Restoration of active gully systems following the implementation of bioengineering techniques.

NASA Astrophysics Data System (ADS)

Borja, Pablo; Vanacker, Veerle; Govers, Gerard

2015-04-01

Intensive land use in the central parts of the Andean basin has led to widespread land degradation. The formation of badlands dates back from the 1950s and 1960s. Several studies indicate that human activities have accelerated mountain erosion rates by up to 100 times. In this study, we have evaluated the effects of bio-engineering works aiming to stabilize degraded catchments. Five micro-catchments (0.2 up to 5 ha) have been selected within a 3 km2 area in the lower part of the Loreto catchment (Southern Ecuadorian Andes). The five micro-catchments differ in vegetation cover and implementation of bio-engineering works. The experimental design consisted of three micro-catchments: (1) DI with conservation works, (2) DF with reforestation by Eucalyptus sp and (3) DT with no conservation works. Two micro-catchments have been monitored in an agricultural area: with (AI) and without (AT) bio-engineering works in the active gullies. Small checkdams were constructed in the gully floors of two of the micro-catchments in the badland area (DI) and the agricultural area (AI). The checkdams are made of wood and tires. Water flow has been measured in every micro-catchment, while sediment traps were constructed to monitor sediment transport. Results show that bio-engineering techniques are effective to stabilize active gullies. Deposition of sediments in manmade dams is strongly dependent on previous rainfall events, as well as gully channel slope, and its vegetation cover. From the experimental data, an I30 max threshold value was determined. Above this threshold value, all micro-catchments are actively contributing sediment to the main river system. The checkdams built with wood and tires have an efficiency of 70%, and were shown to be very effective to stabilize active gullies in bad lands through significant reduction (about 62%) of the amount of sediment exported from the micro-catchments. Key words: degraded soils, erosion, sediment, restoration, reforestation

Bioengineering Technology to Control River Soil Erosion using Vetiver (Vetiveria Zizaniodes)

NASA Astrophysics Data System (ADS)

Sriwati, M.; Pallu, S.; Selintung, M.; Lopa, R.

2018-04-01

Erosion is the action of surface processes (such as water flow or wind) that removes soil, rock or dissolved material from one location on the earth’s crust, and then transport it away to another location. Bioengineering is an attempt to maximise the use of vegetation components along riverbanks to cope with landslides and erosion of river cliffs and another riverbank damage. This study aims to analyze the bioengineering of Vetiver as a surface layer for soil erosion control using slope of 100, 200, and 300. This study is conducted with 3 variations of rain intensity (I), at 103 mm/hour, 107 mm/hour, and 130 mm/hour by using rainfall simulator tool. In addition, the USLE (Universal Soil Loss Equation) method is used in order to measure the rate of soil erosion. In this study, there are few USLE model parameters were used such as rainfall erosivity factor, soil erodibility factor, length-loss slope and stepness factor, cover management factor, and support practise factor. The results demonstrated that average of reduction of erosion rate using Vetiver, under 3 various rainfalls, namely rainfall intensity 103 mm/hr had reduced 84.971%, rainfall intensity 107 mm/hr had reduced 86.583 %, rainfall intensity 130 mm/hr had reduced 65.851%.

Introduction to bioengineering: melding of engineering and biological sciences.

PubMed

Shoureshi, Rahmat A

2005-04-01

Engineering has traditionally focused on the external extensions of organisms, such as transportation systems, high-rise buildings, and entertainment systems. In contrast, bioengineering is concerned with inward processes of biologic organisms. Utilization of engineering principles and techniques in the analysis and solution of problems in medicine and biology is the basis for bioengineering. This article discusses subspecialties in bioengineering and presents examples of projects in this discipline.

Role of native and exotic woody vegetation in soil restoration in active gully systems (southern Ecuador)

NASA Astrophysics Data System (ADS)

Borja Ramon, Pablo; Alvarado Moncayo, Dario; Vanacker, Veerle; Cisneros, Pedro; Molina, Armando; Govers, Gerard

2015-04-01

Revegetation projects in degraded lands have the potential to recover essential soil functions. If vegetation restoration is combined with bioengineering techniques, such as the construction of retention dams in active gully systems, soil restoration could be enhanced. One important aspect of this process is the role of vegetation on restoration of soil chemical and physical properties. There is currently a lack of knowledge on the potential of soil restoration in active badland systems, as most studies have concentrated on the direct and visible effect of revegetation on erosion control. The aim of this study is to evaluate the role of revegetation and bioengineering works on the restoration of soil physical and chemical properties. The analyses are realized in a highly degraded area of 3 km2, located in the lower part of the Loreto catchment (Southern Ecuadorian Andes). First, the soil physical and/or chemical parameters that are most sensitive to track environmental change were evaluated. Second, the role of vegetation on soil restoration was quantified. . Soil samples were taken in sites with different vegetation cover, land use and physiographic position. The following physical and chemical parameters were measured: volumetric water content (θsat, θact), bulk density, pH, texture, organic matter, C and N content. Our first results do not show a clear relationship between volumetric water content at saturation (θsat), bulk density, or C content. The saturation water content does not vary significantly between different sites, or land use types. However, significant differences are found between sites at different stages of restoration; and this for most chemical and physical soil properties. Vegetation cover (%) appears to exert a strong control on the C content in the mineral soils. The highest C values are found in soils of forest plantations with Eucalyptus and Pinus species. These plantations are located in areas that were previously affected by active gullying. Our results show that the establishment of a protective vegetation cover is an important factor in soil restoration.

The Hydromechanics of Vegetation for Slope Stabilization

NASA Astrophysics Data System (ADS)

Mulyono, A.; Subardja, A.; Ekasari, I.; Lailati, M.; Sudirja, R.; Ningrum, W.

2018-02-01

Vegetation is one of the alternative technologies in the prevention of shallow landslide prevention that occurs mostly during the rainy season. The application of plant for slope stabilization is known as bioengineering. Knowledge of the vegetative contribution that can be considered in bioengineering was the hydrological and mechanical aspects (hydromechanical). Hydrological effect of the plant on slope stability is to reduce soil water content through transpiration, interception, and evapotranspiration. The mechanical impact of vegetation on slope stability is to stabilize the slope with mechanical reinforcement of soils through roots. Vegetation water consumption varies depending on the age and density, rainfall factors and soil types. Vegetation with high ability to absorb water from the soil and release into the atmosphere through a transpiration process will reduce the pore water stress and increase slope stability, and vegetation with deep root anchoring and strong root binding was potentially more significant to maintain the stability of the slope.

Impact of vegetation on stability of slopes subjected to rainfall - numerical aspect

NASA Astrophysics Data System (ADS)

Switala, Barbara Maria; Tamagnini, Roberto; Sudan Acharya, Madhu; Wu, Wei

2015-04-01

Recent years brought a significant development of soil bioengineering methods, considered as an ecological and economically effective measure for slope stabilization. This work aims to show the advantages of the soil bioengineering solutions for a slope subjected to a heavy rainfall, with the help of a numerical model, which integrates most of the significant plant and slope features. There are basically two different ways in which vegetation can affect stability of a slope: root reinforcement (mechanical impact) and root water uptake (evapotranspiration). In the numerical model, the first factor is modelled using the Cam-Clay model extended for unsaturated conditions by Tamagnini (2004). The original formulation of a constitutive model is modified by introducing an additional constitutive parameter, which causes an expansion of the yield surface as a consequence of an increase in root mass in a representative soil element. The second factor is the root water uptake, which is defined as a volumetric sink term in the continuity equation of groundwater flow. Water removal from the soil mass causes an increase in suction in the vicinity of the root zone, which leads to an increase in the soil cohesion and provides additional strength to the soil-root composite. The developed numerical model takes into account the above mentioned effects of plants and thus considers the multi-phase nature of the soil-plant-water relationship. Using the developed method, stability of some vegetated and non-vegetated slopes subjected to rainfall are investigated. The performance of each slope is evaluated by the time at which slope failure occurs. Different slope geometries and soil mechanical and hydrological properties are considered. Comparison of the results obtained from the analyses of vegetated and non-vegetated slopes leads to the conclusion, that the use of soil bioengineering methods for slope stabilization can be effective and can significantly delay the occurrence of a rainfall induced landslide. On the contrary, vegetation removal can have serious consequences, especially on steep and forested slopes.

Soil Bioengineering - Major Gully Washout Repair, Silverhill Airfield, Baldwin County, Alabama

DTIC Science & Technology

1991-09-01

commercially available species: Pensacola bahia- grass (Paspalum notatum), bermudagrass ( Cynodon dactylon), Abbruzzi ryegrass (Lobium multiflorum), and...surrounding area was not inhibited. Fertiliz- ing, liming , and mulching recommendations were made after eval- uation of the soil analysis. Two (2) types of

Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering.

PubMed

Hirose, Yuu; Fujisawa, Takatomo; Ohtsubo, Yoshiyuki; Katayama, Mitsunori; Misawa, Naomi; Wakazuki, Sachiko; Shimura, Yohei; Nakamura, Yasukazu; Kawachi, Masanobu; Yoshikawa, Hirofumi; Eki, Toshihiko; Kanesaki, Yu

2016-01-20

To explore the diverse photoreceptors of cyanobacteria, we isolated Nostoc sp. strain NIES-3756 from soil at Mimomi-Park, Chiba, Japan, and determined its complete genome sequence. The Genome consists of one chromosome and two plasmids (total 6,987,571 bp containing no gaps). The NIES-3756 strain carries 7 phytochrome and 12 cyanobacteriochrome genes, which will facilitate the studies of phytochrome-based bioengineering. Copyright © 2015. Published by Elsevier B.V.

Analytical monitoring of soil bioengineering structures in the Tuscan Emilian Apennines of Italy

NASA Astrophysics Data System (ADS)

Selli, Lavinia; Guastini, Enrico

2014-05-01

Soil bioengineering has been an appropriate solution to deal with erosion problems and shallow landslides in the North Apennines, Italy. The objective of our research was a check about critical aspects of soil bioengineering works. We monitored the works that have been carried out in the Tuscan Emilian Apennines by testing the suitability of different plant species and analyzed in detail timber structures of wooden crib walls. Plant species were mainly Salix alba and Salix purpurea that gave good sprouting and survival rates. However, showed some issues in growing on dry and sunny Apennine lands, where other shrubs like Spanish Broom, blackthorn, cornel-tree and Eglantine would be more indicated. The localized analysis on wooden elements has been led gathering parts from the poles and obtaining samples in order to determine their density. The hypothetical initial density of the wood used in the structure has been estimated, then calculating the residual density. This analysis allows us to determine the general condition of the wood, highlighting the structures in worst condition (the one in Pianaccio show a residual density close to 70%, instead of 90% as found on other structures) and those whose degraded wood has undergone the greatest damage (Pianaccio here too, with 50%, followed by Campoferrario - 60% - and by Pian di Favale with 85%, a rather good value for the most degraded wood in the structure).

US Army Medical Research and Development Report.

DTIC Science & Technology

1979-10-01

RI) US ARMY MEDICAL RESEARCH AND DEVELOPMENT REPORT. Colonel/John Jr DTIC JUL 1 5 1980; A USL &MY MEDICAL BIOENGINEERING RESEARCH AND DEVELOPMENT...pollutants in water or soil . Pollutant by-products and breakdown products in water, air or soil will be isolated, characterized, and quantified. Where...determination of selected low-level pollutants io soil and water. Degradation products and secondary pollutants arising from munitions manufacture or pest

Impacts of Greening Materials and Seed Pretreatment on Vegetation Development at an initial stage

NASA Astrophysics Data System (ADS)

Obriejetan, Michael

2015-04-01

Slope protection using greening measures as an integral part of soil-bioengineering is characterized by an increasing demand in research and practice. However, successful greening is a very complex issue due to the vast variety in specific slope characteristics such as morphology, soil properties and environmental factors. Because of practical experience in the greening of slopes and the results of further investigations in small-scale tests, it can be stated that the use of appropriate planting techniques, the quality of the materials used and the proper implementation of potential needed auxiliary materials at difficult locations are seen as key success criteria for sustainable vegetation development. Within this framework small-scale testing series were conducted regarding the influence of specific soil-properties, the use of auxiliary greening materials (fertilizer, mycorrhiza fungi, Bonded fiber matrix (BFM)…), application of different seed-pretreatment methods and influences of specific environmental factors (inclination, seeding depth) on vegetational development in an early phase. The aim of the series is to quantitatively and thus economically optimize the use of different greening-components and seed mixtures for practical application, while ensuring optimal development of vegetation. To quantify the influence of the treatment systems, vegetation cover ratio, biomass production (aboveground and belowground) and the germination of plant seeds served as main criteria for assessing the development in an initial stage. Selected findings for instance show that the admixture of mycorrhiza fungi can increase the cover ratio up to 23 % compared to untreated plots. In addition, pretreatment of seeds showed distinct effects too by shortening germination phase and increasing the capability of producing a higher amount of healthy sprouts. From a bioengineering perspective the results will serve as potential decisive advantage for successful implementation of greening measures.

Functional and taxonomic plant diversity for riverbank protection works: bioengineering techniques close to natural banks and beyond hard engineering.

PubMed

Cavaillé, Paul; Ducasse, Léon; Breton, Vincent; Dommanget, Fanny; Tabacchi, Eric; Evette, André

2015-03-15

Erosion control is a major issue in the Prealps region since piedmont is subject to both intense flood hazards and anthropic pressure. Riverbank protections may have major impacts on local ecosystem functioning and ecological corridor continuity. This study aimed to estimate the effects of the types of riverbank protection technique (from pure riprap to pure bioengineering) on the taxonomic and ecological composition of plant communities in comparison with unmanaged riverbanks as the referential system. Thirty-eight embankments were sampled in the foothills of the French and Swiss Alps. Four distinct riverbank techniques were analyzed and natural young willow stands were chosen as the referential system. At each site, vegetation was sampled along three transects from the waterline to the top of the riverbank. Plant communities were characterized using biological group composition (growth forms and life history, life strategies and distribution in space and time) and functional diversity indices (MFAD, FDc and wFDc). We identified 177 distinct plant species on 38 sites. Higher species richness levels were observed on bioengineered banks (from an average of 12 species recorded on ripraps to 27 species recorded on bioengineered banks) strongly dominated by Salicaceae species, especially for fascine and cribwall banks. Functional analyses of plant communities highlighted significant differences among bank types (p-value: 0.001) for all selected biological groups. Competitive - ruderal strategy, rooting shoots, stems or leaves that lie down or break off, and unisexual - dioecious, as well as pioneer plants and low shrubs (<4 m tall) distinguished bioengineered bank types. Functional diversity indices confirmed these differences among bank types (MFAD: p-value: 0.002; FDc: p-value: 0.003; wFDc: p-value: 0.005). Riprap always showed the lowest levels on functional diversity indices, fascine and cribwall banks were at the medium level and finally mixed and natural banks the highest level. These results confirm the low ecological potential of purely hard engineering techniques and highlight the similarity of bioengineered techniques and unmanaged riverbanks. Copyright © 2014 Elsevier Ltd. All rights reserved.

Bio-Engineering Services to the Developmentally Disabled Adolescent. Final Report.

ERIC Educational Resources Information Center

Mallik, Kalisankar; Yuspeh, Sheldon

A 1-year demonstration project involving 24 developmentally disabled students (9- to 20-years-old) with severe physical limitations was conducted to increase their educational and vocational possibilities by using cost-effective bio-engineering techniques to modify their physical environment and develop improved adaptive devices. Phase I of the…

A review of biotransport education in the 21st century: lessons learned from experts.

PubMed

Banerjee, Rupak K; D'Souza, Gavin A; Rylander, Christopher; Devireddy, Ram

2014-11-01

The field of bioengineering is relatively new and complex including multiple disciplines encompassing areas in science and engineering. Efforts including the National Science Foundation (NSF) sponsored Integrative Graduate Education and Research Traineeship (IGERT) and VaNTH Engineering Research Center in Bioengineering Educational Technologies have been made to establish and disseminate knowledge and proven methods for teaching bioengineering concepts. Further, the summer bioengineering conference (SBC), sponsored by the American Society of Mechanical Engineers' (ASME) Bioengineering Division, was established to provide a meeting place for engineering educators and students having common interests in biological systems. Of the many subdisciplines of bioengineering, biotransport is a key subject that has wide applicability to many issues in engineering, biology, medicine, pharmacology, and environmental science, among others. The absence of standard content, guidelines, and texts needed for teaching biotransport courses to students motivated the Biotransport committee of ASME's Bioengineering Division to establish a biotransport education initiative. Biotransport education workshop sessions were conducted during the SBC 2011, 2012, and 2013 as part of this initiative. The workshop sessions included presentations from experienced faculty covering a spectrum of information from general descriptions of undergraduate biotransport courses to very detailed outlines of graduate courses to successful teaching techniques. A list of texts and references available for teaching biotransport courses at undergraduate and graduate levels has been collated and documented based on the workshop presentations. Further, based on individual teaching experiences and methodologies shared by the presenters, it was noted that active learning techniques, including cooperative and collaborative learning, can be useful for teaching undergraduate courses while problem based learning (PBL) can be a beneficial method for graduate courses. The outcomes of the education initiative will help produce students who are knowledgeable in the subject of biotransport, facile in applying biotransport concepts for solving problems in various application areas, and comfortable with their own abilities as life-long learners.

The junctional epithelium originates from the odontogenic epithelium of an erupted tooth.

PubMed

Yajima-Himuro, Sara; Oshima, Masamitsu; Yamamoto, Gou; Ogawa, Miho; Furuya, Madoka; Tanaka, Junichi; Nishii, Kousuke; Mishima, Kenji; Tachikawa, Tetsuhiko; Tsuji, Takashi; Yamamoto, Matsuo

2014-05-02

The junctional epithelium (JE) is an epithelial component that is directly attached to the tooth surface and has a protective function against periodontal diseases. In this study, we determined the origin of the JE using a bioengineered tooth technique. We transplanted the bioengineered tooth germ into the alveolar bone with an epithelial component that expressed green fluorescence protein. The reduced enamel epithelium from the bioengineered tooth fused with the oral epithelium, and the JE was apparently formed around the bioengineered tooth 50 days after transplantation. Importantly, the JE exhibited green fluorescence for at least 140 days after transplantation, suggesting that the JE was not replaced by oral epithelium. Therefore, our results demonstrated that the origin of the JE was the odontogenic epithelium, and odontogenic epithelium-derived JE was maintained for a relatively long period.

The junctional epithelium originates from the odontogenic epithelium of an erupted tooth

PubMed Central

Yajima-Himuro, Sara; Oshima, Masamitsu; Yamamoto, Gou; Ogawa, Miho; Furuya, Madoka; Tanaka, Junichi; Nishii, Kousuke; Mishima, Kenji; Tachikawa, Tetsuhiko; Tsuji, Takashi; Yamamoto, Matsuo

2014-01-01

The junctional epithelium (JE) is an epithelial component that is directly attached to the tooth surface and has a protective function against periodontal diseases. In this study, we determined the origin of the JE using a bioengineered tooth technique. We transplanted the bioengineered tooth germ into the alveolar bone with an epithelial component that expressed green fluorescence protein. The reduced enamel epithelium from the bioengineered tooth fused with the oral epithelium, and the JE was apparently formed around the bioengineered tooth 50 days after transplantation. Importantly, the JE exhibited green fluorescence for at least 140 days after transplantation, suggesting that the JE was not replaced by oral epithelium. Therefore, our results demonstrated that the origin of the JE was the odontogenic epithelium, and odontogenic epithelium-derived JE was maintained for a relatively long period. PMID:24785116

New methods to study the composition and structure of the extracellular matrix in natural and bioengineered tissues

PubMed Central

Schiller, Jürgen; Huster, Daniel

2012-01-01

The extracellular matrix (ECM) comprises a gel of numerous biopolymers that occurs in a multitude of biological tissues. The ECM provides the basic support and mechanical strength of skeletal tissue and is responsible for shape retention. At the same time, the ECM is responsible for the viscoelastic properties and the elasticity of soft tissues. As expected, there are several important diseases that affect and degenerate the ECM with severe consequences for its properties. Bioengineering is a promising approach to support the regenerative capacity of the body. Unfortunately, the biomechanical properties of bioengineered ECM often only poorly meet the standards of their native counterparts. Many bioengineered tissues are characterized by an increased glycosaminoglycan (GAG) but decreased collagen content. This leads to an enhanced water content that strongly alters the viscoelastic and thus the biomechanical properties. Therefore, compositional analysis is important to estimate the tissue quality. We will show that nuclear magnetic resonance (NMR) spectroscopy and soft-ionization mass spectrometry (MS) represent useful techniques for ECM research both in natural and bioengineered tissues. Both methods are strongly complimentary: while MS techniques such as matrix-assisted laser desorption and ionization (MALDI) are excellent and very sensitive analytical tools to determine the collagen and the GAG contents of tissues, NMR spectroscopy provides insight into the molecular architecture of the ECM, its dynamics and other important parameters such as the water content of the tissue as well as the diffusion of molecules within the ECM. PMID:23507863

A pull out test to compare two riparian species, Phyllanthus sellowianus and Sebastiania schottiana in terms of root anchorage ability

NASA Astrophysics Data System (ADS)

Hörbinger, Stephan; Sutili, Fabricio J.; Rauch, Hans Peter

2013-04-01

Soil bioengineering has become manifold applied in large parts of Brazil in recent years. The first projects were realized in the region of Rio Grande do Sul within river stabilization works to protect agricultural land of small regional farmers. As result of research work the species Sebastiania schottiana and Phyllanthus sellowianus showed very adequate morpho-physiological properties and seem to be appropriate for the use in soil bioengineering. The aim of the present study was to examine a still unknown but crucial factor, the resistance of the above mentioned species against being pulled out. The pull out resistance is an indicator for the stability of the soil-root matrix and expresses the stabilizing effects of plants on soil. Furthermore it is an applicable index to compare the qualification of the species to be used in soil bioengineering works. Another objective was to investigate plant characteristics, which correlate to the pull out resistance of the investigated species, to be able to draft up efficient plant strategies for future restoration works on eroded river embankments. For the experiment a special apparatus was designed, which enables to implement a pull out process with a constant rate and generate a graph of the plants resistance force versus its displacement. P. sellowianus showed a significant higher resistance against being pulled out than S. schottiana. The analyses of root and shoot properties of P. sellowianus showed more favorable morpho-physiological properties in terms of pull out resistance, a bigger amount of biomass, both above and below ground and also a higher amount of anchorage. The Cross-Sectional-Areas (CSA) of the shoots showed in both species the strongest correlation of the investigated shoot and root properties with the maximum resistance against being pulled out. Thus it can be concluded that the CSA can be used as a value to assess the stabilization effects of the plants. The experiments showed that some root and shoot properties do have a great impact on the pullout strength and that P. sellowianus can be preferred for slope stabilization works as it exhibits outstanding resistance against being pulled out.

Transducer technology transfer to bio-engineering applications. [aerospace stress transducer for heart function analysis

NASA Technical Reports Server (NTRS)

Duran, E. N.; Lewis, G. W.; Feldstein, C.; Corday, E.; Meerbaum, S.; Lang, T.

1973-01-01

The results of a technology transfer of a miniature unidirectional stress transducer, developed for experimental stress analysis in the aerospace field, to applications in bioengineering are reported. By modification of the basic design and innovations in attachment techniques, the transducer was successfully used in vivo on the myocardium of large dogs to record the change in contractile force due to coronary occlusion, reperfusion, and intervention.

Testing compression strength of wood logs by drilling resistance

NASA Astrophysics Data System (ADS)

Kalny, Gerda; Rados, Kristijan; Rauch, Hans Peter

2017-04-01

Soil bioengineering is a construction technique using biological components for hydraulic and civil engineering solutions, based on the application of living plants and other auxiliary materials including among others log wood. Considering the reliability of the construction it is important to know about the durability and the degradation process of the wooden logs to estimate and retain the integral performance of a soil bioengineering system. An important performance indicator is the compression strength, but this parameter is not easy to examine by non-destructive methods. The Rinntech Resistograph is an instrument to measure the drilling resistance by a 3 mm wide needle in a wooden log. It is a quasi-non-destructive method as the remaining hole has no weakening effects to the wood. This is an easy procedure but result in values, hard to interpret. To assign drilling resistance values to specific compression strengths, wooden specimens were tested in an experiment and analysed with the Resistograph. Afterwards compression tests were done at the same specimens. This should allow an easier interpretation of drilling resistance curves in future. For detailed analyses specimens were investigated by means of branch inclusions, cracks and distances between annual rings. Wood specimens are tested perpendicular to the grain. First results show a correlation between drilling resistance and compression strength by using the mean drilling resistance, average width of the annual rings and the mean range of the minima and maxima values as factors for the drilling resistance. The extended limit of proportionality, the offset yield strength and the maximum strength were taken as parameters for compression strength. Further investigations at a second point in time strengthen these results.

Life-size experimentation of bioengineering for sedimentation control in eroded marly gullies (Francon catchment, Draix, France)

NASA Astrophysics Data System (ADS)

Rey, F.; Labonne, S.; Mathys, N.; Puëch, C.; Jardin, J. L.

2009-04-01

On marly eroded terrains of the French Southern Alps, many researches are undertaken in order to better understand the role of vegetation and bioengineering works on erosion and sedimentation control. These researches in particular made it possible to develop tools of ecological engineering bound for the practitioners in order to conceive operations for mitigation of damage related to soil erosion. In particular they are methods of diagnosis and strategies for action with bioengineering techniques. These tools must make it possible to guide the choice of the gullies to be rehabilitated and that of the types of works of vegetalisation to be used, in particular via the establishment and the use of a gully typology. Before passing to phases of real use of these tools through expertise, as this is today considered on the scale of the large catchment area of the Durance in France (4000 km²), it appeared convenient to carry out a life-size test of application of these tools. This test was carried out on the marly catchment of Francon (73 ha), which belongs to the experimental complex of Draix (04), labellized Observatoire of Research in Environment (ORE) and of which the objectives are to improve knowledge on the formation of floods and bedload transport in small mountainous marly catchments. On this basin, 30 gullies, representing a total surface area of approximately 20 ha, were thus identified like "ecologically suitable for rehabilitation", i.e. on which it appeared possible and convenient to install bioengineering works. This test thus made it possible to check the relevance of the tools proposed to apply an action with bioengineering. An ecological operation of rehabilitation of this basin, carried out jointly with the French ‘Office National des Forêts (ONF)', was then carried out in April 2008 in accordance with the test results. It consisted of the construction of 672 bioengineering works, namely of "brush layers and brush mats of cuttings on deadwood microdams", implementing in particular the use of 25.000 cuttings of willows (Salix purpurea and S. incana). Beyond its role of validation of former results, this device is used as experimental site in order to improve the effectiveness of the bioengineering works for the sustainable retention of sediment, in particular by checking their resistance (damage on the works) and their performance (resprout and survival of the cuttings, sediment trapping) during extreme climatic disturbances. In particular, it must make it possible to study the effects of changing of spatial scales, still badly perceived, by observing if the effectiveness of local actions with bioengineering (inside small gullies of 1 ha) indeed reflects the reduction of sediment yield at the exit of larger catchments (about the km²). For this, measurements are made on 363 works in 26 gullies. The first results (2008) especially reveal: i/ a very good resistance of the works: 19 % of the works are partially damaged on less than 1/3 of their surface area, the highest rainfall intensity being 28 mm/h during 1 h; ii/ a total rate of cutting resprout of 97% (99% for S. purpurea and 94% for S. incana), the total precipitation of 2008 being 803 mm; iii/ an average trapping of 0,1 m3 of sediment per work, the latter yet still little filled. Lastly, this catchment area will also serve as "demonstration site" with the attention of the practitioners, managers and decision makers of the actions of erosion and sedimentation control.

Report of the Panel on Pre-Professional Training in the Agricultural Sciences.

ERIC Educational Resources Information Center

Commission on Undergraduate Education in the Biological Sciences, Washington, DC.

Summaries of the recommendations made by action committees established by the Panel on Pre-Professional Training in the Agricultural Sciences are made under the headings "Biological Subject Matter,""Mathematics," and "Physics." The action committees in Animal Sciences, Bioengineering, Food Sciences, Natural Resources, Plant and Soil Sciences, and…

Bioengineering Spin-Offs from Dynamical Systems Theory

NASA Astrophysics Data System (ADS)

Collins, J. J.

1997-03-01

Recently, there has been considerable interest in applying concepts and techniques from dynamical systems and statistical physics to physiological systems. In this talk, we present work dealing which two active topics in this area: stochastic resonance and (2) chaos control. Stochastic resonance is a phenomenon wherein the response of nonlinear system to a weak input signal is optimally enhanced by the presence of a particular level of noise. Here we demonstrate that noise-based techniques can be used to lower sensory detection thresholds in humans. We discuss how from a bioengineering and clinical standpoint, these developments may be particularly relevant for individuals with elevated sensory thresholds, such as older adults and patients with peripheral neuropathy. Chaos control techniques have been applied to a wide range of experimental systems, including biological preparations. The application of chaos control to biological systems has led to speculations that these methods may be clinically useful. Here we demonstrate that the principles of chaos control can be utilized to stabilize underlying unstable periodic orbits in non-chaotic biological systems. We discuss how from a bioengineering and clinical standpoint, these developments may be important for suppressing or eliminating certain types of cardiac arrhythmias.

Analysis of slope stabilization by soil bioengineering method

NASA Astrophysics Data System (ADS)

Switala, Barbara Maria; Wu, Wei

2013-04-01

The aim of the project is to create a numerical model which will include the impact of vegetation on the slope stability analysis, considering both mechanical and hydrological factors. This will enrich the current knowledge about how roots reinforce the soil layers on the slope and how it influences the increase of shear strength of the soil. This has to be combined together with hydrological effects caused by evapotranspiration: modified soil moisture regime, dissipation of excess pore pressure and established matric suction. Coupled analyses (mechanical and hydrological) are rarely conducted, or only outdated models are used, which leads to overestimation of the additional shear strength of soil. That is why there is a need to support this branch of landslide hazard assessment and develop a new model. This research will help to raise awareness, that soil bioengineering methods of slope stabilization can in some cases be more appropriate and less expensive than traditional methods. As an input to the model, the appropriate slope geometry and soil properties have to be chosen. It is also important to consider different plant types and root properties, as well as different levels of groundwater table. To assess the effect of evapotranspiration it is necessary to know the geographical location of the slope and the weather conditions in the chosen region. The final output of the model, which will help to quantitatively assess the impact of vegetation on the slope stability, is the factor of safety (FOS) for vegetated slope for different types of soil and degrees of saturation. Results may then be compared with different conditions and factors of safety, calculated for the corresponding non-vegetated slope. It will be possible to specify the most favorable and unfavorable conditions. Moreover, the calculations provide also information on changes of cohesion, caused by mechanical and hydrological effects, as well as the change in the friction angle of soil.

Fabrication of micro-alginate gel tubes utilizing micro-gelatin fibers

NASA Astrophysics Data System (ADS)

Sakaguchi, Katsuhisa; Arai, Takafumi; Shimizu, Tatsuya; Umezu, Shinjiro

2017-05-01

Tissues engineered utilizing biofabrication techniques have recently been the focus of much attention, because these bioengineered tissues have great potential to improve the quality of life of patients with various hard-to-treat diseases. Most tissues contain micro-tubular structures including blood vessels, lymphatic vessels, and bile canaliculus. Therefore, we bioengineered a micro diameter tube using alginate gel to coat the core gelatin gel. Micro-gelatin fibers were fabricated by the coacervation method and then coated with a very thin alginate gel layer by dipping. A micro diameter alginate tube was produced by dissolving the core gelatin gel. Consequently, these procedures led to the formation of micro-alginate gel tubes of various shapes and sizes. This biofabrication technique should contribute to tissue engineering research fields.

The potential of 3D printing in urological research and patient care.

PubMed

Colaco, Marc; Igel, Daniel A; Atala, Anthony

2018-04-01

3D printing is an evolving technology that enables the creation of unique organic and inorganic structures with high precision. In urology, the technology has demonstrated potential uses in both patient and clinician education as well as in clinical practice. The four major techniques used for 3D printing are inkjet printing, extrusion printing, laser sintering, and stereolithography. Each of these techniques can be applied to the production of models for education and surgical planning, prosthetic construction, and tissue bioengineering. Bioengineering is potentially the most important application of 3D printing, as the ability to produce functional organic constructs might, in the future, enable urologists to replicate and replace abnormal tissues with neo-organs, improving patient survival and quality of life.

The Trajectories of Saccadic Eye Movements.

ERIC Educational Resources Information Center

Bahill, A. Terry; Stark, Lawrence

1979-01-01

Investigates the trajectories of saccadic eye movements, the control signals of the eye, and nature of the mechanisms that generate them, using the techniques of bioengineering in collecting the data. (GA)

Living part on soil bioengineering structures in Appennino Tosco-emiliano

NASA Astrophysics Data System (ADS)

Guastini, Enrico; Preti, Federico; Dani, Andrea

2014-05-01

From analisys headed up in soil bioengineered areas in different parts of Tuscany, the suitest root systems in slope stabilization turn out to be those spreading from seed-born plants, while adventitious roots from cuttings are often absent in the part more distant from the neck, and in some cases are insufficient to grant life support just in case of minor stress conditions. Genus Alnus shows it's adaptation capability to restore initial restoration steps and to create renovation prerequisites for other species through ammending litter production and symbiosis for nitrogen fixation with Frankia genus bacteria; other similar symbiosis (with Rhizobium and fungi) are carried out by Robinia pseudacacia. Soil fecundity increase is confirmed by the following entrance of more demanding species, as Ostrya carpinifolia and Acer pseudoplatanus at the tree level, Urtica dioica and Rubus Ulmifolius (nitrophilouses) at grass level. In the project phase it ought to imagine a well-structured implant, including rooted plants, cuttings and posibly a seed mix of colonising species aiming to form a germplasm on the structure itself in order to sprout whenever the local conditions allow it. Verifying that many after developed species came from ornithocore dissemination (Ficus carica, Pinus spp., Rosa canina, Sambucus nigra), lead to toughts about bedding out bird-attracting species on structures in order to realise a faster (and maybe more complex) succession development. This higher velocity could grant in a shorter period the production of a root mass spread in a more disomogeneous and complex pattern than that deriving from cuttings disposed in the traditional way; such a variability could allow a better interaction with other biological factors in the soil (bacteria, fungi, nematodes, ...) that are important for the plant nutrient cicle (Ohsowski et al., 2012) and then the constituion of an articulate, long-term system.

Surfactant irritation: in vitro corneosurfametry and in vivo bioengineering.

PubMed

Gabard, B; Chatelain, E; Bieli, E; Haas, S

2001-02-01

Irritant reactions to surfactants, cleansing products, soaps and detergents are common in clinical and occupational dermatology. Mildness has become a major benefit claimed, and testing for mildness now ranks among the first concerns of the manufacturing industry. A wealth of publications deals with this problem, trying to improve the methodology, reduce the costs of testing and facilitate decision-making. Differences in vivo can be measured clinically and/or instrumentally. This is difficult, as commercially available products are generally safe to use and none are harsh in the absolute sense. Nineteen different products (syndets, shampoos, personal cleansers), all claiming to be mild, were tested in vitro by a newly introduced method, corneosurfametry. For evaluating the aggressiveness of the products, the calculation of an index of irritation (IOI) was proposed. A concentration-effect curve of sodium lauryl sulfate (SLS) as standard and model surfactant was obtained. Some of the products were further tested in vivo with a flex wash test and with a soap chamber test and compared to SLS. Bioengineering methods (transepidermal water loss TEWL, skin color) were used to evaluate the results. The results of the corneosurfametry allowed us to classify the products in three categories, with increasing aggressiveness towards the stratum corneum, according to their IOIs. The in vivo tests were not able to discriminate between the products, but ranks from the results of the bioengineering measurements showed a good correlation between TEWL changes, but not between colour changes, and IOIs from corneosurfametry. Corneosurfametry emerged as a simple, low-cost and fast method for ranking commercial products according to their mildness. However, the skin bioengineering techniques showed that some products could lead to skin reactions, such as erythema, that could not be detected by the in vitro technique.

Stability Thresholds and Performance Standards for Flexible Lining Materials in Channel and Slope Restoration Applications

DTIC Science & Technology

2012-07-01

common industry term Bioengineering - Structural applications using vegetation- seed, plants, live cuttings and/or wood NRCS, common industry term...downstream, the use of non-biodegradable products (geosynthetics, plastics , rebar, metal anchors, etc.) in natural settings, and limited benefits to or...entanglement until vegetation establishment and adherence of the TRM to the soil surface (ECTC 2008). Stitch- bonded, geosynthetic extruded and fused TRMs

Reconstructive Surgery of Auricular Defects: An Overview.

PubMed

Ebrahimi, Ali; Kazemi, Alireza; Rasouli, Hamid Reza; Kazemi, Maryam; Kalantar Motamedi, Mohammad Hosein

2015-11-01

Despite the ongoing advances in surgical procedures and promising progress in bioengineering techniques, auricular reconstruction remains a significant challenge in plastic surgery. There are different causes for acquired auricular defects, including trauma, tumor ablation and burns. The management options for upper, middle and lower third auricular defects are briefly reviewed in the current paper. Original research papers investigating the plastic surgeons, otolaryngologists and maxillofacial surgeons in approaching the complicated issue of auricular reconstruction published from January 1995 to December 2014 were aggregated and used in the current study. Utilizing autologous stem cell populations to treat craniofacial defects is a promising field of ongoing investigations. Studies show that cartilage stem/progenitor cells (CSPCs) are highly chondrogenic and can produce elastic reconstructive material with long-term tissue restoration. Auricular reconstruction surgery is a challenging plastic procedure that requires great expertise and expert knowledge of the various techniques available. Novel techniques in the fields of reconstructive bioengineering and regenerative medicine are promising but further research is required before widespread clinical application.

Update on Renal Replacement Therapy: Implantable Artificial Devices and Bioengineered Organs.

PubMed

Attanasio, Chiara; Latancia, Marcela T; Otterbein, Leo E; Netti, Paolo A

2016-08-01

Recent advances in the fields of artificial organs and regenerative medicine are now joining forces in the areas of organ transplantation and bioengineering to solve continued challenges for patients with end-stage renal disease. The waiting lists for those needing a transplant continue to exceed demand. Dialysis, while effective, brings different challenges, including quality of life and susceptibility to infection. Unfortunately, the majority of research outputs are far from delivering satisfactory solutions. Current efforts are focused on providing a self-standing device able to recapitulate kidney function. In this review, we focus on two remarkable innovations that may offer significant clinical impact in the field of renal replacement therapy: the implantable artificial renal assist device (RAD) and the transplantable bioengineered kidney. The artificial RAD strategy utilizes micromachining techniques to fabricate a biohybrid system able to mimic renal morphology and function. The current trend in kidney bioengineering exploits the structure of the native organ to produce a kidney that is ready to be transplanted. Although these two systems stem from different technological approaches, they are both designed to be implantable, long lasting, and free standing to allow patients with kidney failure to be autonomous. However, for both of them, there are relevant issues that must be addressed before translation into clinical use and these are discussed in this review.

Induced pluripotent stem cells for regenerative medicine.

PubMed

Hirschi, Karen K; Li, Song; Roy, Krishnendu

2014-07-11

With the discovery of induced pluripotent stem (iPS) cells, it is now possible to convert differentiated somatic cells into multipotent stem cells that have the capacity to generate all cell types of adult tissues. Thus, there is a wide variety of applications for this technology, including regenerative medicine, in vitro disease modeling, and drug screening/discovery. Although biological and biochemical techniques have been well established for cell reprogramming, bioengineering technologies offer novel tools for the reprogramming, expansion, isolation, and differentiation of iPS cells. In this article, we review these bioengineering approaches for the derivation and manipulation of iPS cells and focus on their relevance to regenerative medicine.

Multiscale assembly for tissue engineering and regenerative medicine

PubMed Central

Inci, Fatih; Tasoglu, Savas; Erkmen, Burcu; Demirci, Utkan

2015-01-01

Our understanding of cell biology and its integration with materials science has led to technological innovations in the bioengineering of tissue-mimicking grafts that can be utilized in clinical and pharmaceutical applications. Bio-engineering of native-like multiscale building blocks provides refined control over the cellular microenvironment, thus enabling functional tissues. In this review, we focus on assembling building blocks from the biomolecular level to the millimeter scale. We also provide an overview of techniques for assembling molecules, cells, spheroids, and microgels and achieving bottom-up tissue engineering. Additionally, we discuss driving mechanisms for self- and guided assembly to create micro-to-macro scale tissue structures. PMID:25796488

Sensitivity analysis of a new dual-porosity hydroloigcal model coupled with the SOSlope model for the numerical simulations of rainfall triggered shallow landslides.

NASA Astrophysics Data System (ADS)

Schwarz, Massimiliano; Cohen, Denis

2017-04-01

Morphology and extent of hydrological pathways, in combination with the spatio-temporal variability of rainfall events and the heterogeneities of hydro-mechanical properties of soils, has a major impact on the hydrological conditions that locally determine the triggering of shallow landslides. The coupling of these processes at different spatial scales is an enormous challenge for slope stability modeling at the catchment scale. In this work we present a sensitivity analysis of a new dual-porosity hydrological model implemented in the hydro-mechanical model SOSlope for the modeling of shallow landslides on vegetated hillslopes. The proposed model links the calculation of the saturation dynamic of preferential flow-paths based on hydrological and topographical characteristics of the landscape to the hydro-mechanical behavior of the soil along a potential failure surface due to the changes of soil matrix saturation. Furthermore, the hydro-mechanical changes of soil conditions are linked to the local stress-strain properties of the (rooted-)soil that ultimately determine the force redistribution and related deformations at the hillslope scale. The model considers forces to be redistributed through three types of solicitations: tension, compression, and shearing. The present analysis shows how the conditions of deformation due to the passive earth pressure mobilized at the toe of the landslide are particularly important in defining the timing and extension of shallow landslides. The model also shows that, in densely rooted hillslopes, lateral force redistribution under tension through the root-network may substantially contribute to stabilizing slopes, avoiding crack formation and large deformations. The results of the sensitivity analysis are discussed in the context of protection forest management and bioengineering techniques.

The Control of Invasive Knotweed Species (Fallopia sp.). Research Experiences from Austria

NASA Astrophysics Data System (ADS)

Lammeranner, Walter; Schmidt, Christina; Eitler, Manuela; Natascha, Steinbauer

2013-04-01

The alien plant species Fallopia japonica (Japanese Knotweed), Fallopia sachalinensis (Sakhalin Knotweed) and the clonal knotweed hybrid Fallopia × bohemica are invasive plant species which spread out within Europe. They often form dense stands along Rivers and have negative impacts on biodiversity and ecosystem functioning and also threaten the stability of river banks. Due to their life form, vitality and their enormous ability to regenerate themselves, they are extremely hard to fight. The control measurements against Fallopia species are therefore complicated and often do not have the desired results. Our research tried two approaches to deal with these invasive plant species. The first approach was the use of soil bioengineering techniques which have considerable potential for the management of Fallopia. In our study at the river Schwechat (Lower Austria) we tested two soil bioengineering methods for the control of Fallopia. The first method was the use of living brush mattresses with willows (Salix sp.) to fight the growth of Fallopia species. Within a second method a black liner was used in combination with willow cuttings. After cutting the Fallopia stands the liner was applied to the river bank and fixed with living willow cutting to the surface. The two areas were compared to untreated river bank areas. At several points of time we compared the aboveground response (number of shoots, basal shoot diameters, plant heights, number of stems, aboveground biomass). Additionally the aboveground plant parameters of the willows were measured. In a second approach it was tested if Fallopia can be suppressed or even exterminated if they are submerged for longer time periods. For the experiments Fallopia rhizomes were planted in plastic containers. After a certain growing period, the plants were cut and documented quantitatively by the measurements of shoot lengths, shoot diameters and aboveground biomass. After the first harvest the containers were flooded with water over a period of 1 to 9 weeks. After flooding the regrowth of Fallopia was observed. Our contribution describes the methods used and shows the results of the studies.

Diazotrophic Community Structure and Function in Two Successional Stages of Biological Soil Crusts from the Colorado Plateau and Chihuahuan Desert

USGS Publications Warehouse

Yeager, C.M.; Kornosky, J.L.; Housman, D.C.; Grote, E.E.; Belnap, J.; Kuske, C.R.

2004-01-01

The objective of this study was to characterize the community structure and activity of N2-fixing microorganisms in mature and poorly developed biological soil crusts from both the Colorado Plateau and Chihuahuan Desert. Nitrogenase activity was approximately 10 and 2.5 times higher in mature crusts than in poorly developed crusts at the Colorado Plateau site and Chihuahuan Desert site, respectively. Analysis of nifH sequences by clone sequencing and the terminal restriction fragment length polymorphism technique indicated that the crust diazotrophic community was 80 to 90% heterocystous cyanobacteria most closely related to Nostoc spp. and that the composition of N2-fixing species did not vary significantly between the poorly developed and mature crusts at either site. In contrast, the abundance of nifH sequences was approximately 7.5 times greater (per microgram of total DNA) in mature crusts than in poorly developed crusts at a given site as measured by quantitative PCR. 16S rRNA gene clone sequencing and microscopic analysis of the cyanobacterial community within both crust types demonstrated a transition from a Microcoleus vaginatus-dominated, poorly developed crust to mature crusts harboring a greater percentage of Nostoc and Scytonema spp. We hypothesize that ecological factors, such as soil instability and water stress, may constrain the growth of N2-fixing microorganisms at our study sites and that the transition to a mature, nitrogen-producing crust initially requires bioengineering of the surface microenvironment by Microcoleus vaginatus.

77 FR 58146 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-19

... Biomedical Imaging and Bioengineering; Notice of Closed Meeting Pursuant to section 10(d) of the Federal... Institute of Biomedical Imaging and Bioengineering Special Emphasis Panel; Scientific Conference Award... Officer, National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, 6707...

The Status of Fluid Mechanics in Bioengineering Curricula.

ERIC Educational Resources Information Center

Miller, Gerald E.; Hyman, William A.

1981-01-01

Describes the status of fluid mechanics courses in bioengineering curricula. A survey of institutions offering bioengineering degrees indicates that over half do not require fluid mechanics courses. Suggests increasing number of mechanics courses to increase the quality of bioengineering students and to prepare students for graduate work and more…

REMOTE SENSING TECHNIQUES FOR MONITORING GENETICALLY ENGINEERED CROP CULTIVATION

EPA Science Inventory

Crops bioengineered to contain toxins derived from Bacillus thuringensis (Bt) are under regulatory scrutiny by USEPA under the FIFRA legislation. The agency has declared these crops to be "in the public good" based on the reduced use of pesticides required for management of these...

Reprogramming somatic cell differentiation and the Hayflick Limit: contrasting two modern molecular bioengineering aims and their impact on the future of mankind.

PubMed

Sills, E S; Takeuchi, T; Rosenwaks, Z; Palermo, G D

2001-08-01

The molecular biology of human cloning and aging research depend on the closely related laboratory techniques supported by a thorough understanding of cell-signaling processes. Unfortunately, the link between these two research fields has received only marginal attention in the lay press. Cloning is possible when somatic cell differentiation is successfully reprogrammed, and clinical control of cellular senescence depends on a proper reconfiguration of the predetermined number of divisions permitted during the cell life-cycle (the so-called "Hayflick Limit"). In this paper, we discuss these two concepts and compare the impact likely to be associated with bioengineering studies that facilitate both human cloning and longevity therapy.

78 FR 107 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2013-01-02

... Biomedical Imaging and Bioengineering; Notice of Closed Meeting Pursuant to section 10(d) of the Federal... Biomedical Imaging and Bioengineering Special Emphasis Panel, 2013-05 ZEB1 OSR-D(M1)S/Low- Dose CT Imaging..., National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, 6707 Democracy...

Some History of Nitrates

NASA Astrophysics Data System (ADS)

Barnum, Dennis W.

2003-12-01

The history of saltpeter is an interesting combination of chemistry, world trade, technology, politics, and warfare. Originally it was obtained from the dirt floors of stables, sheep pens, pigeon houses, caverns, and even peasants' cottages; any place manure and refuse accumulated in soil under dry conditions. When these sources became inadequate to meet demand it was manufactured on saltpeter plantations, located in dry climates, where piles of dirt, limestone, and manure were allowed to stand for three to five years while soil microbes oxidized the nitrogen to nitrate—an example of early bioengineering. Extensive deposits of sodium nitrate were mined in the Atacama Desert in northern Chile from 1830 until the mid 1920s when the mines were displaced by the Haber Ostwald process.

77 FR 19675 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2012-04-02

... Biomedical Imaging and Bioengineering; Notice of Meeting Pursuant to section 10(d) of the Federal Advisory... Council for Biomedical Imaging and Bioengineering. The meeting will be open to the public as indicated... for Biomedical Imaging and Bioengineering, NACBIB May, 2012. Date: May 21, 2012. Open: 9 a.m. to 1 p.m...

[Application of fluid mechanics and simulation: urinary tract and ureteral catheters.

PubMed

Gómez-Blanco, J C; Martínez-Reina, J; Cruz, D; Blas Pagador, J; Sánchez-Margallo, F M; Soria, F

2016-10-01

The mechanics of urine during its transport from the renal pelvis to the bladder is of great interest for urologists. The knowledge of the different physical variables and their interrelationship, both in physiologic movements and pathologies, will help a better diagnosis and treatment. The objective of this chapter is to show the physics principles and their most relevant basic relations in urine transport, and to bring them over the clinical world. For that, we explain the movement of urine during peristalsis, ureteral obstruction and in a ureter with a stent. This explanation is based in two tools used in bioengineering: the theoretical analysis through the Theory of concontinuous media and Ffluid mechanics and computational simulation that offers a practical solution for each scenario. Moreover, we review other contributions of bioengineering to the field of Urology, such as physical simulation or additive and subtractive manufacturing techniques. Finally, we list the current limitations for these tools and the technological development lines with more future projection. In this chapter we aim to help urologists to understand some important concepts of bioengineering, promoting multidisciplinary cooperation to offer complementary tools that help in diagnosis and treatment of diseases.

Biogenic synthesized nanoparticles and their applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Singh, Abhijeet, E-mail: abhijeet.singh@jaipur.manipal.edu; Sharma, Madan Mohan

In the present scenario, there are growing concerns over the potential impacts of bioengineered nanoparticles in the health sector. However, our understanding of how bioengineered nanoparticles may affect organisms within natural ecosystems, lags far behind our rapidly increasing ability to engineer novel nanoparticles. To date, research on the biological impacts of bioengineered nanoparticles has primarily consisted of controlled lab studies of model organisms with single species in culture media. Here, we described a cost effective and environment friendly technique for green synthesis of silver nanoparticles. Silver nanoparticles were successfully synthesized from 1 mM AgNO{sub 3} via a green synthesis processmore » using leaf extract as reducing as well as capping agent. Nanoparticles were characterized with the help of UV–vis absorption spectroscopy, X-ray diffraction and TEM analysis which revealed the size of nanoparticles of 30-40 nm size. Further the nanoparticles synthesized by green route are found highly toxic against pathogenic bacteria and plant pathogenic fungi viz. Escherichia coli, Pseudomonas syringae and Sclerotiniasclerotiorum. The most important outcome of this work will be the development of value-added products and protection of human health from pathogens viz., bacteria, virus, fungi etc.« less

Monitoring of a landslide stabilized with bioengineering techniques in 1997, northern Tuscany. Vegetation development analysis and state of preservation of wood

NASA Astrophysics Data System (ADS)

Errico, Alessandro; Giambastiani, Yamuna; Guastini, Enrico; Dani, Andrea

2014-05-01

In 1996 a large landslide occurred in the chestnut grove nearby Pomezzana, a small town situated in the mountains of northern Tuscany, Italy. No damages were registered to population nor infrastructures, but the residual risks deriving from the effects of the event needed to be solved by means of a stabilization of the ground and reforestation. The choice has been found among bioengineering techniques, which perfectly fit in the ecosystem, landscape and the economic budgets of mountain engineering. A complex project has been implemented, using several different typologies of wooden structures, combined with rooted plants, wooden cuttings and grass seeding on the slopes. The most of the stabilization effect was assigned to the cribwalls, construct using local chestnut wood. Works ended in 1997. In 2013, 16 years later, a monitoring on the vegetation development and the state of preservation of the wood in cribwalls has been conducted. On vegetation, it has been surveyed the composition of species, diameter and height. Moreover, by means of a GPS device, the position of every plant has been registered and transcribed on GIS softwares for elaboration. The conservation of wood in cribwalls has been checked using a Resistograph, drilling each structure in three areas (at the two ends and roughly in the middle) and testing every order. The root systems of two plants have been excavated to calculate the RAR value for different depths, in order to quantify the contribution of roots in land stabilization. The soil has been also analyzed to determine structure, texture and geotechnical properties. Combining these data with the topographic survey conducted by the designers of the work, it has been possible to calculate the Safety Factor for landslide triggering using the model Slip4ex. The results show a good preservation rate of wooden structures, combined with a high contribution of roots in stabilization. The registered tree species (mainly Alnus glutinosa) were almost all coming from the nearby forests, while there are just small tracks of the original plantation.

Hair organ regeneration via the bioengineered hair follicular unit transplantation

PubMed Central

Asakawa, Kyosuke; Toyoshima, Koh-ei; Ishibashi, Naoko; Tobe, Hirofumi; Iwadate, Ayako; Kanayama, Tatsuya; Hasegawa, Tomoko; Nakao, Kazuhisa; Toki, Hiroshi; Noguchi, Shotaro; Ogawa, Miho; Sato, Akio; Tsuji, Takashi

2012-01-01

Organ regenerative therapy aims to reproduce fully functional organs to replace organs that have been lost or damaged as a result of disease, injury, or aging. For the fully functional regeneration of ectodermal organs, a concept has been proposed in which a bioengineered organ is developed by reproducing the embryonic processes of organogenesis. Here, we show that a bioengineered hair follicle germ, which was reconstituted with embryonic skin-derived epithelial and mesenchymal cells and ectopically transplanted, was able to develop histologically correct hair follicles. The bioengineered hair follicles properly connected to the host skin epithelium by intracutaneous transplantation and reproduced the stem cell niche and hair cycles. The bioengineered hair follicles also autonomously connected with nerves and the arrector pili muscle at the permanent region and exhibited piloerection ability. Our findings indicate that the bioengineered hair follicles could restore physiological hair functions and could be applicable to surgical treatments for alopecia. PMID:22645640

Practical whole-tooth restoration utilizing autologous bioengineered tooth germ transplantation in a postnatal canine model

PubMed Central

Ono, Mitsuaki; Oshima, Masamitsu; Ogawa, Miho; Sonoyama, Wataru; Hara, Emilio Satoshi; Oida, Yasutaka; Shinkawa, Shigehiko; Nakajima, Ryu; Mine, Atsushi; Hayano, Satoru; Fukumoto, Satoshi; Kasugai, Shohei; Yamaguchi, Akira; Tsuji, Takashi; Kuboki, Takuo

2017-01-01

Whole-organ regeneration has great potential for the replacement of dysfunctional organs through the reconstruction of a fully functional bioengineered organ using three-dimensional cell manipulation in vitro. Recently, many basic studies of whole-tooth replacement using three-dimensional cell manipulation have been conducted in a mouse model. Further evidence of the practical application to human medicine is required to demonstrate tooth restoration by reconstructing bioengineered tooth germ using a postnatal large-animal model. Herein, we demonstrate functional tooth restoration through the autologous transplantation of bioengineered tooth germ in a postnatal canine model. The bioengineered tooth, which was reconstructed using permanent tooth germ cells, erupted into the jawbone after autologous transplantation and achieved physiological function equivalent to that of a natural tooth. This study represents a substantial advancement in whole-organ replacement therapy through the transplantation of bioengineered organ germ as a practical model for future clinical regenerative medicine. PMID:28300208

Project Alexander the Great: a study on the world proliferation of bioengineering/biomedical engineering education.

PubMed

Abu-Faraj, Ziad O

2008-01-01

Bioengineering/Biomedical Engineering is considered amongst the most reputable fields within the global arena, and will likely be the primer for any future breakthroughs in Medicine and Biology. Bioengineering/biomedical engineering education has evolved since late 1950s and is undergoing advancement in leading academic institutions worldwide. This paper delineates an original study on the world proliferation of bioengineering/biomedical engineering education and bears the name 'Project Alexander the Great'. The initial step of the project was to survey all 10448 universities, recognized by the International Association of Universities, spread among the 193 member states of the United Nations within the six continents. The project aims at identifying, disseminating, and networking, through the world-wide-web, those institutions of higher learning that provide bioengineering/biomedical engineering education. The significance of this project is multifold: i) the inception of a web-based 'world-map' in bioengineering/biomedical engineering education for the potential international student desiring to pursue a career in this field; ii) the global networking of bioengineering/biomedical engineering academic/research programs; iii) the promotion of first-class bioengineering/biomedical engineering education and the catalysis of global proliferation of this field; iv) the erection of bridges among educational institutions, industry, and professional societies or organizations involved in Bioengineering/Biomedical Engineering; and v) the catalysis in the establishment of framework agreements for cooperation among the identified institutions offering curricula in this field. This paper presents the results obtained from Africa and North America. The whole project is due to be completed by 2009.

Plant materials for riparian revegetation

Treesearch

J. Chris Hoag; Thomas D. Landis

2002-01-01

Increased public awareness and concern have prompted new efforts in riparian revegetation using streambank bioengineering techniques. Planting in a riparian zone is very different than planting on upland sites. Riparian planting zones should be used to ensure that the vegetation is planted in the appropriate location so that the planting does not create more problems...

Challenge-based instruction in biomedical engineering: a scalable method to increase the efficiency and effectiveness of teaching and learning in biomedical engineering.

PubMed

Harris, Thomas R; Brophy, Sean P

2005-09-01

Vanderbilt University, Northwestern University, the University of Texas and the Harvard/MIT Health Sciences Technology Program have collaborated since 1999 to develop means to improve bioengineering education. This effort, funded by the National Science Foundation as the VaNTH Engineering Research Center in Bioengineering Educational Technologies, has sought a synthesis of learning science, learning technology, assessment and the domains of bioengineering in order to improve learning by bioengineering students. Research has shown that bioengineering educational materials may be designed to emphasize challenges that engage the student and, when coupled with a learning cycle and appropriate technologies, can lead to improvements in instruction.

Linking soil permeability and soil aggregate stability with root development: a pots experiment (preliminary results)

NASA Astrophysics Data System (ADS)

Vergani, Chiara; Graf, Frank; Gerber, Werner

2015-04-01

Quantifying and monitoring the contribution of vegetation to the stability of the slopes is a key issue for implementing effective soil bioengineering measures. This topic is being widely investigated both from the hydrological and mechanical point of view. Nevertheless, due to the high variability of the biological components, we are still far from a comprehensive understanding of the role of plants in slope stabilization, especially if the different succession phases and the temporal development of vegetation is considered. Graf et al., 2014, found within the scope of aggregate stability investigations that the root length per soil volume of alder specimen grown for 20 weeks under laboratory conditions is comparable to the one of 20 years old vegetation in the field. This means that already relatively short time scales can provide meaningful information at least for the first stage of colonization of soil bioengineering measures, which is also the most critical. In the present study we analyzed the effect of root growth on two soil properties critical to evaluate the performance of vegetation in restoring and re-stabilizing slopes: permeability and soil aggregate stability. We set up a laboratory experiment in order to work under controlled conditions and limit as much as possible the natural variability. Alnus incana was selected as the study species as it is widely used in restoration projects in the Alps, also because of its capacity to fix nitrogen and its symbiosis with both ecto and arbuscular mycorrhizal fungi. After the first month of growth in germination pots, we planted one specimen each in big quasi cylindrical pots of 34 cm diameter and 35 cm height. The pots were filled with the soil fraction smaller than 10 mm coming from an oven dried moraine collected in a subalpine landslide area (Hexenrübi catchment, central Switzerland). The targeted dry unit weight was 16 kN/m3. The plants have been maintained at a daily temperature of 25°C and relative humidity of 75%, and at a night temperature of 17°C and relative humidity of 55% , with 15 hours of light per day. Four different growing periods have been distinguished (1, 2, 4 and 8 months). For each growing period 7 planted replicates have been set up, as well as 3 control pots with only bare soil treated the same way as the planted pots. After each growing period, the soil permeability was measured by means of a falling head procedure (Bagarello and Iovino, 2010) directly in the pots. Furthermore, soil aggregate stability was determined on soil samples applying a wet sieving method (Graf and Frei, 2013). Subsequently, root systems were collected and analyzed using different image software (Smartroot and Winrhizo). The permeability and soil aggregate stability values were finally linked with the root development stage and compared with field data coming from long-term stabilized slopes. Preliminary analysis reveals no significant influence of alder roots on both soil aggregate stability and hydraulic conductivity of soil after the one month growing period compared to the control. However, after two months we observed a decrease in the hydraulic conductivity values.

Engineering excellence in breakthrough biomedical technologies: bioengineering at the University of California, Riverside.

PubMed

Schultz, Jane S; Rodgers, V G J

2012-07-01

The Department of Bioengineering at the University of California, Riverside (UCR), was established in 2006 and is the youngest department in the Bourns College of Engineering. It is an interdisciplinary research engine that builds strength from highly recognized experts in biochemistry, biophysics, biology, and engineering, focusing on common critical themes. The range of faculty research interests is notable for its diversity, from the basic cell biology through cell function to the physiology of the whole organism, each directed at breakthroughs in biomedical devices for measurement and therapy. The department forges future leaders in bioengineering, mirroring the field in being energetic, interdisciplinary, and fast moving at the frontiers of biomedical discoveries. Our educational programs combine a solid foundation in bio logical sciences and engineering, diverse communication skills, and training in the most advanced quantitative bioengineering research. Bioengineering at UCR also includes the Bioengineering Interdepartmental Graduate (BIG) program. With its slogan Start-Grow-Be-BIG, it is already recognized for its many accomplishments, including being third in the nation in 2011 for bioengineering students receiving National Science Foundation graduate research fellowships as well as being one of the most ethnically inclusive programs in the nation.

Validity and reliability of an instrument for assessing case analyses in bioengineering ethics education.

PubMed

Goldin, Ilya M; Pinkus, Rosa Lynn; Ashley, Kevin

2015-06-01

Assessment in ethics education faces a challenge. From the perspectives of teachers, students, and third-party evaluators like the Accreditation Board for Engineering and Technology and the National Institutes of Health, assessment of student performance is essential. Because of the complexity of ethical case analysis, however, it is difficult to formulate assessment criteria, and to recognize when students fulfill them. Improvement in students' moral reasoning skills can serve as the focus of assessment. In previous work, Rosa Lynn Pinkus and Claire Gloeckner developed a novel instrument for assessing moral reasoning skills in bioengineering ethics. In this paper, we compare that approach to existing assessment techniques, and evaluate its validity and reliability. We find that it is sensitive to knowledge gain and that independent coders agree on how to apply it.

Bioengineering Kidneys for Transplantation

PubMed Central

Madariaga, Maria Lucia L.; Ott, Harald C.

2014-01-01

One in ten Americans suffer from chronic kidney disease, and close to 90,000 people die each year from causes related to kidney failure. Patients with end-stage renal disease are faced with two options: hemodialysis or transplantation. Unfortunately, the reach of transplantation is limited because of the shortage of donor organs and the need for immunosuppression. Bioengineered kidney grafts theoretically present a novel solution to both problems. Herein we discuss the history of bioengineering organs, the current status of bioengineered kidneys, considerations for the future of the field, and challenges to clinical translation. We hope that by integrating principles of tissue engineering, and stem cell and developmental biology, bioengineered kidney grafts will advance the field of regenerative medicine while meeting a critical clinical need. PMID:25217267

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Factors promoting increased rate of tissue regeneration: the zebrafish fin as a tool for examining tissue engineering design concepts.

PubMed

Boominathan, Vijay P; Ferreira, Tracie L

2012-12-01

Student interest in topics of tissue engineering is increasing exponentially as the number of universities offering programs in bioengineering are on the rise. Bioengineering encompasses all of the STEM categories: Science, Technology, Engineering, and Math. Inquiry-based learning is one of the most effective techniques for promoting student learning and has been demonstrated to have a high impact on learning outcomes. We have designed program outcomes for our bioengineering program that require tiered activities to develop problem solving skills, peer evaluation techniques, and promote team work. While it is ideal to allow students to ask unique questions and design their own experiments, this can be difficult for instructors to have reagents and supplies available for a variety of activities. Zebrafish can be easily housed, and multiple variables can be tested on a large enough group to provide statistical value, lending them well to inquiry-based learning modules. We have designed a laboratory activity that takes observation of fin regeneration to the next level: analyzing conditions that may impact regeneration. Tissue engineers seek to define the optimum conditions to grow tissue for replacement parts. The field of tissue engineering is likely to benefit from understanding natural mechanisms of regeneration and the factors that influence the rate of regeneration. We have outlined the results of varying temperature on fin regeneration and propose other inquiry modules such as the role of pH in fin regeneration. Furthermore, we have provided useful tools for developing critical thinking and peer review of research ideas, assessment guidelines, and grading rubrics for the activities associated with this exercise.

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Report of the Action Committee on Bioengineering.

ERIC Educational Resources Information Center

Schein, Martin W.

Bioengineering has been defined as "the application of knowledge gained by a cross fertilization of engineering and the biological sciences so that both will be more fully utilized for the benefit of mankind." Bioengineering has at least six areas of application: (1) medical engineering, (2) environmental health engineering, (3)…

Bioengineering and Cybernetics: A Modern Caduceus.

PubMed

Magin, Richard L

2017-01-01

Like the caduceus, a medical symbol of entwined serpents, bioengineering and cybernetics have interwoven together ideas and concepts for over 50 years. Half a century is a long time, and whether we are talking about an academic discipline, our lives, or an old car, achieving 50 is a number that brings pause to the conversation. In books, wine, or collectibles, 50 years is termed vintage, which carries the connotation of depth and maturity. Certainly, in the case of the discipline of bioengineering, 50 years is a milestone of growth and development. By all academic measures (number of departments, current enrollment and graduates, size of faculty, and impact factor for its publications), bioengineering is a mature discipline. Presently, there are almost 100 ABET-certified bioengineering degree programs in the United States alone.

Land degradation assessment by geo-spatially modeling different soil erodibility equations in a semi-arid catchment.

PubMed

Saygın, Selen Deviren; Basaran, Mustafa; Ozcan, Ali Ugur; Dolarslan, Melda; Timur, Ozgur Burhan; Yilman, F Ebru; Erpul, Gunay

2011-09-01

Land degradation by soil erosion is one of the most serious problems and environmental issues in many ecosystems of arid and semi-arid regions. Especially, the disturbed areas have greater soil detachability and transportability capacity. Evaluation of land degradation in terms of soil erodibility, by using geostatistical modeling, is vital to protect and reclaim susceptible areas. Soil erodibility, described as the ability of soils to resist erosion, can be measured either directly under natural or simulated rainfall conditions, or indirectly estimated by empirical regression models. This study compares three empirical equations used to determine the soil erodibility factor of revised universal soil loss equation prediction technology based on their geospatial performances in the semi-arid catchment of the Saraykoy II Irrigation Dam located in Cankiri, Turkey. A total of 311 geo-referenced soil samples were collected with irregular intervals from the top soil layer (0-10 cm). Geostatistical analysis was performed with the point values of each equation to determine its spatial pattern. Results showed that equations that used soil organic matter in combination with the soil particle size better agreed with the variations in land use and topography of the catchment than the one using only the particle size distribution. It is recommended that the equations which dynamically integrate soil intrinsic properties with land use, topography, and its influences on the local microclimates, could be successfully used to geospatially determine sites highly susceptible to water erosion, and therefore, to select the agricultural and bio-engineering control measures needed.

77 FR 54584 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

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2012-09-05

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77 FR 25488 - National Institute of Biomedical Imaging and Bioengineering; Amended Notice of Meeting

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2012-04-30

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Bioengineered humanized livers as better three-dimensional drug testing model system.

PubMed

Vishwakarma, Sandeep Kumar; Bardia, Avinash; Lakkireddy, Chandrakala; Nagarapu, Raju; Habeeb, Md Aejaz; Khan, Aleem Ahmed

2018-01-27

To develop appropriate humanized three-dimensional ex-vivo model system for drug testing. Bioengineered humanized livers were developed in this study using human hepatic stem cells repopulation within the acellularized liver scaffolds which mimics with the natural organ anatomy and physiology. Six cytochrome P-450 probes were used to enable efficient identification of drug metabolism in bioengineered humanized livers. The drug metabolism study in bioengineered livers was evaluated to identify the absorption, distribution, metabolism, excretion and toxicity responses. The bioengineered humanized livers showed cellular and molecular characteristics of human livers. The bioengineered liver showed three-dimensional natural architecture with intact vasculature and extra-cellular matrix. Human hepatic cells were engrafted similar to the human liver. Drug metabolism studies provided a suitable platform alternative to available ex-vivo and in vivo models for identifying cellular and molecular dynamics of pharmacological drugs. The present study paves a way towards the development of suitable humanized preclinical model systems for pharmacological testing. This approach may reduce the cost and time duration of preclinical drug testing and further overcomes on the anatomical and physiological variations in xenogeneic systems.

Functional Tooth Regeneration Using a Bioengineered Tooth Unit as a Mature Organ Replacement Regenerative Therapy

PubMed Central

Imamura, Aya; Ogawa, Miho; Yasukawa, Masato; Yamazaki, Hiromichi; Morita, Ritsuko; Ikeda, Etsuko; Nakao, Kazuhisa; Takano-Yamamoto, Teruko; Kasugai, Shohei; Saito, Masahiro; Tsuji, Takashi

2011-01-01

Donor organ transplantation is currently an essential therapeutic approach to the replacement of a dysfunctional organ as a result of disease, injury or aging in vivo. Recent progress in the area of regenerative therapy has the potential to lead to bioengineered mature organ replacement in the future. In this proof of concept study, we here report a further development in this regard in which a bioengineered tooth unit comprising mature tooth, periodontal ligament and alveolar bone, was successfully transplanted into a properly-sized bony hole in the alveolar bone through bone integration by recipient bone remodeling in a murine transplantation model system. The bioengineered tooth unit restored enough the alveolar bone in a vertical direction into an extensive bone defect of murine lower jaw. Engrafted bioengineered tooth displayed physiological tooth functions such as mastication, periodontal ligament function for bone remodeling and responsiveness to noxious stimulations. This study thus represents a substantial advance and demonstrates the real potential for bioengineered mature organ replacement as a next generation regenerative therapy. PMID:21765896

Synthetic biology: Emerging bioengineering in Indonesia

NASA Astrophysics Data System (ADS)

Suhandono, Sony

2017-05-01

The development of synthetic biology will shape the new era of science and technology. It is an emerging bioengineering technique involving genetic engineering which can alter the phenotype and behavior of the cell or the new product. Synthetic biology may produce biomaterials, drugs, vaccines, biosensors, and even a recombinant secondary metabolite used in herbal and complementary medicine, such as artemisinin, a malaria drug which is usually extracted from the plant Artemisia annua. The power of synthetic biology has encouraged scientists in Indonesia, and is still in early development. This paper also covers some research from an Indonesian research institute in synthetic biology such as observing the production of bio surfactants and the enhanced production of artemisinin using a transient expression system. Synthetic biology development in Indonesia may also be related to the iGEM competition, a large synthetic biology research competition which was attended by several universities in Indonesia. The application of synthetic biology for drug discovery will be discussed.

Bioengineered 3D Scaffolds in Cancer Research: Focus on Epithelial to Mesenchymal Transition and Drug Screening.

PubMed

Xu, Xiaoli; Tang, LiLing

2017-01-01

The living environment of cancer cells is complicated and information-rich. Thus, traditional 2D culture mold in vitro cannot mimic the microenvironment of cancer cells exactly. Currently, bioengineered 3D scaffolds have been developed which can better simulate the microenvironment of tumors and fill the gap between 2D culture and clinical application. In this review, we discuss the scaffold materials used for fabrication techniques, biological behaviors of cancer cells in 3D scaffolds and the scaffold-based drug screening. A major emphasis is placed on the description of scaffold-based epithelial to mesenchymal transition and drug screening in 3D culture. By overcoming the defects of traditional 2D culture, 3D scaffolds culture can provide a simpler, safer and more reliable approach for cancer research. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Improving Bioengineering Student Leadership Identity Via Training and Practice within the Core-Course.

PubMed

Rosch, David M; Imoukhuede, P I

2016-12-01

The development of a leadership identity has become significant in bioengineering education as a result of an increasing emphasis on teamwork within the profession and corresponding shifts in accreditation criteria. Unsurprisingly, placing bioengineering students in teams to complete classroom-based projects has become a dominant pedagogical tool. However, recent research indicates that engineering students may not develop a leadership identity, much less increased leadership capacity, as a result of such efforts. Within this study, we assessed two similar sections of an introductory course in bioengineering; each placed students in teams, while one also included leadership training and leadership practice. Results suggest that students in the leadership intervention section developed a strong self-image of themselves as leaders compared to students in the control section. These data suggest that creating mechanisms for bioengineering students to be trained in leadership and to practice leadership behaviors within a classroom team may be keys for unlocking leadership development.

Experimental design methods for bioengineering applications.

PubMed

Keskin Gündoğdu, Tuğba; Deniz, İrem; Çalışkan, Gülizar; Şahin, Erdem Sefa; Azbar, Nuri

2016-01-01

Experimental design is a form of process analysis in which certain factors are selected to obtain the desired responses of interest. It may also be used for the determination of the effects of various independent factors on a dependent factor. The bioengineering discipline includes many different areas of scientific interest, and each study area is affected and governed by many different factors. Briefly analyzing the important factors and selecting an experimental design for optimization are very effective tools for the design of any bioprocess under question. This review summarizes experimental design methods that can be used to investigate various factors relating to bioengineering processes. The experimental methods generally used in bioengineering are as follows: full factorial design, fractional factorial design, Plackett-Burman design, Taguchi design, Box-Behnken design and central composite design. These design methods are briefly introduced, and then the application of these design methods to study different bioengineering processes is analyzed.

Formative Assessment and Professional Training: Reflections from a Mathematics course in Bioengineering

NASA Astrophysics Data System (ADS)

Carrere, C.; Milesi, S.; Lapyckyj, I.; Ravera, E.; Escher, L.; Miyara, A.; Pita, G.; Añino, M.

2016-04-01

Bioengineering is currently considered an interdisciplinary professional field which provides solutions to different problems arising in the area of health care. Its strategic importance is widely acknowledged since its developments and proposals could help diminish the level of technological dependence in the sector. The fast pace of innovation in the area of biomedical technology gives rise to permanent reflection on the learning goals and teaching strategies proposed by educators in the different training stages of a bioengineer. In this context, learning assessment appears as a controversial issue which needs to be debated and rethought. This paper describes the reflections of teachers of a Mathematics course within a Bioengineering program around the question, What approach to assessment favors the student’s participation, autonomy and training as a future bioengineer? The investigation was carried out in the framework of a Participatory Research Action project and helped us to redesign assessment activities from a different perspective.

Bioengineering a Human Plasma-Based Epidermal Substitute With Efficient Grafting Capacity and High Content in Clonogenic Cells

PubMed Central

Alexaline, Maia M.; Trouillas, Marina; Nivet, Muriel; Bourreau, Emilie; Leclerc, Thomas; Duhamel, Patrick; Martin, Michele T.; Doucet, Christelle; Fortunel, Nicolas O.

2015-01-01

Cultured epithelial autografts (CEAs) produced from a small, healthy skin biopsy represent a lifesaving surgical technique in cases of full-thickness skin burn covering >50% of total body surface area. CEAs also present numerous drawbacks, among them the use of animal proteins and cells, the high fragility of keratinocyte sheets, and the immaturity of the dermal-epidermal junction, leading to heavy cosmetic and functional sequelae. To overcome these weaknesses, we developed a human plasma-based epidermal substitute (hPBES) for epidermal coverage in cases of massive burn, as an alternative to traditional CEA, and set up critical quality controls for preclinical and clinical studies. In this study, phenotypical analyses in conjunction with functional assays (clonal analysis, long-term culture, or in vivo graft) showed that our new substitute fulfills the biological requirements for epidermal regeneration. hPBES keratinocytes showed high potential for cell proliferation and subsequent differentiation similar to healthy skin compared with a well-known reference material, as ascertained by a combination of quality controls. This work highlights the importance of integrating relevant multiparameter quality controls into the bioengineering of new skin substitutes before they reach clinical development. Significance This work involves the development of a new bioengineered epidermal substitute with pertinent functional quality controls. The novelty of this work is based on this quality approach. PMID:25848122

Bioengineering a human plasma-based epidermal substitute with efficient grafting capacity and high content in clonogenic cells.

PubMed

Alexaline, Maia M; Trouillas, Marina; Nivet, Muriel; Bourreau, Emilie; Leclerc, Thomas; Duhamel, Patrick; Martin, Michele T; Doucet, Christelle; Fortunel, Nicolas O; Lataillade, Jean-Jacques

2015-06-01

Cultured epithelial autografts (CEAs) produced from a small, healthy skin biopsy represent a lifesaving surgical technique in cases of full-thickness skin burn covering >50% of total body surface area. CEAs also present numerous drawbacks, among them the use of animal proteins and cells, the high fragility of keratinocyte sheets, and the immaturity of the dermal-epidermal junction, leading to heavy cosmetic and functional sequelae. To overcome these weaknesses, we developed a human plasma-based epidermal substitute (hPBES) for epidermal coverage in cases of massive burn, as an alternative to traditional CEA, and set up critical quality controls for preclinical and clinical studies. In this study, phenotypical analyses in conjunction with functional assays (clonal analysis, long-term culture, or in vivo graft) showed that our new substitute fulfills the biological requirements for epidermal regeneration. hPBES keratinocytes showed high potential for cell proliferation and subsequent differentiation similar to healthy skin compared with a well-known reference material, as ascertained by a combination of quality controls. This work highlights the importance of integrating relevant multiparameter quality controls into the bioengineering of new skin substitutes before they reach clinical development. This work involves the development of a new bioengineered epidermal substitute with pertinent functional quality controls. The novelty of this work is based on this quality approach. ©AlphaMed Press.

Bioengineering Hematopoietic Stem Cell Niche toward Regenerative Medicine.

PubMed

Sugimura, Ryohichi

2016-04-01

The scope of this chapter is to introduce the current consensus of hematopoietic stem cell (HSC) niche biology to bioengineering field so that can apply to regenerative medicine. A decade of research has been addressing "what is HSC niche", then next step is "how it advances medicine". The demand to improve HSC transplantation has advanced the methodology to expand HSC in vitro. Still precise modeling of bone marrow (BM) is demanded by bioengineering HSC niche in vitro. Better understanding of HSC niche is essential toward this progress. Now it would be the time to apply the knowledge of HSC niche field to the venue of bioengineering, so that a promising new approach to regenerative medicine might appear. This chapter describes the current consensus of niche that endothelial cell and perivascular mesenchymal stromal cell maintain HSC, expansion of cord blood HSC by small molecules, bioengineering efforts to model HSC niche by microfluidics chip, organoids, and breakthroughs to induce HSC from heterologous types of cells. Copyright © 2015 Elsevier B.V. All rights reserved.

Functional salivary gland regeneration by transplantation of a bioengineered organ germ

PubMed Central

Ogawa, Miho; Oshima, Masamitsu; Imamura, Aya; Sekine, Yurie; Ishida, Kentaro; Yamashita, Kentaro; Nakajima, Kei; Hirayama, Masatoshi; Tachikawa, Tetsuhiko; Tsuji, Takashi

2013-01-01

Salivary gland hypofunction, also known as xerostomia, occurs as a result of radiation therapy for head cancer, Sjögren’s syndrome or aging, and can cause a variety of critical oral health issues, including dental decay, bacterial infection, mastication dysfunction, swallowing dysfunction and reduced quality of life. Here we demonstrate the full functional regeneration of a salivary gland that reproduces the morphogenesis induced by reciprocal epithelial and mesenchymal interactions through the orthotopic transplantation of a bioengineered salivary gland germ as a regenerative organ replacement therapy. The bioengineered germ develops into a mature gland through acinar formations with a myoepithelium and innervation. The bioengineered submandibular gland produces saliva in response to the administration of pilocarpine and gustatory stimulation by citrate, protects against oral bacterial infection and restores normal swallowing in a salivary gland-defective mouse model. This study thus provides a proof-of-concept for bioengineered salivary gland regeneration as a potential treatment of xerostomia. PMID:24084982

Bioengineered Tooth Buds Exhibit Features of Natural Tooth Buds.

PubMed

Smith, E E; Angstadt, S; Monteiro, N; Zhang, W; Khademhosseini, A; Yelick, P C

2018-06-01

Tooth loss is a significant health issue currently affecting millions of people worldwide. Artificial dental implants, the current gold standard tooth replacement therapy, do not exhibit many properties of natural teeth and can be associated with complications leading to implant failure. Here we propose bioengineered tooth buds as a superior alternative tooth replacement therapy. We describe improved methods to create highly cellularized bioengineered tooth bud constructs that formed hallmark features that resemble natural tooth buds such as the dental epithelial stem cell niche, enamel knot signaling centers, transient amplifying cells, and mineralized dental tissue formation. These constructs were composed of postnatal dental cells encapsulated within a hydrogel material that were implanted subcutaneously into immunocompromised rats. To our knowledge, this is the first report describing the use of postnatal dental cells to create bioengineered tooth buds that exhibit evidence of these features of natural tooth development. We propose future bioengineered tooth buds as a promising, clinically relevant tooth replacement therapy.

Feasibility of biochar application on a landfill final cover-a review on balancing ecology and shallow slope stability.

PubMed

Chen, Xun-Wen; Wong, James Tsz-Fung; Ng, Charles Wang-Wai; Wong, Ming-Hung

2016-04-01

Due to the increasing concerns on global warming, scarce land for agriculture, and contamination impacts on human health, biochar application is being considered as one of the possible measures for carbon sequestration, promoting higher crop yield and contamination remediation. Significant amount of researches focusing on these three aspects have been conducted during recent years. Biochar as a soil amendment is effective in promoting plant performance and sustainability, by enhancing nutrient bioavailability, contaminants immobilization, and microbial activities. The features of biochar in changing soil physical and biochemical properties are essential in affecting the sustainability of an ecosystem. Most studies showed positive results and considered biochar application as an effective and promising measure for above-mentioned interests. Bio-engineered man-made filled slope and landfill slope increasingly draw the attention of geologists and geotechnical engineers. With increasing number of filled slopes, sustainability, low maintenance, and stability are the major concerns. Biochar as a soil amendment changes the key factors and parameters in ecology (plant development, soil microbial community, nutrient/contaminant cycling, etc.) and slope engineering (soil weight, internal friction angle and cohesion, etc.). This paper reviews the studies on the production, physical and biochemical properties of biochar and suggests the potential areas requiring study in balancing ecology and man-made filled slope and landfill cover engineering. Biochar-amended soil should be considered as a new type of soil in terms of soil mechanics. Biochar performance depends on soil and biochar type which imposes challenges to generalize the research outcomes. Aging process and ecotoxicity studies of biochar are strongly required.

Bio-engineering traits of Pinus radiata D.Don

NASA Astrophysics Data System (ADS)

Giadrossich, Filippo; Marden, Michael; Marrosu, Roberto; Schwarz, Massimiliano; Phillips, Chris John; Cohen, Denis; Niedda, Marcello

2017-04-01

Pinus radiata is widely cultivated in New Zealand. Due to steep slopes and intense rainfall, the silviculture of Pinus radiata forests is important to control erosion and slope stability. Bio-engineering traits such as root distribution and root tensile strength are fundamental to understand the effectiveness of Pinus radiata. This information is needed to use the state of the art root reinforcement model (the Root Bundle Model) and the physically-based slope stability model SOSlope. Yet, little is known about root distribution and tensile strength for this specie. We measured soil moisture and carried out 30 field tensile tests on roots of Pinus radiata. We also measured root distribution data from 5 plants, digging arc of circles 0.6 radian around the trees in four opposite directions. We fully excavated the root system of two trees. Using the Root Bundle Model, results of our measurements allow estimation of root reinforcement. With the slope stability model SOSlope, information on the intensity and frequency of harvesting and on the development of weak zones that can be supported by a stand of Pinus radiata in relation to slope stability can be calculated. An added value is that the collected data allow us to make inferences between number and sizes of roots, and growth direction.

Bioengineered Hydrogel to Inhibit Post-Traumatic Central Nervous System Scarring

DTIC Science & Technology

2016-10-01

AWARD NUMBER: W81XWH-14-1-0586 TITLE: Bioengineered Hydrogel to Inhibit Post-Traumatic Central Nervous System Scarring PRINCIPAL INVESTIGATOR...Bioengineered Hydrogel to Inhibit Post-Traumatic Central Nervous System Scarring 5a. CONTRACT NUMBER 5b. GRANT NUMBER W81XWH- 14-1-0586 5c. PROGRAM ELEMENT...cavitations that are not spontaneously repaired. Early after injury, blood enters the central nervous system (CNS) and directly kills brain cells but also

Bioengineered Skin From Stem Cells for Treatment of Cutaneous Vesicant Injury

DTIC Science & Technology

2006-11-01

sterile gauze; the gauze was dipped into the decontamination solution using forceps and gently applied to the injury site using circular motions...weight ratio of the skin biopsy of the animals exposed to CEES and treated with either bioengineered skin or saline. Briefly, at different time...The CEES + saline or CEES + bioengineered skin treated areas were excised using a sterile blade, scissors, and forceps . Half of the skin sample

Career development in Bioengineering/Biomedical Engineering: a student's roadmap.

PubMed

Abu-Faraj, Ziad O

2008-01-01

Bioengineering/biomedical engineering education has progressed since the late 1950s and is still evolving in leading academic institutions worldwide. Today, Bioengineering/Biomedical Engineering is acclaimed as one of the most reputable fields within the global arena, and will likely be the catalyst for any future breakthroughs in Medicine and Biology. This paper provides a set of strategies and recommendations to be pursued by individuals aiming at planning and developing careers in this field. The paper targets the international student contemplating bioengineering/biomedical engineering as a career, with an underlying emphasis on the student within developing and transitional countries where career guidance is found deficient. The paper also provides a comprehensive definition of the field and an enumeration of its subdivisions.

Perianal implantation of bioengineered human internal anal sphincter constructs intrinsically innervated with human neural progenitor cells.

PubMed

Raghavan, Shreya; Miyasaka, Eiichi A; Gilmont, Robert R; Somara, Sita; Teitelbaum, Daniel H; Bitar, Khalil N

2014-04-01

The internal anal sphincter (IAS) is a major contributing factor to pressure within the anal canal and is required for maintenance of rectoanal continence. IAS damage or weakening results in fecal incontinence. We have demonstrated that bioengineered, intrinsically innervated, human IAS tissue replacements possess key aspects of IAS physiology, such as the generation of spontaneous basal tone and contraction/relaxation in response to neurotransmitters. The objective of this study is to demonstrate the feasibility of implantation of bioengineered IAS constructs in the perianal region of athymic rats. Human IAS tissue constructs were bioengineered from isolated human IAS circular smooth muscle cells and human enteric neuronal progenitor cells. After maturation of the bioengineered constructs in culture, they were implanted operatively into the perianal region of athymic rats. Platelet-derived growth factor was delivered to the implanted constructs through a microosmotic pump. Implanted constructs were retrieved from the animals 4 weeks postimplantation. Animals tolerated the implantation well, and there were no early postoperative complications. Normal stooling was observed during the implantation period. At harvest, implanted constructs were adherent to the perirectal rat tissue and appeared healthy and pink. Immunohistochemical analysis revealed neovascularization. Implanted smooth muscle cells maintained contractile phenotype. Bioengineered constructs responded in vitro in a tissue chamber to neuronally evoked relaxation in response to electrical field stimulation and vasoactive intestinal peptide, indicating the preservation of neuronal networks. Our results indicate that bioengineered innervated IAS constructs can be used to augment IAS function in an animal model. This is a regenerative medicine based therapy for fecal incontinence that would directly address the dysfunction of the IAS muscle. Copyright © 2014 Mosby, Inc. All rights reserved.

A brief history of the Bioengineering Institute of California and the UC System-wide Symposia.

PubMed

Chien, Shu

2011-04-01

The plan to establish a Multicampus Research Unit (MRU) on Bioengineering in the University of California (UC) System started in August 1999. The cooperative efforts of the UC campuses led to the formal establishment of the Bioengineering Institute of California (BIC) in October 2003. Three years prior to the BIC establishment, the System-wide Annual Bioengineering Symposium was started at UC Davis. The Symposia were then hosted sequentially by UC Santa Barbara, UC Berkeley, UCSD, UC Santa Cruz, UC Irvine, UCSF, UCLA, and UC Riverside, with the completion of the first cycle of a decade in the newest campus of UC Merced in 2009. The second cycle began in 2010 with the Symposium returning again to UC Davis. Each campus hosted a wonderful Symposium, with the active participation of students and faculty from all campuses, with the motto of "Ten campuses united as one, learning and growing together." These Symposia have contributed significantly to the collaborative research and training of students and young scientists in bioengineering, as well as fruitful interactions with industry and government agencies, which have provided strong support for these valuable meetings. The BIC will endeavor to further enhance these efforts by fostering research collaborations and joint education and training activities, with the ultimate goal of advancing bioengineering for the improvement of human health and wellbeing.

Electro-optical system for the nondestructive evaluation of bioengineering materials

NASA Astrophysics Data System (ADS)

Sciammarella, Cesar A.; Bhat, Gopalakrishna K.; Albertazzi, Armando, Jr.

1991-08-01

The paper presents a system that may be used in a wide range of biomedical fields. The system can be applied in conjunction with different optical techniques: (a) holography, (b) moire method, (c) speckle techniques, (d) photoelasticity. The system has been built in such a way that an operator with average skills will be able to use it; data acquisition and processing are fast and almost automatic. A brief description of the system, its main components and the basic theory behind it, are given. The use of the system is illustrated with examples in orthopedics and in the cardio-vascular area.

Bioengineering and Rehabilitation: Windows of Opportunity Past, Present and Future

NASA Technical Reports Server (NTRS)

1985-01-01

The applications of NASA research in the areas of bioengineering and rehabilitation are discussed. Wheelchairs, gait analysis, blood analyzers, programmable pacemakers and cardiology mannequins are among the topics covered.

Bio-engineering for land stabilization : final report.

DOT National Transportation Integrated Search

2010-06-01

As part of the Ohio Department of Transportations (ODOTs) ongoing effort to solve engineering problems for the Ohio : transportation system through research, The Ohio State University has undertaken a study entitled Bioengineering for : Land...

Functional lacrimal gland regeneration by transplantation of a bioengineered organ germ

PubMed Central

Hirayama, Masatoshi; Ogawa, Miho; Oshima, Masamitsu; Sekine, Yurie; Ishida, Kentaro; Yamashita, Kentaro; Ikeda, Kazutaka; Shimmura, Shigeto; Kawakita, Tetsuya; Tsubota, Kazuo; Tsuji, Takashi

2013-01-01

The lacrimal gland has a multifaceted role in maintaining a homeostatic microenvironment for a healthy ocular surface via tear secretion. Dry-eye disease, which is caused by lacrimal gland dysfunction, is one of the most prevalent eye diseases that cause corneal epithelial damage and results in significant loss of vision and a reduction in the quality of life. Here we demonstrate orthotopic transplantation of bioengineered lacrimal gland germs into adult mice with an extra-orbital lacrimal gland defect, a mouse model that mimics the corneal epithelial damage caused by lacrimal gland dysfunction. The bioengineered lacrimal gland germs and harderian gland germs both develop in vivo and achieve sufficient physiological functionality, including tear production in response to nervous stimulation and ocular surface protection. This study demonstrates the potential for bioengineered organ replacement to functionally restore the lacrimal gland. PMID:24084941

Fully functional hair follicle regeneration through the rearrangement of stem cells and their niches

PubMed Central

Toyoshima, Koh-ei; Asakawa, Kyosuke; Ishibashi, Naoko; Toki, Hiroshi; Ogawa, Miho; Hasegawa, Tomoko; Irié, Tarou; Tachikawa, Tetsuhiko; Sato, Akio; Takeda, Akira; Tsuji, Takashi

2012-01-01

Organ replacement regenerative therapy is purported to enable the replacement of organs damaged by disease, injury or aging in the foreseeable future. Here we demonstrate fully functional hair organ regeneration via the intracutaneous transplantation of a bioengineered pelage and vibrissa follicle germ. The pelage and vibrissae are reconstituted with embryonic skin-derived cells and adult vibrissa stem cell region-derived cells, respectively. The bioengineered hair follicle develops the correct structures and forms proper connections with surrounding host tissues such as the epidermis, arrector pili muscle and nerve fibres. The bioengineered follicles also show restored hair cycles and piloerection through the rearrangement of follicular stem cells and their niches. This study thus reveals the potential applications of adult tissue-derived follicular stem cells as a bioengineered organ replacement therapy. PMID:22510689

Development of a tissue engineered heart valve for pediatrics: a case study in bioengineering ethics.

PubMed

Merryman, W David

2008-03-01

The following hypothetical case study was developed for bioengineering students and is concerned with choosing between two devices used for development of a pediatric tissue engineered heart valve (TEHV). This case is intended to elicit assessment of the devices, possible future outcomes, and ramifications of the decision making. It is framed in light of two predominant ethical theories: utilitarianism and rights of persons. After the case was presented to bioengineering graduate students, they voted on which device should be released. The results revealed that these bioengineering students preferred the more reliable (and substantially more expensive) design, though this choice precludes the majority of the world from having access to this technology. This case is intended to examine and explore where the balance lies between design, cost, and adequate distribution of biomedical devices.

Effect of water table fluctuations on phreatophytic root distribution.

PubMed

Tron, Stefania; Laio, Francesco; Ridolfi, Luca

2014-11-07

The vertical root distribution of riparian vegetation plays a relevant role in soil water balance, in the partition of water fluxes into evaporation and transpiration, in the biogeochemistry of hyporheic corridors, in river morphodynamics evolution, and in bioengineering applications. The aim of this work is to assess the effect of the stochastic variability of the river level on the root distribution of phreatophytic plants. A function describing the vertical root profile has been analytically obtained by coupling a white shot noise representation of the river level variability to a description of the dynamics of root growth and decay. The root profile depends on easily determined parameters, linked to stream dynamics, vegetation and soil characteristics. The riparian vegetation of a river characterized by a high variability turns out to have a rooting system spread over larger depths, but with shallower mean root depths. In contrast, a lower river variability determines root profiles with higher mean root depths. Copyright © 2014 Elsevier Ltd. All rights reserved.

Engineering stromal-epithelial interactions in vitro for ...

EPA Pesticide Factsheets

Background: Crosstalk between epithelial and stromal cells drives the morphogenesis of ectodermal organs during development and promotes normal mature adult epithelial tissue function. Epithelial-mesenchymal interactions (EMIs) have been examined using mammalian models, ex vivo tissue recombination, and in vitro co-cultures. Although these approaches have elucidated signaling mechanisms underlying morphogenetic processes and adult mammalian epithelial tissue function, they are limited by the availability of human tissue, low throughput, and human developmental or physiological relevance. Objectives: Bioengineering strategies to promote EMIs using human epithelial and mesenchymal cells have enabled the development of human in vitro models of adult epidermal and glandular tissues. In this review, we describe recent bioengineered models of human epithelial tissue and organs that can instruct the design of organotypic models of human developmental processes.Methods: We reviewed current bioengineering literature and here describe how bioengineered EMIs have enabled the development of human in vitro epithelial tissue models.Discussion: Engineered models to promote EMIs have recapitulated the architecture, phenotype, and function of adult human epithelial tissue, and similar engineering principles could be used to develop models of developmental morphogenesis. We describe how bioengineering strategies including bioprinting and spheroid culture could be implemented to

77 FR 37684 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2012-06-22

... Imaging and Bioengineering Special Emphasis Panel; Center for Multiscale Simulations in the Human....D., Scientific Review Officer, 6707 Democracy Boulevard, Room 959, Bethesda, MD 20892, 301-451- 3398...

"Hands on" in bioengineering.

PubMed

Bastos, Teodiano F; Muller, Sandra M T

2010-01-01

Several students of Bioengineering complain about the excess of theoretical classes and the difficulty to assimilate the subject taught. This article presents a strategy to mix theory and practice when teaching, thus motivating students to engage in their studies.

Successful implantation of physiologically functional bioengineered mouse internal anal sphincter.

PubMed

Raghavan, Shreya; Miyasaka, Eiichi A; Hashish, Mohamed; Somara, Sita; Gilmont, Robert R; Teitelbaum, Daniel H; Bitar, Khalil N

2010-08-01

We have previously developed bioengineered three-dimensional internal anal sphincter (IAS) rings from circular smooth muscle cells isolated from rabbit and human IAS. We provide proof of concept that bioengineered mouse IAS rings are neovascularized upon implantation into mice of the same strain and maintain concentric smooth muscle alignment, phenotype, and IAS functionality. Rings were bioengineered by using smooth muscle cells from the IAS of C57BL/6J mice. Bioengineered mouse IAS rings were implanted subcutaneously on the dorsum of C57BL/6J mice along with a microosmotic pump delivering fibroblast growth factor-2. The mice remained healthy during the period of implantation, showing no external signs of rejection. Mice were killed 28 days postsurgery and implanted IAS rings were harvested. IAS rings showed muscle attachment, neovascularization, healthy color, and no external signs of infection or inflammation. Assessment of force generation on harvested IAS rings showed the following: 1) spontaneous basal tone was generated in the absence of external stimulation; 2) basal tone was relaxed by vasoactive intestinal peptide, nitric oxide donor, and nifedipine; 3) acetylcholine and phorbol dibutyrate elicited rapid-rising, dose-dependent, sustained contractions repeatedly over 30 min without signs of muscle fatigue; and 4) magnitudes of potassium chloride-induced contractions were 100% of peak maximal agonist-induced contractions. Our preliminary results confirm the proof of concept that bioengineered rings are neovascularized upon implantation. Harvested rings maintain smooth muscle alignment and phenotype. Our physiological studies confirm that implanted rings maintain 1) overall IAS physiology and develop basal tone, 2) integrity of membrane ionic characteristics, and 3) integrity of membrane associated intracellular signaling transduction pathways for contraction and relaxation by responding to cholinergic, nitrergic, and VIP-ergic stimulation. IAS smooth muscle tissue could thus be bioengineered for the purpose of implantation to serve as a potential graft therapy for dysfunctional internal anal sphincter in fecal incontinence.

New approaches to increase intestinal length: Methods used for intestinal regeneration and bioengineering

PubMed Central

Shirafkan, Ali; Montalbano, Mauro; McGuire, Joshua; Rastellini, Cristiana; Cicalese, Luca

2016-01-01

Inadequate absorptive surface area poses a great challenge to the patients suffering a variety of intestinal diseases causing short bowel syndrome. To date, these patients are managed with total parenteral nutrition or intestinal transplantation. However, these carry significant morbidity and mortality. Currently, by emergence of tissue engineering, anticipations to utilize an alternative method to increase the intestinal absorptive surface area are increasing. In this paper, we will review the improvements made over time in attempting elongating the intestine with surgical techniques as well as using intestinal bioengineering. Performing sequential intestinal lengthening was the preliminary method applied in humans. However, these methods did not reach widespread use and has limited outcome. Subsequent experimental methods were developed utilizing scaffolds to regenerate intestinal tissue and organoids unit from the intestinal epithelium. Stem cells also have been studied and applied in all types of tissue engineering. Biomaterials were utilized as a structural support for naive cells to produce bio-engineered tissue that can achieve a near-normal anatomical structure. A promising novel approach is the elongation of the intestine with an acellular biologic scaffold to generate a neo-formed intestinal tissue that showed, for the first time, evidence of absorption in vivo. In the large intestine, studies are more focused on regeneration and engineering of sphincters and will be briefly reviewed. From the review of the existing literature, it can be concluded that significant progress has been achieved in these experimental methods but that these now need to be fully translated into a pre-clinical and clinical experimentation to become a future viable therapeutic option. PMID:27011901

Monitoring of bioengineering stabilization projects : final report.

DOT National Transportation Integrated Search

2009-08-01

Four sites with bioengineered stream banks were monitored for four years. Observations included quantitative : measurements of stream discharge, stage and velocity. No bank erosion was observed to have affected the stream : banks at any of the monito...

Immunosuppression-free transplantation reconsidered from a regenerative medicine perspective.

PubMed

Orlando, Giuseppe

2012-02-01

Recent groundbreaking progress in regenerative medicine has shown its potential to meet the two major needs of solid organ transplantation, namely the achievement of an immunosuppression-free state (IFS) and the identification of a new, potentially inexhaustible source of organs. This review illustrates how regenerative medicine technology may contribute to the achievement of IFS. There are three possible strategies: organ bioengineering, immuno-isolation and thymus bioengineering. The goal of organ bioengineering is to manufacture organs ex vivo from autologous cells. Immuno-isolation technology implements strategies aiming to prevent recognition of nonself antigens by the host immune system. Thymus organoids have been bioengineered with scaffold-seeding methods to allow deletion of T-cell clones responsible for allograft rejection. Despite the several hurdles that must be overcome, regenerative medicine technologies offer alternative strategies aimed at establishing immediate, stable and durable IFS in solid organ graft recipients.

Bioengineering of the Enterobacter aerogenes strain for biohydrogen production.

PubMed

Zhang, Chong; Lv, Feng-Xiang; Xing, Xin-Hui

2011-09-01

Enterobacter aerogenes is one of the most widely-studied model strains for fermentative hydrogen production. To improve the hydrogen yield of E. aerogenes, the bioengineering on a biomolecular level and metabolic network level is of importance. In this review, the fermentative technology of E. aerogenes for hydrogen production will be first briefly summarized. And then the bioengineering of E. aerogenes for the improvement of hydrogen yield will be thoroughly reviewed, including the anaerobic metabolic networks for hydrogen evolution in E. aerogenes, metabolic engineering for improving hydrogen production in E. aerogenes and mixed culture of E. aerogenes with other hydrogen-producing bacteria to enhance the overall yield in anaerobic cultivation. Finally, a perspective on E. aerogenes as a hydrogen producer including systems bioengineering approach for improving the hydrogen yield and application of the engineered E. aerogenes in mixed culture will be presented. Copyright © 2011 Elsevier Ltd. All rights reserved.

Bioengineered probiotics, a strategic approach to control enteric infections

PubMed Central

Amalaradjou, Mary Anne Roshni; Bhunia, Arun K

2013-01-01

Enteric infections account for high morbidity and mortality and are considered to be the fifth leading cause of death at all ages worldwide. Seventy percent of all enteric infections are foodborne. Thus significant efforts have been directed toward the detection, control and prevention of foodborne diseases. Many antimicrobials including antibiotics have been used for their control and prevention. However, probiotics offer a potential alternative intervention strategy owing to their general health beneficial properties and inhibitory effects against foodborne pathogens. Often, antimicrobial probiotic action is non-specific and non-discriminatory or may be ineffective. In such cases, bioengineered probiotics expressing foreign gene products to achieve specific function is highly desirable. In this review we summarize the strategic development of recombinant bioengineered probiotics to control enteric infections, and to examine how scientific advancements in the human microbiome and their immunomodulatory effects help develop such novel and safe bioengineered probiotics. PMID:23327986

Bioengineering approaches to controlled protein delivery.

PubMed

Kobsa, Serge; Saltzman, W Mark

2008-05-01

Proteins are of crucial importance in all biologic organisms, in terms of both structure and function. Their deficits play central roles in many pathologic states, and their potential as powerful therapeutic agents has been widely recognized. Many issues, however, exist in delivery of biologically active proteins to target tissues and organs. Recent advances in biomedical engineering have lead to development of advanced techniques for controlled delivery of peptides and proteins, paving the way for their efficient use in treating human injury and disease. With a particular emphasis on most recent advances, this review discusses currently available techniques for controlled delivery of proteins and considers future research directions.

Special Delivery | The UCSB Current

Science.gov Websites

Mitragotri inflammation bioengineering Center for BioEngineering engineering Categories Alumni Business Sciences Staff International Affairs Medicine + Health Students Theater + Dance Environment Archives Topics Arts + Culture Science + Technology Alumni Campus About News@UCSB Public Affairs &

Nanoscale porosity in polymer films: fabrication and therapeutic applications

PubMed Central

Bernards, Daniel A.; Desai, Tejal A.

2011-01-01

This review focuses on current developments in the field of nanostructured bulk polymers and their application in bioengineering and therapeutic sciences. In contrast to well-established nanoscale materials, such as nanoparticles and nanofibers, bulk nanostructured polymers combine nanoscale structure in a macroscopic construct, which enables unique application of these materials. Contemporary fabrication and processing techniques capable of producing nanoporous polymer films are reviewed. Focus is placed on techniques capable of sub-100 nm features since this range approaches the size scale of biological components, such as proteins and viruses. The attributes of these techniques are compared, with an emphasis on the characteristic advantages and limitations of each method. Finally, application of these materials to biofiltration, immunoisolation, and drug delivery are reviewed. PMID:22140398

Microalgal bioengineering for sustainable energy development: Recent transgenesis and metabolic engineering strategies.

PubMed

Banerjee, Chiranjib; Singh, Puneet Kumar; Shukla, Pratyoosh

2016-03-01

Exploring the efficiency of algae to produce remarkable products can be directly benefitted by studying its mechanism at systems level. Recent advents in biotechnology like flux balance analysis (FBA), genomics and in silico proteomics minimize the wet lab exertion. It is understood that FBA predicts the metabolic products, metabolic pathways and alternative pathway to maximize the desired product, and these are key components for microalgae bio-engineering. This review encompasses recent transgenesis techniques and metabolic engineering strategies applied to different microalgae for improving different traits. Further it also throws light on RNAi and riboswitch engineering based methods which may be advantageous for high throughput microalgal research. A valid and optimally designed microalga can be developed where every engineering strategies meet each other successfully and will definitely fulfill the market needs. It is also to be noted that Omics (viz. genetic and metabolic manipulation with bioinformatics) should be integrated to develop a strain which could prove to be a futuristic solution for sustainable development for energy. Copyright © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Addressing endotoxin issues in bioengineered heparin.

PubMed

Suwan, Jiraporn; Torelli, Amanda; Onishi, Akihiro; Dordick, Jonathan S; Linhardt, Robert J

2012-01-01

Heparin is a widely used clinical anticoagulant that is prepared from pig intestine. A contamination of heparin in 2008 has led to a reexamination of animal-derived pharmaceuticals. A bioengineered heparin prepared by bacterial fermentation and chemical and enzymatic processing is currently under development. This study examines the challenges of reducing or removing endotoxins associated with this process that are necessary to proceed with preclinical in vivo evaluation of bioengineered heparin. The current process is assessed for endotoxin levels, and strategies are examined for endotoxin removal from polysaccharides and enzymes involved in this process. © 2012 International Union of Biochemistry and Molecular Biology, Inc.

Bioengineered transplantable porcine livers with re-endothelialized vasculature.

PubMed

Ko, In Kap; Peng, Li; Peloso, Andrea; Smith, Charesa J; Dhal, Abritee; Deegan, Daniel B; Zimmerman, Cindy; Clouse, Cara; Zhao, Weixin; Shupe, Thomas D; Soker, Shay; Yoo, James J; Atala, Anthony

2015-02-01

Donor shortage remains a continued challenge in liver transplantation. Recent advances in tissue engineering have provided the possibility of creating functional liver tissues as an alternative to donor organ transplantation. Small bioengineered liver constructs have been developed, however a major challenge in achieving functional bioengineered liver in vivo is the establishment of a functional vasculature within the scaffolds. Our overall goal is to bioengineer intact livers, suitable for transplantation, using acellular porcine liver scaffolds. We developed an effective method for reestablishing the vascular network within decellularized liver scaffolds by conjugating anti-endothelial cell antibodies to maximize coverage of the vessel walls with endothelial cells. This procedure resulted in uniform endothelial attachment throughout the liver vasculature extending to the capillary bed of the liver scaffold and greatly reduced platelet adhesion upon blood perfusion in vitro. The re-endothelialized livers, when transplanted to recipient pigs, were able to withstand physiological blood flow and maintained for up to 24 h. This study demonstrates, for the first time, that vascularized bioengineered livers, of clinically relevant size, can be transplanted and maintained in vivo, and represents the first step towards generating engineered livers for transplantation to patients with end-stage liver failure. Copyright © 2014 Elsevier Ltd. All rights reserved.

Successful Implantation of Bioengineered, Intrinsically Innervated, Human Internal Anal Sphincter

PubMed Central

Raghavan, Shreya; Gilmont, Robert R.; Miyasaka, Eiichi A.; Somara, Sita; Srinivasan, Shanthi; Teitelbaum, Daniel H; Bitar, Khalil N.

2011-01-01

Background & Aims To restore fecal continence, the weakened pressure of the internal anal sphincter (IAS) must be increased. We bioengineered intrinsically innervated human IAS, to emulate sphincteric physiology, in vitro. Methods We co-cultured human IAS circular smooth muscle with immortomouse fetal enteric neurons. We investigated the ability of bioengineered innervated human IAS, implanted in RAG1−/− mice, to undergo neovascularization and preserve the physiology of the constituent myogenic and neuronal components. Results The implanted IAS was neovascularized in vivo; numerous blood vessels were observed with no signs of inflammation or infection. Real-time force acquisition from implanted and pre-implant IAS showed distinct characteristics of IAS physiology. Features included the development of spontaneous myogenic basal tone; relaxation of 100% of basal tone in response to inhibitory neurotransmitter vasoactive intestinal peptide (VIP) and direct electrical field stimulation of the intrinsic innervation; inhibition of nitrergic and VIPergic EFS-induced relaxation (by antagonizing nitric oxide synthesis or receptor interaction); contraction in response to cholinergic stimulation with acetylcholine; and intact electromechanical coupling (evidenced by direct response to potassium chloride). Implanted, intrinsically innervated bioengineered human IAS tissue preserved the integrity and physiology of myogenic and neuronal components. Conclusion Intrinsically innervated human IAS bioengineered tissue can be successfully implanted in mice. This approach might be used to treat patients with fecal incontinence. PMID:21463628

Highly erodible terrain in agriculture land against chipped pruned branches. Or how to stop the soil erosion with low investment

NASA Astrophysics Data System (ADS)

Cerdà, A.

2009-04-01

The session on "Soil erosion and sediment control with vegetation and bioengineering on severely eroded terrain" pays special attention to the severe soil erosion suffered on steep slopes and erodible parent materials and soils. Within the last 20 years, in the Mediterranean lands, the citrus orchards were reallocated on steep slopes due to the urban development and better climatic and management conditions of the new plantations. The lack of vegetation cover on the new slope plantations of citrus resulted in high erosion rates. Those non-sustainable soil losses were measured by means of rainfall simulation experiments, Gerlach collectors, geomorphological transect and topographical measurements. The October 2007 and October 2008 rainy periods resulted in sheet, rill and gully erosion. Some recently planted orchards (2005) had the first pruning season in 2008. The pruned chipped branches reduced the soil losses to 50 % of the expected, although the litter (pruned branches) covered 4.67 % of the soil. This is why a research was developed by means of simulated rainfall experiments to determine the vegetation cover (litter, mainly leaves) to protect the soil to reach a sustainable erosion rate. Rainfall simulation experiments at 43 mm h-1 where performed on 1 m2 plots covered with 0, 3, 7, 15, 30, 45, 60, 80 and 100 % litter cover (pruned chipped branches) to determine the sustainable litter cover to avoid the soil losses. The results show that more that 45 % litter cover almost reduces the soil losses to negligible rates. The results confirm that 4 % of vegetation cover reduces the soil losses to 50 %. Key words: Agriculture land, erodible terrain, land management, citrus, erosion, Spain, Valencia, herbicides. Acknowledgements, We thanks the financial support of the Ministerio de Ciencia e Innovación by means of the project CGL2008-02879/BTE, "PERDIDA DE SUELO EN NUEVAS EXPLOTACIONES CITRICOLAS EN PENDIENTE. ESTRATEGIAS PARA EL CONTROL DE LA EROSION HIDRICA"

REMOTE SENSING FOR BIOENGINEERED CROPS-POTENTIAL APPLICATIONS

EPA Science Inventory

Crops bioengineered to contain toxins derived from Bacillus thuringensis (Bt) are under regulatory scrutiny by USEPA under the FIFRA legislation. The agency has declared these crops to be "in the public good" based on the reduced use of pesticides required for management of these...

Computational fluid dynamics - An introduction for engineers

NASA Astrophysics Data System (ADS)

Abbott, Michael Barry; Basco, David R.

An introduction to the fundamentals of CFD for engineers and physical scientists is presented. The principal definitions, basic ideas, and most common methods used in CFD are presented, and the application of these methods to the description of free surface, unsteady, and turbulent flow is shown. Emphasis is on the numerical treatment of incompressible unsteady fluid flow with primary applications to water problems using the finite difference method. While traditional areas of application like hydrology, hydraulic and coastal engineering and oceanography get the main emphasis, newer areas of application such as medical fluid dynamics, bioengineering, and soil physics and chemistry are also addressed. The possibilities and limitations of CFD are pointed out along with the relations of CFD to other branches of science.

Microengineering hydrogels for stem cell bioengineering and tissue regeneration.

PubMed

Wheeldon, Ian; Ahari, Amirhossein F; Khademhosseini, Ali

2010-12-01

The integration of microfabrication technologies with advanced biomaterials has led to the development of powerful tools to control the cellular microenvironment and the microarchitecture of engineered tissue constructs. Here we review this area, with a focus on the work accomplished in our laboratory. In particular, we discuss techniques to develop hydrogel microstructures for controlling cell aggregate formation to regulate stem cell behavior as well as a bottom-up and a top-down microengineering approach to creating biomimic tissue-like structures.

Microengineering hydrogels for stem cell bioengineering and tissue regeneration

PubMed Central

Wheeldon, Ian; Ahari, Amirhossein F.; Khademhosseini, Ali

2010-01-01

The integration of microfabrication technologies with advanced biomaterials has led to the development of powerful tools to control the cellular microenvironment and the microarchitecture of engineered tissue constructs. Here we review this area, with a focus on the work accomplished in our laboratory. In particular, we discuss techniques to develop hydrogel microstructures for controlling cell aggregate formation to regulate stem cell behavior as well as a bottom-up and a top-down microengineering approach to creating biomimic tissue-like structures. PMID:21344063

U.S. commercial space policies - Implications for developing countries

NASA Technical Reports Server (NTRS)

Gillam, Isaac T., IV; Stone, Barbara A.

1987-01-01

Recent U.S. policy developments on the commercial use of space are summarized and their international implications are considered. Attention is given to successful applications of technology developed in space, including an implantable cancer medication system, an implantable defibrillator, an ultrasonic residual stress monitor, and aquaculture treatment techniques. NASA projects involving bioengineering and rehabilitation applications are summarized, and plans to investigate high-temperature superconductors in space are addressed. Recent agreements entred into by NASA for space commercial studies are reviewed.

Nanocarbon surfaces for biomedicine

PubMed Central

Reina, Giacomo; Tamburri, Emanuela; Orlanducci, Silvia; Gay, Stefano; Matassa, Roberto; Guglielmotti, Valeria; Lavecchia, Teresa; Letizia Terranova, Maria; Rossi, Marco

2014-01-01

The distinctive physicochemical, mechanical and electrical properties of carbon nanostructures are currently gaining the interest of researchers working in bioengineering and biomedical fields. Carbon nanotubes, carbon dendrimers, graphenic platelets and nanodiamonds are deeply studied aiming at their application in several areas of biology and medicine.   Here we provide a summary of the carbon nanomaterials prepared in our labs and of the fabrication techniques used to produce several biomedical utilities, from scaffolds for tissue growth to cargos for drug delivery and to biosensors. PMID:24646883

POTENTIAL APPLICATIONS OF REMOTE SENSING TO BIOENGINEERED CROPS

EPA Science Inventory

Crops bioengineered to contain toxins derived from Bacillus thuringiensis (Bt) are subject to regulatory scrutiny by USEPA under the FIFRA legislation. The agency has declared these crops to be "in the public good" based on the reduced use of pesticides required for management of...

Teaching for adaptive expertise in biomedical engineering ethics.

PubMed

Martin, Taylor; Rayne, Karen; Kemp, Nate J; Hart, Jack; Diller, Kenneth R

2005-04-01

This paper considers an approach to teaching ethics in bioengineering based on the How People Learn (HPL) framework. Curricula based on this framework have been effective in mathematics and science instruction from the kindergarten to the college levels. This framework is well suited to teaching bioengineering ethics because it helps learners develop "adaptive expertise". Adaptive expertise refers to the ability to use knowledge and experience in a domain to learn in unanticipated situations. It differs from routine expertise, which requires using knowledge appropriately to solve routine problems. Adaptive expertise is an important educational objective for bioengineers because the regulations and knowledge base in the discipline are likely to change significantly over the course of their careers. This study compares the performance of undergraduate bioengineering students who learned about ethics for stem cell research using the HPL method of instruction to the performance of students who learned following a standard lecture sequence. Both groups learned the factual material equally well, but the HPL group was more prepared to act adaptively when presented with a novel situation.

Conscience dilemma: to become a bioengineer or to survive as a biologist.

PubMed

Selimoglu, Sureyya Mert

2014-01-01

Bioengineering is the consideration of biological problems from modern engineering, therefore money-oriented, perspective. Today, grant-giving bodies always favor bioengineering projects rather than pure biology projects (like those in ecology, entomology, etc.). Therefore, today's biologist is forced to be on the horns of a dilemma. They have to either submit a very powerful and valid reason for the proposal of their project, or change the project to one having a potential of money-based outcome. On the other hand, because of dealing with the living components of nature, conducting a research in pure biology is like a kind of worship. For this reason, from a believer scientist's view, a deviation (in terms of research) from biology to bioengineering can be considered like committing a sin. Unfortunately, today's wild capitalism has been bringing new sinners day by day, and this system will continue for the foreseeable future unless grant-giving bodies comprehend the real importance of pure biology.

Bioengineering solutions for neural repair and recovery in stroke.

PubMed

Modo, Michel; Ambrosio, Fabrisia; Friedlander, Robert M; Badylak, Stephen F; Wechsler, Lawrence R

2013-12-01

This review discusses emerging bioengineering opportunities for the treatment of stroke and their potential to build on current rehabilitation protocols. Bioengineering is a vast field that ranges from biomaterials to brain-computer interfaces. Biomaterials find application in the delivery of pharmacotherapies, as well as the emerging field of tissue engineering. For the treatment of stroke, these approaches have to be seen in the context of physical therapy in order to maximize functional outcomes. There is also an emergence of rehabilitation that engages engineering solutions, such as robot-assisted training, as well as brain-computer interfaces that can potentially assist in the case of paralysis. Stroke remains the main cause of adult disability with rehabilitation therapy being the focus for chronic impairments. Bioengineering is offering new opportunities to both support and synergize with currently available treatment options, and also promises to potentially dramatically improve available approaches. See the Video Supplementary Digital Content 1 (http://links.lww.com/CONR/A21).

Bioengineered vascular constructs as living models for in vitro cardiovascular research.

PubMed

Wolf, Frederic; Vogt, Felix; Schmitz-Rode, Thomas; Jockenhoevel, Stefan; Mela, Petra

2016-09-01

Cardiovascular diseases represent the most common cause of morbidity and mortality worldwide. In this review, we explore the potential of bioengineered vascular constructs as living models for in vitro cardiovascular research to advance the current knowledge of pathophysiological processes and support the development of clinical therapies. Bioengineered vascular constructs capable of recapitulating the cellular and mechanical environment of native vessels represent a valuable platform to study cellular interactions and signaling cascades, test drugs and medical devices under (patho)physiological conditions, with the additional potential benefit of reducing the number of animals required for preclinical testing. Copyright © 2016 Elsevier Ltd. All rights reserved.

78 FR 35041 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

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2013-06-11

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76 FR 69748 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

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2011-11-09

... Grossman, DDS, Scientific Review Officer, National Institute of Biomedical Imagin and Bioengineering... Bethesda Metro Station, Bethesda, MD 20814. Contact Person: Ruth Grossman, DDS, Scientific Review Officer...Continental Chicago, 505 North Michigan Avenue, Chicago, IL. Contact Person: Ruth Grossman, DDS, Scientific...

78 FR 55086 - Center for Scientific Review; Notice of Closed Meetings

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2013-09-09

...: Emerging Technologies and Training Neurosciences Integrated Review Group; Bioengineering of Neuroscience, Vision and Low Vision Technologies Study Section. Date: October 3-4, 2013. Time: 8:00 a.m. to 11:00 a.m... . Name of Committee: Bioengineering Sciences & Technologies Integrated Review Group; Biomaterials and...

DEVELOPMENT OF NEW TECHNOLOGY FOR RISK MANAGEMENT OF BIOENGINEERED CROPS

EPA Science Inventory

Crops bioengineered to contain toxins derived from Bacillus thuringensis (Bt) are under regulatory scrutiny by USEPA under the FIFRA legislation. The agency has declared these crops to be "in the public good" based on the reduced use of pesticides required for management of these...

Novel chemicals from plants via bioengineering. An overview.

PubMed

Kolodziejczyk, P P; Shahidi, F

1999-01-01

Novel chemicals were traditionally extracted from medicinal plants or produced synthetically. However, new development in the field of bioengineering has allowed production of novel products from plants such as edible and industrial oils as well as specific chemicals which could be used as foods with remedial effects.

Social norms of "good" design: Interdisciplinary perspectives from a survey of engineers and clinicians in bioengineering.

PubMed

Johnson, Angela N

2016-08-01

In bioengineering training for new researchers and engineers, a great deal of time is spent discussing what constitutes "good" design. Conceptualization of good design, however, varies widely across interdisciplinary team members, with potential to both foster innovation or lead to unproductive conflict. To explore how groups central to bioengineering teams (physicians/clinicians and engineers/physicists) conceptualize good design, we asked 176 professionals in bioengineering to complete a comprehensive online survey including items designed to assess cognitive and moral foundations (validated MFQ30 tool) and custom items assessing perceptions on good design in three areas (good design characteristics, reputation of design approvers, and perceived design patient/consumer suitability). Of those that responded, 82 completed all quantitative survey sections and were included in this preliminary analysis. Correlations between response areas were examined to explore the possible links between cognitive and moral biases and perspectives on good design. The survey results indicated that both groups were more conservative than average Americans based on previous reports, and clinicians scored higher on average for all MFQ30 domains. Numerous significant correlations with good design were observed among clinicians, while engineers/physicists most closely correlated good design with prescriber approval and scientific/technical literature. The exploratory analysis demonstrated the potential utility of sociological frameworks to explore relationships in design thinking with potential utility to stimulate thriving conversation on team-based design thinking in bioengineering education and practice.

Simulation of a Congress at the Chair of Biology II in Bioengineering

NASA Astrophysics Data System (ADS)

Naranjo, A. V.; Reznichenco, V.; López, N.; Hernández, R.; Bajinay, S.

2007-11-01

This work has been developed in the Chair of Biology II, the curricular contents of which correspond to Human Anatomy. This subject is taught in the second semester of the second year of studies in Bioengineering. Our main objective is that the students attending the course may integrate the syllabus contents of Anatomy with those of other subjects in the career. Ever since 1998 we have organized a congress named Congreso Intracátedra de Biología II (Intra Chair Congress on Biology II). This is the last assignment in the semester and is compulsory for regular students of the subject. It consists in simulating a scientific congress with international characteristics. The guidelines for the congress are made known to the students at the beginning of the semester. In groups of up to three members, the students must undertake a work that relates aspects of Anatomy with Bioengineering. Students are expected to investigate on diagnostic and/or therapeutic technology in order to write a paper that must be accepted in advance of the event. The presentation of the work must be made through PowerPoint. The originality of the research work done and the wide range of topics selected are surprising. Problems are tackled from the standpoints both of the various medical fields and of bioengineering despite the fact that they are just students of the second year in Bioengineering.

Surface Plasmon Resonance: A Versatile Technique for Biosensor Applications

PubMed Central

Nguyen, Hoang Hiep; Park, Jeho; Kang, Sebyung; Kim, Moonil

2015-01-01

Surface plasmon resonance (SPR) is a label-free detection method which has emerged during the last two decades as a suitable and reliable platform in clinical analysis for biomolecular interactions. The technique makes it possible to measure interactions in real-time with high sensitivity and without the need of labels. This review article discusses a wide range of applications in optical-based sensors using either surface plasmon resonance (SPR) or surface plasmon resonance imaging (SPRI). Here we summarize the principles, provide examples, and illustrate the utility of SPR and SPRI through example applications from the biomedical, proteomics, genomics and bioengineering fields. In addition, SPR signal amplification strategies and surface functionalization are covered in the review. PMID:25951336

78 FR 24223 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

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2013-04-24

... Imaging and Bioengineering Special Emphasis Panel; Center for Multiscale Simulations in the Human..., Bethesda, MD 20892, (Virtual Meeting). Contact Person: John K. Hayes, Ph.D., Scientific Review Officer... Boulevard, Room 959, Bethesda, MD 20892, 301-451-3398, [email protected] . Dated: April 18, 2013. David...

Development of an Interdisciplinary Undergraduate Bioengineering Program at Lehigh University

ERIC Educational Resources Information Center

Herz, Lori; Russo, M. Jean; Ou-Yang, H. Daniel; El-Aasser, Mohamed; Jagota, Anand; Tatic-Lucic, Svetlana; Ochs, John

2011-01-01

The undergraduate Bioengineering Program at Lehigh University was established as part of the university's Bioscience and Biotechnology Initiative with support from the National Science Foundation through a grant from its Division of Engineering Education and Centers (EEC). The objective here is to describe the program development and…

Using biomimetic cell wall models to identify new plant lignin bioengineering targets for improving forage and biomass utilization

USDA-ARS?s Scientific Manuscript database

Bioengineering of lignin to contain atypical components derived from other metabolic pathways is increasingly being pursued to custom design lignified cell walls that are inherently more digestible by livestock or more easily pretreated and saccharified for biofuel production. Because plants produce...

78 FR 58547 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

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78 FR 46995 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

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2013-08-02

...) and 552b(c)(6), Title 5 U.S.C., as amended. The grant applications and the discussions could disclose... concerning individuals associated with the grant applications, the disclosure of which would constitute a... Imaging and Bioengineering Special Emphasis Panel Computer Integrated Systems for Microscopy...

An Introductory Course in Bioengineering and Biotechnology for Chemical Engineering Sophomores

ERIC Educational Resources Information Center

O'Connor, Kim C.

2007-01-01

Advances in the biological sciences necessitate the training of chemical engineers to translate these fundamental discoveries into applications that will benefit society. Accordingly, Tulane University revised its core chemical engineering curriculum in 2005 to include a new introductory course in bioengineering and biotechnology for sophomores.…

78 FR 76843 - National Institute of Biomedical Imaging and Bioengineering (NIBIB) Announcement of Requirements...

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2013-12-19

... NIBIB Design by Biomedical Undergraduate Teams (DEBUT) Challenge Authority: 15 U.S.C. 3719. SUMMARY: The National Institute of Biomedical Imaging and Bioengineering (NIBIB) DEBUT Challenge is open to teams of... students valuable experiences such as working in teams, identifying unmet clinical needs, and designing...

A High Diversity in Chitinolytic and Chitosanolytic Species and Enzymes and Their Oligomeric Products Exist in Soil with a History of Chitin and Chitosan Exposure

PubMed Central

Nampally, Malathi; Rajulu, M. B. Govinda; Gillet, Dominique; Suryanarayanan, T. S.; Moerschbacher, Bruno B.

2015-01-01

Chitin is one of the most abundant biomolecules on earth, and its partially de-N-acetylated counterpart, chitosan, is one of the most promising biotechnological resources due to its diversity in structure and function. Recently, chitin and chitosan modifying enzymes (CCMEs) have gained increasing interest as tools to engineer chitosans with specific functions and reliable performance in biotechnological and biomedical applications. In a search for novel CCME, we isolated chitinolytic and chitosanolytic microorganisms from soils with more than ten-years history of chitin and chitosan exposure and screened them for chitinase and chitosanase isoenzymes as well as for their patterns of oligomeric products by incubating their secretomes with chitosan polymers. Of the 60 bacterial strains isolated, only eight were chitinolytic and/or chitosanolytic, while 20 out of 25 fungal isolates were chitinolytic and/or chitosanolytic. The bacterial isolates produced rather similar patterns of chitinolytic and chitosanolytic enzymes, while the fungal isolates produced a much broader range of different isoenzymes. Furthermore, diverse mixtures of oligosaccharides were formed when chitosan polymers were incubated with the secretomes of select fungal species. Our study indicates that soils with a history of chitin and chitosan exposure are a good source of novel CCME for chitosan bioengineering. PMID:26273652

A High Diversity in Chitinolytic and Chitosanolytic Species and Enzymes and Their Oligomeric Products Exist in Soil with a History of Chitin and Chitosan Exposure.

PubMed

Nampally, Malathi; Rajulu, M B Govinda; Gillet, Dominique; Suryanarayanan, T S; Moerschbacher, Bruno B

2015-01-01

Chitin is one of the most abundant biomolecules on earth, and its partially de-N-acetylated counterpart, chitosan, is one of the most promising biotechnological resources due to its diversity in structure and function. Recently, chitin and chitosan modifying enzymes (CCMEs) have gained increasing interest as tools to engineer chitosans with specific functions and reliable performance in biotechnological and biomedical applications. In a search for novel CCME, we isolated chitinolytic and chitosanolytic microorganisms from soils with more than ten-years history of chitin and chitosan exposure and screened them for chitinase and chitosanase isoenzymes as well as for their patterns of oligomeric products by incubating their secretomes with chitosan polymers. Of the 60 bacterial strains isolated, only eight were chitinolytic and/or chitosanolytic, while 20 out of 25 fungal isolates were chitinolytic and/or chitosanolytic. The bacterial isolates produced rather similar patterns of chitinolytic and chitosanolytic enzymes, while the fungal isolates produced a much broader range of different isoenzymes. Furthermore, diverse mixtures of oligosaccharides were formed when chitosan polymers were incubated with the secretomes of select fungal species. Our study indicates that soils with a history of chitin and chitosan exposure are a good source of novel CCME for chitosan bioengineering.

A draft map of the human ovarian proteome for tissue engineering and clinical applications.

PubMed

Ouni, Emna; Vertommen, Didier; Chiti, Maria Costanza; Dolmans, Marie-Madeleine; Amorim, Christiani Andrade

2018-02-23

Fertility preservation research in women today is increasingly taking advantage of bioengineering techniques to develop new biomimetic materials and solutions to safeguard ovarian cell function and microenvironment in vitro and in vivo. However, available data on the human ovary are limited and fundamental differences between animal models and humans are hampering researchers in their quest for more extensive knowledge of human ovarian physiology and key reproductive proteins that need to be preserved. We therefore turned to multi-dimensional label-free mass spectrometry to analyze human ovarian cortex, as it is a high-throughput and conclusive technique providing information on the proteomic composition of complex tissues like the ovary. In-depth proteomic profiling through two-dimensional liquid chromatography-mass spectrometry, western blot, histological and immunohistochemical analyses, and data mining helped us to confidently identify 1,508 proteins. Moreover, our method allowed us to chart the most complete representation so far of the ovarian matrisome, defined as the ensemble of extracellular matrix proteins and associated factors, including more than 80 proteins. In conclusion, this study will provide a better understanding of ovarian proteomics, with a detailed characterization of the ovarian follicle microenvironment, in order to enable bioengineers to create biomimetic scaffolds for transplantation and three-dimensional in vitro culture. By publishing our proteomic data, we also hope to contribute to accelerating biomedical research into ovarian health and disease in general. Published under license by The American Society for Biochemistry and Molecular Biology, Inc.

Adult Human Gingival Epithelial Cells as a Source for Whole-tooth Bioengineering

PubMed Central

Angelova Volponi, A.; Kawasaki, M.; Sharpe, P.T.

2013-01-01

Teeth develop from interactions between embryonic oral epithelium and neural-crest-derived mesenchyme. These cells can be separated into single-cell populations and recombined to form normal teeth, providing a basis for bioengineering new teeth if suitable, non-embryonic cell sources can be identified. We show here that cells can be isolated from adult human gingival tissue that can be expanded in vitro and, when combined with mouse embryonic tooth mesenchyme cells, form teeth. Teeth with developing roots can be produced from this cell combination following transplantation into renal capsules. These bioengineered teeth contain dentin and enamel with ameloblast-like cells and rests of Malassez of human origin. PMID:23458883

Filtration stability of living brush mattresses at navigable waterways

NASA Astrophysics Data System (ADS)

Sokopp, Manuel

2017-04-01

According to the guidelines of the Federal Waterways Engineering and Research Institute in Germany, waterway construction buildings, which include soil bioengineering structures, must be stable against soil displacements. Therefore, willow brush mattresses were tested for their filtration stability in a specially developed process which is based on the testing of geotextiles and armourstones used for navigable waterway constructions. In March 2016 willow brush mattresses made of white (Salix alba L.) or basket willows (Salix viminalis L.) were planted in 16 sample boxes, each with a cross-section area of 30x30 cm. For the tests on filtration stability, the upper 20 cm of the box were separated and placed upside down into a device in which the sample box could be flowed through from below. When a water column of 50 cm above the sample was reached, the water outlet was opened so the water flowed through the sample in the opposite direction, thus simulating drawdown. By the measurements of the pressure sensors above and below the sample, the coefficient of permeability k of the rooted soil during drawdown could be calculated. After this hydropeaking cycle, the soil material that was rinsed out through the willow branches was collected, weighed after drying until weight constancy, and compared with the dry mass of the retained soil material to calculate the share of the total mass. These filtration stability tests were carried out directly after planting the sample boxes, as well as one, three and six months afterwards, each test series with four reruns per willow species. Over time, the increasing root penetration resulted in a significant reduction in the permeability and in more retained soil material.

75 FR 35820 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-23

... Imaging and Bioengineering Special Emphasis Panel Decision Support Systems and Comparative Effectiveness Research (ARRA). Date: July 23, 2010. Time: 12 p.m. to 5 p.m. Agenda: To review and evaluate grant... Assistance Program Nos. 93.701, ARRA Related Biomedical Research and Research Support Awards, National...

76 FR 19104 - Center for Scientific Review; Notice of Closed Meetings

Federal Register 2010, 2011, 2012, 2013, 2014

2011-04-06

... Behavioral and Social Sciences. Date: May 16, 2011. Time: 8 a.m. to 5 p.m. Agenda: To review and evaluate... of Committee: Surgical Sciences, Biomedical Imaging and Bioengineering Integrated Review Group; Bioengineering, Technology and Surgical Sciences Study Section. Date: May 16-17, 2011. Time:8 a.m. to 5 p.m...

Biomimetic cell wall model studies to identify new lignin bioengineering targets for improving biomass susceptibility to pretreatment and enzymatic saccharification

USDA-ARS?s Scientific Manuscript database

Increasingly, bioengineering of lignin to contain atypical building blocks from other metabolic pathways is being pursued to custom-design lignin that is easier to remove by chemical pretreatments and less inhibitory toward polysaccharide saccharification. Because plants produce such a diverse array...

Identifying new lignin bioengineering targets for improving biomass and forage utilization: a review of biomimetic studies with maize cell walls

USDA-ARS?s Scientific Manuscript database

Bioengineering of lignin to contain atypical components derived from other metabolic pathways is increasingly being pursued to custom design lignified cell walls that are more readily pretreated and saccharified for biofuel production or easily digested by livestock. Because plants produce such a di...

Considerations for restoring temperate forests of tomorrow: Forest restoration, assisted migration, and bioengineering

Treesearch

Kas Dumroese; Mary I. Williams; John A. Stanturf; Brad St. Clair

2015-01-01

Tomorrow’s forests face extreme pressures from contemporary climate change, invasive pests, and anthropogenic demands for other land uses. These pressures, collectively, demand land managers to reassess current and potential forest management practices. We discuss three considerations, functional restoration, assisted migration, and bioengineering, which are currently...

Immobilized enzymes to convert N-sulfo, N-acetyl heparosan to a critical intermediate in the production of bioengineered heparin.

PubMed

Xiong, Jian; Bhaskar, Ujjwal; Li, Guoyun; Fu, Li; Li, Lingyun; Zhang, Fuming; Dordick, Jonathan S; Linhardt, Robert J

2013-09-10

Heparin is a critically important anticoagulant drug that is prepared from pig intestine. In 2007-2008, there was a crisis in the heparin market when the raw material was adulterated with the toxic polysaccharide, oversulfated chondroitin sulfate, which was associated with 100 deaths in the U.S. alone. As the result of this crisis, our laboratory and others have been actively pursuing alternative sources for this critical drug, including synthetic heparins and bioengineered heparin. In assessing the bioengineering processing costs it has become clear that the use of both enzyme-catalyzed cofactor recycling and enzyme immobilization will be needed for commercialization. In the current study, we examine the use of immobilization of C₅-epimerase and 2-O-sulfotransferase involved in the first enzymatic step in the bioengineered heparin process, as well as arylsulfotransferase-IV involved in cofactor recycling in all three enzymatic steps. We report the successful immobilization of all three enzymes and their use in converting N-sulfo, N-acetyl heparosan into N-sulfo, N-acetyl 2-O-sulfo heparin. Copyright © 2013 Elsevier B.V. All rights reserved.

Lung bioengineering: physical stimuli and stem/progenitor cell biology interplay towards biofabricating a functional organ.

PubMed

Nonaka, Paula N; Uriarte, Juan J; Campillo, Noelia; Oliveira, Vinicius R; Navajas, Daniel; Farré, Ramon

2016-11-28

A current approach to obtain bioengineered lungs as a future alternative for transplantation is based on seeding stem cells on decellularized lung scaffolds. A fundamental question to be solved in this approach is how to drive stem cell differentiation onto the different lung cell phenotypes. Whereas the use of soluble factors as agents to modulate the fate of stem cells was established from an early stage of the research with this type of cells, it took longer to recognize that the physical microenvironment locally sensed by stem cells (e.g. substrate stiffness, 3D architecture, cyclic stretch, shear stress, air-liquid interface, oxygenation gradient) also contributes to their differentiation. The potential role played by physical stimuli would be particularly relevant in lung bioengineering since cells within the organ are physiologically subjected to two main stimuli required to facilitate efficient gas exchange: air ventilation and blood perfusion across the organ. The present review focuses on describing how the cell mechanical microenvironment can modulate stem cell differentiation and how these stimuli could be incorporated into lung bioreactors for optimizing organ bioengineering.

Insect natural products and processes: new treatments for human disease.

PubMed

Ratcliffe, Norman A; Mello, Cicero B; Garcia, Eloi S; Butt, Tariq M; Azambuja, Patricia

2011-10-01

In this overview, some of the more significant recent developments in bioengineering natural products from insects with use or potential use in modern medicine are described, as well as in utilisation of insects as models for studying essential mammalian processes such as immune responses to pathogens. To date, insects have been relatively neglected as sources of modern drugs although they have provided valuable natural products, including honey and silk, for at least 4-7000 years, and have featured in folklore medicine for thousands of years. Particular examples of Insect Folk Medicines will briefly be described which have subsequently led through the application of molecular and bioengineering techniques to the development of bioactive compounds with great potential as pharmaceuticals in modern medicine. Insect products reviewed have been derived from honey, venom, silk, cantharidin, whole insect extracts, maggots, and blood-sucking arthropods. Drug activities detected include powerful antimicrobials against antibiotic-resistant bacteria and HIV, as well as anti-cancer, anti-angiogenesis and anti-coagulant factors and wound healing agents. Finally, the many problems in developing these insect products as human therapeutic drugs are considered and the possible solutions emerging to these problems are described. Copyright © 2011 Elsevier Ltd. All rights reserved.

Unlocking the brain's mysteries: Meet the bioengineers behind next-generation neural devices

ScienceCinema

Pannu, Sat; Shah, Kedar; Tolosa, Vanessa; Tooker, Angela

2018-01-16

Bioengineers in the Neural Technologies Group at Lawrence Livermore are creating the next generation of clinical- and research-quality neural interfaces. The goal is to gain a fundamental understanding of neuroscience, treat a variety of debilitating neurological disorders (such as Parkinson's, depression, and epilepsy), and restore lost neural functions such as sight, hearing, and mobility.

Students' Strengths and Weaknesses in Evaluating Technical Arguments as Revealed through Implementing Calibrated Peer Review™ in a Bioengineering Laboratory

ERIC Educational Resources Information Center

Volz, Tracy; Saterbak, Ann

2009-01-01

In engineering fields, students are expected to construct technical arguments that demonstrate a discipline's expected use of logic, evidence, and conventions. Many undergraduate bioengineering students struggle to enact the appropriate argument structures when they produce technical posters. To address this problem we implemented Calibrated Peer…

Unlocking the brain's mysteries: Meet the bioengineers behind next-generation neural devices

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pannu, Sat; Shah, Kedar; Tolosa, Vanessa

Bioengineers in the Neural Technologies Group at Lawrence Livermore are creating the next generation of clinical- and research-quality neural interfaces. The goal is to gain a fundamental understanding of neuroscience, treat a variety of debilitating neurological disorders (such as Parkinson's, depression, and epilepsy), and restore lost neural functions such as sight, hearing, and mobility.

Assessing the Pedagogical Impact of the VaNTH Engineering Research Center on Faculty and Postdoctoral Professionals

ERIC Educational Resources Information Center

Cox, Monica; Cawthorne, James; McNeill, Nathan; Cekic, Osman; Frye, Matthew; Stacer, Melissa

2011-01-01

From 1999 to 2007, the Vanderbilt-Northwestern-Texas-Harvard/MIT (VaNTH) Engineering Research Center focused on improving bioengineering education through the applications of learning science, learning technology, and assessment and evaluation within the domain of bioengineering. This paper discusses results from a survey to explore the impact of…

Micro-thermocouple probe for measurement of cellular thermal responses.

PubMed

Watanabe, M; Kakuta, N; Mabuchi, K; Yamada, Y

2005-01-01

We have produced micro-thermocouple probes for the measurement of cellular thermal responses. Cells generate heat with their metabolisms and more heat with reactions to a certain physical or chemical stimulation. Therefore, the analysis of the cellular thermal responses would provide new physiological information. However, a real-time thermal measurement technique on a target of a single cell has not been established. In this study, glass micropipettes, which are widely used in bioengineering and medicine, are used for the base of the thermocouple probes. Using microfabrication techniques, the junction of two different metal films is formed at the micropipette tip with a diameter of 1 μm. This probe can inject a chemical substance into a cell and to detect its subsequent temperature changes simultaneously.

A review of rapid prototyping (RP) techniques in the medical and biomedical sector.

PubMed

Webb, P A

2000-01-01

The evolution of rapid prototyping (RP) technology is briefly discussed, and the application of RP technologies to the medical sector is reviewed. Although the use of RP technology has been slow arriving in the medical arena, the potential of the technique is seen to be widespread. Various uses of the technology within surgical planning, prosthesis development and bioengineering are discussed. Some possible drawbacks are noted in some applications, owing to the poor resolution of CT slice data in comparison with that available on RP machines, but overall, the methods are seen to be beneficial in all areas, with one early report suggesting large improvements in measurement and diagnostic accuracy as a result of using RP models.

Bioengineered Lungs: A Challenge and An Opportunity.

PubMed

Farré, Ramon; Otero, Jordi; Almendros, Isaac; Navajas, Daniel

2018-01-01

Lung biofabrication is a new tissue engineering and regenerative development aimed at providing organs for potential use in transplantation. Lung biofabrication is based on seeding cells into an acellular organ scaffold and on culturing them in an especial purpose bioreactor. The acellular lung scaffold is obtained by decellularizing a non-transplantable donor lung by means of conventional procedures based on application of physical, enzymatic and detergent agents. To avoid immune recipient's rejection of the transplanted bioengineered lung, autologous bone marrow/adipose tissue-derived mesenchymal stem cells, lung progenitor cells or induced pluripotent stem cells are used for biofabricating the bioengineered lung. The bioreactor applies circulatory perfusion and mechanical ventilation with physiological parameters to the lung during biofabrication. These physical stimuli to the organ are translated into the stem cell local microenvironment - e.g. shear stress and cyclic stretch - so that cells sense the physiological conditions in normally functioning mature lungs. After seminal proof of concept in a rodent model was published in 2010, the hypothesis that lungs can be biofabricated is accepted and intense research efforts are being devoted to the topic. The current experimental evidence obtained so far in animal tests and in ex vivo human bioengineered lungs suggests that the date of first clinical tests, although not immediate, is coming. Lung bioengineering is a disrupting concept that poses a challenge for improving our basic science knowledge and is also an opportunity for facilitating lung transplantation in future clinical translation. Copyright © 2017 SEPAR. Publicado por Elsevier España, S.L.U. All rights reserved.

Bioengineered Lacrimal Gland Organ Regeneration in Vivo

PubMed Central

Hirayama, Masatoshi; Tsubota, Kazuo; Tsuji, Takashi

2015-01-01

The lacrimal gland plays an important role in maintaining a homeostatic environment for healthy ocular surfaces via tear secretion. Dry eye disease, which is caused by lacrimal gland dysfunction, is one of the most prevalent eye disorders and causes ocular discomfort, significant visual disturbances, and a reduced quality of life. Current therapies for dry eye disease, including artificial tear eye drops, are transient and palliative. The lacrimal gland, which consists of acini, ducts, and myoepithelial cells, develops from its organ germ via reciprocal epithelial-mesenchymal interactions during embryogenesis. Lacrimal tissue stem cells have been identified for use in regenerative therapeutic approaches aimed at restoring lacrimal gland functions. Fully functional organ replacement, such as for tooth and hair follicles, has also been developed via a novel three-dimensional stem cell manipulation, designated the Organ Germ Method, as a next-generation regenerative medicine. Recently, we successfully developed fully functional bioengineered lacrimal gland replacements after transplanting a bioengineered organ germ using this method. This study represented a significant advance in potential lacrimal gland organ replacement as a novel regenerative therapy for dry eye disease. In this review, we will summarize recent progress in lacrimal regeneration research and the development of bioengineered lacrimal gland organ replacement therapy. PMID:26264034

Immune responses to bioengineered organs

PubMed Central

Ochando, Jordi; Charron, Dominique; Baptista, Pedro M.; Uygun, Basak E.

2017-01-01

Purpose of review Organ donation in the United States registered 9079 deceased organ donors in 2015. This high percentage of donations allowed organ transplantation in 29 851 recipients. Despite increasing numbers of transplants performed in comparison with previous years, the numbers of patients that are in need for a transplant increase every year at a higher rate. This reveals that the discrepancy between the demand and availability of organs remains fundamental problem in organ transplantation. Recent findings Development of bioengineered organs represents a promising approach to increase the pool of organs for transplantation. The technology involves obtaining complex three-dimensional scaffolds that support cellular activity and functional remodeling though tissue recellularization protocols using progenitor cells. This innovative approach integrates cross-thematic approaches from specific areas of transplant immunology, tissue engineering and stem cell biology, to potentially manufacture an unlimited source of donor organs for transplantation. Summary Although bioengineered organs are thought to escape immune recognition, the potential immune reactivity toward each of its components has not been studied in detail. Here, we summarize the host immune response toward different progenitor cells and discuss the potential implications of using nonself biological scaffolds to develop bioengineered organs. PMID:27926545

Biomimetic chemical sensors using bioengineered olfactory and taste cells.

PubMed

Du, Liping; Zou, Ling; Zhao, Luhang; Wang, Ping; Wu, Chunsheng

2014-01-01

Biological olfactory and taste systems are natural chemical sensing systems with unique performances for the detection of environmental chemical signals. With the advances in olfactory and taste transduction mechanisms, biomimetic chemical sensors have achieved significant progress due to their promising prospects and potential applications. Biomimetic chemical sensors exploit the unique capability of biological functional components for chemical sensing, which are often sourced from sensing units of biological olfactory or taste systems at the tissue level, cellular level, or molecular level. Specifically, at the cellular level, there are mainly two categories of cells have been employed for the development of biomimetic chemical sensors, which are natural cells and bioengineered cells, respectively. Natural cells are directly isolated from biological olfactory and taste systems, which are convenient to achieve. However, natural cells often suffer from the undefined sensing properties and limited amount of identical cells. On the other hand, bioengineered cells have shown decisive advantages to be applied in the development of biomimetic chemical sensors due to the powerful biotechnology for the reconstruction of the cell sensing properties. Here, we briefly summarized the most recent advances of biomimetic chemical sensors using bioengineered olfactory and taste cells. The development challenges and future trends are discussed as well.

Bioengineering applied to erosion and stability control in the North Apennines (Emilia-Romagna Region, Italy): a check about critical aspects of the works.

NASA Astrophysics Data System (ADS)

Selli, Lavinia; Cavazza, Claudio; Pavanelli, Donatella

2013-04-01

Because of its geological structure, in the Emilia-Romagna Region over 32,000 landslides have been identified. Several works have been made in order to control mass movement's dynamics and to secure of Reno and Lamone Mountain Basin Rivers, the road network and near by villages and towns. Most of the control works dealt with bioengineering practices: palisades piles, geotextiles, seedings, surface flow control works, dikes within main drainage ditches. In order to check about critical aspects related to the use of these techniques in the Apennines, a survey in this basins was designed with specific interest in the several kinds of works realised, in which plant species were mostly used and in the factors that affected the success or failure of the works. Territory encompasses steep slopes covered with woods to low reliefs covered with grasslands. It is characterized by prevailing clays, inducing instability, and arenaceous lithology with impermeable soils; drainage density is quite high and hillsides suffer extensive and severe erosion and slope stability problems. Chestnut woods mainly represent land use at higher altitudes, while coppice, pastures and crops are present on milder hillsides. The remaining part of the basin is covered by vineyards, orchards, ponds and urban areas, which are basically located in the valley floor. Precipitation events mainly consist of rainfall ranging between 950-1015 mm per year; few snowfalls occur during winter and a long dry season lasts from June until September. We have analyzed 187 works designed mainly for the consolidation of slope instabilities through a widespread enhancement of the vegetation cover. The surveyed works are classified as a function of their building features: it can be seen that cribwalls and palisades are by far the most common types, being the 24% and the 34% respectively of the works. As far as the most adopted plant species, they were silver willow (Salix alba), Spanish Broom (Spartium Junceum) and purple willow (Salix purpurea). Only the 25% of the interventions was accomplished by the use of secondary plant species, as tamarisk (Tamarix spp.,) blackthorn (Prunus spinosa) , whitethorn (Crataegus spp.), sea-buckthorn (Hipphopae rhamnoides), wild pear (Pyrus pyraster), cottonwood (Populus nigra), eglantine (Rosa spp.), goat-willow (Salix caprea) and cornel (Cornus sanguinea). Better results were achieved with Spanish Broom, a very rural plant that can effectively colonise even poor soils like badlands; as a matter of fact, more than the 75% of the interventions had positive outcomes The efficacy of the consolidation work by the presence of living structures point out an increase of the stability of those interventions older than 4 years, with taking root species present from 54% to 78%. So far, the construction and the reliability of the works have been monitored, in order to capture critical aspects for the success of works and to build a geo-referenced data base of the existing works and their status.

Regenerative immunology: the immunological reaction to biomaterials.

PubMed

Cravedi, Paolo; Farouk, Samira; Angeletti, Andrea; Edgar, Lauren; Tamburrini, Riccardo; Duisit, Jerome; Perin, Laura; Orlando, Giuseppe

2017-12-01

Regenerative medicine promises to meet two of the most urgent needs of modern organ transplantation, namely immunosuppression-free transplantation and an inexhaustible source of organs. Ideally, bioengineered organs would be manufactured from a patient's own biomaterials-both cells and the supporting scaffolding materials in which cells would be embedded and allowed to mature to eventually regenerate the organ in question. While some groups are focusing on the feasibility of this approach, few are focusing on the immunogenicity of the scaffolds that are being developed for organ bioengineering purposes. This review will succinctly discuss progress in the understanding of immunological characteristics and behavior of different scaffolds currently under development, with emphasis on the extracellular matrix scaffolds obtained decellularized animal or human organs which seem to provide the ideal template for bioengineering purposes. © 2017 Steunstichting ESOT.

Tissue Engineering Using Transfected Growth-Factor Genes

NASA Technical Reports Server (NTRS)

Madry, Henning; Langer, Robert S.; Freed, Lisa E.; Trippel, Stephen; Vunjak-Novakovic, Gordana

2005-01-01

A method of growing bioengineered tissues includes, as a major component, the use of mammalian cells that have been transfected with genes for secretion of regulator and growth-factor substances. In a typical application, one either seeds the cells onto an artificial matrix made of a synthetic or natural biocompatible material, or else one cultures the cells until they secrete a desired amount of an extracellular matrix. If such a bioengineered tissue construct is to be used for surgical replacement of injured tissue, then the cells should preferably be the patient s own cells or, if not, at least cells matched to the patient s cells according to a human-leucocyteantigen (HLA) test. The bioengineered tissue construct is typically implanted in the patient's injured natural tissue, wherein the growth-factor genes enhance metabolic functions that promote the in vitro development of functional tissue constructs and their integration with native tissues. If the matrix is biodegradable, then one of the results of metabolism could be absorption of the matrix and replacement of the matrix with tissue formed at least partly by the transfected cells. The method was developed for articular chondrocytes but can (at least in principle) be extended to a variety of cell types and biocompatible matrix materials, including ones that have been exploited in prior tissue-engineering methods. Examples of cell types include chondrocytes, hepatocytes, islet cells, nerve cells, muscle cells, other organ cells, bone- and cartilage-forming cells, epithelial and endothelial cells, connective- tissue stem cells, mesodermal stem cells, and cells of the liver and the pancreas. Cells can be obtained from cell-line cultures, biopsies, and tissue banks. Genes, molecules, or nucleic acids that secrete factors that influence the growth of cells, the production of extracellular matrix material, and other cell functions can be inserted in cells by any of a variety of standard transfection techniques.

Kidney regeneration: Where we are and future perspectives

PubMed Central

Zambon, Joao Paulo; Magalhaes, Renata S; Ko, Inkap; Ross, Christina L; Orlando, Giuseppe; Peloso, Andrea; Atala, Anthony; Yoo, James J

2014-01-01

In 2012, about 16487 people received kidney transplants in the United States, whereas 95022 candidates were on the waiting list by the end of the year. Despite advances in renal transplant immunology, approximately 40% of recipients will die or lose graft within 10 years. The limitations of current therapies for renal failure have led researchers to explore the development of modalities that could improve, restore, or replace the renal function. The aim of this paper is to describe a reasonable approach for kidney regeneration and review the current literature regarding cell sources and mechanisms to develop a bioengineering kidney. Due to kidneys peculiar anatomy, extracellular matrix based scaffolds are rational starting point for their regeneration. The perfusion of detergents through the kidney vasculature is an efficient method for delivering decellularizing agents to cells and for removing of cellular material from the tissue. Many efforts have focused on the search of a reliable cell source to provide enrichment for achieving stable renal cell systems. For an efficient bioengineered kidney, these cells must be attached to the organ and then maturated into the bioractors, which simulates the human body environment. A functional bioengineered kidney is still a big challenge for scientists. In the last ten years we have got many improvements on the field of solid organ regeneration; however, we are still far away from the main target. Currently, regenerative centers worldwide have been striving to find feasible strategies to develop bioengineered kidneys. Cell-scaffold technology gives hope to end-stage renal disease patients who struggle with morbidity and mortality due to extended periods on dialysis or immunosupression. The potential of bioengineered organ is to provide a reliable source of organs, which can be refunctionalized and transplanted. PMID:25332894

The interaction between biology and the management of aquatic macrophytes

USGS Publications Warehouse

Nichols, S.A.

1991-01-01

'Management' refers to controlling nuisance aquatic species and to restoring or restructing aquatic plant communities. Producing stable, diverse, aquatic plant communities containing a high percentage of desirable species is a primary management goal. There are a variety of techniques including harvesting, herbicides, water-level fluctuation, sediment alteration, nutrient limitation, light alteration, and biological controls which can be used for managing macrophytes. These techniques are briefly reviewed along with discussions of biological considerations important to the efficacy of the technique and the environmental impacts of the technique. There is a growing interest in restoring and restructing aquatic plant communities. Techniques for community restoration are discussed as are emerging management technologies using growth regulators and bioengineering. New management technologies will probably be limited by costs and environmental impacts. In the near future, better macrophyte management will come through better planning and more effective use of present technology. The challenge is to make current planning and management techniques more effective through increased biological inputs. The potential for biological input ranges from subcellular biology to species biology, to community and ecosystem biology. Some information needs are identified. ?? 1991.

Clinical engineering in Romania. The coming of age.

PubMed

Naianu, B P; Negoescu, R

Biomedical engineering (BME) includes clinical engineering and bioengineering. Bioengineering is academically oriented towards theory and research in biology using the methods of exact sciences such as maths and physics, while clinical engineering (CE) has a rather practical orientation focusing on the general management of clinic/hospital equipment and providing aid to the medical staff in the use of advanced technologies for diagnosis and therapy purposes. The Romanian physiological community has been closely involved in the growth of BME that has now come of age in this country. Radu Vrâncianu's great intuition in opening the door to this science and its practical application in an institution created by Daniel Danielopolu definitely represented a good chance for Romanian public health. Recently, both clinical engineering and medical bioengineering have been introduced into the Romanian Classification of Occupations.

Delivery of chemotherapeutics using spheres made of bioengineered spider silks derived from MaSp1 and MaSp2 proteins.

PubMed

Jastrzebska, Katarzyna; Florczak, Anna; Kucharczyk, Kamil; Lin, Yinnan; Wang, Qin; Mackiewicz, Andrzej; Kaplan, David L; Dams-Kozlowska, Hanna

2018-02-01

Analysis of the properties and chemotherapeutics delivery potential of spheres made of bioengineered spider silks MS1 and MS2. MS1 and MS2 derived from Nephila clavipes dragline silks - MaSp1 and MaSp2, respectively - formed spheres that were compared in terms of physicochemical properties, cytotoxicity and loading/release of chemotherapeutics. MS2 spheres were more dispersed, smaller, of solid core, of higher beta-sheet structure content, and of opposite (negative) charge than MS1 spheres. Preloaded MS2 showed greater applicability for mitoxantrone, while postloaded for etoposide delivery compared with MS1 spheres. However, MS1 spheres were a better choice for doxorubicin delivery than MS2. Bioengineered silks can be tailored to develop a system with optimal drug loading and release properties.

Human Skin Constructs with Spatially Controlled Vasculature Using Primary and iPSC-Derived Endothelial Cells.

PubMed

Abaci, Hasan E; Guo, Zongyou; Coffman, Abigail; Gillette, Brian; Lee, Wen-Han; Sia, Samuel K; Christiano, Angela M

2016-07-01

Vascularization of engineered human skin constructs is crucial for recapitulation of systemic drug delivery and for their long-term survival, functionality, and viable engraftment. In this study, the latest microfabrication techniques are used and a novel bioengineering approach is established to micropattern spatially controlled and perfusable vascular networks in 3D human skin equivalents using both primary and induced pluripotent stem cell (iPSC)-derived endothelial cells. Using 3D printing technology makes it possible to control the geometry of the micropatterned vascular networks. It is verified that vascularized human skin equivalents (vHSEs) can form a robust epidermis and establish an endothelial barrier function, which allows for the recapitulation of both topical and systemic delivery of drugs. In addition, the therapeutic potential of vHSEs for cutaneous wounds on immunodeficient mice is examined and it is demonstrated that vHSEs can both promote and guide neovascularization during wound healing. Overall, this innovative bioengineering approach can enable in vitro evaluation of topical and systemic drug delivery as well as improve the potential of engineered skin constructs to be used as a potential therapeutic option for the treatment of cutaneous wounds. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Recent Advances in Developing Insect Natural Products as Potential Modern Day Medicines

PubMed Central

Ratcliffe, Norman; Azambuja, Patricia; Mello, Cicero Brasileiro

2014-01-01

Except for honey as food, and silk for clothing and pollination of plants, people give little thought to the benefits of insects in their lives. This overview briefly describes significant recent advances in developing insect natural products as potential new medicinal drugs. This is an exciting and rapidly expanding new field since insects are hugely variable and have utilised an enormous range of natural products to survive environmental perturbations for 100s of millions of years. There is thus a treasure chest of untapped resources waiting to be discovered. Insects products, such as silk and honey, have already been utilised for thousands of years, and extracts of insects have been produced for use in Folk Medicine around the world, but only with the development of modern molecular and biochemical techniques has it become feasible to manipulate and bioengineer insect natural products into modern medicines. Utilising knowledge gleaned from Insect Folk Medicines, this review describes modern research into bioengineering honey and venom from bees, silk, cantharidin, antimicrobial peptides, and maggot secretions and anticoagulants from blood-sucking insects into medicines. Problems and solutions encountered in these endeavours are described and indicate that the future is bright for new insect derived pharmaceuticals treatments and medicines. PMID:24883072

Noninvasive in situ evaluation of osteogenic differentiation by time-resolved laser-induced fluorescence spectroscopy.

PubMed

Ashjian, Peter; Elbarbary, Amir; Zuk, Patricia; DeUgarte, Daniel A; Benhaim, Prosper; Marcu, Laura; Hedrick, Marc H

2004-01-01

The clinical implantation of bioengineered tissues requires an in situ nondestructive evaluation of the quality of tissue constructs developed in vitro before transplantation. Time-resolved laser-induced fluorescence spectroscopy (TR-LIFS) is demonstrated here to noninvasively monitor the formation of osteogenic extracellular matrix (ECM) produced by putative stem cells (PLA cells) derived from human adipose tissue. We show that this optical spectroscopy technique can assess the relative expression of collagens (types I, III, IV, and V) within newly forming osteogenic ECM. The results are consistent with those obtained by conventional histochemical techniques (immunofluorescence and Western blot) and demonstrate that TR-LIFS is a potential tool for monitoring the expression of distinct collagen types and the formation of collagen cross-links in intact tissue constructs.

It's not what you put on, but what you take off: techniques for debriding and off-loading the diabetic foot wound.

PubMed

Armstrong, David G; Lavery, Lawrence A; Nixon, Brent P; Boulton, Andrew J M

2004-08-01

The basic etiology of neuropathic diabetic foot wounds involves pressure in conjunction with cycles of repetitive stress, leading to failure of skin and soft tissue. The central tenet of any treatment plan addressing neuropathic diabetic foot wounds is the appropriate debridement of nonviable tissue coupled with adequate pressure relief (off-loading). Although numerous advances have been made in the treatment of diabetic foot wounds, including bioengineered tissues, autologous and exogenous cytokine delivery systems, and potentially effective topical antimicrobial modalities, none will succeed without addressing effective debridement and off-loading. Specific debridement and off-loading techniques are discussed, along with available supporting evidence. This includes the use of the "instant" total contact cast, among other modalities.

Whole-body impedance--what does it measure?

PubMed

Foster, K R; Lukaski, H C

1996-09-01

Although the bioelectrical impedance technique is widely used in human nutrition and clinical research, an integrated summary of the biophysical and bioelectrical bases of this approach is lacking. We summarize the pertinent electrical phenomena relevant to the application of the impedance technique in vivo and discuss the relations between electrical measurements and biological conductor volumes. Key terms in the derivation of bioelectrical impedance analysis are described and the relation between the electrical properties of tissues and tissue structure is discussed. The relation between the impedance of an object and its geometry, scale, and intrinsic electrical properties is also discussed. Correlations between whole-body impedance measurements and various bioconductor volumes, such as total body water and fat-free mass, are experimentally well established; however, the reason for the success of the impedence technique is much less clear. The bioengineering basis for the technique is critically presented and considerations are proposed that might help to clarify the method and potentially improve its sensitivity.

Sustaining the success of medical device innovation.

PubMed

Fearis, Paul J; Craft, Brandon

2016-11-01

Paul Fearis is CEO of Clinvue, Brandon Craft is COO of Clinvue. Clinvue is medical device innovation consultancy specializing in Insight Informed Innovation in the medical industry. Paul and Brandon are also lecturers in innovation for the 'Center for Bioengineering, Innovation & Design' Masters course in Bioengineering Innovation & Design at the Johns Hopkins University, and guest lecturers at Rice University and Virginia Tech. Copyright © 2016 Elsevier Inc. All rights reserved.

Engineering Corynebacterium crenatum to produce higher alcohols for biofuel using hydrolysates of duckweed (Landoltia punctata) as feedstock.

PubMed

Su, Haifeng; Jiang, Juan; Lu, Qiuli; Zhao, Zhao; Xie, Tian; Zhao, Hai; Wang, Maolin

2015-02-07

Early trials have demonstrated great potential for the use of duckweed (family Lemnaceae) as the next generation of energy plants for the production of biofuels. Achieving this technological advance demands research to develop novel bioengineering microorganisms that can ferment duckweed feedstock to produce higher alcohols. In this study, we used relevant genes to transfer five metabolic pathways of isoleucine, leucine and valine from the yeast Saccharomyces cerevisiae into the bioengineered microorganism Corynebacterium crenatum. Experimental results showed that the bioengineered strain was able to produce 1026.61 mg/L of 2-methyl-1-butanol by fermenting glucose, compared to 981.79 mg/L from the acid hydrolysates of duckweed. The highest isobutanol yields achieved were 1264.63 mg/L from glucose and 1154.83 mg/L from duckweed, and the corresponding highest yields of 3-methyl-1-butanol were 748.35 and 684.79 mg/L. Our findings demonstrate the feasibility of using bioengineered C. crenatum as a platform to construct a bacterial strain that is capable of producing higher alcohols. We have also shown the promise of using duckweed as the basis for developing higher alcohols, illustrating that this group of plants represents an ideal fermentation substrate that can be considered the next generation of alternative energy feedstocks.

Soil solution extraction techniques for microbial ecotoxicity testing: a comparative evaluation.

PubMed

Tiensing, T; Preston, S; Strachan, N; Paton, G I

2001-02-01

The suitability of two different techniques (centrifugation and Rhizon sampler) for obtaining the interstitial pore water of soil (soil solution), integral to the ecotoxicity assessment of metal contaminated soil, were investigated by combining chemical analyses and a luminescence-based microbial biosensor. Two different techniques, centrifugation and Rhizon sampler, were used to extract the soil solution from Insch (a loamy sand) and Boyndie (a sandy loam) soils, which had been amended with different concentrations of Zn and Cd. The concentrations of dissolved organic carbon (DOC), major anions (F- , CI-, NO3, SO4(2-)) and major cations (K+, Mg2+, Ca2+) in the soil solutions varied depending on the extraction technique used. Overall, the concentrations of Zn and Cd were significantly higher in the soil solution extracted using the centrifugation technique compared with that extracted using the Rhizon sampler technique. Furthermore, the differences observed between the two extraction techniques depended on the type of soil from which the solution was being extracted. The luminescence-based biosensor Escherichia coli HB101 pUCD607 was shown to respond to the free metal concentrations in the soil solutions and showed that different toxicities were associated with each soil, depending on the technique used to extract the soil solution. This study highlights the need to characterise the type of extraction technique used to obtain the soil solution for ecotoxicity testing in order that a representative ecotoxicity assessment can be carried out.

Erosion Control and Recultivation Measures at a Headrace Channel of a Hydroelectric Power Plant using Different Combined Soil Bioengineering Techniques

NASA Astrophysics Data System (ADS)

Obriejetan, M.; Florineth, F.; Rauch, H. P.

2012-04-01

As a consequence of land use change resulting in an increased number of slope protection constructions and with respect to effects associated with climate change like extremes in temperatures and temperature variations or increased frequency of heavy precipitation, adaptation strategies for sustainable erosion protection systems are needed which meet ecological compatibility and economical requirements. Therefore a wide range of different technical solutions respectively geotextiles and geotextile-related products (blankets, nettings, grids etc.) are available on the market differing considerably in function, material, durability and pricing. Manufacturers usually provide product-specific information pertaining to application field, functional range or (technical) installation features whereas vegetational aspects are frequently neglected while vegetation can contribute substantially to increased near-surface erosion protection respectively slope stability. Though, the success of sustainable erosion control is directly dependent on several vegetational aspects. Adequate development of a functional vegetation layer in combination with geotextiles is closely associated to application aspects such as seeding technique, sowing date and intensity, seed-soil contact or maintenance measures as well as to qualitative aspects like seed quality, germination rates, area of origin, production method or certification. As a general guideline, erosion control within an initial phase is directly related to restoration techniques whereas vegetation specifics with regard to species richness or species composition play a key role in medium to long-term development and slope protection. In this context one of the fundamental objectives of our study is the identification and subsequently the determination of the main interaction processes between technical and biological components of combined slope protection systems. The influence of different geotextile characteristics on specific vegetation properties are studied by setting up comparative test plots at a field study site located at a headrace channel of a hydroelectric power plant. Different vegetational parameters such as basal coverage, species richness, species composition, abundance/dominance values by using a refined Braun-Blanquet cover estimation scale were collected as well as local environmental properties. Results during the first vegetation period show distinct effects of geotextiles especially on overall vegetation coverage and grasses-herbs-ratio. Geotextile supported plots show 20% higher overall coverage but lower amount of herbs after three months of vegetation growth compared to control plots without installation of auxiliary materials. Furthermore coir blankets reveal higher penetration resistance for seed leaves of herbal plants compared to coir nettings. Hence technical erosion protection products, biological components and it's combination have to be closely coordinated in order to achieve specified revegetation objectives and meet long-term functionality.

Method for determining gene knockouts

DOEpatents

Maranas, Costas D [Port Matilda, PA; Burgard, Anthony R [State College, PA; Pharkya, Priti [State College, PA

2011-09-27

A method for determining candidates for gene deletions and additions using a model of a metabolic network associated with an organism, the model includes a plurality of metabolic reactions defining metabolite relationships, the method includes selecting a bioengineering objective for the organism, selecting at least one cellular objective, forming an optimization problem that couples the at least one cellular objective with the bioengineering objective, and solving the optimization problem to yield at least one candidate.

Method for determining gene knockouts

DOEpatents

Maranas, Costa D; Burgard, Anthony R; Pharkya, Priti

2013-06-04

A method for determining candidates for gene deletions and additions using a model of a metabolic network associated with an organism, the model includes a plurality of metabolic reactions defining metabolite relationships, the method includes selecting a bioengineering objective for the organism, selecting at least one cellular objective, forming an optimization problem that couples the at least one cellular objective with the bioengineering objective, and solving the optimization problem to yield at least one candidate.

The body electric 2.0: recent advances in developmental bioelectricity for regenerative and synthetic bioengineering.

PubMed

Mathews, Juanita; Levin, Michael

2018-04-20

Breakthroughs in biomedicine and synthetic bioengineering require predictive, rational control over anatomical structure and function. Recent successes in manipulating cellular and molecular hardware have not been matched by progress in understanding the patterning software implemented during embryogenesis and regeneration. A fundamental capability gap is driving desired changes in growth and form to address birth defects and traumatic injury. Here we review new tools, results, and conceptual advances in an exciting emerging field: endogenous non-neural bioelectric signaling, which enables cellular collectives to make global decisions and implement large-scale pattern homeostasis. Spatially distributed electric circuits regulate gene expression, organ morphogenesis, and body-wide axial patterning. Developmental bioelectricity facilitates the interface to organ-level modular control points that direct patterning in vivo. Cracking the bioelectric code will enable transformative progress in bioengineering and regenerative medicine. Copyright © 2018 Elsevier Ltd. All rights reserved.

Exploiting Self-organization in Bioengineered Systems: A Computational Approach.

PubMed

Davis, Delin; Doloman, Anna; Podgorski, Gregory J; Vargis, Elizabeth; Flann, Nicholas S

2017-01-01

The productivity of bioengineered cell factories is limited by inefficiencies in nutrient delivery and waste and product removal. Current solution approaches explore changes in the physical configurations of the bioreactors. This work investigates the possibilities of exploiting self-organizing vascular networks to support producer cells within the factory. A computational model simulates de novo vascular development of endothelial-like cells and the resultant network functioning to deliver nutrients and extract product and waste from the cell culture. Microbial factories with vascular networks are evaluated for their scalability, robustness, and productivity compared to the cell factories without a vascular network. Initial studies demonstrate that at least an order of magnitude increase in production is possible, the system can be scaled up, and the self-organization of an efficient vascular network is robust. The work suggests that bioengineered multicellularity may offer efficiency improvements difficult to achieve with physical engineering approaches.

Scientific Programs and Funding Opportunities at the National Institute of Biomedical Imaging and Bioengineering

NASA Astrophysics Data System (ADS)

Baird, Richard

2006-03-01

The mission of the National Institute of Biomedical Imaging and Bioengineering (NIBIB) is to improve human health by promoting the development and translation of emerging technologies in biomedical imaging and bioengineering. To this end, NIBIB supports a coordinated agenda of research programs in advanced imaging technologies and engineering methods that enable fundamental biomedical discoveries across a broad spectrum of biological processes, disorders, and diseases and have significant potential for direct medical application. These research programs dramatically advance the Nation's healthcare by improving the detection, management and, ultimately, the prevention of disease. The research promoted and supported by NIBIB also is strongly synergistic with other NIH Institutes and Centers as well as across government agencies. This presentation will provide an overview of the scientific programs and funding opportunities supported by NIBIB, highlighting those that are of particular important to the field of medical physics.

Moisturizing effect of cosmetic formulations containing Aloe vera extract in different concentrations assessed by skin bioengineering techniques.

PubMed

Dal'Belo, Susi Elaine; Gaspar, Lorena Rigo; Maia Campos, Patrícia Maria Berardo Gonçalves

2006-11-01

The polysaccharide-rich composition of Aloe vera extracts (Aloe barbadensis Miller), often used in cosmetic formulations, may impart moisturizing properties to the product. The aim of this study was to evaluate the effect of cosmetic formulations containing different concentrations of freeze-dried Aloe vera extract on skin hydration, after a single and a 1- and 2-week period of application, by using skin bioengineering techniques. Stable formulations containing 5% (w/w) of a trilaureth-4 phosphate-based blend were supplemented with 0.10%, 0.25% or 0.50% (w/w) of freeze-dried Aloe vera extract and applied to the volar forearm of 20 female subjects. Skin conditions in terms of the water content of the stratum corneum and of transepidermal water loss (TEWL) (Corneometer CM 825 and Tewameter TM 210) were analysed before and after a single and 1- and 2-week period of daily application. After a single application, only formulations supplemented with 0.25% and 0.50% (w/w) of Aloe vera extract increased the water content of the stratum corneum, while after the 2-week period application, all formulations containing the extract (0.10%, 0.25% and 0.50%) had the same effect, in both cases as compared with the vehicle. TEWL was not modified after a single and after 1- and 2-week period of application, when compared with the vehicle. Our results show that freeze-dried Aloe vera extract is a natural effective ingredient for improving skin hydration, possibly through a humectant mechanism. Consequently, it may be used in moisturizing cosmetic formulations and also as a complement in the treatment of dry skin.

Mycorrhizal inoculation as a tool for sustainable bio-engineering measures in steep alpine environments? - Results of a three year field experiment

NASA Astrophysics Data System (ADS)

Bast, Alexander; Wilcke, Wolfgang; Lüscher, Peter; Graf, Frank; Gärtner, Holger

2013-04-01

Global warming is anticipated to result in an increase of heavy precipitation events. In vegetation-free, steep Alpine areas intense rain fall events have distinct influences on erosional processes on slopes. These processes and (shallow) mass movements are directly linked with torrential rain falls, and for this lead to high erosion rates in those regions, resulting in an increased natural and socio-economic damage potential. For restoring and managing erosion-prone sites, bioengineering measures as a tool for hazard prevention gain more importance. Due to the rough environmental conditions, and hence, reduced germination capability and sprout vigour, it is difficult to establish a dense cover of pioneer vegetation. Thus, the question is what can be done to give planted saplings within bioengineering projects maximum support, to develop their above- and belowground structures to promote slope stabilization. Green-house and laboratory experiments have shown that mycorrhizal inoculum has a positive impact on plant development and soil structure, e.g. the formation of (stable) aggregates within several months. Based on these promising results, we intended to apply mycorrhizal inoculation in a field-experiment. In May 2010, we established experimental plots at an erosion-prone talus slope (inclination: ~40 - 45 °; elevation 1220 - 1360 m a.s.l.), located in the Eastern Swiss Alps. The slope, consisting of moraine and denudation-derived substrate, shows high geomorphic activity (e.g. debris flows, rill erosion). Two slope areas, 10m wide and 32m long, were stabilized with 1200 plants each. Additionally, mycorrhiza inoculum (INOQ Forst, 40 ml/plant) was added to one of the two areas. Within the stabilized areas, a mixture of eight saplings was planted per running meter in 15 rows. The assortment included four saplings of green alder and two of purple willow, as well as one tree (maple, birch, ash) and shrub species (e.g. guelder rose, honeysuckle). Finally, both areas were hand-seeded with an Alpine seed-mixture. In addition, a third was selected but not treated, reflecting the natural conditions and serving as a control. Next to analysing aboveground whole-plant traits (e.g. plant height, crown diameter, stem thickness) and leaf traits (e.g. specific leaf area, leaf size, leaf dry matter content, nitrogen and potassium analyses), we also focused on belowground properties. Undisturbed soil cores (0-20cm in depth) allow a determination of a aggregate stability coefficient, the aggregate-size development, as well as root traits (e.g. root length density, fine(root)diameter). Linear mixed-effect models and testing a posteriori contrasts permit a comparison between the different treatments. Preliminary results indicate, that four months after stabilization plant mortality was high over the two treatments, but it was significantly less on the inoculated treatment. In general plant and leaf traits are showing, that plant vitality is higher at the mycorrhizal-treated plots. Examination of belowground properties yield surprising results; the non-inoculated treatment is showing higher aggregate stability coefficients and higher root length density, which is in contrast to laboratory results. Our contribution will highlight the results of the entire three year field experiment.

Traditional engineering in the biological century: the biotraditional engineer.

PubMed

Friedman, M H

2001-12-01

The increasing importance of life science in all engineering is prompting departments in the traditional engineering disciplines to offer life science as part of their curricula. Students who take advantage of this opportunity--"biotraditional engineers"--will be well positioned for careers in their discipline and in related areas of bioengineering. The founder engineering societies, such as the Bioengineering Division of ASME, are responding to this trend by broadening their scope and working increasingly across interdisciplinary borders.

How to teach artificial organs.

PubMed

Zapanta, Conrad M; Borovetz, Harvey S; Lysaght, Michael J; Manning, Keefe B

2011-01-01

Artificial organs education is often an overlooked field for many bioengineering and biomedical engineering students. The purpose of this article is to describe three different approaches to teaching artificial organs. This article can serve as a reference for those who wish to offer a similar course at their own institutions or incorporate these ideas into existing courses. Artificial organ classes typically fulfill several ABET (Accreditation Board for Engineering and Technology) criteria, including those specific to bioengineering and biomedical engineering programs.

Bioengineered Hydrogel to Inhibit Post-Traumatic Central Nervous System Scarring

DTIC Science & Technology

2016-10-01

AWARD NUMBER: W81XWH-14-1-0586 TITLE: Bioengineered Hydrogel to Inhibit Post-Traumatic Central Nervous System Scarring PRINCIPAL...Hydrogel to Inhibit Post-Traumatic Central Nervous System Scarring 5a. CONTRACT NUMBER W81XWH-14-1-0586 5b. GRANT NUMBER W81XWH- 14-1-0586 5c...barriers that prevent the optimal delivery of biologics and cells to the injured nervous system . A significant problem is the formation of scar tissue

Colonization of bone matrices by cellular components

NASA Astrophysics Data System (ADS)

Shchelkunova, E. I.; Voropaeva, A. A.; Korel, A. V.; Mayer, D. A.; Podorognaya, V. T.; Kirilova, I. A.

2017-09-01

Practical surgery, traumatology, orthopedics, and oncology require bioengineered constructs suitable for replacement of large-area bone defects. Only rigid/elastic matrix containing recipient's bone cells capable of mitosis, differentiation, and synthesizing extracellular matrix that supports cell viability can comply with these requirements. Therefore, the development of the techniques to produce structural and functional substitutes, whose three-dimensional structure corresponds to the recipient's damaged tissues, is the main objective of tissue engineering. This is achieved by developing tissue-engineering constructs represented by cells placed on the matrices. Low effectiveness of carrier matrix colonization with cells and their uneven distribution is one of the major problems in cell culture on various matrixes. In vitro studies of the interactions between cells and material, as well as the development of new techniques for scaffold colonization by cellular components are required to solve this problem.

Managing bioengineering complexity with AI techniques.

PubMed

Beal, Jacob; Adler, Aaron; Yaman, Fusun

2016-10-01

Our capabilities for systematic design and engineering of biological systems are rapidly increasing. Effectively engineering such systems, however, requires the synthesis of a rapidly expanding and changing complex body of knowledge, protocols, and methodologies. Many of the problems in managing this complexity, however, appear susceptible to being addressed by artificial intelligence (AI) techniques, i.e., methods enabling computers to represent, acquire, and employ knowledge. Such methods can be employed to automate physical and informational "routine" work and thus better allow humans to focus their attention on the deeper scientific and engineering issues. This paper examines the potential impact of AI on the engineering of biological organisms through the lens of a typical organism engineering workflow. We identify a number of key opportunities for significant impact, as well as challenges that must be overcome. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Novel optical methodologies in studying mechanical signal transduction in mammalian cells

NASA Technical Reports Server (NTRS)

Stamatas, G. N.; McIntire, L. V.

1999-01-01

For the last 3 decades evidence has been accumulating that some types of mammalian cells respond to their mechanically active environment by altering their morphology, growth rate, and metabolism. The study of such responses is very important in understanding, physiological and pathological conditions ranging from bone formation to atherosclerosis. Obtaining this knowledge has been the goal for an active research area in bioengineering termed cell mechanotransduction. The advancement of optical methodologies used in cell biology research has given the tools to elucidate cellular mechanisms that would otherwise be impossible to visualize. Combined with molecular biology techniques, they give engineers invaluable tools in understanding the chemical pathways involved in mechanotransduction. Herein we briefly review the current knowledge on mechanical signal transduction in mammalian cells, focusing on the application of novel optical techniques in the ongoing research.

Evaluation of remediation techniques in soils affected by residual contamination with heavy metals and arsenic.

PubMed

García-Carmona, M; Romero-Freire, A; Sierra Aragón, M; Martínez Garzón, F J; Martín Peinado, F J

2017-04-15

Residual soil pollution from the Aznalcóllar mine spill is still a problem in some parts of the affected area, today converted in the Guadiamar Green Corridor. Dispersed spots of polluted soils, identified by the absence of vegetation, are characterized by soil acid pH and high concentrations of As, Pb, Cu and Zn. Ex situ remediation techniques were performed with unrecovered soil samples. Landfarming, Composting and Biopiles techniques were tested in order to immobilize pollutants, to improve soil properties and to promote vegetation recovery. The effectiveness of these techniques was assessed by toxicity bioassays: Lactuca sativa L. root elongation test, Vibrio fischeri bioluminescence reduction test, soil induced respiration test, and Eisenia andrei survival and metal bioaccumulation tests. Landfarming and Composting were not effective techniques, mainly due to the poor improvement of soil properties which maintained high soluble concentrations of Zn and Cu after treatments. Biopile technique, using adjacent recovered soils in the area, was the most effective action in the reduction of soil toxicity; the improvement of soil properties and the reduction in pollutants solubility were key to improve the response of the tested organisms. Therefore, the mixture of recovered soils with polluted soils in the areas affected by residual contamination is considered a more suitable technique to reduce the residual pollution and to promote the complete soil recovery in the Guadiamar Green Corridor. Copyright © 2016 Elsevier Ltd. All rights reserved.

Characterizing RNA Dynamics at Atomic Resolution Using Solution-state NMR Spectroscopy

PubMed Central

Bothe, Jameson R.; Nikolova, Evgenia N.; Eichhorn, Catherine D.; Chugh, Jeetender; Hansen, Alexandar L.; Al-Hashimi, Hashim M.

2012-01-01

Many recently discovered non-coding RNAs do not fold into a single native conformation, but rather, sample many different conformations along their free energy landscape to carry out their biological function. Unprecedented insights into the RNA dynamic structure landscape are provided by solution-state NMR techniques that measure the structural, kinetic, and thermodynamic characteristics of motions spanning picosecond to second timescales at atomic resolution. From these studies a basic description of the RNA dynamic structure landscape is emerging, bringing new insights into how RNA structures change to carry out their function as well as applications in RNA-targeted drug discovery and RNA bioengineering. PMID:22036746

On the road to bioartificial organs.

PubMed

Ren, X; Ott, H C

2014-10-01

Biological organs are highly orchestrated systems with well-coordinated positioning, grouping, and interaction of different cell types within their specialized extracellular environment. Bioartificial organs are intended to be functional replacements of native organs generated through bioengineering techniques and hold the potential to alleviate donor organ shortage for transplantation. The development, production, and evaluation of such bioartificial organs require synergistic efforts of biology, material science, engineering, and medicine. In this review, we highlight the emerging platforms enabling structured assembly of multiple cell types into functional grafts and discuss recent advances and challenges in the development of bioartificial organs, including cell sources, in vitro organ culture, in vivo evaluation, and clinical considerations.

Future Economics of Liver Transplantation: A 20-Year Cost Modeling Forecast and the Prospect of Bioengineering Autologous Liver Grafts

PubMed Central

Habka, Dany; Mann, David; Landes, Ronald; Soto-Gutierrez, Alejandro

2015-01-01

During the past 20 years liver transplantation has become the definitive treatment for most severe types of liver failure and hepatocellular carcinoma, in both children and adults. In the U.S., roughly 16,000 individuals are on the liver transplant waiting list. Only 38% of them will receive a transplant due to the organ shortage. This paper explores another option: bioengineering an autologous liver graft. We developed a 20-year model projecting future demand for liver transplants, along with costs based on current technology. We compared these cost projections against projected costs to bioengineer autologous liver grafts. The model was divided into: 1) the epidemiology model forecasting the number of wait-listed patients, operated patients and postoperative patients; and 2) the treatment model forecasting costs (pre-transplant-related costs; transplant (admission)-related costs; and 10-year post-transplant-related costs) during the simulation period. The patient population was categorized using the Model for End-Stage Liver Disease score. The number of patients on the waiting list was projected to increase 23% over 20 years while the weighted average treatment costs in the pre-liver transplantation phase were forecast to increase 83% in Year 20. Projected demand for livers will increase 10% in 10 years and 23% in 20 years. Total costs of liver transplantation are forecast to increase 33% in 10 years and 81% in 20 years. By comparison, the projected cost to bioengineer autologous liver grafts is $9.7M based on current catalog prices for iPS-derived liver cells. The model projects a persistent increase in need and cost of donor livers over the next 20 years that’s constrained by a limited supply of donor livers. The number of patients who die while on the waiting list will reflect this ever-growing disparity. Currently, bioengineering autologous liver grafts is cost prohibitive. However, costs will decline rapidly with the introduction of new manufacturing strategies and economies of scale. PMID:26177505

Test of bioengineering structures in large eroded marly gullies (1 to 3 ha) in a mountainous and Mediterranean climate: resistance of the structures and survival of willow cuttings (Southern Alps, France)

NASA Astrophysics Data System (ADS)

Rey, Freddy; Labonne, Sophie; Dangla, Laure; Lavandier, Géraud

2014-05-01

In the Southern French Alps under a mountainous and Mediterranean climate, bioengineering structures installed in gully bottoms of highly weathered marly catchments aim at trapping a part of the eroded materials in order to reduce suspended sediment in the water system. They are made of brush layers and brush mats of cuttings on deadwood microdams. Purple and white Willows (Salix purpurea and S. incana) are used as they proved their efficiency to survive in such environment and efficiently trap marly sediment, but only in gullies with surface area less than 1 ha. Extrapolating their use to larger gullies could allow increasing the impact of such operations for reduction of sediment yield at the scale of large catchments. To this view, bioengineering structures have been built in spring and autumn 2010 in large eroded marly gullies with surface areas between 1 and 3 ha, in the Roubines and Fontaugier catchments (Southern Alps, France). 165 bioengineering structures (150 in spring and 15 in autumn) were built in 10 experimental gullies. After 3 observation years for each modality (2010 to 2012, and 2011 to 2013, respectively), the results revealed that 2/3 of the structures well resisted to damages due to concentrated flows. However, they were generally filled of sediment very rapidly, thus killing a large number of cuttings, particularly in the brush mats in gullies with surface area comprised between 2 and 3 ha. Therefore it has been proved that cuttings survival is possible in gullies with surface area less than 3 ha. In the French Southern Alps, bioengineering strategies have been improved by adding gullies of 1 to 3 ha in restoration plans. For gullies with surface area superior to 2 ha, it is recommended to first install the brush layers, and 1 to 2 years later the brush mats.

Bioengineered Noncoding RNAs Selectively Change Cellular miRNome Profiles for Cancer Therapy.

PubMed

Ho, Pui Yan; Duan, Zhijian; Batra, Neelu; Jilek, Joseph L; Tu, Mei-Juan; Qiu, Jing-Xin; Hu, Zihua; Wun, Theodore; Lara, Primo N; DeVere White, Ralph W; Chen, Hong-Wu; Yu, Ai-Ming

2018-06-01

Noncoding RNAs (ncRNAs) produced in live cells may better reflect intracellular ncRNAs for research and therapy. Attempts were made to produce biologic ncRNAs, but at low yield or success rate. Here we first report a new ncRNA bioengineering technology using more stable ncRNA carrier (nCAR) containing a pre-miR-34a derivative identified by rational design and experimental validation. This approach offered a remarkable higher level expression (40%-80% of total RNAs) of recombinant ncRNAs in bacteria and gave an 80% success rate (33 of 42 ncRNAs). New FPLC and spin-column based methods were also developed for large- and small-scale purification of milligrams and micrograms of recombinant ncRNAs from half liter and milliliters of bacterial culture, respectively. We then used two bioengineered nCAR/miRNAs to demonstrate the selective release of target miRNAs into human cells, which were revealed to be Dicer dependent (miR-34a-5p) or independent (miR-124a-3p), and subsequent changes of miRNome and transcriptome profiles. miRNA enrichment analyses of altered transcriptome confirmed the specificity of nCAR/miRNAs in target gene regulation. Furthermore, nCAR assembled miR-34a-5p and miR-124-3p were active in suppressing human lung carcinoma cell proliferation through modulation of target gene expression (e.g., cMET and CDK6 for miR-34a-5p; STAT3 and ABCC4 for miR-124-3p). In addition, bioengineered miRNA molecules were effective in controlling metastatic lung xenograft progression, as demonstrated by live animal and ex vivo lung tissue bioluminescent imaging as well as histopathological examination. This novel ncRNA bioengineering platform can be easily adapted to produce various ncRNA molecules, and biologic ncRNAs hold the promise as new cancer therapeutics. Copyright © 2018 by The American Society for Pharmacology and Experimental Therapeutics.

Future Economics of Liver Transplantation: A 20-Year Cost Modeling Forecast and the Prospect of Bioengineering Autologous Liver Grafts.

PubMed

Habka, Dany; Mann, David; Landes, Ronald; Soto-Gutierrez, Alejandro

2015-01-01

During the past 20 years liver transplantation has become the definitive treatment for most severe types of liver failure and hepatocellular carcinoma, in both children and adults. In the U.S., roughly 16,000 individuals are on the liver transplant waiting list. Only 38% of them will receive a transplant due to the organ shortage. This paper explores another option: bioengineering an autologous liver graft. We developed a 20-year model projecting future demand for liver transplants, along with costs based on current technology. We compared these cost projections against projected costs to bioengineer autologous liver grafts. The model was divided into: 1) the epidemiology model forecasting the number of wait-listed patients, operated patients and postoperative patients; and 2) the treatment model forecasting costs (pre-transplant-related costs; transplant (admission)-related costs; and 10-year post-transplant-related costs) during the simulation period. The patient population was categorized using the Model for End-Stage Liver Disease score. The number of patients on the waiting list was projected to increase 23% over 20 years while the weighted average treatment costs in the pre-liver transplantation phase were forecast to increase 83% in Year 20. Projected demand for livers will increase 10% in 10 years and 23% in 20 years. Total costs of liver transplantation are forecast to increase 33% in 10 years and 81% in 20 years. By comparison, the projected cost to bioengineer autologous liver grafts is $9.7M based on current catalog prices for iPS-derived liver cells. The model projects a persistent increase in need and cost of donor livers over the next 20 years that's constrained by a limited supply of donor livers. The number of patients who die while on the waiting list will reflect this ever-growing disparity. Currently, bioengineering autologous liver grafts is cost prohibitive. However, costs will decline rapidly with the introduction of new manufacturing strategies and economies of scale.

Minimalistic models of the vertical distribution of roots under stochastic hydrological forcing

NASA Astrophysics Data System (ADS)

Laio, Francesco

2014-05-01

The assessment of the vertical root profile can be useful for multiple purposes: the partition of water fluxes between evaporation and transpiration, the evaluation of root soil reinforcement for bioengineering applications, the influence of roots on biogeochemical and microbial processes in the soil, etc. In water-controlled ecosystems the shape of the root profile is mainly determined by the soil moisture availability at different depths. The long term soil water balance in the root zone can be assessed by modeling the stochastic incoming and outgoing water fluxes, influenced by the stochastic rainfall pulses and/or by the water table fluctuations. Through an ecohydrological analysis one obtains that in water-controlled ecosystems the vertical root distribution is a decreasing function with depth, whose parameters depend on pedologic and climatic factors. The model can be extended to suitably account for the influence of the water table fluctuations, when the water table is shallow enough to exert an influence on root development, in which case the vertical root distribution tends to assume a non-monotonic form. In order to evaluate the validity of the ecohydrological estimation of the root profile we have tested it on a case study in the north of Tuscany (Italy). We have analyzed data from 17 landslide-prone sites: in each of these sites we have assessed the pedologic and climatic descriptors necessary to apply the model, and we have measured the mean rooting depth. The results show a quite good matching between observed and modeled mean root depths. The merit of this minimalistic approach to the modeling of the vertical root distribution relies on the fact that it allows a quantitative estimation of the main features of the vertical root distribution without resorting to time- and money-demanding measuring surveys.

Fundamentals and Bioengineering of Enzymatic Fuel Cells. Part 1. Bioengineering of Enzymes as Electrocatalysts

DTIC Science & Technology

2012-01-31

assembles to form a thermostable. 3-dimensionaI supramolecular hydrogel that has aldo-keto reductase ( AKR ) activity. This is again accomplished... AKR activity, AdhD from Pyrococcus furiosus2*. The monomers are able to self-assemble into a bioactive enzymatic hydrogel that is stable to...temperatures in excess of 60 °C. AdhD is a member of the AKR superfamily that catalyzes the oxidation of secondary alcohols under basic conditions (optimum pH

Phage-protease-peptide: a novel trifecta enabling multiplex detection of viable bacterial pathogens.

PubMed

Alcaine, S D; Tilton, L; Serrano, M A C; Wang, M; Vachet, R W; Nugen, S R

2015-10-01

Bacteriophages represent rapid, readily targeted, and easily produced molecular probes for the detection of bacterial pathogens. Molecular biology techniques have allowed researchers to make significant advances in the bioengineering of bacteriophage to further improve speed and sensitivity of detection. Despite their host specificity, bacteriophages have not been meaningfully leveraged in multiplex detection of bacterial pathogens. We propose a proof-of-principal phage-based scheme to enable multiplex detection. Our scheme involves bioengineering bacteriophage to carry a gene for a specific protease, which is expressed during infection of the target cell. Upon lysis, the protease is released to cleave a reporter peptide, and the signal detected. Here we demonstrate the successful (i) modification of T7 bacteriophage to carry tobacco etch virus (TEV) protease; (ii) expression of TEV protease by Escherichia coli following infection by our modified T7, an average of 2000 units of protease per phage are produced during infection; and (iii) proof-of-principle detection of E. coli in 3 h after a primary enrichment via TEV protease activity using a fluorescent peptide and using a designed target peptide for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis (MALDI-TOF MS) analysis. This proof-of-principle can be translated to other phage-protease-peptide combinations to enable multiplex bacterial detection and readily adopted on multiple platforms, like MALDI-TOF MS or fluorescent readers, commonly found in labs.

Comparison of DGT with traditional extraction methods for assessing arsenic bioavailability to Brassica chinensis in different soils.

PubMed

Dai, Yunchao; Nasir, Mubasher; Zhang, Yulin; Gao, Jiakai; Lv, Yamin; Lv, Jialong

2018-01-01

Several predictive models and methods have been used for heavy metals bioavailability, but there is no universally accepted approach in evaluating the bioavailability of arsenic (As) in soil. The technique of diffusive gradients in thin-films (DGT) is a promising tool, but there is a considerable debate with respect to its suitability. The DGT method was compared with other traditional chemical extractions techniques (soil solution, NaHCO 3 , NH 4 Cl, HCl, and total As method) for estimating As bioavailability in soil based on a greenhouse experiment using Brassica chinensis grown in various soils from 15 provinces in China. In addition, we assessed whether these methods are independent of soil properties. The correlations between plant and soil As concentration measured with traditional extraction techniques were pH and iron oxide (Fe ox ) dependent, indicating that these methods are influenced by soil properties. In contrast, DGT measurements were independent of soil properties and also showed a better correlation coefficient than other traditional techniques. Thus, DGT technique is superior to traditional techniques and should be preferable for evaluating As bioavailability in different type of soils. Copyright © 2017 Elsevier Ltd. All rights reserved.

The History of Electromagnetic Induction Techniques in Soil Survey

NASA Astrophysics Data System (ADS)

Brevik, Eric C.; Doolittle, Jim

2014-05-01

Electromagnetic induction (EMI) has been used to characterize the spatial variability of soil properties since the late 1970s. Initially used to assess soil salinity, the use of EMI in soil studies has expanded to include: mapping soil types; characterizing soil water content and flow patterns; assessing variations in soil texture, compaction, organic matter content, and pH; and determining the depth to subsurface horizons, stratigraphic layers or bedrock, among other uses. In all cases the soil property being investigated must influence soil apparent electrical conductivity (ECa) either directly or indirectly for EMI techniques to be effective. An increasing number and diversity of EMI sensors have been developed in response to users' needs and the availability of allied technologies, which have greatly improved the functionality of these tools. EMI investigations provide several benefits for soil studies. The large amount of georeferenced data that can be rapidly and inexpensively collected with EMI provides more complete characterization of the spatial variations in soil properties than traditional sampling techniques. In addition, compared to traditional soil survey methods, EMI can more effectively characterize diffuse soil boundaries and identify included areas of dissimilar soils within mapped soil units, giving soil scientists greater confidence when collecting spatial soil information. EMI techniques do have limitations; results are site-specific and can vary depending on the complex interactions among multiple and variable soil properties. Despite this, EMI techniques are increasingly being used to investigate the spatial variability of soil properties at field and landscape scales.

Skin bioengineering: preclinical and clinical applications.

PubMed

Martínez-Santamaría, L; Guerrero-Aspizua, S; Del Río, M

2012-01-01

Regenerative Medicine is an emerging field that combines basic research and clinical observations in order to identify the elements required to replace damaged tissues and organs in vivo and to stimulate the body's intrinsic regenerative capacity. Great benefits are expected in this field as researchers take advantage of the potential regenerative properties of both embryonic and adult stem cells, and more recently, of induced pluripotent stem cells. Bioengineered skin emerged mainly in response to a critical need for early permanent coverage of extensive burns. Later this technology was also applied to the treatment of chronic ulcers. Our group has established a humanized mouse model of skin grafting that involves the use of bioengineered human skin in immunodeficient mice. This model is suitable for the study of physiologic and pathologic cutaneous processes and the evaluation of treatment strategies for skin diseases, including protocols for gene and cell therapy and tissue engineering. Copyright © 2011 Elsevier España, S.L. and AEDV. All rights reserved.

Profile of prospective bioengineering students at National University of San Juan

NASA Astrophysics Data System (ADS)

Lopez, N.; Puzzella, A.; Zabala, A.; Demartini, H.; Alborch, A.; Cabrera, L.

2007-11-01

The low percentage of students (43 % of applicants) that passed the entrance exams for the bioengineering career at the National University of San Juan in 2007, plus the historical situation of desertion in first year (about 50%), motivated the application of a diagnostic test to prospective students of this career. The aim of this test was to obtain information about the competences acquired by students to solve problems in different contexts using basic mathematical tools, reading comprehension skills to understand texts, graphs and tables. Although this test was sat by the entire population of applicants of the current school year, only the results belonging to bioengineering students are the ones presented for the purpose of this work. However, students of other disciplines of the school of engineering also have similar problems. From the analysis of the answers to the different items, it can be observed that there are serious difficulties in the development of basic capacities to successfully take the courses of this career.

Post hoc assessment of the immunogenicity of bioengineered factor VIIa demonstrates the use of preclinical tools.

PubMed

Lamberth, Kasper; Reedtz-Runge, Stine Louise; Simon, Jonathan; Klementyeva, Ksenia; Pandey, Gouri Shankar; Padkjær, Søren Berg; Pascal, Véronique; León, Ileana R; Gudme, Charlotte Nini; Buus, Søren; Sauna, Zuben E

2017-01-11

Immunogenicity is an important consideration in the licensure of a therapeutic protein because the development of neutralizing anti-drug antibodies (ADAs) can affect both safety and efficacy. Neoantigens introduced by bioengineering of a protein drug are a particular cause for concern. The development of a bioengineered recombinant factor VIIa (rFVIIa) analog was discontinued after phase 3 trials because of the development of ADAs. The unmodified parent molecule (rFVIIa), on the other hand, has been successfully used as a drug for more than two decades with no reports of immunogenicity in congenital hemophilia patients with inhibitors. We used computational and experimental methods to demonstrate that the observed ADAs could have been elicited by neoepitopes in the engineered protein. The human leukocyte antigen type of the patients who developed ADAs is consistent with this hypothesis of a neoepitope-driven immune response, a finding that might have implications for the preclinical screening of therapeutic protein analogs. Copyright © 2017, American Association for the Advancement of Science.

Bioengineering Solutions for Manufacturing Challenges in CAR T Cells

PubMed Central

Piscopo, Nicole J.; Mueller, Katherine P.; Das, Amritava; Hematti, Peiman; Murphy, William L.; Palecek, Sean P.; Capitini, Christian M.

2017-01-01

The next generation of therapeutic products to be approved for the clinic is anticipated to be cell therapies, termed “living drugs” for their capacity to dynamically and temporally respond to changes during their production ex vivo and after their administration in vivo. Genetically engineered chimeric antigen receptor (CAR) T cells have rapidly developed into powerful tools to harness the power of immune system manipulation against cancer. Regulatory agencies are beginning to approve CAR T cell therapies due to their striking efficacy in treating some hematological malignancies. However, the engineering and manufacturing of such cells remains a challenge for widespread adoption of this technology. Bioengineering approaches including biomaterials, synthetic biology, metabolic engineering, process control and automation, and in vitro disease modeling could offer promising methods to overcome some of these challenges. Here, we describe the manufacturing process of CAR T cells, highlighting potential roles for bioengineers to partner with biologists and clinicians to advance the manufacture of these complex cellular products under rigorous regulatory and quality control. PMID:28840981

Remediation techniques for heavy metal-contaminated soils: Principles and applicability.

PubMed

Liu, Lianwen; Li, Wei; Song, Weiping; Guo, Mingxin

2018-08-15

Globally there are over 20millionha of land contaminated by the heavy metal(loid)s As, Cd, Cr, Hg, Pb, Co, Cu, Ni, Zn, and Se, with the present soil concentrations higher than the geo-baseline or regulatory levels. In-situ and ex-situ remediation techniques have been developed to rectify the heavy metal-contaminated sites, including surface capping, encapsulation, landfilling, soil flushing, soil washing, electrokinetic extraction, stabilization, solidification, vitrification, phytoremediation, and bioremediation. These remediation techniques employ containment, extraction/removal, and immobilization mechanisms to reduce the contamination effects through physical, chemical, biological, electrical, and thermal remedy processes. These techniques demonstrate specific advantages, disadvantages, and applicability. In general, in-situ soil remediation is more cost-effective than ex-situ treatment, and contaminant removal/extraction is more favorable than immobilization and containment. Among the available soil remediation techniques, electrokinetic extraction, chemical stabilization, and phytoremediation are at the development stage, while the others have been practiced at full, field scales. Comprehensive assessment indicates that chemical stabilization serves as a temporary soil remediation technique, phytoremediation needs improvement in efficiency, surface capping and landfilling are applicable to small, serious-contamination sites, while solidification and vitrification are the last remediation option. The cost and duration of soil remediation are technique-dependent and site-specific, up to $500ton -1 soil (or $1500m -3 soil or $100m -2 land) and 15years. Treatability studies are crucial to selecting feasible techniques for a soil remediation project, with considerations of the type and degree of contamination, remediation goals, site characteristics, cost effectiveness, implementation time, and public acceptability. Copyright © 2018 Elsevier B.V. All rights reserved.

Inhibition of microRNA-29 enhances elastin levels in cells haploinsufficient for elastin and in bioengineered vessels--brief report.

PubMed

Zhang, Pei; Huang, Angela; Ferruzzi, Jacopo; Mecham, Robert P; Starcher, Barry C; Tellides, George; Humphrey, Jay D; Giordano, Frank J; Niklason, Laura E; Sessa, William C

2012-03-01

The goal of this study was to determine whether antagonizing microRNA (miR)-29 enhances elastin (ELN) levels in cells and tissues lacking ELN. miR-29 mimics reduced ELN levels in fibroblasts and smooth muscle cells, whereas miR-29 inhibition increased ELN levels. Antagonism of miR-29 also increased ELN levels in cells from patients haploinsufficient for ELN and in bioengineered human vessels. miR-29 antagonism may promote increased ELN levels during conditions of ELN deficiencies.

The Role of Endothelial Cells in Myofiber Differentiation and the Vascularization and Innervation of Bioengineered Muscle Tissue in vivo

DTIC Science & Technology

2012-10-08

differentiation of co- cultured cells in vivo and in vitro. We first utilized a co- culture of fluorescently labeled endothelial cells (ECs) and muscle...of 10T1/2 cells as pericytes (PCs) to the culture of MPCs and ECs can result in the stabilization of bioengineered vessels [10]. In the current study...Burlingame, CA). 2.2. Cell culture 2.2.1. MPC, EC, PC isolation and culture Green fluorescent protein (GFP)-labeled muscle progenitor cells (GFPþ MPCs

National Institute of Biomedical Imaging and Bioengineering Point-of-Care Technology Research Network: Advancing Precision Medicine

PubMed Central

Ford Carleton, Penny; Parrish, John A.; Collins, John M.; Crocker, J. Benjamin; Dixon, Ronald F.; Edgman-Levitan, Susan; Lewandrowski, Kent B.; Stahl, James E.; Klapperich, Catherine; Cabodi, Mario; Gaydos, Charlotte A.; Rompalo, Anne M.; Manabe, Yukari; Wang, Tza-Huei; Rothman, Richard; Geddes, Chris D.; Widdice, Lea; Jackman, Joany; Mathura, Rishi A.; Lash, Tiffani Bailey

2016-01-01

To advance the development of point-of-care technology (POCT), the National Institute of Biomedical Imaging and Bioengineering established the POCT Research Network (POCTRN), comprised of Centers that emphasize multidisciplinary partnerships and close facilitation to move technologies from an early stage of development into clinical testing and patient use. This paper describes the POCTRN and the three currently funded Centers as examples of academic-based organizations that support collaborations across disciplines, institutions, and geographic regions to successfully drive innovative solutions from concept to patient care. PMID:27730014

Grand challenges in bioengineered nanorobotics for cancer therapy.

PubMed

Lenaghan, Scott C; Wang, Yongzhong; Xi, Ning; Fukuda, Toshio; Tarn, Tzyhjong; Hamel, William R; Zhang, Mingjun

2013-03-01

One of the grand challenges currently facing engineering, life sciences, and medicine is the development of fully functional nanorobots capable of sensing, decision making, and actuation. These nanorobots may aid in cancer therapy, site-specific drug delivery, circulating diagnostics, advanced surgery, and tissue repair. In this paper, we will discuss, from a bioinspired perspective, the challenges currently facing nanorobotics, including core design, propulsion and power generation, sensing, actuation, control, decision making, and system integration. Using strategies inspired from microorganisms, we will discuss a potential bioengineered nanorobot for cancer therapy.

The Use of Electromagnetic Induction Techniques for Soil Mapping

NASA Astrophysics Data System (ADS)

Brevik, Eric C.; Doolittle, Jim

2015-04-01

Soils have high natural spatial variability. This has been recognized for a long time, and many methods of mapping that spatial variability have been investigated. One technique that has received considerable attention over the last ~30 years is electromagnetic induction (EMI). Particularly when coupled with modern GPS and GIS systems, EMI techniques have allowed the rapid and relatively inexpensive collection of large spatially-related data sets that can be correlated to soil properties that either directly or indirectly influence electrical conductance in the soil. Soil electrical conductivity is directly controlled by soil water content, soluble salt content, clay content and mineralogy, and temperature. A wide range of indirect controls have been identified, such as soil organic matter content and bulk density; both influence water relationships in the soil. EMI techniques work best in areas where there are large changes in one soil property that influences soil electrical conductance, and don't work as well when soil properties that influence electrical conductance are largely homogenous. This presentation will present examples of situations where EMI techniques were successful as well as a couple of examples of situations where EMI was not so useful in mapping the spatial variability of soil properties. Reasons for both the successes and failures will be discussed.

Soil Sampling Techniques For Alabama Grain Fields

NASA Technical Reports Server (NTRS)

Thompson, A. N.; Shaw, J. N.; Mask, P. L.; Touchton, J. T.; Rickman, D.

2003-01-01

Characterizing the spatial variability of nutrients facilitates precision soil sampling. Questions exist regarding the best technique for directed soil sampling based on a priori knowledge of soil and crop patterns. The objective of this study was to evaluate zone delineation techniques for Alabama grain fields to determine which method best minimized the soil test variability. Site one (25.8 ha) and site three (20.0 ha) were located in the Tennessee Valley region, and site two (24.2 ha) was located in the Coastal Plain region of Alabama. Tennessee Valley soils ranged from well drained Rhodic and Typic Paleudults to somewhat poorly drained Aquic Paleudults and Fluventic Dystrudepts. Coastal Plain s o i l s ranged from coarse-loamy Rhodic Kandiudults to loamy Arenic Kandiudults. Soils were sampled by grid soil sampling methods (grid sizes of 0.40 ha and 1 ha) consisting of: 1) twenty composited cores collected randomly throughout each grid (grid-cell sampling) and, 2) six composited cores collected randomly from a -3x3 m area at the center of each grid (grid-point sampling). Zones were established from 1) an Order 1 Soil Survey, 2) corn (Zea mays L.) yield maps, and 3) airborne remote sensing images. All soil properties were moderately to strongly spatially dependent as per semivariogram analyses. Differences in grid-point and grid-cell soil test values suggested grid-point sampling does not accurately represent grid values. Zones created by soil survey, yield data, and remote sensing images displayed lower coefficient of variations (8CV) for soil test values than overall field values, suggesting these techniques group soil test variability. However, few differences were observed between the three zone delineation techniques. Results suggest directed sampling using zone delineation techniques outlined in this paper would result in more efficient soil sampling for these Alabama grain fields.

Critical Evaluation of Soil Pore Water Extraction Methods on a Natural Soil

NASA Astrophysics Data System (ADS)

Orlowski, Natalie; Pratt, Dyan; Breuer, Lutz; McDonnell, Jeffrey

2017-04-01

Soil pore water extraction is an important component in ecohydrological studies for the measurement of δ2H and δ18O. The effect of pore water extraction technique on resultant isotopic signature is poorly understood. Here we present results of an intercomparison of commonly applied lab-based soil water extraction techniques on a natural soil: high pressure mechanical squeezing, centrifugation, direct vapor equilibration, microwave extraction, and two types of cryogenic extraction systems. We applied these extraction methods to a natural summer-dry (gravimetric water contents ranging from 8% to 15%) glacio-lacustrine, moderately fine textured clayey soil; excavated in 10 cm sampling increments to a depth of 1 meter. Isotope results were analyzed via OA-ICOS and compared for each extraction technique that produced liquid water. From our previous intercomparison study among the same extraction techniques but with standard soils, we discovered that extraction methods are not comparable. We therefore tested the null hypothesis that all extraction techniques would be able to replicate the natural evaporation front in a comparable manner occurring in a summer-dry soil. Our results showed that the extraction technique utilized had a significant effect on the soil water isotopic composition. High pressure mechanical squeezing and vapor equilibration techniques produced similar results with similarly sloped evaporation lines. Due to the nature of soil properties and dryness, centrifugation was unsuccessful in obtaining pore water for isotopic analysis. Cryogenic extraction on both tested techniques produced similar results to each other on a similar sloping evaporation line, but dissimilar with depth.

Micropatterned nanostructures: a bioengineered approach to mass-produce functional myocardial grafts.

PubMed

Serpooshan, Vahid; Mahmoudi, Morteza

2015-02-13

Cell-based therapies are a recently established path for treating a wide range of human disease. Tissue engineering of contractile heart muscle for replacement therapy is among the most exciting and important of these efforts. However, current in vitro techniques of cultivating functional mature cardiac grafts have only been moderately successful due to the poor capability of traditional two-dimensional cell culture systems to recapitulate necessary in vivo conditions. In this issue, Kiefer et al introduce a laser-patterned nanostructured substrate (Al/Al2O3 nanowires) for efficient maintenance of oriented human cardiomyocytes, with great potential to open new roads to mass-production of contractile myocardial grafts for cardiovascular tissue engineering.

Micropatterned nanostructures: a bioengineered approach to mass-produce functional myocardial grafts

NASA Astrophysics Data System (ADS)

Serpooshan, Vahid; Mahmoudi, Morteza

2015-02-01

Cell-based therapies are a recently established path for treating a wide range of human disease. Tissue engineering of contractile heart muscle for replacement therapy is among the most exciting and important of these efforts. However, current in vitro techniques of cultivating functional mature cardiac grafts have only been moderately successful due to the poor capability of traditional two-dimensional cell culture systems to recapitulate necessary in vivo conditions. In this issue, Kiefer et al [1] introduce a laser-patterned nanostructured substrate (Al/Al2O3 nanowires) for efficient maintenance of oriented human cardiomyocytes, with great potential to open new roads to mass-production of contractile myocardial grafts for cardiovascular tissue engineering.

In Vitro Differentiation and Propagation of Urothelium from Pluripotent Stem Cell Lines.

PubMed

Osborn, Stephanie L; Kurzrock, Eric A

2018-01-01

Bioengineering of bladder tissue, particularly for those patients who have advanced bladder disease, requires a source of urothelium that is healthy, capable of significant proliferation in vitro and immunologically tolerated upon transplant. As pluripotent stem cells have the potential to fulfill such criteria, they provide a critical cell source from which urothelium might be derived in vitro and used clinically. Herein, we describe the in vitro differentiation of urothelium from the H9 human embryonic stem cell (hESC) line through the definitive endoderm (DE) phase via selective culture techniques. The protocol can be used to derive urothelium from other hESCs or human-induced pluripotent stem cells.

Automating Microbial Directed Evolution For Bioengineering Applications

NASA Astrophysics Data System (ADS)

Lee, A.; Demachkie, I. S.; Sardesh, N.; Arismendi, D.; Ouandji, C.; Wang, J.; Blaich, J.; Gentry, D.

2016-12-01

From a micro-biology perspective, directed evolution is a technique that uses controlled environmental pressures to select for a desired phenotype. Directed evolution has the distinct advantage over rational design of not needing extensive knowledge of the genome or pathways associated with a microorganism to induce phenotypes. However, there are currently limitations to the applicability of this technique including being time-consuming, error-prone, and dependent on existing assays that may lack selectivity for the given phenotype. The AADEC (Autonomous Adaptive Directed Evolution Chamber) system is a proof-of-concept instrument to automate and improve the technique such that directed evolution can be used more effectively as a general bioengineering tool. A series of tests using the automated system and comparable by-hand survival assay measurements have been carried out using UV-C radiation and Escherichia coli cultures in order to demonstrate the advantages of the AADEC versus traditional implementations of directed evolution such as random mutagenesis. AADEC uses UV-C exposure as both a source of environmental stress and mutagenesis, so in order to evaluate the UV-C tolerance obtained from the cultures, a manual UV-C exposure survival assay was developed alongside the device to compare the survival fractions at a fixed dosage. This survival assay involves exposing E.coli to UV-C radiation using a custom-designed exposure hood to control the flux and dose. Surviving cells are counted then transferred to the next iteration and so on for several iterations to calculate the survival fractions for each exposure iteration. This survival assay primarily serves as a baseline for the AADEC device, allowing quantification of the differences between the AADEC system over the manual approach. The primary data of comparison is survival fractions; this is obtained by optical density and plate counts in the manual assay and by optical density growth curve fits pre- and post-exposure in the automated case. This data can then be compiled to calculate trends over the iterations to characterize increasing UV-C resistance of the E.coli strains. The observed trends are statistically indistinguishable through several iterations from both sources.

Use of Ultrasonic Technology for Soil Moisture Measurement

NASA Technical Reports Server (NTRS)

Choi, J.; Metzl, R.; Aggarwal, M. D.; Belisle, W.; Coleman, T.

1997-01-01

In an effort to improve existing soil moisture measurement techniques or find new techniques using physics principles, a new technique is presented in this paper using ultrasonic techniques. It has been found that ultrasonic velocity changes as the moisture content changes. Preliminary values of velocities are 676.1 m/s in dry soil and 356.8 m/s in 100% moist soils. Intermediate values can be calibrated to give exact values for the moisture content in an unknown sample.

Revascularization of decellularized lung scaffolds: principles and progress

PubMed Central

Stabler, Collin T.; Lecht, Shimon; Mondrinos, Mark J.; Goulart, Ernesto; Lazarovici, Philip

2015-01-01

There is a clear unmet clinical need for novel biotechnology-based therapeutic approaches to lung repair and/or replacement, such as tissue engineering of whole bioengineered lungs. Recent studies have demonstrated the feasibility of decellularizing the whole organ by removal of all its cellular components, thus leaving behind the extracellular matrix as a complex three-dimensional (3D) biomimetic scaffold. Implantation of decellularized lung scaffolds (DLS), which were recellularized with patient-specific lung (progenitor) cells, is deemed the ultimate alternative to lung transplantation. Preclinical studies demonstrated that, upon implantation in rodent models, bioengineered lungs that were recellularized with airway and vascular cells were capable of gas exchange for up to 14 days. However, the long-term applicability of this concept is thwarted in part by the failure of current approaches to reconstruct a physiologically functional, quiescent endothelium lining the entire vascular tree of reseeded lung scaffolds, as inferred from the occurrence of hemorrhage into the airway compartment and thrombosis in the vasculature in vivo. In this review, we explore the idea that successful whole lung bioengineering will critically depend on 1) preserving and/or reestablishing the integrity of the subendothelial basement membrane, especially of the ultrathin respiratory membrane separating airways and capillaries, during and following decellularization and 2) restoring vascular physiological functionality including the barrier function and quiescence of the endothelial lining following reseeding of the vascular compartment. We posit that physiological reconstitution of the pulmonary vascular tree in its entirety will significantly promote the clinical translation of the next generation of bioengineered whole lungs. PMID:26408553

Coming to terms with tissue engineering and regenerative medicine in the lung

PubMed Central

Tschumperlin, Daniel J.; Stenmark, Kurt R.

2015-01-01

Lung diseases such as emphysema, interstitial fibrosis, and pulmonary vascular diseases cause significant morbidity and mortality, but despite substantial mechanistic understanding, clinical management options for them are limited, with lung transplantation being implemented at end stages. However, limited donor lung availability, graft rejection, and long-term problems after transplantation are major hurdles to lung transplantation being a panacea. Bioengineering the lung is an exciting and emerging solution that has the ultimate aim of generating lung tissues and organs for transplantation. In this article we capture and review the current state of the art in lung bioengineering, from the multimodal approaches, to creating anatomically appropriate lung scaffolds that can be recellularized to eventually yield functioning, transplant-ready lungs. Strategies for decellularizing mammalian lungs to create scaffolds with native extracellular matrix components vs. de novo generation of scaffolds using biocompatible materials are discussed. Strengths vs. limitations of recellularization using different cell types of various pluripotency such as embryonic, mesenchymal, and induced pluripotent stem cells are highlighted. Current hurdles to guide future research toward achieving the clinical goal of transplantation of a bioengineered lung are discussed. PMID:26254424

One device, one equation: the simplest way to objectively evaluate psoriasis severity.

PubMed

Choi, Jae Woo; Kim, Bo Ri; Choi, Chong Won; Youn, Sang Woong

2015-02-01

The erythema, scale and thickness of psoriasis lesions could be converted to bioengineering parameters. An objective psoriasis severity assessment is advantageous in terms of accuracy and reproducibility over conventional severity assessment. We aimed to formulate an objective psoriasis severity index with a single bioengineering device that can possibly substitute the conventional subjective Psoriasis Severity Index. A linear regression analysis was performed to derive the formula with the subjective Psoriasis Severity Index as the dependent variable and various bioengineering parameters determined from 157 psoriasis lesions as independent variables. The construct validity of the objective Psoriasis Severity Index was evaluated with an additional 30 psoriasis lesions through a Pearson correlation analysis. The formula is composed of hue and brightness, which are sufficiently obtainable with a Colorimeter alone. A very strong positive correlation was found between the objective and subjective psoriasis severity indexes. The objective Psoriasis Severity Index is a novel, practical and valid assessment method that can substitute the conventional one. Combined with subjective area assessment, it could further replace the Psoriasis Area and Severity Index which is currently most popular. © 2014 Japanese Dermatological Association.

Bioengineering natural product biosynthetic pathways for therapeutic applications.

PubMed

Wu, Ming-Cheng; Law, Brian; Wilkinson, Barrie; Micklefield, Jason

2012-12-01

With the advent of next-generation DNA sequencing technologies, the number of microbial genome sequences has increased dramatically, revealing a vast array of new biosynthetic gene clusters. Genomics data provide a tremendous opportunity to discover new natural products, and also to guide the bioengineering of new and existing natural product scaffolds for therapeutic applications. Notably, it is apparent that the vast majority of biosynthetic gene clusters are either silent or produce very low quantities of the corresponding natural products. It is imperative therefore to devise methods for activating unproductive biosynthetic pathways to provide the quantities of natural products needed for further development. Moreover, on the basis of our expanding mechanistic and structural knowledge of biosynthetic assembly-line enzymes, new strategies for re-programming biosynthetic pathways have emerged, resulting in focused libraries of modified products with potentially improved biological properties. In this review we will focus on the latest bioengineering approaches that have been utilised to optimise yields and increase the structural diversity of natural product scaffolds for future clinical applications. Copyright © 2012 Elsevier Ltd. All rights reserved.

Reprogramming cells and tissue patterning via bioelectrical pathways: molecular mechanisms and biomedical opportunities

PubMed Central

Levin, Michael

2013-01-01

Transformative impact in regenerative medicine requires more than the reprogramming of individual cells: advances in repair strategies for birth defects or injuries, tumor normalization, and the construction of bioengineered organs and tissues all require the ability to control large-scale anatomical shape. Much recent work has focused on the transcriptional and biochemical regulation of cell behaviour and morphogenesis. However, exciting new data reveal that bioelectrical properties of cells and their microenvironment exert a profound influence on cell differentiation, proliferation, and migration. Ion channels and pumps expressed in all cells, not just excitable nerve and muscle, establish resting potentials that vary across tissues and change with significant developmental events. Most importantly, the spatio-temporal gradients of these endogenous transmembrane voltage potentials (Vmem) serve as instructive patterning cues for large-scale anatomy, providing organ identity, positional information, and prepattern template cues for morphogenesis. New genetic and pharmacological techniques for molecular modulation of bioelectric gradients in vivo have revealed the ability to initiate complex organogenesis, change tissue identity, and trigger regeneration of whole vertebrate appendages. A large segment of the spatial information processing that orchestrates individual cells’ programs towards the anatomical needs of the host organism is electrical; this blurs the line between memory and decision-making in neural networks and morphogenesis in non-neural tissues. Advances in cracking this bioelectric code will enable the rational reprogramming of shape in whole tissues and organs, revolutionizing regenerative medicine, developmental biology, and synthetic bioengineering. PMID:23897652

Reprogramming cells and tissue patterning via bioelectrical pathways: molecular mechanisms and biomedical opportunities.

PubMed

Levin, Michael

2013-01-01

Transformative impact in regenerative medicine requires more than the reprogramming of individual cells: advances in repair strategies for birth defects or injuries, tumor normalization, and the construction of bioengineered organs and tissues all require the ability to control large-scale anatomical shape. Much recent work has focused on the transcriptional and biochemical regulation of cell behavior and morphogenesis. However, exciting new data reveal that bioelectrical properties of cells and their microenvironment exert a profound influence on cell differentiation, proliferation, and migration. Ion channels and pumps expressed in all cells, not just excitable nerve and muscle, establish resting potentials that vary across tissues and change with significant developmental events. Most importantly, the spatiotemporal gradients of these endogenous transmembrane voltage potentials (Vmem ) serve as instructive patterning cues for large-scale anatomy, providing organ identity, positional information, and prepattern template cues for morphogenesis. New genetic and pharmacological techniques for molecular modulation of bioelectric gradients in vivo have revealed the ability to initiate complex organogenesis, change tissue identity, and trigger regeneration of whole vertebrate appendages. A large segment of the spatial information processing that orchestrates individual cells' programs toward the anatomical needs of the host organism is electrical; this blurs the line between memory and decision-making in neural networks and morphogenesis in nonneural tissues. Advances in cracking this bioelectric code will enable the rational reprogramming of shape in whole tissues and organs, revolutionizing regenerative medicine, developmental biology, and synthetic bioengineering. Copyright © 2013 Wiley Periodicals, Inc.

A Brief History of the use of Electromagnetic Induction Techniques in Soil Survey

NASA Astrophysics Data System (ADS)

Brevik, Eric C.; Doolittle, James

2017-04-01

Electromagnetic induction (EMI) has been used to characterize the spatial variability of soil properties since the late 1970s. Initially used to assess soil salinity, the use of EMI in soil studies has expanded to include: mapping soil types; characterizing soil water content and flow patterns; assessing variations in soil texture, compaction, organic matter content, and pH; and determining the depth to subsurface horizons, stratigraphic layers or bedrock, among other uses. In all cases the soil property being investigated must influence soil apparent electrical conductivity (ECa) either directly or indirectly for EMI techniques to be effective. An increasing number and diversity of EMI sensors have been developed in response to users' needs and the availability of allied technologies, which have greatly improved the functionality of these tools and increased the amount and types of data that can be gathered with a single pass. EMI investigations provide several benefits for soil studies. The large amount of georeferenced data that can be rapidly and inexpensively collected with EMI provides more complete characterization of the spatial variations in soil properties than traditional sampling techniques. In addition, compared to traditional soil survey methods, EMI can more effectively characterize diffuse soil boundaries and identify included areas of dissimilar soils within mapped soil units, giving soil scientists greater confidence when collecting spatial soil information. EMI techniques do have limitations; results are site-specific and can vary depending on the complex interactions among multiple and variable soil properties. Despite this, EMI techniques are increasingly being used to investigate the spatial variability of soil properties at field and landscape scales. The future should witness a greater use of multiple-frequency and multiple-coil EMI sensors and integration with other sensors to assess the spatial variability of soil properties. Data analysis will be improved with advanced processing and presentation systems and more sophisticated geostatistical modeling algorithms will be developed and used to interpolate EMI data, improve the resolution of subsurface features, and assess soil properties.

The use of soil electrical conductivity to investigate soil homogeneity in Story County, Iowa, USA

USDA-ARS?s Scientific Manuscript database

Precision agriculture, environmental applications, and land use planning needs have led to calls for more detailed soil maps. A remote sensing technique that can differentiate soils with a high degree of accuracy would be ideal for soil survey purposes. One technique that has shown promise in Iowa i...

Efficiency of modified chemical remediation techniques for soil contaminated by organochlorine pesticides

NASA Astrophysics Data System (ADS)

Correa-Torres, S. N.; Kopytko, M.; Avila, S.

2016-07-01

This study reports the optimization of innovation chemical techniques in order to improve the remediation of soils contaminated with organochloride pesticides. The techniques used for remediation were dehalogenation and chemical oxidation in soil contaminated by pesticides. These techniques were applied sequentially and combined to evaluate the design optimize the concentration and contact time variables. The soil of this study was collect in cotton crop zone in Agustin Codazzi municipality, Colombia, and its physical properties was measure. The modified dehalogenation technique of EPA was applied on the contaminated soil by adding Sodium Bicarbonate solution at different concentrations and rates during 4, 7 and 14 days, subsequently oxidation technique was implemented by applying a solution of KMnO4 at different concentration and reaction times. Organochlorine were detected by Gas Chromatography analysis coupled Mass Spectrometry and its removals were between 85.4- 90.0% of compounds such as 4, 4’-DDT, 4,4’-DDD, 4,4-DDE, trans-Clordane y Endrin. These results demonstrate that the technique of dehalogenation with oxidation chemistry can be used for remediation soils contaminated by organochloride pesticides.

A Tensile Strength of Bermuda Grass and Vetiver Grass in Terms of Root Reinforcement Ability Toward Soil Slope Stabilization

NASA Astrophysics Data System (ADS)

Noorasyikin, M. N.; Zainab, M.

2016-07-01

An examination on root characteristics and root properties has been implemented in this study. Two types of bioengineering were chose which are Vetiver grass and Bermuda grass as these grasses were widely applied for slope stabilization. The root samples were taken to the laboratory to investigate its classification, characteristics and strength. The root of both grasses was found grow with fibrous root matrix system. In terms of root anchorage, the root matrix system of Vetiver grass was exhibits more strengthen than the Bermuda grass. However, observation on root image from Scanning Electron Microscope test reveals that the root of Vetiver grass becomes non-porous as the moisture content reduced. Meanwhile, the root tensile strength of Bermuda grass was obtained acquired low value with higher percentage of moisture content, root morphology and bonding strength. The results indicated that the root tensile strength is mainly influence by percentage of moisture content and root morphology.

The CSSIAR v.1.00 Software: A new tool based on SIAR to assess soil redistribution using Compound Specific Stable Isotopes

NASA Astrophysics Data System (ADS)

Sergio, de los Santos-Villalobos; Claudio, Bravo-Linares; dos Anjos Roberto, Meigikos; Renan, Cardoso; Max, Gibbs; Andrew, Swales; Lionel, Mabit; Gerd, Dercon

Soil erosion is one of the biggest challenges for food production around the world. Many techniques have been used to evaluate and mitigate soil degradation. Nowadays isotopic techniques are becoming a powerful tool to assess soil apportionment. One of the innovative techniques used is the Compound Specific Stable Isotopes (CSSI) analysis, which has been used to track down sediments and specify their sources by the isotopic signature of δ13 C in specific fatty acids. The application of this technique on soil apportionment has been recently developed, however there is a lack of user-friendly Software for data processing and interpretation. The aim of this article is to introduce a new open source tool for working with data sets generated by the use of the CSSI technique to assess soil apportionment, called the CSSIARv1.00 Software

Sources and remediation techniques for mercury contaminated soil.

PubMed

Xu, Jingying; Bravo, Andrea Garcia; Lagerkvist, Anders; Bertilsson, Stefan; Sjöblom, Rolf; Kumpiene, Jurate

2015-01-01

Mercury (Hg) in soils has increased by a factor of 3 to 10 in recent times mainly due to combustion of fossil fuels combined with long-range atmospheric transport processes. Other sources as chlor-alkali plants, gold mining and cement production can also be significant, at least locally. This paper summarizes the natural and anthropogenic sources that have contributed to the increase of Hg concentration in soil and reviews major remediation techniques and their applications to control soil Hg contamination. The focus is on soil washing, stabilisation/solidification, thermal treatment and biological techniques; but also the factors that influence Hg mobilisation in soil and therefore are crucial for evaluating and optimizing remediation techniques are discussed. Further research on bioremediation is encouraged and future study should focus on the implementation of different remediation techniques under field conditions. Copyright © 2014 Elsevier Ltd. All rights reserved.

Diclofenac sodium delivery to the eye: in vitro evaluation of novel solid lipid nanoparticle formulation using human cornea construct.

PubMed

Attama, Anthony A; Reichl, Stephan; Müller-Goymann, Christel C

2008-05-01

Solid lipid nanoparticles (SLNs) were prepared with a combination of homolipid from goat (goat fat) and phospholipid, and evaluated for diclofenac sodium (DNa) delivery to the eye using bio-engineered human cornea, produced from immortalized human corneal endothelial cells (HENC), stromal fibroblasts and epithelial cells CEPI 17 CL 4. Encapsulation efficiency was high and sustained release of DNa and high permeation through the bio-engineered cornea were achieved. Results obtained in this work showed that permeation of DNa through the cornea construct was improved by formulation as SLN modified with phospholipid.

A pilot study of an anti-MRSA bio-engineered lacteal complex (anti-MRSA BLC) in a murine septicemia model.

PubMed

Stoff, Jesse A; Nix, David E; DeYoung, D W

2006-01-01

Methicillin-resistant Staphylococcus aureus (MRSA) is an important pathogen of humans and other animals, causing septicemia, abcessation, toxemia, and other infectious diseases. Refined bioengineered lacteal complex (BLC), made specifically against MRSA, is a novel complex of low molecular weight immunogenic and antimicrobial molecules. It was evaluated in vivo using a mouse model of MRSA-induced peritonitis. Intraperitoneal dosing of anti-MRSA BLC demonstrated a therapeutic effect (83% survival) against an intraperitoneal MRSA challenge that caused 100% mortality in untreated animals. Anti-MRSA BLC is a promising therapeutic modality for MRSA infection.

Should bioengineering graduates seek employment in the defense industry?

PubMed

Johnson, Arthur T

2014-01-01

They say that the difference between a mechanical engineer and a civil engineer is that the mechanical engineer develops weapons whereas a civil engineer designs targets. The implication is that some engineers are involved with building peaceful infrastructure whereas others contribute to destruction. This brings to mind the question: what is the proper role for engineers in the creation of weapons and defenses against them? In particular, should engineers specializing in biology or medicine be involved in the defense industry? After all, bioengineers are supposed to be builders or healers rather than warriors or destroyers.

Branding the bio/biomedical engineering degree.

PubMed

Voigt, Herbert F

2011-01-01

The future challenges to medical and biological engineering, sometimes referred to as biomedical engineering or simply bioengineering, are many. Some of these are identifiable now and others will emerge from time to time as new technologies are introduced and harnessed. There is a fundamental issue regarding "Branding the bio/biomedical engineering degree" that requires a common understanding of what is meant by a B.S. degree in Biomedical Engineering, Bioengineering, or Biological Engineering. In this paper we address some of the issues involved in branding the Bio/Biomedical Engineering degree, with the aim of clarifying the Bio/Biomedical Engineering brand.

Soil Microbial Forensics.

PubMed

Santiago-Rodriguez, Tasha M; Cano, Raúl J

2016-08-01

Soil microbial forensics can be defined as the study of how microorganisms can be applied to forensic investigations. The field of soil microbial forensics is of increasing interest and applies techniques commonly used in diverse disciplines in order to identify microbes and determine their abundances, complexities, and interactions with soil and surrounding objects. Emerging new techniques are also providing insights into the complexity of microbes in soil. Soil may harbor unique microbes that may reflect specific physical and chemical characteristics indicating site specificity. While applications of some of these techniques in the field of soil microbial forensics are still in early stages, we are still gaining insight into how microorganisms may be more robustly used in forensic investigations.

GPU surface extraction using the closest point embedding

NASA Astrophysics Data System (ADS)

Kim, Mark; Hansen, Charles

2015-01-01

Isosurface extraction is a fundamental technique used for both surface reconstruction and mesh generation. One method to extract well-formed isosurfaces is a particle system; unfortunately, particle systems can be slow. In this paper, we introduce an enhanced parallel particle system that uses the closest point embedding as the surface representation to speedup the particle system for isosurface extraction. The closest point embedding is used in the Closest Point Method (CPM), a technique that uses a standard three dimensional numerical PDE solver on two dimensional embedded surfaces. To fully take advantage of the closest point embedding, it is coupled with a Barnes-Hut tree code on the GPU. This new technique produces well-formed, conformal unstructured triangular and tetrahedral meshes from labeled multi-material volume datasets. Further, this new parallel implementation of the particle system is faster than any known methods for conformal multi-material mesh extraction. The resulting speed-ups gained in this implementation can reduce the time from labeled data to mesh from hours to minutes and benefits users, such as bioengineers, who employ triangular and tetrahedral meshes

Probing the interaction between nanoparticles and lipid membranes by quartz crystal microbalance with dissipation monitoring

NASA Astrophysics Data System (ADS)

Yousefi, Nariman; Tufenkji, Nathalie

2016-12-01

There is increasing interest in using quartz crystal microbalance with dissipation monitoring (QCM-D) to investigate the interaction of nanoparticles (NPs) with model surfaces. The high sensitivity, ease of use and the ability to monitor interactions in real-time has made it a popular technique for colloid chemists, biologists, bioengineers and biophysicists. QCM-D has been recently used to probe the interaction of NPs with supported lipid bilayers (SLBs) as model cell membranes. The interaction of NPs with SLBs is highly influenced by the quality of the lipid bilayers. Unlike many surface sensitive techniques, using QCM-D, the quality of SLBs can be assessed in real-time, hence QCM-D studies on SLB-NP interactions are less prone to the artefacts arising from bilayers that are not well formed. The ease of use and commercial availability of a wide range of sensor surfaces also have made QCM-D a versatile tool for studying NP interactions with lipid bilayers. In this review, we summarize the state-of-the-art on QCM-D based techniques for probing the interactions of NPs with lipid bilayers.

Objective Assessment of Sunburn and Minimal Erythema Doses: Comparison of Noninvasive In Vivo Measuring Techniques after UVB Irradiation

NASA Astrophysics Data System (ADS)

Huang, Min-Wei; Lo, Pei-Yu; Cheng, Kuo-Sheng

2010-12-01

Military personnel movement is exposed to solar radiation and sunburn is a major problem which can cause lost workdays and lead to disciplinary action. This study was designed to identify correlation parameters in evaluating in vivo doses and epidermis changes following sunburn inflammation. Several noninvasive bioengineering techniques have made objective evaluations possible. The volar forearms of healthy volunteers ([InlineEquation not available: see fulltext.]), 2 areas, 20 mm in diameter, were irradiated with UVB 100 mj/[InlineEquation not available: see fulltext.] and 200 mj/[InlineEquation not available: see fulltext.], respectively. The skin changes were recorded by several monitored techniques before and 24 hours after UV exposures. Our results showed that chromameter [InlineEquation not available: see fulltext.] value provides more reliable information and can be adopted with mathematical model in predicting the minimal erythema dose (MED) which showed lower than visual assessment by 10 mj/[InlineEquation not available: see fulltext.] (Pearson correlation coefficient [InlineEquation not available: see fulltext.]). A more objective measure for evaluation of MED was established for photosensitive subjects' prediction and sunburn risks prevention.

Woody Vegetation on Levees? - Research Experiences and Design Suggestions

NASA Astrophysics Data System (ADS)

Lammeranner, Walter

2013-04-01

Recent flood events in Austria have reawakened practical and scientific interest in the stability of levees. One focus amongst others has been taken on the relationship between vegetation and levee stability with special reference to the role of woody plants. The effects of woody plants are undoubtedly manifold: On the one hand they can potentially have a negative influence and endanger levees, which is why many guidelines ban woody vegetation to preserve stability, visual inspection and unhindered flood-fight access. On the other hand woody vegetation can have several positive impacts on soil stability and which effects prevail depends largely on types and characteristics of plants. This shows how controversially woody plants on levees can be discussed and the strong need for further research in this field. In order to obtain new insights and widen horizons for this controversial issue, a research project carried out by the Institute of Soil Bioengineering and Landscape Construction - at the University of Natural Resources and Life Sciences, Vienna - was launched. This project deals with several aspects of effects of woody plants have on levees and focuses particularly on shrubby woody plants. The examined vegetation type is a dense stand of willows - Purple-Willows (Salix purpurea L.) - commonly used for stabilization of river embankments. The proposed contribution discusses the gained results with reference to levee stability and existing levee vegetation guidelines and gives design suggestions for compatible woody vegetation on levees.

Induction of Scleroderma Fibrosis in Skin-Humanized Mice by Administration of Anti-Platelet-Derived Growth Factor Receptor Agonistic Autoantibodies.

PubMed

Luchetti, Michele M; Moroncini, Gianluca; Jose Escamez, Maria; Svegliati Baroni, Silvia; Spadoni, Tatiana; Grieco, Antonella; Paolini, Chiara; Funaro, Ada; Avvedimento, Enrico V; Larcher, Fernando; Del Rio, Marcela; Gabrielli, Armando

2016-09-01

To describe a skin-SCID mouse chimeric model of systemic sclerosis (SSc; scleroderma) fibrosis based on engraftment of ex vivo-bioengineered skin using skin cells derived either from scleroderma patients or from healthy donors. Three-dimensional bioengineered skin containing human keratinocytes and fibroblasts isolated from skin biopsy specimens from healthy donors or SSc patients was generated ex vivo and then grafted onto the backs of SCID mice. The features of the skin grafts were analyzed by immunohistochemistry, and the functional profile of the graft fibroblasts was defined before and after treatment with IgG from healthy controls or SSc patients. Two procedures were used to investigate the involvement of platelet-derived growth factor receptor (PDGFR): 1) nilotinib, a tyrosine kinase inhibitor, was administered to mice before injection of IgG from SSc patient sera (SSc IgG) into the grafts, and 2) human anti-PDGFR monoclonal antibodies were injected into the grafts. Depending on the type of bioengineered skin grafted, the regenerated human skin exhibited either the typical scleroderma phenotype or the healthy human skin architecture. Treatment of animals carrying healthy donor skin grafts with SSc IgG resulted in the appearance of a bona fide scleroderma phenotype, as confirmed by increased collagen deposition and fibroblast activation markers. Results of the experiments involving administration of nilotinib or monoclonal antibodies confirmed the involvement of PDGFR. Our results provide the first in vivo demonstration of the fibrotic properties of anti-PDGFR agonistic antibodies. This bioengineered skin-humanized mouse model can be used to test in vivo the progression of the disease and to monitor response to antifibrotic drugs. © 2016, American College of Rheumatology.

Bioengineer effects on understory species richness, diversity, and composition change along an environmental stress gradient: Experimental and mensurative evidence

NASA Astrophysics Data System (ADS)

Watt, Cortney A.; Scrosati, Ricardo A.

2013-05-01

Canopy-forming bioengineer species are commonly assumed to increase local species richness and diversity. We tested this notion by investigating the effects of fucoid seaweed canopies on understory communities along rocky intertidal elevation gradients in Atlantic Canada. Such gradients exhibit increasing thermal extremes and variation from low to high elevations, and are broadly used in stress gradient studies. A manipulative experiment created canopy and no-canopy treatments at the low, middle, and high intertidal zones, eliminating all species (except fucoid canopies) from replicate quadrats. After recolonization, overall richness and diversity (considering all primary producers and consumers) were higher under canopies than uncovered by canopies at the high and middle zones, but no effects occurred at the low zone. Similarly, species composition was affected by canopies at the high and middle zones, but not at the low zone. A mensurative study that surveyed the full range of canopy cover (0-100%) using nearly five times more quadrats from pristine areas yielded the same results: richness and diversity increased with canopy cover at the high and middle zones (approaching stabilization toward high cover values), but no effects occurred at the low zone. Lack of canopy effects at low elevations is related to mild habitat conditions, which canopies are unable to modify, while positive effects at higher elevations relate to the capacity of canopies to ameliorate harsh conditions. This is the first time that a combined experimental and mensurative approach shows that the same bioengineer species affect overall species richness, diversity, and composition differently along a stress gradient. Overall, protecting canopy-forming bioengineers to preserve local biodiversity should be most effective in stressful environments.

The regulation of tooth morphogenesis is associated with epithelial cell proliferation and the expression of Sonic hedgehog through epithelial-mesenchymal interactions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ishida, Kentaro; Murofushi, Mayumi; Nakao, Kazuhisa

2011-02-18

Research highlights: {yields} Bioengineered teeth regulated the contact area of epithelium and mesenchyme. {yields} The crown width is regulated by the contact area of the epithelium and mesenchyme. {yields} This regulation is associated with cell proliferation and Sonic hedgehog expression. {yields} The cusp number is correlated with the crown width of the bioengineered tooth. {yields} Cell proliferation and Shh expression areas regulate the tooth morphogenesis. -- Abstract: Ectodermal organs, such as the tooth, salivary gland, hair, and mammary gland, develop through reciprocal epithelial-mesenchymal interactions. Tooth morphologies are defined by the crown width and tooth length (macro-morphologies), and by the numbermore » and locations of the cusp and roots (micro-morphologies). In our current study, we report that the crown width of a bioengineered molar tooth, which was reconstructed using dissociated epithelial and mesenchymal cells via an organ germ method, can be regulated by the contact area between epithelial and mesenchymal cell layers. We further show that this is associated with cell proliferation and Sonic hedgehog (Shh) expression in the inner enamel epithelium after the germ stage has formed a secondary enamel knot. We also demonstrate that the cusp number is significantly correlated with the crown width of the bioengineered tooth. These findings suggest that the tooth micro-morphology, i.e. the cusp formation, is regulated after the tooth width, or macro-morphology, is determined. These findings also suggest that the spatiotemporal patterning of cell proliferation and the Shh expression areas in the epithelium regulate the crown width and cusp formation of the developing tooth.« less

Review of remediation practices regarding cadmium-enriched farmland soil with particular reference to China.

PubMed

Tang, X; Li, Q; Wu, M; Lin, L; Scholz, M

2016-10-01

Cadmium-enrichment of farmland soil greatly threatens the sustainable use of soil resources and the safe cultivation of grain. This review paper briefly introduces the status of farmland soil as well as grain, which are both often polluted by cadmium (Cd) in China, and illustrates the major sources of Cd contaminants in farmland soil. In order to meet soil environmental quality standards and farmland environmental quality evaluation standards for edible agricultural products, Cd-enriched farmland soil is frequently remediated with the following prevailing techniques: dig and fill, electro-kinetic remediation, chemical elution, stabilisation and solidification, phytoremediation, field management and combined remediation. Most remediation techniques are still at the stage of small-scale trial experiments in China and few techniques are assessed in field trials. After comparing the technical and economical applicability among different Cd-enriched farmland soil remediation techniques, a novel ecological and hydraulic remediation technique has been proposed, which integrated the advantages of chemical elution, solidification and stabilisation, phytoremediation and field management. The ecological and hydraulic remediation concept is based on existing irrigation and drainage facilities, ecological ditches (ponds) and agronomic measures, which mainly detoxify the Cd-enriched soil during the interim period of crop cultivation, and guarantee the grain safety during its growth period. This technique may shift the challenge from soil to water treatment, and thus greatly enhances the remediation efficiency and shortens the remediation duration. Moreover, the proposed ecological and hydraulic remediation method matches well with the practical choice of cultivation while remediation for Cd-enriched soil in China, which has negligible impacts on the normal crop cultivation process, and thus shows great potential for large area applications. Copyright © 2016 Elsevier Ltd. All rights reserved.

Covariate selection with iterative principal component analysis for predicting physical

USDA-ARS?s Scientific Manuscript database

Local and regional soil data can be improved by coupling new digital soil mapping techniques with high resolution remote sensing products to quantify both spatial and absolute variation of soil properties. The objective of this research was to advance data-driven digital soil mapping techniques for ...

Effective Classroom Demonstration of Soil Reinforcing Techniques.

ERIC Educational Resources Information Center

Williams, John Wharton; Fox, Dennis James

1986-01-01

Presents a model for demonstrating soil mass stabilization. Explains how this approach can assist students in understanding the various types of soil reinforcement techniques, their relative contribution to increased soil strength, and some of their limitations. A working drawing of the model and directives for construction are included. (ML)

Applications of conducting polymers and their issues in biomedical engineering

PubMed Central

Ravichandran, Rajeswari; Sundarrajan, Subramanian; Venugopal, Jayarama Reddy; Mukherjee, Shayanti; Ramakrishna, Seeram

2010-01-01

Conducting polymers (CPs) have attracted much interest as suitable matrices of biomolecules and have been used to enhance the stability, speed and sensitivity of various biomedical devices. Moreover, CPs are inexpensive, easy to synthesize and versatile because their properties can be readily modulated by (i) surface functionalization techniques and (ii) the use of a wide range of molecules that can be entrapped or used as dopants. This paper discusses the various surface modifications of the CP that can be employed in order to impart physico-chemical and biological guidance cues that promote cell adhesion/proliferation at the polymer–tissue interface. This ability of the CP to induce various cellular mechanisms widens its applications in medical fields and bioengineering. PMID:20610422

Investigation of Carbohydrate Recognition via Computer Simulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Quentin R.; Lindsay, Richard J.; Petridis, Loukas

Carbohydrate recognition by proteins, such as lectins and other (bio)molecules, can be essential for many biological functions. Interest has arisen due to potential protein and drug design and future bioengineering applications. A quantitative measurement of carbohydrate-protein interaction is thus important for the full characterization of sugar recognition. Here, we focus on the aspect of utilizing computer simulations and biophysical models to evaluate the strength and specificity of carbohydrate recognition in this review. With increasing computational resources, better algorithms and refined modeling parameters, using state-of-the-art supercomputers to calculate the strength of the interaction between molecules has become increasingly mainstream. We reviewmore » the current state of this technique and its successful applications for studying protein-sugar interactions in recent years.« less

Investigation of Carbohydrate Recognition via Computer Simulation

DOE PAGES

Johnson, Quentin R.; Lindsay, Richard J.; Petridis, Loukas; ...

2015-04-28

Carbohydrate recognition by proteins, such as lectins and other (bio)molecules, can be essential for many biological functions. Interest has arisen due to potential protein and drug design and future bioengineering applications. A quantitative measurement of carbohydrate-protein interaction is thus important for the full characterization of sugar recognition. Here, we focus on the aspect of utilizing computer simulations and biophysical models to evaluate the strength and specificity of carbohydrate recognition in this review. With increasing computational resources, better algorithms and refined modeling parameters, using state-of-the-art supercomputers to calculate the strength of the interaction between molecules has become increasingly mainstream. We reviewmore » the current state of this technique and its successful applications for studying protein-sugar interactions in recent years.« less

Mathematics and the surgeon.

PubMed Central

Crank, J.

1976-01-01

The surgeon uses elementary mathematics just as much as any other educated layman. In his professional life, however, much of the knowledge and skill on which he relies has had a mathematical strand in its development, possibly woven into the supporting disciplines such as physics, chemistry, biology, and bioengineering. The valves and limitations of mathematical models are examined briefly in the general medical field and particularly in relation to the surgeon. Arithmetic and statistics are usually regarded as the most immediately useful parts of mathematics. Examples are cited, however, of medical postgraduate work which uses other highly advanced mathematical techniques. The place of mathematics in postgraduate and postexperience teaching courses is touched on. The role of a mathematical consultant in the medical team is discussed. PMID:942167

Incorporation of the HIV-1 microbicide cyanovirin-N in a food product

PubMed Central

Li, Ming; Patton, Dorothy L.; Cosgrove-Sweeney, Yvonne; Ratner, Deena; Rohan, Lisa C.; Cole, Alexander M.; Tarwater, Patrick M.; Gupta, Phalguni; Ramratnam, Bharat

2012-01-01

An urgent need exists for HIV-1 microbicides. Here, we describe the in vivo testing of lactic acid bacteria bioengineered to secrete cyanovirin-N. We fed pigtail macaques a yogurt formulation that used bioengineered strains as a starter culture. Cyanovirin-N expression could be detected in the rectal vault during and immediately after feeding. Ex vivo viral challenge of rectal tissue biopsies revealed that peak viral burden was significantly lower in tissue obtained from experimental animals compared to control animals. Formulation of candidate compounds in lactic acid bacteria and their oral administration appears to be a feasible strategy for mucosal delivery of microbicides. PMID:21926631

Bioengineered Chimeric Spider Silk-Uranium Binding Proteins

PubMed Central

Krishnaji, Sreevidhya Tarakkad; Kaplan, David L.

2014-01-01

Heavy metals constitute a source of environmental pollution. Here, novel functional hybrid biomaterials for specific interactions with heavy metals are designed by bioengineering consensus sequence repeats from spider silk of Nephila clavipes with repeats of a uranium peptide recognition motif from a mutated 33-residue of calmodulin protein from Paramecium tetraurelia. The self-assembly features of the silk to control nanoscale organic/inorganic material interfaces provides new biomaterials for uranium recovery. With subsequent enzymatic digestion of the silk to concentrate the sequestered metals, options can be envisaged to use these new chimeric protein systems in environmental engineering, including to remediate environments contaminated by uranium. PMID:23212989

Bioengineering of Artificial Lymphoid Organs.

PubMed

Nosenko, M A; Drutskaya, M S; Moisenovich, M M; Nedospasov, S A

2016-01-01

This review addresses the issue of bioengineering of artificial lymphoid organs.Progress in this field may help to better understand the nature of the structure-function relations that exist in immune organs. Artifical lymphoid organs may also be advantageous in the therapy or correction of immunodefficiencies, autoimmune diseases, and cancer. The structural organization, development, and function of lymphoid tissue are analyzed with a focus on the role of intercellular contacts and on the cytokine signaling pathways regulating these processes. We describe various polymeric materials, as scaffolds, for artificial tissue engineering. Finally, published studies in which artificial lymphoid organs were generated are reviewed and possible future directions in the field are discussed.

Bioengineering of Artificial Lymphoid Organs

PubMed Central

Nosenko, M. A.; Drutskaya, M. S.; Moisenovich, M. M.; Nedospasov, S. A.

2016-01-01

This review addresses the issue of bioengineering of artificial lymphoid organs.Progress in this field may help to better understand the nature of the structure-function relations that exist in immune organs. Artifical lymphoid organs may also be advantageous in the therapy or correction of immunodefficiencies, autoimmune diseases, and cancer. The structural organization, development, and function of lymphoid tissue are analyzed with a focus on the role of intercellular contacts and on the cytokine signaling pathways regulating these processes. We describe various polymeric materials, as scaffolds, for artificial tissue engineering. Finally, published studies in which artificial lymphoid organs were generated are reviewed and possible future directions in the field are discussed. PMID:27437136

Injectable Self-Healing Hydrogel with Antimicrobial and Antifouling Properties.

PubMed

Li, Lin; Yan, Bin; Yang, Jingqi; Huang, Weijuan; Chen, Lingyun; Zeng, Hongbo

2017-03-22

Microbial adhesion, biofilm formation and associated microbial infection are common challenges faced by implanted biomaterials (e.g., hydrogels) in bioengineering applications. In this work, an injectable self-healing hydrogel with antimicrobial and antifouling properties was prepared through self-assembly of an ABA triblock copolymer employing catechol functionalized polyethylene glycol (PEG) as A block and poly{[2-(methacryloyloxy)-ethyl] trimethylammonium iodide}(PMETA) as B block. This hydrogel exhibits excellent thermosensitivity, and can effectively inhibit the growth of E. coli (>99.8% killing efficiency) and prevent cell attachment. It can also heal autonomously from repeated damage, through mussel-inspired catechol-mediated hydrogen bonding and aromatic interactions, exhibiting great potential in bioengineering applications.

A specialized bioengineering ion beam line

NASA Astrophysics Data System (ADS)

Yu, L. D.; Sangyuenyongpipat, S.; Sriprom, C.; Thongleurm, C.; Suwanksum, R.; Tondee, N.; Prakrajang, K.; Vilaithong, T.; Brown, I. G.; Wiedemann, H.

2007-04-01

A specialized bioengineering ion beam line has recently been completed at Chiang Mai University to meet rapidly growing needs of research and application development in low-energy ion beam biotechnology. This beam line possesses special features: vertical main beam line, low-energy (30 keV) ion beams, double swerve of the beam, a fast pumped target chamber, and an in-situ atomic force microscope (AFM) system chamber. The whole beam line is situated in a bioclean environment, occupying two stories. The quality of the ion beam has been studied. It has proved that this beam line has significantly contributed to our research work on low-energy ion beam biotechnology.

Orthodontics at a Pivotal Point of Transformation

PubMed Central

Mao, Jeremy J.

2014-01-01

The profession of orthodontics is projected to face a multitude of challenges. Do cyclic forces accelerate the rate of tooth movement and hence the speed of orthodontic treatment? Would bioengineered cementum and dentine be a solution to root resorption? What would orthodontics be like when bioengineered periodontal ligament and alveolar bone become clinical practice, or one day, entire teeth are bioengineered? Would it be possible to selectively differentiate stem cells into osteoblasts or osteoclasts by either static or cyclic forces? What is the new demand on orthodontic expertise with increasingly automated appliances? What will be the impact of the next generation of dental implants or rapid prototyped crowns on orthodontics? A century ago, Edward Angle’s practice of fixed appliances, along with other seminal contributions, such as functional appliances, established the profession of orthodontics. Today, the biophysical principles of orthodontics remain largely unchanged from Angle’s era, despite incremental refinements of brackets and wires. The paucity of fundamental innovations in orthodontics for decades presents intrinsic risks for the profession. This review will identify challenges for contemporary orthodontics and delineate strategies for the profession to evolve in an era of unprecedented scientific and technological advances, and serve as a call to action for the orthodontic profession. PMID:25018618

Medical ultrasound education for bioengineers

NASA Astrophysics Data System (ADS)

Vaezy, Shahram

2005-04-01

The widespread adoption of ultrasound technologies in medicine has necessitated the development of educational programs to address the growing demand for trained expertise in both academia and industry. The demand has been especially great in the field of therapeutic ultrasound that has experienced a significant level of research and development activities in the past decade. The applications cover a wide range including cancer treatment, hemorrhage control, cardiac ablation, gene therapy, and cosmetic surgery. A comprehensive educational program in ultrasound is well suited for bioengineering departments at colleges and universities. Our educational program for students in Bioengineering at the University of Washington includes a year-long coursework covering theory and practice of ultrasound, conducting research projects, attending and presenting at weekly seminars on literature survey, presentations at scientific meetings, and attending specialized workshops offered by various institutions for specific topics. An important aspect of this training is its multi-disciplinary approach, encompassing science, engineering, and medicine. The students are required to build teams with expertise in these disciplines. Our experience shows that these students are well prepared for careers in academia, conducting cutting edge research, as well as industry, being involved in the transformation of research end-products to commercially viable technology.

Regenerative endodontics as a tissue engineering approach: past, current and future.

PubMed

Malhotra, Neeraj; Mala, Kundabala

2012-12-01

With the reported startling statistics of high incidence of tooth decay and tooth loss, the current interest is focused on the development of alternate dental tissue replacement therapies. This has led to the application of dental tissue engineering as a clinically relevant method for the regeneration of dental tissues and generation of bioengineered whole tooth. Although, tissue engineering approach requires the three main key elements of stem cells, scaffold and morphogens, a conductive environment (fourth element) is equally important for successful engineering of any tissue and/or organ. The applications of this science has evolved continuously in dentistry, beginning from the application of Ca(OH)(2) in vital pulp therapy to the development of a fully functional bioengineered tooth (mice). Thus, with advances in basic research, recent reports and studies have shown successful application of tissue engineering in the field of dentistry. However, certain practical obstacles are yet to be overcome before dental tissue regeneration can be applied as evidence-based approach in clinics. The article highlights on the past achievements, current developments and future prospects of tissue engineering and regenerative therapy in the field of endodontics and bioengineered teeth (bioteeth). © 2012 The Authors. Australian Endodontic Journal © 2012 Australian Society of Endodontology.

Resprout and survival of willows (Salix purpurea and S. incana), Poplars (Populus nigra) and Tamaris (Tamarix gallica) cuttings in marly gullies with Southern aspect in a mountainous and Mediterranean climate (Southern Alps, France)

NASA Astrophysics Data System (ADS)

Rey, Freddy; Labonne, Sophie; Dangla, Laure; Lavandier, Géraud

2014-05-01

In the Southern French Alps under a mountainous and Mediterranean climate, a current strategy of bioengineering is developed for trapping sediment in marly gullies with surface area less than 1 ha. It is based on the use of structures in the form of brush layers and brush mats of cuttings on deadwood microdams. Purple and white Willows (Salix purpurea and S. incana) are recommended here as they proved their efficiency to resprout and survive in such environment. However, these species installed in Southern gullies did not survive in previous experiments, due to the too harsh conditions of solar radiation and drought. We thus decided to test other species, namely black Poplar (Populus nigra) and Tamaris (Tamarix gallica), which proved their resistance to drought conditions in other experiments. To this view, bioengineering structures have been built in 2010 in eroded marly gullies in the Roubines and Fontaugier catchments (Southern Alps, France). We tested two installation modalities: one in spring and a second in autumn. Seventy-eight bioengineering structures (50 in spring and 28 in autumn), among which 32 made with Poplar cuttings and 28 with Tamaris cuttings, as well as 11 structures with purple Willow and 7 with white Willow as controls, were built in 6 experimental gullies. After 3 observation years for each modality (2010 to 2012, and 2011 to 2013, respectively), results first revealed that Willow species succeeded in surviving in gullies in Southern aspect (76 % for the cuttings installed in spring and 52 % for those installed in autumn), which is in contradiction with previous results. Second, Poplar showed a good ability to survive (62 % for the cuttings installed in spring and 33 % for those installed in autumn). Tamaris obtained the worst score with 26 % and 38 % of survival for the cuttings installed in spring and autumn, respectively. Globally, excepted for Tamaris, survival rates were better for the cuttings installed in spring. The bioengineering strategy has therefore been improved by incorporating cuttings of poplar species on the bioengineering structures, whatever the aspect of the gully but specifically on the Southern ones. Tamaris is not recommended as for it. Final recommendation is to preferably install cuttings in spring instead of autumn.

Using Color, Texture and Object-Based Image Analysis of Multi-Temporal Camera Data to Monitor Soil Aggregate Breakdown

PubMed Central

Ymeti, Irena; van der Werff, Harald; Shrestha, Dhruba Pikha; Jetten, Victor G.; Lievens, Caroline; van der Meer, Freek

2017-01-01

Remote sensing has shown its potential to assess soil properties and is a fast and non-destructive method for monitoring soil surface changes. In this paper, we monitor soil aggregate breakdown under natural conditions. From November 2014 to February 2015, images and weather data were collected on a daily basis from five soils susceptible to detachment (Silty Loam with various organic matter content, Loam and Sandy Loam). Three techniques that vary in image processing complexity and user interaction were tested for the ability of monitoring aggregate breakdown. Considering that the soil surface roughness causes shadow cast, the blue/red band ratio is utilized to observe the soil aggregate changes. Dealing with images with high spatial resolution, image texture entropy, which reflects the process of soil aggregate breakdown, is used. In addition, the Huang thresholding technique, which allows estimation of the image area occupied by soil aggregate, is performed. Our results show that all three techniques indicate soil aggregate breakdown over time. The shadow ratio shows a gradual change over time with no details related to weather conditions. Both the entropy and the Huang thresholding technique show variations of soil aggregate breakdown responding to weather conditions. Using data obtained with a regular camera, we found that freezing–thawing cycles are the cause of soil aggregate breakdown. PMID:28556803

Using Color, Texture and Object-Based Image Analysis of Multi-Temporal Camera Data to Monitor Soil Aggregate Breakdown.

PubMed

Ymeti, Irena; van der Werff, Harald; Shrestha, Dhruba Pikha; Jetten, Victor G; Lievens, Caroline; van der Meer, Freek

2017-05-30

Remote sensing has shown its potential to assess soil properties and is a fast and non-destructive method for monitoring soil surface changes. In this paper, we monitor soil aggregate breakdown under natural conditions. From November 2014 to February 2015, images and weather data were collected on a daily basis from five soils susceptible to detachment (Silty Loam with various organic matter content, Loam and Sandy Loam). Three techniques that vary in image processing complexity and user interaction were tested for the ability of monitoring aggregate breakdown. Considering that the soil surface roughness causes shadow cast, the blue/red band ratio is utilized to observe the soil aggregate changes. Dealing with images with high spatial resolution, image texture entropy, which reflects the process of soil aggregate breakdown, is used. In addition, the Huang thresholding technique, which allows estimation of the image area occupied by soil aggregate, is performed. Our results show that all three techniques indicate soil aggregate breakdown over time. The shadow ratio shows a gradual change over time with no details related to weather conditions. Both the entropy and the Huang thresholding technique show variations of soil aggregate breakdown responding to weather conditions. Using data obtained with a regular camera, we found that freezing-thawing cycles are the cause of soil aggregate breakdown.

Impacts of soil moisture content on visual soil evaluation

NASA Astrophysics Data System (ADS)

Emmet-Booth, Jeremy; Forristal, Dermot; Fenton, Owen; Bondi, Giulia; Creamer, Rachel; Holden, Nick

2017-04-01

Visual Soil Examination and Evaluation (VSE) techniques offer tools for soil quality assessment. They involve the visual and tactile assessment of soil properties such as aggregate size and shape, porosity, redox morphology, soil colour and smell. An increasing body of research has demonstrated the reliability and utility of VSE techniques. However a number of limitations have been identified, including the potential impact of soil moisture variation during sampling. As part of a national survey of grassland soil quality in Ireland, an evaluation of the impact of soil moisture on two widely used VSE techniques was conducted. The techniques were Visual Evaluation of Soil Structure (VESS) (Guimarães et al., 2011) and Visual Soil Assessment (VSA) (Shepherd, 2009). Both generate summarising numeric scores that indicate soil structural quality, though employ different scoring mechanisms. The former requires the assessment of properties concurrently and the latter separately. Both methods were deployed on 20 sites across Ireland representing a range of soils. Additional samples were taken for soil volumetric water (θ) determination at 5-10 and 10-20 cm depth. No significant correlation was observed between θ 5-10 cm and either VSE technique. However, VESS scores were significantly related to θ 10-20 cm (rs = 0.40, sig = 0.02) while VSA scores were not (rs = -0.33, sig = 0.06). VESS and VSA scores can be grouped into quality classifications (good, moderate and poor). No significant mean difference was observed between θ 5-10 cm or θ 10-20 cm according to quality classification by either method. It was concluded that VESS scores may be affected by soil moisture variation while VSA appear unaffected. The different scoring mechanisms, where the separate assessment and scoring of individual properties employed by VSA, may limit soil moisture effects. However, moisture content appears not to affect overall structural quality classification by either method. References Guimarães, R.M.C., Ball, B.C. & Tormena, C.A. 2011. Improvements in the visual evaluation of soil structure, Soil Use and Management, 27, 3: 395-403 Shepherd, G.T. 2009. Visual Soil Assessment. Field guide for pastoral grazing and cropping on flat to rolling country. 2nd edn. Horizons regional council, New Zealand.

Assessment and Comparison of Electrokinetic and Electrokinetic-bioremediation Techniques for Mercury Contaminated Soil

NASA Astrophysics Data System (ADS)

Azhar, A. T. S.; Nabila, A. T. A.; Nurshuhaila, M. S.; Zaidi, E.; Azim, M. A. M.; Farhana, S. M. S.

2016-11-01

Landfills are major sources of contamination due to the presence of harmful bacteria and heavy metals. Electrokinetic-Bioremediation (Ek-Bio) is one of the techniques that can be conducted to remediate contaminated soil. Therefore, the most prominent bacteria from landfill soil will be isolated to determine their optimal conditions for culture and growth. The degradation rate and the effectiveness of selected local bacteria were used to reduce soil contamination. Hence, this enhances microbiological activities to degrade contaminants in soil and reduce the content of heavy metals. The aim of this study is to investigate the ability of isolated bacteria (Lysinibacillus fusiformis) to remove mercury in landfill soil. 5 kg of landfill soil was mixed with deionized water to make it into slurry condition for the purpose of electrokinetic and bioremediation. This remediation technique was conducted for 7 days by using 50 V/m of electrical gradient and Lysinibacillus fusiformis bacteria was applied at the anode reservoir. The slurry landfill soil was located at the middle of the reservoir while distilled water was placed at the cathode of reservoir. After undergoing treatment for 7 days, the mercury analyzer showed that there was a significant reduction of approximately up to 78 % of mercury concentration for the landfill soil. From the results, it is proven that electrokinetic bioremediation technique is able to remove mercury within in a short period of time. Thus, a combination of Lysinibacillus fusiformis and electrokinetic technique has the potential to remove mercury from contaminated soil in Malaysia.

Utilization of specific and non-specific peptide interactions with inorganic nanomaterials on the surface of bacteriophage M13: Methodologies towards phage supported bi-functional materials

NASA Astrophysics Data System (ADS)

Avery, Kendra Nicole

Many types of organisms create a variety of nano and micro scale materials from precursors available in their surrounding environments by a process called biomineralization. As scientists begin to understand how these organisms utilize specific and non-specific interactions with a variety of biopolymers such as chitin, peptides, proteins and nucleic acids with these precursors to create inorganic/organic composite materials, they have begun to wonder about the synthesis of other types of non-biologically templated synthetic techniques that might be possible. Bioengineered organisms and biopolymers have begun to be used for these types of studies. A variety of selection techniques exist for discovering biopolymers with an affinity for a target material, however, one of the most notable is a technique called peptide phage display. This is a technique that utilizes a commercially available randomized peptide library attached at the tip of the filamentous bacteriophage M13. In this dissertation capabilities of bacteriophage M13 are explored in regard to the creation of bi-functional nano materials by exploiting both specific peptide interactions as well as non-specific peptide interactions on the surface of the organism. Chapter 2 focuses on utilizing the specific peptide interactions of the randomized library at pIII in order to discover peptides with high binding affinity for a variety of nanomaterials. Selection studies called biopanning are performed on a variety of nanomaterials such as CaMoO4, allotropes of Ni, Fe2O3 and Fe3O4, and Rh and Pt with the fcc type crystal structure. Similarities and differences between peptides discovered for these materials are discussed. Chapter 3 focuses on utilizing the non-specific peptide interactions on the long axis of M13 called pVIII. The pVIII region consists of 2700 copies of the same 50 amino acid protein which as a negatively charged domain which is exposed to solution. The pVIII region therefore provides the surface of the phage with a negative charge on which nanomaterials can be supported. Metal salt precursors reduced in the presence of WT M13 are studied in this chapter. Metal salt precursors of Fe, Co, Ru, Rh and Pd seem to be the most effective at coating the surface of the phage based on the positively charged metal-aquo complexes formed in water, which are attracted to the negative pVIII region. Other types of reactions are explored with WT phage as a scaffold such as conversion chemistry in a polyol solvent to access several intermetallic phases as well as co-precipitation reactions to access ternary oxides. Chapter 4 focuses on combining research from chapter 2 and chapter 3 to create a bi-functional material that utilizes both specific and non-specific peptide interactions with inorganic materials on the surface of M13 to attach two different types of nanomaterials. The example provided here is a magnetically recoverable hydrogenation catalyst made up of a pVIII region coated with rhodium nanoparticles held in place by non-specific peptide interactions and a pIII region attached to iron oxide nanoparticles via specific peptide interactions. This is the first example in the literature of a commercially available pIII bioengineered M13 bacteriophage forming a bi-functional material. This research provides a methodology to design and build single and multi-component materials on the surface of bacteriophage M13 without the necessity for additional bioengineering and library characterization. The simplicity of use will make the technique available to a wider variety of researchers in the materials science community.

Survey of in-situ and remote sensing methods for soil moisture determination

NASA Technical Reports Server (NTRS)

Schmugge, T. J.; Jackson, T. J.; Mckim, H. L.

1981-01-01

General methods for determining the moisture content in the surface layers of the soil based on in situ or point measurements, soil water models and remote sensing observations are surveyed. In situ methods described include gravimetric techniques, nuclear techniques based on neutron scattering or gamma-ray attenuation, electromagnetic techniques, tensiometric techniques and hygrometric techniques. Soil water models based on column mass balance treat soil moisture contents as a result of meteorological inputs (precipitation, runoff, subsurface flow) and demands (evaporation, transpiration, percolation). The remote sensing approaches are based on measurements of the diurnal range of surface temperature and the crop canopy temperature in the thermal infrared, measurements of the radar backscattering coefficient in the microwave region, and measurements of microwave emission or brightness temperature. Advantages and disadvantages of the various methods are pointed out, and it is concluded that a successful monitoring system must incorporate all of the approaches considered.

Telephone survey to investigate relationships between onychectomy or onychectomy technique and house soiling in cats.

PubMed

Gerard, Amanda F; Larson, Mandy; Baldwin, Claudia J; Petersen, Christine

2016-09-15

OBJECTIVE To determine whether associations existed between onychectomy or onychectomy technique and house soiling in cats. DESIGN Cross-sectional study. SAMPLE 281 owners of 455 cats in Polk County, Iowa, identified via a list of randomly selected residential phone numbers of cat owners in that region. PROCEDURES A telephone survey was conducted to collect information from cat owners on factors hypothesized a priori to be associated with house soiling, including cat sex, reproductive status, medical history, and onychectomy history. When cats that had undergone onychectomy were identified, data were collected regarding the cat's age at the time of the procedure and whether a carbon dioxide laser (CDL) had been used. Information on history of house soiling behavior (urinating or defecating outside the litter box) was also collected. RESULTS Onychectomy technique was identified as a risk factor for house soiling. Cats for which a non-CDL technique was used had a higher risk of house soiling than cats for which the CDL technique was used. Cats that had undergone onychectomy and that lived in a multicat (3 to 5 cats) household were more than 3 times as likely to have house soiled as were single-housed cats with intact claws. CONCLUSIONS AND CLINICAL RELEVANCE Results of this cross-sectional study suggested that use of the CDL technique for onychectomy could decrease the risk of house soiling by cats relative to the risk associated with other techniques. This and other findings can be used to inform the decisions of owners and veterinarians when considering elective onychectomy for cats.

Bioengineering strategies to generate artificial protein complexes.

PubMed

Kim, Heejae; Siu, Ka-Hei; Raeeszadeh-Sarmazdeh, Maryam; Sun, Qing; Chen, Qi; Chen, Wilfred

2015-08-01

For many applications, increasing synergy between distinct proteins through organization is important for the specificity, regulation, and overall reaction efficiency. Although there are many examples of protein complexes in nature, a generalized method to create these complexes remains elusive. Many conventional techniques such as random chemical conjugation, physical adsorption onto surfaces, and encapsulation within matrices are imprecise approaches and can lead to deactivation of protein native functionalities. More "bio-friendly" approaches such as genetically fused proteins and biological scaffolds often can result in low yields and low complex stability. Alternatively, site-specific protein conjugation or ligation can generate artificial protein complexes that preserve the native functionalities of protein domains and maintain stability through covalent bonds. In this review, we describe three distinct methods to synthesize artificial protein complexes (genetic incorPoration of unnatural amino acids to introduce bio-orthogonal azide and alkyne groups to proteins, split-intein based expressed protein ligation, and sortase mediated ligation) and highlight interesting applications for each technique. © 2015 Wiley Periodicals, Inc.

Recent Advances in 3D Printing of Aliphatic Polyesters.

PubMed

Chiulan, Ioana; Frone, Adriana Nicoleta; Brandabur, Călin; Panaitescu, Denis Mihaela

2017-12-24

3D printing represents a valuable alternative to traditional processing methods, clearly demonstrated by the promising results obtained in the manufacture of various products, such as scaffolds for regenerative medicine, artificial tissues and organs, electronics, components for the automotive industry, art objects and so on. This revolutionary technique showed unique capabilities for fabricating complex structures, with precisely controlled physical characteristics, facile tunable mechanical properties, biological functionality and easily customizable architecture. In this paper, we provide an overview of the main 3D-printing technologies currently employed in the case of poly (lactic acid) (PLA) and polyhydroxyalkanoates (PHA), two of the most important classes of thermoplastic aliphatic polyesters. Moreover, a short presentation of the main 3D-printing methods is briefly discussed. Both PLA and PHA, in the form of filaments or powder, proved to be suitable for the fabrication of artificial tissue or scaffolds for bone regeneration. The processability of PLA and PHB blends and composites fabricated through different 3D-printing techniques, their final characteristics and targeted applications in bioengineering are thoroughly reviewed.

Intercomparison of Lab-Based Soil Water Extraction Methods for Stable Water Isotope Analysis

NASA Astrophysics Data System (ADS)

Pratt, D.; Orlowski, N.; McDonnell, J.

2016-12-01

The effect of pore water extraction technique on resultant isotopic signature is poorly understood. Here we present results of an intercomparison of five common lab-based soil water extraction techniques: high pressure mechanical squeezing, centrifugation, direct vapor equilibration, microwave extraction, and cryogenic extraction. We applied five extraction methods to two physicochemically different standard soil types (silty sand and clayey loam) that were oven-dried and rewetted with water of known isotopic composition at three different gravimetric water contents (8, 20, and 30%). We tested the null hypothisis that all extraction techniques would provide the same isotopic result independent from soil type and water content. Our results showed that the extraction technique had a significant effect on the soil water isotopic composition. Each method exhibited deviations from spiked reference water, with soil type and water content showing a secondary effect. Cryogenic extraction showed the largest deviations from the reference water, whereas mechanical squeezing and centrifugation provided the closest match to the reference water for both soil types. We also compared results for each extraction technique that produced liquid water on both an OA-ICOS and IRMS; differences between them were negligible.

Environmental Electrokinetics for a sustainable subsurface.

PubMed

Lima, A T; Hofmann, A; Reynolds, D; Ptacek, C J; Van Cappellen, P; Ottosen, L M; Pamukcu, S; Alshawabekh, A; O'Carroll, D M; Riis, C; Cox, E; Gent, D B; Landis, R; Wang, J; Chowdhury, A I A; Secord, E L; Sanchez-Hachair, A

2017-08-01

Soil and groundwater are key components in the sustainable management of the subsurface environment. Source contamination is one of its main threats and is commonly addressed using established remediation techniques such as in-situ chemical oxidation (ISCO), in-situ chemical reduction (ISCR; most notably using zero-valent iron [ZVI]), enhanced in-situ bioremediation (EISB), phytoremediation, soil-washing, pump-and-treat, soil vapour extraction (SVE), thermal treatment, and excavation and disposal. Decades of field applications have shown that these techniques can successfully treat or control contaminants in higher permeability subsurface materials such as sands, but achieve only limited success at sites where low permeability soils, such as silts and clays, prevail. Electrokinetics (EK), a soil remediation technique mostly recognized in in-situ treatment of low permeability soils, has, for the last decade, been combined with more conventional techniques and can significantly enhance the performance of several of these remediation technologies, including ISCO, ISCR, EISB and phytoremediation. Herein, we discuss the use of emerging EK techniques in tandem with conventional remediation techniques, to achieve improved remediation performance. Furthermore, we highlight new EK applications that may come to play a role in the sustainable treatment of the contaminated subsurface. Copyright © 2017 Elsevier Ltd. All rights reserved.

Multi-criteria manufacturability indices for ranking high-concentration monoclonal antibody formulations.

PubMed

Yang, Yang; Velayudhan, Ajoy; Thornhill, Nina F; Farid, Suzanne S

2017-09-01

The need for high-concentration formulations for subcutaneous delivery of therapeutic monoclonal antibodies (mAbs) can present manufacturability challenges for the final ultrafiltration/diafiltration (UF/DF) step. Viscosity levels and the propensity to aggregate are key considerations for high-concentration formulations. This work presents novel frameworks for deriving a set of manufacturability indices related to viscosity and thermostability to rank high-concentration mAb formulation conditions in terms of their ease of manufacture. This is illustrated by analyzing published high-throughput biophysical screening data that explores the influence of different formulation conditions (pH, ions, and excipients) on the solution viscosity and product thermostability. A decision tree classification method, CART (Classification and Regression Tree) is used to identify the critical formulation conditions that influence the viscosity and thermostability. In this work, three different multi-criteria data analysis frameworks were investigated to derive manufacturability indices from analysis of the stress maps and the process conditions experienced in the final UF/DF step. Polynomial regression techniques were used to transform the experimental data into a set of stress maps that show viscosity and thermostability as functions of the formulation conditions. A mathematical filtrate flux model was used to capture the time profiles of protein concentration and flux decay behavior during UF/DF. Multi-criteria decision-making analysis was used to identify the optimal formulation conditions that minimize the potential for both viscosity and aggregation issues during UF/DF. Biotechnol. Bioeng. 2017;114: 2043-2056. © 2017 The Authors. Biotechnology and Bioengineering Published by Wiley Perodicals, Inc. © 2017 The Authors. Biotechnology and Bioengineering Published by Wiley Perodicals, Inc.

Advanced multivariate data analysis to determine the root cause of trisulfide bond formation in a novel antibody-peptide fusion.

PubMed

Goldrick, Stephen; Holmes, William; Bond, Nicholas J; Lewis, Gareth; Kuiper, Marcel; Turner, Richard; Farid, Suzanne S

2017-10-01

Product quality heterogeneities, such as a trisulfide bond (TSB) formation, can be influenced by multiple interacting process parameters. Identifying their root cause is a major challenge in biopharmaceutical production. To address this issue, this paper describes the novel application of advanced multivariate data analysis (MVDA) techniques to identify the process parameters influencing TSB formation in a novel recombinant antibody-peptide fusion expressed in mammalian cell culture. The screening dataset was generated with a high-throughput (HT) micro-bioreactor system (Ambr TM 15) using a design of experiments (DoE) approach. The complex dataset was firstly analyzed through the development of a multiple linear regression model focusing solely on the DoE inputs and identified the temperature, pH and initial nutrient feed day as important process parameters influencing this quality attribute. To further scrutinize the dataset, a partial least squares model was subsequently built incorporating both on-line and off-line process parameters and enabled accurate predictions of the TSB concentration at harvest. Process parameters identified by the models to promote and suppress TSB formation were implemented on five 7 L bioreactors and the resultant TSB concentrations were comparable to the model predictions. This study demonstrates the ability of MVDA to enable predictions of the key performance drivers influencing TSB formation that are valid also upon scale-up. Biotechnol. Bioeng. 2017;114: 2222-2234. © 2017 The Authors. Biotechnology and Bioengineering Published by Wiley Periodicals, Inc. © 2017 The Authors. Biotechnology and Bioengineering Published by Wiley Periodicals, Inc.

Topsoil moisture mapping using geostatistical techniques under different Mediterranean climatic conditions.

PubMed

Martínez-Murillo, J F; Hueso-González, P; Ruiz-Sinoga, J D

2017-10-01

Soil mapping has been considered as an important factor in the widening of Soil Science and giving response to many different environmental questions. Geostatistical techniques, through kriging and co-kriging techniques, have made possible to improve the understanding of eco-geomorphologic variables, e.g., soil moisture. This study is focused on mapping of topsoil moisture using geostatistical techniques under different Mediterranean climatic conditions (humid, dry and semiarid) in three small watersheds and considering topography and soil properties as key factors. A Digital Elevation Model (DEM) with a resolution of 1×1m was derived from a topographical survey as well as soils were sampled to analyzed soil properties controlling topsoil moisture, which was measured during 4-years. Afterwards, some topography attributes were derived from the DEM, the soil properties analyzed in laboratory, and the topsoil moisture was modeled for the entire watersheds applying three geostatistical techniques: i) ordinary kriging; ii) co-kriging considering as co-variate topography attributes; and iii) co-kriging ta considering as co-variates topography attributes and gravel content. The results indicated topsoil moisture was more accurately mapped in the dry and semiarid watersheds when co-kriging procedure was performed. The study is a contribution to improve the efficiency and accuracy of studies about the Mediterranean eco-geomorphologic system and soil hydrology in field conditions. Copyright © 2017 Elsevier B.V. All rights reserved.

Lots of legacy soil data are available, but which data do we need to collect for regional land use analysis?

NASA Astrophysics Data System (ADS)

Hendriks, Chantal; Stoorvogel, Jetse; Claessens, Lieven

2015-04-01

In the past, soil surveying techniques were mainly developed for qualitative regional land use analysis (RLUA) like land evaluation and land use planning. Conventional soil survey techniques usually describe soil types according to a soil classification scheme (e.g. Soil Taxonomy and World Reference Base). These soil surveys met the requirements of qualitative land evaluation and land use planning. However, during the last decades there is an increased need for quantitative RLUA resulting in an increased demand for quantitative soil data. The rapid developments in computing technology and the availability of auxiliary information (e.g. remote sensing and digital elevation models) allowed for the development of new soil surveying techniques like digital soil mapping. These new soil surveying techniques aim to produce continuous maps of quantitative functional soil properties. However, RLUA nowadays requires soil data that include a description of the spatial variability of the entire pedon in which correlations between soil properties are retained. Current surveying techniques do not fully fulfil these requirements resulting in a gap between the supply and demand of soil data in RLUA. The gap is caused by the fact that legacy soil data are collected for different purposes and inherently have different assumptions on e.g., soil variability. In this study, some of these assumptions are tested and verified using primary soil data collected during a recent field survey in Machakos and Makueni County (Kenya). Subsequently an ongoing RLUA, the Global Yield Gap Atlas (GYGA) project, is taken as a case study to evaluate the effect of different sources of soil data on the results of the RLUA. The results of the study show that various assumptions underlying the soil survey hamper the quality requirements of soil data for the specific objectives of the RLUA. To give a few examples: mapping soil properties individually ignores correlations between them, soil properties differed significantly between natural and agricultural land, discrete soil mapping units described by a representative soil profile showed internal variability. None of the legacy datasets fitted the requirements of the RLUA. However, resources to collect additional primary soil data are limited. Evaluating legacy data allows us to identify the soil data that we need to collect. Legacy data lack information on e.g. soil management and effective rooting depth, while these data are often required for RLUA. This results in the use of assumptions, estimations and simplifications in a RLUA. The choice of legacy data has a profound effect on the results of a RLUA. The GYGA case study shows for example that different sources of soil input data can lead to differences in simulated water-limited maize yields of up to 3 ton/ha.

Measurement of technetium-99 in Marshall Islands soil samples by ICP-MS

PubMed

Tagami; Uchida; Hamilton; Robison

2000-07-01

Extraction techniques for recovery of technetium-99 (99Tc) for Inductively Coupled Plasma Mass Spectrometry (ICP-MS) measurements were evaluated using soil samples collected from the Marshall Islands. The results of three different extraction techniques were compared: (MI) acid leaching of Tc from ashed soil; (M2) acid leaching of Tc from raw dry soil; and (M3) Tc volatilization from ashed soil using a combustion apparatus. Total Tc recoveries varied considerably between the extraction techniques but each method yielded similar analytical results for 99Tc. Applications of these extraction techniques to a series of environmental samples and ICP-MS measurements have yielded first data on the 99Tc content of Marshall Islands soil samples contaminated with close-in radioactive fallout from nuclear weapons testing. The 99Tc activity concentration in the soil samples ranged between 0.1 and 1.1 mBq g(-1) dry weight (dw). The limit of detection for 99Tc by ICP-MS was 0.17 mBq per sample or 0.014 mBq g(-1) dw under standard operating conditions.

MEASUREMENT OF NATURAL RADIONUCLIDES AND EXTERNAL RADIATION EXPOSURE DUE TO FLY ASH FROM A COAL-FIRED POWER PLANT (SPAIN) DEPOSITED ON SOILS. COMPARISON USING TWO DIFFERENT MEASUREMENT TECHNIQUES.

PubMed

Corbacho, J A; Baeza, A

2018-05-17

The evaluation of the radiological impact in soils due to the fly-ash ponds using both in situ techniques and laboratory based measurements is presented. In order to check the in situ techniques capabilities for monitoring this type of industries, a comparison between both techniques was performed. A characterization of external radiation exposure in the fly-ash pond and in its surrounding soils was made. The associated external radiological hazard due to the fly-ash pond has been evaluated. In situ techniques could be used to determine the radiological impact on soils due to fly-ash deposition, but its use could be limited due to the associated uncertainties.

Bioengineering and Stem Cell Technology in the Treatment of Congenital Heart Disease

PubMed Central

Bosman, Alexis; Edel, Michael J.; Blue, Gillian; Dilley, Rodney J.; Harvey, Richard P.; Winlaw, David S.

2015-01-01

Congenital heart disease places a significant burden on the individual, family and community despite significant advances in our understanding of aetiology and treatment. Early research in ischaemic heart disease has paved the way for stem cell technology and bioengineering, which promises to improve both structural and functional aspects of disease. Stem cell therapy has demonstrated significant improvements in cardiac function in adults with ischaemic heart disease. This finding, together with promising case studies in the paediatric setting, demonstrates the potential for this treatment in congenital heart disease. Furthermore, induced pluripotent stems cell technology, provides a unique opportunity to address aetiological, as well as therapeutic, aspects of disease. PMID:26239354

Perspectives on MEMS in bioengineering: a novel capacitive position microsensor.

PubMed

Pedrocchi, A; Hoen, S; Ferrigno, G; Pedotti, A

2000-01-01

We describe a novel capacitive position sensor using micromachining to achieve high sensitivity and large range of motion. These sensors require a new theoretical framework to describe and optimize their performance. Employing a complete description of the electrical fields, the sensor should deviate from the standard geometries used for capacitive sensors. By this optimization, the sensor gains a twofold increase in sensitivity. Results on a PC board 10x model imply that the micromachined sensor should achieve a sensitivity of less than 10 nm over 500-micron range of travel. Some bioengineering applications are addressed, including positioning of micromirrors for laser surgery and dose control for implantable drug delivery systems.

Bioengineering of Tobacco Mosaic Virus to Create a Non-Infectious Positive Control for Ebola Diagnostic Assays

NASA Astrophysics Data System (ADS)

Lam, Patricia; Gulati, Neetu M.; Stewart, Phoebe L.; Keri, Ruth A.; Steinmetz, Nicole F.

2016-03-01

The 2014 Ebola epidemic is the largest to date. There is no cure or treatment for this deadly disease; therefore there is an urgent need to develop new diagnostics to accurately detect Ebola. Current RT-PCR assays lack sensitive and reliable positive controls. To address this critical need, we devised a bio-inspired positive control for use in RT-PCR diagnostics: we encapsulated scrambled Ebola RNA sequences inside of tobacco mosaic virus to create a biomimicry that is non-infectious, but stable, and could therefore serve as a positive control in Ebola diagnostic assays. Here, we report the bioengineering and validation of this probe.

Decreasing soil erosion rates with evolving land-use techniques in a central European catchment

NASA Astrophysics Data System (ADS)

Larsen, Annegret; Heckmann, Tobias; Hans-Rudolf, Bork; Alexander, Fuelling

2015-04-01

Agricultural societies around the world have caused accelerated soil erosion. Soil erosion and a decrease in soil fertility may also have caused the abandonment of entire landscapes and the collapse of civilizations. In central Europe, Medieval land-use is thought to have lead to the largest loss of top soil in history, which in turn lead to a malnutrition of the population and abandonment of agricultural land. However, this might be only part of the picture, as people are also able to adapt to changing environmental conditions, including the type of land-use they adopt. Within a catchment in the central European mountain belt, we were able to distinguish the evolution between three main types of land-use techniques between ~ 900 AD and 1950 AD: horticulture, agriculture and shifting cultivation. We were able to relate these techniques with different soil erosion rates, which differ by an order of magnitude, ranging from 0.83 ± 0.09 mm/yr to 1.62 ± 0.17 mm/yr. Using high-resolution surface data and chrono-stratigraphical methods in combination with soil charcoal analysis, we were able to reconstruct past land-use techniques on a local scale. This illustrates that less erosive and more sustainable techniques were developed through time, and hypothesize that people were able to adapt to the less favorable environmental conditions by changing the cultivation techniques. Although cultural adaptation to changing environmental conditions has been extensively discussed, this study is able to quantitatively demonstrate improved soil management with evolving land-use in central Europe.

Cerebral Aneurysms Fact Sheet

MedlinePlus

... Dementias Epilepsy Parkinson's Disease Spinal Cord Injury Traumatic Brain Injury Focus On Tools & Topics Bioengineering Neural Interfaces Biomarkers Health Disparities Stem Cell Trans-Agency Activities ...

Nucleic Acid Engineering: RNA Following the Trail of DNA.

PubMed

Kim, Hyejin; Park, Yongkuk; Kim, Jieun; Jeong, Jaepil; Han, Sangwoo; Lee, Jae Sung; Lee, Jong Bum

2016-02-08

The self-assembly feature of the naturally occurring biopolymer, DNA, has fascinated researchers in the fields of materials science and bioengineering. With the improved understanding of the chemical and structural nature of DNA, DNA-based constructs have been designed and fabricated from two-dimensional arbitrary shapes to reconfigurable three-dimensional nanodevices. Although DNA has been used successfully as a building block in a finely organized and controlled manner, its applications need to be explored. Hence, with the myriad of biological functions, RNA has recently attracted considerable attention to further the application of nucleic acid-based structures. This Review categorizes different approaches of engineering nucleic acid-based structures and introduces the concepts, principles, and applications of each technique, focusing on how DNA engineering is applied as a guide to RNA engineering.

New technique for simulation of microgravity and variable gravity conditions

NASA Astrophysics Data System (ADS)

de la Rosa, R.; Alonso, A.; Abasolo, D. E.; Hornero, R.; Abasolo, D. E.

2005-08-01

This paper suggests a microgravity or variable gravity conditions simulator based on a Neuromuscular Control System (NCS), working as a man-machine interface. The subject under training lies on an active platform that counteracts his weight. And a Virtual Reality (VR) system displays a simulated environment, where the subject can interact a number of settings: extravehicular activity (EVA), walking on the Moon or training the limb response faced with variable acceleration scenes. Results related to real-time voluntary control have been achieved with neuromuscular interfaces at the Bioengineering Group in the University of Valladolid. It has been employed a custom real-time system to train arm movements. This paper outlines a more complex design that can complement other training facilities, like the buoyancy pool, in the task of microgravity simulation.

System for the Management of Trauma and Emergency Surgery in Space

NASA Technical Reports Server (NTRS)

Houtchens, B.

1984-01-01

The need to develop a systems approach to the management of trauma and other major clinical medical events in space along with appropriate development and evaluation of surgical techniques and required hardware was investigated. A prototype zero gravity surgical module was constructed and tested aboard a KC-135 aircraft during parabolic arc zero G flight. To insure parity of quality care to that available on Earth, it was recommended that a clinical medical and bioengineering advisory committee define and help develop the necessary components of the clinical medical care system for the space station and lunar base. Key components of the system are aerospace surgical training, medical equipment development, including support hardware and software, rapid access to a network of specialty expertise, and continued research and development.

Bioengineering of the Plant Culture of Capsicum frutescens with Vanillin Synthase Gene for the Production of Vanillin.

PubMed

Chee, Marcus Jenn Yang; Lycett, Grantley W; Khoo, Teng-Jin; Chin, Chiew Foan

2017-01-01

Production of vanillin by bioengineering has gained popularity due to consumer demand toward vanillin produced by biological systems. Natural vanillin from vanilla beans is very expensive to produce compared to its synthetic counterpart. Current bioengineering works mainly involve microbial biotechnology. Therefore, alternative means to the current approaches are constantly being explored. This work describes the use of vanillin synthase (VpVAN), to bioconvert ferulic acid to vanillin in a plant system. The VpVAN enzyme had been shown to directly convert ferulic acid and its glucoside into vanillin and its glucoside, respectively. As the ferulic acid precursor and vanillin were found to be the intermediates in the phenylpropanoid biosynthetic pathway of Capsicum species, this work serves as a proof-of-concept for vanillin production using Capsicum frutescens (C. frutescens or hot chili pepper). The cells of C. frutescens were genetically transformed with a codon optimized VpVAN gene via biolistics. Transformed explants were selected and regenerated into callus. Successful integration of the gene cassette into the plant genome was confirmed by polymerase chain reaction. High-performance liquid chromatography was used to quantify the phenolic compounds detected in the callus tissues. The vanillin content of transformed calli was 0.057% compared to 0.0003% in untransformed calli.

Perfusion-decellularized pancreas as a natural 3D scaffold for pancreatic tissue and whole organ engineering

PubMed Central

Goh, Saik-Kia; Bertera, Suzanne; Olsen, Phillip; Candiello, Joe; Halfter, Willi; Uechi, Guy; Balasubramani, Manimalha; Johnson, Scott; Sicari, Brian; Kollar, Elizabeth; Badylak, Stephen F.; Banerjee, Ipsita

2013-01-01

Approximately 285 million people worldwide suffer from diabetes, with insulin supplementation as the most common treatment measure. Regenerative medicine approaches such as a bioengineered pancreas has been proposed as potential therapeutic alternatives. A bioengineered pancreas will benefit from the development of a bioscaffold that supports and enhances cellular function and tissue development. Perfusion-decellularized organs are a likely candidate for use in such scaffolds since they mimic compositional, architectural and biomechanical nature of a native organ. In this study, we investigate perfusion-decellularization of whole pancreas and the feasibility to recellularize the whole pancreas scaffold with pancreatic cell types. Our result demonstrates that perfusion-decellularization of whole pancreas effectively removes cellular and nuclear material while retaining intricate three-dimensional microarchitecture with perfusable vasculature and ductal network and crucial extracellular matrix (ECM) components. To mimic pancreatic cell composition, we recellularized the whole pancreas scaffold with acinar and beta cell lines and cultured up to 5 days. Our result shows successful cellular engraftment within the decellularized pancreas, and the resulting graft gave rise to strong up-regulation of insulin gene expression. These findings support biological utility of whole pancreas ECM as a biomaterials scaffold for supporting and enhancing pancreatic cell functionality and represent a step toward bioengineered pancreas using regenerative medicine approaches. PMID:23787110

Effectiveness assessment of soil conservation measures in reducing soil erosion in Baiquan County of Northeastern China by using (137)Cs techniques.

PubMed

Zhang, Qing-Wen; Li, Yong

2014-05-01

Accelerated soil erosion is considered as a major land degradation process resulting in increased sediment production and sediment-associated nutrient inputs to the rivers. Over the last decade, several soil conservation programs for erosion control have been conducted throughout Northeastern China. Reliable information on soil erosion rates is an essential prerequisite to assess the effectiveness of soil conservation measures. A study was carried out in Baiquan County of Northeastern China to assess the effectiveness of soil conservation measures in reducing soil erosion using the (137)Cs tracer technique and related techniques. This study reports the use of (137)Cs measurements to quantify medium-term soil erosion rates in traditional slope farmland, contour cropping farmland and terrace farmland in the Dingjiagou catchment and the Xingsheng catchment of Baiquan County. The (137)Cs reference inventory of 2532 ± 670 Bq m(-2) was determined. Based on the principle of the (137)Cs tracer technique, soil erosion rates were estimated. The results showed that severe erosion on traditional slope farmland is the dominant soil erosion process in the area. The terrace measure reduced soil erosion rates by 16% for the entire slope. Typical net soil erosion rates are estimated to be 28.97 Mg per hectare per year for traditional slope farmland and 25.04 Mg per hectare per year for terrace farmland in the Dingjiagou catchment. In contrast to traditional slope farmland with a soil erosion rate of 34.65 Mg per hectare per year, contour cultivation reduced the soil erosion rate by 53% resulting in a soil erosion rate of 22.58 Mg per hectare per year in the Xingsheng catchment. These results indicated that soil losses can be controlled by changing tillage practices from the traditional slope farmland cultivation to the terrace or contour cultivation.

3D-printed microfluidic chips with patterned, cell-laden hydrogel constructs.

PubMed

Knowlton, Stephanie; Yu, Chu Hsiang; Ersoy, Fulya; Emadi, Sharareh; Khademhosseini, Ali; Tasoglu, Savas

2016-06-20

Three-dimensional (3D) printing offers potential to fabricate high-throughput and low-cost fabrication of microfluidic devices as a promising alternative to traditional techniques which enables efficient design iterations in the development stage. In this study, we demonstrate a single-step fabrication of a 3D transparent microfluidic chip using two alternative techniques: a stereolithography-based desktop 3D printer and a two-step fabrication using an industrial 3D printer based on polyjet technology. This method, compared to conventional fabrication using relatively expensive materials and labor-intensive processes, presents a low-cost, rapid prototyping technique to print functional 3D microfluidic chips. We enhance the capabilities of 3D-printed microfluidic devices by coupling 3D cell encapsulation and spatial patterning within photocrosslinkable gelatin methacryloyl (GelMA). The platform presented here serves as a 3D culture environment for long-term cell culture and growth. Furthermore, we have demonstrated the ability to print complex 3D microfluidic channels to create predictable and controllable fluid flow regimes. Here, we demonstrate the novel use of 3D-printed microfluidic chips as controllable 3D cell culture environments, advancing the applicability of 3D printing to engineering physiological systems for future applications in bioengineering.

Multi-scale Observation of Biological Interactions of Nanocarriers: from Nano to Macro

PubMed Central

Jin, Su-Eon; Bae, Jin Woo; Hong, Seungpyo

2010-01-01

Microscopic observations have played a key role in recent advancements in nanotechnology-based biomedical sciences. In particular, multi-scale observation is necessary to fully understand the nano-bio interfaces where a large amount of unprecedented phenomena have been reported. This review describes how to address the physicochemical and biological interactions of nanocarriers within the biological environments using microscopic tools. The imaging techniques are categorized based on the size scale of detection. For observation of the nano-scale biological interactions of nanocarriers, we discuss atomic force microscopy (AFM), scanning electron microscopy (SEM), and transmission electron microscopy (TEM). For the micro to macro-scale (in vitro and in vivo) observation, we focus on confocal laser scanning microscopy (CLSM) as well as in vivo imaging systems such as magnetic resonance imaging (MRI), superconducting quantum interference devices (SQUIDs), and IVIS®. Additionally, recently developed combined techniques such as AFM-CLSM, correlative Light and Electron Microscopy (CLEM), and SEM-spectroscopy are also discussed. In this review, we describe how each technique helps elucidate certain physicochemical and biological activities of nanocarriers such as dendrimers, polymers, liposomes, and polymeric/inorganic nanoparticles, thus providing a toolbox for bioengineers, pharmaceutical scientists, biologists, and research clinicians. PMID:20232368

Probing the Interaction between Nanoparticles and Lipid Membranes by Quartz Crystal Microbalance with Dissipation Monitoring

PubMed Central

Yousefi, Nariman; Tufenkji, Nathalie

2016-01-01

There is increasing interest in using quartz crystal microbalance with dissipation monitoring (QCM-D) to investigate the interaction of nanoparticles (NPs) with model surfaces. The high sensitivity, ease of use and the ability to monitor interactions in real-time has made it a popular technique for colloid chemists, biologists, bioengineers, and biophysicists. QCM-D has been recently used to probe the interaction of NPs with supported lipid bilayers (SLBs) as model cell membranes. The interaction of NPs with SLBs is highly influenced by the quality of the lipid bilayers. Unlike many surface sensitive techniques, by using QCM-D, the quality of SLBs can be assessed in real-time, hence QCM-D studies on SLB-NP interactions are less prone to the artifacts arising from bilayers that are not well formed. The ease of use and commercial availability of a wide range of sensor surfaces also have made QCM-D a versatile tool for studying NP interactions with lipid bilayers. In this review, we summarize the state-of-the-art on QCM-D based techniques for probing the interactions of NPs with lipid bilayers. PMID:27995125

Bioengineered human acellular vessels for dialysis access in patients with end-stage renal disease: two phase 2 single-arm trials

PubMed Central

Lawson, Jeffrey H; Glickman, Marc H; Ilzecki, Marek; Jakimowicz, Tomasz; Jaroszynski, Andrzej; Peden, Eric K; Pilgrim, Alison J; Prichard, Heather L; Guziewicz, Malgorzata; Przywara, Stanisław; Szmidt, Jacek; Turek, Jakub; Witkiewicz, Wojciech; Zapotoczny, Norbert; Zubilewicz, Tomasz; Niklason, Laura E

2016-01-01

Summary Background For patients with end-stage renal disease who are not candidates for fistula, dialysis access grafts are the best option for chronic haemodialysis. However, polytetrafluoroethylene arteriovenous grafts are prone to thrombosis, infection, and intimal hyperplasia at the venous anastomosis. We developed and tested a bioengineered human acellular vessel as a potential solution to these limitations in dialysis access. Methods We did two single-arm phase 2 trials at six centres in the USA and Poland. We enrolled adults with end-stage renal disease. A novel bioengineered human acellular vessel was implanted into the arms of patients for haemodialysis access. Primary endpoints were safety (freedom from immune response or infection, aneurysm, or mechanical failure, and incidence of adverse events), and efficacy as assessed by primary, primary assisted, and secondary patencies at 6 months. All patients were followed up for at least 1 year, or had a censoring event. These trials are registered with ClinicalTrials.gov, NCT01744418 and NCT01840956. Findings Human acellular vessels were implanted into 60 patients. Mean follow-up was 16 months (SD 7·6). One vessel became infected during 82 patient-years of follow-up. The vessels had no dilatation and rarely had post-cannulation bleeding. At 6 months, 63% (95% CI 47–72) of patients had primary patency, 73% (57–81) had primary assisted patency, and 97% (85–98) had secondary patency, with most loss of primary patency because of thrombosis. At 12 months, 28% (17–40) had primary patency, 38% (26–51) had primary assisted patency, and 89% (74–93) had secondary patency. Interpretation Bioengineered human acellular vessels seem to provide safe and functional haemodialysis access, and warrant further study in randomised controlled trials. Funding Humacyte and US National Institutes of Health. PMID:27203778

RADON REDUCTION TECHNIQUES FOR EXISTING DETACHED HOUSES - TECHNICAL GUIDANCE (THIRD EDITION) FOR ACTIVE SOIL DEPRESSURIZATION SYSTEMS

EPA Science Inventory

This technical guidance document is designed to aid in the selection, design, installation and operation of indoor radon reduction techniques using soil depressurization in existing houses. Its emphasis is on active soil depressurization; i.e., on systems that use a fan to depre...

Remediation of soils contaminated with heavy metals with an emphasis on immobilization technology.

PubMed

Derakhshan Nejad, Zahra; Jung, Myung Chae; Kim, Ki-Hyun

2018-06-01

The major frequent contaminants in soil are heavy metals which may be responsible for detrimental health effects. The remediation of heavy metals in contaminated soils is considered as one of the most complicated tasks. Among different technologies, in situ immobilization of metals has received a great deal of attention and turned out to be a promising solution for soil remediation. In this review, remediation methods for removal of heavy metals in soil are explored with an emphasis on the in situ immobilization technique of metal(loid)s. Besides, the immobilization technique in contaminated soils is evaluated through the manipulation of the bioavailability of heavy metals using a range of soil amendment conditions. This technique is expected to efficiently alleviate the risk of groundwater contamination, plant uptake, and exposure to other living organisms. The efficacy of several amendments (e.g., red mud, biochar, phosphate rock) has been examined to emphasize the need for the simultaneous measurement of leaching and the phytoavailability of heavy metals. In addition, some amendments that are used in this technique are inexpensive and readily available in large quantities because they have been derived from bio-products or industrial by-products (e.g., biochar, red mud, and steel slag). Among different amendments, iron-rich compounds and biochars show high efficiency to remediate multi-metal contaminated soils. Thereupon, immobilization technique can be considered a preferable option as it is inexpensive and easily applicable to large quantities of contaminants derived from various sources.

Southern Great Plains 1997 hydrology experiment: The spatial and temporal distribution of soil moisture within a quarter section pasture field

NASA Technical Reports Server (NTRS)

Tsegaye, T.; Coleman, T.; Tadesse, W.; Rajbhandari, N.; Senwo, Z.; Crosson, W.; Surrency, J.

1998-01-01

Understanding the spatial and temporal distribution of soil moisture near the soil surface is important to relate ground truth data to remotely sensed data using an electronically scanned thinned array radiometer (ESTAR). The research was conducted at the A-ARM EF site in the Little Washita Watershed in Chickasha Oklahoma. Soil moisture was measured on a 100 x 100-m grid on a quarter section (0.8 km by 0.8 km) size field where the DOE A-ARM SWATS is located. This site has several drainage channels and small ponds. The site is under four different land use practices, namely active pastureland, non-grazed pastureland covered with thick grass, forest area covered with trees, and a single residential area. Soil moisture was measured with a Time Domain Reflectometry (TDR) Delta-T 6-cm theta-probe and gravimetric soil moisture (GSM) technique for the top 6 cm of the soil depth. A fourth order polynomial equation was fitted to each probe calibration curve. The correlation between TDR and GSM measurement technique ranges from 0.81 to 0.91. Comparison of the spatial and temporal distribution of soil moisture measured by the TDR and GSM techniques showed very strong similarities. Such TDR probes can be used successfully to replace the GSM techniques to measure soil moisture content rapidly and accurately with site specific calibration.

Detection of terrain indices related to soil salinity and mapping salt-affected soils using remote sensing and geostatistical techniques.

PubMed

Triki Fourati, Hela; Bouaziz, Moncef; Benzina, Mourad; Bouaziz, Samir

2017-04-01

Traditional surveying methods of soil properties over landscapes are dramatically cost and time-consuming. Thus, remote sensing is a proper choice for monitoring environmental problem. This research aims to study the effect of environmental factors on soil salinity and to map the spatial distribution of this salinity over the southern east part of Tunisia by means of remote sensing and geostatistical techniques. For this purpose, we used Advanced Spaceborne Thermal Emission and Reflection Radiometer data to depict geomorphological parameters: elevation, slope, plan curvature (PLC), profile curvature (PRC), and aspect. Pearson correlation between these parameters and soil electrical conductivity (EC soil ) showed that mainly slope and elevation affect the concentration of salt in soil. Moreover, spectral analysis illustrated the high potential of short-wave infrared (SWIR) bands to identify saline soils. To map soil salinity in southern Tunisia, ordinary kriging (OK), minimum distance (MD) classification, and simple regression (SR) were used. The findings showed that ordinary kriging technique provides the most reliable performances to identify and classify saline soils over the study area with a root mean square error of 1.83 and mean error of 0.018.

Fungal Genetics and Functional Diversity of Microbial Communities in the Soil under Long-Term Monoculture of Maize Using Different Cultivation Techniques

PubMed Central

Gałązka, Anna; Grządziel, Jarosław

2018-01-01

Fungal diversity in the soil may be limited under natural conditions by inappropriate environmental factors such as: nutrient resources, biotic and abiotic factors, tillage system and microbial interactions that prevent the occurrence or survival of the species in the environment. The aim of this paper was to determine fungal genetic diversity and community level physiological profiling of microbial communities in the soil under long-term maize monoculture. The experimental scheme involved four cultivation techniques: direct sowing (DS), reduced tillage (RT), full tillage (FT), and crop rotation (CR). Soil samples were taken in two stages: before sowing of maize (DSBS-direct sowing, RTBS-reduced tillage, FTBS-full tillage, CRBS-crop rotation) and the flowering stage of maize growth (DSF-direct sowing, RTF-reduced tillage, FTF-full tillage, CRF-crop rotation). The following plants were used in the crop rotation: spring barley, winter wheat and maize. The study included fungal genetic diversity assessment by ITS-1 next generation sequencing (NGS) analyses as well as the characterization of the catabolic potential of microbial communities (Biolog EcoPlates) in the soil under long-term monoculture of maize using different cultivation techniques. The results obtained from the ITS-1 NGS technique enabled to classify and correlate the fungi species or genus to the soil metabolome. The research methods used in this paper have contributed to a better understanding of genetic diversity and composition of the population of fungi in the soil under the influence of the changes that have occurred in the soil under long-term maize cultivation. In all cultivation techniques, the season had a great influence on the fungal genetic structure in the soil. Significant differences were found on the family level (P = 0.032, F = 3.895), genus level (P = 0.026, F = 3.313) and on the species level (P = 0.033, F = 2.718). This study has shown that: (1) fungal diversity was changed under the influence different cultivation techniques; (2) techniques of maize cultivation and season were an important factors that can influence the biochemical activity of soil. Maize cultivated in direct sowing did not cause negative changes in the fungal structure, even making it more stable during seasonal changes; (3) full tillage and crop rotation may change fungal community and soil function. PMID:29441054

9 CFR 121.1 - Definitions.

Code of Federal Regulations, 2010 CFR

2010-01-01

..., fungi, rickettsiae, or protozoa), or infectious substance, or any naturally occurring, bioengineered, or... (including, but not limited to, bacteria, viruses, fungi, rickettsiae, or protozoa), or infectious substances...

9 CFR 121.1 - Definitions.

Code of Federal Regulations, 2012 CFR

2012-01-01

..., fungi, rickettsiae, or protozoa), or infectious substance, or any naturally occurring, bioengineered, or... (including, but not limited to, bacteria, viruses, fungi, rickettsiae, or protozoa), or infectious substances...

9 CFR 121.1 - Definitions.

Code of Federal Regulations, 2011 CFR

2011-01-01

..., fungi, rickettsiae, or protozoa), or infectious substance, or any naturally occurring, bioengineered, or... (including, but not limited to, bacteria, viruses, fungi, rickettsiae, or protozoa), or infectious substances...

Some questions of space bioengineering

NASA Technical Reports Server (NTRS)

Nyiri, L. K.

1977-01-01

Zero-gravity offers selective effect on growth and metabolic activity unicellular organisms as well as unique opportunities in purification of organic compounds. These make it possible to consider the biosynthesis and recovery of certain metabolites economically feasible in space. Design, construction and operation of systems for the above mentioned purposes requires interdisciplinary actions within the scope of a new discipline: space bioengineering. The problems and perspectives of this discipline particularly in the application of bioreactor-recovery systems in space to manufacture metabolites of high economic and scientific value. Special attention is paid to pivotal factors such as various mass transport phenomena, contamination control, automatic control of optimum environment and synchronization of the operation of the biological (biosynthesis) and the physiochemical (recovery-purification) systems.

Emergence of Three-Dimensional Printing Technology and Its Utility in Spine Surgery.

PubMed

Gadia, Akshay; Shah, Kunal; Nene, Abhay

2018-04-01

In the last decade, spine surgery has advanced tremendously. Tissue engineering and three-dimensional (3D) printing/additive manufacturing have provided promising new research avenues in the fields of medicine and orthopedics in recent literature, and their emergent role in spine surgery is encouraging. We reviewed recent articles that highlighted the role of 3D printing in medicine, orthopedics, and spine surgery and summarized the utility of 3D printing. 3D printing has shown promising results in various aspects of spine surgery and can be a useful tool for spine surgeons. The growing research on tissue bioengineering and its application in conjunction with additive manufacturing has revealed great potential for tissue bioengineering in the treatment of spinal ailments.

Emergence of Three-Dimensional Printing Technology and Its Utility in Spine Surgery

PubMed Central

Gadia, Akshay; Nene, Abhay

2018-01-01

In the last decade, spine surgery has advanced tremendously. Tissue engineering and three-dimensional (3D) printing/additive manufacturing have provided promising new research avenues in the fields of medicine and orthopedics in recent literature, and their emergent role in spine surgery is encouraging. We reviewed recent articles that highlighted the role of 3D printing in medicine, orthopedics, and spine surgery and summarized the utility of 3D printing. 3D printing has shown promising results in various aspects of spine surgery and can be a useful tool for spine surgeons. The growing research on tissue bioengineering and its application in conjunction with additive manufacturing has revealed great potential for tissue bioengineering in the treatment of spinal ailments. PMID:29713420

The Rapidly Evolving Concept of Whole Heart Engineering

PubMed Central

Dal Sasso, Eleonora; Menabò, Roberta; Di Lisa, Fabio; Gerosa, Gino

2017-01-01

Whole heart engineering represents an incredible journey with as final destination the challenging aim to solve end-stage cardiac failure with a biocompatible and living organ equivalent. Its evolution started in 2008 with rodent organs and is nowadays moving closer to clinical application thanks to scaling-up strategies to human hearts. This review will offer a comprehensive examination on the important stages to be reached for the bioengineering of the whole heart, by describing the approaches of organ decellularization, repopulation, and maturation so far applied and the novel technologies of potential interest. In addition, it will carefully address important demands that still need to be satisfied in order to move to a real clinical translation of the whole bioengineering heart concept. PMID:29250121

Development of a compact permanent magnet helicon plasma source for ion beam bioengineering.

PubMed

Kerdtongmee, P; Srinoum, D; Nisoa, M

2011-10-01

A compact helicon plasma source was developed as a millimeter-sized ion source for ion beam bioengineering. By employing a stacked arrangement of annular-shaped permanent magnets, a uniform axial magnetic flux density up to 2.8 kG was obtained. A cost effective 118 MHz RF generator was built for adjusting forward output power from 0 to 40 W. The load impedance and matching network were then analyzed. A single loop antenna and circuit matching elements were placed on a compact printed circuit board for 50 Ω impedance matching. A plasma density up to 1.1 × 10(12) cm(-3) in the 10 mm diameter tube under the magnetic flux density was achieved with 35 W applied RF power.

Development of a compact permanent magnet helicon plasma source for ion beam bioengineering

NASA Astrophysics Data System (ADS)

Kerdtongmee, P.; Srinoum, D.; Nisoa, M.

2011-10-01

A compact helicon plasma source was developed as a millimeter-sized ion source for ion beam bioengineering. By employing a stacked arrangement of annular-shaped permanent magnets, a uniform axial magnetic flux density up to 2.8 kG was obtained. A cost effective 118 MHz RF generator was built for adjusting forward output power from 0 to 40 W. The load impedance and matching network were then analyzed. A single loop antenna and circuit matching elements were placed on a compact printed circuit board for 50 Ω impedance matching. A plasma density up to 1.1 × 1012 cm-3 in the 10 mm diameter tube under the magnetic flux density was achieved with 35 W applied RF power.

Cellular and Molecular Bioengineering: A Tipping Point

PubMed Central

Brown, Genevieve; Butler, Peter J.; Chang, David W.; Chien, Shu; Clegg, Robert M.; Dewey, C. Forbes; Dong, Cheng; Guo, X. Edward; Helmke, Brian P.; Hess, Henry; Jacobs, Christopher R.; Kaunas, Roland R.; Kumar, Sanjay; Lu, Helen H.; Mathur, Anshu B.; Mow, Van C.; Schmid-Schönbein, Geert W.; Skoracki, Roman; Wang, Ning; Wang, Yingxiao; Zhu, Cheng

2012-01-01

In January of 2011, the Biomedical Engineering Society (BMES) and the Society for Physical Regulation in Biology and Medicine (SPRBM) held its inaugural Cellular and Molecular Bioengineering (CMBE) conference. The CMBE conference assembled worldwide leaders in the field of CMBE and held a very successful Round Table discussion among leaders. One of the action items was to collectively construct a white paper regarding the future of CMBE. Thus, the goal of this report is to emphasize the impact of CMBE as an emerging field, identify critical gaps in research that may be answered by the expertise of CMBE, and provide perspectives on enabling CMBE to address challenges in improving human health. Our goal is to provide constructive guidelines in shaping the future of CMBE. PMID:23264805

The knee meniscus: structure-function, pathophysiology, current repair techniques, and prospects for regeneration

PubMed Central

Makris, Eleftherios A.; Hadidi, Pasha; Athanasiou, Kyriacos A.

2011-01-01

Extensive scientific investigations in recent decades have established the anatomical, biomechanical, and functional importance that the meniscus holds within the knee joint. As a vital part of the joint, it acts to prevent the deterioration and degeneration of articular cartilage, and the onset and development of osteoarthritis. For this reason, research into meniscus repair has been the recipient of particular interest from the orthopedic and bioengineering communities. Current repair techniques are only effective in treating lesions located in the peripheral vascularized region of the meniscus. Healing lesions found in the inner avascular region, which functions under a highly demanding mechanical environment, is considered to be a significant challenge. An adequate treatment approach has yet to be established, though many attempts have been undertaken. The current primary method for treatment is partial meniscectomy, which commonly results in the progressive development of osteoarthritis. This drawback has shifted research interest towards the fields of biomaterials and bioengineering, where it is hoped that meniscal deterioration can be tackled with the help of tissue engineering. So far, different approaches and strategies have contributed to the in vitro generation of meniscus constructs, which are capable of restoring meniscal lesions to some extent, both functionally as well as anatomically. The selection of the appropriate cell source (autologous, allogeneic, or xenogeneic cells, or stem cells) is undoubtedly regarded as key to successful meniscal tissue engineering. Furthermore, a large variation of scaffolds for tissue engineering have been proposed and produced in experimental and clinical studies, although a few problems with these (e.g., byproducts of degradation, stress shielding) have shifted research interest towards new strategies (e.g., scaffoldless approaches, self-assembly). A large number of different chemical (e.g., TGF-β1, C-ABC) and mechanical stimuli (e.g., direct compression, hydrostatic pressure) have also been investigated, both in terms of encouraging functional tissue formation, as well as in differentiating stem cells. Even though the problems accompanying meniscus tissue engineering research are considerable, we are undoubtedly in the dawn of a new era, whereby recent advances in biology, engineering, and medicine are leading to the successful treatment of meniscal lesions. PMID:21764438

Effects of Earthworm (Eisenia fetida) and Wheat (Triticum aestivum) Straw Additions on Selected Properties of Petroleum-Contaminated Soils

Treesearch

Mac A. Callaham; Arthur J. Stewart; Clara Alarcon; Sara J. McMillen

2002-01-01

Current bioremediation techniques for petroleum-contaminated soils are designed to remove contaminants as quickly and efficiently as possible, but not necessarily with postremediation soil biological quality as a primary objective. To test a simple postbioremediation technique, we added earthworms (Eisenia fetida) or wheat (Triticum aestivum...

Development of real-time PCR technique for the estimation of population density of Pythium intermedium in forest soils.

PubMed

Li, Mingzhu; Senda, Masako; Komatsu, Tsutomu; Suga, Haruhisa; Kageyama, Koji

2010-10-20

Pythium intermedium is known to play an important role in the carbon cycling of cool-temperate forest soils. In this study, a fast, precise and effective real-time PCR technique for estimating the population densities of P. intermedium from soils was developed using species-specific primers. Specificity was confirmed both with conventional PCR and real-time PCR. The detection limit (sensitivity) was determined and amplification standard curves were generated using SYBR Green II fluorescent dye. A rapid and accurate assay for quantification of P. intermedium in Takayama forest soils of Japan was developed using a combination of a new DNA extraction method and PCR primers were developed for real-time PCR. And the distribution of P. intermedium in forest soil was investigated with both soil plating method and the developed real-time PCR technique. This new technique will be a useful tool and can be applied to practical use for studying the role of Pythium species in forest and agricultural ecosystems. Copyright © 2009 Elsevier GmbH. All rights reserved.

Enhanced degradation of spiro-insecticides and their leacher enol derivatives in soil by solarization and biosolarization techniques.

PubMed

Fenoll, José; Garrido, Isabel; Vela, Nuria; Ros, Caridad; Navarro, Simón

2017-04-01

The leaching potential of three insecticides (spirodiclofen, spiromesifen, and spirotetramat) was assessed using disturbed soil columns. Small quantities of spirodiclofen and spiromesifen were detected in leachate fraction, while spirotetramat residues were not found in the leachates. In addition, the transformation products (enol derivatives) are relatively more mobile than the parent compounds and may leach into groundwater. Moreover, the use of disinfection soil techniques (solarization and biosolarization) to enhance their degradation rates in soil was investigated. The results show that both practices achieved a reduction in the number of juvenile nematodes, enhancing in a parallel way degradation rates of the insecticides and their enol derivatives as compared with the non-disinfected soil. This behavior can be mainly attributed to the increase in soil temperature and changes in microbial activity. All insecticides showed similar behavior under solarization and biosolarization conditions. As a consequence, both agronomic techniques could be considered as suitable strategies for detoxification of soils polluted with the studied pesticides.

A novel method for tracing the movement of multiple individual soil particles under rainfall conditions using florescent videography.

NASA Astrophysics Data System (ADS)

Hardy, Robert; Pates, Jackie; Quinton, John

2016-04-01

The importance of developing new techniques to study soil movement cannot be underestimated especially those that integrate new technology. Currently there are limited empirical data available about the movement of individual soil particles, particularly high quality time-resolved data. Here we present a new technique which allows multiple individual soil particles to be traced in real time under simulated rainfall conditions. The technique utilises fluorescent videography in combination with a fluorescent soil tracer, which is based on natural particles. The system has been successfully used on particles greater than ~130 micrometres diameter. The technique uses HD video shot at 50 frames per second, providing extremely high temporal (0.02 s) and spatial resolution (sub-millimetre) of a particle's location without the need to perturb the system. Once the tracer has been filmed then the images are processed and analysed using a particle analysis and visualisation toolkit written in python. The toolkit enables the creation of 2 and 3-D time-resolved graphs showing the location of 1 or more particles. Quantitative numerical analysis of a pathway (or collection of pathways) is also possible, allowing parameters such as particle speed and displacement to be assessed. Filming the particles removes the need to destructively sample material and has many side-benefits, reducing the time, money and effort expended in the collection, transport and laboratory analysis of soils, while delivering data in a digital form which is perfect for modern computer-driven analysis techniques. There are many potential applications for the technique. High resolution empirical data on how soil particles move could be used to create, parameterise and evaluate soil movement models, particularly those that use the movement of individual particles. As data can be collected while rainfall is occurring it may offer the ability to study systems under dynamic conditions(rather than rainfall of a constant intensity), which are more realistic and this was one motivations behind the development of this technique.

Re-membering the body: applications of computational neuroscience to the top-down control of regeneration of limbs and other complex organs.

PubMed

Pezzulo, G; Levin, M

2015-12-01

A major goal of regenerative medicine and bioengineering is the regeneration of complex organs, such as limbs, and the capability to create artificial constructs (so-called biobots) with defined morphologies and robust self-repair capabilities. Developmental biology presents remarkable examples of systems that self-assemble and regenerate complex structures toward their correct shape despite significant perturbations. A fundamental challenge is to translate progress in molecular genetics into control of large-scale organismal anatomy, and the field is still searching for an appropriate theoretical paradigm for facilitating control of pattern homeostasis. However, computational neuroscience provides many examples in which cell networks - brains - store memories (e.g., of geometric configurations, rules, and patterns) and coordinate their activity towards proximal and distant goals. In this Perspective, we propose that programming large-scale morphogenesis requires exploiting the information processing by which cellular structures work toward specific shapes. In non-neural cells, as in the brain, bioelectric signaling implements information processing, decision-making, and memory in regulating pattern and its remodeling. Thus, approaches used in computational neuroscience to understand goal-seeking neural systems offer a toolbox of techniques to model and control regenerative pattern formation. Here, we review recent data on developmental bioelectricity as a regulator of patterning, and propose that target morphology could be encoded within tissues as a kind of memory, using the same molecular mechanisms and algorithms so successfully exploited by the brain. We highlight the next steps of an unconventional research program, which may allow top-down control of growth and form for numerous applications in regenerative medicine and synthetic bioengineering.

Recent development and biomedical applications of self-healing hydrogels.

PubMed

Wang, Yinan; Adokoh, Christian K; Narain, Ravin

2018-01-01

Hydrogels are of special importance, owing to their high-water content and various applications in biomedical and bio-engineering research. Self-healing properties is a common phenomenon in living organisms. Their endowed property of being able to self-repair after physical/chemical/mechanical damage to fully or partially its original properties demonstrates their prospective therapeutic applications. Due to complicated preparation and selection of suitable materials, the application of many host-guest supramolecular polymeric hydrogels are so limited. Thus, the design and construction of self-repairing material are highly desirable for effectively increase in the lifetime of a functional material. However, recent advances in the field of materials science and bioengineering and nanotechnology have led to the design of biologically relevant self-healing hydrogels for therapeutic applications. This review focuses on the recent development of self-healing hydrogels for biomedical application. Areas covered: The strategies of making self-healing hydrogels and their healing mechanisms are discussed. The significance of self-healing hydrogel for biomedical application is also highlighted in areas such as 3D/4D printing, cell/drug delivery, as well as soft actuators. Expert opinion: Materials that have the ability to self-repair damage and regain the desired mechanical properties, have been found to be excellent candidate materials for a range of biomedical uses especially if their unique characteristics are similar to that of soft-tissues. Self-healing hydrogels have been synthesized and shown to exhibit similar characteristics as human tissues, however, significant improvement is required in the fabrication process from inexpensive and nontoxic/non-hazardous materials and techniques, and, in addition, further fine-tuning of the self-healing properties are needed for specific biomedical uses.

Enzymatic regulation of functional vascular networks using gelatin hydrogels

PubMed Central

Chuang, Chia-Hui; Lin, Ruei-Zeng; Tien, Han-Wen; Chu, Ya-Chun; Li, Yen-Cheng; Melero-Martin, Juan M.; Chen, Ying-Chieh

2015-01-01

To manufacture tissue engineering-based functional tissues, scaffold materials that can be sufficiently vascularized to mimic the functionality and complexity of native tissues are needed. Currently, vascular network bioengineering is largely carried out using natural hydrogels as embedding scaffolds, but most natural hydrogels have poor mechanical stability and durability, factors that critically limit their widespread use. In this study, we examined the suitability of gelatin-phenolic hydroxyl (gelatin-Ph) hydrogels that can be enzymatically crosslinked, allowing tuning of the storage modulus and the proteolytic degradation rate, for use as injectable hydrogels to support the human progenitor cell-based formation of a stable and mature vascular network. Porcine gelatin-Ph hydrogels were found to be cytocompatible with human blood-derived endothelial colony-forming cells and white adipose tissue-derived mesenchymal stem cells, resulting in >87% viability, and cell proliferation and spreading could be modulated by using hydrogels with different proteolytic degradability and stiffness. In addition, gelatin was extracted from mouse dermis and murine gelatin-Ph hydrogels were prepared. Importantly, implantation of human cell-laden porcine or murine gelatin-Ph hydrogels into immunodeficient mice resulted in the rapid formation of functional anastomoses between the bioengineered human vascular network and the mouse vasculature. Furthermore, the degree of enzymatic crosslinking of the gelatin-Ph hydrogels could be used to modulate cell behavior and the extent of vascular network formation in vivo. Our report details a technique for the synthesis of gelatin-Ph hydrogels from allogeneic or xenogeneic dermal skin and suggests that these hydrogels can be used for biomedical applications that require the formation of microvascular networks, including the development of complex engineered tissues. PMID:25749296

Site-specific antibody-liposome conjugation through copper-free click chemistry: a molecular biology approach for targeted photodynamic therapy (Conference Presentation)

NASA Astrophysics Data System (ADS)

Obaid, Girgis; Wang, Yucheng; Kuriakose, Jerrin; Broekgaarden, Mans; Alkhateeb, Ahmed; Bulin, Anne-Laure; Hui, James; Tsourkas, Andrew; Hasan, Tayyaba

2016-03-01

Nanocarriers, such as liposomes, have the ability to potentiate photodynamic therapy (PDT) treatment regimens by the encapsulation of high payloads of photosensitizers and enhance their passive delivery to tumors through the enhanced permeability and retention effect. By conjugating targeting moieties to the surface of the liposomal nanoconstructs, cellular selectivity is imparted on them and PDT-based therapies can be performed with significantly higher dose tolerances, as off-target toxicity is simultaneously reduced.1 However, the maximal benefits of conventional targeted nanocarriers, including liposomes, are hindered by practical limitations including chemical instability, non-selective conjugation chemistry, poor control over ligand orientation, and loss of ligand functionality following conjugation, amongst others.2 We have developed a robust, physically and chemically stable liposomal nanoplatform containing benzoporphyrin derivative photosensitizer molecules within the phospholipid bilayer and an optimized surface density of strained cyclooctyne moieties for `click' conjugation to azido-functionalized antibodies.3 The clinical chimeric anti-EGFR antibody Cetuximab is site-specifically photocrosslinked to a recombinant bioengineered that recognizes the antibody's Fc region, containing a terminal azide.4 The copper-free click conjugation of the bioengineered Cetuximab derivative to the optimized photosensitizing liposome provides exceptional control over the antibody's optimal orientation for cellular antigen binding. Importantly, the reaction occurs rapidly under physiological conditions, bioorthogonally (selectively in the presence of other biomolecules) and without the need for toxic copper catalysis.3 Such state-of-the-art conjugation strategies push the boundaries of targeted photodynamic therapy beyond the limitations of traditional chemical coupling techniques to produce more robust and effective targeted therapeutics with applications beyond conventional treatments.

Soil gas screening for chlorinated solvents at three contaminated karst sites in Tennessee

USGS Publications Warehouse

Wolfe, W.J.; Williams, S.D.

2002-01-01

Soil gas was sampled using active sampling techniques and passive collectors at three sites in Tennessee to evaluate the effectiveness of these techniques for locating chlorinated solvent sources and flowpaths in karst aquifers. Actively collected soil gas samples were analyzed in the field with a portable gas chromatograph, and the passive soil gas collectors were analyzed in the lab with gas chromatography/mass spectrometry. Results of the sampling indicate that the effectiveness of both techniques is highly dependent on the distribution of the contaminants in the subsurface, the geomorphic and hydrogeologic characteristics of the site, and, in one case, on seasonal conditions. Both active and passive techniques identified areas of elevated subsurface chlorinated solvent concentrations at a landfill site where contamination remains concentrated in the regolith. Neither technique detected chlorinated solvents known to be moving in the bedrock at a manufacturing site characterized by thick regolith and an absence of surficial karst features. Passive soil gas sampling had varied success detecting flowpaths for chloroform in the bedrock at a train derailment site characterized by shallow regolith and abundant surficial karst features. At the train derailment site, delineation of the contaminant flowpath through passive soil gas sampling was stronger and more detailed under Winter conditions than summer.

Remote sensing techniques for the detection of soil erosion and the identification of soil conservation practices

NASA Technical Reports Server (NTRS)

Pelletier, R. E.; Griffin, R. H.

1985-01-01

The following paper is a summary of a number of techniques initiated under the AgRISTARS (Agriculture and Resources Inventory Surveys Through Aerospace Remote Sensing) project for the detection of soil degradation caused by water erosion and the identification of soil conservation practices for resource inventories. Discussed are methods to utilize a geographic information system to determine potential soil erosion through a USLE (Universal Soil Loss Equation) model; application of the Kauth-Thomas Transform to detect present erosional status; and the identification of conservation practices through visual interpretation and a variety of enhancement procedures applied to digital remotely sensed data.

Extraction Techniques for Polycyclic Aromatic Hydrocarbons in Soils

PubMed Central

Lau, E. V.; Gan, S.; Ng, H. K.

2010-01-01

This paper aims to provide a review of the analytical extraction techniques for polycyclic aromatic hydrocarbons (PAHs) in soils. The extraction technologies described here include Soxhlet extraction, ultrasonic and mechanical agitation, accelerated solvent extraction, supercritical and subcritical fluid extraction, microwave-assisted extraction, solid phase extraction and microextraction, thermal desorption and flash pyrolysis, as well as fluidised-bed extraction. The influencing factors in the extraction of PAHs from soil such as temperature, type of solvent, soil moisture, and other soil characteristics are also discussed. The paper concludes with a review of the models used to describe the kinetics of PAH desorption from soils during solvent extraction. PMID:20396670

Tests on the centrifugal flotation technique and its use in estimating the prevalence of Toxocara in soil samples from urban and suburban areas of Malaysia.

PubMed

Loh, A G; Israf, D A

1998-03-01

The influence of soil texture (silt, sand and laterite) and flotation solutions (saturated NaCl, sucrose, NaNO3, and ZnSO4) upon the recovery of Toxocara ova from seeded soil samples with the centrifugal flotation technique was investigated. Soil samples of different texture were artificially seeded with Toxocara spp. ova and subjected to a centrifugal flotation technique which used various flotation solutions. The results showed significant (P < 0.001) interactions between the soil types and the flotation solutions. The highest percentage of ova recovery was obtained with silty soil (34.9-100.8%) with saturated NaCl as the flotation solution (45.3-100.8%). A combination of washing of soil samples with 0.1% Tween 80, and flotation using saturated NaCl and a 30 min coverslip recovery period was used to study the prevalence of contamination of soil samples. Forty-six soil samples were collected from up to 24 public parks/playgrounds in urban areas of Petaling Jaya and suburban areas of Serdang. The prevalence of Toxocara species in the urban and suburban areas was 54.5% and 45.8% respectively.

Detection techniques using multispectral data to index soil erosional status

NASA Technical Reports Server (NTRS)

Pelletier, R. E.

1988-01-01

Indexing techniques that can be used to detect soil erosion utilizing the known band widths of the Landsat MSS and TM sensors are identified. The indexing techniques focus on iron oxides, clays, and organic matter as properties revealing soil erosional status. For data aquisition, a Collins visible and infrared intelligent spectrometer was used to collect data from 0.4-24 microns. Pressed polytetrafluorethylene was used as the reflectance standard and was aquired at the same time that the sample data were aquired.

Relationship between metal speciation in soil solution and metal adsorption at the root surface of ryegrass.

PubMed

Kalis, Erwin J J; Temminghoff, Erwin J M; Town, Raewyn M; Unsworth, Emily R; van Riemsdijk, Willem H

2008-01-01

The total metal content of the soil or total metal concentration in the soil solution is not always a good indicator for metal availability to plants. Therefore, several speciation techniques have been developed that measure a defined fraction of the total metal concentration in the soil solution. In this study the Donnan Membrane Technique (DMT) was used to measure free metal ion concentrations in CaCl(2) extractions (to mimic the soil solution, and to work under standardized conditions) of 10 different soils, whereas diffusive gradients in thin-films (DGT) and scanning chronopotentiometry (SCP) were used to measure the sum of free and labile metal concentrations in the CaCl(2) extracts. The DGT device was also exposed directly to the (wetted) soil (soil-DGT). The metal concentrations measured with the speciation techniques are related to the metal adsorption at the root surface of ryegrass (Lolium perenne L.), to be able to subsequently predict metal uptake. In most cases the metal adsorption related pH-dependently to the metal concentrations measured by DMT, SCP, and DGT in the CaCl(2) extract. However, the relationship between metal adsorption at the root surface and the metal concentrations measured by the soil-DGT was not-or only slightly-pH dependent. The correlations between metal adsorption at the root surface and metal speciation detected by different speciation techniques allow discussion about rate limiting steps in biouptake and the contribution of metal complexes to metal bioavailability.

New Directions for Biomedical Engineering

ERIC Educational Resources Information Center

Plonsey, Robert

1973-01-01

Discusses the definition of "biomedical engineering" and the development of educational programs in the field. Includes detailed descriptions of the roles of bioengineers, medical engineers, and chemical engineers. (CC)

Measuring soil moisture with imaging radars

NASA Technical Reports Server (NTRS)

Dubois, Pascale C.; Vanzyl, Jakob; Engman, Ted

1995-01-01

An empirical model was developed to infer soil moisture and surface roughness from radar data. The accuracy of the inversion technique is assessed by comparing soil moisture obtained with the inversion technique to in situ measurements. The effect of vegetation on the inversion is studied and a method to eliminate the areas where vegetation impairs the algorithm is described.

Nickel and manganese transfer from soil to plant in lateritic mining soils from New Caledonia

NASA Astrophysics Data System (ADS)

Pouschat, P.; Rose, J.; Alliot, I.; Dominici, C.; Keller, C.; Laffont-Schwob, I.; Olivi, L.; Ambrosi, J.-P.

2009-04-01

New Caledonian ferritic soils (more than 50 % of iron) are naturally rich in metals (chromium, nickel, cobalt, and manganese), deficient in major nutrients (nitrogen, phosphorous, and potassium), and unbalanced for the calcium/magnesium ratio. Under these particular ecological conditions, New Caledonia, recognized as a hot-spot of biodiversity, is a natural laboratory to study and understand the adaptation strategies of plants to metalliferous soils, and particularly the tolerance and (hyper)accumulation of metals by plants. Moreover, understanding such mechanisms is essential to develop rehabilitation or phytoremediation techniques for polluted soils, as well as phytomining techniques. Thus, in order to understand the soil - plant relationship and metal mobility along a toposequence in a future nickel mining massif, field experiments were conducted in an isolated ultramafic massif of New Caledonia. Several plant species of two endemic and frequent plant genera were chosen: Tristaniopsis guillainii and T. calobuxus (Myrtaceae), and Phyllanthus serpentinus and P. favieri (Euphorbiaceae), because of their nickel and/or manganese accumulating or hyperaccumulating nature. Leaves, twigs, and roots of all plants were collected along the soil sequence and their associated rhizospheric and bulk soils were sampled. Next, a series of characterization techniques were adapted and then coupled to cryogenics. The combined use of those multiple techniques (cryo-microtomy, cryo-SEM, µXRF, cryo-XAS, and soil characterization) allowed to study co-location and speciation of nickel and manganese in the different plant organs and soils (rhizospheric and bulk). Bioaccumulated nickel and manganese had different distribution patterns. In leaves, Ni accumulated in non photosynthetic tissues (e.g. epidermis) whereas Mn preferentially accumulated in mesophyll whatever the plant species. Nevertheless, in spite of a different speciation in soils, nickel and manganese were both found as similar divalent organometallic complexes in the different plant parts.

Mapping patterns of soil properties and soil moisture using electromagnetic induction to investigate the impact of land use changes on soil processes

NASA Astrophysics Data System (ADS)

Robinet, Jérémy; von Hebel, Christian; van der Kruk, Jan; Govers, Gerard; Vanderborght, Jan

2016-04-01

As highlighted by many authors, classical or geophysical techniques for measuring soil moisture such as destructive soil sampling, neutron probes or Time Domain Reflectometry (TDR) have some major drawbacks. Among other things, they provide point scale information, are often intrusive and time-consuming. ElectroMagnetic Induction (EMI) instruments are often cited as a promising alternative hydrogeophysical methods providing more efficiently soil moisture measurements ranging from hillslope to catchment scale. The overall objective of our research project is to investigate whether a combination of geophysical techniques at various scales can be used to study the impact of land use change on temporal and spatial variations of soil moisture and soil properties. In our work, apparent electrical conductivity (ECa) patterns are obtained with an EM multiconfiguration system. Depth profiles of ECa were subsequently inferred through a calibration-inversion procedure based on TDR data. The obtained spatial patterns of these profiles were linked to soil profile and soil water content distributions. Two catchments with contrasting land use (agriculture vs. natural forest) were selected in a subtropical region in the south of Brazil. On selected slopes within the catchments, combined EMI and TDR measurements were carried out simultaneously, under different atmospheric and soil moisture conditions. Ground-truth data for soil properties were obtained through soil sampling and auger profiles. The comparison of these data provided information about the potential of the EMI technique to deliver qualitative and quantitative information about the variability of soil moisture and soil properties.

Activated carbon amendment for in-situ remediation

NASA Astrophysics Data System (ADS)

Elmquist, M.; Brändli, R.; Henriksen, T.; Hartnik, T.; Cornelissen, G.

2009-04-01

For the first time in Europe, a novel and innovative remediation technique is used in a field pilot study. This technique is amendment of the soil with two types of activated carbon (AC). Here, one pulverized AC (PAC, 50% < 15µm and 3% >150 µm) and one granular AC (GAC, 1.7-0.43 mm) is tested. The idea of this technique is that the added AC binds organic contaminants so strongly that they cannot be taken up in living organisms or transported to other environmental compartments. Laboratory studies with 2% (wt %) AC amendment to an urban soil reduced the freely dissolved pore water concentrations of PAH by 17% to 99% (Brändli et al. 2008). Several parameters such as dissolved organic carbon (DOC), K, NO2, NO3, NH4, PO4 and PAH, are being measured in this field study. Plant growth and earthworm bioaccumulation tests were also carried out during the summer months. DOC showed a 70% reduction between untreated soil and soil with PAC about one year after the amendment. In the soil mixed with GAC, a 55% reduction could be measured. For K, a 40% lowering value was observed for the soil with GAC compared to no affect for the soil with PAC. NH4 was reduced by 50% for both GAC and PAC amended soils compared to the untreated soil, whereas NO2 and NO3 increased with 2-4 times for the soil with GAC and no effect were seen for the soil with PAC. The freely dissolved PAH concentrations were reduced by 49-78% for the soil with GAC and 82-96% for the soil with PAC. The plant experiment showed best growth rate in the soil with GAC, followed by the untreated soil and least growth was measured on the PAC treated soil. The low growth rate seen in the soil with PAC may come from the fact that DOC and some other nutrients are also being sorbed to the PAC surface together with the organic pollutants and are thereby taken away from the biological cycle. Amendment of soil with AC remediates the soil from organic contaminants when these pollutants are sorbed to the AC surface. This is an easy technique that can be performed to a relatively low cost. However, the AC particles may also sorb other constituents of the effluent water such as DOC and nutrients which in turn may lead to reduced plant growth rate. Therefore, the long-term effects of this amendment technique have to be studied more closely. Reference Rahel C. Brändli, Thomas Hartnik, Thomas Henriksen, Gerard Cornelissen, (2008) Sorption of native polyaromatic hydrocarbons (PAH) to black carbon and amended activated carbon in soil, Chemosphere doi:10.1016/j.chemosphere.2008.08.034

New Phase of Growth for Xenogeneic-Based Bioartificial Organs

PubMed Central

Pitkin, Zorina

2016-01-01

In this article, we examine the advanced clinical development of bioartificial organs and describe the challenges to implementing such systems into patient care. The case for bioartificial organs is evident: they are meant to reduce patient morbidity and mortality caused by the persistent shortage of organs available for allotransplantation. The widespread introduction and adoption of bioengineered organs, incorporating cells and tissues derived from either human or animal sources, would help address this shortage. Despite the decades of development, the variety of organs studied and bioengineered, and continuous progress in the field, only two bioengineered systems are currently commercially available: Apligraf® and Dermagraft® are both approved by the FDA to treat diabetic foot ulcers, and Apligraf® is approved to treat venous leg ulcers. Currently, no products based on xenotransplantation have been approved by the FDA. Risk factors include immunological barriers and the potential infectivity of porcine endogenous retrovirus (PERV), which is unique to xenotransplantation. Recent breakthroughs in gene editing may, however, mitigate risks related to PERV. Because of its primary role in interrupting progress in xenotransplantation, we present a risk assessment for PERV infection, and conclude that the formerly high risk has been reduced to a moderate level. Advances in gene editing, and more broadly in the field, may make it more likely than ever before that bioartificial organs will alleviate the suffering of patients with organ failure. PMID:27657057

Advances in Biomedical Imaging, Bioengineering, and Related Technologies for the Development of Biomarkers of Pancreatic Disease: Summary of a National Institute of Diabetes and Digestive and Kidney Diseases and National Institute of Biomedical Imaging and Bioengineering Workshop

PubMed Central

Kelly, Kimberly A.; Hollingsworth, Michael A.; Brand, Randall E.; Liu, Christina H.; Singh, Vikesh K.; Srivastava, Sudhir; Wasan, Ajay D.; Yadav, Dhiraj; Andersen, Dana K.

2015-01-01

A workshop sponsored by the National Institute of Diabetes and Digestive and Kidney Diseases and the National Institute of Biomedical Imaging and Bioengineering focused on research gaps and opportunities in the development of new biomarkers of pancreatic disease. The session was held on July 22, 2015, and structured into six sessions: 1) introduction and overview, 2) keynote address, 3) new approaches to the diagnosis of chronic pancreatitis, 4) biomarkers of pain and inflammation, 5) new approaches to the detection of pancreatic cancer, and 6) shed exosomes, shed cells, and shed proteins. Recent advances in the fields of pancreatic imaging, functional markers of pancreatic disease, proteomics, molecular and cellular imaging, and detection of circulating cancer cells and exosomes were reviewed. Knowledge gaps and research needs were highlighted. The development of new methods for the non-invasive determination of pancreatic pathology, the use of cellular markers of pancreatic function, inflammation, pain, and malignancy, and the refinement of methods to identify cells and cellular constituents of pancreatic cancer were discussed. The further refinement of sophisticated technical methods, and the need for clinical studies to validate these new approaches in large-scale studies of patients at risk for the development of pancreatic disease was repeatedly emphasized. PMID:26465948

Human immature dental pulp stem cells (hIDPSCs), their application to cell therapy and bioengineering: an analysis by systematic revision of the last decade of literature.

PubMed

de Souza, Priscilla Vianna; Alves, Fabiana Bucholdz Teixeira; Costa Ayub, Cristina Lucia Sant'Ana; de Miranda Soares, Maria Albertina; Gomes, Jose Rosa

2013-12-01

During recent years, attention has been given to the potential of therapeutic approaches using stem cells obtained from dental pulp tissue. The aim of this study, therefore, was to give an overview of the papers produced during the last 10 years that have described the use of stem cells obtained from human deciduous teeth in cell therapy or bioengineering. The PubMed database was investigated from January 2002 until July 2011 and the papers published during this period were analyzed according to criteria previously established, using the methodology of systematic review. The measurements were done using "stem cell" as the primary keyword, and "human deciduous teeth dental pulp cell" and "human exfoliated deciduous teeth" as the secondary keywords. Four hundred and seventy-five papers were found. The first screening resulted in 276 papers, from which 84 papers were selected. However, only 11 of them attained the aim proposed in our approach. There were few scientific studies related to direct therapeutic application using stem cells of human deciduous teeth and none of them had been applied to humans. However, the results indicated important and promising applications of the pulp stem-cells in cell therapy and bioengineering as demonstrated by studies in animal models of muscular dystrophy, Parkison's disease, and lupus erythematosus. Copyright © 2013 Wiley Periodicals, Inc.

Recent Advances in 3D Printing of Aliphatic Polyesters

PubMed Central

Frone, Adriana Nicoleta; Brandabur, Călin

2017-01-01

3D printing represents a valuable alternative to traditional processing methods, clearly demonstrated by the promising results obtained in the manufacture of various products, such as scaffolds for regenerative medicine, artificial tissues and organs, electronics, components for the automotive industry, art objects and so on. This revolutionary technique showed unique capabilities for fabricating complex structures, with precisely controlled physical characteristics, facile tunable mechanical properties, biological functionality and easily customizable architecture. In this paper, we provide an overview of the main 3D-printing technologies currently employed in the case of poly (lactic acid) (PLA) and polyhydroxyalkanoates (PHA), two of the most important classes of thermoplastic aliphatic polyesters. Moreover, a short presentation of the main 3D-printing methods is briefly discussed. Both PLA and PHA, in the form of filaments or powder, proved to be suitable for the fabrication of artificial tissue or scaffolds for bone regeneration. The processability of PLA and PHB blends and composites fabricated through different 3D-printing techniques, their final characteristics and targeted applications in bioengineering are thoroughly reviewed. PMID:29295559

Cell-based cartilage repair strategies in the horse.

PubMed

Ortved, Kyla F; Nixon, Alan J

2016-02-01

Damage to the articular cartilage surface is common in the equine athlete and, due to the poor intrinsic healing capabilities of cartilage, can lead to osteoarthritis (OA). Joint disease and OA are the leading cause of retirement in equine athletes and currently there are no effective treatments to stop the progression of OA. Several different cell-based strategies have been investigated to bolster the weak regenerative response of chondrocytes. Such techniques aim to restore the articular surface and prevent further joint degradation. Cell-based cartilage repair strategies include enhancement of endogenous repair mechanisms by recruitment of stem cells from the bone marrow following perforation of the subchondral bone plate; osteochondral implantation; implantation of chondrocytes that are maintained in defects by either a membrane cover or scaffold, and transplantation of mesenchymal stem cells into cartilage lesions. More recently, bioengineered cartilage and scaffoldless cartilage have been investigated for enhancing repair. This review article focuses on the multitude of cell-based repair techniques for cartilage repair across several species, with special attention paid to the horse. Copyright © 2015 Elsevier Ltd. All rights reserved.

Short-term effect of aniline on soil microbial activity: a combined study by isothermal microcalorimetry, glucose analysis, and enzyme assay techniques.

PubMed

Chen, Huilun; Zhuang, Rensheng; Yao, Jun; Wang, Fei; Qian, Yiguang; Masakorala, Kanaji; Cai, Minmin; Liu, Haijun

2014-01-01

The accidents of aniline spill and explosion happened almost every year in China, whereas the toxic effect of aniline on soil microbial activity remained largely unexplored. In this study, isothermal microcalorimetric technique, glucose analysis, and soil enzyme assay techniques were employed to investigate the toxic effect of aniline on microbial activity in Chinese soil for the first time. Soil samples were treated with aniline from 0 to 2.5 mg/g soil to tie in with the fact of aniline spill. Results from microcalorimetric analysis showed that the introduction of aniline had a significant adverse effect on soil microbial activity at the exposure concentrations ≥0.4 mg/g soil (p < 0.05) and ≥0.8 mg/g soil (p < 0.01), and the activity was totally inhibited when the concentration increased to 2.5 mg/g soil. The glucose analysis indicated that aniline significantly decreased the soil microbial respiratory activity at the concentrations ≥0.8 mg/g soil (p < 0.05) and ≥1.5 mg/g soil (p < 0.01). Soil enzyme activities for β-glucosidase, urease, acid-phosphatase, and dehydrogenase revealed that aniline had a significant effect (p < 0.05) on the nutrient cycling of C, N, and P as well as the oxidative capacity of soil microorganisms, respectively. All of these results showed an intensively toxic effect of aniline on soil microbial activity. The proposed methods can provide toxicological information of aniline to soil microbes from the metabolic and biochemical point of views which are consistent with and correlated to each other.

Biology: An Important Agricultural Engineering Mechanism

ERIC Educational Resources Information Center

Henderson, S. M.

1974-01-01

Describes the field of bioengineering with particular emphasis on agricultural engineering, and presents the results of a survey of schools that combine biology and engineering in their curricula. (JR)

In vivo monitoring of distributional transport kinetics and extravasation of quantum dots in living rat liver

NASA Astrophysics Data System (ADS)

Su, Cheng-Kuan; Sun, Yuh-Chang

2013-04-01

Although the unique optical properties of surface-modified quantum dots (QDs) have attracted wide interest in molecular biology and bioengineering, there are very few reports of their in vivo biodistribution, due to a lack of analytical techniques for characterizing the dynamic variation of QDs in living animals. In this study, we used an in vivo online monitoring system and a batch-wise elemental analytical method to investigate the biodistribution/extravasation of various surface-modified CdTeSe/ZnS (QDs) in rat liver. It is found that the surface modification dictated not only the blood retention profile but also the degree of extravasation and the clearance of extracellular QDs, making it an important variable for regulating the transfer and exchange process of QDs among three physiological compartments—bloodstream, extracellular space and Kupffer cells/hepatocytes.

3D Printing Variable Stiffness Foams Using Viscous Thread Instability

NASA Astrophysics Data System (ADS)

Lipton, Jeffrey I.; Lipson, Hod

2016-08-01

Additive manufacturing of cellular structures has numerous applications ranging from fabrication of biological scaffolds and medical implants, to mechanical weight reduction and control over mechanical properties. Various additive manufacturing processes have been used to produce open regular cellular structures limited only by the resolution of the printer. These efforts have focused on printing explicitly designed cells or explicitly planning offsets between strands. Here we describe a technique for producing cellular structures implicitly by inducing viscous thread instability when extruding material. This process allows us to produce complex cellular structures at a scale that is finer than the native resolution of the printer. We demonstrate tunable effective elastic modulus and density that span two orders of magnitude. Fine grained cellular structures allow for fabrication of foams for use in a wide range of fields ranging from bioengineering, to robotics to food printing.

Feasibility of electrokinetic oxygen supply for soil bioremediation purposes.

PubMed

Mena Ramírez, E; Villaseñor Camacho, J; Rodrigo Rodrigo, M A; Cañizares Cañizares, P

2014-12-01

This paper studies the possibility of providing oxygen to a soil by an electrokinetic technique, so that the method could be used in future aerobic polluted soil bioremediation treatments. The oxygen was generated from the anodic reaction of water electrolysis and transported to the soil in a laboratory-scale electrokinetic cell. Two variables were tested: the soil texture and the voltage gradient. The technique was tested in two artificial soils (clay and sand) and later in a real silty soil, and three voltage gradients were used: 0.0 (control), 0.5, and 1.0 V cm(-1). It was observed that these two variables strongly influenced the results. Oxygen transport into the soil was only available in the silty and sandy soils by oxygen diffusion, obtaining high dissolved oxygen concentrations, between 4 and 9 mg L(-1), useful for possible aerobic biodegradation processes, while transport was not possible in fine-grained soils such as clay. Electro-osmotic flow did not contribute to the transport of oxygen, and an increase in voltage gradients produced higher oxygen transfer rates. However, only a minimum fraction of the electrolytically generated oxygen was efficiently used, and the maximum oxygen transport rate observed, approximately 1.4 mgO2 L(-1)d(-1), was rather low, so this technique could be only tested in slow in-situ biostimulation processes for organics removal from polluted soils. Copyright © 2014 Elsevier Ltd. All rights reserved.

Biogeosystem technique as a method to overcome the Biological and Environmental Hazards of modern Agricultural, Irrigational and Technological Activities

NASA Astrophysics Data System (ADS)

Kalinitchenko, Valery; Batukaev, Abdulmalik; Zinchenko, Vladimir; Zarmaev, Ali; Magomadov, Ali; Chernenko, Vladimir; Startsev, Viktor; Bakoev, Serojdin; Dikaev, Zaurbek

2014-05-01

Modern challenge for humanity is to replace the paradigm of nature use and overcome environmental hazards of agronomy, irrigation, industry, and other human activities in biosphere. It is utterly reasonable to stop dividing biosphere on shares - the human habitat and the environment. In the 21st century it is an outdated anthropocentrism. Contradicting himself to biosphere Humankind has the problems. The new paradigm of biosphere control by methods of Biogeosystem technique is on agenda of Humankind. Key directions of Biogeosystem technique. Tillage. Single rotary milling 20…30-50…60 sm soil layer optimizes the evolution and environment of soil, creates a favorable conditions for the rhizosphere, increases the biological productivity of biosphere by 30-50% compared to the standard agricultural practices for the period up to 40 years. Recycle material. Recycling of mineral and organic substances in soil layer of 20…30-50…60 sm in rotary milling soil processing provides wastes clean return to biosphere. Direct intrasoil substances synthesis. Environmentally friendly robot wasteless nanotechnology provides direct substances synthesis, including fertilizers, inside the soil. It eliminates the prerequisites of the wastes formation under standard industrial technologies. Selective substance's extraction from soil. Electrochemical robotic nanotechnology provides selective substances extraction from soil. The technology provides recovery, collection and subsequent safe industrial use of extracted substances out of landscape. Saving fresh water. An important task is to save fresh water in biosphere. Irrigation spends water 4-5 times more of biological requirements of plants, leads to degradation of soil and landscape. The intrasoil pulse continuous-discrete paradigm of irrigation is proposed. It provides the soil and landscape conservation, increases the biological productivity, save the fresh water up to 10-20 times. The subsurface soil rotary processing and intrasoil pulsed continuous-discrete irrigation provide environmentally safe disposal of municipal, industrial, biological and agricultural wastes. Hazardous chemical and biological agents are under the soil surface. It provided a medical and veterinary safety of environment. Biogeosystem technic controls the equilibria in the soil and soil solution, prevents excessive mineralization of organic matter in the surface layers of soil. Simultaneously a soil chemical reduction excluded, biological substance do not degrade to gases. Products of organic matter decomposition are directed to the food chain, 100% waste recycling is obtained. Biogeosystems technique allows producing more biological products hence to recycle excessive amount of man-made CO2 and other substances. Biogeosystems technique increases the rate of photosynthesis of the biosphere, the degree of air ionization. This enhances the formation of rains over land, ensures stability of the ionosphere, magnetosphere and atmosphere of Earth. The nowadays technologies allow applying technical solutions based on Biogeosystem technique, there is unique opportunity to accelerate the noosphere new technological platform.

Simple Techniques For Assessing Impacts Of Oil And Gas Operations On Public Lands: A Field Evaluation Of A Photoionization Detector (PID) At A Condensate Release Site, Padre Island National Seashore, Texas

USGS Publications Warehouse

Otton, James K.; Zielinski, Robert A.

2001-01-01

Simple, cost-effective techniques are needed for land managers to assess the environmental impacts of oil and gas production activities on public lands, so that sites may be prioritized for remediation or for further, more formal assessment. Field-portable instruments provide real-time data and allow the field investigator to extend an assessment beyond simply locating and mapping obvious disturbances. Field investigators can examine sites for the presence of hydrocarbons in the subsurface using a soil auger and a photoionization detector (PID). The PID measures volatile organic compounds (VOC) in soil gases. This allows detection of hydrocarbons in the shallow subsurface near areas of obvious oil-stained soils, oil in pits, or dead vegetation. Remnants of a condensate release occur in sandy soils at a production site on the Padre Island National Seashore in south Texas. Dead vegetation had been observed by National Park Service personnel in the release area several years prior to our visit. The site is located several miles south of the Malaquite Beach Campground. In early 2001, we sampled soil gases for VOCs in the area believed to have received the condensate. Our purpose in this investigation was: 1) to establish what sampling techniques might be effective in sandy soils with a shallow water and contrast them with techniques used in an earlier study; and 2) delineate the probable area of condensate release. Our field results show that sealing the auger hole with a clear, rigid plastic tube capped at the top end and sampling the soil gas through a small hole in the cap increases the soil VOC gas signature, compared to sampling soil gases in the bottom of an open hole. This sealed-tube sampling method increases the contrast between the VOC levels within a contaminated area and adjacent background areas. The tube allows the PID air pump to draw soil gas from the volume of soil surrounding the open hole below the tube in a zone less influenced by atmospheric air. In an open hole, the VOC readings seem to be strongly dependent on the degree of diffusion and advection of soil gas VOCs into the open hole from the surrounding soil, a process that may vary with soil and wind conditions. Making measurements with the sealed hole does take some additional time (4-7 minutes after the hole is augered) compared to the open-hole technique (1-2 minutes). We used the rigid-plastic tube technique to survey for soil gas VOCs across the entire site, less than ? acre. Condensate has impacted at least 0.28 acres. The impacted area may extend northwest of the surveyed area.

Assessing the spatial distribution of glyphosate-AMPA in an Argentinian farm field using a pedometric technique

NASA Astrophysics Data System (ADS)

Barbera, Agustin; Zamora, Martin; Domenech, Marisa; Vega-Becerra, Andres; Castro-Franco, Mauricio

2017-04-01

The cultivation of transgenic glyphosate-resistant crops has been the most rapidly adopted crop technology in Argentina since 1997. Thus, more than 180 million liters of the broad-spectrum herbicide glyphosate (N - phosphonomethylglicine) are applied every year. The intensive use of glyphosate combined with geomorphometrical characteristics of the Pampa region is a matter of environmental concern. An integral component of assessing the risk of soil contamination in farm fields is to describe the spatial distribution of the levels of contaminant agent. Application of pedometric techniques for this purpose has been scarcely demonstrated. These techniques could provide an estimate of the concentration at a given unsampled location, as well as the probability that concentration will exceed the critical threshold concentration. In this work, a pedometric technique for assessing the spatial distribution of glyphosate in farm fields was developed. A field located at INTA Barrow, Argentina (Lat: -38.322844, Lon: -60.25572) which has a great soil spatial variability, was divided by soil-specific zones using a pedometric technique. This was developed integrating INTA Soil Survey information and a digital elevation model (DEM) obtained from a DGPS. Firstly, 10 topographic indices derived from a DEM were computed in a Random Forest algorithm to obtain a classification model for soil map units (SMU). Secondly, a classification model was applied to those topographic indices but at a scale higher than 1:1000. Finally, a spatial principal component analysis and a clustering using Fuzzy K-means were used into each SMU. From this clustering, three soil-specific zones were determined which were also validated through apparent electrical conductivity (CEa) measurements. Three soil sample points were determined by zone. In each one, samples from 0-10, 10-20 and 20-40cm depth were taken. Glyphosate content and AMPA in each soil sample were analyzed using de UPLC-MS/MS ESI (+/-). Only AMPA at 10-20 cm depth had significant difference among soil-specific zones. However, marked trends for glyphosate content and AMPA were clearly shown among zones. These results suggest that (i) the presence of glyphosate and AMPA has spatial patterns distribution related to soil properties at field scale; and (ii) the proposed technique allowed to determine soil-specific zones related to the spatial distribution of glyphosate and AMPA fast, cost-effective and accurately. In further works, we would suggest adding new soil information sources to improve soil-specific zone delimitation.

Testing radon mitigation techniques in a pilot house from Băiţa-Ştei radon prone area (Romania).

PubMed

Cosma, Constantin; Papp, Botond; Cucoş Dinu, Alexandra; Sainz, Carlos

2015-02-01

This work presents the implementation and testing of several radon mitigation techniques in a pilot house in the radon prone area of Băiţa-Ştei in NW part of Romania. Radon diagnostic investigations in the pilot house showed that the main source of radon was the building sub-soil and the soil near the house. The applied techniques were based on the depressurization and pressurization of the building sub-soil, on the combination of the soil depressurization system by an electric and an eolian fans. Also, there was made an application of a radon barrier membrane and a testing by the combination of the radon membrane by the soil depressurization system. Finally, the better obtained remedial efficiency was about 85%. Copyright © 2014 Elsevier Ltd. All rights reserved.

15 years in promoting the use of isotopic and nuclear technique for combating land degradation and soil erosion: the contribution of the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture

NASA Astrophysics Data System (ADS)

Mabit, Lionel; Toloza, Arsenio; Heng, Lee

2017-04-01

The world population will exceed 9 billion by the year 2050 and food production will need to be approximately doubled to meet this crucial demand. Most of this increase will occur in developing countries, where the majority of the population depends on agriculture and their land for their livelihoods. Reports from the Intergovernmental Panel on Climate Change (IPCC) predicted negative impact of climate change, threatening global food security. In addition, the intensification of agricultural activities has increased pressure on land and water resources, resulting in different forms of soil degradation, of which soil erosion and associated sedimentation are worsening. Worldwide economic costs of agricultural soil loss and associated sedimentation downstream have been estimated at US 400 billion per year. As a result of climate change, world average soil erosion is expected to further increase significantly. Adapting to climate change requires agricultural soil and water management practices that make agricultural production systems resilient to drought, floods and land degradation, to enhance the conservation of the natural resource base for sustainable upland farming. These current concerns with ensuring sustainable use and management of agroecosystems create an urgent need for reliable quantitative data on the extent and magnitude of soil resource degradation over several spatial and time scales to formulate sound policies and management measures. Integrated isotopic approaches can help in targeting adapted and effective soil-water conservation measures to control soil degradation and therefore contribute to positive feedback mechanisms to mitigate climate change impact on soil and water resources. Set up 60 years ago as the world's centre for cooperation in the nuclear field, the International Atomic Energy Agency (IAEA) promotes the safe, secure and peaceful use of nuclear technologies. Since the end of the 1990s, the Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture has developed research and development activities and capacity building to combat soil degradation (especially soil erosion) and to foster climate smart agriculture. More than 70 FAO/IAEA Member States have benefitted from the technical support and guidance in using fallout radionuclides (FRNs) and Compound-Specific Stable Isotope (CSSI) techniques to trace soil movement and assess soil erosion at different spatial and temporal scales, and to evaluate the effectiveness of soil conservation strategies to ensure sustainable land management. This contribution summarizes the historical background and the latest innovative activities conducted by the Joint FAO/IAEA Division, as well as the main advantages and complementarity of stable and radioisotopic tracers to conventional techniques when investigating land degradation. As examples of the significant role played by the Joint FAO/IAEA Division, two major outcomes achieved in Africa (i.e. Madagascar and Morocco) through the use of isotopic and nuclear techniques will be elaborated. The authors will also report on a new 5-year Co-ordinated Research Project (CRP) funded by the IAEA on "Nuclear Techniques for a Better Understanding of the Impact of Climate Change on Soil Erosion in Upland Agro-ecosystems" which involves key research institutions from 12 participating countries.

COMPARISON OF GEOPROBE PRT AND AMS GVP SOIL-GAS SAMPLING SYSTEMS WITH DEDICATED VAPOR PROBES IN SANDY SOILS AT THE RAYMARK SUPERFUND SITE

EPA Science Inventory

A study was conducted near the Raymark Superfund Site in Stratford, Connecticut to compare results of soil-gas sampling using dedicated vapor probes, a truck-mounted direct-push technique - the Geoprobe Post-Run-Tubing (PRT) system, and a hand-held rotary hammer technique - the A...

Effects of forest road amelioration techniques on soil bulk density, surface runoff, sediment transport, soil moisture and seedling growth

Treesearch

Randy K. Kolka; Mathew F. Smidt

2004-01-01

Although numerous methods have been used to retire roads, new technologies have evolved that can potentially ameliorate soil damage, lessen ,the generation of nonpoint source pollution and increase tree productivity on forest roads. In this study we investigated the effects of three forest road amelioration techniques, subsoiling, recontouring and traditional...

Raising the social yield of research: challenge facing biotechnology.

PubMed

Grimaud, J A

2001-12-01

The biological revolution is the latest in a series of scientific revolutions that have ushered in a new era in physics, chemistry, industry, and composite materials. The latest instruments of life - bioengineering for and by the living - challenge mankind with a number of fundamental questions, while offering an unprecedented series of opportunities. Alternative biotechnologies, biological agriculture for the environment, genomics applied to preventive medicine, genetic engineering are just a few of the benefits mankind may reap from bioengineering. Modern society demands more knowledge, and it is up to public authorities to invest in outreach programs to make public the latest scientific activities and findings. In the case of biotechnologies, it is particularly true that the product of research is not complete until its benefits are returned to society.

Bioengineering towards self-assembly of particulate vaccines.

PubMed

Rehm, Bernd H A

2017-12-01

There is an unmet demand for safe and efficient vaccines for prevention of various infectious diseases. Subunit vaccines comprise selected pathogen specific antigens are a safe alternative to whole organism vaccines. However they often lack immunogenicity. Natural and synthetic self-assembling polymers and proteins will be reviewed in view their use to encapsulate and/or display antigens to serve as immunogenic antigen carriers for induction of protective immunity. Recent advances made in in vivo assembly of antigen-displaying polyester inclusions will be a focus. Particulate vaccines are inherently immunogenic due to enhanced uptake by antigen presenting cells which process antigens mediating adaptive immune responses. Bioengineering approaches enable the design of tailor-made particulate vaccines to fine tune immune responses towards protective immunity. Copyright © 2017 Elsevier Ltd. All rights reserved.

Biomaterials for intervertebral disc regeneration and repair.

PubMed

Bowles, Robert D; Setton, Lori A

2017-06-01

The intervertebral disc contributes to motion, weight bearing, and flexibility of the spine, but is susceptible to damage and morphological changes that contribute to pathology with age and injury. Engineering strategies that rely upon synthetic materials or composite implants that do not interface with the biological components of the disc have not met with widespread use or desirable outcomes in the treatment of intervertebral disc pathology. Here we review bioengineering advances to treat disc disorders, using cell-supplemented materials, or acellular, biologically based materials, that provide opportunity for cell-material interactions and remodeling in the treatment of intervertebral disc disorders. While a field still in early development, bioengineering-based strategies employing novel biomaterials are emerging as promising alternatives for clinical treatment of intervertebral disc disorders. Copyright © 2017 Elsevier Ltd. All rights reserved.

Didactic tools for understanding respiratory physiology

NASA Astrophysics Data System (ADS)

Donnelly Kehoe, P.; Bratovich, C.; Perrone, Ms; Mendez Castells, L.

2007-11-01

The challenges in Bioengineering are not only the application of engineering knowledge to the measurement of physiological variables, but also the simulation of biological systems. Experience has shown that the physiology of the respiratory system involves a set of concepts that cannot be effectively taught without the help of a group of didactic tools that contribute to the measurement of characteristic specific variables and to the simulation of the system itself. This article describes a series of tools designed to optimize the teaching of the respiratory system, including the use of spirometers and software developed entirely by undergraduate Bioengineering students from Universidad Nacional de Entre Rios (UNER). The impact these resources have caused on the understanding of the topic and how each of them has facilitated the interpretation of the concepts by the students is also discussed.

Comparison of in situ DGT measurement with ex situ methods for predicting cadmium bioavailability in soils with combined pollution to biotas.

PubMed

Wang, Peifang; Liu, Cui; Yao, Yu; Wang, Chao; Wang, Teng; Yuan, Ye; Hou, Jun

2017-05-01

To assess the capabilities of the different techniques in predicting Cadmium (Cd) bioavailability in Cd-contaminated soils with the addition of Zn, one in situ technique (diffusive gradients in thin films; DGT) was compared with soil solution concentration and four widely used single-step extraction methods (acetic acid, EDTA, sodium acetate and CaCl 2 ). Wheat and maize were selected as tested species. The results demonstrated that single Cd-polluted soils inhibited the growth of wheat and maize significantly compared with control plants; the shoot and root biomasses of the plants both dropped significantly (P < 0.05). The addition of Zn exhibited a strong antagonism to the physiological toxicity induced by Cd. The Pearson correlation coefficient presented positive correlations (P < 0.01, R > 0.9) between Cd concentrations in two plants and Cd bioavailability indicated by each method in soils. Consequently, the results indicated that the DGT technique could be regarded as a good predictor of Cd bioavailability to plants, comparable to soil solution concentration and the four single-step extraction methods. Because the DGT technique can offer in situ data, it is expected to be widely used in more areas.

[Research advances in eco-toxicological diagnosis of soil pollution].

PubMed

Liu, Feng; Teng, Hong-Hui; Ren, Bai-Xiang; Shi, Shu-Yun

2014-09-01

Soil eco-toxicology provides a theoretical basis for ecological risk assessment of contaminated soils and soil pollution control. Research on eco-toxicological effects and molecular mechanisms of toxic substances in soil environment is the central content of the soil eco-toxicology. Eco-toxicological diagnosis not only gathers all the information of soil pollution, but also provides the overall toxic effects of soil. Therefore, research on the eco-toxicological diagnosis of soil pollution has important theoretical and practical significance. Based on the research of eco-toxicological diagnosis of soil pollution, this paper introduced some common toxicological methods and indicators, with the advantages and disadvantages of various methods discussed. However, conventional biomarkers can only indicate the class of stress, but fail to explain the molecular mechanism of damage or response happened. Biomarkers and molecular diagnostic techniques, which are used to evaluate toxicity of contaminated soil, can explore deeply detoxification mechanisms of organisms under exogenous stress. In this paper, these biomarkers and techniques were introduced systematically, and the future research trends were prospected.

Remote sensing as a tool for estimating soil erosion potential

NASA Technical Reports Server (NTRS)

Morris-Jones, D. R.; Morgan, K. M.; Kiefer, R. W.

1979-01-01

The Universal Soil Loss Equation is a frequently used methodology for estimating soil erosion potential. The Universal Soil Loss Equation requires a variety of types of geographic information (e.g. topographic slope, soil erodibility, land use, crop type, and soil conservation practice) in order to function. This information is traditionally gathered from topographic maps, soil surveys, field surveys, and interviews with farmers. Remote sensing data sources and interpretation techniques provide an alternative method for collecting information regarding land use, crop type, and soil conservation practice. Airphoto interpretation techniques and medium altitude, multi-date color and color infrared positive transparencies (70mm) were utilized in this study to determine their effectiveness for gathering the desired land use/land cover data. Successful results were obtained within the test site, a 6136 hectare watershed in Dane County, Wisconsin.

Pig slurry acidification and separation techniques affect soil N and C turnover and N2O emissions from solid, liquid and biochar fractions.

PubMed

Gómez-Muñoz, B; Case, S D C; Jensen, L S

2016-03-01

The combined effects of pig slurry acidification, subsequent separation techniques and biochar production from the solid fraction on N mineralisation and N2O and CO2 emissions in soil were investigated in an incubation experiment. Acidification of pig slurry increased N availability from the separated solid fractions in soil, but did not affect N2O and CO2 emissions. However acidification reduced soil N and C turnover from the liquid fraction. The use of more advanced separation techniques (flocculation and drainage > decanting centrifuge > screw press) increased N mineralisation from acidified solid fractions, but also increased N2O and CO2 emissions in soil amended with the liquid fraction. Finally, the biochar production from the solid fraction of pig slurry resulted in a very recalcitrant material, which reduced N and C mineralisation in soil compared to the raw solid fractions. Copyright © 2015 Elsevier Ltd. All rights reserved.

Geotechnical behaviour of low-permeability soils in surfactant-enhanced electrokinetic remediation.

PubMed

López-Vizcaíno, Rubén; Navarro, Vicente; Alonso, Juan; Yustres, Ángel; Cañizares, Pablo; Rodrigo, Manuel A; Sáez, Cristina

2016-01-01

Electrokinetic processes provide the basis of a range of very interesting techniques for the remediation of polluted soils. These techniques consist of the application of a current field in the soil that develops different transport mechanisms capable of mobilizing several types of pollutants. However, the use of these techniques could generate nondesirable effects related to the geomechanical behavior of the soil, reducing the effectiveness of the processes. In the case of the remediation of polluted soils with plasticity index higher than 35, an excessive shrinkage can be observed in remediation test. For this reason, the continued evaporation that takes place in the sample top can lead to the development of cracks, distorting the electrokinetic transport regime, and consequently, the development of the operation. On the other hand, when analyzing silty soils, in the surroundings of injection surfactant wells, high seepages can be generated that give rise to the development of piping processes. In this article methods are described to allow a reduction, or to even eliminate, both problems.

Soil mixing design methods and construction techniques for use in high organic soils.

DOT National Transportation Integrated Search

2015-06-01

Organic soils present a difficult challenge for roadway designers and construction due to the high : compressibility of the soil structure and the often associated high water table and moisture content. For : other soft or loose inorganic soils, stab...

Update on Bioengineering.

ERIC Educational Resources Information Center

Basta, Nicholas

1986-01-01

Discusses the human, plant and animal, and industrial dimensions of biotechnology, focusing on current uses in such fields as: (1) genetics; (2) electronics; (3) prosthetics; (4) drugs; (5) agriculture; and (6) the environment. (JN)

78 FR 30319 - Center for Scientific Review; Notice of Closed Meetings

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-22

... Committee: Bioengineering Sciences & Technologies Integrated Review Group; Gene and Drug Delivery Systems..., [email protected] . (Catalogue of Federal Domestic Assistance Program Nos. 93.306, Comparative Medicine...

78 FR 64514 - Center for Scientific Review; Notice of Closed Meetings

Federal Register 2010, 2011, 2012, 2013, 2014

2013-10-29

...: Psycho/Neuropathology, Lifespan Development, and Science, Education. Date: November 13, 2013. Time: 8:00... Scientific Review Special Emphasis Panel; Bioengineering Sciences and Technologies: AREA Review. Date...

Electrokinetic In Situ Treatment of Metal-Contaminated Soil

NASA Technical Reports Server (NTRS)

Quinn, Jacqueline; Clausen, Christian A., III; Geiger, Cherie; Reinhart, Debra

2004-01-01

An electrokinetic technique has been developed as a means of in situ remediation of soils, sludges, and sediments that are contaminated with heavy metals. Examples of common metal contaminants that can be removed by this technique include cadmium, chromium, zinc, lead, mercury, and radionuclides. Some organic contaminants can also be removed by this technique. In the electrokinetic technique, a low-intensity direct current is applied between electrodes that have been implanted in the ground on each side of a contaminated soil mass. The electric current causes electro-osmosis and migration of ions, thereby moving aqueous-phase subsurface contaminants from one electrode to the other. The half reaction at the anode yields H+, thereby generating an acid front that travels from the anode toward the cathode. As this acid front passes through a given location, the local increase in acidity increases the solubility of cations that were previously adsorbed on soil particles. Ions are transported towards one electrode or the other which one depending on their respective electric charges. Upon arrival at the electrodes, the ionic contaminants can be allowed to become deposited on the electrodes or can be extracted to a recovery system. Surfactants and other reagents can be introduced at the electrodes to enhance rates of removal of contaminants. Placements of electrodes and concentrations and rates of pumping of reagents can be adjusted to maximize efficiency. The basic concept of electrokinetic treatment of soil is not new. What is new here are some of the details of application and the utilization of this technique as an alternative to other techniques (e.g., flushing or bioremediation) that are not suitable for treating soils of low hydraulic conductivity. Another novel aspect is the use of this technique as a less expensive alternative to excavation: The cost advantage over excavation is especially large in settings in which contaminated soil lies near and/or under industrial buildings and therefore excavation would be made even more expensive by the need to prevent damage to numerous underground pipes and cables.

Experimental study of the dynamics of penetration of a solid body into a soil medium

NASA Astrophysics Data System (ADS)

Balandin, Vl. V.; Balandin, Vl. Vl.; Bragov, A. M.; Kotov, V. L.

2016-06-01

An experimental system is developed to determine the main parameters of the impact and penetration of a solid deformable body into a soft soil medium. This system is based on the technique of an inverse experiment with a measuring rod and the technique of a direct experiment with photo recording and the application of a shadow picture of the interaction of a striker with a soil target. To verify these techniques, the collision of a solid body with soil is studied by a numerical calculation and the time intervals in which the change of the resistance force is proportional to the penetration velocity squared are determined. The penetration resistance coefficients determined in direct and inverse experiments are shown to agree with each other in the collision velocity range 80-400 m/s, which supports the validity of the techniques and the reliability of measuring the total load.

Soil mixing design methods and construction techniques for use in high organic soils : [summary].

DOT National Transportation Integrated Search

2015-10-01

The soils which serve as foundations for construction projects may be roughly classified as : inorganic or organic. Inorganic soils vary in firmness and suitability for construction. Soft : or loose inorganic soils may be stabilized using cement or s...

Micromorphology of pelletized soil conditioners

NASA Astrophysics Data System (ADS)

Hirsch, Florian; Dietrich, Nils; Knoop, Christine; Raab, Thomas

2017-04-01

Soil conditioners produced by anaerobic digestion and subsequent composting of organic household waste, bear the potential to improve unproductive farmland together with a reduced input risk of unwanted pollutants into the soils. Within the VeNGA project (http://www.biogas-network.de/venga), soil conditioners from anaerobically digested organic household waste are tested for their potential to increase plant growth in glasshouse and field experiments. Because the production techniques of these soil conditioners may influence their physical and chemical behaviour in the soil, two different techniques for pelletizing the soil conditioners where applied. We present findings from a pot experiment with cereal that has been sampled after two months for micromorphological analyses. We visualize the decomposition and the physical behaviour of the soil conditioners. Pellets produced in an agglomeration mixer result in dense balls, that are only slightly decomposed after the trial. But the soil conditioners created under pressure in a screw extruder are rich in voids and have the potential of retaining more soil water.

Research on the degradation of tropical arable land soil: Part II. The distribution of soil nutrients in eastern part of Hainan Island

NASA Astrophysics Data System (ADS)

Wang, Dengfeng; Wei, Zhiyuan; Qi, Zhiping

Research on the temporal and spatial distribution of soil nutrients in tropical arable land is very important to promote the tropical sustainable agriculture development. Take the Eastern part of Hainan as research area, applying GIS spatial analysis technique, analyzing the temporal and spatial variation of soil N, P and K contents in arable land. The results indicate that the contents of soil N, P and K were 0.28%, 0.20% and 1.75% respectively in 2005. The concentrations of total N and P in arable land soil increased significantly from 1980s to 2005. The variances in contents of soil nutrients were closely related to the application of chemical fertilizers in recent years, and the uneven distribution of soil nutrient contents was a reflection of fertilizer application in research area. Fertilization can be planned based on the distribution of soil nutrients and the spatial analysis techniques, so as to sustain balance of soil nutrients contents.

78 FR 35943 - Center for Scientific Review; Notice of Closed Meeting

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76 FR 10382 - Center for Scientific Review; Notice of Closed Meetings

Federal Register 2010, 2011, 2012, 2013, 2014

2011-02-24

... Biomedicine and Agriculture: Infectious Diseases, Immunology and the Circulatory System. Date: March 21, 2011... Committee: Center for Scientific Review Special Emphasis Panel; Bioengineering Special Topics. Date: March...

Corrosive effect of the type of soil in the systems of grounding more used (copper and stainless steel) for local soil samples from the city of Tunja (Colombia), by means of electrochemical techniques

NASA Astrophysics Data System (ADS)

Guerrero, L.; Salas, Y.; Blanco, J.

2016-02-01

In this work electrochemical techniques were used to determine the corrosion behaviour of copper and stainless steel electrodes, used in grounding varying soil type with which they react. A slight but significant change in the corrosion rate, linear polarization resistance and equivalent parameters in the technique of electrochemical impedance spectroscopy circuit was observed. Electrolytes in soils are slightly different depending on laboratory study, but the influence was noted in the retention capacity of water, mainly due to clays, affecting ion mobility and therefore measures such as the corrosion rate. Behaviour was noted in lower potential for copper corrosion, though the corrosion rate regardless of the type of soil, was much higher for electrodes based on copper, by several orders of magnitude.

Lunar mineral feedstocks from rocks and soils: X-ray digital imaging in resource evaluation

NASA Technical Reports Server (NTRS)

Chambers, John G.; Patchen, Allan; Taylor, Lawrence A.; Higgins, Stefan J.; Mckay, David S.

1994-01-01

The rocks and soils of the Moon provide raw materials essential to the successful establishment of a lunar base. Efficient exploitation of these resources requires accurate characterization of mineral abundances, sizes/shapes, and association of 'ore' and 'gangue' phases, as well as the technology to generate high-yield/high-grade feedstocks. Only recently have x-ray mapping and digital imaging techniques been applied to lunar resource evaluation. The topics covered include inherent differences between lunar basalts and soils and quantitative comparison of rock-derived and soil-derived ilmenite concentrates. It is concluded that x-ray digital-imaging characterization of lunar raw materials provides a quantitative comparison that is unattainable by traditional petrographic techniques. These data are necessary for accurately determining mineral distributions of soil and crushed rock material. Application of these techniques will provide an important link to choosing the best raw material for mineral beneficiation.

Anaerobic soil disinfestation: Carbon rate effects on tomato plant growth and organic acid production

USDA-ARS?s Scientific Manuscript database

Anaerobic soil disinfestation (ASD) is a non-chemical soil disinfestation technique proposed for the control of soil-borne pathogens, plant parasitic-nematodes, and weeds in different crops. ASD is applied in three steps: 1) Soil amendment with a labile carbon (C) source; 2) Cover the soil with tota...

Assessing quality in volcanic ash soils

Treesearch

Terry L. Craigg; Steven W. Howes

2007-01-01

Forest managers must understand how changes in soil quality resulting from project implementation affect long-term productivity and watershed health. Volcanic ash soils have unique properties that affect their quality and function; and which may warrant soil quality standards and assessment techniques that are different from other soils. We discuss the concept of soil...

Electromigration of Contaminated Soil by Electro-Bioremediation Technique

NASA Astrophysics Data System (ADS)

Azhar, A. T. S.; Nabila, A. T. A.; Nurshuhaila, M. S.; Shaylinda, M. Z. N.; Azim, M. A. M.

2016-07-01

Soil contamination with heavy metals poses major environmental and human health problems. This problem needs an efficient method and affordable technological solution such as electro-bioremediation technique. The electro-bioremediation technique used in this study is the combination of bacteria and electrokinetic process. The aim of this study is to investigate the effectiveness of Pseudomonas putida bacteria as a biodegradation agent to remediate contaminated soil. 5 kg of kaolin soil was spiked with 5 g of zinc oxide. During this process, the anode reservoir was filled with Pseudomonas putida while the cathode was filled with distilled water for 5 days at 50 V of electrical gradient. The X-Ray Fluorescent (XRF) test indicated that there was a significant reduction of zinc concentration for the soil near the anode with 89% percentage removal. The bacteria count is high near the anode which is 1.3x107 cfu/gww whereas the bacteria count at the middle and near the cathode was 5.0x106 cfu/gww and 8.0x106 cfu/gww respectively. The migration of ions to the opposite charge of electrodes during the electrokinetic process resulted from the reduction of zinc. The results obtained proved that the electro-bioremediation reduced the level of contaminants in the soil sample. Thus, the electro-bioremediation technique has the potential to be used in the treatment of contaminated soil.

Removal of arsenic from Janghang smelter site and energy crops-grown soil with soil washing using magnetic iron oxide

NASA Astrophysics Data System (ADS)

Han, Jaemaro; Zhao, Xin; Lee, Jong Keun; Kim, Jae Young

2014-05-01

Arsenic compounds are considered carcinogen and easily enter drinking water supplies with their natural abundance. US Environmental Protection Agency is finalizing a regulation to reduce the public health risks from arsenic in drinking water by revising the current drinking water standard for arsenic from 50 ppb to 10 ppb in 2001 (USEPA, 2001). Therefore, soil remediation is also growing field to prevent contamination of groundwater as well as crop cultivation. Soil washing is adjusted as ex-situ soil remediation technique which reduces volume of the contaminated soil. The technique is composed of physical separation and chemical extraction to extract target metal contamination in the soil. Chemical extraction methods have been developed solubilizing contaminants containing reagents such as acids or chelating agents. And acid extraction is proven as the most commonly used technology to treat heavy metals in soil, sediment, and sludge (FRTR, 2007). Due to the unique physical and chemical properties, magnetic iron oxide have been used in diverse areas including information technology and biomedicine. Magnetic iron oxides also can be used as adsorbent to heavy metal enhancing removal efficiency of arsenic concentration. In this study, magnetite is used as the washing agent with acid extraction condition so that the injected oxide can be separated by magnetic field. Soil samples were collected from three separate areas in the Janghang smelter site and energy crops-grown soil to have synergy effect with phytoremediation. Each sample was air-dried and sieved (2mm). Soil washing condition was adjusted on pH in the range of 0-12 with hydrogen chloride and sodium hydroxide. After performing soil washing procedure, arsenic-extracted samples were analyzed for arsenic concentration by inductively coupled plasma optical emission spectrometer (ICP-OES). All the soils have exceeded worrisome level of soil contamination for region 1 (25mg/kg) so the soil remediation techniques are needed to be applied. The objective of this study is to investigate soil washing efficiency using magnetic iron oxide and derive the availability of the washing technique to the arsenic-contaminated field soils. Acknowledgement This study was supported by Korea Ministry of Environment as 'Knowledge-based environmental service (Waste to Energy) Human Resource Development Project'.

Classical transport in disordered systems

NASA Astrophysics Data System (ADS)

Papaioannou, Antonios

This thesis reports on the manifestation of structural disorder on molecular transport and it consists of two parts. Part I discusses the relations between classical transport and the underlying structural complexity of the system. Both types of molecular diffusion, namely Gaussian and non- Gaussian are presented and the relevant time regimes are discussed. In addition the concept of structural universality is introduced and connected with the diffusion metrics. One of the most robust techniques for measuring molecular mean square displacements is magnetic resonance. This method requires encoding and subsequently reading out after an experimentally controlled time, a phase φ to the spins using magnetic field gradients. The main limitation for probing short diffusion lengths L(t) ˜ 1micro m with magnetic resonance is the requirement to encode and decode the phase φ in very short time intervals. Therefore, to probe such displacements a special probe was developed equipped with a gradient coil capable of delivering magnetic field gradients of approximately 90 G/cmA . The design of the probe is reported. Part I also includes a discussion of experiments of transport in two qualitatively different disordered phantoms and reports on a direct observation of universality in one-dimension. The results reveal the universal power law scaling of the diffusion coefficient at the long-time regime and illustrate the essence of structural universality by experimentally determining the structure correlation function of the phantoms. In addition, the scaling of the diffusive permeability of the phantoms with respect to the pore size is investigated. Additional work presented includes a detailed study of adsorption of methane gas in Vycor disordered glass. The techniques described in Part I of this thesis are widely used for measuring structural parameters of porous media, such as the surface-to-volume ratio or diffusive permeability. Part II of this thesis discusses the biophysical application of diffusion in disordered systems in the field of bioengineering. Elastin-based bioengineered scaffolds, which are mainly used for tissue and bone regeneration, must be able to deliver nutrients to the native tissue. It is therefore essential to quantitatively assess their structural parameters such as their surface-to-volume ratio and diffusive permeability. Part II focuses on a detailed study of structure and dynamics of elastin, the principle protein component found in tissues and one of the main components for scaffold engineering, using NMR 13C-MAS techniques. Lastly, the second half of Part II, discusses preliminary experiments of diffusion in elastin-based films.

Case studies identify savings of up to $40,000 for academic research laboratories with the use of video journals

NASA Astrophysics Data System (ADS)

Pritsker, Moshe

2015-04-01

Recent studies indicate that 70% to 90% of results published in science journals are not reproducible, which presents troubling uncertainty about the future of scientific research. In contrast to the text format of traditional journals, novel video-based journals allow for systematic, step-by-step visualized demonstrations of research experiments. Video articles produce a more efficient transfer of knowledge between laboratories and therefore offer a viable solution to the issue of reproducibility. To quantify the savings of time and money generated by this alternative mode of scientific communication, we conducted a number of case studies among academic laboratories who use the peer-reviewed video journal JoVE. One study determined that using video as a guide to learn a new dissection technique saved a bioengineering lab at the University of Washington 40,000. A second case study found that a laboratory at Cornell University studying muscular dystrophy eliminated 6 months of experimentation by learning a new complex stem cell injection technique from the video journal. Results from a third study indicated that a laboratory at the University of Helsinki shortened the time to learn a surgical technique from 1 year to 2 weeks. Together, these studies indicate that video publication significantly enhances the reproducibility and productivity of scientific research.

Preparation of laminated poly(ε-caprolactone)-gelatin-hydroxyapatite nanocomposite scaffold bioengineered via compound techniques for bone substitution

PubMed Central

Hamlekhan, Azhang; Moztarzadeh, Fathollah; Mozafari, Masoud; Azami, Mahmoud; Nezafati, Nader

2011-01-01

In this research, new bioactive nanocomposite scaffolds were successfully developed using poly(ε-caprolactone) (PCL), cross-linked gelatin and nanoparticles of hydroxyapatite (HAp) after testing different solvents and methods. First, HAp powder was synthesized via a chemical precipitation technique and characterized. Then, the nanocomposites were prepared through layer solvent casting combined with freeze-drying and lamination techniques. According to the results, the increasing of the PCL weight in the scaffolds led to the improvement of the mechanical properties. The amount of ultimate stress, stiffness and also elastic modulus increased from 8 MPa for 0% wt PCL to 23.5 MPa for 50% wt PCL. The biomineralization study revealed the formation of an apatite layer on the scaffolds after immersion in simulated body fluid (SBF). The Ca-P ratios were in accordance to nonstoichiometric biological apatite, which was approximately 1.67. The in vitro biocompatibility and cytocompatibility of the scaffolds were tested using mesenchymal stem cells (MSCs), and the results indicated no sign of toxicity, and cells were found to be attached to the scaffold walls. The in vivo biocompatibility and osteogenesis of these scaffolds in the animal experiments is also under investigation, and the result will be published at the end of the study. PMID:23507731

imVisIR - a new tool for high resolution soil characterisation

NASA Astrophysics Data System (ADS)

Steffens, Markus; Buddenbaum, Henning

2014-05-01

The physical and chemical heterogeneities of soils are the source of a vast functional diversity of soil properties in a multitude of spatial domains. But many studies do not consider the spatial variability of soil types, diagnostic horizons and properties. These lateral and vertical heterogeneities of soils or soil horizons are mostly neglected due to the limitations in the available soil data and missing techniques to gather the information. We present an imaging technique that enables the spatially accurate, high resolution assessment (63×63 µm2 per pixel) of complete soil profiles consisting of mineral and organic horizons. We used a stainless steel box (100×100×300 mm3) to sample various soil types and a hyperspectral camera to record the bidirectional reflectance of the large undisturbed soil samples in the visible and near infrared (Vis-NIR) part of the electromagnetic spectrum (400-1000 nm in 160 spectral bands). Various statistical, geostatistical and image processing tools were used to 1) assess the spatial variability of the soil profile as a whole; 2) classify diagnostic horizons; 3) extrapolate elemental concentrations of small sampling areas to the complete image and calculate high resolution chemometric maps of up to five elements (C, N, Al, Fe, Mn); and 4) derive maps of the chemical composition of soil organic matter. Imaging Vis-NIR (imVisIR) has the potential to significantly improve soil classification, assessment of elemental budgets and balances and the understanding of soil forming processes and mechanisms. It will help to identify areas of interest for techniques working on smaller scales and enable the upscaling and referencing of this information to the complete pedon.

Correlation of Three Techniques for Determining Soil Permeability

ERIC Educational Resources Information Center

Winneberger, John T.

1974-01-01

Discusses problems of acquiring adequate results when measuring for soil permeability. Correlates three relatively simple techniques that could be helpful to the inexperienced technician dealing with septic tank practices. An appendix includes procedures for valid percolation tests. (MLB)

An evaluation of methods for identifying and interpreting buried soils in late Quaternary loess in Alaska: A section in Geologic studies in Alaska by the U.S. Geological Survey, 1998

USGS Publications Warehouse

Muhs, Daniel R.; Ager, Thomas A.; Been, Josh M.; Rosenbaum, Joseph G.; Reynolds, Richard J.

2000-01-01

The presence of buried soils in Alaskan loess is controversial, and therefore criteria for identifying buried soils in these deposits need to be evaluated. In this paper, morphologic and chemical criteria for identifying buried soils are evaluated by studying modern soils developed mostly in Holocene loess under tundra, boreal forest, and transitional coastal-boreal forest vegetation in different parts of Alaska. Data from modern Alaskan soils that developed under vegetation similar to that of the present indicate that soil morphology, organic-matter concentrations, and P concentrations can be useful diagnostic tools for identifying buried soils. Soil morphologic criteria, particularly horizon colors and horizon sequences, are essential for identifying buried soils, but some minimally developed soils may resemble organic-rich alluvial, colluvial, or lacustrine deposits. Organic matter and total P contents and distributions can aid in such studies because in well-drained soils these constituents show rapid declines with depth. However, neither of these techniques may work if the upper genetic horizons of buried soils are eroded.If buried soils are present in Alaskan loess, it would also be desirable to have techniques for determining the dominant vegetation under which the soils formed. Such techniques could then be used to reconstruct former vegetation types and paleoclimates in Alaska. A previous study suggested that tundra and boreal forest vegetation have distinctive carbon isotopic compositions, although both are dominated by C3 plants. If this is the case, then the carbon isotopic composition of organic matter in buried soils could be used to reconstruct former vegetation types. A larger suite of modern soils from Alaskan tundra and forest were analyzed to test this hypothesis. Results indicate that modern soil O horizons in these two biomes have the same range of δ13C values, and therefore carbon isotope compositions cannot be used to reconstruct former tundra or boreal forest.

Studying the spatial variability of Cr in agricultural field using both particle induced X-ray emission (PIXE) and instrumental neutron activation analysis (INAA) technique

NASA Astrophysics Data System (ADS)

Cruvinel, Paulo E.; Crestana, Sílvio; Artaxo, Paulo; Martins, JoséV.; Armelin, Maria JoséA.

1996-04-01

In the field of soil physics, a technique which permits a non-destructive, accurate and fast elemental analysis with a minimum of sample preparation effort is often desired. Although trace elements are minor components of the solid phase, they play an important role in soil fertility. Cr is of nutritional importance because it is a required element in human and animal nutrition. The immobility of Cr may be responsible for an inadequate Cr supply to plants. This work not only demonstrates the suitability of PIXE as a fast and non-destructive technique, useful to measure Cr content in soil samples, but also outlines a study of spatial variability of that element in agricultural field. To demonstrate the capability of the method soil samples were collected in a 5000 m 2 agricultural field. The soil samples were analyzed using both PIXE and INAA techniques. Besides, a Fourier interpolation technique was used to verify the distribution of Cr along of the sampled field. INAA was carried out by means of the γ-ray emitted by 51Cr(320 keV). Results show that there is a good linear relationship between the elemental concentration of Cr obtained using those techniques, i.e. a correlation coefficient of r2 = 0.82 was achieved.

Rehabilitation and the Veterans' Administration

NASA Technical Reports Server (NTRS)

Meister, F.

1974-01-01

The Veteran's Administration health care system provides prosthetic and sensory aids for the rehabilitation of neurologically handicapped veterans. Research and development centers include prosthetic clinic teams, orthopedic shops, restoration clinics, bioengineering services, orthotics, etc.

A Program for Clinical Care in Physical Trauma--Combat Surgery and Bioengineering.

DTIC Science & Technology

and energy exchange; Bone composition and fractures; Computer technology in intensive care; Manitol toxicity; Liver blood flow transplantation; Infections and immunology--Candida infection and Pseudomonas immunity. (Author)

77 FR 25036 - Hispanic-Serving Agricultural Colleges and Universities (HSACU) Certification Process

Federal Register 2010, 2011, 2012, 2013, 2014

2012-04-27

..., Agricultural Power Machinery Operation 01.0205, Agricultural Mechanics and Equipment/Machine Technology 01.0299... Education 14.0301, Agricultural/Biological Engineering and Bioengineering 19.0501, Foods, Nutrition, and...

A comparison of in situ methods for measuring net nitrogen mineralization rates of organic soil amendments.

PubMed

Hanselman, Travis A; Graetz, Donald A; Obreza, Thomas A

2004-01-01

In situ incubation methods may help provide site-specific estimates of N mineralization from land-applied wastes. However, there are concerns about the reliability of the data generated by the various methods due to containment artifacts. We amended a sandy soil with either poultry manure, biosolids, or yard-waste compost and incubated the mixtures using four in situ methods (buried bags, covered cylinders, standard resin traps, and "new" soil-resin traps) and a conventional laboratory technique in plastic bags. Each incubation device was destructively sampled at 45-d intervals for 180 d and net N mineralization was determined by measuring the amount of inorganic N that accumulated in the soil or soil plus resin traps. Containment effects were evaluated by comparing water content of the containerized soil to a field-reference soil column. In situ incubation methods provided reasonable estimates of short-term (< 45 d) N mineralization, but long-term (> 45 d) mineralization data were not accurate due to a variety of problems specific to each technique. Buried bags and covered cylinders did not retain mineralized N due to water movement into and out of the containers. Neither resin method captured all of the mineralized N that leached through the soil columns, but the new soil-resin trap method tracked field soil water content better than all other in situ methods evaluated. With further refinement and validation, the new soil-resin trap method may be a useful in situ incubation technique for measuring net N mineralization rates of organic soil amendments.

Characterization of Soil Samples of Enzyme Activity

ERIC Educational Resources Information Center

Freeland, P. W.

1977-01-01

Described are nine enzyme essays for distinguishing soil samples. Colorimetric methods are used to compare enzyme levels in soils from different sites. Each soil tested had its own spectrum of activity. Attention is drawn to applications of this technique in forensic science and in studies of soil fertility. (Author/AJ)

The Future of Asthma Monitoring | NIH MedlinePlus the Magazine

MedlinePlus

... Institute of Biomedical Imaging and Bioengineering (NIBIB) uses biosensors to gather data about environmental and other factors involved in childhood asthma. Biosensors are devices that detect and measure biochemical changes ...

78 FR 25752 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

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2013-05-02

..., Two Democracy Plaza, 951, 6707 Democracy Boulevard, Bethesda, MD 20892, (Virtual Meeting). Contact..., Two Democracy Plaza, Suite 920, 6707 Democracy Boulevard, Bethesda, MD 20892, (Virtual Meeting...

78 FR 37557 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

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2013-06-21

... (Virtual Meeting). Contact Person: Ruth Grossman, DDS, Scientific Review Officer, National Institute of... Plaza, Suite 920, 6707 Democracy Boulevard, Bethesda, MD 20892 (Virtual Meeting). Contact Person: Ruth...

78 FR 24763 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2013-04-26

... consideration of personal qualifications and performance, and the competence of individual investigators, the... performance, and competence of individual investigators. Place: National Institutes of Health, Lawton Chiles...

A Multidisciplinary Course in Bioengineering.

ERIC Educational Resources Information Center

Bienkowski, Paul R.; And Others

1989-01-01

Outlines a graduate course, "Microbial Systems Analysis," for students in chemical and environmental engineering or engineering mechanics, as well as microbiology, ecology and biotechnology. Describes the objectives, structure and laboratory experiments for the course. (YP)

77 FR 74675 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

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2012-12-17

... Person: Ruth Grossman, DDS, Scientific Review Officer, National Institute of Biomedical Imaging and... Person: Ruth Grossman, DDS, Scientific Review Officer, National Institute of Biomedical Imaging and...

78 FR 3903 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meetings

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2013-01-17

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77 FR 38845 - National Institute of Biomedical Imaging and Bioengineering; Notice of Closed Meeting

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2012-06-29

... Health, Two Democracy Plaza, 6707 Democracy Boulevard, Bethesda, MD 20892, (Virtual Meeting). Contact Person: Ruixia Zhou, Ph.D., Scientific Review Officer, 6707 Democracy Boulevard, Democracy Two Building...

78 FR 64229 - Center for Scientific Review; Notice of Closed Meetings

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2013-10-28

... Committee: AIDS and Related Research Integrated Review Group; AIDS Molecular and Cellular Biology Study...; Fellowships: Cell Biology, Developmental Biology and Bioengineering. Date: November 18-19, 2013. Time: 10:00 a...

78 FR 10186 - Center For Scientific Review; Notice of Closed Meetings

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2013-02-13

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Bioengineering of Artificial Antigen Presenting Cells and Lymphoid Organs

PubMed Central

Wang, Chao; Sun, Wujin; Ye, Yanqi; Bomba, Hunter N.; Gu, Zhen

2017-01-01

The immune system protects the body against a wide range of infectious diseases and cancer by leveraging the efficiency of immune cells and lymphoid organs. Over the past decade, immune cell/organ therapies based on the manipulation, infusion, and implantation of autologous or allogeneic immune cells/organs into patients have been widely tested and have made great progress in clinical applications. Despite these advances, therapy with natural immune cells or lymphoid organs is relatively expensive and time-consuming. Alternatively, biomimetic materials and strategies have been applied to develop artificial immune cells and lymphoid organs, which have attracted considerable attentions. In this review, we survey the latest studies on engineering biomimetic materials for immunotherapy, focusing on the perspectives of bioengineering artificial antigen presenting cells and lymphoid organs. The opportunities and challenges of this field are also discussed. PMID:28912891

Bioengineering of Artificial Antigen Presenting Cells and Lymphoid Organs.

PubMed

Wang, Chao; Sun, Wujin; Ye, Yanqi; Bomba, Hunter N; Gu, Zhen

2017-01-01

The immune system protects the body against a wide range of infectious diseases and cancer by leveraging the efficiency of immune cells and lymphoid organs. Over the past decade, immune cell/organ therapies based on the manipulation, infusion, and implantation of autologous or allogeneic immune cells/organs into patients have been widely tested and have made great progress in clinical applications. Despite these advances, therapy with natural immune cells or lymphoid organs is relatively expensive and time-consuming. Alternatively, biomimetic materials and strategies have been applied to develop artificial immune cells and lymphoid organs, which have attracted considerable attentions. In this review, we survey the latest studies on engineering biomimetic materials for immunotherapy, focusing on the perspectives of bioengineering artificial antigen presenting cells and lymphoid organs. The opportunities and challenges of this field are also discussed.

Odontogenic epithelial stem cells: hidden sources.

PubMed

Padma Priya, Sivan; Higuchi, Akon; Abu Fanas, Salem; Pooi Ling, Mok; Kumari Neela, Vasantha; Sunil, P M; Saraswathi, T R; Murugan, Kadarkarai; Alarfaj, Abdullah A; Munusamy, Murugan A; Kumar, Suresh

2015-12-01

The ultimate goal of dental stem cell research is to construct a bioengineered tooth. Tooth formation occurs based on the well-organized reciprocal interaction of epithelial and mesenchymal cells. The dental mesenchymal stem cells are the best explored, but because the human odontogenic epithelium is lost after the completion of enamel formation, studies on these cells are scarce. The successful creation of a bioengineered tooth is achievable only when the odontogenic epithelium is reconstructed to produce a replica of natural enamel. This article discusses the untapped sources of odontogenic epithelial stem cells in humans, such as those present in the active dental lamina in postnatal life, in remnants of dental lamina (the gubernaculum cord), in the epithelial cell rests of Malassez, and in reduced enamel epithelium. The possible uses of these stem cells in regenerative medicine, not just for enamel formation, are discussed.

Bioengineered baculoviruses as new class of therapeutics using micro and nanotechnologies: principles, prospects and challenges.

PubMed

Paul, Arghya; Hasan, Anwarul; Rodes, Laetitia; Sangaralingam, Mugundhine; Prakash, Satya

2014-05-01

Designing a safe and efficient gene delivery system is required for success of gene therapy trials. Although a wide variety of viral, non-viral and polymeric nanoparticle based careers have been widely studied, the current gene delivery vehicles are limited by their suboptimal, non-specific therapeutic efficacy and acute immunological reactions, leading to unwanted side effects. Recently, there has been a growing interest in insect-cell-originated baculoviruses as gene delivery vehicles for diverse biomedical applications. Specifically, the emergence of diverse types of surface functionalized and bioengineered baculoviruses is posed to edge over currently available gene delivery vehicles. This is primarily because baculoviruses are comparatively non-pathogenic and non-toxic as they cannot replicate in mammalian cells and do not invoke any cytopathic effect. Moreover, emerging advanced studies in this direction have demonstrated that hybridizing the baculovirus surface with different kinds of bioactive therapeutic molecules, cell-specific targeting moieties, protective polymeric grafts and nanomaterials can significantly improve the preclinical efficacy of baculoviruses. This review presents a comprehensive overview of the recent advancements in the field of bioengineering and biotherapeutics to engineer baculovirus hybrids for tailored gene therapy, and articulates in detail the potential and challenges of these strategies for clinical realization. In addition, the article illustrates the rapid evolvement of microfluidic devices as a high throughput platform for optimizing baculovirus production and treatment conditions. Copyright © 2014 Elsevier B.V. All rights reserved.

Bioengineered Systems and Designer Matrices That Recapitulate the Intestinal Stem Cell Niche.

PubMed

Wang, Yuli; Kim, Raehyun; Hinman, Samuel S; Zwarycz, Bailey; Magness, Scott T; Allbritton, Nancy L

2018-03-01

The relationship between intestinal stem cells (ISCs) and the surrounding niche environment is complex and dynamic. Key factors localized at the base of the crypt are necessary to promote ISC self-renewal and proliferation, to ultimately provide a constant stream of differentiated cells to maintain the epithelial barrier. These factors diminish as epithelial cells divide, migrate away from the crypt base, differentiate into the postmitotic lineages, and end their life span in approximately 7 days when they are sloughed into the intestinal lumen. To facilitate the rapid and complex physiology of ISC-driven epithelial renewal, in vivo gradients of growth factors, extracellular matrix, bacterial products, gases, and stiffness are formed along the crypt-villus axis. New bioengineered tools and platforms are available to recapitulate various gradients and support the stereotypical cellular responses associated with these gradients. Many of these technologies have been paired with primary small intestinal and colonic epithelial cells to re-create select aspects of normal physiology or disease states. These biomimetic platforms are becoming increasingly sophisticated with the rapid discovery of new niche factors and gradients. These advancements are contributing to the development of high-fidelity tissue constructs for basic science applications, drug screening, and personalized medicine applications. Here, we discuss the direct and indirect evidence for many of the important gradients found in vivo and their successful application to date in bioengineered in vitro models, including organ-on-chip and microfluidic culture devices.

Bioengineered bugs, drugs and contentious issues in patenting

PubMed Central

2010-01-01

Bioengineered bugs, as is the scope of this journal, have great potential in various practical applications. A corollary to bringing useful products to the market is that such products need protection from copying by other people or businesses. Such government-sponsored protections are legally enforced through a patent, copyright or trademark/trade secret system commonly known as intellectual property rights. A condition for obtaining a patent is that the invention must not be disclosed to public either through seminars, informal public disclosures or publications in journals, although in the United States, there is a one year grace period that is allowed to obtain a patent after public disclosure. This article describes my personal experience in obtaining a patent in 1980 on a genetically manipulated bacterium designed for oil spill cleanup. This patent application went through a series of court cases that finally ended up in the Supreme Court of the United States. I also mention a similar contentious legal issue that is on the horizon and that the readers of Bioengineered Bugs should be aware of. Finally, I have taken the opportunity to describe my current efforts to bring to the market some unique potential multi-disease-targeting candidate drugs from Pseudomonas aeruginosa and gonococci/meningococci that, if found non-toxic and efficacious in humans, will revolutionize the drug industry. To ensure their marketability, we are trying to develop a patent portfolio that will ensure that they will be legally protected and such protections will be broad-based and enforceable. PMID:21327122

Femtosecond laser cutting of multiple thin corneal stromal lamellae for endothelial bioengineering.

PubMed

Bernard, Aurélien; He, Zhiguo; Forest, Fabien; Gauthier, Anne-Sophie; Peocʼh, Michel; Dumollard, Jean-Marc; Acquart, Sophie; Montard, Romain; Delbosc, Bernard; Gain, Philippe; Thuret, Gilles

2015-02-01

To assess the feasibility of cutting multiple thin stromal lamellae in human donor corneas using a commercial femtosecond laser (FSL) to provide cell carriers for future endothelial graft bioengineering. Eight edematous organ-cultured corneas not suitable for grafting for endothelial reasons were mounted on a Ziemer anterior chamber and cut with a Z6 FSL with 6 successive parallel cuts, from depth to surface. Target thickness of each lamella ranged from 100 to 150 μm depending on initial corneal thickness. Thickness was measured using anterior segment optical coherence tomography before and after cutting on mounted corneas, and on each stromal lamella after detachment. Scanning electron microscopy observation was performed on 4 lamellae and histological cross sections on 1 cornea before detachment. A median of 5 (minimum 3, maximum 7) lamellae was obtained per cornea. All lamellae still attached were the most posterior ones, suggesting that FSL was less efficient because of light scattering by edematous stroma. Cut precision and postdetachment swelling were correlated with anterior-posterior position within the cornea. Median lamella thickness was 127 μm (56-222 μm) before detachment and 196 μm (80-304 μm) after detachment. Surface state was consistent with previously reported FSL lamellar cuts during Descemet stripping automated endothelial keratoplasty. Up to 7 thin lamellae can be cut in stored corneas with an FSL. This method, once optimized primarily by using deswelled, more transparent corneas, could prove effective for recycling unsuitable donor corneas in corneal bioengineering processes.

Bioengineering bacteriophages to enhance the sensitivity of phage amplification-based paper fluidic detection of bacteria.

PubMed

Alcaine, S D; Law, K; Ho, S; Kinchla, A J; Sela, D A; Nugen, S R

2016-08-15

Bacteriophage (phage) amplification is an attractive method for the detection of bacteria due to a narrow phage-host specificity, short amplification times, and the phages' ability to differentiate between viable and non-viable bacterial cells. The next step in phage-based bacteria detection is leveraging bioengineered phages to create low-cost, rapid, and easy-to-use detection platforms such as lateral flow assays. Our work establishes the proof-of-concept for the use of bioengineered T7 phage strains to increase the sensitivity of phage amplification-based lateral flow assays. We have demonstrated a greater than 10-fold increase in sensitivity using a phage-based protein reporter, maltose-binding protein, over the detection of replicated T7 phage viron itself, and a greater then 100-fold increase in sensitivity using a phage-based enzymatic reporter, alkaline phosphatase. This increase in sensitivity enabled us to detect 10(3)CFU/mL of Escherichia coli in broth after 7h, and by adding a filter concentration step, the ability to detect a regulatory relevant E. coli concentration of 100CFU/100mL in inoculated river water after 9h, where the current standard requires days for results. The combination of the paper fluidic format with phage-based detection provides a platform for the development of novel diagnostics that are sensitive, rapid, and easy to use. Copyright © 2016 Elsevier B.V. All rights reserved.

Application of Soil Nailing Technique for Protection and Preservation Historical Buildings

NASA Astrophysics Data System (ADS)

Kulczykowski, Marek; Przewłócki, Jarosław; Konarzewska, Bogusława

2017-10-01

Soil nailing is one of the recent in situ techniques used for soil improvement and in stabilizing slopes. The process of soil nailing consists of reinforcing the natural ground with relatively small steel bars or metal rods, grouted in the pre-drilled holes. This method has a wide range of applications for stabilizing deep excavations and steep slopes. Soil nailing has recently become a very common method of slope stabilisation especially where situated beneath or adjacent to historical buildings. Stabilisation by nails drilled into existing masonry structures such as failing retaining walls abutments, provide long term stability without demolition and rebuilding costs. Two cases of soil nailing technology aimed at stabilising slopes beneath old buildings in Poland are presented in this paper. The first concerns application of this technology to repair a retaining wall supporting the base of the dam at the historic hydroelectric power plant in Rutki. The second regards a concept of improving the slope of the Castle Hill in Sandomierz. An analysis of the slope stability for the latter case, using stabilisation technique with the piling system and soil nailing was performed. Some advantages of soil nailing especially for protection of historical buildings, are also underlined. And, the main results of an economic comparison analysis are additionally presented.

Spatial relationships among soil biota in a contaminated grassland ecosystem at Aberdeen Proving Ground, Maryland

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kuperman, R.; Williams, G.; Parmelee, R.

1995-12-31

Spatial relationships among soil nematodes and soil microorganisms were investigated in a grassland ecosystem contaminated with heavy metals in the US Army`s Aberdeen Proving Ground. The study quantified fungal and bacterial biomass, the abundance of soil protozoa, and nematodes. Geostatistical techniques were used to determine spatial distributions of these parameters and to evaluate various cross-correlations. The cross-correlations among soil biota numbers were analyzed using two methods: a cross general relative semi-variogram and an interactive graphical data representation using geostatistically estimated data distributions. Both the visualization technique and the cross general relative semi-variogram and an interactive graphical data representation using geostatisticallymore » estimated data distributions. Both the visualization technique and the cross general relative semi-variogram showed a negative correlation between the abundance of fungivore nematodes and fungal biomass, the abundance of bacterivore nematodes and bacterial biomass, the abundance of omnivore/predator nematodes and numbers of protozoa, and between numbers of protozoa and both fungal and bacterial biomass. The negative cross-correlation between soil biota and metal concentrations showed that soil fungi were particularly sensitive to heavy metal concentrations and can be used for quantitative ecological risk assessment of metal-contaminated soils. This study found that geostatistics are a useful tool for describing and analyzing spatial relationships among components of food webs in the soil community.« less

Combinaison de méthodes géophysiques pour estimer la distribution spatiale des sols affectés par l'excès d'eau

NASA Astrophysics Data System (ADS)

Chaplot, Vincent; Walter, Christian; Curmi, Pierre; Hollier-Larousse, Alain; Robain, Henri

2004-04-01

Geophysical methods have already shown their interest for the continuous characterisation of soils over landscapes, rapidly and, non-intrusively. But in bottomland areas, difficulties are encountered in relating geophysical properties to soil spatial distribution due to large variations in the depth, texture and/or water content of soils. Indeed, respective variations of these parameters can result in ambiguous geophysical responses. For example, a decrease in soil water content, which causes an increase in electrical resistivity, may be offset by an increase in soil clay content, inducing a decrease in resistivity. The objective of this study was to improve the continuous characterisation of soils affected by an excess of water by using a combination of geophysical techniques. Three techniques, the radio-magnetotelluric (RMT), the ground penetrating radar (GPR) and the electrostatic quadrupole (ESQP) were implemented along eight representative transects where soils were extensively described. The soil cover shows a succession from downslope to upslope consisting in fibric Fluvisols, gleyic Fluvisols, and Albefluvisols. None of the geophysical methods allows us to distinguish all soil limits and to estimate the geometry of soil horizons. The ESQP discriminates Fluvisols from Albefluvisols, whereas the RMT above all reveals differences in soil material thickness, which do not permit to discriminate between these soils. In complement, the GPR allows the estimation of the geometry of organic horizons and anthropic structures, such as ditches. Finally, the combination of these three techniques allows us to assess the main features of soil spatial distribution in bottomlands. To cite this article: V. Chaplot et al., C. R. Geoscience 336 (2004).

Soil nailing of a bridge fill embankment : construction report.

DOT National Transportation Integrated Search

1991-08-01

Soil nailing as an alternative lateral earth support method has recently been introduced in Oregon to build the first permanent Soil-Nailed Wall on the State's Highway System. : The soil nailing technique was used for an underpass widening to provide...

Active Distribute Temperature Sensing to Estimate Vertical Water Content Variations in a Loamy-Sandy Soil

NASA Astrophysics Data System (ADS)

Ciocca, F.; Van De Giesen, N.; Assouline, S.; Huwald, H.; Hopmans, J. W.; Lunati, I.; Parlange, M. B.

2011-12-01

Optical fibers in combination with Raman scattering measurements (Distributed Temperature Sensor: DTS) have recently become more standard for the measurement of soil temperature. A recently developed technique to measure soil moisture called Active DTS (ADTS) is investigated in this study. ADTS consists of an application of a heat pulse for a fixed duration and power along the metal sheath covering the optical fiber placed in the soil. Soil moisture can be inferred from the increased temperature measured during the heating phase and the subsequent temperature decrease during the cooling phase. We assess this technique for a loamy-sandy soil as part of a field campaign that took place during the 2011 summer at EPFL. The measurements were taken within a weighing lysimeter (2.5 m depth and 1.2 m diameter) using an optical fiber arranged in 15 loops for a total measurement length of 52 m in the top 80 cm of the soil profile. Local soil moistures were simultaneously measured using capacity-based probes. Thermocouples, wrapped around the fiber, are used to account for the effects of the insulating cover surrounding the cable. Heat pulses of various duration and power have been applied for a range of soil moistures. Measurements were taken during periods of drainage and evaporation. The accuracy of the technique for the EPFL 2011 field campaign and the experiment are discussed and the soil moisture measurements are presented.

NASA spinoffs to bioengineering and medicine

NASA Technical Reports Server (NTRS)

Rouse, D. J.; Winfield, D. L.; Canada, S. C.

1991-01-01

Through the active transfer of technology, the National Aeronautics and Space Administration (NASA) Technology Utilization (TU) Program assists private companies, associations, and government agencies to make effective use of NASA's technological resources to improve U.S. economic competitiveness and to provide societal benefit. Aerospace technology from areas such as digital image processing, space medicine and biology, microelectronics, optics and electrooptics, and ultrasonic imaging have found many secondary applications in medicine. Examples of technology spinoffs are briefly discussed to illustrate the benefits realized through adaptation of aerospace technology to solve health care problems. Successful implementation of new technologies increasingly requires the collaboration of industry, universities, and government, and the TU Program serves as the liaison to establish such collaborations with NASA. NASA technology is an important resource to support the development of new medical products and techniques that will further advance the quality of health care available in the U.S. and worldwide.

[Prevention and regeneration of barrier disturbances in occupational dermatology].

PubMed

Schürer, Nanna Y; Schwanitz, Hans J

2004-11-01

Over the past 10 years primary, secondary and tertiary prevention of occupational skin disorders has been shown to be successful, documented with appropriate statistical methods. Interventional strategies are the main features of secondary and tertiary prevention, now well-established in occupational dermatology. Primary prevention is best accomplished by health education measures, both in the form on individual counseling and seminars. This overview reviews the scientific background of hand eczema with respect to barrier damage and repair and then considers the options for individualized and focused prevention. Special anatomical features of the interdigital space and palms, as well as functional disorders, such as palmar hyperhidrosis, are discussed. The importance of barrier regeneration is considered in light of the role of an acid pH, the epidermal calcium gradient and aspects of percutaneous absorption. The effects of anti-oxidants are considered, and new bioengineering methods which rely on physiologic measuring techniques are reviewed.

Ultralight nanofibre-assembled cellular aerogels with superelasticity and multifunctionality.

PubMed

Si, Yang; Yu, Jianyong; Tang, Xiaomin; Ge, Jianlong; Ding, Bin

2014-12-16

Three-dimensional nanofibrous aerogels (NFAs) that are both highly compressible and resilient would have broad technological implications for areas ranging from electrical devices and bioengineering to damping materials; however, creating such NFAs has proven extremely challenging. Here we report a novel strategy to create fibrous, isotropically bonded elastic reconstructed (FIBER) NFAs with a hierarchical cellular structure and superelasticity by combining electrospun nanofibres and the fibrous freeze-shaping technique. Our approach causes the intrinsically lamellar deposited electrospun nanofibres to assemble into elastic bulk aerogels with tunable densities and desirable shapes on a large scale. The resulting FIBER NFAs exhibit densities of >0.12 mg cm(-3), rapid recovery from deformation, efficient energy absorption and multifunctionality in terms of the combination of thermal insulation, sound absorption, emulsion separation and elasticity-responsive electric conduction. The successful synthesis of such fascinating materials may provide new insights into the design and development of multifunctional NFAs for various applications.

3D Printing Variable Stiffness Foams Using Viscous Thread Instability

PubMed Central

Lipton, Jeffrey I.; Lipson, Hod

2016-01-01

Additive manufacturing of cellular structures has numerous applications ranging from fabrication of biological scaffolds and medical implants, to mechanical weight reduction and control over mechanical properties. Various additive manufacturing processes have been used to produce open regular cellular structures limited only by the resolution of the printer. These efforts have focused on printing explicitly designed cells or explicitly planning offsets between strands. Here we describe a technique for producing cellular structures implicitly by inducing viscous thread instability when extruding material. This process allows us to produce complex cellular structures at a scale that is finer than the native resolution of the printer. We demonstrate tunable effective elastic modulus and density that span two orders of magnitude. Fine grained cellular structures allow for fabrication of foams for use in a wide range of fields ranging from bioengineering, to robotics to food printing. PMID:27503148

Bioengineering a vaginal replacement using a small biopsy of autologous tissue.

PubMed

Dorin, Ryan P; Atala, Anthony; Defilippo, Roger E

2011-01-01

Many congenital and acquired diseases result in the absence of a normal vagina. Patients with these conditions often require reconstructive surgery to achieve satisfactory cosmesis and physiological function, and a variety of materials have been used as tissue sources. Currently employed graft materials such as collagen scaffolds and small intestine are not ideal in that they fail to mimic the physiology of normal vaginal tissue. Engineering of true vaginal tissue from a small biopsy of autologous vagina should produce a superior graft material for vaginal reconstruction. This review describes our current experience with the engineering of such tissue and its use for vaginal reconstruction in animal models. Our successful construction and implantation of neovaginas through tissue engineering techniques demonstrates the feasibility of similar endeavors in human patients. Additionally, the use of pluripotent stem cells instead of autologous tissue could provide an "off-the-shelf" tissue source for vaginal reconstruction.

Bioengineering anembryonic human trophoblast vesicles.

PubMed

Robins, Jared C; Morgan, Jeffrey R; Krueger, Paula; Carson, Sandra A

2011-02-01

Trophoblast cells in vivo form a 3-dimensional structure that promotes complex cell-to-cell interactions that cannot be studied with traditional monolayer culture. We describe a 3-dimensional trophoblast bioreactor to study cellular interactions. Nonadhesive agarose hydrogels were cast from molds using computer-assisted prototyping. Trophoblast cells were seeded into the gels for 10 days. Morphology, viability, and vesicle behavior were assessed. Trophoblast cells formed uniform spheroids. Serial sectioning on days 3, 7, and 10 revealed central vacuolization with a consistent outer rim 12.3-μ thick. The vesicle configuration has been confirmed with confocal imaging. Electron Microscopic (EM) imaging revealed its ultrastructure. The vesicles migrate across a fibronectin-coated surface and invaded basement membrane. Trophoblast cells cultured in a novel substrate-free 3-dimensional system form trophoblast vesicles. This new cell culture technique allows us to better study placental cell-to-cell interactions with the potential of forming microtissues.

Magnetically Assisted Bilayer Composites for Soft Bending Actuators.

PubMed

Jang, Sung-Hwan; Na, Seon-Hong; Park, Yong-Lae

2017-06-12

This article presents a soft pneumatic bending actuator using a magnetically assisted bilayer composite composed of silicone polymer and ferromagnetic particles. Bilayer composites were fabricated by mixing ferromagnetic particles to a prepolymer state of silicone in a mold and asymmetrically distributed them by applying a strong non-uniform magnetic field to one side of the mold during the curing process. The biased magnetic field induces sedimentation of the ferromagnetic particles toward one side of the structure. The nonhomogeneous distribution of the particles induces bending of the structure when inflated, as a result of asymmetric stiffness of the composite. The bilayer composites were then characterized with a scanning electron microscopy and thermogravimetric analysis. The bending performance and the axial expansion of the actuator were discussed for manipulation applications in soft robotics and bioengineering. The magnetically assisted manufacturing process for the soft bending actuator is a promising technique for various applications in soft robotics.

Magnetically Assisted Bilayer Composites for Soft Bending Actuators

PubMed Central

Jang, Sung-Hwan; Na, Seon-Hong; Park, Yong-Lae

2017-01-01

This article presents a soft pneumatic bending actuator using a magnetically assisted bilayer composite composed of silicone polymer and ferromagnetic particles. Bilayer composites were fabricated by mixing ferromagnetic particles to a prepolymer state of silicone in a mold and asymmetrically distributed them by applying a strong non-uniform magnetic field to one side of the mold during the curing process. The biased magnetic field induces sedimentation of the ferromagnetic particles toward one side of the structure. The nonhomogeneous distribution of the particles induces bending of the structure when inflated, as a result of asymmetric stiffness of the composite. The bilayer composites were then characterized with a scanning electron microscopy and thermogravimetric analysis. The bending performance and the axial expansion of the actuator were discussed for manipulation applications in soft robotics and bioengineering. The magnetically assisted manufacturing process for the soft bending actuator is a promising technique for various applications in soft robotics. PMID:28773007

Spectral mapping of soil organic matter

NASA Technical Reports Server (NTRS)

Kristof, S. J.; Baumgardner, M. F.; Johannsen, C. J.

1974-01-01

Multispectral remote sensing data were examined for use in the mapping of soil organic matter content. Computer-implemented pattern recognition techniques were used to analyze data collected in May 1969 and May 1970 by an airborne multispectral scanner over a 40-km flightline. Two fields within the flightline were selected for intensive study. Approximately 400 surface soil samples from these fields were obtained for organic matter analysis. The analytical data were used as training sets for computer-implemented analysis of the spectral data. It was found that within the geographical limitations included in this study, multispectral data and automatic data processing techniques could be used very effectively to delineate and map surface soils areas containing different levels of soil organic matter.

FEASIBILITY OF HYDRAULIC FRACTURING OF SOILS TO IMPROVE REMEDIAL ACTIONS

EPA Science Inventory

Hydraulic fracturing, a method of increasing fluid flow within the subsurface, should improve the effectiveness of several remedial techniques, including pump and treat, vapor extraction, bio-remediation, and soil-flushing. he technique is widely used to increase the yields of oi...

Soil and Litter Animals.

ERIC Educational Resources Information Center

Lippert, George

1991-01-01

A lesson plan for soil study utilizes the Tullgren extraction method to illustrate biological concepts. It includes background information, equipment, collection techniques, activities, and references for identification guides about soil fauna. (MCO)

Characterization of the spatial variability of soil available zinc at various sampling densities using grouped soil type information.

PubMed

Song, Xiao-Dong; Zhang, Gan-Lin; Liu, Feng; Li, De-Cheng; Zhao, Yu-Guo

2016-11-01

The influence of anthropogenic activities and natural processes involved high uncertainties to the spatial variation modeling of soil available zinc (AZn) in plain river network regions. Four datasets with different sampling densities were split over the Qiaocheng district of Bozhou City, China. The difference of AZn concentrations regarding soil types was analyzed by the principal component analysis (PCA). Since the stationarity was not indicated and effective ranges of four datasets were larger than the sampling extent (about 400 m), two investigation tools, namely F3 test and stationarity index (SI), were employed to test the local non-stationarity. Geographically weighted regression (GWR) technique was performed to describe the spatial heterogeneity of AZn concentrations under the non-stationarity assumption. GWR based on grouped soil type information (GWRG for short) was proposed so as to benefit the local modeling of soil AZn within each soil-landscape unit. For reference, the multiple linear regression (MLR) model, a global regression technique, was also employed and incorporated the same predictors as in the GWR models. Validation results based on 100 times realization demonstrated that GWRG outperformed MLR and can produce similar or better accuracy than the GWR approach. Nevertheless, GWRG can generate better soil maps than GWR for limit soil data. Two-sample t test of produced soil maps also confirmed significantly different means. Variogram analysis of the model residuals exhibited weak spatial correlation, rejecting the use of hybrid kriging techniques. As a heuristically statistical method, the GWRG was beneficial in this study and potentially for other soil properties.

Estimates of soil erosion using cesium-137 tracer models.

PubMed

Saç, M M; Uğur, A; Yener, G; Ozden, B

2008-01-01

The soil erosion was studied by 137Cs technique in Yatagan basin in Western Turkey, where there exist intensive agricultural activities. This region is subject to serious soil loss problems and yet there is not any erosion data towards soil management and control guidelines. During the soil survey studies, the soil profiles were examined carefully to select the reference points. The soil samples were collected from the slope facets in three different study areas (Kirtas, Peynirli and Kayisalan Hills). Three different models were applied for erosion rate calculations in undisturbed and cultivated sites. The profile distribution model (PDM) was used for undisturbed soils, while proportional model (PM) and simplified mass balance model (SMBM) were used for cultivated soils. The mean annual erosion rates found using PDM in undisturbed soils were 15 t ha(-1) year(-1) at the Peynirli Hill and 27 t ha(-1) year(-1) at the Kirtas Hill. With the PM and SMBM in cultivated soils at Kayişalan, the mean annual erosion rates were obtained to be 65 and 116 t ha(-1) year(-1), respectively. The results of 137Cs technique were compared with the results of the Universal Soil Loss Equation (USLE).

Novel Culturing Techniques Select for Heterotrophs and Hydrocarbon Degraders in a Subantarctic Soil

PubMed Central

van Dorst, J. M.; Hince, G.; Snape, I.; Ferrari, B. C.

2016-01-01

The soil substrate membrane system (SSMS) is a novel micro-culturing technique targeted at terrestrial soil systems. We applied the SSMS to pristine and diesel fuel spiked polar soils, along with traditional solid media culturing and culture independent 454 tag pyrosequencing to elucidate the effects of diesel fuel on the soil community. The SSMS enriched for up to 76% of the total soil diversity within high diesel fuel concentration soils, in contrast to only 26% of the total diversity for the control soils. The majority of organisms originally recovered with the SSMS were lost in the transfer to solid media, with all 300 isolates belonging to Proteobacteria, Firmicutes, Actinobacteria or Bacteroidetes, the four phyla most frequently associated with soil culturing efforts. The soils spiked with high diesel fuel concentrations exhibited reduced species richness, diversity and a selection towards heterotrophs and hydrocarbon degraders in comparison to the control soils. Based on these observations and the unusually high level of overlap in microbial taxa observed between methods, we suggest the SSMS holds potential to exploit hydrocarbon degraders and other targets within simplified bacterial systems, yet is inadequate for soil ecology and ecotoxicology studies where identifying rare oligotrophic species is paramount. PMID:27827405

[Environmental Education Units.] Soil Sampling. Stream Profiles. Tree Watching. Plant Puzzles.

ERIC Educational Resources Information Center

Minneapolis Independent School District 275, Minn.

Five of these eleven units describe methods elementary school students can use when studying soil characteristics. Soil nitrogen and water holding capacity tests are included with two techniques for measuring soil pH. Survey methods for soil organisms are suggested. The remaining pamphlets describe diverse activities associated with field…

A common soil handling technique can generate incorrect estimates of soil biota effects on plants

USDA-ARS?s Scientific Manuscript database

Several plant-soil biota (PSB) studies were recently published in high profile journals that used the suspect “mixed soil sampling” methodology. To explore the extent to which mixing field samples (i.e. employing mixed soil sample designs) can generate erroneous conclusions, we used real data to pa...

Anaerobic soil disinfestation impact on soil nutrients dynamics and nitrous oxide emissions in fresh-market tomato

USDA-ARS?s Scientific Manuscript database

Anaerobic soil disinfestation (ASD) is proposed as a pre-plant, non-chemical soil disinfestation technique to control several soilborne phytosanitary issues. Limited information is available on the impact of ASD on soil fertility, plant growth, and potential nutrient loss. The objectives of the curr...

Crop response to localized organic amendment in soils with limiting physical properties

NASA Astrophysics Data System (ADS)

Lordan, Joan; Pascual, Miquel; Fonseca, Francisco; Villar, Josep Maria; Montilla, Victor; Papió, Josep; Rufat, Josep

2013-04-01

This 2-year study evaluated the use of rice husk as a localized organic amendment in a soil with limiting physical properties. The research was conducted in a commercial peach orchard planted in 2011 using a ridge planting system. Six soil and water management treatments were evaluated in 18 experimental units, which were set up in the field using a randomized complete block design. The treatments were compared both in terms of soil physical properties and crop response. Soil amendment with rice husk was the most effective technique. It improved soil conditions (soil infiltration and soil porosity), providing a better soil environment for root activity and thereby resulted in better crop performance. Concerning growth parameters, the amended treatment presented the highest overall values without negatively affecting crop water status. These techniques were suitable for mitigating the effects of soils with limiting physical conditions. Localized applications of amendments, as proposed in this work, imply an important reduction in application rates. It is important to consider an efficient use of by-products since there is a growing interest in industrial and agronomical exploitations.

78 FR 39740 - National Institute of Biomedical Imaging and Bioengineering; Notice of Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2013-07-02

... William F. Bolger Center, Franklin Building, Conference Room 1, 9600 Newbridge Drive, Potomac, MD 20854...: The William F. Bolger Center, Franklin Building, Conference Room 1, 9600 Newbridge Drive, Potomac, MD...

78 FR 24224 - Center for Scientific Review; Notice of Closed Meetings

Federal Register 2010, 2011, 2012, 2013, 2014

2013-04-24

..., 301-435-1033, [email protected] . Name of Committee: Bioengineering Sciences & Technologies... Nos. 93.306, Comparative Medicine; 93.333, Clinical Research, 93.306, 93.333, 93.337, 93.393-93.396...

77 FR 12319 - Center for Scientific Review; Notice of Closed Meetings

Federal Register 2010, 2011, 2012, 2013, 2014

2012-02-29

... Review Special Emphasis Panel; Topics in Bioengineering Sciences. Date: March 16, 2012. Time: 11 a.m. to... Related Research Integrated Review Group; AIDS Immunology and Pathogenesis Study Section. Date: March 19...

Processing of polarimetric SAR data for soil moisture estimation over Mahantango watershed area

NASA Technical Reports Server (NTRS)

Rao, K. S.; Teng, W. L.; Wang, J. R.

1992-01-01

Microwave remote sensing technique has a high potential for measuring soil moisture due to the large contrast in dielectric constant of dry and wet soils. Recent work by Pults et al. demonstrated the use of X/C-band data for quantitative surface soil moisture extraction from Airborne Synthetic Aperture Radar (SAR) system. Similar technique was adopted using polarimetric SAR data acquired with the JPL-AIRSAR system over the Mahantango watershed area in central Pennsylvania during July 1990. The data sets reported include C-, L-, and P-bands of 10, 13, 15, and 17 July 1990.

Uncertainties in assessing tillage erosion - How appropriate are our measuring techniques?

NASA Astrophysics Data System (ADS)

Fiener, P.; Wilken, F.; Aldana-Jague, E.; Deumlich, D.; Gómez, J. A.; Guzmán, G.; Hardy, R. A.; Quinton, J. N.; Sommer, M.; Van Oost, K.; Wexler, R.

2018-03-01

Tillage erosion on arable land is a very important process leading to a net downslope movement of soil and soil constitutes. Tillage erosion rates are commonly in the same order of magnitude as water erosion rates and can be even higher, especially under highly mechanized agricultural soil management. Despite its prevalence and magnitude, tillage erosion is still understudied compared to water erosion. The goal of this study was to bring together experts using different techniques to determine tillage erosion and use the different results to discuss and quantify uncertainties associated with tillage erosion measurements. The study was performed in northeastern Germany on a 10 m by 50 m plot with a mean slope of 8%. Tillage erosion was determined after two sequences of seven tillage operations. Two different micro-tracers (magnetic iron oxide mixed with soil and fluorescent sand) and one macro-tracer (passive radio-frequency identification transponders (RFIDs), size: 4 × 22 mm) were used to directly determine soil fluxes. Moreover, tillage induced changes in topography were measured for the entire plot with two different terrestrial laser scanners and an unmanned aerial system for structure from motion topography analysis. Based on these elevation differences, corresponding soil fluxes were calculated. The mean translocation distance of all techniques was 0.57 m per tillage pass, with a relatively wide range of mean soil translocation distances ranging from 0.39 to 0.72 m per pass. A benchmark technique could not be identified as all used techniques have individual error sources, which could not be quantified. However, the translocation distances of the macro-tracers used were consistently smaller than the translocation distances of the micro-tracers (mean difference = - 26 ± 12%), which questions the widely used assumption of non-selective soil transport via tillage operations. This study points out that tillage erosion measurements, carried out under almost optimal conditions, are subject to major uncertainties that are far from negligible.