Carbon (DOC) in a boreal stream network (Invited)

NASA Astrophysics Data System (ADS)

Laudon, H.; Berggren, M.; Agren, A.; Jansson, M.

2010-12-01

The conceptual understanding of the role of terrestrially derived dissolved organic carbon (DOC) in freshwaters has been changing rapidly. While it was once considered mainly a pool of recalcitrant compounds, DOC is now better known for its interactivity and ability to affect both the biogeochemistry and ecology of streams, rivers and lakes. Here we summarize the recent work from the multi-investigatory project conducted in the Krycklan Catchment Study in Sweden with an emphasis on the spatial and temporal variability of the character and bioavailability of DOC. In total, 15 streams and their adjacent soils have been investigated. The streams cover a forest-wetland gradient, spanning from 0% to 69% wetland coverage (hence with a 100% to 31% forest cover). Lower values of the ratio between absorbance measured at 254 nm and 365 nm (A254/A365), in both soil plots and streams, indicated that wetland-derived DOC has a higher average molecular weight than forest DOC. Higher SUVA254 (DOC specific ultraviolet absorption at 254 nm) in wetland runoff indicated more aromatic DOC from wetlands than forests. In accordance, low molecular weight non-aromatic compounds such as free organic acids (OA), amino acids (AA) and carbohydrates (CH) had higher quantities in the forested streams. We have shown that a variety of the OA, AA and CH compounds can be significantly assimilated by bacteria, meeting 15-100% of the bacterial carbon demand and explaining most of the observed variance in bacterial growth efficiency. We can now also show that in small homogenous catchments, the hydrological functioning provides a first order control on the temporal variability of stream water DOC and its quality. As a consequence, streams with heterogeneous catchments undergo a temporal switch in the DOC source. In a typical boreal catchment of 10-20% wetlands, DOC originates predominantly from wetland sources during low flow conditions whereas the major source of DOC originates from forested areas of the catchment during high flow resulting in dramatic shifts in the character and bioavailability of DOC during different flow conditions. By connecting knowledge about the sources and quality of DOC with detailed hydrological process understanding, an improved representation of stream water DOC regulation can be provided. This work also illustrates that the sensitivity of stream water DOC in the boreal landscape ultimately depends on how individual landscape elements are affected, the proportion of these landscape elements and how these changes are propagated downstream.

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stegen, James C.; Johnson, Tim; Fredrickson, James K.

The hyporheic corridor (HC) is a critical component of riverine ecosystems that encompasses the river-11 groundwater continuum. The mixing of groundwater (GW) with river water (RW) in the HC can 12 stimulate biogeochemical activity, and here we (i) propose a novel thermodynamic mechanism 13 underlying this phenomenon, and (ii) reveal broader impacts on dissolved organic carbon (DOC) 14 biogeochemistry and microbial ecology. We show that thermodynamically-favorable DOC 15 accumulates in GW despite decreases in DOC concentration along subsurface flow paths, and that RW 16 contains less thermodynamically-favorable DOC, but at higher concentrations. This indicates that DOC 17 in GW ismore » protected from microbial oxidation by low total energy contained within the DOC pool, while 18 RW DOC is protected by lower thermodynamic favorability of carbon species. We propose that GW-19 RW mixing overcomes these protection mechanisms and stimulates respiration. Mixing models 20 coupled with time-lapse electrical resistance tomography revealed that stimulated respiration leads 21 to tipping points in spatiotemporal dynamics of DOC across the HC. Further, shifts in DOC speciation 22 and biochemical pathways were associated with shifts in microbiome composition, highlighting 23 feedbacks among hydrology, DOC biochemistry, and microbial ecology. These results reveal that 24 previously unrecognized thermodynamic-based mechanisms regulated by GW-RW mixing can strongly 25 influence biogeochemical and microbial dynamics in riverine ecosystems.« less

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

DOE PAGES

Stegen, James C.; Johnson, Tim; Fredrickson, James K.; ...

2018-02-08

The hyporheic corridor (HC) is a critical component of riverine ecosystems that encompasses the river-11 groundwater continuum. The mixing of groundwater (GW) with river water (RW) in the HC can 12 stimulate biogeochemical activity, and here we (i) propose a novel thermodynamic mechanism 13 underlying this phenomenon, and (ii) reveal broader impacts on dissolved organic carbon (DOC) 14 biogeochemistry and microbial ecology. We show that thermodynamically-favorable DOC 15 accumulates in GW despite decreases in DOC concentration along subsurface flow paths, and that RW 16 contains less thermodynamically-favorable DOC, but at higher concentrations. This indicates that DOC 17 in GW ismore » protected from microbial oxidation by low total energy contained within the DOC pool, while 18 RW DOC is protected by lower thermodynamic favorability of carbon species. We propose that GW-19 RW mixing overcomes these protection mechanisms and stimulates respiration. Mixing models 20 coupled with time-lapse electrical resistance tomography revealed that stimulated respiration leads 21 to tipping points in spatiotemporal dynamics of DOC across the HC. Further, shifts in DOC speciation 22 and biochemical pathways were associated with shifts in microbiome composition, highlighting 23 feedbacks among hydrology, DOC biochemistry, and microbial ecology. These results reveal that 24 previously unrecognized thermodynamic-based mechanisms regulated by GW-RW mixing can strongly 25 influence biogeochemical and microbial dynamics in riverine ecosystems.« less

Mineralocorticoid receptor blockade but not steroid withdrawal reverses renal fibrosis in deoxycorticosterone/salt rats.

PubMed

Lam, Emily Y M; Funder, John W; Nikolic-Paterson, David J; Fuller, Peter J; Young, Morag J

2006-07-01

The pathophysiologic effects of nonepithelial mineralocorticoid receptor (MR) activation include vascular inflammation followed by renal and cardiac remodeling in experimental animals. We have recently shown that MR blockade can reverse established cardiac fibrosis and vascular inflammation; the present study explores whether a similar protection is seen in renal tissue. Rats were uninephrectomized and maintained on 0.9% NaCl solution to drink and treated as follows: control, vehicle; deoxycorticosterone (DOC), 20 mg/wk sc for 4 wk and then killed; DOC for 8 wk; DOC for 4 wk and no steroid for wk 5-8; DOC for 8 wk and eplerenone 100 mg/kg.d in the food for wk 5-8. DOC increased renal collagen at 4 and 8 wk; rats given DOC for 4 wk and killed at 8 wk showed levels of fibrosis identical with those killed at 4 wk, whereas rats given DOC for 8 wk plus eplerenone for wk 5-8 were indistinguishable from control. The inflammatory markers ED-1, osteopontin, and cyclooxygenase-2 remained significantly elevated despite the withdrawal of DOC (DOC404), whereas eplerenone restored cyclooxygenase-2 expression (but not that of ED-1 or osteopontin) to control levels. In addition, markers of oxidative stress and TGFbeta were determined. We hypothesize that continuing tubular inflammation and fibrosis despite DOC withdrawal indicates that the renal tissue may reflect MR activation in the context of tissue damage.

Regulation of stream water dissolved organic carbon concentrations ([DOC]) during snowmelt in forest streams; the role of discharge, winter climate and memory effects

NASA Astrophysics Data System (ADS)

Ågren, A.; Haei, M.; Öquist, M.; Buffam, I.; Ottosson-Löfvenius, M.; Kohler, S.; Bishop, K.; Blomkvist, P.; Laudon, H.

2011-12-01

Using 15 year stream records from two forested northern boreal catchments, coupled with soil frost experiments in the riparian zone, we demonstrate the complex inter-annual control on [DOC] and export during snowmelt. Stream [DOC] varied by a factor of 2 during those 15 years with no consistent trend. Based on our long-term analysis, we demonstrate, for the first time, that stream water [DOC] is strongly linked to the climatic conditions during the preceding winter, but that there is also a long-term memory effect in the catchment soils, related to the extent of the previous export from the catchment. Hydrology had a first order control on the inter-annual variation in concentrations, and the length of the winter was more important than the memory effect. By removing the effect of discharge on [DOC], using a conceptual hydrological model, we could detect processes that would otherwise have been overshadowed. A short and intense snowmelt gave higher [DOC] in the stream. During a prolonged snowmelt, one soil layer at the time might have been "flushed" from easily exported DOC, resulting in slightly lower stream [DOC] during such years. We found that longer and colder winters resulted in higher [DOC] during the subsequent snowmelt. A soil frost manipulation experiment in the riparian soils of the study catchment showed that the DOC concentrations in the soil water increased with the duration of the soil frost. A high antecedent DOC export during the preceding summer and autumn resulted in lower concentrations during the following spring, indicating a long-term "memory effect" of the catchment soils. In a nearby stream draining mire, we found a different response to hydrology but similar response to climate and memory effect. The inter-annual variation in snowmelt DOC exports was mostly controlled by the amount of runoff, but the variability in [DOC] also exerted a significant control on the exports, accounting for 15% of the variance in exports. We conclude that winter climatic conditions can play a substantial role in controlling stream [DOC] in ways not previously understood. These findings are especially important for northern latitude regions expected to be most affected by climate change. It's difficult to directly translate this to a future climate change prediction. If warmer winters with less insulating snow cover increase the soil frost, the results from the soil frost manipulation experiment then suggest increasing [DOC] in a future climate. At the same time the statistical analysis of the stream records suggest that a shorter and warmer winter would decrease the [DOC]. Our results do, however, highlight the role of winter climate for regulating DOC in areas with seasonally frozen soils which should be considered when resolving the sensitivity of stream [DOC] to global environmental change.

Impact of hurricanes on the flux of rainwater and Cape Fear River water dissolved organic carbon to Long Bay, southeastern United States

NASA Astrophysics Data System (ADS)

Avery, G. Brooks; Kieber, Robert J.; Willey, Joan D.; Shank, G. Christopher; Whitehead, Robert F.

2004-09-01

The hurricane flux of rain and river water dissolved organic carbon (DOC) to Long Bay located on the southeastern coast of the United States was determined for four hurricanes that made landfall in the Cape Fear region of North Carolina. Riverine flux of DOC following hurricanes Fran (1996) and Floyd (1999) represented one third and one half of the entire annual river flux of DOC to Long Bay, respectively. The majority of this DOC was recalcitrant and not available for biological consumption. The high flux of DOC from hurricane Floyd resulted from extremely high precipitation amounts (in excess of 50 cm) associated with the hurricane and subsequent flooding. High riverine DOC fluxes were observed following hurricane Fran but not hurricanes Bertha (1996) and Bonnie (1998). The westerly path of Fran deposited rain inland along the Cape Fear River watershed, causing high river flow conditions, while Bonnie and Bertha took an eastern path, resulting in a minimal effect to the Cape Fear River flow rates. The rainwater flux of total DOC to Long Bay from the four hurricanes was not as dramatic as that observed for riverine fluxes. However, unlike river water DOC that is refractory, rainwater DOC is highly labile. Rainwater from the four hurricanes in this study deposited 2-5 times the DOC deposited in an average storm. This represented a flux of 3-9% of the entire annual budget of bioavailable DOC to Long Bay being deposited over a 1 or 2 day period, likely spurring short-term secondary productivity following the hurricanes.

Sources, bioavailability, and photoreactivity of dissolved organic carbon in the Sacramento-San Joaquin River Delta

USGS Publications Warehouse

Stepanauskas, R.; Moran, M.A.; Bergamaschi, B.A.; Hollibaugh, J.T.

2005-01-01

We analyzed bioavailability, photoreactivity, fluorescence, and isotopic composition of dissolved organic carbon (DOC) collected at 13 stations in the Sacramento-San Joaquin River Delta during various seasons to estimate the persistence of DOC from diverse shallow water habitat sources. Prospective large-scale wetland restorations in the Delta may change the amount of DOC available to the food web as well as change the quality of Delta water exported for municipal use. Our study indicates that DOC contributed by Delta sources is relatively refractory and likely mostly the dissolved remnants of vascular plant material from degrading soils and tidal marshes rather than phytoplankton production. Therefore, the prospective conversion of agricultural land into submerged, phytoplankton-dominated habitats may reduce the undesired export of DOC from the Delta to municipal users. A median of 10% of Delta DOC was rapidly utilizable by bacterioplankton. A moderate dose of simulated solar radiation (286 W m-2 for 4 h) decreased the DOC bioavailability by an average of 40%, with a larger relative decrease in samples with higher initial DOC bioavailability. Potentially, a DOC-based microbial food web could support ???0.6 ?? 109 g C of protist production in the Delta annually, compared to ???17 ?? 109 g C phytoplankton primary production. Thus, DOC utilization via the microbial food web is unlikely to play an important role in the nutrition of Delta zooplankton and fish, and the possible decrease in DOC concentration due to wetland restoration is unlikely to have a direct effect on Delta fish productivity. ?? Springer 2005.

Intrinsic Controls of Groundwater-Surface Water Dissolved Organic Carbon Quality and Quantity on Hyporheic Carbon Oxidation.

NASA Astrophysics Data System (ADS)

Garayburu-Caruso, V. A.; Stegen, J.; Graham, E.

2017-12-01

Inputs of dissolved organic carbon (DOC) and nutrients from groundwater (GW) and surface water (SW) to the hyporheic zone strongly influence biogeochemical processes. Despite increased research efforts, we still lack a mechanistic understanding of the conditions driving elevated hyporheic metabolism. This work explores hyporheic carbon oxidation from a thermodynamic perspective by evaluating changes in metabolic rates within hyporheic zone sediments in response to changes on DOC concentration and thermodynamic profiles that are characteristic of GW and SW sources. We hypothesize that GW DOC is protected from microbial oxidation due to low concentration and that SW DOC is protected due low thermodynamic favorability. Further, we propose that GW-SW mixing can simultaneously overcome both limitations and stimulate carbon oxidation. Hyporheic sediments from the Hanford site in Richland, WA were exposed to ambient, 2-,5- and 10-fold concentrations of natural DOC from SW and GW sources, separately, and incubated at in-situ temperature. The two DOC sources supply contrasting thermodynamic profiles, with GW providing lower concentration but more thermodynamically favorable DOC and SW higher concentration, more recalcitrant DOC. Across DOC treatments we characterized time series of oxygen concentration, DOC concentration, and pH as well as endpoint measurements of DOC thermodynamics using Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS). Our results suggest that hyporheic metabolism of distinct carbon pools (GW or SW) can be limited by concentration or thermodynamic favorability. Our work provides an experimental approach to contribute to mechanistic understanding of freshwater carbon oxidation, and a process-based foundation for the development of watershed-scale hydrobiogeochemical models.

Modeling nonlinear responses of DOC transport in boreal catchments in Sweden

NASA Astrophysics Data System (ADS)

Kasurinen, Ville; Alfredsen, Knut; Ojala, Anne; Pumpanen, Jukka; Weyhenmeyer, Gesa A.; Futter, Martyn N.; Laudon, Hjalmar; Berninger, Frank

2016-07-01

Stream water dissolved organic carbon (DOC) concentrations display high spatial and temporal variation in boreal catchments. Understanding and predicting these patterns is a challenge with great implications for water quality projections and carbon balance estimates. Although several biogeochemical models have been used to estimate stream water DOC dynamics, model biases common during both rain and snow melt-driven events. The parsimonious DOC-model, K-DOC, with 10 calibrated parameters, uses a nonlinear discharge and catchment water storage relationship including soil temperature dependencies of DOC release and consumption. K-DOC was used to estimate the stream water DOC concentrations over 5 years for eighteen nested boreal catchments having total area of 68 km2 (varying from 0.04 to 67.9 km2). The model successfully simulated DOC concentrations during base flow conditions, as well as, hydrological events in catchments dominated by organic and mineral soils reaching NSEs from 0.46 to 0.76. Our semimechanistic model was parsimonious enough to have all parameters estimated using statistical methods. We did not find any clear differences between forest and mire-dominated catchments that could be explained by soil type or tree species composition. However, parameters controlling slow release and consumption of DOC from soil water behaved differently for small headwater catchments (less than 2 km2) than for those that integrate larger areas of different ecosystem types (10-68 km2). Our results emphasize that it is important to account for nonlinear dependencies of both, soil temperature, and catchment water storage, when simulating DOC dynamics of boreal catchments.

Close-Out Report: North Area, Revision 0, LCP Chemicals-Georgia, Brunswick, Georgia

EPA Pesticide Factsheets

December 1997 removal close-out report to document response activities in areas north of B-Street at the LCP Chemicals Superfund Site, GA. Region ID: 04 DocID: 10879193, DocDate: 12-01-1997 Region ID: 04 DocID: 10879193, DocDate: 12-01-1997

pH-Responsive Micelle-Based Cytoplasmic Delivery System for Induction of Cellular Immunity.

PubMed

Yuba, Eiji; Sakaguchi, Naoki; Kanda, Yuhei; Miyazaki, Maiko; Koiwai, Kazunori

2017-11-04

(1) Background: Cytoplasmic delivery of antigens is crucial for the induction of cellular immunity, which is an important immune response for the treatment of cancer and infectious diseases. To date, fusogenic protein-incorporated liposomes and pH-responsive polymer-modified liposomes have been used to achieve cytoplasmic delivery of antigen via membrane rupture or fusion with endosomes. However, a more versatile cytoplasmic delivery system is desired for practical use. For this study, we developed pH-responsive micelles composed of dilauroyl phosphatidylcholine (DLPC) and deoxycholic acid and investigated their cytoplasmic delivery performance and immunity-inducing capability. (2) Methods: Interaction of micelles with fluorescence dye-loaded liposomes, intracellular distribution of micelles, and antigenic proteins were observed. Finally, antigen-specific cellular immune response was evaluated in vivo using ELIspot assay. (3) Results: Micelles induced leakage of contents from liposomes via lipid mixing at low pH. Micelles were taken up by dendritic cells mainly via macropinocytosis and delivered ovalbumin (OVA) into the cytosol. After intradermal injection of micelles and OVA, OVA-specific cellular immunity was induced in the spleen. (4) Conclusions: pH-responsive micelles composed of DLPC and deoxycholic acid are promising as enhancers of cytosol delivery of antigens and the induction capability of cellular immunity for the treatment of cancer immunotherapy and infectious diseases.

Surface changes and polymyxin interactions with a resistant strain of Klebsiella pneumoniae.

PubMed

Velkov, Tony; Deris, Zakuan Z; Huang, Johnny X; Azad, Mohammad A K; Butler, Mark; Sivanesan, Sivashangarie; Kaminskas, Lisa M; Dong, Yao-Da; Boyd, Ben; Baker, Mark A; Cooper, Matthew A; Nation, Roger L; Li, Jian

2014-05-01

This study examines the interaction of polymyxin B and colistin with the surface and outer membrane components of a susceptible and resistant strain of Klebsiella pneumoniae. The interaction between polymyxins and bacterial membrane and isolated LPS from paired wild type and polymyxin-resistant strains of K. pneumoniae were examined with N-phenyl-1-naphthylamine (NPN) uptake, fluorometric binding and thermal shift assays, lysozyme and deoxycholate sensitivity assays, and by (1)H NMR. LPS from the polymyxin-resistant strain displayed a reduced binding affinity for polymyxins B and colistin in comparison with the wild type LPS. The outer membrane NPN permeability of the resistant strain was greater compared with the susceptible strain. Polymyxin exposure enhanced the permeability of the outer membrane of the wild type strain to lysozyme and deoxycholate, whereas polymyxin concentrations up to 32 mg/ml failed to permeabilize the outer membrane of the resistant strain. Zeta potential measurements revealed that mid-logarithmic phase wild type cells exhibited a greater negative charge than the mid-logarithmic phase-resistant cells. Taken together, our findings suggest that the resistant derivative of K. pneumoniae can block the electrostatically driven first stage of polymyxin action, which thereby renders the hydrophobically driven second tier of polymyxin action on the outer membrane inconsequential.

Reduction-sensitive micelles self-assembled from amphiphilic chondroitin sulfate A-deoxycholic acid conjugate for triggered release of doxorubicin.

PubMed

Liu, Hongxia; Wu, Shuqin; Yu, Jingmou; Fan, Dun; Ren, Jin; Zhang, Lei; Zhao, Jianguo

2017-06-01

Reduction-sensitive chondroitin sulfate A (CSA)-based micelles were developed. CSA was conjugated with deoxycholic acid (DOCA) via a disulfide linkage. The bioreducible conjugate (CSA-ss-DOCA) can form self-assembled micelles in aqueous medium. The critical micelle concentration (CMC) of CSA-ss-DOCA conjugate is 0.047mg/mL, and its mean diameter is 387nm. The anticancer drug doxorubicin (DOX) was chosen as a model drug, and was effectively encapsulated into the micelles with high loading efficiency. Reduction-sensitive micelles and reduction-insensitive control micelles displayed similar DOX release behavior in phosphate buffered saline (PBS, pH7.4). Notably, DOX release from the reduction-sensitive micelles in vitro was accelerated in the presence of 20mM glutathione-containing PBS environment. Moreover, DOX-loaded CSA-ss-DOCA (CSA-ss-DOCA/DOX) micelles exhibited intracellular reduction-responsive characteristics in human gastric cancer HGC-27 cells determined by confocal laser scanning microscopy (CLSM). Furthermore, CSA-ss-DOCA/DOX micelles demonstrated higher antitumor efficacy than reduction-insensitive control micelles in HGC-27 cells. These results suggested that reduction-sensitive CSA-ss-DOCA micelles had the potential as intracellular targeted carriers of anticancer drugs. Copyright © 2017 Elsevier B.V. All rights reserved.

Tailoring acyclovir prodrugs with enhanced antiviral activity: rational design, synthesis, human plasma stability and in vitro evaluation.

PubMed

Chayrov, Radoslav L; Stylos, Evgenios K; Chatziathanasiadou, Maria V; Chuchkov, Kiril N; Tencheva, Aleksandra I; Kostagianni, Androniki D; Milkova, Tsenka S; Angelova, Assia L; Galabov, Angel S; Shishkov, Stoyan A; Todorov, Daniel G; Tzakos, Andreas G; Stankova, Ivanka G

2018-05-19

Bile acid prodrugs have served as a viable strategy for refining the pharmaceutical profile of parent drugs through utilizing bile acid transporters. A series of three ester prodrugs of the antiherpetic drug acyclovir (ACV) with the bile acids cholic, chenodeoxycholic and deoxycholic were synthesized and evaluated along with valacyclovir for their in vitro antiviral activity against herpes simplex viruses type 1 and type 2 (HSV-1, HSV-2). The in vitro antiviral activity of the three bile acid prodrugs was also evaluated against Epstein-Barr virus (EBV). Plasma stability assays, utilizing ultra-high performance liquid chromatography coupled with tandem mass spectrometry, in vitro cytotoxicity and inhibitory experiments were conducted in order to establish the biological profile of ACV prodrugs. The antiviral assays demonstrated that ACV-cholate had slightly better antiviral activity than ACV against HSV-1, while it presented an eight-fold higher activity with respect to ACV against HSV-2. ACV-chenodeoxycholate presented a six-fold higher antiviral activity against HSV-2 with respect to ACV. Concerning EBV, the highest antiviral effect was demonstrated by ACV-chenodeoxycholate. Human plasma stability assays revealed that ACV-deoxycholate was more stable than the other two prodrugs. These results suggest that decorating the core structure of ACV with bile acids could deliver prodrugs with amplified antiviral activity.

Effect of diesel oxidation catalysts on the diesel particulate filter regeneration process.

PubMed

Lizarraga, Leonardo; Souentie, Stamatios; Boreave, Antoinette; George, Christian; D'Anna, Barbara; Vernoux, Philippe

2011-12-15

A Diesel Particulate Filter (DPF) regeneration process was investigated during aftertreatment exhaust of a simulated diesel engine under the influence of a Diesel Oxidation Catalyst (DOC). Aerosol mass spectrometry analysis showed that the presence of the DOC decreases the Organic Carbon (OC) fraction adsorbed to soot particles. The activation energy values determined for soot nanoparticles oxidation were 97 ± 5 and 101 ± 8 kJ mol(-1) with and without the DOC, respectively; suggesting that the DOC does not facilitate elementary carbon oxidation. The minimum temperature necessary for DPF regeneration was strongly affected by the presence of the DOC in the aftertreatment. The conversion of NO to NO(2) inside the DOC induced the DPF regeneration process at a lower temperature than O(2) (ΔT = 30 K). Also, it was verified that the OC fraction, which decreases in the presence of the DOC, plays an important role to ignite soot combustion.

CDOM fluorescence as a proxy of DOC concentration in natural waters: a comparison of four contrasting tropical systems.

PubMed

Rochelle-Newall, E; Hulot, F D; Janeau, J L; Merroune, A

2014-01-01

Chromophoric dissolved organic matter (CDOM) fluorescence or absorption is often proposed as a rapid alternative to chemical methods for the estimation of bulk dissolved organic carbon (DOC) concentration in natural waters. However, the robustness of this method across a wide range of systems remains to be shown. We measured CDOM fluorescence and DOC concentration in four tropical freshwater and coastal environments (estuary and coastal, tropical shallow lakes, water from the freshwater lens of two small islands, and soil leachates). We found that although this method can provide an estimation of DOC concentration in sites with low variability in DOC and CDOM sources in systems where the variability of DOC and CDOM sources are high, this method should not be used as it will lead to errors in the estimation of the bulk DOC concentration.

Google Docs in an Out-of-Class Collaborative Writing Activity

ERIC Educational Resources Information Center

Zhou, Wenyi; Simpson, Elizabeth; Domizi, Denise Pinette

2012-01-01

Google Docs, an online word processing application, is a promising tool for collaborative learning. However, many college instructors and students lack knowledge to effectively use Google Docs to enhance teaching and learning. Goals of this study include (1) assessing the effectiveness of using Google Docs in an out-of-class collaborative writing…

49 CFR 22.57 - Loan reporting requirements.

Code of Federal Regulations, 2012 CFR

2012-10-01

....dot.gov/financial/docs/Loan_Activation_DOT_F_2303-1.pdf. The Participating Lender must also provide....osdbu.dot.gov/financial/docs/Loan_Close-Out_DOT_F_2304-1.pdf. To fulfill this requirement, the....dot.gov/financial/docs/Pending_Loan_DOT_F_2306-1.xls and http://www.osdbu.dot.gov/financial/docs...

49 CFR 22.57 - Loan reporting requirements.

Code of Federal Regulations, 2013 CFR

2013-10-01

....dot.gov/financial/docs/Loan_Activation_DOT_F_2303-1.pdf. The Participating Lender must also provide....osdbu.dot.gov/financial/docs/Loan_Close-Out_DOT_F_2304-1.pdf. To fulfill this requirement, the....dot.gov/financial/docs/Pending_Loan_DOT_F_2306-1.xls and http://www.osdbu.dot.gov/financial/docs...

49 CFR 22.57 - Loan reporting requirements.

Code of Federal Regulations, 2014 CFR

2014-10-01

....dot.gov/financial/docs/Loan_Activation_DOT_F_2303-1.pdf. The Participating Lender must also provide....osdbu.dot.gov/financial/docs/Loan_Close-Out_DOT_F_2304-1.pdf. To fulfill this requirement, the....dot.gov/financial/docs/Pending_Loan_DOT_F_2306-1.xls and http://www.osdbu.dot.gov/financial/docs...

Light absorption properties of colored dissolved organic matter (CDOM) in adjacent waters of the Changjiang Estuary during a flood season: implication for DOC estimation

NASA Astrophysics Data System (ADS)

Liu, Yangyang; Shen, Fang; Li, Xiuzhen

2014-11-01

Light absorption properties of colored dissolved organic matter (CDOM) in adjacent waters of the Changjiang Estuary were investigated during the summer of 2013. CDOM absorption showed a substantial portion of the total absorption and clearly dominant among most investigation stations. It generally decreased from the northwest to the southeast, which controlled by physical mixing of fresh water and seawater as was indicated by a conservative behaviour of CDOM. CDOM absorption sharply increased during phytoplankton blooms. Similarly, dissolved organic carbon (DOC) also peaked during blooms period. However, DOC exhibited a more complex behavior relative to a simple conservative mixing, possibly attributed to multiple origins of DOC. CDOM absorption and DOC co-varied to some degree, implying a potential way of DOC estimation from CDOM absorption. However, more detailed information such as CDOM and DOC composition and more validation data were required to obtain a stable CDOM - DOC pattern. Lastly, empirical algorithms with limited data were developed to retrieve CDOM absorption. Further validation of the algorithms were needed when they were to be commonly applied.

Dissolved organic carbon in the carbon cycle of the Indian Ocean

NASA Astrophysics Data System (ADS)

Hansell, Dennis A.

Dissolved organic carbon (DOC) is one of the least quantified and least understood bioreactive pools of carbon in the Indian Ocean. Data gaps are large, with much of the central Indian Ocean not yet sampled. Here model results depict the surface distribution of DOC, which is interpreted in terms of anticipated net DOC production (13-26 Tmol C a-1), advective transport, and export to the subsurface with overturning circulation. These interpretations are tested against DOC measurements made on sections in the Arabian Sea, across the Agulhas Current, in the central Indian Ocean, and into the Bay of Bengal. The seasonality of net DOC production and consumption is evaluated in the Arabian Sea, where data density is relatively rich. DOC stocks in the upper 150 m of the western Arabian Sea increased by >1.5 mol C m-2 during the NE monsoon and disappeared rapidly during the SW monsoon. Rapid DOC removal may result in part from aggregation of dust and biogenic particles along with stripping of trace metals and DOC, perhaps as transparent exopolymer particles, from the surrounding waters.

Hyperactive external awareness against hypoactive internal awareness in disorders of consciousness using resting-state functional MRI: highlighting the involvement of visuo-motor modulation.

PubMed

He, Jiang-Hong; Yang, Yi; Zhang, Yi; Qiu, Si-You; Zhou, Zhen-Yu; Dang, Yuan-Yuan; Dai, Yi-Wu; Liu, Yi-Jun; Xu, Ru-Xiang

2014-08-01

Resting-state functional MRI (fMRI) has emerged as a valuable tool to characterize the complex states encompassing disorders of consciousness (DOC). Awareness appears to comprise two coexistent, anticorrelated components named the external and internal awareness networks. The present study hypothesizes that DOC interrupts the balance between the internal and external awareness networks. To gain more understanding of this phenomenon, the present study analyzed resting-state fMRI data from 12 patients with DOC versus 12 healthy age-matched controls. The data were explored using independent component analysis and amplitude of low-frequency fluctuation (ALFF) analysis. The results indicated that DOC deactivated midline areas associated with internal awareness. In addition, external awareness was strengthened in DOC because of increased activation in the insula, lingual gyrus, paracentral and supplementary motor area. The activity patterns suggested strengthened external awareness against weakened internal awareness in DOC. In particular, increased activity found in the insula, lingual gyrus, paracentral and supplementary motor area of patients with DOC implied possible involvement of augmented visuo-motor modulation in these patients. DOC is probably related to hyperactive external awareness opposing hypoactive internal awareness. This unique pattern of brain activity may potentially be a prognostic marker for DOC. Copyright © 2014 John Wiley & Sons, Ltd.

Dissolved oxygen as an indicator of bioavailable dissolved organic carbon in groundwater

USGS Publications Warehouse

Chapelle, Francis H.; Bradley, Paul M.; McMahon, Peter B.; Kaiser, Karl; Benner, Ron

2012-01-01

Concentrations of dissolved oxygen (DO) plotted vs. dissolved organic carbon (DOC) in groundwater samples taken from a coastal plain aquifer of South Carolina (SC) showed a statistically significant hyperbolic relationship. In contrast, DO-DOC plots of groundwater samples taken from the eastern San Joaquin Valley of California (CA) showed a random scatter. It was hypothesized that differences in the bioavailability of naturally occurring DOC might contribute to these observations. This hypothesis was examined by comparing nine different biochemical indicators of DOC bioavailability in groundwater sampled from these two systems. Concentrations of DOC, total hydrolysable neutral sugars (THNS), total hydrolysable amino acids (THAA), mole% glycine of THAA, initial bacterial cell counts, bacterial growth rates, and carbon dioxide production/consumption were greater in SC samples relative to CA samples. In contrast, the mole% glucose of THNS and the aromaticity (SUVA254) of DOC was greater in CA samples. Each of these indicator parameters were observed to change with depth in the SC system in a manner consistent with active biodegradation. These results are uniformly consistent with the hypothesis that the bioavailability of DOC is greater in SC relative to CA groundwater samples. This, in turn, suggests that the presence/absence of a hyperbolic DO-DOC relationship may be a qualitative indicator of relative DOC bioavailability in groundwater systems.

The diabetes online community: Older adults supporting self-care through peer health.

PubMed

Litchman, Michelle L; Rothwell, Erin; Edelman, Linda S

2018-03-01

The use of the diabetes online community (DOC) is growing across all age groups. The aim of this exploratory study was to describe why older adults participated in the DOC, and how DOC users interacted with their healthcare providers. Telephone interviews (N=20) were conducted with older adult DOC users (born between 1946 and 1964) living in the United States. Interviews were analyzed using qualitative content analysis adhering to rigor and reproducibility standards. Themes that emerged from the data related to DOC participation included: information to improve self-care, emotional support, belonging to a community, validation of information, cause for concern and interaction with healthcare providers. Participants used the DOC for day to day diabetes management advice and healthcare providers for medical information and care. Participants highly valued the DOC and regarded their participation as a way to increase knowledge to improve self-care and reciprocate emotional support with others for diabetes management. The DOC filled gaps in knowledge and support participants were not able to get elsewhere. The DOC serves as an important source of information and support for individuals with diabetes and may be a cost-effective strategy to augment standard diabetes care. Copyright © 2017 Elsevier B.V. All rights reserved.

Temporal Variability of Stemflow Dissolved Organic Carbon (DOC) Concentrations and Quality from Morphologically Contrasting Deciduous Canopies

NASA Astrophysics Data System (ADS)

van Stan, J. T.; Levia, D. F.; Inamdar, S. P.; Mitchell, M. J.; Mage, S. M.

2010-12-01

Dissolved organic carbon (DOC) inputs from canopy-derived hydrologic fluxes play a significant role in the terrestrial carbon budgets of forested ecosystems. However, no studies known to the authors have examined the variability of both DOC concentrations and quality for stemflow across time scales, nor has any study to date evaluated the effects of canopy structure on stemflow DOC characteristics. This investigation seeks to rectify this knowledge gap by examining the variability of stemflow DOC concentrations and quality across contrasting canopy morphologies and time scales (seasonal, storm and intrastorm). Bulk and intrastorm stemflow samples from a less dense, rough-barked, more plagiophile (Liriodendron tulipifera L. (tulip poplar)) and a denser, thin-barked, more erectophile (Fagus grandifolia Ehrh. (American beech)) canopy were collected and analyzed for DOC quality using metrics derived from UV-vis spectroscopy (E2:E3 ratio, SUVA254, select spectral slope (S), and spectral slope ratios (SR)). Our results suggest that stemflow DOC concentrations and quality change as crown architectural traits enhance or diminish hydrologic retention time within the canopy. The architecture of L. tulipifera canopies likely retards the flow of intercepted water, increasing chemical exchange with bark and foliar surfaces. UV-vis metrics indicated that this increased chemical exchange, particularly with bark surfaces, generally enhanced aromatic hydrocarbon content and increased molecular weight. Because leaf presence influenced DOC quality, stemflow DOC characteristics also varied seasonally in response to canopy condition. At the inter- and intrastorm scale, stemflow DOC concentration and quality varied with meteorological and antecedent canopy conditions. Since recent studies have linked stemflow production to preferential subsurface transport of dissolved chemistries, trends in DOC speciation and fluxes described in this study may impact soil environments within wooded ecosystems.

Geochemistry and Flux of Terrigenous Dissolved Organic Matter to the Arctic Ocean

NASA Astrophysics Data System (ADS)

Spencer, R. G.; Mann, P. J.; Hernes, P. J.; Tank, S. E.; Striegl, R. G.; Dyda, R. Y.; Peterson, B. J.; McClelland, J. W.; Holmes, R. M.

2011-12-01

Rivers draining into the Arctic Ocean exhibit high concentrations of terrigenous dissolved organic carbon (DOC) and recent studies indicate that DOC export is changing due to climatic warming and alteration in permafrost condition. The fate of exported DOC in the Arctic Ocean is of key importance for understanding the regional carbon cycle and remains a point of discussion in the literature. As part of the Arctic Great Rivers Observatory (Arctic-GRO) project, samples were collected for DOC, chromophoric dissolved organic matter (CDOM) and lignin phenols from the Ob', Yenisey, Lena, Kolyma, Mackenzie and Yukon rivers in 2009 - 2010. DOC and lignin concentrations were elevated during the spring freshet and measurements related to DOC composition indicated an increasing contribution from terrestrial vascular plant sources at this time of year (e.g. lignin carbon-normalized yield, CDOM spectral slope, SUVA254, humic-like fluorescence). CDOM absorption was found to correlate strongly with both DOC (r2=0.83) and lignin concentration (r2=0.92) across the major arctic rivers. Utilizing these relationships we modeled loads for DOC and lignin export from high-resolution CDOM measurements (daily across the freshet) to derive improved flux estimates, particularly from the dynamic spring discharge maxima period when the majority of DOC and lignin export occurs. The new load estimates for DOC and lignin are higher than previous evaluations, emphasizing that if these are more representative of current arctic riverine export, terrigenous DOC is transiting through the Arctic Ocean at a faster rate than previously thought. It is apparent that higher resolution sampling of arctic rivers is exceptionally valuable with respect to deriving accurate fluxes and we highlight the potential of CDOM in this role for future studies and the applicability of in-situ CDOM sensors.

Spatial and temporal variability in the amount and source of dissolved organic carbon: Implications for ultraviolet exposure in amphibian habitats

USGS Publications Warehouse

Brooks, P.D.; O'Reilly, C. M.; Diamond, S.A.; Campbell, D.H.; Knapp, R.; Bradford, D.; Corn, P.S.; Hossack, B.; Tonnessen, K.

2005-01-01

The amount, chemical composition, and source of dissolved organic carbon (DOC), together with in situ ultraviolet (UV-B) attenuation, were measured at 1–2 week intervals throughout the summers of 1999, 2000, and 2001 at four sites in Rocky Mountain National Park (Colorado). Eight additional sites, four in Sequoia and Kings Canyon National Park/John Muir Wilderness (California) and four in Glacier National Park (Montana), were sampled during the summer of 2000. Attenuation of UV-B was significantly related to DOC concentrations over the three years in Rocky Mountain (R2 = 0.39, F = 25.71, P < 0.0001) and across all parks in 2000 (R2 = 0.44, F = 38.25, P < 0.0001). The relatively low R2 values, however, reflect significant temporal and spatial variability in the specific attenuation per unit DOC. Fluorescence analysis of the fulvic acid DOC fraction (roughly 600–2,000 Daltons) indicated that the source of DOC significantly affected the attenuation of UV-B. Sites in Sequoia–Kings Canyon were characterized by DOC derived primarily from algal sources and showed much deeper UV-B penetration, whereas sites in Glacier and Rocky Mountain contained a mix of algal and terrestrial DOC-dominated sites, with more terrestrially dominated sites characterized by greater UV-B attenuation per unit DOC. In general, site characteristics that promoted the accumulation of terrestrially derived DOC showed greater attenuation of UV-B per unit DOC; however, catchment vegetation and soil characteristics, precipitation, and local hydrology interacted to make it difficult to predict potential exposure from DOC concentrations.

The role of irrigation runoff and winter rainfall on dissolved organic carbon loads in an agricultural watershed

USGS Publications Warehouse

Oh, Neung-Hwan; Pellerin, Brian A.; Bachand, Philip A.M.; Hernes, Peter J.; Bachand, Sandra M.; Ohara, Noriaki; Kavvas, M. Levent; Bergamaschi, Brian A.; Horwath, William R.

2013-01-01

We investigated the role of land use/land cover and agriculture practices on stream dissolved organic carbon (DOC) dynamics in the Willow Slough watershed (WSW) from 2006 to 2008. The 415 km2watershed in the northern Central Valley, California is covered by 31% of native vegetation and the remaining 69% of agricultural fields (primarily alfalfa, tomatoes, and rice). Stream discharge and weekly DOC concentrations were measured at eight nested subwatersheds to estimate the DOC loads and yields (loads/area) using the USGS developed stream load estimation model, LOADEST. Stream DOC concentrations peaked at 18.9 mg L−1 during summer irrigation in the subwatershed with the highest percentage of agricultural land use, demonstrating the strong influence of agricultural activities on summer DOC dynamics. These high concentrations contributed to DOC yields increasing up to 1.29 g m−2 during the 6 month period of intensive agricultural activity. The high DOC yields from the most agricultural subwatershed during the summer irrigation period was similar throughout the study, suggesting that summer DOC loads from irrigation runoff would not change significantly in the absence of major changes in crops or irrigation practices. In contrast, annual DOC yields varied from 0.89 to 1.68 g m−2 yr−1 for the most agricultural watershed due to differences in winter precipitation. This suggests that variability in the annual DOC yields will be largely determined by the winter precipitation, which can vary significantly from year to year. Changes in precipitation patterns and intensities as well as agricultural practices have potential to considerably alter the DOC dynamics.

Impact of catchment geophysical characteristics and climate on the regional variability of dissolved organic carbon (DOC) in surface water.

PubMed

Cool, Geneviève; Lebel, Alexandre; Sadiq, Rehan; Rodriguez, Manuel J

2014-08-15

Dissolved organic carbon (DOC) is a recognized indicator of natural organic matter (NOM) in surface waters. The aim of this paper is twofold: to evaluate the impact of geophysical characteristics, climate and ecological zones on DOC concentrations in surface waters and, to develop a statistical model to estimate the regional variability of these concentrations. In this study, multilevel statistical analysis was used to achieve three specific objectives: (1) evaluate the influence of climate and geophysical characteristics on DOC concentrations in surface waters; (2) compare the influence of geophysical characteristics and ecological zones on DOC concentrations in surface waters; and (3) develop a model to estimate the most accurate DOC concentrations in surface waters. The case study involved 115 catchments from surface waters in the Province of Quebec, Canada. Results showed that mean temperatures recorded 60 days prior to sampling, total precipitation 10 days prior to sampling and percentages of wetlands, coniferous forests and mixed forests have a significant positive influence on DOC concentrations in surface waters. The catchment mean slope had a significant negative influence on DOC concentrations in surface waters. Water type (lake or river) and deciduous forest variables were not significant. The ecological zones had a significant influence on DOC concentrations. However, geophysical characteristics (wetlands, forests and slope) estimated DOC concentrations more accurately. A model describing the variability of DOC concentrations was developed and can be used, in future research, for estimating DBPs in drinking water as well evaluating the impact of climate change on the quality of surface waters and drinking water. Copyright © 2014 Elsevier B.V. All rights reserved.

Hydrologically transported dissolved organic carbon influences soil respiration in a tropical rainforest

NASA Astrophysics Data System (ADS)

Zhou, Wen-Jun; Lu, Hua-Zheng; Zhang, Yi-Ping; Sha, Li-Qing; Schaefer, Douglas Allen; Song, Qing-Hai; Deng, Yun; Deng, Xiao-Bao

2016-10-01

To better understand the effect of dissolved organic carbon (DOC) transported by hydrological processes (rainfall, throughfall, litter leachate, and surface soil water; 0-20 cm) on soil respiration in tropical rainforests, we detected the DOC flux in rainfall, throughfall, litter leachate, and surface soil water (0-20 cm), compared the seasonality of δ13CDOC in each hydrological process, and δ13C in leaves, litter, and surface soil, and analysed the throughfall, litter leachate, and surface soil water (0-20 cm) effect on soil respiration in a tropical rainforest in Xishuangbanna, south-west China. Results showed that the surface soil intercepted 94.4 ± 1.2 % of the annual litter leachate DOC flux and is a sink for DOC. The throughfall and litter leachate DOC fluxes amounted to 6.81 and 7.23 % of the net ecosystem exchange respectively, indicating that the DOC flux through hydrological processes is an important component of the carbon budget, and may be an important link between hydrological processes and soil respiration in a tropical rainforest. Even the variability in soil respiration is more dependent on the hydrologically transported water than DOC flux insignificantly, soil temperature, and soil-water content (at 0-20 cm). The difference in δ13C between the soil, soil water (at 0-20 cm), throughfall, and litter leachate indicated that DOC is transformed in the surface soil and decreased the sensitivity indices of soil respiration of DOC flux to water flux, which suggests that soil respiration is more sensitive to the DOC flux in hydrological processes, especially the soil-water DOC flux, than to soil temperature or soil moisture.

[Characteristics of dissolved organic carbon release under inundation from typical grass plants in the water-level fluctuation zone of the Three Gorges Reservoir area].

PubMed

Tan, Qiu-Xia; Zhu, Boi; Hua, Ke-Ke

2013-08-01

The water-level fluctuation zone of the Three Gorges Reservoir (TGR) exposes in spring and summer, then, green plants especially herbaceous plants grow vigorously. In the late of September, water-level fluctuation zone of TGR goes to inundation. Meanwhile, annually accumulated biomass of plant will be submerged for decaying, resulting in organism decomposition and release a large amount of dissolved organic carbon (DOC). This may lead to negative impacts on water environment of TGR. The typical herbaceous plants from water-level fluctuation zone were collected and inundated in the laboratory for dynamic measurements of DOC concentration of overlying water. According to the determination, the DOC release rates and fluxes have been calculated. Results showed that the release process of DOC variation fitted in a parabolic curve. The peak DOC concentrations emerge averagely in the 15th day of inundation, indicating that DOC released quickly with organism decay of herbaceous plant. The release process of DOC could be described by the logarithm equation. There are significant differences between the concentration of DOC (the maximum DOC concentration is 486.88 mg x L(-1) +/- 35.97 mg x L(-1) for Centaurea picris, the minimum is 4.18 mg x L(-1) +/- 1.07 mg x L(-1) for Echinochloacrus galli) and the release amount of DOC (the maximum is 50.54 mg x g(-1) for Centaurea picris, the minimum is 6.51 mg x g(-1) for Polygonum hydropiper) due to different characteristics of plants, especially, the values of C/N of herbaceous plants. The cumulative DOC release quantities during the whole inundation period were significantly correlated with plants' C/N values in linear equations.

Physiological protective action of dissolved organic carbon on ion regulation and nitrogenous waste excretion of zebrafish (Danio rerio) exposed to low pH in ion-poor water.

PubMed

Duarte, Rafael M; Wood, Chris M; Val, Adalberto L; Smith, D Scott

2018-06-11

Dissolved organic carbon (DOC) represents a heterogeneous group of naturally-occurring molecules in aquatic environments, and recent studies have evidenced that optically dark DOCs can exert some positive effects on ionoregulatory homeostasis of aquatic organisms in acidic waters. We investigated the effects of Luther Marsh DOC, a dark allochthonous DOC, on ion regulation and N-waste excretion of zebrafish acutely exposed to either neutral or low pH in ion-poor water. In the first experiment, simultaneous exposure to pH 4.0 and DOC greatly attenuated the stimulation of Na + diffusive losses (J out Na ), and prevented the blockade of Na + uptake (J in Na ) seen in zebrafish exposed to pH 4.0 alone, resulting in much smaller disturbances in Na + net losses (J net Na ). DOC also attenuated the stimulation of net Cl - losses (J net Cl ) and ammonia excretion (J net Amm ) during acidic challenge. In the second experiment, zebrafish acclimated to DOC displayed similar regulation of J in Na and J out Na , and, therefore, reduced J net Na at pH 4.0, effects which persisted even when DOC was no longer present. Protective effects of prior acclimation to DOC on J net Cl and J net Amm at pH 4.0 also occurred, but were less marked than those on Na + balance. Urea fluxes were unaffected by the experimental treatments. Overall, these effects were clearly beneficial to the ionoregulatory homeostasis of zebrafish at low pH, and were quite similar to those seen in a recent parallel study using darker DOC from the upper Rio Negro. This suggests that dark allochthonous DOCs share some chemical properties that render fish tolerant to ionoregulatory disturbances during acidic challenge.

Feasibility of the music therapy assessment tool for awareness in disorders of consciousness (MATADOC) for use with pediatric populations.

PubMed

Magee, Wendy L; Ghetti, Claire M; Moyer, Alvin

2015-01-01

Measuring responsiveness to gain accurate diagnosis in populations with disorders of consciousness (DOC) is of central concern because these patients have such complex clinical presentations. Due to the uncertainty of accuracy for both behavioral and neurophysiological measures in DOC, combined assessment approaches are recommended. A number of standardized behavioral measures can be used with adults with DOC with minor to moderate reservations relating to the measures' psychometric properties and clinical applicability. However, no measures have been standardized for use with pediatric DOC populations. When adapting adult measures for children, confounding factors include developmental considerations for language-based items included in all DOC measures. Given the lack of pediatric DOC measures, there is a pressing need for measures that are sensitive to the complex clinical presentations typical of DOC and that can accommodate the developmental levels of pediatric populations. The music therapy assessment tool for awareness in disorders of consciousness (MATADOC) is a music-based measure that has been standardized for adults with DOC. Given its emphasis on non-language based sensory stimuli, it is well-suited to pediatric populations spanning developmental stages. In a pre-pilot exploratory study, we examined the clinical utility of this measure and explored trends for test-retest and inter-rater agreement as well as its performance against external reference standards. In several cases, MATADOC items in the visual and auditory domains produced outcomes suggestive of higher level functioning when compared to outcomes provided by other DOC measures. Preliminary findings suggest that the MATADOC provides a useful protocol and measure for behavioral assessment and clinical treatment planning with pediatric DOC. Further research with a larger sample is warranted to test a version of the MATADOC that is refined to meet developmental needs of pediatric DOC populations.

Does Litter Impart A Detectable Chemical Signal on Soil DOC? DOC Fluorescence Signatures in Soils Undergoing Long-Term Litter Manipulations

NASA Astrophysics Data System (ADS)

Lajtha, K.; Strid, A.; Lee, B. S.

2015-12-01

Soil dissolved organic carbon (DOC) is a small but crucial part of the forest carbon cycle. Characterizing the relationship between organic matter inputs to soil and DOC chemistry is crucial to understanding the ultimate fate of root carbon, fallen wood and needles. Chemical differences in the DOC pool may help to explain whether fractions are sorbed to mineral surfaces and contribute to accumulation of soil organic carbon, respired as CO2, or exported. Soil solution DOC was sampled from the detrital input and removal treatment (DIRT) plots located in the H.J. Andrews Experimental Forest, OR to determine whether detrital inputs impart a detectable signal on DOC in mineral soil. Multiple types of fresh litter extracts, along with lysimeter and soil extracts from DIRT treatment plots were characterized using UV-Vis and fluorescence spectroscopy coupled with the Cory and McKnight (2005) parallel factor analysis (PARAFAC) model. Principal component analysis of 13 unique fluorophores distinguished using PARAFAC show that litter and soil extracts (needles, wood of decomposition Class 1, Class 3 and Class 5, O-horizon, and A-horizon) each have distinct fluorescence signatures. However, while litter-leached DOC chemistry varies by litter type, neither lysimeter-collected DOC or soil extracts show statistically significant differences in fluorescence signatures among treatments, even after 17 years of litter manipulations. The lack of observed differences among DIRT treatments suggests a "Soil Blender" hypothesis whereby both abiotic and biotic mechanisms effectively homogenize organic carbon constituents within the dissolved pool. The results of this work emphasize the ability of sorption and biodegradation to homogenize soil DOC and demonstrate that fluorescence can be an effective fingerprinting technique for soil DOC composition.

Partitioning of fluorotelomer alcohols to octanol and different sources of dissolved organic carbon.

PubMed

Carmosini, Nadia; Lee, Linda S

2008-09-01

Interest in the environmental fate of fluorotelomer alcohols (FTOHs) has spurred efforts to understand their equilibrium partitioning behavior. Experimentally determined partition coefficients for FTOHs between soil/water and air/water have been reported, but direct measurements of partition coefficients for dissolved organic carbon (DOC)/water (K(doc)) and octanol/ water(K(ow)) have been lacking. Here we measured the partitioning of 8:2 and 6:2 FTOH between one or more types of DOC and water using enhanced solubility or dialysis bag techniques, and also quantified K(ow) values for 4:2 to 8:2 FTOH using a batch equilibration method. The range in measured log K(doc) values for 8:2 FTOH using the enhanced solubility technique with DOC derived from two soils, two biosolids, and three reference humic acids is 2.00-3.97 with the lowest values obtained for the biosolids and an average across all other DOC sources (biosolid DOC excluded) of 3.54 +/- 0.29. For 6:2 FTOH and Aldrich humic acid, a log K(doc) value of 1.96 +/- 0.45 was measured using the dialysis technique. These average values are approximately 1 to 2 log units lower than previously indirectly estimated K(doc) values. Overall, the affinity for DOC tends to be slightly lower than that for particulate soil organic carbon. Measured log K(ow) values for 4:2 (3.30 +/- 0.04), 6:2 (4.54 +/- 0.01), and 8:2 FTOH (5.58 +/- 0.06) were in good agreement with previously reported estimates. Using relationships between experimentally measured partition coefficients and C-atom chain length, we estimated K(doc) and K(ow) values for shorter and longer chain FTOHs, respectively, that we were unable to measure experimentally.

Feasibility of the music therapy assessment tool for awareness in disorders of consciousness (MATADOC) for use with pediatric populations

PubMed Central

Magee, Wendy L.; Ghetti, Claire M.; Moyer, Alvin

2015-01-01

Measuring responsiveness to gain accurate diagnosis in populations with disorders of consciousness (DOC) is of central concern because these patients have such complex clinical presentations. Due to the uncertainty of accuracy for both behavioral and neurophysiological measures in DOC, combined assessment approaches are recommended. A number of standardized behavioral measures can be used with adults with DOC with minor to moderate reservations relating to the measures’ psychometric properties and clinical applicability. However, no measures have been standardized for use with pediatric DOC populations. When adapting adult measures for children, confounding factors include developmental considerations for language-based items included in all DOC measures. Given the lack of pediatric DOC measures, there is a pressing need for measures that are sensitive to the complex clinical presentations typical of DOC and that can accommodate the developmental levels of pediatric populations. The music therapy assessment tool for awareness in disorders of consciousness (MATADOC) is a music-based measure that has been standardized for adults with DOC. Given its emphasis on non-language based sensory stimuli, it is well-suited to pediatric populations spanning developmental stages. In a pre-pilot exploratory study, we examined the clinical utility of this measure and explored trends for test-retest and inter-rater agreement as well as its performance against external reference standards. In several cases, MATADOC items in the visual and auditory domains produced outcomes suggestive of higher level functioning when compared to outcomes provided by other DOC measures. Preliminary findings suggest that the MATADOC provides a useful protocol and measure for behavioral assessment and clinical treatment planning with pediatric DOC. Further research with a larger sample is warranted to test a version of the MATADOC that is refined to meet developmental needs of pediatric DOC populations. PMID:26074850

Nonlinear and threshold-dominated runoff generation controls DOC export in a small peat catchment

NASA Astrophysics Data System (ADS)

Birkel, C.; Broder, T.; Biester, H.

2017-03-01

We used a relatively simple two-layer, coupled hydrology-biogeochemistry model to simultaneously simulate streamflow and stream dissolved organic carbon (DOC) concentrations in a small lead and arsenic contaminated upland peat catchment in northwestern Germany. The model procedure was informed by an initial data mining analysis, in combination with regression relationships of discharge, DOC, and element export. We assessed the internal model DOC processing based on stream DOC hysteresis patterns and 3-hourly time step groundwater level and soil DOC data for two consecutive summer periods in 2013 and 2014. The parsimonious model (i.e., few calibrated parameters) showed the importance of nonlinear and rapid near-surface runoff generation mechanisms that caused around 60% of simulated DOC load. The total load was high even though these pathways were only activated during storm events on average 30% of the monitoring time—as also shown by the experimental data. Overall, the drier period 2013 resulted in increased nonlinearity but exported less DOC (115 kg C ha-1 yr-1 ± 11 kg C ha-1 yr-1) compared to the equivalent but wetter period in 2014 (189 kg C ha-1 yr-1 ± 38 kg C ha-1 yr-1). The exceedance of a critical water table threshold (-10 cm) triggered a rapid near-surface runoff response with associated higher DOC transport connecting all available DOC pools and subsequent dilution. We conclude that the combination of detailed experimental work with relatively simple, coupled hydrology-biogeochemistry models not only allowed the model to be internally constrained but also provided important insight into how DOC and tightly coupled pollutants or trace elements are mobilized.

Seasonal Dynamics of Dissolved Organic Carbon Under Complex Circulation Schemes on a Large Continental Shelf: The Northern South China Sea

NASA Astrophysics Data System (ADS)

Meng, Feifei; Dai, Minhan; Cao, Zhimian; Wu, Kai; Zhao, Xiaozheng; Li, Xiaolin; Chen, Junhui; Gan, Jianping

2017-12-01

We examined the distribution and seasonality of dissolved organic carbon (DOC) based on a large data set collected from the northern South China Sea (NSCS) shelf under complex circulation schemes influenced by river plume, coastal upwelling, and downwelling. The highest surface values of ˜117 μmol L-1 were observed nearshore in summer suggesting high DOC supplies from the river inputs, whereas the lowest surface values of ˜62 μmol L-1 were on the outer shelf in winter due to entrainment of DOC-poor subsurface water under strengthened vertical mixing. While the summer coastal upwelling brought lower DOC from offshore depth to the nearshore surface, the winter coastal downwelling delivered higher surface DOC to the midshelf deep waters from the inner shelf fueled by the China Coastal Current (CCC) transporting relatively high DOC from the East China Sea to the NSCS. The intensified winter downwelling generated a cross-shelf DOC transport of 3.1 × 1012 g C over a large shelf area, which induced a significant depression of the NSCS DOC inventory in winter relative to in autumn. In addition to the variable physical controls, net biological production of DOC was semiquantified in both the river plume (2.8 ± 3.0 μmol L-1) and coastal upwelling (3.1 ± 1.3 μmol L-1) in summer. We demonstrated that the NSCS shelf had various origins of DOC including riverine inputs, inter-shelf transport and in situ production. Via cross-shelf transport, the accumulated DOC would be exported to and stored in the deep ocean, suggesting that continental shelves are a potentially effective carbon sink.

Effect of past peat cultivation practices on present dynamics of dissolved organic carbon.

PubMed

Frank, S; Tiemeyer, B; Bechtold, M; Lücke, A; Bol, R

2017-01-01

Peatlands are a major source of dissolved organic carbon (DOC) for aquatic ecosystems. Naturally high DOC concentrations in peatlands may be increased further by drainage. For agricultural purposes, peat has frequently been mixed with sand, but the effect of this measure on the release and cycling of DOC has rarely been investigated. This study examined the effects of (i) mixing peat with sand and (ii) water table depth (WTD) on DOC concentrations at three grassland sites on shallow organic soils. The soil solution was sampled bi-weekly for two years with suction plates at 15, 30 and 60cm depth. Selected samples were analysed for dissolved organic nitrogen (DON), δ 13 C DOM and δ 15 N DOM . Average DOC concentrations were surprisingly high, ranging from 161 to 192mgl -1 . There was no significant impact of soil organic carbon (SOC) content or WTD on mean DOC concentrations. At all sites, DOC concentrations were highest at the boundary between the SOC-rich horizon and the mineral subsoil. In contrast to the mean concentrations, the temporal patterns of DOC concentrations, their drivers and the properties of dissolved organic matter (DOM) differed between peat-sand mixtures and peat. DOC concentrations responded to changes in environmental conditions, but only after a lag period of a few weeks. At the sites with a peat-sand mixture, temperature and therefore probably biological activity determined the DOC concentrations. At the peat site, the contribution of vegetation-derived DOM was higher. The highest concentrations occurred during long, cool periods of waterlogging, suggesting a stronger physicochemical-based DOC mobilisation. Overall, these results indicate that mixing peat with sand does not improve water quality and may result in DOC losses of around 200kg DOCha -1 a -1 . Copyright © 2016 Office national des forêts. Published by Elsevier B.V. All rights reserved.

ORCHIDEE-SOM: modeling soil organic carbon (SOC) and dissolved organic carbon (DOC) dynamics along vertical soil profiles in Europe

NASA Astrophysics Data System (ADS)

Camino-Serrano, Marta; Guenet, Bertrand; Luyssaert, Sebastiaan; Ciais, Philippe; Bastrikov, Vladislav; De Vos, Bruno; Gielen, Bert; Gleixner, Gerd; Jornet-Puig, Albert; Kaiser, Klaus; Kothawala, Dolly; Lauerwald, Ronny; Peñuelas, Josep; Schrumpf, Marion; Vicca, Sara; Vuichard, Nicolas; Walmsley, David; Janssens, Ivan A.

2018-03-01

Current land surface models (LSMs) typically represent soils in a very simplistic way, assuming soil organic carbon (SOC) as a bulk, and thus impeding a correct representation of deep soil carbon dynamics. Moreover, LSMs generally neglect the production and export of dissolved organic carbon (DOC) from soils to rivers, leading to overestimations of the potential carbon sequestration on land. This common oversimplified processing of SOC in LSMs is partly responsible for the large uncertainty in the predictions of the soil carbon response to climate change. In this study, we present a new soil carbon module called ORCHIDEE-SOM, embedded within the land surface model ORCHIDEE, which is able to reproduce the DOC and SOC dynamics in a vertically discretized soil to 2 m. The model includes processes of biological production and consumption of SOC and DOC, DOC adsorption on and desorption from soil minerals, diffusion of SOC and DOC, and DOC transport with water through and out of the soils to rivers. We evaluated ORCHIDEE-SOM against observations of DOC concentrations and SOC stocks from four European sites with different vegetation covers: a coniferous forest, a deciduous forest, a grassland, and a cropland. The model was able to reproduce the SOC stocks along their vertical profiles at the four sites and the DOC concentrations within the range of measurements, with the exception of the DOC concentrations in the upper soil horizon at the coniferous forest. However, the model was not able to fully capture the temporal dynamics of DOC concentrations. Further model improvements should focus on a plant- and depth-dependent parameterization of the new input model parameters, such as the turnover times of DOC and the microbial carbon use efficiency. We suggest that this new soil module, when parameterized for global simulations, will improve the representation of the global carbon cycle in LSMs, thus helping to constrain the predictions of the future SOC response to global warming.

Nutrient dynamics across a dissolved organic carbon and burn gradient in central Siberia

NASA Astrophysics Data System (ADS)

Rodriguez-Cardona, B.; Coble, A. A.; Prokishkin, A. S.; Kolosov, R.; Spencer, R. G.; Wymore, A.; McDowell, W. H.

2016-12-01

In stream ecosystems, dissolved organic carbon (DOC) and nitrogen (N) processing are tightly linked. In temperate streams, greater DOC concentrations and higher DOC:NO3- ratios promote the greatest nitrate (NO3-) uptake. However, less is known about this relationship in other biomes including the arctic which is undergoing changes due to climate change contributing to thawing of permafrost and alterations in biogeochemical cycles in soils and streams. Headwater streams draining into the N. Tunguska River in the central Siberian plateau are affected by forest fires but little is known about the aquatic biogeochemical implications in both a thawing and burning landscape. There are clear patterns between carbon concentration and fire history where generally DOC concentration in streams decrease after fires and older burn sites have shown greater DOC concentrations and more bioavailable DOC that could promote greater heterotrophic uptake of NO3-. However, the relationship between nutrient dynamics, organic matter composition, and fire history in streams is not very clear. In order to assess the influence of organic matter composition and DOC concentration on nutrient uptake in arctic streams, we conducted a series of short-term nutrient addition experiments following the tracer addition for spiraling curve characterization (TASCC) method, consisting of NO3- and NH4++PO43- additions, across 4 streams that comprise a fire gradient that spans 3- >100 years since the last burn with DOC concentrations ranging between 12-23 mg C/L. We hypothesized that nutrient uptake would be greatest in older burn sites due to greater DOC concentrations and availability. We will specifically examine how nutrient uptake relates to DOC concentration and OM composition (analyzed via FTICR-MS) across the burn gradient. Across the four sites DOC concentration and DOC:NO3- ratios decreased from old burn sites to recently burned sites. Results presented here can elucidate on the potential impacts of permafrost thawing and forest fires on nutrient dynamics in arctic streams.

Evaluating the impacts of landscape positions and nitrogen fertilizer rates on dissolved organic carbon on switchgrass land seeded on marginally yielding cropland.

PubMed

Lai, Liming; Kumar, Sandeep; Mbonimpa, Eric G; Hong, Chang Oh; Owens, Vance N; Neupane, Ram P

2016-04-15

Dissolved organic carbon (DOC) through leaching into the soils is another mechanism of net C loss. It plays an important role in impacting the environment and impacted by soil and crop management practices. However, little is known about the impacts of landscape positions and nitrogen (N) fertilizer rates on DOC leaching in switchgrass (Panicum virgatum L.). This experimental design included three N fertilizer rates [0 (low); 56 (medium); 112 (high) kg N ha(-1)] and three landscape positions (shoulder, backslope and footslope). Daily average DOC contents at backslope were significantly lower than that at shoulder and footslope. The DOC contents from the plots that received medium N rate were also significantly lower than the plots that received low N rates. The interactions of landscape and N rates on DOC contents were different in every year from 2009 to 2014, however, no significant consistent trend of DOC contents was observed over time. Annual average DOC contents from the plots managed with low N rate were higher than those with high N rate. These contents at the footslope were higher than that at the shoulder position. Data show that there is a moderate positive relationship between the total average DOC contents and the total average switchgrass biomass yields. Overall, the DOC contents from leachate in the switchgrass land were significantly influenced by landscape positions and N rates. The N fertilization reduced DOC leaching contents in switchgrass field. The switchgrass could retain soil and environment sustainability to some extent. These findings will assist in understanding the mechanism of changes in DOC contents with various parameters in the natural environment and crop management systems. However, use of long-term data might help to better assess the effects of above factors on DOC leaching contents and loss in the switchgrass field in the future. Copyright © 2016 Elsevier Ltd. All rights reserved.

The Relationship Between DOC Partition Coefficient and Mineral Soil C:N Ratio

NASA Astrophysics Data System (ADS)

Aitkenhead-Peterson, J. A.; McDowell, W. H.

2001-12-01

Since our recent publication showing that soil C:N predicts DOC flux at local and global scales, an effort has been made to understand mechanisms controlling the relationship between the two variables. We have approached this at multiple scales, using soil batch experiments, soil column experiments, and long-term field manipulations. We present here the results from our batch adsorption experiment. Mineral soils from tropical (wet and moist) and temperate (coniferous and hardwood) forests were used to assess DOC adsorption by the initial mass isotherm approach. We found that the DOC partition co-efficient (m) which represents a soil's tendency to adsorb DOC is strongly and inversely related to mineral soil C:N ratio (R2 = 0.99 n = 10 p < 0.001). The intercept of the mass isotherm, or the desorption term, was positively related to mineral soil C:N ratio (R2 = 0.80 n = 10 p < 0.01), but we found that desorption of DOC was more closely correlated with equilibrium DOC concentration (R2 = 0.97 n = 10 p < 0.001) than with mineral soil C:N. The mass isotherm approach is also useful in calculating the reactive soil pool (RSP), the fraction of the soil pool of organic carbon that may be lost to leaching. The RSP was not significantly related to mineral soil C:N, but tropical soils tended to have a larger RSP than temperate soils. Although some of the tropical soils came from areas where the natural forest had been cleared, used for plantations and then abandoned, the relationship between DOC adsorption and mineral soil C:N was not compromised. Watershed soil C:N ratio is an excellent predictor of DOC export because soil C:N is related to physiochemical adsorption processes in mineral soils and biotic production of DOC in organic soil horizons. It appears that soil C:N is a relatively robust predictor of soil solution DOC concentration and surface water DOC export for ecosystems undergoing environmental stress.

Studying dissolved organic carbon export from the Penobscot Watershed in to Gulf of Maine using Regional Hydro-Ecological Simulation System (RHESSys)

NASA Astrophysics Data System (ADS)

Rouhani, S. F. B. B.; Schaaf, C.; Douglas, E. M.; Choate, J. S.; Yang, Y.; Kim, J.

2014-12-01

The movement of Dissolved Organic Carbon (DOC) from terrestrial system into aquatic system plays an important role for carbon sequestration in ecosystems and affects the formation of soil organic matters.Carbon cycling, storage, and transport to marine systems have become critical issues in global-change science, especially with regard to northern latitudes (Freeman et al., 2001; Benner et al., 2004). DOC, as an important composition of the carbon cycling, leaches from the terrestrial watersheds is a large source of marine DOC. The Penobscot River basin in north-central Maine is the second largest watershed in New England, which drains in to Gulf of Maine. Approximately 89% of the watershed is forested (Griffith and Alerich, 1996).Studying temporal and spatial changes in DOC export can help us to understand terrestrial carbon cycling and to detect any shifts from carbon sink to carbon source or visa versa in northern latitude forested ecosystems.Despite for the importance of understanding carbon cycling in terrestrial and aquatic biogeochemistry, the Doc export, especially the combination of DOC production from bio-system and DOC transportation from the terrestrial in to stream has been lightly discussed in most conceptual or numerical models. The Regional Hydro-Ecological Simulation System (RHESSys), which has been successfully applied in many study sites, is a physical process based terrestrial model that has the ability to simulate both the source and transportation of DOC by combining both hydrological and ecological processes. The focus of this study is on simulating the DOC concentration and flux from the land to the water using RHESSys in the Penobscot watershed. The simulated results will be compared with field measurement of DOC from the watershed to explore the spatial and temporal DOC export pattern. This study will also enhance our knowledge to select sampling locations properly and also improve our understanding on DOC production and transportation in terrestrial forest ecosystem.

Drivers of dissolved organic carbon export in a subarctic catchment: Importance of microbial decomposition, sorption-desorption, peatland and lateral flow.

PubMed

Tang, Jing; Yurova, Alla Y; Schurgers, Guy; Miller, Paul A; Olin, Stefan; Smith, Benjamin; Siewert, Matthias B; Olefeldt, David; Pilesjö, Petter; Poska, Anneli

2018-05-01

Tundra soils account for 50% of global stocks of soil organic carbon (SOC), and it is expected that the amplified climate warming in high latitude could cause loss of this SOC through decomposition. Decomposed SOC could become hydrologically accessible, which increase downstream dissolved organic carbon (DOC) export and subsequent carbon release to the atmosphere, constituting a positive feedback to climate warming. However, DOC export is often neglected in ecosystem models. In this paper, we incorporate processes related to DOC production, mineralization, diffusion, sorption-desorption, and leaching into a customized arctic version of the dynamic ecosystem model LPJ-GUESS in order to mechanistically model catchment DOC export, and to link this flux to other ecosystem processes. The extended LPJ-GUESS is compared to observed DOC export at Stordalen catchment in northern Sweden. Vegetation communities include flood-tolerant graminoids (Eriophorum) and Sphagnum moss, birch forest and dwarf shrub communities. The processes, sorption-desorption and microbial decomposition (DOC production and mineralization) are found to contribute most to the variance in DOC export based on a detailed variance-based Sobol sensitivity analysis (SA) at grid cell-level. Catchment-level SA shows that the highest mean DOC exports come from the Eriophorum peatland (fen). A comparison with observations shows that the model captures the seasonality of DOC fluxes. Two catchment simulations, one without water lateral routing and one without peatland processes, were compared with the catchment simulations with all processes. The comparison showed that the current implementation of catchment lateral flow and peatland processes in LPJ-GUESS are essential to capture catchment-level DOC dynamics and indicate the model is at an appropriate level of complexity to represent the main mechanism of DOC dynamics in soils. The extended model provides a new tool to investigate potential interactions among climate change, vegetation dynamics, soil hydrology and DOC dynamics at both stand-alone to catchment scales. Copyright © 2017 Elsevier B.V. All rights reserved.

Fingerprinting Dissolved Organic Carbon (DOC) Sources with Specific UV Absorbance (SUVA) and Fluorescence

NASA Astrophysics Data System (ADS)

van Verseveld, W. J.; Lajtha, K.; McDonnell, J. J.

2007-12-01

DOC is an important water quality constituent because it is an important food source for stream biota, it plays a significant role in metal toxicity and transport, and protects aquatic organisms by absorbing visible and UV light. However, sources of stream DOC and changes in DOC quality at storm and seasonal scales remain poorly understood. We characterized DOC concentrations and SUVA (as an indicator of aromaticity) at the plot, hillslope and catchment scale during and between five storm events over the period Fall 2004 until Spring 2005, in WS10, H.J. Andrews, Oregon, USA. This study site has hillslopes that issue directly into the stream. This enabled us to compare a trenched hillslope response to the stream response without the influence of a riparian zone. The main result of this study was that SUVA in addition to DOC was needed to fingerprint sources of DOC. Stream water and lateral subsurface flow showed a clockwise DOC and SUVA hysteresis pattern. Both organic horizon water and transient groundwater were characterized by high DOC concentrations and SUVA values, while DOC concentrations and SUVA values in soil water decreased with depth in the soil profile. This indicates transient groundwater was an important contributor to high DOC concentrations and SUVA values during storm events. During the falling limb of the hydrograph deep soil water and seepage groundwater based on SUVA values contributed significantly to lateral subsurface flow and stream water. Preliminary results showed that fluorescence of stream water and lateral subsurface flow continuously measured with a fluorometer was significantly related to UV-absorbance during a December storm event. Finally, SUVA of lateral subsurface flow was lower than SUVA of stream water at the seasonal scale, indicating a difference in mixing of water sources at the hillslope and catchment scale. Overall, our results show that SUVA and fluorescence are useful tracers for fingerprinting DOC sources.

Comparing Stream Discharge, Dissolved Organic Carbon, and Selected MODIS Indices in Freshwater Basins

NASA Astrophysics Data System (ADS)

Shaver, W. T.; Wollheim, W. M.

2009-12-01

In a preliminary study of the Ipswich Basin in Massachusetts, a good correlation was found to exist between the MODIS (Moderate Resolution Imaging Spectroradiometer) Enhanced Vegetation Index and stream dissolved organic carbon (DOC). Further study was warranted to determine the utility of MODIS indices in predicting temporal stream DOC. Stream discharge rates and DOC data were obtained from the USGS National Water Quality Assessment Program (NAWQA) database. Twelve NAWQA monitoring sites were selected for evaluation based on the criteria of having drainage basin sizes less than 600 km2 with relatively continuous, long-term DOC and discharge data. MODIS indices were selected based on their connections with terrestrial DOC and were obtained for each site's catchment area. These included the Normalized Vegetation Index (NDVI), the Enhanced Vegetation Index (EVI), the Daily Photosynthesis (PSN) and the Leaf Area Index (LAI). Regression analysis was used to evaluate the relationships between DOC, discharge and MODIS products. Data analysis revealed several important trends. Sites with strong positive correlation coefficients (r values ranging from 0.462 to 0.831) between DOC and discharge displayed weak correlations with all of the MODIS indices (r values ranging from 0 to 0.322). For sites where the DOC/discharge correlation was weak or negative, MODIS indices were moderately correlated, with r values ranging from 0.35 to 0.647, all of which were significant at less than 1 percent. Some sites that had weak positive correlations with MODIS indices displayed a lag time, that is, the MODIS index rose and fell shortly before the DOC concentration rose and fell. Shifting the MODIS data forward in time by roughly one month significantly increased the DOC/MODIS r values by about 10%. NDVI and EVI displayed the strongest correlations with temporal DOC variability (r values ranging from 0.471 to 0.647), and therefore these indices are the most promising for being incorporated into a model for remotely sensing terrestrial DOC.

An Analysis of Terrestrial and Aquatic Environmental Controls of Riverine Dissolved Organic Carbon in the Conterminous United States

DOE PAGES

Yang, Qichun; Zhang, Xuesong; Xu, Xingya; ...

2017-05-29

Riverine carbon cycling is an important, but insufficiently investigated component of the global carbon cycle. Analyses of environmental controls on riverine carbon cycling are critical for improved understanding of mechanisms regulating carbon processing and storage along the terrestrial-aquatic continuum. Here, we compile and analyze riverine dissolved organic carbon (DOC) concentration data from 1402 United States Geological Survey (USGS) gauge stations to examine the spatial variability and environmental controls of DOC concentrations in the United States (U.S.) surface waters. DOC concentrations exhibit high spatial variability, with an average of 6.42 ± 6.47 mg C/ L (Mean ± Standard Deviation). In general,more » high DOC concentrations occur in the Upper Mississippi River basin and the Southeastern U.S., while low concentrations are mainly distributed in the Western U.S. Single-factor analysis indicates that slope of drainage areas, wetlands, forests, percentage of first-order streams, and instream nutrients (such as nitrogen and phosphorus) pronouncedly influence DOC concentrations, but the explanatory power of each bivariate model is lower than 35%. Analyses based on the general multi-linear regression models suggest DOC concentrations are jointly impacted by multiple factors. Soil properties mainly show positive correlations with DOC concentrations; forest and shrub lands have positive correlations with DOC concentrations, but urban area and croplands demonstrate negative impacts; total instream phosphorus and dam density correlate positively with DOC concentrations. Notably, the relative importance of these environmental controls varies substantially across major U.S. water resource regions. In addition, DOC concentrations and environmental controls also show significant variability from small streams to large rivers, which may be caused by changing carbon sources and removal rates by river orders. In sum, our results reveal that general multi-linear regression analysis of twenty one terrestrial and aquatic environmental factors can partially explain (56%) the DOC concentration variation. In conclusion, this study highlights the complexity of the interactions among these environmental factors in determining DOC concentrations, thus calls for processes-based, non-linear methodologies to constrain uncertainties in riverine DOC cycling.« less

Dilute Oxygen Combustion Phase IV Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Riley, M.F.

2003-04-30

Novel furnace designs based on Dilute Oxygen Combustion (DOC) technology were developed under subcontract by Techint Technologies, Coraopolis, PA, to fully exploit the energy and environmental capabilities of DOC technology and to provide a competitive offering for new furnace construction opportunities. Capital cost, fuel, oxygen and utility costs, NOx emissions, oxide scaling performance, and maintenance requirements were compared for five DOC-based designs and three conventional air5-fired designs using a 10-year net present value calculation. A furnace direct completely with DOC burners offers low capital cost, low fuel rate, and minimal NOx emissions. However, these benefits do not offset the costmore » of oxygen and a full DOC-fired furnace is projected to cost $1.30 per ton more to operate than a conventional air-fired furnace. The incremental cost of the improved NOx performance is roughly $6/lb NOx, compared with an estimated $3/lb. NOx for equ8pping a conventional furnace with selective catalytic reduction (SCCR) technology. A furnace fired with DOC burners in the heating zone and ambient temperature (cold) air-fired burners in the soak zone offers low capital cost with less oxygen consumption. However, the improvement in fuel rate is not as great as the full DOC-fired design, and the DOC-cold soak design is also projected to cost $1.30 per ton more to operate than a conventional air-fired furnace. The NOx improvement with the DOC-cold soak design is also not as great as the full DOC fired design, and the incremental cost of the improved NOx performance is nearly $9/lb NOx. These results indicate that a DOC-based furnace design will not be generally competitive with conventional technology for new furnace construction under current market conditions. Fuel prices of $7/MMBtu or oxygen prices of $23/ton are needed to make the DOC furnace economics favorable. Niche applications may exist, particularly where access to capital is limited or floor space limitations are critical. DOC technology will continue to have a highly competitive role in retrofit applications requiring increases in furnace productivity.« less

Concentration, UV-spectroscopic characteristics and fractionation of DOC in stormflow from an urban stream, Southern California, USA

USGS Publications Warehouse

Izbicki, J.A.; Pimentel, I.M.; Johnson, Russell; Aiken, G.R.; Leenheer, J.

2007-01-01

The composition of dissolved organic carbon (DOC) in stormflow from urban areas has been greatly altered, both directly and indirectly, by human activities and there is concern that there may be public health issues associated with DOC, which has unknown composition from different sources within urban watersheds. This study evaluated changes in the concentration and composition of DOC in stormflow in the Santa Ana River and its tributaries between 1995 and 2004 using a simplified approach based on the differences in the optical properties of DOC and using operationally defined differences in molecular weight and solubility. The data show changes in the composition of DOC in stormflow during the rainy season and differences associated with runoff from different parts of the basin, including extensive upland areas burned prior to the 2004 rainy season.Samples were collected from the Santa Ana River, which drains ~6950 km2 of the densely populated coastal area of southern California, during 23 stormflows between 1995 and 2004. Dissolved organic carbon (DOC) concentrations during the first stormflows of the ‘winter’ (November to March) rainy season increased rapidly with streamflow and were positively correlated with increased faecal indicator bacteria concentrations. DOC concentrations were not correlated with streamflow or with other constituents during stormflows later in the rainy season and DOC had increasing UV absorbance per unit carbon as the rainy season progressed. DOC concentrations in stormflow from an urban drain tributary to the river also increased during stormflow and were greater than concentrations in the river. DOC concentrations in stormflow from a tributary stream, draining urban and agricultural land that contained more than 320 000 animals, mostly dairy cows, were higher than concentrations in stormflow from the river and from the urban drain. Fires that burned large areas of the basin before the 2004 rainy season did not increase DOC concentrations in the river during stormflow after the fires – possibly because the large watershed of the river damped the effect of the fires. However, the fires increased the hydrophobic neutral organic carbon fraction of DOC in stormflow from the urban drain and the tributary stream.

Non-linear, connectivity and threshold-dominated runoff-generation controls DOC and heavy metal export in a small peat catchment

NASA Astrophysics Data System (ADS)

Birkel, Christian; Broder, Tanja; Biester, Harald

2017-04-01

Peat soils act as important carbon sinks, but they also release large amounts of dissolved organic carbon (DOC) to the aquatic system. The DOC export is strongly tied to the export of soluble heavy metals. The accumulation of potentially toxic substances due to anthropogenic activities, and their natural export from peat soils to the aquatic system is an important health and environmental issue. However, limited knowledge exists as to how much of these substances are mobilized, how they are mobilized in terms of flow pathways and under which hydrometeorological conditions. In this study, we report from a combined experimental and modelling effort to provide greater process understanding from a small, lead (Pb) and arsenic (As) contaminated upland peat catchment in northwestern Germany. We developed a minimally parameterized, but process-based, coupled hydrology-biogeochemistry model applied to simulate detailed hydrometric and biogeochemical data. The model was based on an initial data mining analysis, in combination with regression relationships of discharge, DOC and element export. We assessed the internal model DOC-processing based on stream-DOC hysteresis patterns and 3-hourly time step groundwater level and soil DOC data (not used for calibration as an independent model test) for two consecutive summer periods in 2013 and 2014. We found that Pb and As mobilization can be efficiently predicted from DOC transport alone, but Pb showed a significant non-linear relationship with DOC, while As was linearly related to DOC. The relatively parsimonious model (nine calibrated parameters in total) showed the importance of non-linear and rapid near-surface runoff-generation mechanisms that caused around 60% of simulated DOC load. The total load was high even though these pathways were only activated during storm events on average 30% of the monitoring time - as also shown by the experimental data. Overall, the drier period 2013 resulted in increased nonlinearity, but exported less DOC (115 kg C ha-1 yr-1 ± 11 kg C ha-1 yr-1) compared to the equivalent but wetter period in 2014 (189 kg C ha-1 yr-1 ± 38 kg C ha-1 yr-1). The exceedance of a critical water table threshold (-10 cm) triggered a rapid near-surface runoff response with associated higher DOC transport connecting all available DOC pools, and with subsequent dilution. We conclude that the combination of detailed experimental work with relatively simple, coupled hydrology-biogeochemistry models allowed not only the model to be internally constrained, but also provided important insight into how DOC and tightly coupled heavy metals are mobilized.

Temperature sensitivity of DOC production and transformation in organic soils of the Yukon River Basin, Alaska

NASA Astrophysics Data System (ADS)

O'Donnell, J.; Butler, K. D.; Aiken, G.

2012-12-01

The flux of dissolved organic carbon (DOC) from terrestrial to aquatic ecosystems represents a critical component of the high-latitude carbon balance. In the Yukon River basin (YRB), DOC fluxes have declined in recent decades, likely in response to regional permafrost thaw and increased groundwater discharge to river flow. Despite improved flux estimates for many arctic rivers, considerable uncertainty exists regarding the potential response of DOC fluxes to projected warming. To improve estimates of future DOC dynamics, it is important to develop a process-based approach whereby empirical constraints are placed on source and sink terms in both soil and river systems. Here, we examine variability in DOC production and microbially mediated transformations as a function of both temperature and organic matter (OM) composition in soils of the YRB. We conducted "tea" experiments by incubating three organic-soil types that vary with depth and decomposition extent (live/dead moss, fibric OM and humic OM) at two temperatures (4 vs. 20 °C). Leachate samples were collected periodically over a 30-day incubation and characterized for DOC concentration, optical properties (specific UV absorbance at 254 nm or SUVA254, fluorescence), and major chemical fractions using XAD8/XAD4 resins. We observed a non-linear increase in DOC production over time, characterized by a rapid initial release of DOC from soils followed by a slower rise in DOC concentration in subsequent weeks. Mean DOC concentration was described by a significant interaction between organic-soil type and temperature, indicating a strong relationship between temperature sensitivity of net DOC production and the decomposition extent of soil OM. On average across all sampling dates, DOC concentrations were highest in leachate from fibric OM (13.4 to 17.8 mgC L-1), and lowest in leachate from humic OM (3.5 to 8.5 mgC L-1). However, the temperature sensitivity of net DOC production was highest in the humic OM treatment, with mean DOC concentrations increasing by 145% between the 4 and 20°C temperature treatments, whereas DOC concentrations in leachate from fibric OM only increased by 33%. We also observed compositional differences in dissolved organic matter (DOM) across experimental treatments and over time, as reflected by UV absorbance and fluorescence measurements. For instance, mean SUVA254 values increased from near-surface soil (live/dead moss = 2.28 ± 0.27 L mgC m-1) to deeper organic horizons (humic OM = 3.86 ± 0.60 L mgC m-1). SUVA254 also increased over time, suggesting selective mineralization of low-molecular weight compounds and enrichment of the aromatic DOM pool. Together, these data help to distinguish vertical differences in DOM origin and composition through soil profiles, and can be used to track the fate of terrestrial DOC under future warming at high latitudes.

Influence of adsorption versus coprecipitation on the retention of rice straw-derived dissolved organic carbon and subsequent reducibility of Fe-DOC systems

NASA Astrophysics Data System (ADS)

Sodano, Marcella; Lerda, Cristina; Martin, Maria; Celi, Luisella; Said-Pullicino, Daniel

2016-04-01

The dissimilatory reduction of Fe oxides is the main organic C-consuming process in paddy soils under anoxic conditions. The contribution of Fe(III) reduction to anaerobic C mineralization depends on many factors, but most importantly on the bioavailability of labile organic matter and a reducible Fe pool as electron donors and acceptors, respectively. On the other hand, the strong affinity of these minerals for organic matter and their capability of protecting it against microbial decomposition is well known. Natural Fe oxides in these soils may therefore play a key role in determining the C source/sink functions of these agro-ecosystems. Apart from contributing to C stabilization, the interaction between Fe oxides and dissolved organic C (DOC) may influence the structure and reactivity of these natural oxides, and selectively influence the chemical properties of DOC. Indeed, Fe-DOC associations may not only reduce the availability of DOC, but may also limit the microbial reduction of Fe oxides under anoxic conditions. In fact, the accessibility of these minerals to microorganisms, extracellular enzymes, redox active shuttling compound or reducing agents may be impeded by the presence of sorbed organic matter. In soils that are regularly subjected to fluctuations in redox conditions the interaction between DOC and Fe oxides may not only involve organic coatings on mineral surfaces, but also Fe-DOC coprecipitates that form during the rapid oxidation of soil solutions containing important amounts of DOC and Fe(II). However, little is known on how these processes influence DOC retention, and the structure and subsequent reducibility of these Fe-DOC associations. We hypothesized that the nature and extent of the interaction between DOC and Fe oxides may influence the accessibility of the bioavailable Fe pool and consequently its reducibility. We tested this hypothesis by synthesizing a series of Fe-DOC systems with increasing C:Fe ratios prepared by either surface adsorption or coprecipitation, DOC was obtained by incubating a suspension of rice straw in water (straw-solution ratio of 1:30) under oxic conditions at 25° C for 30 days to simulate the decomposition of rice straw in the field. Increasing amounts of DOC were equilibrated (pH = 6) with a known mass of ferrihydrite (initial molar C:Fe ratios of 1, 5 and 10) to obtain surface coated Fe-DOC systems with increasing C loading. On the other hand, coprecipitates with similar initial C:Fe ratios were obtained by oxidation of a Fe(II) solution in the presence of increasing amounts of DOC at pH = 6. A natural Fe-DOC coprecipitate was also obtained by in situ sampling of a paddy soil solution from the topsoil during a cropping season, and subsequent oxidation in the laboratory. The surface and chemical properties of all substrates were subsequently evaluated and compared. We hereby present the first results of the influence of adsorption vs coprecipitation on the selective retention of DOC, structure and surface charge, as well as their susceptibility to chemical reduction with ascorbic acid.

Data Report: Results of the July 2011 Sampling in the Former Brunswick-Altamaha Canal, South of the LCP Chemicals Site, Brunswick, Georgia

EPA Pesticide Factsheets

October 11, 2011 report, prepared for LCP site steering Committee by EPS, presents results of sediment and fish tissue samples. Region ID: 04 DocID: 10839615, DocDate: 10-11-2011. Region ID: 04 DocID: 10839615, DocDate: 10-11-2011

Effect of dissolved organic carbon on the transport and attachment behaviors of Cryptosporidium parvum oocysts and carboxylate-modified microspheres advected through temperate humic and tropical volcanic agricultural soil

USGS Publications Warehouse

Mohanram, Arvind; Ray, Chittaranjan; Metge, David W.; Barber, Larry B.; Ryan, Joseph N.; Harvey, Ronald W.

2012-01-01

Transport of Cryptosporidium parvum oocysts and microspheres in two disparate (a clay- and Fe-rich, volcanic and a temperate, humic) agricultural soils were studied in the presence and absence of 100 mg L–1 of sodium dodecyl benzene sulfonate (SDBS), and Suwannee River Humic Acid (SRHA) at pH 5.0–6.0. Transport of carboxylate-modified, 1.8 μm microspheres in soil columns was highly sensitive to the nature of the dissolved organic carbon (DOC), whereas oocysts transport was more affected by soil mineralogy. SDBS increased transport of microspheres from 48% to 87% through the tropical soil and from 43% to 93% in temperate soil. In contrast, SRHA reduced transport of microspheres from 48% to 28% in tropical soil and from 43% to 16% in temperate soil. SDBS also increased oocysts transport through the temperate soil 5-fold, whereas no oocyst transport was detected in tropical soil. SRHA had only a nominal effect in increasing oocysts transport in tropical soil, but caused a 6-fold increase in transport through the temperate soil. Amendments of only 4 mg L–1 SRHA and SDBS decreased oocyst hydrophobicity from 66% to 20% and from 66% to 5%, respectively. However, SDBS increased microsphere hydrophobicity from 16% to 33%. Soil fines, which includes clays, and SRHA, both caused the oocysts zeta potential (ζ) to become more negative, but caused the highly hydrophilic microspheres to become less negatively charged. The disparate behaviors of the two colloids in the presence of an ionic surfactant and natural organic matter suggest that microspheres may not be suitable surrogates for oocysts in certain types of soils. These results indicate that whether or not DOC inhibits or promotes transport of oocysts and microspheres in agricultural soils and by how much, depends not only on the surface characteristics of the colloid, but the nature of the DOC and the soil mineralogy.

Sequential hydrophile and lipophile solubilization as an efficient method for decellularization of porcine aortic valve leaflets: Structure, mechanical property and biocompatibility study.

PubMed

Qiao, Wei-Hua; Liu, Peng; Hu, Dan; Al Shirbini, Mahmoud; Zhou, Xian-Ming; Dong, Nian-Guo

2018-02-01

Antigenicity of xenogeneic tissues is the major obstacle to increased use of these materials in clinical medicine. Residual xenoantigens in decellularized tissue elicit the immune response after implantation, causing graft failure. With this in mind, the potential use is proposed of three protein solubilization-based protocols for porcine aortic valve leaflets decellularization. It was demonstrated that hydrophile solubilization alone achieved incomplete decellularization; lipophile solubilization alone (LSA) completely removed all cells and two most critical xenoantigens - galactose-α(1,3)-galactose (α-Gal) and major histocompatibility complex I (MHC I) - but caused severe alterations of the structure and mechanical properties; sequential hydrophile and lipophile solubilization (SHLS) resulted in a complete removal of cells, α-Gal and MHC I, and good preservation of the structure and mechanical properties. In contrast, a previously reported method using Triton X-100, sodium deoxycholate and IGEPAL CA-630 resulted in a complete removal of all cells and MHC I, but with remaining α-Gal epitope. LSA- and SHLS-treated leaflets showed significantly reduced leucocyte activation (polymorphonuclear elastase) upon interaction with human blood in vitro. When implanted subdermally in rats for 6 weeks, LSA- or SHLS-treated leaflets were presented with more biocompatible implants and all four decellularized leaflets were highly resistant to calcification. These findings illustrate that the SHLS protocol could be considered as a promising decellularization method for the decellularization of xenogeneic tissues in tissue engineering and regenerative medicine. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

Curcumin-loaded mixed micelles: preparation, optimization, physicochemical properties and cytotoxicity in vitro.

PubMed

Duan, Yuwei; Wang, Juan; Yang, Xiaoye; Du, Hongliang; Xi, Yanwei; Zhai, Guangxi

2015-01-01

Although curcumin (CUR) can inhibit proliferation and induce apoptosis of tumors, the poor water solubility restricted its clinical application. The aim of this study was to improve the aqueous solubility of CUR and make more favorable changes to bioactivity by preparing curcumin-loaded phospholipid-sodium deoxycholate-mixed micelles (CUR-PC-SDC-MMs). CUR-PC-SDC-MMs were prepared by the thin-film dispersion method. Based on the results of single factor exploration, the preparation technology was optimized using the central composite design-response surface methodology with drug loading and entrapment efficiency (EE%) as indicators. The images of transmission electron microscopy showed that the optimized CUR-PC-SDC-MMs were spherical and well dispersed. The average size of the mixed micelles was 66.5 nm, the zeta potential was about -26.96 mV and critical micelle concentration was 0.0087 g/l. CUR was encapsulated in PC-SDC-MMs with loading capacity of 13.12%, EE% of 87.58%, and the solubility of CUR in water was 3.14 mg/ml. The release results in vitro showed that the mixed micelles presented sustained release behavior compared to the propylene glycol solution of CUR. The IC50 values of CUR-loaded micelles and free drug in human breast carcinoma cell lines were 4.10 μg/ml and 6.93 µg/ml, respectively. It could be concluded from the above results that the CUR-PC-SDC-MMs system might serve as a promising nanocarrier to improve the solubility and bioactivity of CUR.

Engineering Oral and Parenteral Amorphous Amphotericin B Formulations against Experimental Trypanosoma cruzi Infections.

PubMed

Rolón, Miriam; Serrano, Dolores R; Lalatsa, Aikaterini; de Pablo, Esther; Torrado, Juan Jose; Ballesteros, Maria Paloma; Healy, Anne Marie; Vega, Celeste; Coronel, Cathia; Bolás-Fernández, Francisco; Dea-Ayuela, Maria Auxiliadora

2017-04-03

Chagas disease (CD) is a parasitic zoonosis endemic in most mainland countries of Central and South America affecting nearly 10 million people, with 100 million people at high risk of contracting the disease. Treatment is only effective if received at the early stages of the disease. Only two drugs (benznidazole and nifurtimox) have so far been marketed, and both share various limitations such as variable efficacy, many side effects, and long duration of treatment, thus reducing compliance. The in vitro and in vivo efficacy of poly-aggregated amphotericin B (AmB), encapsulated poly-aggregated AmB in albumin microspheres (AmB-AME), and dimeric AmB-sodium deoxycholate micelles (AmB-NaDC) was evaluated. Dimeric AmB-NaDC exhibited a promising selectivity index (SI = 3164) against amastigotes, which was much higher than those obtained for licensed drugs (benznidazole and nifurtimox). AmB-AME, but not AmB-NaDC, significantly reduced the parasitemia levels (3.6-fold) in comparison to the control group after parenteral administration at day 7 postinfection. However, the oral administration of AmB-NaDC (10-15 mg/kg/day for 10 days) resulted in a 75% reduction of parasitemia levels and prolonged the survival rate in 100% of the tested animals. Thus, the results presented here illustrate for the first time the oral efficacy of AmB in the treatment of trypanosomiasis. AmB-NaDC is an easily scalable, affordable formulation prepared from GRAS excipients, enabling treatment access worldwide, and therefore it can be regarded as a promising therapy for trypanosomiasis.

Rational design of polyarginine nanocapsules intended to help peptides overcoming intestinal barriers.

PubMed

Niu, Zhigao; Tedesco, Erik; Benetti, Federico; Mabondzo, Aloïse; Montagner, Isabella Monia; Marigo, Ilaria; Gonzalez-Touceda, David; Tovar, Sulay; Diéguez, Carlos; Santander-Ortega, Manuel J; Alonso, María J

2017-10-10

The aim of this work was to rationally design and characterize nanocapsules (NCs) composed of an oily core and a polyarginine (PARG) shell, intended for oral peptide delivery. The cationic polyaminoacid, PARG, and the oily core components were selected based on their penetration enhancing properties. Insulin was adopted as a model peptide to assess the performance of the NCs. After screening numerous formulation variables, including different oils and surfactants, we defined a composition consisting of oleic acid, sodium deoxycholate (SDC) and Span 80. This selected NCs composition, produced by the solvent displacement technique, exhibited the following key features: (i) an average size of 180nm and a low polydispersity (0.1), (ii) a high insulin association efficacy (80-90% AE), (iii) a good colloidal stability upon incubation in simulated intestinal fluids (SIF, FaSSIF-V2, FeSSIF-V2), and (iv) the capacity to control the release of the associated insulin for >4h. Furthermore, using the Caco-2 model cell line, PARG nanocapsules were able to interact with the enterocytes, and reversibly modify the TEER of the monolayer. Both cell adhesion and membrane permeabilization could account for the pronounced transport of the NCs-associated insulin (3.54%). This improved interaction was also visualized by confocal fluorescent microscopy following oral administration of PARG nanocapsulesto mice. Finally, in vivo efficacy studies performed in normoglycemic rats showed a significant decrease in their plasma glucose levels after treatment. In conclusion, here we disclose key formulation elements for making possible the oral administration of peptides. Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

Creation of an acellular vaginal matrix for potential vaginal augmentation and cloacal repair.

PubMed

Greco, K V; Jones, L G; Obiri-Yeboa, I; Ansari, T

2018-05-21

our aim was to use porcine vagina to create a vaginal matrix and test its cellular biocompatibility. vagina was harvested from pigs and de-cellularised (DC) using a combination of detergents (Triton x-100 and sodium deoxycholate) and enzymes (DNAse/RNAse). the presence of cellular material, collagen structural integrity and basement membrane proteins were assessed histologically. To address cytocompatibility, porcine adipose derived-mesenchymal stem cells (AD-MSC) were harvested from abdominal fat together with vaginal epithelial cells (VEC) and seeded onto the mucosal aspect of the vaginal scaffold. Both cells populations were seeded individually and assessed histologically at days 3 and 10. MAIN OUTCOMES/RESULTS: the combination of enzymes and detergents resulted in a totally acellular matrix with very low DNA amount (control= 97.5ng/μl ± 10.8 vs DC= 40.1 ng/μl ±0.33 p=0.02). The extra cellular matrix (ECM) showed retention of collagen fibres and elastin and a 50% retention in glycosaminoglycan content; (control= 1.18μg/mg ± 0.28 DC = 1.35μg/mg ± 0.1 p=0.03) and an intact basement membrane (positive for both laminin and collagen IV). Seeded scaffolds showed cell attachment with both AD-MSC and VEC at days 3 and 10. it is possible to generate an acellular porcine vaginal matrix capable of supporting cells to reconstruct the vagina for future pre-clinical testing, and holds promise for creating clinically relevant sized tissue for human application. Copyright © 2018. Published by Elsevier Inc.

Efficacy and toxicological studies of cremophor EL free alternative paclitaxel formulation.

PubMed

Utreja, Puneet; Jain, Subheet; Yadav, Subodh; Khandhuja, K L; Tiwary, A K

2011-11-01

In the present study, Cremophor EL free paclitaxel elastic liposomal formulation consisting of soya phosphatidylcholine and biosurfactant sodium deoxycholate was developed and optimized. The toxicological profile, antitumor efficacy and hemolytic toxicity of paclitaxel elastic liposomal formulation in comparison to Cremophor EL based marketed formulation were evaluated. Paclitaxel elastic liposomal formulations were prepared and characterized in vitro, ex-vivo and in vivo. Single dose toxicity study of paclitaxel elastic liposomal and marketed formulation was carried out in dose range of 10, 20, 40, 80, 120, 160 and 200 mg/kg. Cytotoxicity of developed formulation was evaluated using small cell lung cancer cell line (A549). Antitumor activity of developed formulation was compared with the marketed formulation using Cytoselect™ 96-well cell transformation assay. In vivo administration of paclitaxel elastic liposomal formulation into mice showed 6 fold increase in Maximum Tolerated Dose (MTD) in comparison to the marketed formulation. Similarly, LD50 (141.6 mg/kg) was also found to increase significantly than the marketed formulation (16.7 mg/kg). Result of antitumor assay revealed a high reduction of tumor density with paclitaxel elastic liposomal formulation. Reduction in hemolytic toxicity was also observed with paclitaxel elastic liposomal formulation in comparison to the marketed formulation. The carrier based approach for paclitaxel delivery demonstrated significant reduction in toxicity as compared to the Cremophor EL based marketed formulation following intra-peritoneal administration in mice model. The reduced toxicity and enhanced anti-cancer activity of elastic liposomal formulation strongly indicate its potential for safe and effective delivery of paclitaxel.

Long-term cryopreservation of decellularised oesophagi for tissue engineering clinical application.

PubMed

Urbani, Luca; Maghsoudlou, Panagiotis; Milan, Anna; Menikou, Maria; Hagen, Charlotte Klara; Totonelli, Giorgia; Camilli, Carlotta; Eaton, Simon; Burns, Alan; Olivo, Alessandro; De Coppi, Paolo

2017-01-01

Oesophageal tissue engineering is a therapeutic alternative when oesophageal replacement is required. Decellularised scaffolds are ideal as they are derived from tissue-specific extracellular matrix and are non-immunogenic. However, appropriate preservation may significantly affect scaffold behaviour. Here we aim to prove that an effective method for short- and long-term preservation can be applied to tissue engineered products allowing their translation to clinical application. Rabbit oesophagi were decellularised using the detergent-enzymatic treatment (DET), a combination of deionised water, sodium deoxycholate and DNase-I. Samples were stored in phosphate-buffered saline solution at 4°C (4°C) or slow cooled in medium with 10% Me2SO at -1°C/min followed by storage in liquid nitrogen (SCM). Structural and functional analyses were performed prior to and after 2 and 4 weeks and 3 and 6 months of storage under each condition. Efficient decellularisation was achieved after 2 cycles of DET as determined with histology and DNA quantification, with preservation of the ECM. Only the SCM method, commonly used for cell storage, maintained the architecture and biomechanical properties of the scaffold up to 6 months. On the contrary, 4°C method was effective for short-term storage but led to a progressive distortion and degradation of the tissue architecture at the following time points. Efficient storage allows a timely use of decellularised oesophagi, essential for clinical translation. Here we describe that slow cooling with cryoprotectant solution in liquid nitrogen vapour leads to reliable long-term storage of decellularised oesophageal scaffolds for tissue engineering purposes.

Roles of the outer membrane protein AsmA of Salmonella enterica in the control of marRAB expression and invasion of epithelial cells.

PubMed

Prieto, Ana I; Hernández, Sara B; Cota, Ignacio; Pucciarelli, M Graciela; Orlov, Yuri; Ramos-Morales, Francisco; García-del Portillo, Francisco; Casadesús, Josep

2009-06-01

A genetic screen for suppressors of bile sensitivity in DNA adenine methylase (dam) mutants of Salmonella enterica serovar Typhimurium yielded insertions in an uncharacterized locus homologous to the Escherichia coli asmA gene. Disruption of asmA suppressed bile sensitivity also in phoP and wec mutants of S. enterica and increased the MIC of sodium deoxycholate for the parental strain ATCC 14028. Increased levels of marA mRNA were found in asmA, asmA dam, asmA phoP, and asmA wec strains of S. enterica, suggesting that lack of AsmA activates expression of the marRAB operon. Hence, asmA mutations may enhance bile resistance by inducing gene expression changes in the marRAB-controlled Mar regulon. In silico analysis of AsmA structure predicted the existence of one transmembrane domain. Biochemical analysis of subcellular fractions revealed that the asmA gene of S. enterica encodes a protein of approximately 70 kDa located in the outer membrane. Because AsmA is unrelated to known transport and/or efflux systems, we propose that activation of marRAB in asmA mutants may be a consequence of envelope reorganization. Competitive infection of BALB/c mice with asmA(+) and asmA isogenic strains indicated that lack of AsmA attenuates Salmonella virulence by the oral route but not by the intraperitoneal route. Furthermore, asmA mutants showed a reduced ability to invade epithelial cells in vitro.

Dry Gel Containing Optimized Felodipine-Loaded Transferosomes: a Promising Transdermal Delivery System to Enhance Drug Bioavailability.

PubMed

Kassem, Mohammed Ali; Aboul-Einien, Mona Hassan; El Taweel, Mai Magdy

2018-04-30

Felodipine has a very low bioavailability due to first-pass metabolism. The aim of this study was to enhance its bioavailability by transdermal application. Felodipine-loaded transferosomes were prepared by thin-film hydration using different formulation variables. An optimized formula was designed using statistical experimental design. The independent variables were the used edge activator, its molar ratio to phosphatidylcholine, and presence or absence of cholesterol. The responses were entrapment efficiency of transferosomes, their size, polydispersity index, zeta potential, and percent drug released after 8 h. The optimized formula was subjected to differential scanning calorimetry studies and its stability on storage at 4°C for 6 months was estimated. This formula was improved by incorporation of different permeation enhancers where ex vivo drug flux through mice skin was estimated and the best improved formula was formulated in a gel and lyophilized. The prepared gel was subjected to in vivo study using Plendil® tablets as a reference. According to the calculated desirability, the optimized transferosome formula was that containing sodium deoxycholate as edge activator at 5:1 M ratio to phosphatidylcholine and no cholesterol. The thermograms of this formula indicated the incorporation of felodipine inside the prepared vesicles. None of the tested parameters differed significantly on storage. The lyophilized gel of labrasol-containing formula was chosen for in vivo study. The relative bioavailability of felodipine from the designed gel was 1.7. In conclusion, topically applied lyophilized gel containing felodipine-loaded transferosomes is a promising transdermal delivery system to enhance its bioavailability.

The influence of bile salts on the distribution of simvastatin in the octanol/buffer system.

PubMed

Đanić, Maja; Pavlović, Nebojša; Stanimirov, Bojan; Vukmirović, Saša; Nikolić, Katarina; Agbaba, Danica; Mikov, Momir

2016-01-01

Distribution coefficient (D) is useful parameter for evaluating drugs permeability properties across biological membranes, which are of importance for drugs bioavailability. Given that bile acids are intensively studied as drug permeation-modifying and -solubilizing agents, the aim of this study was to estimate the influence of sodium salts of cholic (CA), deoxycholic (DCA) and 12-monoketocholic acids (MKC) on distribution coefficient of simvastatin (SV) (lactone [SVL] and acid form [SVA]) which is a highly lipophilic compound with extremely low water solubility and bioavailability. LogD values of SVA and SVL with or without bile salts were measured by liquid-liquid extraction in n-octanol/buffer systems at pH 5 and 7.4. SV concentrations in aqueous phase were determined by HPLC-DAD. Chem3D Ultra program was applied for computation of physico-chemical properties of analyzed compounds and their complexes. Statistically significant decrease in both SVA and SVL logD was observed for all three studied bile salts at both selected pH. MKC exerted the most pronounced effect in the case of SVA while there were no statistically significant differences between observed bile salts for SVL. The calculated physico-chemical properties of analyzed compounds and their complexes supported experimental results. Our data indicate that the addition of bile salts into the n-octanol/buffer system decreases the values of SV distribution coefficient at both studied pH values. This may be the result of the formation of hydrophilic complexes increasing the solubility of SV that could consequently impact the pharmacokinetic parameters of SV and the final drug response in patients.

Superacid-Surfactant Exchange: Enabling Nondestructive Dispersion of Full-Length Carbon Nanotubes in Water.

PubMed

Wang, Peng; Kim, Mijin; Peng, Zhiwei; Sun, Chuan-Fu; Mok, Jasper; Lieberman, Anna; Wang, YuHuang

2017-09-26

Attaining aqueous solutions of individual, long single-walled carbon nanotubes is a critical first step for harnessing the extraordinary properties of these materials. However, the widely used ultrasonication-ultracentrifugation approach and its variants inadvertently cut the nanotubes into short pieces. The process is also time-consuming and difficult to scale. Here we present an unexpectedly simple solution to this decade-old challenge by directly neutralizing a nanotube-chlorosulfonic acid solution in the presence of sodium deoxycholate. This straightforward superacid-surfactant exchange eliminates the need for both ultrasonication and ultracentrifugation altogether, allowing aqueous solutions of individual nanotubes to be prepared within minutes and preserving the full length of the nanotubes. We found that the average length of the processed nanotubes is more than 350% longer than sonicated controls, with a significant fraction approaching ∼9 μm, a length that is limited by only the raw material. The nondestructive nature is manifested by an extremely low density of defects, bright and homogeneous photoluminescence in the near-infrared, and ultrahigh electrical conductivity in transparent thin films (130 Ω/sq at 83% transmittance), which well exceeds that of indium tin oxide. Furthermore, we demonstrate that our method is fully compatible with established techniques for sorting nanotubes by their electronic structures and can also be readily applied to graphene. This surprisingly simple method thus enables nondestructive aqueous solution processing of high-quality carbon nanomaterials at large-scale and low-cost with the potential for a wide range of fundamental studies and applications, including, for example, transparent conductors, near-infrared imaging, and high-performance electronics.

The role of membrane cholesterol in determining bile acid cytotoxicity and cytoprotection of ursodeoxycholic acid

PubMed Central

Zhou, Yong; Doyen, Rand; Lichtenberger, Lenard M.

2013-01-01

In cholestatic liver diseases, the ability of hydrophobic bile acids to damage membranes of hepatocytes/ductal cells contributes to their cytotoxicity. However, ursodeoxycholic acid (UDC), a hydrophilic bile acid, is used to treat cholestasis because it protects membranes. It has been well established that bile acids associate with and solubilize free cholesterol (CHOL) contained within the lumen of the gallbladder because of their structural similarities. However, there is a lack of understanding of how membrane CHOL, which is a well-established membrane stabilizing agent, is involved in cytotoxicity of hydrophobic bile acids and the cytoprotective effect of UDC. We utilized phospholipid liposomes to examine the ability of membrane CHOL to influence toxicity of individual bile acids, such as UDC and the highly toxic sodium deoxycholate (SDC), as well as the cytoprotective mechanism of UDC against SDC-induced cytotoxicity by measuring membrane permeation and intramembrane dipole potential. The kinetics of bile acid solubilization of phosphatidylcholine liposomes containing various levels of CHOL was also characterized. It was found that the presence of CHOL in membranes significantly reduced the ability of bile acids to damage synthetic membranes. UDC effectively prevented damaging effects of SDC on synthetic membranes only in the presence of membrane CHOL, while UDC enhances the damaging effects of SDC in the absence of CHOL. This further demonstrates that the cytoprotective effects of UDC depend upon the level of CHOL in the lipid membrane. Thus, changes in cell membrane composition, such as CHOL content, potentially influence the efficacy of UDC as the primary drug used to treat cholestasis. PMID:19150330

Increased susceptibility to beta-lactam antibiotics and decreased porin content caused by envB mutations of Salmonella typhimurium.

PubMed Central

Oppezzo, O J; Avanzati, B; Antón, D N

1991-01-01

Isogenic derivatives carrying envB6, envB9, or envB+ alleles were obtained from a strain of Salmonella typhimurium that was partially resistant to mecillinam, a beta-lactam antibiotic specific for penicillin-binding protein 2 (PBP 2). Testing of the isogenic strains with several antibacterial agents demonstrated that envB mutations either increased resistance (mecillinam) or did not affect the response (imipemen) to beta-lactams that act primarily on PBP 2, while susceptibilities to beta-lactams that act on PBP 1B, PBP 3, or both were increased. Furthermore, the susceptibilities of envB strains to hydrophobic compounds such as rifampin, novobiocin, or chloramphenicol were not modified, even though their susceptibilities to deoxycholate and crystal violet were enhanced. Outer cell membranes of envB mutants presented a 50% reduction in protein content compared with that of the isogenic envB+ strains, and OmpF and OmpD porins were particularly affected by the reduction. No alteration in the amount or pattern of periplasmic proteins was noticed, and lipopolysaccharides from envB mutants appeared to be normal by sodium dodecyl sulfate-urea-polyacrylamide gel electrophoresis. By using derivatives that produced a plasmid-encoded beta-lactamase, it was demonstrated that envB cells are slightly less permeable to cephalothin than envB+ bacteria are. It is concluded that the high susceptibility of envB mutants to beta-lactams is due to the increased effectiveness of the antibiotics on PBP 1B, PBP 3, or both. Images PMID:1656857

Dissolved organic carbon fluxes in the Middle Atlantic Bight: An integrated approach based on satellite data and ocean model products

NASA Astrophysics Data System (ADS)

Mannino, Antonio; Signorini, Sergio R.; Novak, Michael G.; Wilkin, John; Friedrichs, Marjorie A. M.; Najjar, Raymond G.

2016-02-01

Continental margins play an important role in global carbon cycle, accounting for 15-21% of the global marine primary production. Since carbon fluxes across continental margins from land to the open ocean are not well constrained, we undertook a study to develop satellite algorithms to retrieve dissolved organic carbon (DOC) and combined these satellite data with physical circulation model products to quantify the shelf boundary fluxes of DOC for the U.S. Middle Atlantic Bight (MAB). Satellite DOC was computed through seasonal relationships of DOC with colored dissolved organic matter absorption coefficients, which were derived from an extensive set of in situ measurements. The multiyear time series of satellite-derived DOC stocks (4.9 Teragrams C; Tg) shows that freshwater discharge influences the magnitude and seasonal variability of DOC on the continental shelf. For the 2010-2012 period studied, the average total estuarine export of DOC into the MAB shelf is 0.77 Tg C yr-1 (year). The integrated DOC tracer fluxes across the shelf boundaries are 12.1 Tg C yr-1 entering the MAB from the southwest alongshore boundary, 18.5 Tg C yr-1 entering the MAB from the northeast alongshore boundary, and 29.0 Tg C yr-1 flowing out of the MAB across the entire length of the 100 m isobath. The magnitude of the cross-shelf DOC flux is quite variable in time (monthly) and space (north to south). The highly dynamic exchange of water along the shelf boundaries regulates the DOC budget of the MAB at subseasonal time scales.

The Influence of Submarine Groundwater Discharge on Nearshore Marine Dissolved Organic Carbon Reactivity, Concentration Dynamics, and Offshore Export

NASA Astrophysics Data System (ADS)

Goodridge, B.

2017-12-01

Dissolved organic carbon (DOC) is the largest pool of reduced carbon in the oceans, with a reservoir equivalent to atmospheric CO2. In nearshore marine regions, DOC sources include primary production, terrestrial DOC delivered by river discharge, and/or terrestrial and marine DOC delivered via submarine groundwater discharge (SGD). While the importance of SGD to coastal carbon cycling has been implicated, the actual influence of this process on nearshore carbon dynamics and offshore export has not been explicitly identified. This study, conducted at a predominantly marine-influenced intertidal beach-nearshore ocean system along the Santa Barbara, California coastline, aimed to address this knowledge gap. I coupled dark, temperature-controlled laboratory incubations, radioisotopic (Rn-222) SGD estimates, and a DOC box model to identify the influence of pore water mixing with seawater on nearshore DOC reactivity, concentration dynamics, and offshore export. Even with a relatively low volumetric contribution, SGD pore water mixing altered nearshore DOC reactivity, and elevated the nearshore DOC concentration by 0.9 to 5.6 µmol L-1 over nearshore seawater residence times ranging from 1 to 6 days. These elevated DOC concentrations were equivalent to 1.2 to 7.5% of the mean offshore DOC concentration taken during the summer months in the Santa Barbara Channel, when the coastal water column is highly thermally stratified. Despite the challenge of assessing carbon dynamics in physically and biogeochemically complex nearshore marine regions, this study demonstrates the need for future investigations to assess and account for SGD as a non-trivial component of coastal marine carbon cycles.

Climate change and dissolved organic carbon export to the Gulf of Maine

USGS Publications Warehouse

Huntington, Thomas G.; Balch, William M.; Aiken, George R.; Sheffield, Justin; Luo, Lifeng; Roesler, Collin S.; Camill, Philip

2016-01-01

Ongoing climate change is affecting the concentration, export (flux), and timing of dissolved organic carbon (DOC) exported to the Gulf of Maine (GoM) through changes in hydrologic regime. DOC export was calculated for water years 1950 through 2013 for 20 rivers and for water years 1930 through 2013 for 14 rivers draining to the GoM. DOC export was also estimated for the 21st century based on climate and hydrologic modeling in a previously published study. DOC export was calculated by using the regression model LOADEST to fit seasonally adjusted concentration discharge (C-Q) relations. Our results are an analysis of the sensitivity of DOC export to changes in hydrologic conditions over time since land cover and vegetation were held constant over time. Despite large interannual variability, all rivers had increasing DOC export during winter and these trends were significant (p < 0.05) in 10 out of 20 rivers for 1950 to 2013 and in 13 out of 14 rivers for 1930 to 2013. All rivers also had increasing annual export of DOC although fewer trends were statistically significant than for winter export. Projections for DOC export during the 21st century were variable depending on the climate model and greenhouse gas emission scenario that affected future river discharge through effects on precipitation and evapotranspiration. The most consistent result was a significant increase in DOC export in winter in all model-by-emission scenarios. DOC export was projected to decrease during the summer in all model-by-emission scenarios, with statistically significant decreases in half of the scenarios.

Dissolved organic carbon fluxes in the Middle Atlantic Bight: An integrated approach based on satellite data and ocean model products.

PubMed

Mannino, Antonio; Signorini, Sergio R; Novak, Michael G; Wilkin, John; Friedrichs, Marjorie A M; Najjar, Raymond G

2016-02-01

Continental margins play an important role in global carbon cycle, accounting for 15-21% of the global marine primary production. Since carbon fluxes across continental margins from land to the open ocean are not well constrained, we undertook a study to develop satellite algorithms to retrieve dissolved organic carbon (DOC) and combined these satellite data with physical circulation model products to quantify the shelf boundary fluxes of DOC for the U.S. Middle Atlantic Bight (MAB). Satellite DOC was computed through seasonal relationships of DOC with colored dissolved organic matter absorption coefficients, which were derived from an extensive set of in situ measurements. The multiyear time series of satellite-derived DOC stocks (4.9 Teragrams C; Tg) shows that freshwater discharge influences the magnitude and seasonal variability of DOC on the continental shelf. For the 2010-2012 period studied, the average total estuarine export of DOC into the MAB shelf is 0.77 Tg C yr -1 (year). The integrated DOC tracer fluxes across the shelf boundaries are 12.1 Tg C yr -1 entering the MAB from the southwest alongshore boundary, 18.5 Tg C yr -1 entering the MAB from the northeast alongshore boundary, and 29.0 Tg C yr -1 flowing out of the MAB across the entire length of the 100 m isobath. The magnitude of the cross-shelf DOC flux is quite variable in time (monthly) and space (north to south). The highly dynamic exchange of water along the shelf boundaries regulates the DOC budget of the MAB at subseasonal time scales.

High light intensity mediates a shift from allochthonous to autochthonous carbon use in phototrophic stream biofilms

NASA Astrophysics Data System (ADS)

Wagner, Karoline; Bengtsson, Mia M.; Findlay, Robert H.; Battin, Tom J.; Ulseth, Amber J.

2017-07-01

Changes in the riparian vegetation along stream channels, diurnal light availability, and longitudinal fluctuations in the local light regime in streams influence primary production and carbon (C) cycling in benthic stream biofilms. To investigate the influence of light availability on the uptake dynamics of autochthonous and allochthonous dissolved organic carbon (DOC) in benthic biofilms, we experimentally added 13C-labeled allochthonous DOC to biofilms grown under light intensities ranging from 5 to 152 μmol photons m-2 s-1. We calculated the net C flux, which showed that benthic biofilms released autochthonous DOC across the entire light gradient. Light availability and diurnal light patterns influenced C uptake by benthic biofilms. More allochthonous DOC was respired under low light availability and at night, whereas under high light availability and during the day mainly autochthonous C was respired by the benthic biofilm community. Furthermore, phenol oxidase activity (indicative of allochthonous DOC uptake) was more elevated under low light availability, whereas beta-glucosidase activity (indicative of autochthonous DOC use) increased with light intensity. Collectively, our results suggest that biofilms exposed to high light inputs preferentially used autochthonous DOC, whereas biofilms incubated at attenuated levels showed greater use of allochthonous DOC. This has implications for the spatial dynamics of DOC uptake in streams and speaks against the occurrence of priming effects in algal-dominated stream biofilms.

Influence of land cover on riverine dissolved organic carbon concentrations and export in the Three Rivers Headwater Region of the Qinghai-Tibetan Plateau.

PubMed

Ma, Xiaoliang; Liu, Guimin; Wu, Xiaodong; Smoak, Joseph M; Ye, Linlin; Xu, Haiyan; Zhao, Lin; Ding, Yongjian

2018-07-15

The Qinghai-Tibetan plateau (QTP) stores a large amount of soil organic carbon and is the headwater region for several large rivers in Asia. Therefore, it is important to understand the influence of environmental factors on river water quality and the dissolved organic carbon (DOC) export in this region. We examined the water physico-chemical characteristics, DOC concentrations and export rates of 7 rivers under typical land cover types in the Three Rivers Headwater Region during August 2016. The results showed that the highest DOC concentrations were recorded in the rivers within the catchment of alpine wet meadow and meadow. These same rivers had the lowest total suspended solids (TSS) concentrations. The rivers within steppe and desert had the lowest DOC concentrations and highest TSS concentrations. The discharge rates and catchment areas were negatively correlated with DOC concentrations. The SUVA 254 values were significantly negatively correlated with DOC concentrations. The results suggest that the vegetation degradation, which may represent permafrost degradation, can lead to a decrease in DOC concentration, but increasing DOC export and soil erosion. In addition, some of the exported DOC will rapidly decompose in the river, and therefore affect the regional carbon cycle, as well as the water quality in the source water of many large Asian rivers. Copyright © 2018 Elsevier B.V. All rights reserved.

Enhanced antitumor effects by docetaxel/LL37-loaded thermosensitive hydrogel nanoparticles in peritoneal carcinomatosis of colorectal cancer

PubMed Central

Fan, Rangrang; Tong, Aiping; Li, Xiaoling; Gao, Xiang; Mei, Lan; Zhou, Liangxue; Zhang, Xiaoning; You, Chao; Guo, Gang

2015-01-01

Intraperitoneal chemotherapy was explored in clinical trials as a promising strategy to improve the therapeutic effects of chemotherapy. In this work, we developed a biodegradable and injectable drug-delivery system by coencapsulation of docetaxel (Doc) and LL37 peptide polymeric nanoparticles (Doc+LL37 NPs) in a thermosensitive hydrogel system for colorectal peritoneal carcinoma therapy. Firstly, polylactic acid (PLA)-Pluronic L35-PLA (PLA-L35-PLA) was explored to prepare the biodegradable Doc+LL37 NPs using a water-in-oil-in-water double-emulsion solvent-evaporation method. Then, biodegradable and injectable thermosensitive PLA-L64-PLA hydrogel with lower sol–gel transition temperature at around body temperature was also prepared. Transmission electron microscopy revealed that the Doc+LL37 NPs formed with the PLA-L35-PLA copolymer were spherical. Fourier-transform infrared spectra certified that Doc and LL37 were encapsulated successfully. X-ray diffraction diagrams indicated that Doc was encapsulated amorphously. Intraperitoneal administration of Doc+LL37 NPs–hydrogel significantly suppressed the growth of HCT116 peritoneal carcinomatosis in vivo and prolonged the survival of tumor-bearing mice. Our results suggested that Doc+LL37 NPs–hydrogel may have potential clinical applications. PMID:26664119

Effect of wildfires on physicochemical changes of watershed dissolved organic matter.

PubMed

Revchuk, Alex D; Suffet, I H

2014-04-01

Physicochemical characterization of dissolved organic carbon (DOC) provides essential data to describe watershed characteristics after drastic changes caused by wildfires. Post-fire watershed behavior is important for water source selection, management, and drinking water treatment optimization. Using ash and other burned vegetation fragments, a leaching procedure was implemented to describe physicochemical changes to watershed DOC caused by wildfires. Samples were collected after the 2007 and 2009 wildfires near Santa Barbara, California. Substantial differences in size distribution (measured by ultrafiltration), polarity (measured by polarity rapid assessment method), and the origin of leached DOC (measured by fluorescence) were observed between burned and unburned sites. Recently burned ash had 10 times the DOC leaching potential, and was dominated by large size fragments, compared to weathered 2-year-old ash. Charged DOC fractions were found to positively correlate with DOC size, whereas hydrophobic and hydrophilic DOC fractions were not. Proteins were only observed in recently burned ash and were indicative of recent post-fire biological activity.

Simulating dissolved organic carbon dynamics at the swedish integrated monitoring sites with the integrated catchments model for carbon, INCA-C.

PubMed

Futter, M N; Löfgren, S; Köhler, S J; Lundin, L; Moldan, F; Bringmark, L

2011-12-01

Surface water concentrations of dissolved organic carbon ([DOC]) are changing throughout the northern hemisphere due to changes in climate, land use and acid deposition. However, the relative importance of these drivers is unclear. Here, we use the Integrated Catchments model for Carbon (INCA-C) to simulate long-term (1996-2008) streamwater [DOC] at the four Swedish integrated monitoring (IM) sites. These are unmanaged headwater catchments with old-growth forests and no major changes in land use. Daily, seasonal and long-term variations in streamwater [DOC] driven by runoff, seasonal temperature and atmospheric sulfate (SO₄(2-)) deposition were observed at all sites. Using INCA-C, it was possible to reproduce observed patterns of variability in streamwater [DOC] at the four IM sites. Runoff was found to be the main short-term control on [DOC]. Seasonal patterns in [DOC] were controlled primarily by soil temperature. Measured SO₄(2-) deposition explained some of the long-term [DOC] variability at all sites.

The conservative behavior of dissolved organic carbon in surface waters of the southern Chukchi Sea, Arctic Ocean, during early summer

PubMed Central

Tanaka, Kazuki; Takesue, Nobuyuki; Nishioka, Jun; Kondo, Yoshiko; Ooki, Atsushi; Kuma, Kenshi; Hirawake, Toru; Yamashita, Youhei

2016-01-01

The spatial distribution of dissolved organic carbon (DOC) concentrations and the optical properties of dissolved organic matter (DOM) determined by ultraviolet-visible absorbance and fluorescence spectroscopy were measured in surface waters of the southern Chukchi Sea, western Arctic Ocean, during the early summer of 2013. Neither the DOC concentration nor the optical parameters of the DOM correlated with salinity. Principal component analysis using the DOM optical parameters clearly separated the DOM sources. A significant linear relationship was evident between the DOC and the principal component score for specific water masses, indicating that a high DOC level was related to a terrigenous source, whereas a low DOC level was related to a marine source. Relationships between the DOC and the principal component scores of the surface waters of the southern Chukchi Sea implied that the major factor controlling the distribution of DOC concentrations was the mixing of plural water masses rather than local production and degradation. PMID:27658444

Performance evaluation of a biodiesel fuelled transportation engine retrofitted with a non-noble metal catalysed diesel oxidation catalyst for controlling unregulated emissions.

PubMed

Shukla, Pravesh Chandra; Gupta, Tarun; Agarwal, Avinash Kumar

2018-02-15

In present study, engine exhaust was sampled for measurement and analysis of unregulated emissions from a four cylinder transportation diesel engine using a state-of-the-art FTIR (Fourier transform infrared spectroscopy) emission analyzer. Test fuels used were Karanja biodiesel blend (B20) and baseline mineral diesel. Real-time emission measurements were performed for raw exhaust as well as exhaust sampled downstream of the two in-house prepared non-noble metal based diesel oxidation catalysts (DOCs) and a baseline commercial DOC based on noble metals. Two prepared non-noble metal based DOCs were based on Co-Ce mixed oxide and Lanthanum based perovskite catalysts. Perovskite based DOC performed superior compared to Co-Ce mixed oxide catalyst based DOC. Commercial noble metal based DOC was found to be the most effective in reducing unregulated hydrocarbon emissions in the engine exhaust, followed by the two in-house prepared non-noble metal based DOCs. Copyright © 2017 Elsevier B.V. All rights reserved.

Dissolved Organic Carbon in the North Atlantic Meridional Overturning Circulation.

PubMed

Fontela, Marcos; García-Ibáñez, Maribel I; Hansell, Dennis A; Mercier, Herlé; Pérez, Fiz F

2016-05-31

The quantitative role of the Atlantic Meridional Overturning Circulation (AMOC) in dissolved organic carbon (DOC) export is evaluated by combining DOC measurements with observed water mass transports. In the eastern subpolar North Atlantic, both upper and lower limbs of the AMOC transport high-DOC waters. Deep water formation that connects the two limbs of the AMOC results in a high downward export of non-refractory DOC (197 Tg-C·yr(-1)). Subsequent remineralization in the lower limb of the AMOC, between subpolar and subtropical latitudes, consumes 72% of the DOC exported by the whole Atlantic Ocean. The contribution of DOC to the carbon sequestration in the North Atlantic Ocean (62 Tg-C·yr(-1)) is considerable and represents almost a third of the atmospheric CO2 uptake in the region.

Dissolved Organic Carbon in the North Atlantic Meridional Overturning Circulation

PubMed Central

Fontela, Marcos; García-Ibáñez, Maribel I.; Hansell, Dennis A.; Mercier, Herlé; Pérez, Fiz F.

2016-01-01

The quantitative role of the Atlantic Meridional Overturning Circulation (AMOC) in dissolved organic carbon (DOC) export is evaluated by combining DOC measurements with observed water mass transports. In the eastern subpolar North Atlantic, both upper and lower limbs of the AMOC transport high-DOC waters. Deep water formation that connects the two limbs of the AMOC results in a high downward export of non-refractory DOC (197 Tg-C·yr−1). Subsequent remineralization in the lower limb of the AMOC, between subpolar and subtropical latitudes, consumes 72% of the DOC exported by the whole Atlantic Ocean. The contribution of DOC to the carbon sequestration in the North Atlantic Ocean (62 Tg-C·yr−1) is considerable and represents almost a third of the atmospheric CO2 uptake in the region. PMID:27240625

Investigating Forest Harvest Effects on DOC Concentration and Quality: An In Situ, High Resolution Approach to Quantifying DOC Export Dynamics

NASA Astrophysics Data System (ADS)

Jollymore, A. J.; Johnson, M. S.; Hawthorne, I.

2013-12-01

Justification: Forest harvest effects on water quality can signal alterations in hydrologic and ecologic processes incurred as a result of forest harvest activities. Organic matter (OM), specifically dissolved organic carbon (DOC), plays a number of important roles mediating UV-light penetration, redox reactivity and microbial activity within aquatic ecosystems. Quantification of DOC is typically pursued via grab sampling followed by chemical or spectrophotometric analysis, limiting the temporal resolution obtained as well as the accuracy of export calculations. The advent of field-deployable sensors capable of measuring DOC concentration and certain quality characteristics in situ provides the ability to observe dynamics at temporal scales necessary for accurate calculation of DOC flux, as well as the observation of dynamic changes in DOC quality on timescales impossible to observe through grab sampling. Methods: This study utilizes a field deployable UV-Vis spectrophotometer (spectro::lyzer, s::can, Austria) to investigate how forest harvest affects DOC export. The sensor was installed at an existing hydrologic monitoring site at the outlet of a headwater stream draining a small (91 hectare) second growth Douglasfir-dominated catchment near Campbell River on Vancouver Island, British Columbia. Measurement began late in 2009, prior to forest harvest and associated activities such as road building (which commenced in October 2010 and ended in early 2011), and continues to present. During this time - encompassing the pre, during and post-harvest conditions - the absorbance spectrum of stream water from 200 to 750 nm was measured. DOC concentration and spectroscopic indices related to DOC quality (including SUVA, which relates to the concentration of aromatic carbon, and spectral slope) were subsequently calculated for each spectra obtained at 30-minute intervals. Results and conclusions: High frequency measurements of DOC show that overall export of OM increased in the months following harvest. A major advantage of this study is the use of in situ measurements, allowing for high temporal resolution of DOC dynamics occurring within specific hydrologic events. For example, concentration-discharge relationships for both the pre- and post-logging periods demonstrate similar clockwise hysteresis during individual storm events, while the magnitude of change dramatically increased during the post-logging period. However, in situ measurements of SUVA over this period suggest that DOC quality may be less affected by forest harvest than overall DOC concentration, where high frequency data also allows for the observation of SUVA and spectral slope responses to specific hydrologic events during the pre- and post- harvest period.

Local and regional scale exchanges of dissolved organic carbon (DOC) between tidal wetlands and their adjacent coastal waters

NASA Astrophysics Data System (ADS)

Osburn, C. L.; Joshi, I.; Lebrasse, M. C.; Oviedo-Vargas, D.; Bianchi, T. S.; Bohnenstiehl, D. R.; D'Sa, E. J.; He, R.; Ko, D.; Arellano, A.; Ward, N. D.

2017-12-01

The contribution of blue carbon from tidal wetlands to the coastal ocean in the form of dissolved organic carbon (DOC) represents a terrestrial-aquatic linkage of increasing importance. DOC flux results will be presented from local (tidal creek) and regional (bays) scale studies in which various combinations of field observations, ocean-color satellite observations, and the outputs of high-resolution hydrodynamic models were used to estimate DOC export. The first project was located in Bald Head Creek, a tributary to the Cape Fear River estuary in eastern North Carolina (NC). DOC fluxes were computed using a bathymetric data collected via unmanned surface vehicle (USV) and a numerical hydrodynamic model (SCHISM) based on the relationships between colored dissolved organic matter (CDOM) absorption, DOC concentration, and salinity taken from field observations. Model predictions estimated an annual net export of DOC at 54 g C m-2 yr-1 from the tidal creek to the adjacent estuary. Carbon stable isotope (δ13C) values were used to estimate the contribution of wetland carbon to this export. In the second project, DOC fluxes from the Apalachicola Bay, FL, Barataria Bay, LA, were based on the development of algorithms between DOC and CDOM absorption derived from the VIIRS ocean color sensor. The Navy Coastal Ocean Model (NCOM) was used to compute salt flux estimates from each bay to the Louisiana-Texas shelf. The relationship between salinity and CDOM was used to estimate net annual DOC exports of 8.35 x 106 g C m-2 y-1 (Apalachicola Bay) and 7.14 x 106 g C m-2 yr-1 (Barataria Bay). These values approximate 13% and 9% of the annual loads of DOC from the Mississippi River to the Gulf of Mexico, respectively. CDOM and lignin were used in a mixing model to estimate wetland-derived DOC were 2% for Apalachicola Bay and 13% for Barataria Bay, the latter having one of the highest rates of relative sea level rise in North America. Results from our project demonstrated the utility of CDOM, amenable to high resolution observations from multiple platforms, as a basis for constraining the heterogeneity of DOC exports from tidal wetlands to estuaries and coastal waters using numerical models at local and regional scales.

Flux of carbon from 14C-enriched leaf litter throughout a forest soil mesocosm

DOE Office of Scientific and Technical Information (OSTI.GOV)

Froberg, Mats J.; Hanson, Paul J; Trumbore, Susan E.

2009-01-01

The role of DOC for the build-up of soil organic carbon pools is still not well known, but it is thought to play a role in the transport of carbon to a greater depth where it becomes more stable. The aim of this study was to elucidate within-year dynamics of carbon transport from litter to the O (Oe and Oa) and A horizons. Mesocosms with constructed soil profiles were used to study dynamics of C transport from 14C-enriched (about 1000 ) leaf litter to the Oe/Oa and A horizons as well as the mineralization of leaf litter. The mesocosms weremore » placed in the field for 17 months during which time fluxes and 14C content of DOC and CO2 were measured. Changes in 14C in leaf litter and bulk soil C pools were also recorded. Significant simultaneous release and immobilization of DOC occurring in both the O and A horizons was hypothesized. Contrary to our hypothesis, DOC released from the labeled Oi horizon was not retained within the Oe/Oa layer. DOC originating in the unlabeled Oe/Oa layer was also released for transport. Extensive retention of DOC occurred in the A horizon. DOC leaching from A horizon consisted of a mix of DOC from different sources, with a main fraction originating in the A horizon and a smaller fraction leached from the overlaying horizons. The C and 14C budget for the litter layer also indicated a surprisingly large amount of carbon with ambient Δ14C-signature to be respired from this layer. Data for this site also suggested significant contributions from throughfall to dissolved organic carbon (DOC) transport into and respiration from the litter layer. The results from this study showed that DOC retentionwas low in the O horizon and therefore not important for the O horizon carbon budget. In the A horizon DOC retention was extensive, but annual DOC input was small compared to C stocks and therefore not important for changes in soil C on an annual timescale.« less

Identification and analysis of low-molecular-weight dissolved organic carbon in subglacial basal ice ecosystems by ion chromatography

NASA Astrophysics Data System (ADS)

O'Donnell, Emily C.; Wadham, Jemma L.; Lis, Grzegorz P.; Tranter, Martyn; Pickard, Amy E.; Stibal, Marek; Dewsbury, Paul; Fitzsimons, Sean

2016-07-01

Determining the concentration and composition of dissolved organic carbon (DOC) in glacial ecosystems is important for assessments of in situ microbial activity and contributions to wider biogeochemical cycles. Nonetheless, there is limited knowledge of the abundance and character of DOC in basal ice and the subglacial environment and a lack of quantitative data on low-molecular-weight (LMW) DOC components, which are believed to be highly bioavailable to microorganisms. We investigated the abundance and composition of DOC in basal ice via a molecular-level DOC analysis. Spectrofluorometry and a novel ion chromatographic method, which has been little utilized in glacial science for LMW-DOC determinations, were employed to identify and quantify the major LMW fractions (free amino acids, carbohydrates, and carboxylic acids) in basal ice from four glaciers, each with a different type of overridden material (i.e. the pre-entrainment sedimentary type such as lacustrine material or palaeosols). Basal ice from Joyce Glacier (Antarctica) was unique in that 98 % of the LMW-DOC was derived from the extremely diverse free amino acid (FAA) pool, comprising 14 FAAs. LMW-DOC concentrations in basal ice were dependent on the bioavailability of the overridden organic carbon (OC), which in turn was influenced by the type of overridden material. Mean LMW-DOC concentrations in basal ice from Russell Glacier (Greenland), Finsterwalderbreen (Svalbard), and Engabreen (Norway) were low (0-417 nM C), attributed to the relatively refractory nature of the OC in the overridden palaeosols and bedrock. In contrast, mean LMW-DOC concentrations were an order of magnitude higher (4430 nM C) in basal ice from Joyce Glacier, a reflection of the high bioavailability of the overridden lacustrine material (> 17 % of the sediment OC comprised extractable carbohydrates, a proxy for bioavailable OC). We find that the overridden material may act as a direct (via abiotic leaching) and indirect (via microbial cycling) source of DOC to the subglacial environment and provides a range of LMW-DOC compounds that may stimulate microbial activity in wet subglacial sediments.

The effectiveness of arbuscular-mycorrhizal fungi and Aspergillus niger or Phanerochaete chrysosporium treated organic amendments from olive residues upon plant growth in a semi-arid degraded soil.

PubMed

Medina, A; Roldán, A; Azcón, R

2010-12-01

Arbuscular mycorrhizal (AM) fungi and a residue from dry olive cake (DOC) supplemented with rock phosphate (RP) and treated with either Aspergillus niger (DOC-A) or Phanerochaete chrysosporium (DOC-P), were assayed in a natural, semi-arid soil using Trifolium repens or Dorycnium pentaphyllum plants. The effects of the AM fungi and/or DOC-A were compared with P-fertilisation (P) over eleven successive harvests to evaluate the persistence of the effectiveness of the treatments. The biomass of dually-treated plants after four successive harvests was greater than that obtained for non-treated plants or those receiving the AM inoculum or DOC-A treatments after eleven yields. The AM inoculation was critical for obtaining plant growth benefit from the application of fermented DOC-A residue. The abilities of the treatments to prevent plant drought stress were also assayed. Drought-alleviating effects were evaluated in terms of plant growth, proline and total sugars concentration under alternative drought and re-watering conditions (8th and 9th harvests). The concentrations of both compounds in plant biomass increased under drought when DOC-A amendment and AM inoculation were employed together: they reinforced the plant drought-avoidance capabilities and anti-oxidative defence. Water stress was less compensated in P-fertilised than in DOC-A-treated plants. DOC-P increased D. pentaphyllum biomass, shoot P content, nodule number and AM colonisation, indicating the greater DOC-transforming ability of P. chrysosporium compared to A. niger. The lack of AM colonisation and nodulation in this soil was compensated by the application of DOC-P, particularly with AM inoculum. The management of natural resources (organic amendments and soil microorganisms) represents an important strategy that assured the growth, nutrition and plant establishment in arid, degraded soils, preventing the damage that arises from limited water and nutrient supply. Copyright © 2010 Elsevier Ltd. All rights reserved.

Relative importance of multiple factors on terrestrial loading of DOC to Arctic river networks

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kicklighter, David W.; Hayes, Daniel J; Mcclelland, James W

2014-01-01

Terrestrial carbon dynamics influence the contribution of dissolved organic carbon (DOC) to river networks in addition to controlling carbon fluxes between the land surface and the atmosphere. In this study, we use a biogeochemical process model to simulate the lateral transfer of DOC from land to the Arctic Ocean via riverine transport. We estimate that the pan-arctic watershed has contributed, on average, 32 Tg C/yr of DOC to the Arctic Ocean over the 20th century with most coming from the extensive area of boreal deciduous needle-leaved forests and forested wetlands in Eurasian watersheds. We also estimate that the rate ofmore » terrestrial DOC loading has been increasing by 0.037 Tg C/yr2 over the 20th century primarily as a result of increases in air temperatures and precipitation. These increases have been partially compensated by decreases in terrestrial DOC loading caused by wildfires. Other environmental factors (CO2 fertilization, ozone pollution, atmospheric nitrogen deposition, timber harvest, agriculture) are estimated to have relatively small effects on terrestrial DOC loading to arctic rivers. The effects of the various environmental factors on terrestrial carbon dynamics have both compensated and enhanced concurrent effects on hydrology to influence terrestrial DOC loading. Future increases in riverine DOC concentrations and export may occur from warming-induced increases in terrestrial DOC production associated with enhanced microbial metabolism and the exposure of additional organic matter from permafrost degradation along with decreases in water yield associated with warming-induced increases in evapotranspiration. Improvements in simulating terrestrial DOC loading to pan-arctic rivers in the future will require better information on the spatial distribution of precipitation and its temporal trends, carbon dynamics of larch-dominated ecosystems in eastern Siberia, and the role of industrial organic effluents on carbon budgets of rivers in western Russia.« less

Designing a Dynamic Data Driven Application System for Estimating Real-Time Load of DOC in a River

NASA Astrophysics Data System (ADS)

Ouyang, Y.; None

2011-12-01

Understanding the dynamics of naturally occurring dissolved organic carbon (DOC) in a river is central to estimating surface water quality, aquatic carbon cycling, and climate change. Currently, determination of DOC in surface water is primarily accomplished by manually collecting samples for laboratory analysis, which requires at least 24 hours. In other words, no effort has been devoted to monitoring real-time variations of DOC in a river due to the lack of suitable and/or cost-effective wireless sensors. However, when considering human health, carbon footprints, and effects of urbanization, industry, and agriculture on water resource supply, timely DOC information may be critical. We have developed here a new paradigm, a dynamic data driven application system (DDDAS), for estimating the real-time load of DOC into a river. This DDDAS consisted of the following four components: (1) a Visual Basic (VB) program for downloading US Geological Survey real-time chlorophyll and discharge data; (2) a STELLA model for evaluating real-time DOC load based on the relationship between chlorophyll a, DOC, and river discharge; (3) a batch file for linking the VB program and STELLA model; and (4) a Microsoft Windows Scheduled Tasks wizard for executing the model and displaying output on a computer screen at selected times. Results show that the real-time load of DOC into the St. Johns River basin near Satsuma, Putnam County, Florida, USA varied over a range from -13,143 to 29,248 kg/h at the selected site in Florida, USA. The negative loads occurred because of the back flow in the estuarine reach of the river. The cumulative load of DOC in the river for the selected site at the end of the simulation (178 hours) was about 1.2 tons. Our results support the utility of the DDDAS developed in this study for estimating the real-time variations of DOC in river ecosystems.

Dissolved Organic Matter Land-Ocean Linkages in the Arctic

NASA Astrophysics Data System (ADS)

Mann, P. J.; Spencer, R. M.; Hernes, P. J.; Tank, S. E.; Striegl, R.; Dyda, R. Y.; Peterson, B. J.; McClelland, J. W.; Holmes, R. M.

2012-04-01

Rivers draining into the Arctic Ocean exhibit high concentrations of terrigenous dissolved organic carbon (DOC), and recent studies indicate that DOC export is changing due to climatic warming and alteration in permafrost condition. The fate of exported DOC in the Arctic Ocean is important for understanding the regional carbon cycle and remains a point of discussion in the literature. As part of the NSF funded Arctic Great Rivers Observatory (Arctic-GRO) project, samples were collected for DOC, chromophoric and fluorescent dissolved organic matter (CDOM & FDOM) and lignin phenols from the Ob', Yenisey, Lena, Kolyma, Mackenzie and Yukon rivers in 2009 - 2010. DOC and lignin concentrations were elevated during the spring freshet and measurements related to DOC composition indicated an increasing contribution from terrestrial vascular plant sources at this time of year (e.g. lignin carbon-normalized yield, CDOM spectral slope, SUVA254, humic-like fluorescence). CDOM absorption was found to correlate strongly with both DOC (r2=0.83) and lignin concentration (r2=0.92) across the major arctic rivers. Lignin composition was also successfully modeled using FDOM measurements decomposed using PARAFAC analysis. Utilizing these relationships we modeled loads for DOC and lignin export from high-resolution CDOM measurements (daily across the freshet) to derive improved flux estimates, particularly from the dynamic spring discharge maxima period when the majority of DOC and lignin export occurs. The new load estimates for DOC and lignin are higher than previous evaluations, emphasizing that if these are more representative of current arctic riverine export, terrigenous DOC is transiting through the Arctic Ocean at a faster rate than previously thought. It is apparent that higher resolution sampling of arctic rivers is exceptionally valuable with respect to deriving accurate fluxes and we highlight the potential of CDOM in this role for future studies and the applicability of in-situ CDOM sensors.

Multi-site Field Verification of Laboratory Derived FDOM Sensor Corrections: The Good, the Bad and the Ugly

NASA Astrophysics Data System (ADS)

Saraceno, J.; Shanley, J. B.; Aulenbach, B. T.

2014-12-01

Fluorescent dissolved organic matter (FDOM) is an excellent proxy for dissolved organic carbon (DOC) in natural waters. Through this relationship, in situ FDOM can be utilized to capture both high frequency time series and long term fluxes of DOC in small streams. However, in order to calculate accurate DOC fluxes for comparison across sites, in situ FDOM data must be compensated for matrix effects. Key matrix effects, include temperature, turbidity and the inner filter effect due to color. These interferences must be compensated for to develop a reasonable relationship between FDOM and DOC. In this study, we applied laboratory-derived correction factors to real time data from the five USGS WEBB headwater streams in order to gauge their effectiveness across a range of matrix effects. The good news is that laboratory derived correction factors improved the predicative relationship (higher r2) between DOC and FDOM when compared to uncorrected data. The relative importance of each matrix effect (i.e. temperature) varied by site and by time, implying that each and every matrix effect should be compensated for when available. In general, temperature effects were more important on longer time scales, while corrections for turbidity and DOC inner filter effects were most prevalent during hydrologic events, when the highest instantaneous flux of DOC occurred. Unfortunately, even when corrected for matrix effects, in situ FDOM is a weaker predictor of DOC than A254, a common surrogate for DOC, implying that either DOC fluoresces at varying degrees (but should average out over time), that some matrix effects (e.g. pH) are either unaccounted for or laboratory-derived correction factors do not encompass the site variability of particles and organics. The least impressive finding is that the inherent dependence on three variables in the FDOM correction algorithm increases the likelihood of record data gaps which increases the uncertainty in calculated DOC flux values.

Dynamics of dissolved organic carbon (DOC) through stormwater basins designed for groundwater recharge in urban area: Assessment of retention efficiency.

PubMed

Mermillod-Blondin, Florian; Simon, Laurent; Maazouzi, Chafik; Foulquier, Arnaud; Delolme, Cécile; Marmonier, Pierre

2015-09-15

Managed aquifer recharge (MAR) has been developed in many countries to limit the risk of urban flooding and compensate for reduced groundwater recharge in urban areas. The environmental performances of MAR systems like infiltration basins depend on the efficiency of soil and vadose zone to retain stormwater-derived contaminants. However, these performances need to be finely evaluated for stormwater-derived dissolved organic matter (DOM) that can affect groundwater quality. Therefore, this study examined the performance of MAR systems to process DOM during its transfer from infiltration basins to an urban aquifer. DOM characteristics (fluorescent spectroscopic properties, biodegradable and refractory fractions of dissolved organic carbon -DOC-, consumption by micro-organisms during incubation in slow filtration sediment columns) were measured in stormwater during its transfer through three infiltration basins during a stormwater event. DOC concentrations sharply decreased from surface to the aquifer for the three MAR sites. This pattern was largely due to the retention of biodegradable DOC which was more than 75% for the three MAR sites, whereas the retention of refractory DOC was more variable and globally less important (from 18% to 61% depending on MAR site). Slow filtration column experiments also showed that DOC retention during stormwater infiltration through soil and vadose zone was mainly due to aerobic microbial consumption of the biodegradable fraction of DOC. In parallel, measurements of DOM characteristics from groundwaters influenced or not by MAR demonstrated that stormwater infiltration increased DOC quantity without affecting its quality (% of biodegradable DOC and relative aromatic carbon content -estimated by SUVA254-). The present study demonstrated that processes occurring in soil and vadose zone of MAR sites were enough efficient to limit DOC fluxes to the aquifer. Nevertheless, the enrichments of DOC concentrations measured in groundwater below infiltration basins need to be considered in future studies to especially assess their impact on groundwater quality. Copyright © 2015 Elsevier Ltd. All rights reserved.

Online stable isotope analysis of dissolved organic carbon size classes using size exclusion chromatography coupled to an isotope ratio mass spectrometer.

PubMed

Malik, Ashish; Scheibe, Andrea; LokaBharathi, P A; Gleixner, Gerd

2012-09-18

Stable isotopic content of dissolved organic carbon (δ(13)C-DOC) provides valuable information on its origin and fate. In an attempt to get additional insights into DOC cycling, we developed a method for δ(13)C measurement of DOC size classes by coupling high-performance liquid chromatography (HPLC)-size exclusion chromatography (SEC) to online isotope ratio mass spectrometry (IRMS). This represents a significant methodological contribution to DOC research. The interface was evaluated using various organic compounds, thoroughly tested with soil-water from a C3-C4 vegetation change experiment, and also applied to riverine and marine DOC. δ(13)C analysis of standard compounds resulted in excellent analytical precision (≤0.3‰). Chromatography resolved soil DOC into 3 fractions: high molecular weight (HMW; 0.4-10 kDa), low molecular weight (LMW; 50-400 Da), and retained (R) fraction. Sample reproducibility for measurement of δ(13)C-DOC size classes was ±0.25‰ for HMW fraction, ± 0.54‰ for LMW fraction, and ±1.3‰ for R fraction. The greater variance in δ(13)C values of the latter fractions was due to their lower concentrations. The limit of quantification (SD ≤0.6‰) for each size fraction measured as a peak is 200 ng C (2 mg C/L). δ(13)C-DOC values obtained in SEC mode correlated significantly with those obtained without column in the μEA mode (p < 0.001, intercept 0.17‰), which rules out SEC-associated isotopic effects or DOC loss. In the vegetation change experiment, fractions revealed a clear trend in plant contribution to DOC; those in deeper soils and smaller size fractions had less plant material. It was also demonstrated that the technique can be successfully applied to marine and riverine DOC without further sample pretreatment.

The Spatial and Temporal Distribution of Dissolved Organic Carbon Exported from Three Chinese Rivers to the China Sea

PubMed Central

Shi, Guohua; Peng, Changhui; Wang, Meng; Shi, Shengwei; Yang, Yanzheng; Chu, Junyao; Zhang, Junjun; Lin, Guanghui; Shen, Yan; Zhu, Qiuan

2016-01-01

The lateral transport of dissolved organic carbon (DOC) plays an important role in linking the carbon cycles of terrestrial and aquatic ecosystems. Neglecting the lateral flow of dissolved organic carbon can lead to an underestimation of the organic carbon budget of terrestrial ecosystems. It is thus necessary to integrate DOC concentrations and flux into carbon cycle models, particularly with regard to the development of models that are intended to directly link terrestrial and ocean carbon cycles. However, to achieve this goal, more accurate information is needed to better understand and predict DOC dynamics. In this study, we compiled an inclusive database of available data collected from the Yangtze River, Yellow River and Pearl River in China. The database is collected based on online literature survey and analysed by statistic method. Overall, our results revealed a positive correlation between DOC flux and discharge in all three rivers, whereas the DOC concentration was more strongly correlated with the regional net primary productivity (NPP). We estimated the total DOC flux exported by the three rivers into the China Sea to be approximately 2.73 Tg yr-1. Specifically, the annual flux of DOC from the Yangtze River, Yellow River and Pearl River was estimated to be 1.85 Tg yr-1, 0.06 Tg yr-1 and 0.82 Tg yr-1, respectively, and the average annual DOC concentrations were estimated to be 2.24 ± 0.53 mg L-1, 2.70 ± 0.38 mg L-1 and 1.51 ± 0.09 mg L-1, respectively. Seasonal variations in DOC concentrations are greatly influenced by the interaction between temperature and precipitation. NPP is significantly and positively related to the DOC concentration in the Yangtze River and the Pearl River. In addition, differences in climate and the productivity of the vegetation may influence both the flux and concentrations of DOC transported by the rivers and thus potentially affect estuarine geochemistry. PMID:27755581

Sedimentary sources of old high molecular weight dissolved organic carbon from the ocean margin benthic nepheloid layer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guo, L. Santschi, P.H.

2000-02-01

Average {sup 14}C ages of dissolved organic carbon (DOC) in the ocean are 3--6,000 years, and are influenced by old DOC from continental margins. However, sources of DOC from terrestrial, autochthonous, and sedimentary organic carbon seem to be too young to be responsible for the old DOC observed in the ocean. Since colloidal organic carbon (COC, i.e., high molecular weight DOC), which is chemically very similar to that of bulk DOC, can be effectively isolated from seawater using cross-flow ultrafiltration, it can hold clues to sources and pathways of DOC turnover in the ocean. Radiocarbon measurements on COC in themore » water column and benthic nepheloid layer (BNL) from two continental margin areas (the Middle Atlantic Bight and the Gulf of Mexico) and controlled laboratory experiments were carried out to study sources of old DOC in the ocean margin areas. Vertical distributions of suspended particulate matter (SPM), particulate organic carbon (POC), nitrogen (PON), and DOC in the water column and bottom waters near the sediment-water interface all demonstrate a well developed benthic nepheloid layer in both ocean margin areas. COC from the BNL was much older than COC from the overlying water column. These results, together with strong concentration gradients of SPM, POC, PON, and DOC, suggest a sedimentary source for organic carbon species and possibly for old COC as well in BNL waters. This is confirmed by the results from controlled laboratory experiments. The heterogeneity of {Delta}{sup 14}C signatures in bulk SOC thus points to a preferential release of old organic components from sediment resuspension, which can be the transport mechanism of the old benthic COC observed in ocean margin areas. Old COC from continental margin nepheloid layers may thus be a potential source of old DOC to the deep ocean.« less

Decreasing DOC trends in soil solution along the hillslopes at two IM sites in southern Sweden--geochemical modeling of organic matter solubility during acidification recovery.

PubMed

Löfgren, Stefan; Gustafsson, Jon Petter; Bringmark, Lage

2010-12-01

Numerous studies report increased concentrations of dissolved organic carbon (DOC) during the last two decades in boreal lakes and streams in Europe and North America. Recently, a hypothesis was presented on how various spatial and temporal factors affect the DOC dynamics. It was concluded that declining sulphur deposition and thereby increased DOC solubility, is the most important driver for the long-term DOC concentration trends in surface waters. If this recovery hypothesis is correct, the DOC levels should increase both in the soil solution as well as in the surrounding surface waters as soil pH rises and the ionic strength declines due to the reduced input of SO(4)(2-) ions. In this project a geochemical model was set up to calculate the net humic charge and DOC solubility trends in soils during the period 1996-2007 at two integrated monitoring sites in southern Sweden, showing clear signs of acidification recovery. The Stockholm Humic Model was used to investigate whether the observed DOC solubility is related to the humic charge and to examine how pH and ionic strength influence it. Soil water data from recharge and discharge areas, covering both podzols and riparian soils, were used. The model exercise showed that the increased net charge following the pH increase was in many cases counteracted by a decreased ionic strength, which acted to decrease the net charge and hence the DOC solubility. Thus, the recovery from acidification does not necessarily have to generate increasing DOC trends in soil solution. Depending on changes in pH, ionic strength and soil Al pools, the trends might be positive, negative or indifferent. Due to the high hydraulic connectivity with the streams, the explanations to the DOC trends in surface waters should be searched for in discharge areas and peat lands. Copyright © 2010 Elsevier B.V. All rights reserved.

Century-long increasing trend and variability of dissolved organic carbon export from the Mississippi River basin driven by natural and anthropogenic forcing

NASA Astrophysics Data System (ADS)

Ren, Wei; Tian, Hanqin; Cai, Wei-Jun; Lohrenz, Steven E.; Hopkinson, Charles S.; Huang, Wei-Jen; Yang, Jia; Tao, Bo; Pan, Shufen; He, Ruoying

2016-09-01

There has been considerable debate as to how natural forcing and anthropogenic activities alter the timing and magnitude of the delivery of dissolved organic carbon (DOC) to the coastal ocean, which has ramifications for the ocean carbon budget, land-ocean interactions, and coastal life. Here we present an analysis of DOC export from the Mississippi River to the Gulf of Mexico during 1901-2010 as influenced by changes in climate, land use and management practices, atmospheric CO2, and nitrogen deposition, through the integration of observational data with a coupled hydrologic/biogeochemical land model. Model simulations show that DOC export in the 2000s increased more than 40% since the 1900s. For the recent three decades (1981-2010), however, our simulated DOC export did not show a significant increasing trend, which is consistent with observations by U.S. Geological Survey. Our factorial analyses suggest that land use and land cover change, including land management practices (LMPs: i.e., fertilization, irrigation, tillage, etc.), were the dominant contributors to the century-scale trend of rising total riverine DOC export, followed by changes in atmospheric CO2, nitrogen deposition, and climate. Decadal and interannual variations of DOC export were largely attributed to year-to-year climatic variability and extreme flooding events, which have been exacerbated by human activity. LMPs show incremental contributions to DOC increase since the 1960s, indicating the importance of sustainable agricultural practices in coping with future environmental changes such as extreme flooding events. Compared to the observational-based estimate, the modeled DOC export was 20% higher, while DOC concentrations were slightly lower. Further refinements in model structure and input data sets should enable reductions in uncertainties in our prediction of century-long trends in DOC.

Assessing the relative bioavailability of DOC in regional groundwater systems

USGS Publications Warehouse

Chapelle, Francis H.; Bradley, Paul M.; Journey, Celeste A.; McMahon, Peter B.

2013-01-01

It has been hypothesized that the degree to which a hyperbolic relationship exists between concentrations of dissolved organic carbon (DOC) and dissolved oxygen (DO) in groundwater may indicate the relative bioavailability of DOC. This hypothesis was examined for 73 different regional aquifers of the United States using 7745 analyses of groundwater compiled by the National Water Assessment (NAWQA) program of the U.S. Geological Survey. The relative reaction quotient (RRQ), a measure of the curvature of DOC concentrations plotted versus DO concentrations and regressed to a decaying hyperbolic equation, was used to assess the relative bioavailability of DOC. For the basalt aquifer of Oahu, Hawaii, RRQ values were low (0.0013 mM−2), reflecting a nearly random relationship between DOC and DO concentrations. In contrast, on the island of Maui, treated sewage effluent injected into a portion of the basalt aquifer resulted in pronounced hyperbolic DOC-DO behavior and a higher RRQ (142 mM−2). RRQ values for the 73 aquifers correlated positively with mean concentrations of ammonia, dissolved iron, and manganese, and correlated negatively with mean pH. This indicates that greater RRQ values are associated with greater concentrations of the final products of microbial reduction reactions. RRQ values and DOC concentrations were negatively correlated with the thickness of the unsaturated zone (UNST) and depth to the top of the screened interval. Finally, RRQ values were positively correlated with mean annual precipitation (MAP), and the highest observed RRQ values were associated with aquifers receiving MAP rates ranging between 900 and 1300 mm/year. These results are uniformly consistent with the hypothesis that the hyperbolic behavior of DOC-DO plots, as quantified by the RRQ metric, can be an indicator of relative DOC bioavailability in groundwater systems.

The effect of drought on dissolved organic carbon (DOC) release from peatland soil and vegetation sources

NASA Astrophysics Data System (ADS)

Ritson, Jonathan P.; Brazier, Richard E.; Graham, Nigel J. D.; Freeman, Chris; Templeton, Michael R.; Clark, Joanna M.

2017-06-01

Drought conditions are expected to increase in frequency and severity as the climate changes, representing a threat to carbon sequestered in peat soils. Downstream water treatment works are also at risk of regulatory compliance failures and higher treatment costs due to the increase in riverine dissolved organic carbon (DOC) often observed after droughts. More frequent droughts may also shift dominant vegetation in peatlands from Sphagnum moss to more drought-tolerant species. This paper examines the impact of drought on the production and treatability of DOC from four vegetation litters (Calluna vulgaris, Juncus effusus, Molinia caerulea and Sphagnum spp.) and a peat soil. We found that mild droughts caused a 39.6 % increase in DOC production from peat and that peat DOC that had been exposed to oxygen was harder to remove by conventional water treatment processes (coagulation/flocculation). Drought had no effect on the amount of DOC production from vegetation litters; however large variation was observed between typical peatland species (Sphagnum and Calluna) and drought-tolerant grassland species (Juncus and Molinia), with the latter producing more DOC per unit weight. This would therefore suggest the increase in riverine DOC often observed post-drought is due entirely to soil microbial processes and DOC solubility rather than litter layer effects. Long-term shifts in species diversity may, therefore, be the most important impact of drought on litter layer DOC flux, whereas pulses related to drought may be observed in peat soils and are likely to become more common in the future. These results provide evidence in support of catchment management which increases the resilience of peat soils to drought, such as ditch blocking to raise water tables.

Sunlight Controls Water Column Processing of Carbon in Arctic Freshwaters

NASA Astrophysics Data System (ADS)

Cory, R. M.; Ward, C. P.; Crump, B. C.; Kling, G. W.

2014-12-01

Carbon (C) in thawing permafrost soils may have global impacts on climate change, yet controls on its processing and fate are poorly understood. The dominant fate of dissolved organic C (DOC) released from soils to inland waters is either complete oxidation to CO2 or partial oxidation and river export to oceans. Both processes are most often attributed to bacterial respiration, but we recently showed that photochemical oxidation exceeds rates of respiration and accounts for 70-95% of total DOC processed in the water column of arctic lakes and rivers. While the overall dominance of photochemical processing in streams and lakes remained, the fate of DOC varied consistently by water type. In small streams DOC was mainly mineralized by sunlight to CO2, while in lakes the main fate of DOC was partial photo-oxidation. Large rivers were intermediate between these end members, and photo-mineralization to CO2 was about equal to or less than partial photo-oxidation. We suggest this pattern is a result of light-exposure history, where DOC leached from soils into headwater streams has little prior light exposure and is labile to complete photo-oxidation, but as light exposure increases moving downstream and into lakes with longer residence times the DOC photo-lability declines. Thus as easily photo-mineralized moieties are removed, DOC fate shifts toward partial photo-oxidation and downstream export in rivers and lakes. At the basin scale, photochemical processing of DOC is about one third of the total CO2 released from surface waters, and is thus an important, newly measured component of the Arctic C budget. We also suggest that these photochemical transformations of DOC will occur in any shallow surface water, and could be important for better understanding inland water carbon cycling.

Drought causes step-changes in catchment-scale carbon export from peatland catchments

NASA Astrophysics Data System (ADS)

Howden, Nicholas; Worrall, Fred; Burt, Tim

2015-04-01

Increases in fluvial DOC concentrations in world rivers, particularly those that drain areas of peatland, have been observed for some years, suggesting an increase in carbon loss from the terrestrial biosphere. But it has not been straightforward to identify what causes these increases due to a lack of long-term time series to characterise both observed DOC concentrations and potential drivers. The York Waterworks Company (York, UK) abstracted drinking water from the Yorkshire Ouse just upstream of the city from the late 1800s until 2002. During the period August 1945 to December 2002, records of monthly-average DOC concentrations were kept (using water colour as a surrogate). From January 2003 onwards, the Environment Agency of England and Wales (EA) continued the monitoring, thus providing a 68-year record of monthly-average DOC concentrations in the Yorkshire Ouse, which is the longest DOC time series ever reported for a catchment with significant peat cover. We use the Yorkshire Ouse DOC record to develop a new method that shows how changes in DOC concentration and river flow have influenced carbon fluxes in the Ouse for the latter half of the 20th century and show that the only major changes in DOC flux are caused by step-increases in concentration following severe drought. We then use this method to identify a similar effect in other DOC records for UK rivers. The results suggest that increases in DOC export are due more to discrete events than to the impact of continuous drivers (such as increasing temperatures or changing atmospheric deposition), and also show these increases not to be reversed for at least four decades.

Greenland Ice Sheet exports labile organic carbon to the Arctic oceans

NASA Astrophysics Data System (ADS)

Lawson, E. C.; Wadham, J. L.; Tranter, M.; Stibal, M.; Lis, G. P.; Butler, C. E. H.; Laybourn-Parry, J.; Nienow, P.; Chandler, D.; Dewsbury, P.

2013-12-01

Runoff from small glacier systems contains dissolved organic carbon (DOC), rich in protein-like, low molecular weight (LMW) compounds, designating glaciers as an important source of bioavailable carbon for downstream heterotrophic activity. Fluxes of DOC and particulate organic carbon (POC) exported from large Greenland catchments, however, remain unquantified, despite the Greenland Ice Sheet (GrIS) being the largest source of global glacial runoff (ca. 400 km3 yr-1). We report high and episodic fluxes of POC and DOC from a large (1200 km2) GrIS catchment during contrasting melt seasons. POC dominates organic carbon (OC) export (70-89% on average), is sourced from the ice sheet bed and contains a significant bioreactive component (9% carbohydrates). A major source for the "bioavailable" (free carbohydrates) LMW-DOC fraction is microbial activity on the ice sheet surface, with some further addition of LMW-DOC to meltwaters by biogeochemical processes at the ice sheet bed. The bioavailability of the exported DOC (30-58%) to downstream marine microorganisms is similar to that reported from other glacial watersheds. Annual fluxes of DOC and free carbohydrates during two melt seasons were similar, despite the ~ 2 fold difference in runoff fluxes, suggesting production-limited DOC sources. POC fluxes were also insensitive to an increase in seasonal runoff volumes, indicating supply-limitation of suspended sediment in runoff. Scaled to the GrIS, the combined DOC and POC fluxes (0.13-0.17 Tg C yr-1 DOC, 0.36-1.52 Tg C yr-1 mean POC) are of a similar order of magnitude to a large Arctic river system, and hence represent an important OC source to the North Atlantic, Greenland and Labrador Seas.

Abundance, stable isotopic composition, and export fluxes of DOC, POC, and DIC from the Lower Mississippi River during 2006–2008

USGS Publications Warehouse

Cai, Yihua; Guo, Laodong; Wang, Xuri; Aiken, George R.

2015-01-01

Sources, abundance, isotopic compositions, and export fluxes of dissolved inorganic carbon (DIC), dissolved and colloidal organic carbon (DOC and COC), and particulate organic carbon (POC), and their response to hydrologic regimes were examined through monthly sampling from the Lower Mississippi River during 2006–2008. DIC was the most abundant carbon species, followed by POC and DOC. Concentration and δ13C of DIC decreased with increasing river discharge, while those of DOC remained fairly stable. COC comprised 61 ± 3% of the bulk DOC with similar δ13C abundances but higher percentages of hydrophobic organic acids than DOC, suggesting its aromatic and diagenetically younger status. POC showed peak concentrations during medium flooding events and at the rising limb of large flooding events. While δ13C-POC increased, δ15N of particulate nitrogen decreased with increasing discharge. Overall, the differences in δ13C between DOC or DIC and POC show an inverse correlation with river discharge. The higher input of soil organic matter and respired CO2 during wet seasons was likely the main driver for the convergence of δ13C between DIC and DOC or POC, whereas enhanced in situ primary production and respiration during dry seasons might be responsible for their isotopic divergence. Carbon export fluxes from the Mississippi River were estimated to be 13.6 Tg C yr−1 for DIC, 1.88 Tg C yr−1 for DOC, and 2.30 Tg C yr−1 for POC during 2006–2008. The discharge-normalized DIC yield decreased during wet seasons, while those of POC and DOC increased and remained constant, respectively, implying variable responses in carbon export to the increasing discharge.

Mercury and methylmercury dynamics in the hyporheic zone of an Oregon stream

USGS Publications Warehouse

Hinkle, Stephen R.; Bencala, Kenneth E.; Wentz, Dennis A.; Krabbenhoft, David P.

2014-01-01

The role of the hyporheic zone in mercury (Hg) cycling has received limited attention despite the biogeochemically active nature of this zone and, thus, its potential to influence Hg behavior in streams. An assessment of Hg geochemistry in the hyporheic zone of a coarse-grained island in the Coast Fork Willamette River in Oregon, USA, illustrates the spatially dynamic nature of this region of the stream channel for Hg mobilization and attenuation. Hyporheic flow through the island was evident from the water-table geometry and supported by hyporheic-zone chemistry distinct from that of the bounding groundwater system. Redox-indicator species changed abruptly along a transect through the hyporheic zone, indicating a biogeochemically reactive stream/hyporheic-zone continuum. Dissolved organic carbon (DOC), total Hg, and methylmercury (MeHg) concentrations increased in the upgradient portion of the hyporheic zone and decreased in the downgradient region. Total Hg (collected in 2002 and 2003) and MeHg (collected in 2003) were correlated with DOC in hyporheic-zone samples: r2=0.63 (total Hg-DOC, 2002), 0.73 (total Hg-DOC, 2003), and 0.94 (MeHg-DOC, 2003). Weaker Hg/DOC association in late summer 2002 than in early summer 2003 may reflect seasonal differences in DOC reactivity. Observed correlations between DOC and both total Hg and MeHg reflect the importance of DOC for Hg mobilization, transport, and fate in this hyporheic zone. Correlations with DOC provide a framework for conceptualizing and quantifying Hg and MeHg dynamics in this region of the stream channel, and provide a refined conceptual model of the role hyporheic zones may play in aquatic ecosystems.

Dissolved organic carbon fluxes in the Middle Atlantic Bight: An integrated approach based on satellite data and ocean model products

PubMed Central

Mannino, Antonio; Signorini, Sergio R.; Novak, Michael G.; Wilkin, John; Friedrichs, Marjorie A. M.; Najjar, Raymond G.

2017-01-01

Continental margins play an important role in global carbon cycle, accounting for 15–21% of the global marine primary production. Since carbon fluxes across continental margins from land to the open ocean are not well constrained, we undertook a study to develop satellite algorithms to retrieve dissolved organic carbon (DOC) and combined these satellite data with physical circulation model products to quantify the shelf boundary fluxes of DOC for the U.S. Middle Atlantic Bight (MAB). Satellite DOC was computed through seasonal relationships of DOC with colored dissolved organic matter absorption coefficients, which were derived from an extensive set of in situ measurements. The multiyear time series of satellite-derived DOC stocks (4.9 Teragrams C; Tg) shows that freshwater discharge influences the magnitude and seasonal variability of DOC on the continental shelf. For the 2010–2012 period studied, the average total estuarine export of DOC into the MAB shelf is 0.77 Tg C yr−1 (year). The integrated DOC tracer fluxes across the shelf boundaries are 12.1 Tg C yr−1 entering the MAB from the southwest alongshore boundary, 18.5 Tg C yr−1 entering the MAB from the northeast alongshore boundary, and 29.0 Tg C yr−1 flowing out of the MAB across the entire length of the 100 m isobath. The magnitude of the cross-shelf DOC flux is quite variable in time (monthly) and space (north to south). The highly dynamic exchange of water along the shelf boundaries regulates the DOC budget of the MAB at subseasonal time scales. PMID:29201582

A Global Assessment of Rain-Dissolved Organic Carbon

NASA Astrophysics Data System (ADS)

Safieddine, S.; Heald, C. L.

2017-12-01

Precipitation is the largest physical removal pathway of atmospheric organic carbon from the atmosphere. The removed carbon is transferred to the land and ocean in the form of dissolved organic carbon (DOC). Limited measurements have hindered efforts to characterize global DOC. In this poster presentation, we show the first simulated global DOC distribution based on a GEOS-Chem model simulation of the atmospheric reactive carbon budget. Over the ocean, simulated DOC concentrations are between 0.1 to 1 mgCL-1 with a total of 85 TgCyr-1 deposited. DOC concentrations are higher inland, ranging between 1 and 10 mgCL-1, producing a total of 188 TgCyr-1 terrestrial organic wet deposition. We compare the 2010 simulated DOC to a 30-year synthesis of available DOC measurements over different environments. Despite imperfect matching of observational and simulated time intervals, the model is able to reproduce much of the spatial variability of DOC (r= 0.63), with a low bias of 35%. We compare the global average carbon oxidation state (OSc) of both atmospheric and dissolved organic carbon, as a simple metric for describing the chemical composition of organics. In the global atmosphere reactive organic carbon (ROC) is dominated by hydrocarbons and ketones, and OSc, ranges from -1.8 to -0.6. In the dissolved form, formaldehyde, formic acid, primary and secondary semi-volatiles organic aerosol dominate the DOC concentrations. The increase in solubility upon oxidation leads to a global increase in OSc in rainwater with -0.6<=OSc <=0. This simulation provides new insight into the current model representation of the flow of atmospheric and rain-dissolved organic carbon, and new opportunities to use observations and simulations to understand the DOC reaching land and ocean.

Dissolved oxygen as an indicator of bioavailable dissolved organic carbon in groundwater.

PubMed

Chapelle, Francis H; Bradley, Paul M; McMahon, Peter B; Kaiser, Karl; Benner, Ron

2012-01-01

Concentrations of dissolved oxygen (DO) plotted vs. dissolved organic carbon (DOC) in groundwater samples taken from a coastal plain aquifer of South Carolina (SC) showed a statistically significant hyperbolic relationship. In contrast, DO-DOC plots of groundwater samples taken from the eastern San Joaquin Valley of California (CA) showed a random scatter. It was hypothesized that differences in the bioavailability of naturally occurring DOC might contribute to these observations. This hypothesis was examined by comparing nine different biochemical indicators of DOC bioavailability in groundwater sampled from these two systems. Concentrations of DOC, total hydrolysable neutral sugars (THNS), total hydrolysable amino acids (THAA), mole% glycine of THAA, initial bacterial cell counts, bacterial growth rates, and carbon dioxide production/consumption were greater in SC samples relative to CA samples. In contrast, the mole% glucose of THNS and the aromaticity (SUVA(254)) of DOC was greater in CA samples. Each of these indicator parameters were observed to change with depth in the SC system in a manner consistent with active biodegradation. These results are uniformly consistent with the hypothesis that the bioavailability of DOC is greater in SC relative to CA groundwater samples. This, in turn, suggests that the presence/absence of a hyperbolic DO-DOC relationship may be a qualitative indicator of relative DOC bioavailability in groundwater systems. Ground Water © 2011, National Ground Water Association. Published 2011. This article is a U.S. Government work and is in the public domain in the USA.

Wetlands receiving water treated with coagulants improve water quality by removing dissolved organic carbon and disinfection byproduct precursors.

PubMed

Hansen, Angela M; Kraus, Tamara E C; Bachand, Sandra M; Horwath, William R; Bachand, Philip A M

2018-05-01

Constructed wetlands are used worldwide to improve water quality while also providing critical wetland habitat. However, wetlands have the potential to negatively impact drinking water quality by exporting dissolved organic carbon (DOC) that upon disinfection can form disinfection byproducts (DBPs) like trihalomethanes (THMs) and haloacetic acids (HAAs). We used a replicated field-scale study located on organic rich soils in California's Sacramento-San Joaquin Delta to test whether constructed flow-through wetlands which receive water high in DOC that is treated with either iron- or aluminum-based coagulants can improve water quality with respect to DBP formation. Coagulation alone removed DOC (66-77%) and THM (67-70%) precursors, and was even more effective at removing HAA precursors (77-90%). Passage of water through the wetlands increased DOC concentrations (1.5-7.5mgL -1 ), particularly during the warmer summer months, thereby reversing some of the benefits from coagulant addition. Despite this addition, water exiting the wetlands treated with coagulants had lower DOC and DBP precursor concentrations relative to untreated source water. Benefits of the coagulation-wetland systems were greatest during the winter months (approx. 50-70% reduction in DOC and DBP precursor concentrations) when inflow water DOC concentrations were higher and wetland DOC production was lower. Optical properties suggest DOC in this system is predominantly comprised of high molecular weight, aromatic compounds, likely derived from degraded peat soils. Published by Elsevier B.V.

Experimental whole-lake increase of dissolved organic carbon concentration produces unexpected increase in crustacean zooplankton density

USGS Publications Warehouse

Kelly, Patrick T.; Craig, Nicola; Solomon, Christopher T.; Weidel, Brian C.; Zwart, Jacob A.; Jones, Stuart E.

2016-01-01

The observed pattern of lake browning, or increased terrestrial dissolved organic carbon (DOC) concentration, across the northern hemisphere has amplified the importance of understanding how consumer productivity varies with DOC concentration. Results from comparative studies suggest these increased DOC concentrations may reduce crustacean zooplankton productivity due to reductions in resource quality and volume of suitable habitat. Although these spatial comparisons provide an expectation for the response of zooplankton productivity as DOC concentration increases, we still have an incomplete understanding of how zooplankton respond to temporal increases in DOC concentration within a single system. As such, we used a whole-lake manipulation, in which DOC concentration was increased from 8 to 11 mg L−1 in one basin of a manipulated lake, to test the hypothesis that crustacean zooplankton production should subsequently decrease. In contrast to the spatially derived expectation of sharp DOC-mediated decline, we observed a small increase in zooplankton densities in response to our experimental increase in DOC concentration of the treatment basin. This was due to significant increases in gross primary production and resource quality (lower seston carbon-to-phosphorus ratio; C:P). These results demonstrate that temporal changes in lake characteristics due to increased DOC may impact zooplankton in ways that differ from those observed in spatial surveys. We also identified significant interannual variability across our study region, which highlights potential difficulty in detecting temporal responses of organism abundances to gradual environmental change (e.g., browning).

Biochar feedstock and pyrolysis temperature effects on leachate: DOC characteristics and nitrate losses from a Brazilian Cerrado Arenosol mixed with agricultural waste biochars.

PubMed

Speratti, Alicia B; Johnson, Mark S; Sousa, Heiriane Martins; Dalmagro, Higo J; Couto, Eduardo Guimarães

2018-04-01

Dissolved organic carbon (DOC) leached from Brazilian Cerrado Arenosols can lead to carbon (C) losses and lower soil fertility, while excessive nutrient, e.g. nitrate (NO 3 - ), leaching can potentially cause water contamination. As biochar has been shown to stabilize C and retain soil nutrients, a greenhouse experiment was conducted to test different biochars' contributions to DOC and NO 3 - leaching from a sandy soil. Biochars were made from four local agricultural waste feedstocks (cotton residue, swine manure, eucalyptus sawmill residue, sugarcane filtercake) pyrolysed at 400, 500 and 600 °C. Biochar was mixed with soil at 5% weight in pots and maize seeds planted. Leachate was collected weekly for six weeks and analyzed for DOC and NO 3 - concentrations, while fluorescence spectroscopy with parallel factor analysis (PARAFAC) was used to interpret DOC characteristics. Cotton and swine manure biochar treatments had higher DOC and NO 3 - losses than eucalyptus biochar, filtercake biochar, and control treatments. Cotton and swine manure biochar treatments at high temperatures lost mostly terrestrial, humified DOC, while swine manure, filtercake, and eucalyptus biochars at low temperatures lost mostly labile, microbially-derived DOC. Through the practical use of fluorescence spectroscopy, our study identified filtercake and eucalyptus biochars as most promising for retaining DOC and NO 3 - in a Cerrado Arenosol, potentially reducing stable C and nutrient losses. Copyright © 2018 Elsevier Ltd. All rights reserved.

Improved automation of dissolved organic carbon sampling for organic-rich surface waters.

PubMed

Grayson, Richard P; Holden, Joseph

2016-02-01

In-situ UV-Vis spectrophotometers offer the potential for improved estimates of dissolved organic carbon (DOC) fluxes for organic-rich systems such as peatlands because they are able to sample and log DOC proxies automatically through time at low cost. In turn, this could enable improved total carbon budget estimates for peatlands. The ability of such instruments to accurately measure DOC depends on a number of factors, not least of which is how absorbance measurements relate to DOC and the environmental conditions. Here we test the ability of a S::can Spectro::lyser™ for measuring DOC in peatland streams with routinely high DOC concentrations. Through analysis of the spectral response data collected by the instrument we have been able to accurately measure DOC up to 66 mg L(-1), which is more than double the original upper calibration limit for this particular instrument. A linear regression modelling approach resulted in an accuracy >95%. The greatest accuracy was achieved when absorbance values for several different wavelengths were used at the same time in the model. However, an accuracy >90% was achieved using absorbance values for a single wavelength to predict DOC concentration. Our calculations indicated that, for organic-rich systems, in-situ measurement with a scanning spectrophotometer can improve fluvial DOC flux estimates by 6 to 8% compared with traditional sampling methods. Thus, our techniques pave the way for improved long-term carbon budget calculations from organic-rich systems such as peatlands. Copyright © 2015 Elsevier B.V. All rights reserved.

Linking pulses of atmospheric deposition to DOC release in an upland peat-covered catchment

NASA Astrophysics Data System (ADS)

Worrall, F.; Burt, T. P.; Adamson, J. K.

2008-12-01

Changes in atmospheric deposition have been proposed as one possible explanation of the widespread increase in DOC concentration observed in many Northern Hemisphere catchments. This study uses detailed, long-term, monthly monitoring records of pH, conductivity SO4, and DOC in precipitation, soil water, and runoff chemistry from an upland peat-covered catchment in northern England. By deriving impulse transfer functions this study explores whether changes in deposition lead to significant changes in the occurrence of each component in the soil and runoff water; especially significant changes in DOC. The study shows that (1) impulses in the deposition of acidity have no significant effect upon pH or DOC in soil water or runoff. (2) DOC in soil water and runoff is responsive to impulses in SO4 and conductivity, but only when those impulses are changes in soil water chemistry and not when they are in atmospheric deposition. (3) The effects of changes in SO4 and/or conductivity can easily be overemphasized if memory effects are not accounted for, and their effect is limited to only 1 or 2 months after a severe drought. This study can support the view that changes in ionic strength can result in changes in DOC concentration in soil water or runoff, but the system studied is unresponsive to changes in atmospheric deposition. Impulses in soil water SO4 do not lead to increases in DOC concentrations, and so this mechanism does not provide an explanation for DOC increases.

Towards a universal microbial inoculum for dissolved organic carbon degradation experiments

NASA Astrophysics Data System (ADS)

Pastor, Ada; Catalán, Núria; Gutiérrez, Carmen; Nagar, Nupur; Casas-Ruiz, Joan P.; Obrador, Biel; von Schiller, Daniel; Sabater, Sergi; Petrovic, Mira; Borrego, Carles M.; Marcé, Rafael

2017-04-01

Dissolved organic carbon (DOC) is the largest biologically available pool of organic carbon in aquatic ecosystems and its degradation along the land-to-ocean continuum has implications for carbon cycling from local to global scales. DOC biodegradability is usually assessed by incubating filtered water inoculated with native microbial assemblages in the laboratory. However, the use of a native inoculum from several freshwaters, without having a microbial-tailored design, hampers our ability to tease apart the relative contribution of the factors driving DOC degradation from the effects of local microbial communities. The use of a standard microbial inoculum would allow researchers to disentangle the drivers of DOC degradation from the metabolic capabilities of microbial communities operating in situ. With this purpose, we designed a bacterial inoculum to be used in experiments of DOC degradation in freshwater habitats. The inoculum is composed of six bacterial strains that easily grow under laboratory conditions, possess a versatile metabolism and are able to grow under both aerobic and anaerobic conditions. The mixed inoculum showed higher DOC degradation rates than those from their isolated bacterial components and the consumption of organic substrates was consistently replicated. Moreover, DOC degradation rates obtained using the designed inoculum were responsive across a wide range of natural water types differing in DOC concentration and composition. Overall, our results show the potential of the designed inoculum as a tool to discriminate between the effects of environmental drivers and intrinsic properties of DOC on degradation dynamics.

Multi-facetted Metadata - Describing datasets with different metadata schemas at the same time

NASA Astrophysics Data System (ADS)

Ulbricht, Damian; Klump, Jens; Bertelmann, Roland

2013-04-01

Inspired by the wish to re-use research data a lot of work is done to bring data systems of the earth sciences together. Discovery metadata is disseminated to data portals to allow building of customized indexes of catalogued dataset items. Data that were once acquired in the context of a scientific project are open for reappraisal and can now be used by scientists that were not part of the original research team. To make data re-use easier, measurement methods and measurement parameters must be documented in an application metadata schema and described in a written publication. Linking datasets to publications - as DataCite [1] does - requires again a specific metadata schema and every new use context of the measured data may require yet another metadata schema sharing only a subset of information with the meta information already present. To cope with the problem of metadata schema diversity in our common data repository at GFZ Potsdam we established a solution to store file-based research data and describe these with an arbitrary number of metadata schemas. Core component of the data repository is an eSciDoc infrastructure that provides versioned container objects, called eSciDoc [2] "items". The eSciDoc content model allows assigning files to "items" and adding any number of metadata records to these "items". The eSciDoc items can be submitted, revised, and finally published, which makes the data and metadata available through the internet worldwide. GFZ Potsdam uses eSciDoc to support its scientific publishing workflow, including mechanisms for data review in peer review processes by providing temporary web links for external reviewers that do not have credentials to access the data. Based on the eSciDoc API, panMetaDocs [3] provides a web portal for data management in research projects. PanMetaDocs, which is based on panMetaWorks [4], is a PHP based web application that allows to describe data with any XML-based schema. It uses the eSciDoc infrastructures REST-interface to store versioned dataset files and metadata in a XML-format. The software is able to administrate more than one eSciDoc metadata record per item and thus allows the description of a dataset according to its context. The metadata fields can be filled with static or dynamic content to reduce the number of fields that require manual entries to a minimum and, at the same time, make use of contextual information available in a project setting. Access rights can be adjusted to set visibility of datasets to the required degree of openness. Metadata from separate instances of panMetaDocs can be syndicated to portals through RSS and OAI-PMH interfaces. The application architecture presented here allows storing file-based datasets and describe these datasets with any number of metadata schemas, depending on the intended use case. Data and metadata are stored in the same entity (eSciDoc items) and are managed by a software tool through the eSciDoc REST interface - in this case the application is panMetaDocs. Other software may re-use the produced items and modify the appropriate metadata records by accessing the web API of the eSciDoc data infrastructure. For presentation of the datasets in a web browser we are not bound to panMetaDocs. This is done by stylesheet transformation of the eSciDoc-item. [1] http://www.datacite.org [2] http://www.escidoc.org , eSciDoc, FIZ Karlruhe, Germany [3] http://panmetadocs.sf.net , panMetaDocs, GFZ Potsdam, Germany [4] http://metaworks.pangaea.de , panMetaWorks, Dr. R. Huber, MARUM, Univ. Bremen, Germany

ISER - Electric Disturbance Events (OE-417)

Science.gov Websites

Training. (PDF 1.1 MB) (DOC 1 MB) OE-417 Form and Instructions Survey Form (PDF 136 KB) ( DOC 104 KB) Form Instructions (PDF 383 KB) (DOC 104 KB) Annual Summaries Current Year Summary (PDF 71 KB) (XLS 43 KB) Archives -417 Survey Form E-Filing System Training. (PDF 1.1 MB) (DOC 1 MB) OE-417 FORM AND INSTRUCTIONS Survey

Estimating grassland curing with remotely sensed data

NASA Astrophysics Data System (ADS)

Chaivaranont, Wasin; Evans, Jason P.; Liu, Yi Y.; Sharples, Jason J.

2018-06-01

Wildfire can become a catastrophic natural hazard, especially during dry summer seasons in Australia. Severity is influenced by various meteorological, geographical, and fuel characteristics. Modified Mark 4 McArthur's Grassland Fire Danger Index (GFDI) is a commonly used approach to determine the fire danger level in grassland ecosystems. The degree of curing (DOC, i.e. proportion of dead material) of the grass is one key ingredient in determining the fire danger. It is difficult to collect accurate DOC information in the field, and therefore ground-observed measurements are rather limited. In this study, we explore the possibility of whether adding satellite-observed data responding to vegetation water content (vegetation optical depth, VOD) will improve DOC prediction when compared with the existing satellite-observed data responding to DOC prediction models based on vegetation greenness (normalised difference vegetation index, NDVI). First, statistically significant relationships are established between selected ground-observed DOC and satellite-observed vegetation datasets (NDVI and VOD) with an r2 up to 0.67. DOC levels estimated using satellite observations were then evaluated using field measurements with an r2 of 0.44 to 0.55. Results suggest that VOD-based DOC estimation can reasonably reproduce ground-based observations in space and time and is comparable to the existing NDVI-based DOC estimation models.

Isolation, purification and analysis of dissolved organic carbon from Gohagoda uncontrolled open dumpsite leachate, Sri Lanka.

PubMed

Vithanage, Meththika; Wijesekara, Hasintha; Mayakaduwa, S S

2017-07-01

Extract and analysis of the Dissolved Organic Carbon (DOC) fractions were analyzed from the leachate of an uncontrolled dumpsite at Gohagoda, Sri Lanka. DOC fractions, humic acid (HA), fulvic acid (FA) and the hydrophilic (Hyd) fractions were isolated and purified with the resin techniques. Spectroscopic techniques and elemental analysis were performed to characterize DOCs. Maximum TOC and DOC values recorded were 56,955 and 28,493 mg/L, respectively. Based on the total amount of DOC fractionation, Hyd dominated accounting for ∼60%, and HA and FA constituted ∼22% and ∼17%, respectively, exhibiting the mature phase of the dumpsite. The elemental analysis of DOCs revealed carbon variation following HA > FA > Hyd, while hydrogen and nitrogen were similar in each fraction. The N/C ratio for HA was recorded as 0.18, following a similar trend in old dumpsite leachate elsewhere. The O/C ratios for HA and FA were recorded higher as much as 1.0 and 9.3, respectively, indicating high degree of carbon mineralization in the leachates. High content of carboxylic, phenolic and lactone groups in all DOCs was observed disclosing their potential for toxic substances transportation. The results strongly suggest the risk associated with DOCs in dumpsite leachate to the aquatic and terrestrial environment.

Concentration, sources, and flux of dissolved organic carbon of precipitation at Lhasa city, the Tibetan Plateau.

PubMed

Li, Chaoliu; Yan, Fangping; Kang, Shichang; Chen, Pengfei; Qu, Bin; Hu, Zhaofu; Sillanpää, Mika

2016-07-01

Dissolved organic carbon (DOC) plays an important role in the climate system, but few data are available on the Tibetan Plateau (TP). In this study, 89 precipitation samples were collected at Lhasa, the largest city of southern Tibet, from March to December 2013. The average concentration and wet deposition flux of DOC was 1.10 mg C L(-1) and 0.63 g C m(-2) year(-1), respectively. Seasonally, low DOC concentration and high flux appeared during the monsoon period, which were in line with heavy precipitation amount, reflecting dilution effect of precipitation for the DOC. Compared to other regions, the values of Lhasa were lower than those of large cities (e.g., Beijing and Seoul) mainly because of less air pollution of Lhasa. The principal component analysis (PCA) of DOC and ions (Ca(2+), Mg(2+), Na(+), K(+), NH4 (+), Cl(-), NO3 (-), and SO4 (2-)) showed that DOC of Lhasa was derived mainly from the natural sources, followed by anthropogenic burning activities. Furthermore, △(14)C value of DOC indicated that fossil fuel combustion contributed around 28 % of the rainwater DOC of Lhasa, indicating that the atmosphere of Lhasa has been influenced by emission from fossil fuel combustion or high-temperature industrial processes.

Transcriptional Profile during Deoxycholate-Induced Sporulation in a Clostridium perfringens Isolate Causing Foodborne Illness

PubMed Central

Okuzaki, Daisuke; Kuwana, Ritsuko; Takamatsu, Hiromu; Fujita, Masaya; Sarker, Mahfuzur R.; Miyake, Masami

2016-01-01

ABSTRACT Clostridium perfringens type A is a common source of foodborne illness (FBI) in humans. Vegetative cells sporulate in the small intestinal tract and produce the major pathogenic factor C. perfringens enterotoxin. Although sporulation plays a critical role in the pathogenesis of FBI, the mechanisms inducing sporulation remain unclear. Bile salts were shown previously to induce sporulation, and we confirmed deoxycholate (DCA)-induced sporulation in C. perfringens strain NCTC8239 cocultured with human intestinal epithelial Caco-2 cells. In the present study, we performed transcriptome analyses of strain NCTC8239 in order to elucidate the mechanism underlying DCA-induced sporulation. Of the 2,761 genes analyzed, 333 were up- or downregulated during DCA-induced sporulation and included genes for cell division, nutrient metabolism, signal transduction, and defense mechanisms. In contrast, the virulence-associated transcriptional regulators (the VirR/VirS system, the agr system, codY, and abrB) were not activated by DCA. DCA markedly increased the expression of signaling molecules controlled by Spo0A, the master regulator of the sporulation process, whereas the expression of spo0A itself was not altered in the presence or absence of DCA. The phosphorylation of Spo0A was enhanced in the presence of DCA. Collectively, these results demonstrated that DCA induced sporulation, at least partially, by facilitating the phosphorylation of Spo0A and activating Spo0A-regulated genes in strain NCTC8239 while altering the expression of various genes. IMPORTANCE Disease caused by Clostridium perfringens type A consistently ranks among the most common bacterial foodborne illnesses in humans in developed countries. The sporulation of C. perfringens in the small intestinal tract is a key event for its pathogenesis, but the factors and underlying mechanisms by which C. perfringens sporulates in vivo currently remain unclear. Bile salts, major components of bile, which is secreted from the liver for the emulsification of lipids, were shown to induce sporulation. However, the mechanisms underlying bile salt-induced sporulation have not yet been clarified. In the present study, we demonstrate that deoxycholate (one of the bile salts) induces sporulation by facilitating the phosphorylation of Spo0A and activating Spo0A-regulated genes using a transcriptome analysis. Thus, this study enhances our understanding of the mechanisms underlying sporulation, particularly that of bile salt-induced sporulation, in C. perfringens. PMID:26969700

ISACS-DOC: Monitoring and Diagnostic System for AKARI and HINODE

NASA Astrophysics Data System (ADS)

Mizutani, Mitsue; Hirose, Toshinori; Takaki, Ryoji; Honda, Hideyuki

ISACS-DOC (Intelligent Satellite Control Software-DOCtor), which is an automatic monitoring and diagnostic system for scientific satellites or spacecraft, aims to rapidly and accurately capture important changes and sign of anomaly during daily satellite operations. After three systems for deep space missions, the new generation of ISACS-DOC with a higher speed processing performance had been developed for the satellites in earth orbit, AKARI and HINODE. This paper reports on the newest ISACS-DOC about enhanced functions, operating status, and an approach to create standards to build and keep up the knowledge data base. Continuous enhancements through the actual operations are the advantage of ISACS-DOC.

The first insight into the metabolite profiling of grapes from three Vitis vinifera L. cultivars of two controlled appellation (DOC) regions.

PubMed

Teixeira, António; Martins, Viviana; Noronha, Henrique; Eiras-Dias, José; Gerós, Hernâni

2014-03-10

The characterization of the metabolites accumulated in the grapes of specific cultivars grown in different climates is of particular importance for viticulturists and enologists. In the present study, the metabolite profiling of grapes from the cultivars, Alvarinho, Arinto and Padeiro de Basto, of two Portuguese Controlled Denomination of Origin (DOC) regions (Vinho Verde and Lisboa) was investigated by gas chromatography-coupled time-of-flight mass spectrometry (GC-TOF-MS) and an amino acid analyzer. Primary metabolites, including sugars, organic acids and amino acids, and some secondary metabolites were identified. Tartaric and malic acids and free amino acids accumulated more in grapes from vines of the DOC region of Vinho Verde than DOC Lisboa, but a principal component analysis (PCA) plot showed that besides the DOC region, the grape cultivar also accounted for the variance in the relative abundance of metabolites. Grapes from the cultivar, Alvarinho, were particularly rich in malic acid and tartaric acids in both DOC regions, but sucrose accumulated more in the DOC region of Vinho Verde.

The First Insight into the Metabolite Profiling of Grapes from Three Vitis vinifera L. Cultivars of Two Controlled Appellation (DOC) Regions

PubMed Central

Teixeira, António; Martins, Viviana; Noronha, Henrique; Eiras-Dias, José; Gerós, Hernâni

2014-01-01

The characterization of the metabolites accumulated in the grapes of specific cultivars grown in different climates is of particular importance for viticulturists and enologists. In the present study, the metabolite profiling of grapes from the cultivars, Alvarinho, Arinto and Padeiro de Basto, of two Portuguese Controlled Denomination of Origin (DOC) regions (Vinho Verde and Lisboa) was investigated by gas chromatography-coupled time-of-flight mass spectrometry (GC-TOF-MS) and an amino acid analyzer. Primary metabolites, including sugars, organic acids and amino acids, and some secondary metabolites were identified. Tartaric and malic acids and free amino acids accumulated more in grapes from vines of the DOC region of Vinho Verde than DOC Lisboa, but a principal component analysis (PCA) plot showed that besides the DOC region, the grape cultivar also accounted for the variance in the relative abundance of metabolites. Grapes from the cultivar, Alvarinho, were particularly rich in malic acid and tartaric acids in both DOC regions, but sucrose accumulated more in the DOC region of Vinho Verde. PMID:24619195

DOC quantity and quality in northeastern USA catchments

NASA Astrophysics Data System (ADS)

Shanley, J. B.; Sebestyen, S. D.; Aiken, G.; Pellerin, B. A.

2011-12-01

At the Sleepers River Research Watershed in Vermont we have studied interactions of dissolved organic carbon (DOC) cycling and hydrological processes for nearly 20 years to determine how and when DOC is transported through the landscape. Stream DOC concentration in this cool temperate forested catchment varies from ~1 to ~15 mg L-1 and is transport-limited; concentrations increase with increasing flow, even under the wettest conditions, suggesting shifting but non-depletable sources. Specific UV absorbance (SUVA) also increases consistently with flow. Source strength does vary seasonally, however, evidenced by higher DOC for a given flow during autumn leaf fall relative to spring snowmelt. Recent high-frequency optical sensor measurements have revealed fine-scale structure in the temporal DOC pattern not possible from discrete sampling. We observe a consistent counterclockwise hysteresis and diurnal cycles with seasonally variable amplitude. In this presentation we infer DOC sources and processes through analysis of antecedent moisture conditions and concurrent variations in nitrate, dissolved organic nitrogen, and SUVA. With sensors and sampling in place at several other research catchments, we are investigating the similarity of patterns across the northeastern USA.

Sustainable brooder for supporting local chicken in North Sumatera Province, Indonesia

NASA Astrophysics Data System (ADS)

Ginting, N.; Hidayat, R.

2018-02-01

Demand for local chicken has lasted for ages in Sumatera Utara Province, Indonesia. Demand is higher than supply because local chicken has low productivity which caused by several factors, for example heater or brooder for day old chicken (DOC). People who live in villages where mostly local chicken are raised have difficulty in serving brooder as electricity is expensive. In Biological Laboratory, Animal Production Programme Study, University of Sumatera Utara, a study has been conducted from August until November 2016. The objective of this study is to investigate sustainable brooder for local chicken. A study of 300 local DOC with designs: T1) local DOC + electric lamp brooder, T2) local DOC + biogas lamp brooder, T3) local DOC + propane lamp brooder has conducted. The key parameters measured were temperature stability, DOC spread, body weight gain, and mortality. Designs T1, T2 and T3 were almost equal in temperature stability, DOC spread, body weight gain and mortality while T2 was superior as it was environmentally friendly. A recommendation for local people to use biogas brooder instead of electric or LPG brooder.

Secondary Psychometric Examination of the Dimensional Obsessive-Compulsive Scale: Classical Testing, Item Response Theory, and Differential Item Functioning.

PubMed

Thibodeau, Michel A; Leonard, Rachel C; Abramowitz, Jonathan S; Riemann, Bradley C

2015-12-01

The Dimensional Obsessive-Compulsive Scale (DOCS) is a promising measure of obsessive-compulsive disorder (OCD) symptoms but has received minimal psychometric attention. We evaluated the utility and reliability of DOCS scores. The study included 832 students and 300 patients with OCD. Confirmatory factor analysis supported the originally proposed four-factor structure. DOCS total and subscale scores exhibited good to excellent internal consistency in both samples (α = .82 to α = .96). Patient DOCS total scores reduced substantially during treatment (t = 16.01, d = 1.02). DOCS total scores discriminated between students and patients (sensitivity = 0.76, 1 - specificity = 0.23). The measure did not exhibit gender-based differential item functioning as tested by Mantel-Haenszel chi-square tests. Expected response options for each item were plotted as a function of item response theory and demonstrated that DOCS scores incrementally discriminate OCD symptoms ranging from low to extremely high severity. Incremental differences in DOCS scores appear to represent unbiased and reliable differences in true OCD symptom severity. © The Author(s) 2014.

The sensitivity of peat soil and peatland vegetation to drought: release of dissolved organic carbon (DOC) on rewetting

NASA Astrophysics Data System (ADS)

Ritson, Jonathan; Graham, Nigel; Templeton, Michael; Freeman, Christopher; Clark, Joanna

2015-04-01

Organic rich peat soils are a major store of carbon worldwide. Their existence is predicated on high year-round water tables which create an anoxic environment, thus limiting decay, and also to the recalcitrance of plant litter (dead plant material) commonly found in peatland areas. Climate change threatens the stability of peat soils by altering the biogeochemical cycles which control plant decay, lowering water tables so that oxic degradation can occur and by changing habitat niches such that less recalcitrant species can thrive in peatlands. One of the major fluxes of carbon from peatlands is through dissolved organic carbon (DOC) in surface waters. As peatland areas in the UK are often used as source waters for drinking water supply this presents a problem to water utilities as DOC must be effectively removed to limit colour, odour and the formation of potentially carcinogenic by-products on disinfection. Changes in catchment vegetation may occur due to climate change, nutrient deposition and changing bioclimatic envelopes. How different peatland vegetation contribute to DOC flux and how this may change in the future is therefore of interest. A six week laboratory simulation was performed on typical peatland litter (Sphagnum spp., Calluna vulgaris, Molinea caerulea, Juncus effusus) and a peat soil collected from Exmoor National Park, UK. The simulation monitored DOC flux from the decaying litter/soil and considered the impact of different drought severities using the 50th, 25th, 10th and 5th percentiles of the mean July/August monthly rainfall for Exmoor. On rewetting following the drought, all sources produced significantly different amounts of DOC (Tukey HSD p<0.05) in the order Molinia>Juncus>Calluna>Sphagnum>peat. The source also had a significant (ANOVA p<0.001) effect on coagulation removal efficiency, a typical method of removing DOC during drinking water treatment, with Juncus DOC proving the easiest to remove whilst Sphagnum DOC was the most difficult. Sphagnum DOC had the lowest ratio of humic-like to protein-like fluorescence, which is indicative of DOC which is poorly removed by coagulation. An interactive effect was noted between DOC source and the drought treatment which was explored further using a one-way ANOVA with a Holm-Šidák correction. This suggested peat will produce significantly more DOC when affected by drought (p=0.010), possibly explained by increased oxygenation engaging the 'enzymatic latch' mechanism. A similar analysis was performed on the interaction between drought and DOC source for the specific UV absorbance at 254nm (SUVA) value (a measure of aromaticity). This suggested that Molinea caerulea produces DOC of significantly (p=0.001) higher aromaticity following periods of drought. Comparisons between drought and DOC source factors suggest the source in more important than climatic conditions of decay which is consistent with our previously published findings. These results have implications for marginal peatlands which may be at risk from increased water table drawdown in the future as climate changes and where Molinea caerulea, typically a fen species, is encroaching on bog communities.

Data-based mechanistic modeling of dissolved organic carbon load through storms using continuous 15-minute resolution observations within UK upland watersheds

NASA Astrophysics Data System (ADS)

Jones, T.; Chappell, N. A.

2013-12-01

Few watershed modeling studies have addressed DOC dynamics through storm hydrographs (notable exceptions include Boyer et al., 1997 Hydrol Process; Jutras et al., 2011 Ecol Model; Xu et al., 2012 Water Resour Res). In part this has been a consequence of an incomplete understanding of the biogeochemical processes leading to DOC export to streams (Neff & Asner, 2001, Ecosystems) & an insufficient frequency of DOC monitoring to capture sometimes complex time-varying relationships between DOC & storm hydrographs (Kirchner et al., 2004, Hydrol Process). We present the results of a new & ongoing UK study that integrates two components - 1/ New observations of DOC concentrations (& derived load) continuously monitored at 15 minute intervals through multiple seasons for replicated watersheds; & 2/ A dynamic modeling technique that is able to quantify storage-decay effects, plus hysteretic, nonlinear, lagged & non-stationary relationships between DOC & controlling variables (including rainfall, streamflow, temperature & specific biogeochemical variables e.g., pH, nitrate). DOC concentration is being monitored continuously using the latest generation of UV spectrophotometers (i.e. S::CAN spectro::lysers) with in situ calibrations to laboratory analyzed DOC. The controlling variables are recorded simultaneously at the same stream stations. The watersheds selected for study are among the most intensively studied basins in the UK uplands, namely the Plynlimon & Llyn Brianne experimental basins. All contain areas of organic soils, with three having improved grasslands & three conifer afforested. The dynamic response characteristics (DRCs) that describe detailed DOC behaviour through sequences of storms are simulated using the latest identification routines for continuous time transfer function (CT-TF) models within the Matlab-based CAPTAIN toolbox (some incorporating nonlinear components). To our knowledge this is the first application of CT-TFs to modelling DOC processes. Furthermore this allows a data-based mechanistic (DBM) modelling philosophy to be followed where no assumptions about processes are defined a priori (given that dominant processes are often not known before analysis) & where the information contained in the time-series is used to identify multiple structures of models that are statistically robust. Within the final stage of DBM, biogeochemical & hydrological processes are interpreted from those models that are observable from the available stream time-series. We show that this approach can simulate the key features of DOC dynamics within & between storms & that some of the resultant response characteristics change with varying DOC processes in different seasons. Through the use of MISO (multiple-input single-output) models we demonstrate the relative importance of different variables (e.g., rainfall, temperature) in controlling DOC responses. The contrasting behaviour of the six experimental catchments is also reflected in differing response characteristics. These characteristics are shown to contribute to understanding of basin-integrated DOC export processes & to the ecosystem service impacts of DOC & color on commercial water treatment within the surrounding water supply basins.

Deoxycholic acid and selenium metabolite methylselenol exert common and distinct effects on cell cycle, apoptosis, and MAP kinase pathway in HCT116 human colon cancer cells.

PubMed

Zeng, Huawei; Botnen, James H; Briske-Anderson, Mary

2010-01-01

The cell growth inhibition induced by bile acid deoxycholic acid (DCA) may cause compensatory hyperproliferation of colonic epithelial cells and consequently increase colon cancer risk. On the other hand, there is increasing evidence for the efficacy of certain forms of selenium (Se) as anticancer nutrients. Methylselenol has been hypothesized to be a critical Se metabolite for anticancer activity in vivo. In this study, we demonstrated that both DCA (75-300 micromol/l) and submicromolar methylselenol inhibited colon cancer cell proliferation by up to 64% and 63%, respectively. In addition, DCA and methylselenol each increased colon cancer cell apoptosis rate by up to twofold. Cell cycle analyses revealed that DCA induced an increase in only the G1 fraction with a concomitant drop in G2 and S-phase; in contrast, methylselenol led to an increase in the G1 and G2 fractions with a concomitant drop only in the S-phase. Although both DCA and methylselenol significantly promoted apoptosis and inhibited cell growth, examination of mitogen-activated protein kinase (MAPK) pathway activation showed that DCA, but not methylselenol, induced SAPK/JNK1/2, p38 MAPK, ERK1/2 activation. Thus, our data provide, for the first time, the molecular basis for opposite effects of methylselenol and DCA on colon tumorigenesis.

Deoxycholic acid modulates cell death signaling through changes in mitochondrial membrane properties[S

PubMed Central

Sousa, Tânia; Castro, Rui E.; Pinto, Sandra N.; Coutinho, Ana; Lucas, Susana D.; Moreira, Rui; Rodrigues, Cecília M. P.; Prieto, Manuel; Fernandes, Fábio

2015-01-01

Cytotoxic bile acids, such as deoxycholic acid (DCA), are responsible for hepatocyte cell death during intrahepatic cholestasis. The mechanisms responsible for this effect are unclear, and recent studies conflict, pointing to either a modulation of plasma membrane structure or mitochondrial-mediated toxicity through perturbation of mitochondrial outer membrane (MOM) properties. We conducted a comprehensive comparative study of the impact of cytotoxic and cytoprotective bile acids on the membrane structure of different cellular compartments. We show that DCA increases the plasma membrane fluidity of hepatocytes to a minor extent, and that this effect is not correlated with the incidence of apoptosis. Additionally, plasma membrane fluidity recovers to normal values over time suggesting the presence of cellular compensatory mechanisms for this perturbation. Colocalization experiments in living cells confirmed the presence of bile acids within mitochondrial membranes. Experiments with active isolated mitochondria revealed that physiologically active concentrations of DCA change MOM order in a concentration- and time-dependent manner, and that these changes preceded the mitochondrial permeability transition. Importantly, these effects are not observed on liposomes mimicking MOM lipid composition, suggesting that DCA apoptotic activity depends on features of mitochondrial membranes that are absent in protein-free mimetic liposomes, such as the double-membrane structure, lipid asymmetry, or mitochondrial protein environment. In contrast, the mechanism of action of cytoprotective bile acids is likely not associated with changes in cellular membrane structure. PMID:26351365

Prevalence of intestinal parasites and bacteria among food handlers in a tertiary care hospital

PubMed Central

Zaglool, D. A.; Khodari, Y. A.; Othman, R. A. M.; Farooq, M. U.

2011-01-01

Objectives: The aim of this work is to determine the prevalence of intestinal parasites and bacteria among the food handlers. Materials and Methods: Two hundred food-handlers were subjected to a cross-sectional study working in the kitchen of a tertiary care hospital, i.e., Alnoor Specialist Hospital, Makkah, Saudi Arabia from February 2 to 27, 2009. The stool samples were examined for intestinal parasites following direct microscopic examination, formol ether concentration (Ritchie), and staining with modified acid fast staining techniques. For enteropathogenic bacteria samples were inoculated onto MacConkey's agar, deoxycholate citrate agar, xylose lysine deoxycholate agar as per the World Health Organization protocol. Fingernail materials were examined microscopically for enteropathogenic bacteria and parasites. Results: The majority (80%) of the food-handlers were young adults aged from 22 to 42 years. No intestinal parasites were detected from fingernail contents. Forty six (23%) stool specimens were positive for intestinal para¬sites. Giardia lamblia 18 (9%) was most frequent among the 10 different types of detected intestinal parasites followed by Entamoeba histolytica 9 (4.5%). No pathogenic bacteria were detected in all stool samples, whereas finger nails showed isolation of microorganisms as coagulase-negative staphylococci 79 (39.5%), followed by Staphylococcus aureus 35 (17.5%). Conclusion: The findings emphasized the importance of food handlers as potential sources of infections and suggested health institutions for appropriate hygienic and sanitary control measures. PMID:22529512

Re-evaluation of colorimetric Cl- data from natural waters with DOC

USGS Publications Warehouse

Norton, S.A.; Handlet, M.J.; Kahl, J.S.; Peters, N.E.

1996-01-01

Colorimetric Cl- data from natural solutions that contain dissolved organic carbon (DOC) may be biased high. We evaluated aquatic Cl- concentrations in ecosystem compartments at the Bear Brook Watershed, Maine, and from lakes in Maine, using ion chromatography and colorimetry. DOC imparts a positive interference on colorimetric Cl- results proportional to DOC concentrations at approximately 0.8 ??eq Cl-/L per mg DOC/L. The interference is not a function of Cl- concentration. The resulting bias in concentrations of Cl- may be 50% or more of typical environmental values for Cl- in areas remote from atmospheric deposition of marine aerosols. Such biased data in the literature appear to have led to spurious conclusions about recycling of Cl- by forests, the usefulness of Cl- as a conservative tracer in watershed studies, and calculations of elemental budgets, ion balance, charge density of DOC, and dry deposition factors.

Modelling hydrological processes and dissolved organic carbon dynamics in a rehabilitated Sphagnum-dominated peatland

NASA Astrophysics Data System (ADS)

Bernard-Jannin, Léonard; Binet, Stéphane; Gogo, Sébastien; Leroy, Fabien; Perdereau, Laurent; Laggoun-Défarge, Fatima

2017-04-01

Sphagnum-dominated peatlands represent a global major stock of carbon (C). Dissolved organic carbon (DOC) exports through runoff and leaching could reduce their potential C sink function and impact downstream water quality. DOC production in peatlands is strongly controlled by the hydrology, especially water table depth (WTD). Therefore, disturbances such as drainage can lead to increase DOC exports by lowering the WTD. Hydrological restoration (e.g. rewetting) can be undertaken to restore peatland functioning with an impact on DOC exports. The objective of this study is to assess the impact of drainage and rewetting on hydrological processes and their interactions with DOC dynamics in a Sphagnum dominated peatland. A hydrological model has been applied to a drained peatland (La Guette, France) which experienced a rewetting action on February 2014 and where WTD has been recorded in four piezometers at a 15 min time step since 2009. In addition, DOC concentrations in the peatland have been measured 6 times a year since 2014. The hydrological model is a WTD dependent reservoir model composed by two reservoirs representing the micro and macro porosity of the peatland (Binet et al., 2013). A DOC production module in both reservoirs was implemented based on temperature and WTD. The model was calibrated against WTD and DOC concentrations for each piezometer. The results show that the WTD in the study area is strongly affected by local meteorological conditions that could hide the effect of the rewetting action. The preliminary results evidenced that an additional source of water, identified as groundwater supply originating from the surrounding sandy layer aquifer, is necessary to maintain the water balance, especially during wet years (NS>0.8). Finally, the DOC module was able to describe DOC concentrations measured in the peatland and could be used to assess the impact of rewetting on DOC dynamics at different locations and to identify the factors of control of DOC exports at the peatland scale before and after the restoration. This simple conceptual model requires few data to operate. Its application on different sites with contrasted settings (hydrological and climatic conditions) could provide insight on the dominant hydrological processes and their impact on DOC dynamics in peatlands. Binet S., Gogo S., Laggoun-Défarge F., A water-table dependent reservoir model to investigate the effect of drought and vascular plant invasion on peatland hydrology, Journal of Hydrology, Volume 499, 30 August 2013, Pages 132-139, ISSN 0022-1694, http://dx.doi.org/10.1016/j.jhydrol.2013.06.035.

Concentration and age of DOC transported from thawing permafrost soils into Arctic headwater streams

NASA Astrophysics Data System (ADS)

Romano, E. L.; Wickland, K.; Ebert, C.; Schuur, E.

2017-12-01

As Arctic permafrost stability decreases due to global climate change, hydrologic dynamics in catchments underlain by permafrost are expected to shift. The thickness of seasonally thawed surface soils is an important driver of the extent to which carbon (C) that was previously stored as frozen soil organic carbon (SOC) will be transported laterally as dissolved organic carbon (DOC). The concentration and radiocarbon (14C) age of newly thawed DOC that moves downslope through tundra soils and is delivered to headwater streams is an important indicator of changing C dynamics. Understanding the timing and quantity of C loss in this form is imperative for greenhouse gas emission and soil C stock estimates, as well as predicting the impact of permafrost thaw on aquatic ecosystems. In this study we examined the relationship between DOC concentrations, 14C-DOC, and active layer thickness (ALT) in thawing soils over time. Water samples were collected once in July 2016 and weekly in 2017 from late May to late August from wells within a long-term tundra soil warming experiment (n=36), located in a discontinuous permafrost zone in Interior Alaska. Preliminary data from 2016 shows average maximum ALT at wells within the warming treatment of 68.9 cm, while wells from control averaged 86.6 cm. 2016 water sample data from wells within the warming treatment showed higher mean DOC concentrations (103.1 ± 32.5 mg/L) and older 14C-DOC values (-28.7 ± 21.1 ‰) than samples from the control (44.5 ± 3.0 mg/L and 11.3 ± 8.6 ‰). To assess inter-annual changes in DOC delivery to local headwater streams, DOC concentration and 14C-DOC were also measured on water samples taken in late summer of 2007, 2008, and 2016 from streams within the watershed surrounding the experimental sites. Weekly sampling in 2017 allowed analysis of seasonal patterns of DOC concentration for that year. Values increased slightly over time at some stream sites (ranging from 4-33 mg/L in 2012 to 2-80 mg/L in 2016). Seasonal and inter-annual permafrost thaw appears to drive the release of previously stored old C in the form of DOC, which increases downslope mobility. In-situ terrestrial greenhouse gas emission estimates may therefore underestimate C losses, especially when precipitation is high or early in the season when spring snowmelt and shallow ALT promote lateral transport of DOC.

Quality transformation of dissolved organic carbon during water transit through lakes: contrasting controls by photochemical and biological processes

NASA Astrophysics Data System (ADS)

Berggren, Martin; Klaus, Marcus; Panneer Selvam, Balathandayuthabani; Ström, Lena; Laudon, Hjalmar; Jansson, Mats; Karlsson, Jan

2018-01-01

Dissolved organic carbon (DOC) may be removed, transformed, or added during water transit through lakes, resulting in changes in DOC composition and pigmentation (color). However, the process-based understanding of these changes is incomplete, especially for headwater lakes. We hypothesized that because heterotrophic bacteria preferentially consume noncolored DOC, while photochemical processing removes colored fractions, the overall changes in DOC color upon water passage through a lake depend on the relative importance of these two processes, accordingly. To test this hypothesis we combined laboratory experiments with field studies in nine boreal lakes, assessing both the relative importance of different DOC decay processes (biological or photochemical) and the loss of color during water transit time (WTT) through the lakes. We found that influence from photo-decay dominated changes in DOC quality in the epilimnia of relatively clear headwater lakes, resulting in systematic and selective net losses of colored DOC. However, in highly pigmented brown-water lakes (absorbance at 420 nm > 7 m-1) biological processes dominated, and there was no systematic relationship between color loss and WTT. Moreover, in situ data and dark experiments supported our hypothesis on the selective microbial removal of nonpigmented DOC, mainly of low molecular weight, leading to persistent water color in these highly colored lakes. Our study shows that brown headwater lakes may not conform to the commonly reported pattern of the selective removal of colored constituents in freshwaters, as DOC can show a sustained degree of pigmentation upon transit through these lakes.

Source water controls on the character and origin of dissolved organic matter in streams of the Yukon River basin, Alaska

USGS Publications Warehouse

O'Donnell, Jonathan A.; Aiken, George R.; Kane, Evan S.; Jones, Jeremy B.

2010-01-01

Climate warming and permafrost degradation at high latitudes will likely impact watershed hydrology, and consequently, alter the concentration and character of dissolved organic carbon (DOC) in northern rivers. We examined seasonal variation of DOC chemistry in 16 streams of the Yukon River basin, Alaska. Our primary objective was to evaluate the relationship between source water (shallow versus deep groundwater flow paths) and DOC chemical composition. Using base cation chemistry and principal component analysis, we observed high contributions of deep groundwater to glacial and clearwater streams, whereas blackwater streams received larger contributions from shallow groundwater sources. DOC concentration and specific ultraviolet absorbance peaked during spring snowmelt in all streams, and were consistently higher in blackwater streams than in glacial and clearwater streams. The hydrophobic acid fraction of DOC dominated across all streams and seasons, comprising between 35% and 56% of total DOC. The hydrophilic acid fraction of DOC was more prominent in glacial (23% ± 3%) and clearwater streams (19% ± 1%) than in blackwater streams (16% ± 1%), and was enriched during winter base flow (29% ± 1%) relative to snowmelt and summer base flow. We observed that an increase in the contribution of deep groundwater to streamflow resulted in decreased DOC concentration, aromaticity, and DOC-to-dissolved organic nitrogen ratio, and an increase in the proportion of hydrophilic acids relative to hydrophobic acids. Our findings suggest that future permafrost degradation and higher contributions of groundwater to streamflow may result in a higher fraction of labile DOM in streams of the Yukon basin.

Long-term environmental drivers of DOC fluxes: Linkages between management, hydrology and climate in a subtropical coastal estuary

NASA Astrophysics Data System (ADS)

Regier, Peter; Briceño, Henry; Jaffé, Rudolf

2016-12-01

Urban and agricultural development of the South Florida peninsula has disrupted historic freshwater flow in the Everglades, a hydrologically connected ecosystem stretching from central Florida to the Gulf of Mexico, USA. Current system-scale restoration efforts aim to restore natural hydrologic regimes to reestablish pre-drainage ecosystem functioning through increased water availability, quality and timing. Aquatic transport of carbon in this ecosystem, primarily as dissolved organic carbon (DOC), plays a critical role in biogeochemical cycling and food-web dynamics, and will be affected both by water management policies and climate change. To better understand DOC dynamics in South Florida estuaries and how hydrology, climate and water management may affect them, 14 years of monthly data collected in the Shark River estuary were used to examine DOC flux dynamics in a broader environmental context. Multivariate statistical methods were applied to long-term datasets for hydrology, water quality and climate to untangle the interconnected environmental drivers that control DOC export at monthly and annual scales. DOC fluxes were determined to be primarily controlled by hydrology but also by seasonality and long-term climate patterns and episodic weather events. A four-component model (salinity, rainfall, inflow, Atlantic Multidecadal Oscillation) capable of predicting DOC fluxes (R2 = 0.84, p < 0.0001, n = 155) was established and applied to potential climate change scenarios for the Everglades to assess DOC flux response to climate and restoration variables. The majority of scenario runs indicated that DOC export from the Everglades is expected to decrease due to future changes in rainfall, water management and salinity.

Seasonal Changes of DOC Composition of Rivers in Temperate Monsoon Climates

NASA Astrophysics Data System (ADS)

Oh, N. H.; Shin, Y.; Lee, E. J.; Hur, J.

2014-12-01

The spatial and seasonal dynamics of dissolved organic carbon (DOC) composition and biodegradability were investigated for the five largest rivers in the Republic of Korea during the years 2012 - 2013 using dark incubation experiments and spectroscopic measurements, including parallel factor analysis (PARAFAC). The DOC concentrations of the rivers in relatively steep and forest-dominated basins were <~2 mg L-1, and remained relatively constant over the seasons. In contrast, those of the rivers influenced by urban and agricultural activities rose up to 5.4 mg L-1, which was decreased to ~2 mg L-1 during the summer monsoon period, indicating that increased precipitation had the effect of dilution. Among the fluorescence components, terrestrial humic-like components were dominant in all the rivers except for one, where tyrosine- or tryptophan-like compounds were the major component. However, terrestrial humic-like components became dominant in all five of the rivers after high precipitation which occurred during the monsoon season, during which ~76% of the annual precipitation was received. Considering that 64% of South Korea is forested, our results suggest that the forests could be a large source of riverine DOC, elevating the DOC loads during monsoon rainfall. Although more DOC could be degraded when DOC input increased, regardless of its sources, the percent biodegradability was reduced with increased proportions of terrestrially derived and aromatic compounds. These results suggest that the relatively stable and terrestrial humic-like compounds released during the monsoon rainfall could reduce the potential of microbial respiration of riverine DOC and evasion of river CO2 to the atmosphere, despite of the increase in the DOC load.

Dissolved organic carbon fluxes from soils in the Alaskan coastal temperate rainforest

NASA Astrophysics Data System (ADS)

D'Amore, D. V.; Edwards, R.; Hood, E. W.; Herendeen, P. A.; Valentine, D.

2011-12-01

Soil saturation and temperature are the primary factors that influence soil carbon cycling. Interactions between these factors vary by soil type, climate, and landscape position, causing uncertainty in predicting soil carbon flux from. The soils of the North American perhumid coastal temperate rainforest (NCTR) store massive amounts of carbon, yet there is no estimate of dissolved organic carbon (DOC) export from different soil types in the region. There are also no working models that describe the influence of soil saturation and temperature on the export of DOC from soils. To address this key information gap, we measured soil water table elevation, soil temperature, and soil and stream DOC concentrations to calculate DOC flux across a soil hydrologic gradient that included upland soils, forested wetland soils, and sloping bog soils in the NCTR of southeast Alaska. We found that increased soil temperature and frequent fluctuations of soil water tables promoted the export of large quantities of DOC from wetland soils and relatively high amounts of DOC from mineral soils. Average area-weighted DOC flux ranged from 7.7 to 33.0 g C m-2 y-1 across a gradient of hydropedologic soil types. The total area specific export of carbon as DOC for upland, forested wetland and sloping bog catchments was 77, 306, and 329 Kg C ha-1 y-1 respectively. The annual rate of carbon export from wetland soils in this region is among the highest reported in the literature. These findings highlight the importance of terrestrial-aquatic fluxes of DOC as a pathway for carbon loss in the NCTR.

The fate of terrigenous dissolved organic carbon on the Eurasian shelves and export to the North Atlantic

NASA Astrophysics Data System (ADS)

Kaiser, K.; Benner, R.; Amon, R. M. W.

2017-01-01

Dissolved lignin phenols, chromophoric dissolved organic matter (CDOM) absorption, and fluorescence were analyzed along cross-slope mooring locations in the Barents, Laptev, and East Siberian Seas to gain a better understanding of terrigenous dissolved organic carbon (tDOC) dynamics in Arctic shelf seas and the Arctic Ocean. A gradient of river water and tDOC was observed along the continental shelf eastward into the East Siberian Sea. Correlations of carbon-normalized yields of lignin-derived phenols supplied by Siberian rivers with river water fractions and known water residence times yielded in situ decay constants of 0.18-0.58 yr-1. Calculations showed ˜50% of annual tDOC discharged by Siberian rivers was mineralized in estuaries and on Eurasian shelves per year indicating extensive removal of tDOC. Bioassay experiments and in situ decay constants indicated a reactivity continuum for tDOC. CDOM parameters and acid/aldehyde ratios of vanillyl (V) and syringyl (S) lignin phenols showed biomineralization was the dominant mechanism for the removal of tDOC. Characteristic ratios of p-hydroxy (P), S, and V phenols (P/V, S/V) also identified shelf regions in the Kara Sea and regions along the Western Laptev Sea shelf where formation of Low Salinity Halocline Waters (LSHW) and Lower Halocline Water (LHW) occurred. The efficient removal of tDOC demonstrates the importance of Eurasian margins as sinks of tDOC derived from the large Siberian Rivers and confirms tDOC mineralization has a major impact on nutrients budgets, air-sea CO2 exchange, and acidification in the Siberian Shelf Seas.

The fate of terrigenous dissolved organic carbon on the Eurasian shelves and export to the North Atlantic

NASA Astrophysics Data System (ADS)

Kaiser, Karl; Amon, Rainer; Benner, Ronald

2017-04-01

Dissolved lignin phenols, chromophoric dissolved organic matter (CDOM) absorption, and fluorescence were analyzed along cross-slope mooring locations in the Barents, Laptev, and East Siberian Seas to gain a better understanding of terrigenous dissolved organic carbon (tDOC) dynamics in Arctic shelf seas and the Arctic Ocean. A gradient of river water and tDOC was observed along the continental shelf eastward into the East Siberian Sea. Correlations of carbon-normalized yields of lignin-derived phenols supplied by Siberian rivers with river water fractions and known water residence times yielded in situ decay constants of 0.18-0.58 per year. Calculations showed about 50% of annual tDOC discharged by Siberian rivers was mineralized in estuaries and on the Eurasian shelves per year indicating extensive removal of tDOC. Bioassay experiments and in situ decay constants indicated a reactivity continuum for tDOC. CDOM parameters and acid/aldehyde ratios of vanillyl (V) and syringyl (S) lignin phenols showed biomineralization was the dominant mechanism for the removal of tDOC. Characteristic ratios of p-hydroxy (P), S, and V phenols (P/V, S/V) also identified shelf regions in the Kara Sea and regions along the Western Laptev Sea shelf where formation of Low Salinity Halocline Waters (LSHW) and Lower Halocline Water (LHW) occurred. The efficient removal of tDOC demonstrates the importance of Eurasian margins as sinks of tDOC derived from the large Siberian Rivers and confirms tDOC mineralization has a major impact on nutrients budgets, air-sea CO2 exchange, and acidification in the Siberian Shelf Seas.

Variation of the isotopic composition of dissolved organic carbon during the runoff cycle in the Amazon River and the floodplains

NASA Astrophysics Data System (ADS)

Albéric, Patrick; Pérez, Marcela A. P.; Moreira-Turcq, Patricia; Benedetti, Marc F.; Bouillon, Steven; Abril, Gwenaël

2018-01-01

Given the relative scarcity of stable isotope data on dissolved organic carbon (DOC) in the Amazon Basin, we hypothesized that the variability in DOC sources may be underestimated in such major river basins. To explore the links between the mainstem and tributaries and the floodplain, particular efforts were made during five distinct cruises at different stages of the hydrograph between October 2008 and January 2011, to document the spatial and temporal variation of DOC concentrations and δ13C-DOC in the central Amazon River system (Brazil). Based on more than 200 data, the spatial and temporal variability of δ13C-DOC values was found to be larger than previously reported in the same area. Although a small range of variation was observed throughout the hydrological cycle in the upper reach of the studied section (-29.2 to -29.5‰ in the Rio Negro and -28.7 to -29.0‰ in the Rio Solimões), a much larger one (-28.0 to -34.6‰) was found in the lower reach of the river, as the proportion of open lakes increased downstream in the floodplains. The low variability in the upper reaches suggests constant and homogeneous DOC sources from upland soils and flooded forest, while lower δ13C-DOC values recorded in the lower reach mainstem at high and falling waters can be attributed to a greater export of plankton-derived 13C-depleted DOC from flooded lakes. Noteworthy are the higher δ13C-DOC values measured in the Rio Madeira and the associated flooded lakes (-26.5 to -28.8‰), which may reflect the imprint from upland headwaters and a weaker density of flooded forest in the watershed. The higher δ13C-DOC values observed in the lower reach during low waters are still not fully understood. Floating meadows principally consisting of C4 macrophytes were found to increase δ13C-DOC values by ∼1.5‰ in their vicinity, but this impact was no longer noticeable at distances of ∼10 m from the plant rafts. This rather modest 13C-enrichment suggests rapid decomposition and/or dilution of this wetland-derived DOC.

Identifying dissolved organic carbon sources at a gaged headwater catchment using FDOM sensors

NASA Astrophysics Data System (ADS)

Malzone, J. M.; Shanley, J. B.

2014-12-01

The United States Geological Survey's (USGS) W-9 gage at the headwaters of Sleepers River, Vermont has been monitored for dissolved organic carbon (DOC) concentration for more than 20 years. However, the sources of this DOC during base flow and hydrologic events remain unclear. The major objectives of this research were to identify sources of DOC during storm events and to explain the observed DOC-streamflow counterclockwise hysteresis during hydrologic events. Two main hypotheses to explain hysteresis during hydrologic events were tested: (1) distant headwater wetlands are the major DOC source, which lags behind peak flow due to travel time; and (2) the entire watershed contributes to the DOC at the gage, but the response of DOC lags behind the period when groundwater contributes most to streamflow. Sources of DOC were tracked using fluorescent dissolved organic matter (FDOM) sensors in surface water and groundwater wells. Wells were installed at four depths, 0.3, 0.6, 0.9, and 1.2 m, at four sites: a peaty low-gradient riparian area near the headwaters; a mid-hillslope area on a long hillslope mid-watershed; a near-stream area on a long hillslope mid-watershed; and a low-gradient tributary confluence area just above the gage. During storm events, FDOM and hydraulic head were measured at the nested groundwater wells. Samples for DOC analysis were also taken to determine the relationship between FDOM and DOC. Results suggest that both distant sources and the greater watershed played a role in the transport of DOC to the W-9 gage. Distant peaty sources dominated during large storms and contributed the highest surface water FDOM measurements. The peak FDOM at the gage was therefore best described as a result of transport. However, export from these distant sources terminated rapidly and did not explain continued elevated FDOM at the gage. Groundwater across the watershed exhibited hysteresis analogous to that in the stream itself, with FDOM peaking as head receded. As groundwater is recharged, the water table intersects more carbon rich soil layers. Pre-event water is flushed out first before event water mobilizes DOC, causing the groundwater hysteresis. High FDOM groundwater discharging to the stream likely sustained elevated FDOM at the gage. The gage hysteresis, therefore, seems to be a result of both hypotheses tested.

Impact of managed moorland burning on DOC concentrations in soil solutions and stream waters

NASA Astrophysics Data System (ADS)

Palmer, Sheila; Wearing, Catherine; Johnson, Kerrylyn; Holden, Joseph; Brown, Lee

2013-04-01

In the UK uplands, prescribed burning of moorland vegetation is a common practice to maintain suitable habitats for game birds. Many of these landscapes are in catchments covered by significant deposits of blanket peat (typically one metre or more in depth). There is growing interest in the effect of land management on the stability of these peatland carbon stores, and their contribution to dissolved and particulate organic carbon in surface waters (DOC and POC, respectively) and subsequent effects on stream biogeochemistry and ecology. Yet there are surprisingly few published catchment-scale studies on the effect of moorland burning on DOC and POC. As part of the EMBER project, stream chemistry data were collected approximately monthly in ten upland blanket peat catchments in the UK, five of which acted as controls and were not subject to burning. The other five catchments were subject to a history of prescribed burning, typically in small patches (300-900 m2) in rotations of 8-25 years. Soil solution DOC was also monitored at four depths at two intensively studied sites (one regularly burned and one control). At the two intensive sites, soil solution DOC was considerably higher at the burned site, particularly in surface solutions where concentrations in excess of 100 mg/L were recorded on several occasions (median 37 mg/L over 18 months). The high soil solution DOC concentrations at the burned site occurred in the most recently burned plots (less than 2 years prior to start of sampling) and the lowest DOC concentrations were observed in plots burned 15-25 years previously. On average, median stream DOC and POC concentrations were approximately 43% and 35% higher respectively in burned catchments relative to control catchments. All streams exhibited peak DOC in late summer/early autumn with higher peak DOC concentrations in burned catchments (20-66 mg/L) compared to control catchments (18-54 mg/L). During winter months, DOC concentrations were low in control catchments (typically less than 15 mg/L) but were highly variable in burned catchments (9-40 mg/L), implying some instability of peat carbon stores and/or fluctuation in source. The results offer strong evidence for an impact of burning on the delivery of DOC to streams, possibly through increased surface run-off from bare or partially vegetated patches.

Dissolved organic carbon and nitrogen release from Holocene permafrost and seasonally frozen soils

NASA Astrophysics Data System (ADS)

Wickland, K.; Waldrop, M. P.; Koch, J. C.; Jorgenson, T.; Striegl, R. G.

2017-12-01

Permafrost (perennially frozen) soils store vast amounts of carbon (C) and nitrogen (N) that are vulnerable to mobilization to the atmosphere as greenhouse gases and to terrestrial and aquatic ecosystems as dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) upon thaw. Such releases will affect the biogeochemistry of arctic and boreal regions, yet little is known about active layer (seasonally frozen) and permafrost source variability that determines DOC and TDN mobilization. We quantified DOC and TDN leachate yields from a range of active layer and permafrost soils in Alaska varying in age and C and N content to determine potential release upon thaw. Soil cores from the upper 1 meter were collected in late winter, when soils were frozen, from three locations representing a range in geographic position, landscape setting, permafrost depth, and soil types across interior Alaska. Two 15 cm-thick segments were extracted from each core: a deep active-layer horizon and a shallow permafrost horizon. Soils were thawed and leached for DOC and TDN yields, dissolved organic matter optical properties, and DOC biodegradability; soils were analyzed for C and N content, and radiocarbon content. Soils had wide-ranging C and N content (<1-44% C, <0.1-2.3% N), and varied in radiocarbon age from 450-9200 years before present - thus capturing typical ranges of boreal and arctic soils. Soil DOC and TDN yields increased linearly with soil C and N content, and decreased with increasing radiocarbon age. However, across all sites DOC and TDN yields were significantly greater from permafrost soils (0.387 ± 0.324 mg DOC g-1 soil; 0.271 ± 0.0271 mg N g-1 soil) than from active layer soils (0.210 ± 0.192 mg DOC g-1 soil; 0.00716 ± 0.00569 mg N g-1 soil). DOC biodegradability increased with increasing radiocarbon age, and was statistically similar for active layer and permafrost soils. Our findings suggest that the continuously frozen state of permafrost soils has preserved higher relative potential DOC and TDN yields compared to seasonally thawed soils exposed to annual leaching and decomposition, and that frozen soils undergo microbial processes that produce labile DOC over time.

Dissolved organic carbon export and its contribution to the carbon budget in a boreal peat landscape undergoing rapid permafrost thaw

NASA Astrophysics Data System (ADS)

Sonnentag, O.; Fouche, J.; Helbig, M.; Karoline, W.; Hould Gosselin, G.; Hanisch, J.; Quinton, W. L.; Moore, T. R.

2017-12-01

Northern permafrost soils store 1035 ± 150 Pg of organic carbon in the first 3 m. In boreal lowlands with warm and thin isolated, sporadic and discontinuous permafrost, increasing temperatures cause a thaw-induced expansion of permafrost-free wetlands at the expense of forested permafrost peat plateaus. Permafrost thaw associated with warmer soils may enhance microbial decomposition of near-surface and deeper organic matter but also increase dissolved organic carbon (DOC) export to aquatic systems. Recent studies suggest that, under a warmer climate, the current net CO2 sink strength of boreal peat landscapes may decline over the next few decades, eventually turning them into net CO2 sources. DOC export from these organic-rich landscapes undergoing rapid permafrost thaw may play a non-negligible role for the carbon budget in a warmer climate. In this study, we quantify the DOC export from a boreal peat landscape in the southern Northwest Territories (Canada). We use half-hourly discharge measurements and DOC concentrations sampled at the outlets of three small catchments ( 0.1 km2) to quantify runoff and DOC export from April to August 2014, 2015 and 2016. We estimate the DOC export contribution to the overall carbon budget using concurrent eddy covariance measurements of net CO2 and methane exchanges. The primary control of DOC export is discharge. In 2016, 70% of the DOC was exported during the two weeks of the spring freshet in early May. DOC export from the three catchments was 3g C m-2 from April to August, which accounted for 15% of the annual net ecosystem exchange. For the same period, the cumulative methane emissions were 6 g C-CH4 m-2. Our findings suggest that thawing boreal peat landscapes along the southern limit of permafrost currently act as net carbon sinks with 11 g C m-2 y-1. Investigating the optical properties of the dissolved organic matter across the different landforms (e.g., transition between forested permafrost peat plateau and permafrost-free wetland) will allow us to assess the different contributions to catchment DOC export and better forecast the changes in DOC lability with permafrost thaw and wetland expansion. Associated with a more rainfall-controlled runoff regime, changes in DOC export with warming may affect the carbon budget in the southern boundaries of the permafrost region.

Advances in the Control System for a High Precision Dissolved Organic Carbon Analyzer

NASA Astrophysics Data System (ADS)

Liao, M.; Stubbins, A.; Haidekker, M.

2017-12-01

Dissolved organic carbon (DOC) is a master variable in aquatic ecosystems. DOC in the ocean is one of the largest carbon stores on earth. Studies of the dynamics of DOC in the ocean and other low DOC systems (e.g. groundwater) are hindered by the lack of high precision (sub-micromolar) analytical techniques. Results are presented from efforts to construct and optimize a flow-through, wet chemical DOC analyzer. This study focused on the design, integration and optimization of high precision components and control systems required for such a system (mass flow controller, syringe pumps, gas extraction, reactor chamber with controlled UV and temperature). Results of the approaches developed are presented.

Influences of glacial melt and permafrost thaw on the age of dissolved organic carbon in the Yukon River basin

USGS Publications Warehouse

Aiken, George R.; Spencer, Robert G.M.; Striegl, Robert G.; Schuster, Paul F.; Raymond, Peter A.

2014-01-01

Responses of near-surface permafrost and glacial ice to climate change are of particular significance for understanding long-term effects on global carbon cycling and carbon export by high-latitude northern rivers. Here we report Δ14C-dissolved organic carbon (DOC) values and dissolved organic matter optical data for the Yukon River, 15 tributaries of the Yukon River, glacial meltwater, and groundwater and soil water end-member sources draining to the Yukon River, with the goal of assessing mobilization of aged DOC within the watershed. Ancient DOC was associated with glacial meltwater and groundwater sources. In contrast, DOC from watersheds dominated by peat soils and underlain by permafrost was typically enriched in Δ14C indicating that degradation of ancient carbon stores is currently not occurring at large enough scales to quantitatively influence bulk DOC exports from those landscapes. On an annual basis, DOC exported was predominantly modern during the spring period throughout the Yukon River basin and became older through summer-fall and winter periods, suggesting that contributions of older DOC from soils, glacial meltwaters, and groundwater are significant during these months. Our data indicate that rapidly receding glaciers and increasing groundwater inputs will likely result in greater contributions of older DOC in the Yukon River and its tributaries in coming decades.

36 year trends in dissolved organic carbon export from Finnish rivers to the Baltic Sea.

PubMed

Räike, Antti; Kortelainen, Pirkko; Mattsson, Tuija; Thomas, David N

2012-10-01

Increasing dissolved organic carbon (DOC) concentrations in lakes, rivers and streams in northern mid latitudes have been widely reported during the last two decades, but relatively few studies have dealt with trends in DOC export. We studied the export of DOC from Finnish rivers to the Baltic Sea between 1975 and 2010, and estimated trends in DOC fluxes (both flow normalised and non-normalised). The study encompassed the whole Finnish Baltic Sea catchment area (301,000 km(2)) covering major land use patterns in the boreal zone. Finnish rivers exported annually over 900,000 t DOC to the Baltic Sea, and the mean area specific export was 3.5 t km(-2). The highest export (7.3t km(-2)) was measured in peat dominated catchments, whereas catchments rich in lakes had the lowest export (2.2 t km(-2)). Inter-annual variation in DOC export was high and controlled mainly by hydrology. There was no overall trend in the annual water flow, although winter flow increased in northern Finland over 36 years. Despite the numerous studies showing increases in DOC concentrations in streams and rivers in the northern hemisphere, we could not find any evidence of increases in DOC export to the northern Baltic Sea from Finnish catchments since 1975. Copyright © 2012 Elsevier B.V. All rights reserved.

Organic Matter in Rivers: The Crossroads between Climate and Water Quality

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davisson, M L

2001-04-27

All surface waters in the world contain dissolved organic matter and its concentration depends on climate and vegetation. Dissolved organic carbon (DOC) is ten times higher in wetlands and swamps than in surface water of arctic, alpine, or arid climate. Climates of high ecosystem productivity (i.e., tropics) typically have soils with low organic carbon storage, but drain high dissolved organic loads to rivers. Regions with lower productivity (e.g. grasslands) typically have high soil carbon storage while adjacent rivers have high DOC contents. Most DOC in a free-flowing river is derived from leaching vegetation and soil organic matter, whereas in dammedmore » rivers algae may comprise a significant portion. Water chemistry and oxygen-18 abundance of river water, along with radiocarbon and carbon-13 isotope abundance measurements of DOC were used to distinguish water and water quality sources in the Missouri River watershed. Drinking water for the City of St. Louis incorporates these different sources, and its water quality depends mostly on whether runoff is derived from the upper or the lower watershed, with the lower watershed contributing water with the highest DOC. During drinking water chlorination, DOC forms carcinogenic by-products in proportion to the amount of DOC present. This has recently led the USEPA to propose federal regulation standards. Restoration of natural riparian habitat such as wetlands will likely increase DOC concentrations in river water.« less

Variation of dissolved organic carbon transported by two Chinese rivers: The Changjiang River and Yellow River.

PubMed

Liu, Dong; Pan, Delu; Bai, Yan; He, Xianqiang; Wang, Difeng; Zhang, Lin

2015-11-15

Real-time monitoring of riverine dissolved organic carbon (DOC) and the associated controlling factors is essential to coastal ocean management. This study was the first to simulate the monthly DOC concentrations at the Datong Hydrometric Station for the Changjiang River and at the Lijin Hydrometric Station for the Yellow River from 2000 to 2013 using a multilayer back-propagation neural network (MBPNN), along with basin remote-sensing products and river in situ data. The average absolute error between the modeled values and in situ values was 9.98% for the Changjiang River and 10.84% for the Yellow River. As an effect of water dilution, the variations of DOC concentrations in the two rivers were significantly negatively affected by discharge, with lower values reported during the wet season. Moreover, vegetation growth status and agricultural activities, represented by the gross primary product (GPP) and cropland area percent (CropPer) in the river basin, respectively, also significantly affected the DOC concentration in the Changjiang River, but not the Yellow River. The monthly riverine DOC flux was calculated using modeled DOC concentrations. In particular, the riverine DOC fluxes were affected by discharge, with 71.06% being reported for the Changjiang River and 90.71% for the Yellow River. Over the past decade, both DOC concentration and flux in the two rivers have not shown significant changes. Copyright © 2015 Elsevier Ltd. All rights reserved.

Dissolved organic carbon from the upper Rio Negro protects zebrafish (Danio rerio) against ionoregulatory disturbances caused by low pH exposure

PubMed Central

Duarte, Rafael M.; Smith, D. Scott; Val, Adalberto L.; Wood, Chris M.

2016-01-01

The so-called “blackwaters” of the Amazonian Rio Negro are rich in highly coloured dissolved organic carbon (DOC), but ion-poor and very acidic, conditions that would cause fatal ionoregulatory failure in most fish. However these blackwaters support 8% of the world’s ichthyofauna. We tested the hypothesis that native DOC provides protection against ionoregulatory dysfunction in this extreme environment. DOCs were isolated by reverse-osmosis from two Rio Negro sites. Physico-chemical characterization clearly indicated a terrigenous origin, with a high proportion of hydroxyl and phenolic sites, high chemical reactivity to protons, and unusual proteinaceous fluorescence. When tested using zebrafish (a model organism), Rio Negro DOC provided almost perfect protection against ionoregulatory disturbances associated with acute exposure to pH 4.0 in ion-poor water. DOC reduced diffusive losses of Na+ and Cl−, and promoted a remarkable stimulation of Na+ uptake that otherwise would have been completely inhibited. Additionally, prior acclimation to DOC at neutral pH reduced rates of branchial Na+ turnover, and provided similar protection against acid-induced ionoregulatory disturbances, even if the DOC was no longer present. These results reinforce the important roles that DOC molecules can play in the regulation of gill functions in freshwater fish, particularly in ion-poor, acidic blackwaters. PMID:26853589

Trisodium phosphate and sodium hypochlorite are more effective as antimicrobials against Campylobacter and Salmonella on duck as compared to chicken meat.

PubMed

Sarjit, Amreeta; Dykes, Gary A

2015-06-16

Little work has been reported on the use of commercial antimicrobials against foodborne pathogens on duck meat. We investigated the effectiveness of trisodium phosphate (TSP) and sodium hypochlorite (SH) as antimicrobial treatments against Campylobacter and Salmonella on duck meat under simulated commercial water chilling conditions. The results were compared to the same treatments on well-studied chicken meat. A six strain Campylobacter or Salmonella cocktail was inoculated (5 ml) at two dilution levels (10(4) and 10(8) cfu/ml) onto 25 g duck or chicken meat with skin and allowed to attach for 10 min. The meat was exposed to three concentrations of pH adjusted TSP (8, 10 and 12% (w/v), pH 11.5) or SH (40, 50 and 60 ppm, pH 5.5) in 30 ml water under simulated spin chiller conditions (4 °C, agitation) for 10 min. In a parallel experiment the meat was placed in the antimicrobial treatments before inoculation and bacterial cocktails were added to the meat after the antimicrobial solution was removed while all other parameters were maintained. Untreated controls and controls using water were included in all experiments. Bacterial numbers were determined on Campylobacter blood-free selective agar and Mueller Hinton agar or xylose deoxycholate agar and tryptone soya agar using the thin agar layer method for Campylobacter and Salmonella, respectively. All TSP concentrations significantly (p<0.05) reduced numbers of Campylobacter (~1.2-6.4 log cfu/cm(2)) and Salmonella (~0.4-6.6 log cfu/cm(2)) on both duck and chicken meat. On duck meat, numbers of Campylobacter were less than the limit of detection at higher concentrations of TSP and numbers of Salmonella were less than the limit of detection at all concentrations of TSP except one. On chicken meat, numbers of Campylobacter and Salmonella were less than the limit of detection only at the lower inoculum level and higher TSP concentrations. By contrast only some of the concentrations of SH significantly (p<0.05) reduced numbers of Campylobacter and Salmonella (~0.2-1.5 log cfu/cm(2)) on both duck and chicken meats. None of the SH treatments resulted in numbers of either pathogen being less than limit of detection. Results indicate that chicken meat has the ability to effectively protect Campylobacter and Salmonella against the impact of trisodium phosphate and sodium hypochlorite while duck meat does not. This study suggests that trisodium phosphate has a strong potential for application in a commercial poultry processing to reduce Campylobacter and Salmonella specifically on duck meat. Copyright © 2015 Elsevier B.V. All rights reserved.

Spatiotemporal Variation of Dissolved Carbon in Semi-humid/arid Inland Waters: A Case Study from Songnen Plain, China

NASA Astrophysics Data System (ADS)

Song, K.; Li, L.; Zang, S.; Zhao, Y.

2012-12-01

Spatial and seasonal variations of dissolved organic carbon (DOC) and inorganic carbon (DIC) in 34 waters across the semi-humid/arid Songnen Plain, China were examined with 320 samples collected in 2011-2012. Large variations in both the concentration and quality of DOC are revealed, ranging from 0.47 mgL-1 to 720 mgL-1, which is mainly caused by the hydro-climatic condition in the plain. Large variations of DOC and DIC concentrations are observed between open (mean ± sd: 5.6 ± 2.4 mgL-1, 57.4 ± 34.7 mgL-1) and closed lakes (43.3 ± 7.9 mgL-1, 172.9 ± 113.3 mgL-1). Temporally, higher DOC and DIC concentrations are measured for ice-underlying water in winter than ice-free seasons. Colored dissolved organic matter (CDOM) and DOC concentrations are higher after high discharge events with terrigenous sources of CDOM/DOC dominated, while autochthonous sources also contributed to CDOM/DOC concentrations during algal bloom seasons. An interesting result of this study is that the non-outflow conditions for various water catchments had condensed effects on the dissolved carbon, resulting in close relationships between salinity and dissolved carbon parameters, e.g. salinity vs DOC (R2 = 0.83, p < 0.001), DIC (R2 = 0.96, p < 0.0001) using data set collected in 2011. Independent data set collected in May 2012 also confirmed this finding, yielding high correlation for salinity vs DOC (R2 = 0.79, p < 0.001), salinity vs DIC (R2 = 0.91, p < 0.0001), highlighting the potential of quantifying DOC/DIC from salinity measurements for thousand of waters dispersed in the semi-arid Songnen Plain. Indices based on CDOM absorption spectra, e.g. E250:365, DOC specific CDOM absorption (SUVA254) and spectral slope ratio (Sr, S275-295/S350-400), were applied to characterize DOM components and sources. Our results indicate high molecular weight CDOM fractions are more abundant in open waters than closed waters.

Temporal-spatial variation of DOC concentration, UV absorbance and the flux estimation in the Lower Dagu River, China

NASA Astrophysics Data System (ADS)

Xi, Min; Kong, Fanlong; Li, Yue; Kong, Fanting

2017-12-01

Dissolved organic carbon (DOC) is an important component for both carbon cycle and energy balance. The concentration, UV absorbance, and export flux of DOC in the natural environment dominate many important transport processes. To better understand the temporal and spatial variation of DOC, 7 sites along the Lower Dagu River were chosen to conduct a comprehensive measurement from March 2013 to February 2014. Specifically, water samples were collected from the Lower Dagu River between the 26th and 29th of every month during the experimental period. The DOC concentration (CDOC) and UV absorbance were analyzed using a total organic carbon analyzer and the ultraviolet-visible absorption spectrum, and the DOC export flux was estimated with a simple empirical model. The results showed that the CDOC of the Lower Dagu River varied from 1.32 to 12.56 mg/L, consistent with global rivers. The CDOC and UV absorbance showed significant spatial variation in the Dagu River during the experiential period because of the upstream natural processes and human activities in the watershed. The spatial variation is mainly due to dam or reservoir constructions, riverside ecological environment changes, and non-point source or wastewater discharge. The seasonal variation of CDOC was mainly related to the source of water DOC, river runoff, and temperature, and the UV absorbance and humification degree of DOC had no obvious differences among months ( P<0.05). UV absorbance was applied to test the CDOC in Lower Dagu River using wave lengths of 254 and 280 nm. The results revealed that the annual DOC export flux varied from 1.6 to 3.76 × 105 g C/km2/yr in a complete hydrological year, significantly lower than the global average. It is worth mentioning that the DOC export flux was mainly concentrated in summer (˜90% of all-year flux in July and August), since the runoff in the Dagu River took place frequently in summer. These observations implied environment change could bring the temporal-spatial variation of DOC and the exports, which would further affect the land-ocean interactions in the Lower Dagu River and the global carbon cycle.

Winter Ground Temperatures Control Snowmelt DOC Export From a Discontinuous Permafrost Watershed: A Multi-Year Perspective

NASA Astrophysics Data System (ADS)

Carey, S. K.

2006-12-01

For discontinuous and continuous permafrost watersheds, the largest mass flux of dissolved organic carbon (DOC) occurs during the snowmelt period. During this time, available allochtonous organic carbon that has accumulated over the winter in frozen organic soils is rapidly flushed to the basin outlet. While this process has been observed now in many river systems of different size and location, there have been few inter-annual reports on the mass of DOC loss and the factors controlling its variability during freshet. Hydrological and DOC fluxes were recorded for the 2002, 2003 and 2006 snowmelt season with supplementary over-winter data for an 8 square kilometer sub-basin (Granger Basin) of the Wolf Creek Research Basin, Yukon Territory, Canada. Granger Basin is an alpine catchment above treeline underlain with discontinuous permafrost (approximately 70 %) and has widespread surface organic soils up to 0.4 m in thickness. Pre-melt snow water equivalent varied widely throughout the basin, yet was greatest in 2006, followed by 2002 and 2003. Ground temperatures were notably colder throughout the 2003 winter compared with 2006 and 2002. For all years, discharge began in mid-May, and was a continuous event in 2002 and 2006. In 2003 four distinct melt-periods were observed due to rising and falling temperatures. During freshet, stream DOC concentration increased rapidly from < 2 mg C/L to > 15 mg C/L on the first ascending limb of the hydrograph in each year. In 2003, DOC was largely flushed from the catchment several weeks prior to peak freshet. DOC concentration in wells and piezometers followed a similar pattern to streamflow DOC, with 2003 groundwater DOC concentrations less than 2002 and 2006. The total mass flux of DOC during freshet was 0.85, 0.45 and 1.01 g C/m2 for 2002, 2003 and 2006 respectively. Despite differences in pre-melt snow accumulation, the timing of melt and the volume of discharge, it appears that spring DOC export is largely controlled by over-winter ground temperatures. This has important implications for carbon mass balances as warming temperatures in the pan-arctic are largely occurring during the winter months.

Deep nitrogen acquisition in warming permafrost soils: Contributions of belowground plant traits and fungal symbioses in the permafrost carbon feedback to climate

NASA Astrophysics Data System (ADS)

Hartnett, H. E.; Palta, M. M.; Grimm, N. B.; Ruhi, A.; van Shaijik, M.

2016-12-01

Tempe Town Lake (TTL) is a hydrologically-regulated reservoir in Tempe, Arizona. The lake has high primary production and receives dissolved organic carbon (DOC) from rainfall, storm flow, and upstream river discharge. We applied an ARIMA time-series model to a three-year period for which we have high-frequency chemistry, meteorology, and streamflow data and analyzed external (rainfall, stream flow) and internal (dissolved O2) drivers of DOC content and composition. DOC composition was represented by fluorescence-based indices (fluorescence index, humification index, freshness) related to DOC source (microbially- vs. terrestrially-derived) and reactivity DOC. Patterns in DOC concentration and composition suggest carbon cycling in the lake responds to both meteorological events and to anthropogenic activity. The fluorescence-derived DOC composition is consistent with seasonally-distinct inputs of algal- and terrestrially-derived carbon. For example, Tempe Town Lake is supersaturated in O2 over 70% of the time, suggesting the system is autotrophic and primary productivity (i.e., O2 saturation state) was the strongest driver of DOC concentration. In contrast, external drivers (rainfall pattern, streamflow) were the strongest determinants of DOC composition. Biological processes (e.g., algal growth) generate carbon in the lake during spring and summer, and high Fluorescence Index and Freshness values at this time are indicative of algal-derived material; these parameters generally decrease with rain or flow suggesting algal-derived carbon is diluted by external water inputs. During dry periods, carbon builds up on the land surface and subsequent rainfall events deliver terrestrial carbon to the lake. Further evidence that rain and streamflow deliver land-derived material are increases in the Humification Index (an indicator of terrestrial material) following rain/flow events. Our results indicate that Tempe Town Lake generates autochthonous carbon and has the capacity to process allochthonous carbon from the urban environment. Ongoing work is comparing these results to other periods in the 10-year time series to test if the driver-DOC relationships are robust over longer time-scales and evaluating how changes in lake management and climate have altered DOC over time.

Temporal Patterns in Dissolved Organic Carbon Composition in an Urban Lake

NASA Astrophysics Data System (ADS)

Hartnett, H. E.; Palta, M. M.; Grimm, N. B.; Ruhi, A.; van Shaijik, M.

2017-12-01

Tempe Town Lake (TTL) is a hydrologically-regulated reservoir in Tempe, Arizona. The lake has high primary production and receives dissolved organic carbon (DOC) from rainfall, storm flow, and upstream river discharge. We applied an ARIMA time-series model to a three-year period for which we have high-frequency chemistry, meteorology, and streamflow data and analyzed external (rainfall, stream flow) and internal (dissolved O2) drivers of DOC content and composition. DOC composition was represented by fluorescence-based indices (fluorescence index, humification index, freshness) related to DOC source (microbially- vs. terrestrially-derived) and reactivity DOC. Patterns in DOC concentration and composition suggest carbon cycling in the lake responds to both meteorological events and to anthropogenic activity. The fluorescence-derived DOC composition is consistent with seasonally-distinct inputs of algal- and terrestrially-derived carbon. For example, Tempe Town Lake is supersaturated in O2 over 70% of the time, suggesting the system is autotrophic and primary productivity (i.e., O2 saturation state) was the strongest driver of DOC concentration. In contrast, external drivers (rainfall pattern, streamflow) were the strongest determinants of DOC composition. Biological processes (e.g., algal growth) generate carbon in the lake during spring and summer, and high Fluorescence Index and Freshness values at this time are indicative of algal-derived material; these parameters generally decrease with rain or flow suggesting algal-derived carbon is diluted by external water inputs. During dry periods, carbon builds up on the land surface and subsequent rainfall events deliver terrestrial carbon to the lake. Further evidence that rain and streamflow deliver land-derived material are increases in the Humification Index (an indicator of terrestrial material) following rain/flow events. Our results indicate that Tempe Town Lake generates autochthonous carbon and has the capacity to process allochthonous carbon from the urban environment. Ongoing work is comparing these results to other periods in the 10-year time series to test if the driver-DOC relationships are robust over longer time-scales and evaluating how changes in lake management and climate have altered DOC over time.

Vegetation and climate controls on potential CO2, DOC and DON production in northern latitude soils

USGS Publications Warehouse

Neff, J.C.; Hooper, D.U.

2002-01-01

Climatic change may influence decomposition dynamics in arctic and boreal ecosystems, affecting both atmospheric CO2 levels, and the flux of dissolved organic carbon (DOC) and dissolved organic nitrogen (DON) to aquatic systems. In this study, we investigated landscape-scale controls on potential production of these compounds using a one-year laboratory incubation at two temperatures (10?? and 30??C). We measured the release of CO2, DOC and DON from tundra soils collected from a variety of vegetation types and climatic regimes: tussock tundra at four sites along a latitudinal gradient from the interior to the north slope of Alaska, and soils from additional vegetation types at two of those sites (upland spruce at Fairbanks, and wet sedge and shrub tundra at Toolik Lake in northern Alaska). Vegetation type strongly influenced carbon fluxes. The highest CO2 and DOC release at the high incubation temperature occurred in the soils of shrub tundra communities. Tussock tundra soils exhibited the next highest DOC fluxes followed by spruce and wet sedge tundra soils, respectively. Of the fluxes, CO2 showed the greatest sensitivity to incubation temperatures and vegetation type, followed by DOC. DON fluxes were less variable. Total CO2 and total DOC release were positively correlated, with DOC fluxes approximately 10% of total CO2 fluxes. The ratio of CO2 production to DOC release varied significantly across vegetation types with Tussock soils producing an average of four times as much CO2 per unit DOC released compared to Spruce soils from the Fairbanks site. Sites in this study released 80-370 mg CO2-C g soil C-1 and 5-46 mg DOC g soil C-1 at high temperatures. The magnitude of these fluxes indicates that arctic carbon pools contain a large proportion of labile carbon that could be easily decomposed given optimal conditions. The size of this labile pool ranged between 9 and 41% of soil carbon on a g soil C basis, with most variation related to vegetation type rather than climate.

Spatial and temporal patterns of dissolved organic matter quantity and quality in the Mississippi River Basin, 1997–2013

USGS Publications Warehouse

Stackpoole, Sarah M.; Stets, Edward G.; Clow, David W.; Burns, Douglas A.; Aiken, George R.; Aulenbach, Brent T.; Creed, Irena F.; Hirsch, Robert M.; Laudon, Hjalmar; Pellerin, Brian; Striegl, Robert G.

2017-01-01

Recent studies have found insignificant or decreasing trends in time-series dissolved organic carbon (DOC) datasets, questioning the assumption that long-term DOC concentrations in surface waters are increasing in response to anthropogenic forcing, including climate change, land use, and atmospheric acid deposition. We used the weighted regressions on time, discharge, and season (WRTDS) model to estimate annual flow-normalized concentrations and fluxes to determine if changes in DOC quantity and quality signal anthropogenic forcing at 10 locations in the Mississippi River Basin. Despite increases in agriculture and urban development throughout the basin, net increases in DOC concentration and flux were significant at only 3 of 10 sites from 1997 to 2013 and ranged between −3.5% to +18% and −0.1 to 19%, respectively. Positive shifts in DOC quality, characterized by increasing specific ultraviolet absorbance at 254 nm, ranged between +8% and +45%, but only occurred at one of the sites with significant DOC quantity increases. Basinwide reductions in atmospheric sulfate deposition did not result in large increases in DOC either, likely because of the high buffering capacity of the soil. Hydroclimatic factors including annual discharge, precipitation, and temperature did not significantly change during the 17-year timespan of this study, which contrasts with results from previous studies showing significant increases in precipitation and discharge over a century time scale. Our study also contrasts with those from smaller catchments, which have shown stronger DOC responses to climate, land use, and acidic deposition. This temporal and spatial analysis indicated that there was a potential change in DOC sources in the Mississippi River Basin between 1997 and 2013. However, the overall magnitude of DOC trends was not large, and the pattern in quantity and quality increases for the 10 study sites was not consistent throughout the basin.

Dissolved organic carbon content and characteristics in relation to carbon dioxide partial pressure across Poyang Lake wetlands and adjacent aquatic systems in the Changjiang basin.

PubMed

Wang, Huaxin; Jiao, Ruyuan; Wang, Fang; Zhang, Lu; Yan, Weijin

2016-12-01

Dissolved organic carbon (DOC) plays diverse roles in carbon biogeochemical cycles. Here, we explored the link between DOC and pCO 2 using high-performance size-exclusion chromatography (HPSEC) with UV 254 detection and excitation emission matrix (EEM) fluorescence spectroscopy to determine the molecular weight distribution (MW) and the spectral characteristics of DOC, respectively. The relationship between DOC and pCO 2 was investigated in the Poyang Lake wetlands and their adjacent aquatic systems. The results indicated significant spatial variation in the DOC concentrations, MW distributions, and pCO 2 . The DOC concentration was higher in the wetlands than in the rivers and lakes. pCO 2 was high in wetlands in which the dominant vegetation was Phragmites australis, whereas it was low in wetlands in which Carex tristachya was the dominant species. DOC was divided into five fractions according to MW, as follows: super-low MW (SLMW, <1 kDa); low MW (LMW, 1-2.5 kDa); intermediate MW (IMW, 2.5-3.5 kDa); high MW (HMW, 3.5-6 kDa); and super-high MW (SMW, > 40 kDa). Rivers contained high proportions of HMW and extremely low amounts of SLMW, whereas wetlands had relatively high proportions of SLMW. The proportion of SMW (SMW p ) was particularly high in wetlands. We found that pCO 2 significantly positively correlated with the proportion of IMW, and significantly negatively correlated with SMW p . These data improve our understanding of the MW of bioavailable DOC and its conversion to CO 2 . The present results demonstrate that both the content and characteristics of DOC significantly affect pCO 2 . pCO 2 and DOC must be studied further to help understanding the role of the wetland on the regional CO 2 budget. Copyright © 2016 Elsevier Ltd. All rights reserved.

Carbon and nitrogen stoichiometry across stream ecosystems

NASA Astrophysics Data System (ADS)

Wymore, A.; Kaushal, S.; McDowell, W. H.; Kortelainen, P.; Bernhardt, E. S.; Johnes, P.; Dodds, W. K.; Johnson, S.; Brookshire, J.; Spencer, R.; Rodriguez-Cardona, B.; Helton, A. M.; Barnes, R.; Argerich, A.; Haq, S.; Sullivan, P. L.; López-Lloreda, C.; Coble, A. A.; Daley, M.

2017-12-01

Anthropogenic activities are altering carbon and nitrogen concentrations in surface waters globally. The stoichiometry of carbon and nitrogen regulates important watershed biogeochemical cycles; however, controls on carbon and nitrogen ratios in aquatic environments are poorly understood. Here we use a multi-biome and global dataset (tropics to Arctic) of stream water chemistry to assess relationships between dissolved organic carbon (DOC) and nitrate, ammonium and dissolved organic nitrogen (DON), providing a new conceptual framework to consider interactions between DOC and the multiple forms of dissolved nitrogen. We found that across streams the total dissolved nitrogen (TDN) pool is comprised of very little ammonium and as DOC concentrations increase the TDN pool shifts from nitrate to DON dominated. This suggests that in high DOC systems, DON serves as the primary source of nitrogen. At the global scale, DOC and DON are positively correlated (r2 = 0.67) and the average C: N ratio of dissolved organic matter (molar ratio of DOC: DON) across our data set is approximately 31. At the biome and smaller regional scale the relationship between DOC and DON is highly variable (r2 = 0.07 - 0.56) with the strongest relationships found in streams draining the mixed temperate forests of the northeastern United States. DOC: DON relationships also display spatial and temporal variability including latitudinal and seasonal trends, and interactions with land-use. DOC: DON ratios correlated positively with gradients of energy versus nutrient limitation pointing to the ecological role (energy source versus nutrient source) that DON plays with stream ecosystems. Contrary to previous findings we found consistently weak relationships between DON and nitrate which may reflect DON's duality as an energy or nutrient source. Collectively these analyses demonstrate how gradients of DOC drive compositional changes in the TDN pool and reveal a high degree of variability in the C: N ratio (3-100) of stream water dissolved organic matter.

Distinct expression of alkaline phosphatase activity in epilimnetic bacteria: Implication for persistent DOC consumption in a P-limited reservoir

NASA Astrophysics Data System (ADS)

Tseng, Y.; Kao, S.; Shiah, F.

2013-12-01

In a P-deficient system, P availability usually controls the microbial activity and thus the ecosystem function. Thingstad et al. (1997) first addressed a 'Malfunctioning Microbial-loop' theory, which stated that low bacterial production (BP) caused by insufficient nutrient supply would result in DOC accumulation in an oligotrophic ecosystem. In this study we re-examined the theory by conducting seasonal patterns and correlations among soluble reactive phosphate (SRP) and DOC, microbial abundances (picocyanobacteria, bacteria, and heterotrophic nanoflagellate; HNF) and activities (primary production, bacterial production, and alkaline phosphatase activity; APA) coupled with enzyme-labeled fluorescence (ELF) assays on bacterioplankton in a subtropical reservoir sharing the common features, nitrate-replete and P-deficient, with most natural freshwater system during Oct 2007-Oct 2008. Persistently high APA was recorded during most of time, implying that the system was P-deficient. Size fractionated APA and ELF assay revealed that bacteria were the major APA contributor. However, significantly low epilimnion DOC was recorded during the stratified summer season accompanying with high BP and APA as well as high PP, implying that heterotrophic bacteria can well sustain in P-deficient system by utilizing DOP to rapidly lower down DOC under relatively high PP. Such findings oppose the 'Malfunctioning Microbial-loop' theory. On the other hand, strong epilimnetic DOC accumulation occurred in Oct 2007 under low light and low PP condition accompanying with high abundance of HNF, implying that HNF grazing may contribute to a certain degree of DOC accumulation. Correlation matrix supported our suggestions. This study testified the DOC dynamics in P-deficient ecosystem are tightly coupled with the source (PP and grazing) and sink (BP). We also suggested that in SRP-limited freshwater systems bacteria are capable of breaking down autochthonous DOC to reduce the chance of DOC accumulation during transport even dam construction continues to increase.

A global hotspot for dissolved organic carbon in hypermaritime watersheds of coastal British Columbia

NASA Astrophysics Data System (ADS)

Oliver, Allison A.; Tank, Suzanne E.; Giesbrecht, Ian; Korver, Maartje C.; Floyd, William C.; Sanborn, Paul; Bulmer, Chuck; Lertzman, Ken P.

2017-08-01

The perhumid region of the coastal temperate rainforest (CTR) of Pacific North America is one of the wettest places on Earth and contains numerous small catchments that discharge freshwater and high concentrations of dissolved organic carbon (DOC) directly to the coastal ocean. However, empirical data on the flux and composition of DOC exported from these watersheds are scarce. We established monitoring stations at the outlets of seven catchments on Calvert and Hecate islands, British Columbia, which represent the rain-dominated hypermaritime region of the perhumid CTR. Over several years, we measured stream discharge, stream water DOC concentration, and stream water dissolved organic-matter (DOM) composition. Discharge and DOC concentrations were used to calculate DOC fluxes and yields, and DOM composition was characterized using absorbance and fluorescence spectroscopy with parallel factor analysis (PARAFAC). The areal estimate of annual DOC yield in water year 2015 was 33.3 Mg C km-2 yr-1, with individual watersheds ranging from an average of 24.1 to 37.7 Mg C km-2 yr-1. This represents some of the highest DOC yields to be measured at the coastal margin. We observed seasonality in the quantity and composition of exports, with the majority of DOC export occurring during the extended wet period (September-April). Stream flow from catchments reacted quickly to rain inputs, resulting in rapid export of relatively fresh, highly terrestrial-like DOM. DOC concentration and measures of DOM composition were related to stream discharge and stream temperature and correlated with watershed attributes, including the extent of lakes and wetlands, and the thickness of organic and mineral soil horizons. Our discovery of high DOC yields from these small catchments in the CTR is especially compelling as they deliver relatively fresh, highly terrestrial organic matter directly to the coastal ocean. Hypermaritime landscapes are common on the British Columbia coast, suggesting that this coastal margin may play an important role in the regional processing of carbon and in linking terrestrial carbon to marine ecosystems.

Assessing Environmental Drivers of DOC Fluxes in the Shark River Estuary: Modeling the Effects of Climate, Hydrology and Water Management

NASA Astrophysics Data System (ADS)

Regier, P.; Briceno, H.; Jaffe, R.

2016-02-01

Urban and agricultural development of the South Florida peninsula has disrupted freshwater flow in the Everglades, a hydrologically connected ecosystem stretching from central Florida to the Gulf of Mexico. Current system-scale restoration efforts aim to restore natural hydrologic regimes to reestablish pre-drainage ecosystem functioning through increased water availability, quality and timing. However, it is uncertain how hydrologic restoration combined with climate change will affect the downstream section of the system, including the mangrove estuaries of Everglades National Park. Aquatic transport of carbon, primarily as dissolved organic carbon (DOC), plays a critical role in biogeochemical cycling and food-web dynamics, and will be affected both by water management policies and climate change. To better understand DOC dynamics in these estuaries and how hydrology, climate and water management may affect them, 14 years of monthly data collected in the Shark River estuary were used to build a DOC flux model. Multi-variate methods were applied to long-term data-sets for hydrology, water quality and climate to untangle the interconnected environmental drivers that control DOC export at intra and inter-annual scales. DOC fluxes were determined to be primarily controlled by hydrology but also by seasonality and long-term climate patterns. Next, a 4-component model (salinity, inflow, rainfall, Atlantic Multidecadal Oscillation) capable of predicting DOC fluxes (R2=0.78, p<0.0001, n=161) was established. Finally, potential climate change scenarios for the Everglades were applied to this model to assess DOC flux variations in response to climate and restoration variables. Although global predictions anticipate that DOC export will generally increase in the future, the majority of scenario runs indicated that DOC export from the Everglades is expected to decrease due to changes in rainfall, evapotranspiration, inflows and sea-level rise.

Dissolved organic carbon and nitrogen release from boreal Holocene permafrost and seasonally frozen soils of Alaska

NASA Astrophysics Data System (ADS)

Wickland, Kimberly P.; Waldrop, Mark P.; Aiken, George R.; Koch, Joshua C.; Torre Jorgenson, M.; Striegl, Robert G.

2018-06-01

Permafrost (perennially frozen) soils store vast amounts of organic carbon (C) and nitrogen (N) that are vulnerable to mobilization as dissolved organic carbon (DOC) and dissolved organic and inorganic nitrogen (DON, DIN) upon thaw. Such releases will affect the biogeochemistry of permafrost regions, yet little is known about the chemical composition and source variability of active-layer (seasonally frozen) and permafrost soil DOC, DON and DIN. We quantified DOC, total dissolved N (TDN), DON, and DIN leachate yields from deep active-layer and near-surface boreal Holocene permafrost soils in interior Alaska varying in soil C and N content and radiocarbon age to determine potential release upon thaw. Soil cores were collected at three sites distributed across the Alaska boreal region in late winter, cut in 15 cm thick sections, and deep active-layer and shallow permafrost sections were thawed and leached. Leachates were analyzed for DOC, TDN, nitrate (NO3 ‑), and ammonium (NH4 +) concentrations, dissolved organic matter optical properties, and DOC biodegradability. Soils were analyzed for C, N, and radiocarbon (14C) content. Soil DOC, TDN, DON, and DIN yields increased linearly with soil C and N content, and decreased with increasing radiocarbon age. These relationships were significantly different for active-layer and permafrost soils such that for a given soil C or N content, or radiocarbon age, permafrost soils released more DOC and TDN (mostly as DON) per gram soil than active-layer soils. Permafrost soil DOC biodegradability was significantly correlated with soil Δ14C and DOM optical properties. Our results demonstrate that near-surface Holocene permafrost soils preserve greater relative potential DOC and TDN yields than overlying seasonally frozen soils that are exposed to annual leaching and decomposition. While many factors control the fate of DOC and TDN, the greater relative yields from newly thawed Holocene permafrost soils will have the largest potential impact in areas dominated by organic-rich soils.

A study of dissolved organic carbon and nitrate export in Catskill Mountain watersheds

NASA Astrophysics Data System (ADS)

Son, K.; Moore, K. E.; Lin, L.; Schneiderman, E. M.; Band, L. E.

2016-12-01

Watersheds in the Catskill Mountain region of New York State have historically experienced soil and stream acidification due to deposition of acidic compounds created from atmospheric SO2 and NOx. Recent studies in this region, and elsewhere in North America and Europe, have shown increases in dissolved organic carbon (DOC) in streams and lakes. Watersheds in the Catskills are the major source of drinking water for New York City and other communities in the region. Due to use of chlorine for disinfection, there is potential for the increase in DOC to lead to increased levels of disinfection byproducts in treated drinking water. Therefore, developing an improved understanding of the sources, fate and transport mechanisms, and export patterns for nitrate and DOC is important for informing watershed and water supply management. In this study, we analyzed the relationships between watershed characteristics, nitrate, and DOC for 12 gauged streams in the Neversink River watershed. Watershed characteristics included topography (elevation, slope, topographic wetness index), vegetation (leaf area index, species composition), soil (soil hydraulic parameters, soil carbon, wetland soil), atmospheric deposition (SO2, NOx), and climate (precipitation, temperature). Our preliminary analysis showed that both watershed slope and baseflow ratio are negatively correlated with annual median DOC concentration. At Biscuit Brook in the Neversink watershed, annual precipitation explained about 25% of annual DOC median concentration. DOC concentration was highly correlated with storm runoff in spring, summer, and fall, but stream nitrate concentration was weakly correlated with storm runoff in most seasons except summer when it was highly correlated with baseflow. We also applied a process-based ecohydrologic model (Regional Hydrologic Ecologic System Simulation, RHESSys) to the Biscuit Brook watershed to explore sources of nitrate and DOC and their movement within the watershed. We expect that this study will increase our understanding of how, when, and where DOC and nitrate are stored and transported to streams, as well as give insights into the key controls on nitrate and DOC processes in Catskill Mountain watersheds.

Enhanced DOC removal using anion and cation ion exchange resins.

PubMed

Arias-Paic, Miguel; Cawley, Kaelin M; Byg, Steve; Rosario-Ortiz, Fernando L

2016-01-01

Hardness and DOC removal in a single ion exchange unit operation allows for less infrastructure, is advantageous for process operation and depending on the water source, could enhance anion exchange resin removal of dissolved organic carbon (DOC). Simultaneous application of cationic (Plus) and anionic (MIEX) ion exchange resin in a single contact vessel was tested at pilot and bench scales, under multiple regeneration cycles. Hardness removal correlated with theoretical predictions; where measured hardness was between 88 and 98% of the predicted value. Comparing bench scale DOC removal of solely treating water with MIEX compared to Plus and MIEX treated water showed an enhanced DOC removal, where removal was increased from 0.5 to 1.25 mg/L for the simultaneous resin application compared to solely applying MIEX resin. A full scale MIEX treatment plant (14.5 MGD) reduced raw water DOC from 13.7 mg/L to 4.90 mg/L in the treated effluent at a bed volume (BV) treatment rate of 800, where a parallel operation of a simultaneous MIEX and Plus resin pilot (10 gpm) measured effluent DOC concentrations of no greater than 3.4 mg/L, even at bed volumes of treatment 37.5% greater than the full scale plant. MIEX effluent compared to simultaneous Plus and MIEX effluent resulted in differences in fluorescence intensity that correlated to decreases in DOC concentration. The simultaneous treatment of Plus and MIEX resin produced water with predominantly microbial character, indicating the enhanced DOC removal was principally due to increased removal of terrestrially derived organic matter. The addition of Plus resin to a process train with MIEX resin allows for one treatment process to remove both DOC and hardness, where a single brine waste stream can be sent to sewer at a full-scale plant, completely removing lime chemical addition and sludge waste disposal for precipitative softening processes. Published by Elsevier Ltd.

Distribution and significance of dissolved organic carbon under three land-use systems, NSW, Australia

NASA Astrophysics Data System (ADS)

Fancy, Rubeca; Wilson, Brian R.; Daniel, Heiko; Osanai, Yui

2017-04-01

Carbon accumulation in surface soils is well documented but very little is known about the mechanisms and processes that result in carbon accumulation and long-term storage in the deeper soil profile. Understanding soil carbon storage and distribution mechanisms is critical to evaluate the sequestration potential of the soils of different land uses. Recent investigations have demonstrated that the movement of dissolved organic carbon (DOC) in the soil profile could contribute significantly to the carbon balance of terrestrial ecosystems. However, very little is known regarding the importance of DOC to vertical distribution of soil organic carbon (SOC) pool through the soil profile in different land-use systems, management practices and conditions prevalent in Australia. We investigated the quantity and distribution of SOC and DOC through the profile under three different land-use systems in northern NSW, Australia. A series of site clusters containing a representative range of land-uses (cultivated, improved pasture and woodland) were selected across the region. Within each land use, we determined SOC and DOC concentration and quantity down the soil profile to a depth of 0-100 cm using six soil depth increments. Here we discuss the distribution and relative importance of DOC down the soil profile to the storage and distribution of carbon. We compare and contrast the patterns associated with the different land use systems and explore potential mechanisms of carbon cycling in these soils. Near to the soil surface, SOC had larger concentrations in the order woodland>improved pasture>cropping at all sites studied. However, DOC was found in significantly larger concentrations in the woodland soils at all soil depths. The larger DOC:TOC ratio in woodland and improved pasture soils suggests a direct relationship between TOC and DOC but increased DOC:TOC ratio in deeper soil layers suggests an increasing importance of DOC in soil carbon cycling in these deeper soils under Australian conditions.

The Role of Alpine Wetlands as Hot Spots of Dissolved Organic Carbon Fluxes in the East River, Colorado

NASA Astrophysics Data System (ADS)

Winnick, M.; Rainaldi, G. R.; Lawrence, C. R.; McCormick, M. E.; Hsu, H. T.; Druhan, J. L.; Williams, K. H.; Maher, K.

2016-12-01

Dissolved organic carbon (DOC) is a critical chemical attribute of freshwater systems, affecting nutrient availability, toxicity and solubility of metals, and biological activity via the absorption of light and microbial consumption of O2 during DOC mineralization. Although DOC contributions to streams are distributed across the landscape in the shallow subsurface, many studies have demonstrated area-outsized contributions from riparian zones with high biological productivity and low subsurface O2 concentrations. In the East River, CO, a high-elevation watershed located in the central Rocky Mountains, initial observations show that DOC concentrations of two tributaries, Rock Creek and Gothic Creek, are elevated by 3-10 times compared to concentrations in the main East River and its other tributaries. These elevated concentrations are qualitatively linked to the unique presence of large wetlands in the headwaters of Rock and Gothic creeks, which due to potential anoxic conditions, experience reduced rates of organic matter decomposition and serve as an elevated source of DOC. In this study we quantify the cycling of organic matter in these alpine wetlands and their area-outsized contributions to East River DOC fluxes. We present concentration profiles of DOC along stream reaches and along subsurface flowpaths that span the transition from hillslope to wetland coupled with high-resolution mapping of chronically-saturated zones and calculate area-weighted fluxes of DOC from wetlands to Rock and Gothic creeks at multiple times through the 2016 growing season. Additionally, soil and groundwater DOC fluxes are compared with depth-resolved organic carbon content from soil cores, substrate quality (C:N), and soil surface CO2 fluxes to evaluate organic carbon budgets in the hillslope and wetland areas feeding Rock Creek. The characterization of these hotspots of DOC generation and transport in the East River is vital to the ability to predict nutrient cycling changes into the future.

High-mountain lakes as a hotspot of dissolved organic matter production in a changing climate

NASA Astrophysics Data System (ADS)

Abood, P. H.; Williams, M. W.; McKnight, D. M.; Hood, E. H.

2004-12-01

Changes in climate may adversely affect mountain environments before downstream ecosystems are affected. Steep topography, thin soils with limited extent, sparse vegetation, short growing seasons, and climatic extremes (heavy snowfalls, cold temperatures, high winds), all contribute to the sensitivity of high mountain environments to perturbations. Here we evaluate the role of oligatrophic high-elevation lakes as "hot spots" of aquatic production that may respond to changes in temperature, precipitation amount, and pollution deposition faster and more directly than co-located terrestrial ecosystems. Our research was conducted in the Rocky Mountains, USA. Water samples were collected for dissolved organic carbon (DOC), other solutes, and water isotopes over the course of the runoff season along a longitudinal transect of North Boulder Creek in the Colorado Front Range from the continental divide and alpine areas to downstream forested systems. Sources of DOC were evaluated using chemical fractionation with XAD-8 resins and fluorescence spectroscopy. There was net DOC production in the two alpine lakes but not for the forested subalpine lake. Oxygen-18 values showed that water residence times in lakes increased dramatically in late summer compared to snowmelt. Chemical fractionation of DOC showed there was a increase in the non-humic acid content across the summer of 2003 at all elevations, with alpine waters showing greater increases than subalpine waters. The fluorescence properties of DOC and water isotopes suggested that DOC in aquatic systems was primarily derived from terrestrial precursor material during snowmelt. However, fluorescence properties of DOC in high-elevation lakes on the recession limb of the hydrograph suggest DOC derived from algal and microbial biomass in the lakes was a more important source of DOC in late summer and fall. Alpine lakes produced 14 times more DOC on unit area basis compared to the surrounding terrestrial ecosystems. We hypothesize that much of the authochthonous production is a result of algal growth in alpine lakes caused by the increases in nitrogen deposition from wetfall.

Estimating dissolved organic carbon concentration in turbid coastal waters using optical remote sensing observations

NASA Astrophysics Data System (ADS)

Cherukuru, Nagur; Ford, Phillip W.; Matear, Richard J.; Oubelkheir, Kadija; Clementson, Lesley A.; Suber, Ken; Steven, Andrew D. L.

2016-10-01

Dissolved Organic Carbon (DOC) is an important component in the global carbon cycle. It also plays an important role in influencing the coastal ocean biogeochemical (BGC) cycles and light environment. Studies focussing on DOC dynamics in coastal waters are data constrained due to the high costs associated with in situ water sampling campaigns. Satellite optical remote sensing has the potential to provide continuous, cost-effective DOC estimates. In this study we used a bio-optics dataset collected in turbid coastal waters of Moreton Bay (MB), Australia, during 2011 to develop a remote sensing algorithm to estimate DOC. This dataset includes data from flood and non-flood conditions. In MB, DOC concentration varied over a wide range (20-520 μM C) and had a good correlation (R2 = 0.78) with absorption due to coloured dissolved organic matter (CDOM) and remote sensing reflectance. Using this data set we developed an empirical algorithm to derive DOC concentrations from the ratio of Rrs(412)/Rrs(488) and tested it with independent datasets. In this study, we demonstrate the ability to estimate DOC using remotely sensed optical observations in turbid coastal waters.

Quantifying tropical peatland dissolved organic carbon (DOC) using UV-visible spectroscopy.

PubMed

Cook, Sarah; Peacock, Mike; Evans, Chris D; Page, Susan E; Whelan, Mick J; Gauci, Vincent; Kho, Lip Khoon

2017-05-15

UV-visible spectroscopy has been shown to be a useful technique for determining dissolved organic carbon (DOC) concentrations. However, at present we are unaware of any studies in the literature that have investigated the suitability of this approach for tropical DOC water samples from any tropical peatlands, although some work has been performed in other tropical environments. We used water samples from two oil palm estates in Sarawak, Malaysia to: i) investigate the suitability of both single and two-wavelength proxies for tropical DOC determination; ii) develop a calibration dataset and set of parameters to calculate DOC concentrations indirectly; iii) provide tropical researchers with guidance on the best spectrophotometric approaches to use in future analyses of DOC. Both single and two-wavelength model approaches performed well with no one model significantly outperforming the other. The predictive ability of the models suggests that UV-visible spectroscopy is both a viable and low cost method for rapidly analyzing DOC in water samples immediately post-collection, which can be important when working at remote field sites with access to only basic laboratory facilities. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Linking major and trace element headwater stream concentrations to DOC release and hydrologic conditions in a bog and peaty riparian zone

NASA Astrophysics Data System (ADS)

Broder, Tanja; Biester, Harald

2017-04-01

Peatlands and organic-rich riparian zones are known to export large amounts of dissolved organic carbon (DOC) to surface water. In organic-rich, acidic headwater streams main carriers for element export are dissolved organic matter (DOM) and organic-iron complexes. In this environment DOM might also act as major carrier for metals, which otherwise may have a low solubility. This study examines annual and short term event-based variations of major and trace elements in a headwater catchment. Patterns are used to trace hydrological pathways and element sources under different hydrologic preconditions. Furthermore, it elucidates the importance of DOC as carrier of different elements in a bog and a peaty riparian catchment. The study was conducted in a small headwater stream draining an ombrotrophic peatland with an adjacent forested area with peaty riparian soils in the Harz Mountains (Germany). Discharge sampling was conducted weekly at two sites from snowmelt to begin of snowfall and in high resolution during selected discharge events in 2013 and 2014. Element concentrations were measured by means of ICP-MS and ICP-OES. A PCA was performed for each site and for annual and event datasets. Results show that a large number of element concentrations strongly correlate with DOC concentrations at the bog site. Even elements like Ca and Mg, which are known to have a low affinity to DOC. Congruently, the first principal component integrates the DOC pattern (element loadings > 0.8: Ca, Fe, Mg, Mn, Zn, As, Sr, Cd, DOC) and explained about 35 % of total variance and even 50 % during rain events (loadings > 0.8: Al, Ca, Fe, Mg, Mn, Zn, Li, Co, As, Sr, Cd, Pb, DOC). The study cannot verify that all correlating elements bind to DOC. It is likely that also a common mobilization pattern in the upper peat layer by plant decomposition causes the same response to changes in hydrologic pathways. Additionally, a low mineral content and an enrichment of elements like Fe and Mn in the upper peat layers due to prevailing redox conditions might play a major role in a bog environment. At the peaty riparian zone only Ca, Fe, and Sr strongly correlated with DOC over the annual record. The PCA of the annual record display no clear DOC component here, but indicates that DOC is influenced by Component one (element loadings > 0.8: Ca, Mg, Zn, Co, Sr) and two (Al, V, La, Pb, U) suggesting different DOC sources in the peaty riparian zone. A large number of elements correlate with DOC during rain event sampling at the riparian zone. In contrast to the bog site the event-based riparian zone PCA distinguished a clear discharge related component with mineral, groundwater related elements (K, Rb, In, Cs, NO3- and SO42-). Pattern of the mineral and DOC components prove that during base flow discharge is generated in a shallow groundwater layer and successively increases upward to the organic-rich upper soil layer with increasing discharge. Contrarily, bog element pattern confirm a dominating surface-near discharge, due to high hydraulic conductivities.

Greenland Ice Sheet exports labile organic carbon to the Arctic oceans

NASA Astrophysics Data System (ADS)

Lawson, E. C.; Wadham, J. L.; Tranter, M.; Stibal, M.; Lis, G. P.; Butler, C. E. H.; Laybourn-Parry, J.; Nienow, P.; Chandler, D.; Dewsbury, P.

2014-07-01

Runoff from small glacier systems contains dissolved organic carbon (DOC) rich in protein-like, low molecular weight (LMW) compounds, designating glaciers as an important source of bioavailable carbon for downstream heterotrophic activity. Fluxes of DOC and particulate organic carbon (POC) exported from large Greenland catchments, however, remain unquantified, despite the Greenland Ice Sheet (GrIS) being the largest source of global glacial runoff (ca. 400 km3 yr-1). We report high and episodic fluxes of POC and DOC from a large (>600 km2) GrIS catchment during contrasting melt seasons. POC dominates organic carbon (OC) export (70-89% on average), is sourced from the ice sheet bed, and contains a significant bioreactive component (9% carbohydrates). A major source of the "bioavailable" (free carbohydrate) LMW-DOC fraction is microbial activity on the ice sheet surface, with some further addition of LMW-DOC to meltwaters by biogeochemical processes at the ice sheet bed. The bioavailability of the exported DOC (26-53%) to downstream marine microorganisms is similar to that reported from other glacial watersheds. Annual fluxes of DOC and free carbohydrates during two melt seasons were similar, despite the approximately two-fold difference in runoff fluxes, suggesting production-limited DOC sources. POC fluxes were also insensitive to an increase in seasonal runoff volumes, indicating a supply limitation in suspended sediment in runoff. Scaled to the GrIS, the combined DOC (0.13-0.17 Tg C yr-1 (±13%)) and POC fluxes (mean = 0.36-1.52 Tg C yr-1 (±14%)) are of a similar order of magnitude to a large Arctic river system, and hence may represent an important OC source to the near-coastal North Atlantic, Greenland and Labrador seas.

How Population Growth and Land-Use Change Increased Fluvial Dissolved Organic Carbon Fluxes over 130 Years in the Thames Basin (UK)

NASA Astrophysics Data System (ADS)

Noacco, V.; Howden, N. J. K.; Wagener, T.; Worrall, F.; Burt, T. P.

2015-12-01

This study investigates drivers of changing dissolved organic carbon (DOC) export in the UK's River Thames basin between 1884 and 2014. Specifically, we consider how the impacts of land-use change and population growth drive increases in DOC concentrations and fluxes at the basin outlet. Such key factors for the long-term increase in riverine DOC in temperate, mineral-soil catchments are still widely debated. First, we estimate soil organic carbon (SOC) stocks in the Thames basin for the period. Second, we convert SOC losses due to land-use change into DOC loss to surface waters through runoff. Finally, we combine this input of DOC with an export coefficient model that considers catchment drivers for DOC release to the river. SOC stocks for each year are calculated from a large database of typical SOC levels for land-uses present in the Thames basin and are combined with literature values of transition times for SOC to adjust to a new level following land-use change. We also account for climate change effects on SOC stock due to temperature increases, which reduces SOC stocks as soil organic matter turnover rates increase. Our work shows that the major driver for DOC increase to the river Thames was the rise in the catchment population, where the increase in urban area was used as a proxy. This highlights the role of sewage effluent in contributing to the rise of fluvial DOC, even though wastewater treatments were in place since the early 1990s. Land-use change had significant but short-term impacts in the increase in DOC, mainly due to massive conversion of permanent grassland into arable land during World War II.

Low dose combinations of 2-methoxyestradiol and docetaxel block prostate cancer cells in mitosis and increase apoptosis.

PubMed

Reiner, Teresita; de las Pozas, Alicia; Gomez, Lourdes A; Perez-Stable, Carlos

2009-04-08

Clinical trials have shown that chemotherapy with docetaxel (Doc) combined with prednisone can improve survival of patients with androgen-independent prostate cancer (AI-PC). It is likely that the combination of Doc with other novel agents would also improve the survival of AI-PC patients. We investigated whether the combination of Doc and 2-methoxyestradiol (2ME2), an endogenous metabolite of estradiol promising for cancer therapy, can increase apoptotic cell death in prostate cancer cells. Low concentration 2ME2 (0.5-1 microM)+Doc (0.05-0.1 nM) combinations inhibit cell growth, increase G2/M cell cycle arrest, and increase apoptosis more effectively than the single concentrations in a variety of human AI-PC cells. Effects on apoptosis were associated with an increase in p53 protein and a decrease in cyclin A-dependent kinase activity. We then investigated whether the combination of 2ME2+Doc can increase apoptotic cell death and inhibit the growth of prostate tumors in the FG/Tag transgenic mouse model of AI-PC. Doses of 2ME2 and Doc that increase mitotic cell cycle arrest result in an increase in apoptosis and lower primary prostate tumor weights in FG/Tag mice. High dose 2ME2+Doc combinations did not increase G2/M cell cycle arrest or apoptosis in AI-PC cell lines and in the FG/Tag mice more than the single drugs. Overall, our data indicate that low dose 2ME2+Doc combinations may provide a treatment strategy that can improve therapeutic efficacy against AI-PC while reducing toxicity often seen in patients treated with Doc.

Investigation of the Effects of Biodiesel-based Na on Emissions Control Components

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brookshear, D. William; Nguyen, Ke; Toops, Todd J

2012-01-01

A single-cylinder diesel engine was used to investigate the impact of biodiesel-based Na on emissions control components using specially blended 20% biodiesel fuel (B20). The emissions control components investigated were a diesel oxidation catalyst (DOC), a Cu-zeolite-based NH{sub 3}-SCR (selective catalytic reduction) catalyst, and a diesel particulate filter (DPF). Both light-duty vehicle, DOC-SCR-DPF, and heavy-duty vehicle, DOC-DPF-SCR, emissions control configurations were employed. The accelerated Na aging is achieved by introducing elevated Na levels in the fuel, to represent full useful life exposure, and periodically increasing the exhaust temperature to replicate DPF regeneration. To assess the validity of the implemented acceleratedmore » Na aging protocol, engine-aged lean NO{sub x} traps (LNTs), DOCs and DPFs are also evaluated. To fully characterize the impact on the catalytic activity the LNT, DOC and SCR catalysts were evaluated using a bench flow reactor. The evaluation of the aged DOC samples and LNT show little to no deactivation as a result of Na contamination. However, the SCR in the light-duty configuration (DOC-SCR-DPF) was severely affected by Na contamination, especially when NO was the only fed NO{sub x} source. In the heavy-duty configuration (DOC-DPF-SCR), no impact is observed in the SCR NO{sub x} reduction activity. Electron probe micro-analysis (EPMA) reveals that Na contamination on the LNT, DOC, and SCR samples is present throughout the length of the catalysts with a higher concentration on the washcoat surface. In both the long-term engine-aged DPF and the accelerated Na-aged DPFs, there is significant Na ash present in the upstream channels; however, in the engine-aged sample lube oil-based ash is the predominant constituent.« less

The degree of circumferential tumour involvement as a prognostic factor in oesophageal cancer.

PubMed

Sillah, Karim; Pritchard, Susan A; Watkins, Gillian R; McShane, James; West, Catharine M; Page, Richard; Welch, Ian M

2009-08-01

Tumour length is an adverse prognostic factor in oesophageal cancer. However, the prognostic role of the degree of oesophageal circumference (DOC) involved by tumour with or without resection margin invasion is not clear. This work assessed the relationship between DOC involved by tumour, clinico-pathological variables and prognosis. The clinico-pathological details of 320 patients who underwent potentially curative oesophagogastrectomy for cancer between 1994 and 2007 were analysed. The DOC involved with tumour measured macroscopically on the resected specimen was classified as small (<2.5 cm, n = 115), large (> or = 2.5 cm, n = 144) or circumferential (i.e. involving the whole circumference, n = 61). Univariate and multivariate survival analyses were carried out. The DOC with tumour was higher in ulcerating tumours than stenosing or polypoidal types (p = 0.017). Tumour length, T-stage, neoadjuvant chemotherapy and vascular invasion were independently associated with DOC with tumour on multivariate analysis (p < 0.05 for all). DOC > or = 2.5 cm was an adverse prognostic factor in univariate analysis (p = 0.002) with a hazard ratio of 1.52 [95% CI 1.13-2.04] compared with those <2.5 cm. Circumferential tumours had a similar prognosis to tumours > or = 2.5 cm (p = 0.60). The prognostic significance of DOC with tumour was lost in multivariate analysis where the factors retaining independence were patient age, T-stage, lymph node metastasis, vascular invasion and positive resection margins. However, when patients were stratified by use of neoadjuvant chemotherapy (n = 121), the DOC with tumour retained prognostic significance on multivariate analysis in the 199 patients who did not undergo neoadjuvant chemotherapy (p = 0.04). The DOC with tumour appears to provide prognostic information in oesophageal cancer surgery, especially in patients who do not undergo preoperative chemotherapy.

The two faces of DOC.

PubMed

Wood, Chris M; Al-Reasi, H A; Smith, D Scott

2011-10-01

Dissolved organic carbon (DOC), through its ability to complex metals and thereby reduce their bioavailability, plays a major role in ameliorating metal toxicity in natural waters. Indeed DOC is a key variable in the Biotic Ligand Model (BLM) for predicting metal toxicity on a site-specific basis. However, recent evidence indicates that all DOCs are not alike, but rather heterogeneous in their ability to protect organisms against metal toxicity, at least in fresh water. The degree of protection appears to correlate with optical properties, such that dark, aromatic-rich compounds of allochthonous origin, with greater humic acid content, are more effective in this regard, particularly against Cu, Ag, and Pb toxicity. The specific absorption coefficient of the DOC in the 300-350nm range (SAC(300-350)) has proven to be a simple and effective index of this protective ability. PARAFAC, a multivariate statistical technique for analysis of excitation-emission fluorescence spectroscopy data, also holds promise for quantifying the humic-like and fulvic-like fluorophores, which tend to be positively and negatively correlated with protective ability, respectively. However, what has been largely missing in the toxicological realm is any appreciation that DOC may also affect the physiology of target organisms, such that part of the protection may occur by a mechanism other than metal complexation. Recently published evidence demonstrates that DOC has effects on Na(+) transport, diffusive permeability, and electrical properties of the gills in fish and crustaceans in a manner which will promote Na(+) homeostasis. These actions could thereby protect against metal toxicity by physiological mechanisms. Future research should investigate potential direct interactions of DOC molecules with the branchial epithelium. Incorporation of optical properties of DOC could be used to improve the predictive capabilities of the BLM. 2011 Elsevier B.V. All rights reserved.

Bacterial production in the water column of small streams highly depends on terrestrial dissolved organic carbon

NASA Astrophysics Data System (ADS)

Graeber, Daniel; Poulsen, Jane R.; Rasmussen, Jes J.; Kronvang, Brian; Zak, Dominik; Kamjunke, Norbert

2016-04-01

In the recent years it has become clear that the largest part of the terrestrial dissolved organic carbon (DOC) pool is removed on the way from the land to the ocean. Yet it is still unclear, where in the freshwater systems terrestrial DOC is actually taken up, and for streams DOC uptake was assumed to happen mostly at the stream bottom (benthic zone). However, a recent monitoring study implies that water column but not benthic bacteria are strongly affected by the amount and composition of DOM entering streams from the terrestrial zone. We conducted an experiment to compare the reaction of the bacterial production and heterotrophic uptake in the water column and the benthic zone to a standardized source of terrestrial DOC (leaf leachate from Beech litter). In detail, we sampled gravel and water from eight streams with a gradient in stream size and land use. For each stream four different treatments were incubated at 16°C for three days and each stream: filtered stream water with gravel stones (representing benthic zone bacteria) or unfiltered stream water (representing water column bacteria), both either with (n = 5) or, without (n = 3) leaf leachate. We found that the bacterial uptake of leaf litter DOC was higher for the benthic zone likely due to the higher bacterial production compared to the water column. In contrast, the bacterial production per amount of leaf leachate DOC taken up was significantly higher for the bacteria in the water column than for those in the benthic zone. This clearly indicates a higher growth efficiency with the leaf leachate DOC for the bacteria in the water column than in the benthic zone. We found a high variability for the growth efficiency in the water column, which was best explained by a negative correlation of the DOC demand with stream width (R² = 0.86, linear correlation of log-transformed data). This was not the case for the benthic zone bacteria (R² = 0.02). This implies that water column bacteria in very small streams are more dependent on terrestrial DOC sources for their growth than those in larger streams. Based on this experiment and literature data we hypothesize that: I) The response of the bacterial production to terrestrial DOC in the water column is stronger than for the benthic zone and is decreasing with increasing stream size, likely due to the increase of autochthonous DOC production within the stream. II) Independent of stream size there is only a small reaction to terrestrial DOC for the bacterial production in the benthic zone, either due to internal DOC production or a stronger dependency on particulate organic carbon. We propose that this terrestrial DOC dependency concept is generally applicable, however, its potential underlying mechanisms and concept predictions need to be tested further for other stream and river ecosystems.

[Roles of soil dissolved organic carbon in carbon cycling of terrestrial ecosystems: a review].

PubMed

Li, Ling; Qiu, Shao-Jun; Liu, Jing-Tao; Liu, Qing; Lu, Zhao-Hua

2012-05-01

Soil dissolved organic carbon (DOC) is an active fraction of soil organic carbon pool, playing an important role in the carbon cycling of terrestrial ecosystems. In view of the importance of the carbon cycling, this paper summarized the roles of soil DOC in the soil carbon sequestration and greenhouse gases emission, and in considering of our present ecological and environmental problems such as soil acidification and climate warming, discussed the effects of soil properties, environmental factors, and human activities on the soil DOC as well as the response mechanisms of the DOC. This review could be helpful to the further understanding of the importance of soil DOC in the carbon cycling of terrestrial ecosystems and the reduction of greenhouse gases emission.

75 FR 12496 - Proposed Information Collection; Comment Request; DOC National Environmental Policy Act...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-16

... DEPARTMENT OF COMMERCE Office of the Secretary Proposed Information Collection; Comment Request; DOC National Environmental Policy Act Environmental Questionnaire and Checklist AGENCY: Office of the...) Environmental Questionnaire and Checklist (EQC) was developed to assist DOC in complying with NEPA by...

Assessment of potential climate change impacts on peatland dissolved organic carbon release and drinking water treatment from laboratory experiments.

PubMed

Tang, R; Clark, J M; Bond, T; Graham, N; Hughes, D; Freeman, C

2013-02-01

Catchments draining peat soils provide the majority of drinking water in the UK. Over the past decades, concentrations of dissolved organic carbon (DOC) have increased in surface waters. Residual DOC can cause harmful carcinogenic disinfection by-products to form during water treatment processes. Increased frequency and severity of droughts combined with and increased temperatures expected as the climate changes, have potentials to change water quality. We used a novel approach to investigate links between climate change, DOC release and subsequent effects on drinking water treatment. We designed a climate manipulation experiment to simulate projected climate changes and monitored releases from peat soil and litter, then simulated coagulation used in water treatment. We showed that the 'drought' simulation was the dominant factor altering DOC release and affected the ability to remove DOC. Our results imply that future short-term drought events could have a greater impact than increased temperature on DOC treatability. Copyright © 2012 Elsevier Ltd. All rights reserved.

Reliability and Validity of the Dyadic Observed Communication Scale (DOCS).

PubMed

Hadley, Wendy; Stewart, Angela; Hunter, Heather L; Affleck, Katelyn; Donenberg, Geri; Diclemente, Ralph; Brown, Larry K

2013-02-01

We evaluated the reliability and validity of the Dyadic Observed Communication Scale (DOCS) coding scheme, which was developed to capture a range of communication components between parents and adolescents. Adolescents and their caregivers were recruited from mental health facilities for participation in a large, multi-site family-based HIV prevention intervention study. Seventy-one dyads were randomly selected from the larger study sample and coded using the DOCS at baseline. Preliminary validity and reliability of the DOCS was examined using various methods, such as comparing results to self-report measures and examining interrater reliability. Results suggest that the DOCS is a reliable and valid measure of observed communication among parent-adolescent dyads that captures both verbal and nonverbal communication behaviors that are typical intervention targets. The DOCS is a viable coding scheme for use by researchers and clinicians examining parent-adolescent communication. Coders can be trained to reliably capture individual and dyadic components of communication for parents and adolescents and this complex information can be obtained relatively quickly.

Predicting nitrogen and acidity effects on long-term dynamics of dissolved organic matter.

PubMed

Rowe, E C; Tipping, E; Posch, M; Oulehle, F; Cooper, D M; Jones, T G; Burden, A; Hall, J; Evans, C D

2014-01-01

Increases in dissolved organic carbon (DOC) fluxes may relate to changes in sulphur and nitrogen pollution. We integrated existing models of vegetation growth and soil organic matter turnover, acid-base dynamics, and organic matter mobility, to form the 'MADOC' model. After calibrating parameters governing interactions between pH and DOC dissolution using control treatments on two field experiments, MADOC reproduced responses of pH and DOC to additions of acidifying and alkalising solutions. Long-term trends in a range of acid waters were also reproduced. The model suggests that the sustained nature of observed DOC increases can best be explained by a continuously replenishing potentially-dissolved carbon pool, rather than dissolution of a large accumulated store. The simulations informed the development of hypotheses that: DOC increase is related to plant productivity increase as well as to pH change; DOC increases due to nitrogen pollution will become evident, and be sustained, after soil pH has stabilised. Copyright © 2013 Elsevier Ltd. All rights reserved.

First dynamic model of dissolved organic carbon derived directly from high-frequency observations through contiguous storms.

PubMed

Jones, Timothy D; Chappell, Nick A; Tych, Wlodek

2014-11-18

The first dynamic model of dissolved organic carbon (DOC) export in streams derived directly from high frequency (subhourly) observations sampled at a regular interval through contiguous storms is presented. The optimal model, identified using the recently developed RIVC algorithm, captured the rapid dynamics of DOC load from 15 min monitored rainfall with high simulation efficiencies and constrained uncertainty with a second-order (two-pathway) structure. Most of the DOC export in the four headwater basins studied was associated with the faster hydrometric pathway (also modeled in parallel), and was soon exhausted in the slower pathway. A delay in the DOC mobilization became apparent as the ambient temperatures increased. These features of the component pathways were quantified in the dynamic response characteristics (DRCs) identified by RIVC. The model and associated DRCs are intended as a foundation for a better understanding of storm-related DOC dynamics and predictability, given the increasing availability of subhourly DOC concentration data.

The Earth System (ES-DOC) Project

NASA Astrophysics Data System (ADS)

Greenslade, Mark; Murphy, Sylvia; Treshansky, Allyn; DeLuca, Cecilia; Guilyardi, Eric; Denvil, Sebastien

2014-05-01

ESSI1.3 New Paradigms, Modelling, and International Collaboration Strategies for Earth System Sciences Earth System Documentation (ES-DOC) is an international project supplying tools & services in support of earth system documentation creation, analysis and dissemination. It is nurturing a sustainable standards based documentation eco-system that aims to become an integral part of the next generation of exa-scale dataset archives. ES-DOC leverages open source software and places end-user narratives at the heart of all it does. ES-DOC has initially focused upon nurturing the Earth System Model (ESM) documentation eco-system. Within this context ES-DOC leverages emerging documentation standards and supports the following projects: Coupled Model Inter-comparison Project Phase 5 (CMIP5); Dynamical Core Model Inter-comparison Project (DCMIP); National Climate Predictions and Projections Platforms Quantitative Evaluation of Downscaling Workshop. This presentation will introduce the project to a wider audience and demonstrate the range of tools and services currently available for use. It will also demonstrate how international collaborative efforts are essential to the success of ES-DOC.

Long-term anoxia and release of ancient, labile carbon upon thaw of Pleistocene permafrost

USGS Publications Warehouse

Ewing, Stephanie A.; O'Donnell, Jonathan A.; Aiken, George R.; Butler, Kenna D.; Butman, David; Windham-Myers, Lisamarie; Kanevskiy, Mikhail

2015-01-01

The fate of permafrost carbon upon thaw will drive feedbacks to climate warming. Here we consider the character and context of dissolved organic carbon (DOC) in yedoma permafrost cores from up to 20 m depth in central Alaska. We observed high DOC concentrations (4 to 129 mM) and consistent low molecular weight organic acid concentrations in three cores. We estimate a DOC production rate of 12 µmol DOC m−2 yr−1 based on model ages of up to ~200 kyr derived from uranium isotopes. Acetate C accounted for 24 ± 1% of DOC in all samples. This proportion suggests long-term anaerobiosis and is likely to influence thaw outcomes due to biolability of acetate upon release in many environments. The combination of uranium isotopes, ammonium concentrations, and calcium concentrations explained 86% of the variation in thaw water DOC concentrations, suggesting that DOC production may be related to both reducing conditions and mineral dissolution over time.

Influence of salinity and dissolved organic carbon on acute Cu toxicity to the rotifer Brachionus plicatilis.

PubMed

Cooper, Christopher A; Tait, Tara; Gray, Holly; Cimprich, Giselle; Santore, Robert C; McGeer, James C; Wood, Christopher M; Smith, D Scott

2014-01-21

Acute copper (Cu) toxicity tests (48-h LC50) using the euryhaline rotifer Brachionus plicatilis were performed to assess the effects of salinity (3, 16, 30 ppt) and dissolved organic carbon (DOC, ∼ 1.1, ∼ 3.1, ∼ 4.9, ∼ 13.6 mg C L(-1)) on Cu bioavailability. Total Cu was measured using anodic stripping voltammetry, and free Cu(2+) was measured using ion-selective electrodes. There was a protective effect of salinity observed in all but the highest DOC concentrations; at all other DOC concentrations the LC50 value was significantly higher at 30 ppt than at 3 ppt. At all salinities, DOC complexation significantly reduced Cu toxicity. At higher concentrations of DOC the protective effect increased, but the increase was less than expected from a linear extrapolation of the trend observed at lower concentrations, and the deviation from linearity was greatest at the highest salinity. Light-scattering data indicated that salt induced colloid formation of DOC could be occurring under these conditions, thereby decreasing the number of available reactive sites to complex Cu. When measurements of free Cu across DOC concentrations at each individual salinity were compared, values were very similar, even though the total Cu LC50 values and DOC concentrations varied considerably. Furthermore, measured free Cu values and predicted model values were comparable, highlighting the important link between the concentration of bioavailable free Cu and Cu toxicity.

Organic carbon export from the Greenland Ice Sheet: sources, sinks and downstream fluxes

NASA Astrophysics Data System (ADS)

Wadham, J. L.; Lawson, E.; Tranter, M.; Stibal, M.; Telling, J.; Lis, G. P.; Nienow, P. W.; Anesio, A. M.; Butler, C. E.

2012-12-01

Runoff from small glacier systems has been shown to contain dissolved organic carbon (DOC) rich in low molecular weight (LMW), and hence more labile forms, designating glaciers as an important source of carbon for downstream heterotrophic activity. Here we assess glacier surfaces as potential sources of labile DOC to downstream ecosystems, presenting data from a wide range of glacier systems to determine sources and sinks of DOC in glacial and proglacial systems. We subsequently focus upon the Greenland Ice Sheet (GrIS) which is the largest source of glacial runoff at present (400 km3 yr-1), with predicted increases in future decades. We report high fluxes of particulate organic carbon (POC), DOC and LMW labile fractions from a large GrIS catchment during two contrasting melt seasons. POC dominates OC export, is sourced from the ice sheet bed and contains a significant bioreactive component (~10% carbohydrates). The LMW-DOC "labile" fraction derives almost entirely from microbial activity on the ice sheet surface, which is supported by data from glacier systems also presented here. Annual fluxes of DOC, POC and labile components were lower in 2010 than 2009, despite a ~2 fold increase in runoff fluxes in 2010, suggesting production-limited DOC/POC sources. Scaled to the entire ice sheet, combined DOC and POC fluxes are of a similar order of magnitude to other large Arctic river systems and may represent an important source of organic carbon to the North Atlantic, Greenland and Labrador Seas.

Modeling rates of DOC degradation using DOM composition and hydroclimatic variables

NASA Astrophysics Data System (ADS)

Moody, C. S.; Worrall, F.

2017-05-01

The fluvial fluxes of dissolved organic carbon (DOC) from peatlands form an important part of that ecosystem's carbon cycle, contributing approximately 35% of the overall peatland carbon budget. The in-stream processes acting on the DOC, such as photodegradation and biodegradation, can lead to DOC loss and thus contribute CO2 to the atmosphere. The aim of this study was to understand what controls the rates of DOC degradation. Water samples from a headwater, peat-covered catchment, were collected over a 23 month period and analyzed for the DOC degradation rate and dissolved organic matter (DOM) composition in the context of hydroclimatic monitoring. Measures of DOM composition included 13C solid-state nuclear magnetic resonance spectroscopy, bomb calorimetry, and elemental analysis. Regression analysis showed that there was a significant role for the composition of the DOM in controlling degradation with degradation rates significantly increasing with the proportion of aldehyde and carboxylic acid functional groups but decreasing with the proportion of N-alkyl functional groups. The highest rates of DOC degradation occurred when aldehyde functionality was at its greatest and this occurred on the recession limb of storm hydrographs. Including this knowledge into models of fluvial carbon fate for an 818 km2 catchment gave an annual average DOC removal rate of 67% and 50% for total organic carbon, slightly lower than previously predicted. The compositional controls suggest that DOM is primarily being used as a ready energy source to the aquatic ecosystem rather than as a nutrient source.

[Influence of land use change on dissolved organic carbon export in Naoli River watershed. Northeast China].

PubMed

Yin, Xiao-min; Lyu, Xian-guo; Liu, Xing-tu; Xue, Zhen-shan

2015-12-01

The present study was conducted to evaluate the influence of land use change on dissolved organic carbon (DOC) export in Naoli River watershed, Northeast China. Seasonal variation of DOC concentrations of the river water and its relationship with land use in the whole watershed and 100 m riparian zone at the annual average scale were analyzed using the method of field sampling, laboratory analysis, GIS and statistics analysis. The results showed that the concentrations of DOC under base flow conditions in spring and summer were significantly higher than that in fall in the study watershed. The seasonal trend of DOC concentrations in wetland-watersheds was similar to that in all the sub-watersheds, while significantly different from that in non-wetland watersheds. On the annual average scale, percentage of wetland in the whole watershed and paddy field in the 100 m riparian zone had positive relationship with the DOC concentration in the river water, while percentage of forest in the whole watershed had negative relationship with it (P < 0.05). It indicated that wetland in the sub-watershed played a significant role in the seasonal variation of DOC in river water of Naoli River watershed. Wetland in the watershed and paddy field in the 100 m riparian zone significantly promoted DOC export, while forest alleviated it. Land use change in the watershed in the past few decades dramatically changed the DOC balance of river water.

Climate Variability, Dissolved Organic Carbon, UV Exposure, and Amphibian Decline

NASA Astrophysics Data System (ADS)

Brooks, P. D.; O'Reilly, C. M.; Diamond, S.; Corn, S.; Muths, E.; Tonnessen, K.; Campbell, D. H.

2001-12-01

Increasing levels of UV radiation represent a potential threat to aquatic organisms in a wide range of environments, yet controls on in situ variability on UV exposure are relatively unknown. The primary control on the penetration of UV radiation in surface water environments is the amount of photoreactive dissolved organic carbon (DOC). Consequently, biogeochemical processes that control the cycling of DOC also affect the exposure of aquatic organisms to UV radiation. Three years of monitoring UV extinction and DOC composition in Rocky Mountain, Glacier, Sequoia/ Kings Canyon, and Olympic National Parks demonstrate that the amount of fulvic acid DOC is much more important than the total DOC pool in controlling UV attenuation. This photoreactive component of DOC originates primarily in soil, and is subject both to biogeochemical controls (e.g. temperature, moisture, vegetation, soil type) on production, and hydrologic controls on transport to surface water and consequently UV exposure to aquatic organisms. Both of these controls are positively related to precipitation with greater production and transport associated with higher precipitation amounts. For example, an approximately 20 percent reduction in precipitation from 1999 to 2000 resulted in a 27% - 59% reduction in the amount of photoreactive DOC at three sites in Rocky Mountain National Park. These differences in the amount of hydrophobic DOC result in an increase in UV exposure in the aquatic environment by a factor of 2 or more. Implications of these findings for observed patterns of amphibian decline will be discussed.

Coupled mobilization of dissolved organic matter and metals (Cu and Zn) in soil columns

NASA Astrophysics Data System (ADS)

Zhao, Lu Y. L.; Schulin, Rainer; Weng, Liping; Nowack, Bernd

2007-07-01

Dissolved organic carbon (DOC) is a key component involved in metal displacement in soils. In this study, we investigated the concentration profiles of soil-borne DOC, Cu and Zn at various irrigation rates with synthetic rain water under quasi steady-state conditions, using repacked soil columns with a metal-polluted topsoil and two unpolluted subsoils. Soil solution was collected using suction cups installed at centimeter intervals over depth. In the topsoil the concentrations of DOC, dissolved metals (Zn and Cu), major cations (Ca 2+ and Mg 2+) and anions ( NO3- and SO42-) increased with depth. In the subsoil, the Cu and Zn concentrations dropped to background levels within 2 cm. All compounds were much faster mobilized in the first 4 cm than in the rest of the topsoil. DOC and Cu concentrations were higher at higher flow rates for a given depth, whereas the concentrations of the other ions decreased with increasing flow rate. The decomposition of soil organic matter resulted in the formation of DOC, SO42-, and NO3- and was the main driver of the system. Regression analysis indicated that Cu mobilization was governed by DOC, whereas Zn mobilization was primarily determined by Ca and to a lesser extent by DOC. Labile Zn and Cu 2+ concentrations were well predicted by the NICA-Donnan model. The results highlight the value of high-resolution in-situ measurements of DOC and metal mobilization in soil profiles.

Complexation of Cd, Ni, and Zn by DOC in polluted groundwater: A comparison of approaches using resin exchange, aquifer material sorption, and computer speciation models (WHAM and MINTEQA2)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Christensen, J.B.; Christensen, T.H.

1999-11-01

Complexation of cadmium (Cd), nickel (Ni), and zinc (Zn) by dissolved organic carbon (DOC) in leachate-polluted groundwater was measured using a resin equilibrium method and an aquifer material sorption technique. The first method is commonly used in complexation studies, while the second method better represents aquifer conditions. The two approaches gave similar results. Metal-DOC complexation was measured over a range of DOC concentrations using the resin equilibrium method, and the results were compared to simulations made by two speciation models containing default databases on metal-DOC complexes (WHAM and MINTEQA2). The WHAM model gave reasonable estimates of Cd and Ni complexationmore » by DOC for both leachate-polluted groundwater samples. The estimated effect of complexation differed less than 50% from the experimental values corresponding to a deviation on the activity of the free metal ion of a factor of 2.5. The effect of DOC complexation for Zn was largely overestimated by the WHAM model, and it was found that using a binding constant of 1.7 instead of the default value of 1.3 would improve the fit between the simulations and experimental data. The MINTEQA2 model gave reasonable predictions of the complexation of Cd and Zn by DOC, whereas deviations in the estimated activity of the free Ni{sup 2+} ion as compared to experimental results are up to a factor of 5.« less

Dissolved Organic Carbon in Headwater Streams and Riparian Soil Organic Carbon along an Altitudinal Gradient in the Wuyi Mountains, China

PubMed Central

Huang, Wei; McDowell, William H.; Zou, Xiaoming; Ruan, Honghua; Wang, Jiashe; Li, Liguang

2013-01-01

Stream water dissolved organic carbon (DOC) correlates positively with soil organic carbon (SOC) in many biomes. Does this relationship hold in a small geographic region when variations of temperature, precipitation and vegetation are driven by a significant altitudinal gradient? We examined the spatial connectivity between concentrations of DOC in headwater stream and contents of riparian SOC and water-soluble soil organic carbon (WSOC), riparian soil C:N ratio, and temperature in four vegetation types along an altitudinal gradient in the Wuyi Mountains, China. Our analyses showed that annual mean concentrations of headwater stream DOC were lower in alpine meadow (AM) than in subtropical evergreen broadleaf forest (EBF), coniferous forest (CF), and subalpine dwarf forest (SDF). Headwater stream DOC concentrations were negatively correlated with riparian SOC as well as WSOC contents, and were unrelated to riparian soil C:N ratio. Our findings suggest that DOC concentrations in headwater streams are affected by different factors at regional and local scales. The dilution effect of higher precipitation and adsorption of soil DOC to higher soil clay plus silt content at higher elevation may play an important role in causing lower DOC concentrations in AM stream of the Wuyi Mountains. Our results suggest that upscaling and downscaling of the drivers of DOC export from forested watersheds when exploring the response of carbon flux to climatic change or other drivers must done with caution. PMID:24265737

Dissolved Organic Carbon Degradation in Response to Nutrient Amendments in Southwest Greenland Lakes

NASA Astrophysics Data System (ADS)

Burpee, B. T.; Northington, R.; Simon, K. S.; Saros, J. E.

2014-12-01

Aquatic ecosystems across the Arctic are currently experiencing rapid shifts in biotic, chemical, and physical factors in response to climate change. Preliminary data from multiple lakes in southwestern Greenland indicate decreasing dissolved organic carbon (DOC) concentrations over the past decade. Though several factors may be contributing to this phenomenon, this study attempts to elucidate the potential of heterotrophic bacteria to degrade DOC in the presence of increasing nutrient concentrations. In certain Arctic regions, nutrient subsidies have been released into lakes due to permafrost thaw. If this is occurring in southwestern Greenland, we hypothesized that increased nutrient concentrations will relieve nutrient limitation, thereby allowing heterotrophic bacteria to utilize DOC as an energy source. This prediction was tested using experimental DOC degradation assays from four sample lakes. Four nutrient amendment treatments (control, N, P, and N + P) were used to simulate in situ subsidies. Five time points were sampled during the incubation: days 0, 3, 6, 14, and 60. Total organic carbon (TOC) and parallel factor (PARAFAC) analysis were used to monitor the relative concentrations of different DOC fractions over time. In addition, samples for extracellular enzyme activity (EEA) analysis were collected at every time point. Early analysis of fulvic and humic pools of DOC do not indicate any significant change from days 0 to 14. This could be due to the fact that these DOC fractions are relatively recalcitrant. This study will be important in determining whether bacterial degradation could be a contributing factor to DOC decline in arctic lakes.

The soil organic carbon content of anthropogenically altered organic soils effects the dissolved organic matter quality, but not the dissolved organic carbon concentrations

NASA Astrophysics Data System (ADS)

Frank, Stefan; Tiemeyer, Bärbel; Bechtold, Michel; Lücke, Andreas; Bol, Roland

2016-04-01

Dissolved organic carbon (DOC) is an important link between terrestrial and aquatic ecosystems. This is especially true for peatlands which usually show high concentrations of DOC due to the high stocks of soil organic carbon (SOC). Most previous studies found that DOC concentrations in the soil solution depend on the SOC content. Thus, one would expect low DOC concentrations in peatlands which have anthropogenically been altered by mixing with sand. Here, we want to show the effect of SOC and groundwater level on the quantity and quality of the dissolved organic matter (DOM). Three sampling sites were installed in a strongly disturbed bog. Two sites differ in SOC (Site A: 48%, Site B: 9%) but show the same mean annual groundwater level of 15 and 18 cm below ground, respectively. The SOC content of site C (11%) is similar to Site B, but the groundwater level is much lower (-31 cm) than at the other two sites. All sites have a similar depth of the organic horizon (30 cm) and the same land-use (low-intensity sheep grazing). Over two years, the soil solution was sampled bi-weekly in three depths (15, 30 and 60 cm) and three replicates. All samples were analyzed for DOC and selected samples for dissolved organic nitrogen (DON) and delta-13C and delta-15N. Despite differences in SOC and groundwater level, DOC concentrations did not differ significantly (A: 192 ± 62 mg/L, B: 163 ± 55 mg/L and C: 191 ± 97 mg/L). At all sites, DOC concentrations exceed typical values for peatlands by far and emphasize the relevance even of strongly disturbed organic soils for DOC losses. Individual DOC concentrations were controlled by the temperature and the groundwater level over the preceding weeks. Differences in DOM quality were clearer. At site B with a low SOC content, the DOC:DON ratio of the soil solution equals the soil's C:N ratio, but the DOC:DON ratio is much higher than the C:N ratio at site A. In all cases, the DOC:DON ratio strongly correlates with delta-13C. There is no isotope data for site C. Delta-15N is more enriched at site B than at site A, indicating differences in C and N cycling and potential influence of the dominant vegetation (grasses vs. Sphagnum mosses).

Representation of Dissolved Organic Carbon in the JULES Dynamic Global Vegetation Model

NASA Astrophysics Data System (ADS)

Nakhavali, Mahdi; Friedlingstein, Pierre; Guenet, Bertrand; Ciais, Philip

2017-04-01

Current global models of the carbon cycle consider only vertical gas exchanges between terrestrial or oceanic reservoirs and the atmosphere, hence not considering lateral transport of carbon from the continent to the oceans. This also means that such models implicitly consider that all the CO2 which is not respired to the atmosphere is stored on land, hence overestimating the land sink of carbon. Moving toward a boundless carbon cycle that is integrating the whole continuum from land to ocean to atmosphere is needed in order to better understand Earth's carbon cycle and to make more reliable projection of its future. Here we present an original representation of Dissolved Organic Carbon (DOC) processes in the Joint UK Land Environment Simulator (JULES). The standard version of JULES represent energy, water and carbon cycles and exchanges with the atmosphere, but only account for water run-off, not including export of carbon from terrestrial ecosystems to the aquatic environments. The aim of the project is to include in JULES a representation of DOC production in terrestrial soils, due to incomplete decomposition of organic matter, its decomposition to the atmosphere, and its export to the river network by leaching. In new developed version of JULES (JULES-DOCM), DOC pools, based on their decomposition rate, are classified into labile and recalcitrant within 3 meters of soil. Based on turnover rate, DOC coming from plant material pools and microbial biomass is directed to labile pool, while DOC from humus is directed to recalcitrant pool. Both of these pools have free (dissolved) and locked (adsorbed) form where just the free pool is subjected to decomposition and leaching. DOC production and decomposition are controlled by rate modifiers (moisture, temperature, vegetation fraction and decomposition rate) at each soil layer. Decomposed DOC is released to the atmosphere following a fixed carbon use efficiency. Leaching accounts for both surface (runoff) and subsurface (groundwater) components and is parameterized as Top soil leaching (from top 20cm) and Bottom soil leaching (down to 3 meters) depending on DOC concentration and runoff leaving that layer. The model parameters are calibrated against specific sites (Brasschaat, Hainich and Carlow) for which observations of DOC concentration and leaching are available. Tuning is performed optimizing parameters such as DOC labile and recalcitrant resident time, DOC vertical distribution and CUE. Once this calibration has been performed at the site level, the model is used for global simulations with the major historical forcing (climate, atmospheric CO2 and land-use changes) in order to estimate the changes of DOC export and their attribution to anthropogenic activities.

Molecular assessment of collagen denaturation in decellularized tissues using a collagen hybridizing peptide.

PubMed

Hwang, Jeongmin; San, Boi Hoa; Turner, Neill J; White, Lisa J; Faulk, Denver M; Badylak, Stephen F; Li, Yang; Yu, S Michael

2017-04-15

Decellularized extracellular matrix (ECM) derived from tissues and organs are emerging as important scaffold materials for regenerative medicine. Many believe that preservation of the native ECM structure during decellularization is highly desirable. However, because effective techniques to assess the structural damage in ECM are lacking, the disruptive effects of a decellularization method and the impact of the associated structural damage upon the scaffold's regenerative capacity are often debated. Using a novel collagen hybridizing peptide (CHP) that specifically binds to unfolded collagen chains, we investigated the molecular denaturation of collagen in the ECM decellularized by four commonly used cell-removing detergents: sodium dodecyl sulfate (SDS), 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate (CHAPS), sodium deoxycholate (SD), and Triton X-100. Staining of the detergent-treated porcine ligament and urinary bladder matrix with carboxyfluorescein-labeled CHP demonstrated that SDS and Triton X-100 denature the triple helical collagen molecule while CHAPS and SD do not, although second harmonic generation imaging and transmission electron microscopy (TEM) revealed that all four detergents disrupt collagen fibrils. Our findings from the CHP staining were further confirmed by the circular dichroism spectra of intact triple helical collagen molecules in CHAPS and SD solutions, and the TEM images of CHP-conjugated gold nanoparticles binding only to the SDS and Triton X-100 treated collagen fibrils. CHP is a powerful new tool for direct and reliable measurement of denatured collagen molecules in decellularized tissues. It is expected to have wide applications in the development and standardization of the tissue/organ decellularization technology. Preservation of the native ECM structure in decellularized tissues is highly desirable, since denaturation of ECM molecules (e.g., collagen) during decellularization can strongly influence the cellular response. Unfortunately, conventional techniques (SEM, SHG) are not conducive to identifying denatured collagen molecules in tissues. We demonstrate the first investigation into the molecular denaturation of collagen in decellularized ECM enabled by a novel Collagen Hybridizing Peptide (CHP) that specifically binds to unfolded collagen chains. We show that SDS and Triton X-100 denature collagen molecules while CHAPS and SD cannot. Such detection has been nearly impossible with other existing techniques. The CHP technique will advance our understanding about the effect of the cell-removing process on ECM, and lead to development of the decellularization technology. Copyright © 2017 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Molecular assessment of collagen denaturation in decellularized tissues using a collagen hybridizing peptide

PubMed Central

Hwang, Jeongmin; San, Boi Hoa; Turner, Neill J.; White, Lisa J.; Faulk, Denver M.; Badylak, Stephen F.; Li, Yang; Yu, S. Michael

2017-01-01

Decellularized extracellular matrix (ECM) derived from tissues and organs are emerging as important scaffold materials for regenerative medicine. Many believe that preservation of the native ECM structure during decellularization is highly desirable. However, because effective techniques to assess the structural damage in ECM are lacking, the disruptive effects of a decellularization method and the impact of the associated structural damage upon the scaffold’s regenerative capacity are often debated. Using a novel collagen hybridizing peptide (CHP) that specifically binds to unfolded collagen chains, we investigated the molecular denaturation of collagen in the ECM decellularized by four commonly used cellremoving detergents: sodium dodecyl sulfate (SDS), 3-[(3-cholamidopropyl)dimethylammonio]-1-propa nesulfonate (CHAPS), sodium deoxycholate (SD), and Triton X-100. Staining of the detergent-treated porcine ligament and urinary bladder matrix with carboxyfluorescein-labeled CHP demonstrated that SDS and Triton X-100 denature the triple helical collagen molecule while CHAPS and SD do not, although second harmonic generation imaging and transmission electron microscopy (TEM) revealed that all four detergents disrupt collagen fibrils. Our findings from the CHP staining were further confirmed by the circular dichroism spectra of intact triple helical collagen molecules in CHAPS and SD solutions, and the TEM images of CHP-conjugated gold nanoparticles binding only to the SDS and Triton X-100 treated collagen fibrils. CHP is a powerful new tool for direct and reliable measurement of denatured collagen molecules in decellularized tissues. It is expected to have wide applications in the development and standardization of the tissue/organ decellularization technology. Statement of Significance Preservation of the native ECM structure in decellularized tissues is highly desirable, since denaturation of ECM molecules (e.g., collagen) during decellularization can strongly influence the cellular response. Unfortunately, conventional techniques (SEM, SHG) are not conducive to identifying denatured collagen molecules in tissues. We demonstrate the first investigation into the molecular denaturation of collagen in decellularized ECM enabled by a novel Collagen Hybridizing Peptide (CHP) that specifically binds to unfolded collagen chains. We show that SDS and Triton X-100 denature collagen molecules while CHAPS and SD cannot. Such detection has been nearly impossible with other existing techniques. The CHP technique will advance our understanding about the effect of the cell-removing process on ECM, and lead to development of the decellularization technology. PMID:28161576

Brucella abortus Cyclic β-1,2-Glucan Mutants Have Reduced Virulence in Mice and Are Defective in Intracellular Replication in HeLa Cells

PubMed Central

Briones, Gabriel; Iñón de Iannino, Nora; Roset, Mara; Vigliocco, Ana; Paulo, Patricia Silva; Ugalde, Rodolfo A.

2001-01-01

Null cyclic β-1,2-glucan synthetase mutants (cgs mutants) were obtained from Brucella abortus virulent strain 2308 and from B. abortus attenuated vaccinal strain S19. Both mutants show greater sensitivity to surfactants like deoxycholic acid, sodium dodecyl sulfate, and Zwittergent than the parental strains, suggesting cell surface alterations. Although not to the same extent, both mutants display reduced virulence in mice and defective intracellular multiplication in HeLa cells. The B. abortus S19 cgs mutant was completely cleared from the spleens of mice after 4 weeks, while the 2308 mutant showed a 1.5-log reduction of the number of brucellae isolated from the spleens after 12 weeks. These results suggest that cyclic β-1,2-glucan plays an important role in the residual virulence of the attenuated B. abortus S19 strain. Although the cgs mutant was cleared from the spleens earlier than the wild-type parental strain (B. abortus S19) and produced less inflammatory response, its ability to confer protection against the virulent strain B. abortus 2308 was fully retained. Equivalent levels of induction of spleen gamma interferon mRNA and anti-lipopolysaccharide (LPS) of immunoglobulin G2a (IgG2a) subtype antibodies were observed in mice injected with B. abortus S19 or the cgs mutant. However, the titer of anti-LPS antibodies of the IgG1 subtype induced by the cgs mutant was lower than that observed with the parental S19 strain, thus suggesting that the cgs mutant induces a relatively exclusive Th1 response. PMID:11401996