The sensitivity of numerically simulated climates to land-surface boundary conditions

NASA Technical Reports Server (NTRS)

Mintz, Y.

1982-01-01

Eleven sensitivity experiments that were made with general circulation models to see how land-surface boundary conditions can influence the rainfall, temperature, and motion fields of the atmosphere are discussed. In one group of experiments, different soil moistures or albedos are prescribed as time-invariant boundary conditions. In a second group, different soil moistures or different albedos are initially prescribed, and the soil moisture (but not the albedo) is allowed to change with time according to the governing equations for soil moisture. In a third group, the results of constant versus time-dependent soil moistures are compared.

Diversity of Archaea in Brazilian savanna soils.

PubMed

Catão, E; Castro, A P; Barreto, C C; Krüger, R H; Kyaw, C M

2013-07-01

Although the richness of Bacteria and Fungi in Cerrado' soils has been reported, here we report, for the first time, the archaeal community in Cerrado's soils. DNA extracted from soil of two distinct vegetation types, a dense subtype of sensu strict (cerrado denso) and riverbank forest (mata de galeria), was used to amplify Archaea-specific 16S rRNA gene. All of the fragments sequenced were classified as Archaea into the phylum Thaumarchaeota, predominantly affiliated to groups I.1b and I.1c. Sequences affiliated to the group I.1a were found only in the soil from riverbank forest. Soils from 'cerrado denso' had greater Archaea richness than those from 'mata de galeria' based on the richness indexes and on the rarefaction curve. β-Diversity analysis showed significant differences between the sequences from the two soil areas studied because of their different thaumarchaeal group composition. These results provide information about the third domain of life from Cerrado soils.

[Diversity of uncultured actinomycetes in saline-alkali soil from Jiuquan area of Hexi Corridor].

PubMed

Li, Hai-yun; Niu, Shi-quan; Kong, Wei-bao; Yan, Wei-ru; Geng, Hui; Han, Cai-hong; Da, Wen-yan; Zhang, Ai-mei; Zhu, Xue-tai

2015-09-01

In order to more accurately understand community structure and diversity of actinomycetes in saline-alkali soil from Jiuquan area of Hexi Corridor, the community structure and diversity from three kinds of soil samples (primary, secondary saline alkali soil and farmland soil) were analyzed using uncultured methods. The results showed that the 16S rDNA clone library of actinomycetales from the primary saline-alkali soil belonged to 19 OTUs, Micrococcineae, Propionibacterineae, Corynebacterineae, Frankineae, Pseudonocardineae and unknown groups of Actinomycetales; the 16S r DNA clone library of actinomycetales from the secondary saline-alkali soil belonged to 14 OTUs, Micrococcineae, Propionibacterineae, Corynebacterineae, Frankineae, Pseudonocardineae and unknown groups of Actinomycetales; the 16S rDNA clone library of farmland soil belonged to 7 OTUs, Micrococcineae, Propionibacterineae, Corynebacterineae, Frankineae, Pseudonocardineae and unknown groups of Actinomycetales; Micrococcineae was the common population in the three soils, and also was the dominant population in primary saline alkali soil and farmland soil. The diversity index and rarefaction curves analysis showed that actinomycetes species richness was in order of primary saline-alkali soil > secondary saline-alkali soil > farmland soil. The dilution curves of primary saline-alkali soil and secondary saline-alkali soil were not leveled off, which indicated the actinomycetes diversity in saline-alkali soil was more enriched than the actual. The rich and diverse actinomycetes resources in saline-alkali soil from Jiuquan area of Hexi Corridor provide important data on the actinomycetes ecology distribution research, exploitation and utilization in saline-alkali soil.

[Soil meso- and micro-fauna community structures in different urban forest types in Shanghai, China.

PubMed

Jin, Shi Ke; Wang, Juan Juan; Zhu, Sha; Zhang, Qi; Li, Xiang; Zheng, Wen Jing; You, Wen Hui

2016-07-01

Soil meso- and micro-fauna of four urban forest types in Shanghai were investigated in four months which include April 2014, July 2014, October 2014 and January 2015. A total of 2190 soil fauna individuals which belong to 6 phyla, 15 classes and 22 groups were collected. The dominant groups were Nematoda and Arcari, accounting for 56.0% and 21.8% of the total in terms of individual numbers respectively. The common groups were Enchytraeidae, Rotatoria, Collembola and Hymenoptera and they accounted for 18.7% of the total in terms of individual numbers. There was a significant difference (P<0.05) among soil meso- and micro-fauna density in the four urban forest types and the largest density was found in Metasequoia glyptostroboides forest, the smallest in Cinnamomum camphora forest. The largest groupe number was found in near-nature forest, the smallest was found in M. glyptostroboides forest. There was obvious seasonal dynamics in each urban forest type and green space which had larger density in autumn and larger groupe number in summer and autumn. In soil profiles, the degree of surface accumulation of soil meso- and micro-fauna in C. camphora forest was higher than in other forests and the vertical distribution of soil meso- and micro-fauna in near-nature forest was relatively homogeneous in four layers. Density-group index was ranked as: near-nature forest (6.953)> C. camphora forest (6.351)> Platanus forest (6.313)>M. glyptostroboides forest (5.910). The community diversity of soil fauna in each vegetation type could be displayed preferably by this index. It could be inferred through redundancy analysis (RDA) that the soil bulk density, organic matter and total nitrogen were the main environmental factors influencing soil meso- and micro-fauna community structure in urban forest. The positive correlations occurred between the individual number of Arcari, Enchytraeidae and soil organic matter and total nitrogen, as well as between the individual number of Diptera larvae, Rotatoria and soil water content.

[Effect of Long-Term Fertilization on Organic Nitrogen Functional Groups in Black Soil as Revealed by Synchrotron-Based X-Ray Absorption Near-Edge Structure Spectroscopy].

PubMed

Li, Hui; Gao, Qiang; Wang, Shuai; Zhu, Ping; Zhang, Jin-jing; Zhao, Yi-dong

2015-07-01

Nitrogen (N) is a common limiting nutrient in crop production. The N content of soil has been used as an important soil fertility index. Organic N is the major form of N in soil. In most agricultural surface soils, more than 90% of total N occurs in organic forms. Therefore, understanding the compositional characteristics of soil organic N functional groups can provide the scientific basis for formulating the reasonable farmland management strategies. Synchrotron radiation soft X-ray absorption near-edge structure (N K-edge XANES) spectroscopy is the most powerful tool to characterize in situ organic N functional groups compositions in soil. However, to our most knowledge, no studies have been conducted to examine the organic N functional groups compositions of soil using N K-edge XANES spectroscopy under long-term fertilization practices. Based on a long-term field experiment (started in 1990) in a black soil (Gongzhuling, Northeast China), we investigated the differences in organic N functional groups compositions in bulk soil and clay-size soil fraction among fertilization patterns using synchrotron-based N K- edge XANES spectroscopy. Composite soil samples (0-20 cm) were collected in 2008. The present study included six treatments: farmland fallow (FALL), no-fertilization control (CK), chemical nitrogen, phosphorus, and potassium fertilization (NPK), NPK in combination with organic manure (NPKM), 1.5 times of NPKM (1.5 NPKM), and NPK in combination with maize straw (NPKS). The results showed that N K-edge XANES spectra of all the treatments under study exhibited characteristic absorption peaks in the ranges of 401.2-401.6 and 402.7-403.1 eV, which were assigned as amides/amine-N and pyrrole-N, respectively. These characteristic absorption peaks were more obvious in clay-size soil fraction than in bulk soil. The results obtained from the semi-quantitative analysis of N K-edge XANES spectra indicated that the relative proportion of amides/amine-N was the highest in both bulk soil and clay-size soil fraction, and it was the most major forms in soil organic nitrogen functional groups. Compared with the FALL treatment, the relative proportion of amide/amine-N was lower whereas that of Pyrrole-N was higher in the CK treatment. In the treatments with combined chemical fertilizers and organic manure, the relative proportion of amide/amine-N decreased with increasing application rates of organic manure, while that of Pyrrole-N had an opposite trend. In bulk soil, the relative proportion of amide/amine-N was the highest for the NPKS treatment than for the other treatments. On the other hand, the relative proportion of nitrile/aromatic-N was the highest for the Fallow treatment than for the other treatments in clay-size soil fraction. It is feasible to use N K-edge XANES spectroscopy for characterizing in situ the changes of organic N functional groups in soil under different fertilization practices.

Application of acclimated sewage sludge as a bio-augmentation/bio-stimulation strategy for remediating chlorpyrifos contamination in soil with/without cadmium.

PubMed

Wang, Can; Zhou, Zhiren; Liu, Hongdan; Li, Junjie; Wang, Ying; Xu, Heng

2017-02-01

This experiment was performed to investigate the effects of acclimated sewage sludge (ASS) and sterilized ASS on the fates of chlorpyrifos (CP) in soil with or without cadmium (Cd), as well as the improvement of soil biochemical properties. Results showed that both ASS and sterilized ASS could significantly promote CP dissipation, and the groups with ASS had the highest efficiency on CP removal, whose degradation rates reached 71.3%-85.9% at the 30th day (40.4%-50.2% higher than non-sludge groups). Besides, the degradation rate of CP was not severely influenced by the existence of Cd, and the population of soil microorganism dramatically increased after adding sludge. The soil enzyme activities (dehydrogenase, acid phosphatase and FDA hydrolase activities) ranked from high to low were as follows: groups with sterilized ASS>groups with ASS>groups without sludge. Simultaneously, 16S rRNA gene sequencing revealed that ASS changed bacterial community structure and diversity in soil. In addition, alkali-hydrolyzable nitrogen and Olsen- phosphorus increased after application of sludge, indicating that the addition of ASS (or sterilized ASS) could effectively improve soil fertility. Copyright © 2016 Elsevier B.V. All rights reserved.

Probability Models Based on Soil Properties for Predicting Presence-Absence of Pythium in Soybean Roots.

PubMed

Zitnick-Anderson, Kimberly K; Norland, Jack E; Del Río Mendoza, Luis E; Fortuna, Ann-Marie; Nelson, Berlin D

2017-10-01

Associations between soil properties and Pythium groups on soybean roots were investigated in 83 commercial soybean fields in North Dakota. A data set containing 2877 isolates of Pythium which included 26 known spp. and 1 unknown spp. and 13 soil properties from each field were analyzed. A Pearson correlation analysis was performed with all soil properties to observe any significant correlation between properties. Hierarchical clustering, indicator spp., and multi-response permutation procedures were used to identify groups of Pythium. Logistic regression analysis using stepwise selection was employed to calculate probability models for presence of groups based on soil properties. Three major Pythium groups were identified and three soil properties were associated with these groups. Group 1, characterized by P. ultimum, was associated with zinc levels; as zinc increased, the probability of group 1 being present increased (α = 0.05). Pythium group 2, characterized by Pythium kashmirense and an unknown Pythium sp., was associated with cation exchange capacity (CEC) (α < 0.05); as CEC increased, these spp. increased. Group 3, characterized by Pythium heterothallicum and Pythium irregulare, were associated with CEC and calcium carbonate exchange (CCE); as CCE increased and CEC decreased, these spp. increased (α = 0.05). The regression models may have value in predicting pathogenic Pythium spp. in soybean fields in North Dakota and adjacent states.

[Community structure and seasonal change of soil micro-arthropodes in the Lower Reaches of Liaohe River Plain under different land utilization].

PubMed

Ke, Xin; Liang, Wenju; Yu, Wantai; Xie, Rongdong; Weng, Chaolian; Yang, Yiming; Yin, Wenying

2004-04-01

The data on the soil micro-arthropodes under four land utilization types (fallow, forest, upland field and paddy) in the Lower Reaches of Liaohe River Plain were collected in a period from October 2000 to October 2001. Using the community parameters of population density, group richness, diversity index and evenness, the community structure and its seasonal changes were described. There were 12 groups of soil micro-arthropodes in this region, and of the groups, Collembola and Acarina were dominant, and Diptera, Coleoptera and Hymenoptera were often seen in fallow, forest and upland field, while Collembola, Acarina and Diptera were dominant in paddy. Both land utilization and seasonal change influenced the population density, group richness and diversity index of soil micro-arthropodes. The vertical distribution in both density and group number of arthropods in soil was in the order of surface > middle > bottom.

Biotic and Abiotic Properties Mediating Plant Diversity Effects on Soil Microbial Communities in an Experimental Grassland

PubMed Central

Lange, Markus; Habekost, Maike; Eisenhauer, Nico; Roscher, Christiane; Bessler, Holger; Engels, Christof; Oelmann, Yvonne; Scheu, Stefan; Wilcke, Wolfgang; Schulze, Ernst-Detlef; Gleixner, Gerd

2014-01-01

Plant diversity drives changes in the soil microbial community which may result in alterations in ecosystem functions. However, the governing factors between the composition of soil microbial communities and plant diversity are not well understood. We investigated the impact of plant diversity (plant species richness and functional group richness) and plant functional group identity on soil microbial biomass and soil microbial community structure in experimental grassland ecosystems. Total microbial biomass and community structure were determined by phospholipid fatty acid (PLFA) analysis. The diversity gradient covered 1, 2, 4, 8, 16 and 60 plant species and 1, 2, 3 and 4 plant functional groups (grasses, legumes, small herbs and tall herbs). In May 2007, soil samples were taken from experimental plots and from nearby fields and meadows. Beside soil texture, plant species richness was the main driver of soil microbial biomass. Structural equation modeling revealed that the positive plant diversity effect was mainly mediated by higher leaf area index resulting in higher soil moisture in the top soil layer. The fungal-to-bacterial biomass ratio was positively affected by plant functional group richness and negatively by the presence of legumes. Bacteria were more closely related to abiotic differences caused by plant diversity, while fungi were more affected by plant-derived organic matter inputs. We found diverse plant communities promoted faster transition of soil microbial communities typical for arable land towards grassland communities. Although some mechanisms underlying the plant diversity effect on soil microorganisms could be identified, future studies have to determine plant traits shaping soil microbial community structure. We suspect differences in root traits among different plant communities, such as root turnover rates and chemical composition of root exudates, to structure soil microbial communities. PMID:24816860

SOIL BIOLOGY AND ECOLOGY

EPA Science Inventory

The term "Soil Biology", the study of organism groups living in soil, (plants, lichens, algae, moss, bacteria, fungi, protozoa, nematodes, and arthropods), predates "Soil Ecology", the study of interactions between soil organisms as mediated by the soil physical environment. oil ...

[Population structure of soil arthropod in different age Pinus massoniana plantations].

PubMed

Tan, Bo; Wu, Fu-zhong; Yang, Wan-qin; Zhang, Jian; Xu, Zhen-feng; Liu, Yang; Gou, Xiao-lin

2013-04-01

An investigation was conducted on the population structure of soil arthropod community in the 3-, 8-, 14-, 31-, and 40-years old Pinus massoniana plantations in the upper reaches of the Yangtze River in spring (May) and autumn (October), 2011, aimed to search for the scientific management of the plantation. A total of 4045 soil arthropods were collected, belonging to 57 families. Both the individual density and the taxonomic group number of the soil arthropod community decreased obviously with increasing soil depth, and this trend increased with increasing stand age. The dominant groups and ordinary groups of the soil arthropod community varied greatly with the stand age of P. massoniana plantation, and a significant difference (P<0.05) was observed in the individual density and taxonomic group number among different age P. massoniana plantations. In comparison with other stand age P. massoniana plantations, 3years old P. massoniana plantation had a significant difference in the structure and diversity of soil arthropod community, and the similarity index of the soil arthropod community was lower. The individual density, taxonomic group number, and diversity of soil arthropod community were the highest in 8-years old P. massoniana plantation, and then, decreased obviously with increasing stand age. It was suggested that the land fertility of the P. massoniana plantations could be degraded with increasing stand age, and it would be appropriate to make artificial regulation and restoration in 8-years old P. massoniana plantation.

[Distribution pattern of meso-micro soil fauna in Eucalyptus grandis plantation].

PubMed

Huang, Yumei; Zhang, Jian; Yang, Wanqin

2006-12-01

In this paper, meso-micro soil fauna were extracted and collected by Baermann's and Tullgren' s method, and their distribution pattern in the Eucalyptus grandis plantation of Hongya County, Sichuan Province was studied. A total of 13 550 specimens were collected, belonging to 6 phyla, 13 classes, and 26 orders. Acarina, Nematoda, Collembola were the dominant groups, and Enchytraeidae was the frequent one. The group and individual numbers of meso-micro soil fauna varied with seasons, being the maximum in autumn or winter, fewer in summer, and the minimum in spring. The density of meso-micro soil fauna in soil profile decreased rapidly with increasing soil depth, but a converse distribution was observed from time to time in 5 - 10 cm and 10 - 15 cm soil layers. The meso-micro soil fauna collected by Baermann's and Tullgren's method had a density of 3. 333 x 10(3) - 2. 533 x 10(5) ind x m(-2) and 1.670 x 10(2) - 2.393 x 10(5) ind x m(-2), respectively, and the decreasing rate of the density with the increase of soil depth was higher for those collected by Tullgren's method. The density-group index of meso-micro soil fauna in the E. grandis plantation was the lowest in spring, but the highest in autumn or summer. There were no significant differences in the density of meso-micro soil fauna and in the density-group index between E. grandis plantation and Quercus acutissima secondary forest.

[Community traits of soil fauna in forestlands converted from cultivated lands in limestone red soil region of Ruichang, Jiangxi Province of China].

PubMed

Li, Tao; Liu, Yuan-Qiug; Guo, Sheng-Mao; Ke, Guo-Qing; Zhang, Zhao; Xiao, Xu-Bao; Liu, Wu

2012-04-01

This paper studied the variations of the community composition and individuals' number of soil fauna in limestone red soil region of Ruichang, Jiangxi Province after six years of converting cultivated lands into forestlands. Three converted forestlands, including the lands of mixed multiple-species forest, bamboo-broadleaved forest, and tree-seedling integration, were selected as test objects, with cultivated lands as the comparison. A total of 34 orders, 17 classes, and 6 phyla of soil fauna were observed in the converted forestlands. The dominant group was Nematoda, accounting for 86.7% of the total, whereas Acarina, Enchytraeidae, and Collembola were the common groups. In the cultivated lands, soil fauna had 21 orders, 10 classes, and 5 phyla. The dominant group was also Nematoda, accounting 86.7% of the total, and Acarina and Enchytraeidae were the common groups. In the converted forestlands, the group number of rare species was greater than that in the cultivated lands (30 vs. 18), and, except in winter, the group number and average density were significantly higher than those in the cultivated lands (P < 0.05). The vertical distribution of soil fauna in the soil profiles showed an obvious surface accumulation, which was more apparent in converted forestlands than in cultivated lands, and the individuals' number had significant differences between the surface (0-5 cm) layer and the 5-10 cm and 10-15 cm layers (P < 0.01) for both the converted forestlands and the cultivated lands. The group number of soil fauna in the converted forestlands had a seasonal variation ranked in the order of summer > autumn > spring > winter, and there was a significant difference between summer-autumn and spring-winter. The average density of the soil fauna also had a seasonal variation but ranked as autumn > summer > spring > winter, and the differences among the seasons were significant (P < 0.05). The biodiversity index of soil fauna was significantly higher in converted forestlands than in cultivated lands, and was the highest in mixed multiple-species forestland and the least in tree-seedling integration land.

Soil Fluxomics: Disentangling Microbial Group Specific Metabolism by Modeling of 13C-Incorporation into PLFAs

NASA Astrophysics Data System (ADS)

Apostel, C.; Kuzyakov, Y.; Dippold, M. A.

2016-12-01

Soils are the largest terrestrial C sinks and microorganisms are the most important drivers of organic matter (OM) dynamics in soils: C allocation to ana- or catabolism in microbial cells is the decisive step, whether C gets oxidized to CO2 or whether it is allocated to microbial biomass, which, after cell death can be stabilized in soils. The metabolic parameter describing the ratio between the two fluxes is the carbon use efficiency (CUE), which can be assessed by position-specific labeling followed by metabolic flux modelling. However, to disentangle the single microbial groups' contribution to the bulk soil CUE, a tracing of individual groups metabolism is necessary. We assessed short-term (3 and 10 days) transformations of monosaccharides by adding position-specifically 13C labeled glucose to soil in a field experiment. Incorporation of 13C in the microbial PLFAs enabled us to distinguish individual microbial groups metabolic fluxes and compare their C-utilization efficiency using a quantitative C-flux model. The position-specific pattern in PLFAs revealed two sets of microorganisms: one metabolized glucose mainly by glycolysis and the other mainly by the pentose-phosphate pathway, which results in a higher CUE. Both of those sets included prokaryotic as well as eukaryotic microorganisms. This demonstrates that phylogenetic grouping is not decisive for the metabolic behavior of a microbial group and that the contribution of individual group members to the soil C fluxes cannot be concluded from their phylogeny.

Intensive agriculture reduces soil biodiversity across Europe.

PubMed

Tsiafouli, Maria A; Thébault, Elisa; Sgardelis, Stefanos P; de Ruiter, Peter C; van der Putten, Wim H; Birkhofer, Klaus; Hemerik, Lia; de Vries, Franciska T; Bardgett, Richard D; Brady, Mark Vincent; Bjornlund, Lisa; Jørgensen, Helene Bracht; Christensen, Sören; Hertefeldt, Tina D'; Hotes, Stefan; Gera Hol, W H; Frouz, Jan; Liiri, Mira; Mortimer, Simon R; Setälä, Heikki; Tzanopoulos, Joseph; Uteseny, Karoline; Pižl, Václav; Stary, Josef; Wolters, Volkmar; Hedlund, Katarina

2015-02-01

Soil biodiversity plays a key role in regulating the processes that underpin the delivery of ecosystem goods and services in terrestrial ecosystems. Agricultural intensification is known to change the diversity of individual groups of soil biota, but less is known about how intensification affects biodiversity of the soil food web as a whole, and whether or not these effects may be generalized across regions. We examined biodiversity in soil food webs from grasslands, extensive, and intensive rotations in four agricultural regions across Europe: in Sweden, the UK, the Czech Republic and Greece. Effects of land-use intensity were quantified based on structure and diversity among functional groups in the soil food web, as well as on community-weighted mean body mass of soil fauna. We also elucidate land-use intensity effects on diversity of taxonomic units within taxonomic groups of soil fauna. We found that between regions soil food web diversity measures were variable, but that increasing land-use intensity caused highly consistent responses. In particular, land-use intensification reduced the complexity in the soil food webs, as well as the community-weighted mean body mass of soil fauna. In all regions across Europe, species richness of earthworms, Collembolans, and oribatid mites was negatively affected by increased land-use intensity. The taxonomic distinctness, which is a measure of taxonomic relatedness of species in a community that is independent of species richness, was also reduced by land-use intensification. We conclude that intensive agriculture reduces soil biodiversity, making soil food webs less diverse and composed of smaller bodied organisms. Land-use intensification results in fewer functional groups of soil biota with fewer and taxonomically more closely related species. We discuss how these changes in soil biodiversity due to land-use intensification may threaten the functioning of soil in agricultural production systems. © 2014 John Wiley & Sons Ltd.

VARIABLE CHARGE SOILS: MINERALOGY AND CHEMISTRY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Van Ranst, Eric; Qafoku, Nikolla; Noble, Andrew

2016-09-19

Soils rich in particles with amphoteric surface properties in the Oxisols, Ultisols, Alfisols, Spodosols and Andisols orders (1) are considered to be variable charge soils (2) (Table 1). The term “variable charge” is used to describe organic and inorganic soil constituents with reactive surface groups whose charge varies with pH and ionic concentration and composition of the soil solution. Such groups are the surface carboxyl, phenolic and amino functional groups of organic materials in soils, and surface hydroxyl groups of Fe and Al oxides, allophane and imogolite. The hydroxyl surface groups are also present on edges of some phyllosilicate mineralsmore » such as kaolinite, mica, and hydroxyl-interlayered vermiculite. The variable charge is developed on the surface groups as a result of adsorption or desorption of ions that are constituents of the solid phase, i.e., H+, and the adsorption or desorption of solid-unlike ions that are not constituents of the solid phase. Highly weathered soils and subsoils (e.g., Oxisols and some Ultisols, Alfisols and Andisols) may undergo isoelectric weathering and reach a “zero net charge” stage during their development. They usually have a slightly acidic to acidic soil solution pH, which is close to either the point of zero net charge (PZNC) (3) or the point of zero salt effect (PZSE) (3). They are characterized by high abundances of minerals with a point of zero net proton charge (PZNPC) (3) at neutral and slightly basic pHs; the most important being Fe and Al oxides and allophane. Under acidic conditions, the surfaces of these minerals are net positively charged. In contrast, the surfaces of permanent charge phyllosilicates are negatively charged regardless of ambient conditions. Variable charge soils therefore, are heterogeneous charge systems.« less

Plant Diversity Surpasses Plant Functional Groups and Plant Productivity as Driver of Soil Biota in the Long Term

PubMed Central

Eisenhauer, Nico; Milcu, Alexandru; Sabais, Alexander C. W.; Bessler, Holger; Brenner, Johanna; Engels, Christof; Klarner, Bernhard; Maraun, Mark; Partsch, Stephan; Roscher, Christiane; Schonert, Felix; Temperton, Vicky M.; Thomisch, Karolin; Weigelt, Alexandra; Weisser, Wolfgang W.; Scheu, Stefan

2011-01-01

Background One of the most significant consequences of contemporary global change is the rapid decline of biodiversity in many ecosystems. Knowledge of the consequences of biodiversity loss in terrestrial ecosystems is largely restricted to single ecosystem functions. Impacts of key plant functional groups on soil biota are considered to be more important than those of plant diversity; however, current knowledge mainly relies on short-term experiments. Methodology/Principal Findings We studied changes in the impacts of plant diversity and presence of key functional groups on soil biota by investigating the performance of soil microorganisms and soil fauna two, four and six years after the establishment of model grasslands. The results indicate that temporal changes of plant community effects depend on the trophic affiliation of soil animals: plant diversity effects on decomposers only occurred after six years, changed little in herbivores, but occurred in predators after two years. The results suggest that plant diversity, in terms of species and functional group richness, is the most important plant community property affecting soil biota, exceeding the relevance of plant above- and belowground productivity and the presence of key plant functional groups, i.e. grasses and legumes, with the relevance of the latter decreasing in time. Conclusions/Significance Plant diversity effects on biota are not only due to the presence of key plant functional groups or plant productivity highlighting the importance of diverse and high-quality plant derived resources, and supporting the validity of the singular hypothesis for soil biota. Our results demonstrate that in the long term plant diversity essentially drives the performance of soil biota questioning the paradigm that belowground communities are not affected by plant diversity and reinforcing the importance of biodiversity for ecosystem functioning. PMID:21249208

Ammonia oxidation is not required for growth of Group 1.1c soil Thaumarchaeota.

PubMed

Weber, Eva B; Lehtovirta-Morley, Laura E; Prosser, James I; Gubry-Rangin, Cécile

2015-03-01

Thaumarchaeota are among the most abundant organisms on Earth and are ubiquitous. Within this phylum, all cultivated representatives of Group 1.1a and Group 1.1b Thaumarchaeota are ammonia oxidizers, and play a key role in the nitrogen cycle. While Group 1.1c is phylogenetically closely related to the ammonia-oxidizing Thaumarchaeota and is abundant in acidic forest soils, nothing is known about its physiology or ecosystem function. The goal of this study was to perform in situ physiological characterization of Group 1.1c Thaumarchaeota by determining conditions that favour their growth in soil. Several acidic grassland, birch and pine tree forest soils were sampled and those with the highest Group 1.1c 16S rRNA gene abundance were incubated in microcosms to determine optimal growth temperature, ammonia oxidation and growth on several organic compounds. Growth of Group 1.1c Thaumarchaeota, assessed by qPCR of Group 1.1c 16S rRNA genes, occurred in soil, optimally at 30°C, but was not associated with ammonia oxidation and the functional gene amoA could not be detected. Growth was also stimulated by addition of organic nitrogen compounds (glutamate and casamino acids) but not when supplemented with organic carbon alone. This is the first evidence for non-ammonia oxidation associated growth of Thaumarchaeota in soil. © FEMS 2015.

[Characteristics of ground-dwelling soil macro-arthropod communities in a biodiversity monitoring plot of black soil cropland, northeastern China].

PubMed

Liu, Jie; Gao, Mie Xiang; Wu, Dong Hui

2017-12-01

Agro-ecosystem is an important component of terrestrial ecosystems and it is one of the key areas of global ecological and environmental studies. A 16 hm 2 permanent plot in black soil cropland was built to study the community structure of soil biodiversity in typical black soil region in Northeast China. Pitfall trap was used to investigate the ground-dwelling soil macro-arthropods from August to October 2015 in accordance with the three crop growth stages: whirling stage, silking stage, and milk stage. A total of 5284 ground-dwelling soil macro-arthropods belonging to 47 species were captured sorted into 3 classes, 12 orders, 32 families. 3 dominant groups and 11 common groups were found. Phytophages and Omnivores were dominant groups. The individuals and species numbers of ground-dwelling soil macro-arthropods had significant changes with the vegetative growth period. The maximum values of the Shannon index, Margalef index, Pielou index of soil macro-arthropods all appeared in September, but the maximum dominant index appeared in August. From the variation coefficient (CV) and spatial interpolation of different species, it could be seen that there was heterogeneity in the horizontal direction of the ground-dwelling soil macro-arthropod communities. Regarding the relationships between the ground-dwelling soil macro-arthropod communities and soil environmental factors including soil pH, soil organic matter, total nitrogen and soil water content, the bivariate correlation analysis showed there was no significant correlation between them. Results of canonical correspondence analysis (CCA) further indicated that the dominant and common groups were adaptable to environmental factors and widely distributed in the study area. The results showed that the species richness of ground-dwelling soil macro-arthropods was very high in cropland, and the dynamic of soil arthropod's composition and spatial distribution pattern in diffe-rent crop growth stages were significantly changed. It was indicated that biodiversity plot monitoring of black soil cropland had become important means to solve the formation and maintenance mechanism of soil fauna community through large-scale and long-term investigation.

Simultaneous degradation of toxic refractory organic pesticide and bioelectricity generation using a soil microbial fuel cell.

PubMed

Cao, Xian; Song, Hai-Liang; Yu, Chun-Yan; Li, Xian-Ning

2015-01-01

In this study, the soil microbial fuel cells (MFCs) were constructed in the topsoil contaminated with toxic refractory organic pesticide, hexachlorobenzene (HCB). The performance of electricity generation and HCB degradation in the soil-MFCs were investigated. The HCB degradation pathway was analyzed based on the determination of degradation products and intermediates. Experimental results showed that the HCB removal efficiencies in the three groups (soil MFCs group, open circuit control group and no adding anaerobic sludge blank group) were 71.15%, 52.49% and 38.92%, respectively. The highest detected power density was 77.5 mW/m(2) at the external resistance of 1000 Ω. HCB was degraded via the reductive dechlorination pathway in the soil MFC under anaerobic condition. The existence of the anode promoted electrogenic bacteria to provide more electrons to increase the metabolic reactions rates of anaerobic bacteria was the main way which could promote the removal efficiencies of HCB in soil MFC. Copyright © 2015 Elsevier Ltd. All rights reserved.

Quantification of soil mapping by digital analysis of LANDSAT data. [Clinton County, Indiana

NASA Technical Reports Server (NTRS)

Kirschner, F. R.; Kaminsky, S. A.; Hinzel, E. J.; Sinclair, H. R.; Weismiller, R. A.

1977-01-01

Soil survey mapping units are designed such that the dominant soil represents the major proportion of the unit. At times, soil mapping delineations do not adequately represent conditions as stated in the mapping unit descriptions. Digital analysis of LANDSAT multispectral scanner (MSS) data provides a means of accurately describing and quantifying soil mapping unit composition. Digital analysis of LANDSAT MSS data collected on 9 June 1973 was used to prepare a spectral soil map for a 430-hectare area in Clinton County, Indiana. Fifteen spectral classes were defined, representing 12 soil and 3 vegetation classes. The 12 soil classes were grouped into 4 moisture regimes based upon their spectral responses; the 3 vegetation classes were grouped into one all-inclusive class.

Soil microcosm for testing the effects of chemical pollutants on soil fauna communities and trophic structure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Parmelee, R.W.; Wentsel, R.S.; Phillips, C.T.

1993-08-01

A microcosm technique is presented that uses community and trophic-level analysis of soil nematodes and microarthropods to determine the effects of chemicals on soil systems. Forest soil was treated with either copper, p-nitrophenol, or trinitrotoluene. Nematodes were sorted into bacterivore, fungivore, herbivore, and omnivore-predator trophic groups, and a hatchling category. Microarthropods were sorted to the acarine suborders Prostigmata, Mesostigmata, and Oribatida; the insectan order Collembola; and a miscellaneous group. Omnivore-predator nematodes and meso-stigmatid and oribatid mites were the groups most sensitive to copper and were significantly reduced at levels as low as 100 [mu]g g[sup [minus]1] copper. Total nematode andmore » microarthropod numbers declined above 200 [mu]g g[sup [minus]1] copper. Trophic structure analysis suggested that high sensitivity of nematode predators to intermediate levels of copper reduced predation on herbivore nematodes and resulted in greater numbers of nematodes compared to controls. p-Nitrophenol was very toxic to the nematode community, and all trophic groups were significantly reduced above 20 [mu]g g[sup [minus]1]. However, there was no effect of p-nitrophenol on microarthropods. Trinitrotoluene had no significant negative effect on total abundance of either groups of soil fauna, but oribatids were significantly reduced at 200 [mu]g g[sup [minus]1]. The results demonstrated that soil nematodes and microarthropods were sensitive indicators of environmental contaminants and that trophic-structure and community analysis has the potential to detect more subtle indirect effects of chemicals on soil food-web structure. The authors conclude that microcosms with field communities of soil microfauna offer high resolution of the ecotoxicological effects of chemicals in complex soil systems.« less

Using multi-approaches to investigate the effects of land cover on runoff and soil erosion in the Loess Plateau of China

NASA Astrophysics Data System (ADS)

Gao, G.; Fu, B.; Liu, Y.; Wang, Y.

2012-12-01

This study used the in-situ measurement, model simulation and radioisotope tracing methods to investigate the effects of land cover on runoff and soil erosion at plot and hillslope scales in the Loess Plateau of China. Three runoff plot groups covered by sparse young trees (Group 1), native shrubs (Group 2) and dense tussock (Group 3) with different revegetation time were established in the Yangjuangou catchment of Loess Plateau. Greater runoff was produced in plot groups (Group 2 and Group 3) with higher vegetation cover and longer restoration time as a result of soil compaction processes. Both of the runoff coefficient and soil loss rate decreased with increasing plot length in Group 2 and Group 3 plots. The runoff coefficient increased with plot length in Group 1 plots located at the early stage of revegetation, and the soil loss rates increased over an area threshold. Therefore, the effect of scale on runoff and soil erosion was dependent on restoration extent. The antecedent moisture condition (AMC) was explicitly incorporated in runoff production and initial abstraction of the SCS-CN model, and the direct effect of runoff on event soil loss was considered in the RUSLE model by adopting a rainfall-runoff erosivity factor. The modified SCS-CN and RUSLE models were coupled to link rainfall-runoff-erosion modeling. The modified SCS-CN model was accurate in predicting event runoff from the three plot groups with Nash-Sutcliffe model efficiency (EF) over 0.85, and the prediction accuracy of the modified RUSLE model was satisfactory with EF values being over 0.70. The 137Cs tracing technique was used to examine soil erosion under different land uses and land-use combinations. The results show that the order of erosion rate in different land uses increases sequentially from mature forest to grass to young forest to orchard to terrace crop. The land-use combinations of 'grass (6 years old) + mature forest (25 years old) + grass (25 years old)' and 'grass (6 years old) + young forest (6 years old) + mature forest (25 years old) + grass (25 years old)' are better for soil erosion control, lowering soil erosion amount by 42% compared with a mixtures of 'grass (6 years old) and shrub (6 years old)'. This study indicates that land cover type/pattern, vegetation cover, soil property, restoration time and scale effect as well as stand condition all contribute to the complex hydrological effects of restoring vegetation in the Loess Plateau. Each approach has its own advantages and limitations. Appropriate method should be chosen for specific purpose and study scale. It is better that the results from different approach can be checked with each other.

Geochemical variability of natural soils and reclaimed minespoil soils in the San Juan Basin, New Mexico

USGS Publications Warehouse

Gough, L.P.; Severson, R.C.

1981-01-01

An inventory of total-and extractable-element concentrations in soils was made for three areas of the San Juan Basin in New Mexico: (1) the broad area likely to be affected by energy-related development. (2) an area of soils considered to have potential for use as topsoil in mined-land reclamation. and (3) an area of the San Juan coal mine that has been regraded. topsoiled, and revegetated. Maps made of concentrations of 16 elements in area 1 soils show no gradational pattern across the region. Further. these maps do not correspond to those showing geology or soil types. Sodic or saline problems, and a possible but unproven deficiency of zinc available to plants. may make some of the soils in this area undesirable for use as topsoil in mined-land reclamation. Taxonomic great groups of soil in this area cannot be distinguished because each great group tends to have a large within-group variability if compared to the between-group variability. In area 2 the major soils sampled were of the Sheppard. Shiprock. and Doak association. These soils are quite uniform in chemical composition and are not greatly saline or sodic. As in area 1 soils. zinc deficiency may cause a problem in revegetating most of these soils. It is difficult to distinguish soil taxonomic families by using their respective chemical compositions. because of small between-family variability. Topsoil from a reclaimed area of the San Juan mine (area 3) most closely resembles the chemical composition of natural C horizons of soil from area 1. Spoil material that has not been topsoiled is likely to cause sodic-and saline-related problems in revegetation and may cause boron toxicity in plants. Topsoiling has apparently ameliorated these potential problems for plant growth on mine spoil. Total and extractable concentrations for elements and other parameters for each area of the San Juan Basin provide background information for the evaluation of the chemical quality of soils in each area.

Retention of silver nano-particles and silver ions in calcareous soils: Influence of soil properties.

PubMed

Rahmatpour, Samaneh; Shirvani, Mehran; Mosaddeghi, Mohammad R; Bazarganipour, Mehdi

2017-05-15

The rapid production and application of silver nanoparticles (AgNPs) have led to significant release of AgNPs into the terrestrial environments. Once released into the soil, AgNPs could enter into different interactions with soil particles which play key roles in controlling the fate and transport of these nanoparticles. In spite of that, experimental studies on the retention of AgNPs in soils are very scarce. Hence, the key objective of this research was to find out the retention behavior of AgNPs and Ag(I) ions in a range of calcareous soils. A second objective was to determine the extent to which the physico-chemical properties of the soils influence the Ag retention parameters. To this end, isothermal batch experiments were used to determine the retention of Poly(vinylpyrrolidinone)-capped AgNPs (PVP-AgNPs) and Ag(I) ions by nine calcareous soils with a diversity of physico-chemical properties. The results revealed that the retention data for both PVP-AgNPs and Ag(I) ions were well described by the classical Freundlich and Langmuir isothermal equations. The retention of PVP-AgNPs and Ag(I) ions was positively correlated to clay and organic carbon (OC) contents as well as electrical conductivity (EC), pH, and cation exchange capacity (CEC) of the soils. Due to multicolinearity among the soil properties, principal component analysis (PCA) was used to group the soil properties which affect the retention of PVP-AgNPs and Ag(I) ions. Accordingly, we identified two groups of soil properties controlling retention of PVP-AgNPs and Ag(I) ions in the calcareous soils. The first group comprised soil solid phase parameters like clay, OC, and CEC, which generally control hetero-aggregation and adsorption reactions and the second group included soil solution variables such as EC and pH as well as Cl - and Ca 2+ concentrations, which are supposed to mainly affect homo-aggregation and precipitation reactions. Copyright © 2017. Published by Elsevier Ltd.

Bacterial colonization of a fumigated alkaline saline soil.

PubMed

Bello-López, Juan M; Domínguez-Mendoza, Cristina A; de León-Lorenzana, Arit S; Delgado-Balbuena, Laura; Navarro-Noya, Yendi E; Gómez-Acata, Selene; Rodríguez-Valentín, Analine; Ruíz-Valdiviezo, Victor M; Luna-Guido, Marco; Verhulst, Nele; Govaerts, Bram; Dendooven, Luc

2014-07-01

After chloroform fumigating an arable soil, the relative abundance of phylotypes belonging to only two phyla (Actinobacteria and Firmicutes) and two orders [Actinomycetales and Bacillales (mostly Bacillus)] increased in a subsequent aerobic incubation, while it decreased for a wide range of bacterial groups. It remained to be seen if similar bacterial groups were affected when an extreme alkaline saline soil was fumigated. Soil with electrolytic conductivity between 139 and 157 dS m(-1), and pH 10.0 and 10.3 was fumigated and the bacterial community structure determined after 0, 1, 5 and 10 days by analysis of the 16S rRNA gene, while an unfumigated soil served as control. The relative abundance of the Firmicutes increased in the fumigated soil (52.8%) compared to the unfumigated soil (34.2%), while that of the Bacteroidetes decreased from 16.2% in the unfumigated soil to 8.8% in the fumigated soil. Fumigation increased the relative abundance of the genus Bacillus from 14.7% in the unfumigated soil to 25.7%. It was found that phylotypes belonging to the Firmicutes, mostly of the genus Bacillus, were dominant in colonizing the fumigated alkaline saline as found in the arable soil, while the relative abundance of a wide range of bacterial groups decreased.

Some aspects of remediation of contaminated soils

NASA Astrophysics Data System (ADS)

Bech, Jaume; Korobova, Elena; Abreu, Manuela; Bini, Claudio; Chon, Hyo-Taek; Pérez-Sirvent, Carmen; Roca, Núria

2014-05-01

Soils are essential components of the environment, a limited precious and fragile resource, the quality of which should be preserved. The concentration, chemical form and distribution of potential harmful elements in soils depends on parent rocks, weathering, soil type and soil use. However, their concentration can be altered by mismanagement of industrial and mining activities, energy generation, traffic increase, overuse of agrochemicals, sewage sludge and waste disposal, causing contamination, environmental problems and health concerns. Heavy metals, some metalloids and radionuclides are persistent in the environment. This persistence hampers the cost/efficiency of remediation technologies. The choice of the most appropriate soil remediation techniques depends of many factors and essentially of the specific site. This contribution aims to offer an overview of the main remediation methods in contaminated soils. There are two main groups of technologies: the first group dealing with containment and confinement, minimizing their toxicity, mobility and bioavailability. Containment measures include covering, sealing, encapsulation and immobilization and stabilization. The second group, remediation with decontamination, is based on the remotion, clean up and/or destruction of contaminants. This group includes mechanical procedures, physical separations, chemical technologies such as soil washing with leaching or precipitation of harmful elements, soil flushing, thermal treatments and electrokinetic technologies. There are also two approaches of biological nature: bioremediation and phytoremediation. Case studies from Chile, Ecuador, Italy, Korea, Peru, Portugal, Russia and Spain, will be discussed in accordance with the time available.

An Integrated Insight into the Relationship between Soil Microbial Community and Tobacco Bacterial Wilt Disease

PubMed Central

Yang, Hongwu; Li, Juan; Xiao, Yunhua; Gu, Yabing; Liu, Hongwei; Liang, Yili; Liu, Xueduan; Hu, Jin; Meng, Delong; Yin, Huaqun

2017-01-01

The soil microbial communities play an important role in plant health, however, the relationship between the below-ground microbiome and above-ground plant health remains unclear. To reveal such a relationship, we analyzed soil microbial communities through sequencing of 16S rRNA gene amplicons from 15 different tobacco fields with different levels of wilt disease in the central south part of China. We found that plant health was related to the soil microbial diversity as plants may benefit from the diverse microbial communities. Also, those 15 fields were grouped into ‘healthy’ and ‘infected’ samples based upon soil microbial community composition analyses such as unweighted paired-group method with arithmetic means (UPGMA) and principle component analysis, and furthermore, molecular ecological network analysis indicated that some potential plant-beneficial microbial groups, e.g., Bacillus and Actinobacteria could act as network key taxa, thus reducing the chance of plant soil-borne pathogen invasion. In addition, we propose that a more complex soil ecology network may help suppress tobacco wilt, which was also consistent with highly diversity and composition with plant-beneficial microbial groups. This study provides new insights into our understanding the relationship between the soil microbiome and plant health. PMID:29163453

7 CFR 658.5 - Criteria.

Code of Federal Regulations, 2011 CFR

2011-01-01

... information from several sources including national cooperative soil surveys or other acceptable soil surveys, NRCS field office technical guides, soil potential ratings or soil productivity ratings, land capability classifications, and important farmland determinations. Based on this information, groups of soils...

7 CFR 658.5 - Criteria.

Code of Federal Regulations, 2010 CFR

2010-01-01

... information from several sources including national cooperative soil surveys or other acceptable soil surveys, NRCS field office technical guides, soil potential ratings or soil productivity ratings, land capability classifications, and important farmland determinations. Based on this information, groups of soils...

Estimating Soil Organic Carbon Stocks and Spatial Patterns with Statistical and GIS-Based Methods

PubMed Central

Zhi, Junjun; Jing, Changwei; Lin, Shengpan; Zhang, Cao; Liu, Qiankun; DeGloria, Stephen D.; Wu, Jiaping

2014-01-01

Accurately quantifying soil organic carbon (SOC) is considered fundamental to studying soil quality, modeling the global carbon cycle, and assessing global climate change. This study evaluated the uncertainties caused by up-scaling of soil properties from the county scale to the provincial scale and from lower-level classification of Soil Species to Soil Group, using four methods: the mean, median, Soil Profile Statistics (SPS), and pedological professional knowledge based (PKB) methods. For the SPS method, SOC stock is calculated at the county scale by multiplying the mean SOC density value of each soil type in a county by its corresponding area. For the mean or median method, SOC density value of each soil type is calculated using provincial arithmetic mean or median. For the PKB method, SOC density value of each soil type is calculated at the county scale considering soil parent materials and spatial locations of all soil profiles. A newly constructed 1∶50,000 soil survey geographic database of Zhejiang Province, China, was used for evaluation. Results indicated that with soil classification levels up-scaling from Soil Species to Soil Group, the variation of estimated SOC stocks among different soil classification levels was obviously lower than that among different methods. The difference in the estimated SOC stocks among the four methods was lowest at the Soil Species level. The differences in SOC stocks among the mean, median, and PKB methods for different Soil Groups resulted from the differences in the procedure of aggregating soil profile properties to represent the attributes of one soil type. Compared with the other three estimation methods (i.e., the SPS, mean and median methods), the PKB method holds significant promise for characterizing spatial differences in SOC distribution because spatial locations of all soil profiles are considered during the aggregation procedure. PMID:24840890

Ammonia oxidation is not required for growth of Group 1.1c soil Thaumarchaeota

PubMed Central

Weber, Eva B.; Lehtovirta-Morley, Laura E.; Prosser, James I.; Gubry-Rangin, Cécile

2015-01-01

Thaumarchaeota are among the most abundant organisms on Earth and are ubiquitous. Within this phylum, all cultivated representatives of Group 1.1a and Group 1.1b Thaumarchaeota are ammonia oxidizers, and play a key role in the nitrogen cycle. While Group 1.1c is phylogenetically closely related to the ammonia-oxidizing Thaumarchaeota and is abundant in acidic forest soils, nothing is known about its physiology or ecosystem function. The goal of this study was to perform in situ physiological characterization of Group 1.1c Thaumarchaeota by determining conditions that favour their growth in soil. Several acidic grassland, birch and pine tree forest soils were sampled and those with the highest Group 1.1c 16S rRNA gene abundance were incubated in microcosms to determine optimal growth temperature, ammonia oxidation and growth on several organic compounds. Growth of Group 1.1c Thaumarchaeota, assessed by qPCR of Group 1.1c 16S rRNA genes, occurred in soil, optimally at 30°C, but was not associated with ammonia oxidation and the functional gene amoA could not be detected. Growth was also stimulated by addition of organic nitrogen compounds (glutamate and casamino acids) but not when supplemented with organic carbon alone. This is the first evidence for non-ammonia oxidation associated growth of Thaumarchaeota in soil. PMID:25764563

Acid-base properties of humic substances from composted and thermally-dried sewage sludges and amended soils as determined by potentiometric titration and the NICA-Donnan model.

PubMed

Fernández, José M; Plaza, César; Senesi, Nicola; Polo, Alfredo

2007-09-01

The acid-base properties of humic acids (HAs) and fulvic acids (FAs) isolated from composted sewage sludge (CS), thermally-dried sewage sludge (TS), soils amended with either CS or TS at a rate of 80 t ha(-1)y(-1) for 3y and the corresponding unamended soil were investigated by use of potentiometric titrations. The non-ideal competitive adsorption (NICA)-Donnan model for a bimodal distribution of proton binding sites was fitted to titration data by use of a least-squares minimization method. The main fitting parameters of the NICA-Donnan model obtained for each HA and FA sample included site densities, median affinity constants and widths of affinity distributions for proton binding to low and high affinity sites, which were assumed to be, respectively, carboxylic- and phenolic-type groups. With respect to unamended soil HA and FA, the HAs and FAs from CS, and especially TS, were characterized by smaller acidic functional group contents, larger proton binding affinities of both carboxylic- and phenolic-type groups, and smaller heterogeneity of carboxylic and phenolic-type groups. Amendment with CS or TS led to a decrease of acidic functional group contents and a slight increase of proton binding affinities of carboxylic- and phenolic-type groups of soil HAs and FAs. These effects were more evident in the HA and FA fractions from CS-amended soil than in those from TS-amended soil.

Soil profiles' development and differentiation as revealed by their magnetic signal

NASA Astrophysics Data System (ADS)

Jordanova, Neli; Jordanova, Diana

2017-04-01

Soil profiles' development is a major theme in soil science research, as far as it gives basic information on soil genesis and classification. The use of soil magnetic properties as indicators for physical and geochemical conditions during pedogenesis received great attention during the last decade mainly in relation to paleoclimate reconstructions. However, tracking the observed general relationships with respect to degree of soil differentiation would lead to capitalization of this knowledge and its further utilization as pedogenic indicator. Here we present an overview of the observed relationships and depth variations of magnetic characteristics along ten soil profiles of Chernozems, Luvisols and Planosols from Bulgaria. Depending on the general soil group considered, different relationships between depth distribution of the relative amount of superparamagnetic (SP), single domain (SD) and larger pseudo single domain (PSD) to multi domain (MD) ferrimagnetic fractions are revealed. The profiles of the soil group with pronounced accumulation of organic matter in the mineral topsoil (Chernozems and Phaeozems) a systematic shift in the relative maxima of SP- and SD- like concentration proxies is observed with the increase of profile differentiation. In contrast, the group of soils with clay-enriched subsoil horizon (e.g. Luvisols) shows different evolution of the depth distribution of the grain-size proxy parameters. The increase of profile's degradation leads to a decrease in the amount of the SP fraction and a split in its maxima into two depth intervals related to the eluvial and illuvial horizons respectively. Along with this tendency, the maximum of the SD fraction moves to progressively deeper levels of the illuvial horizon. The third soil group of the Planosols is characterized by specific re-distribution of the iron oxides, caused by the oscillating oxidation - reduction fluctuations within the profile. The diagnostic eluvial and illuvial soil horizons are enriched with stable SD magnetite-like fraction, likely originating from ferrihydrite transformations under repeating oxidative - reductive conditions. The major magnetic phase in illuvial horizons is hematite, while in eluvial and C-horizons magnetite dominates. These different trends in the evolution of mineralogy and magnetic grain size fractions along the depth of the various soil groups are useful indicators of the soil chemistry, as well as the dynamics of the main soil forming processes.

Genome Sequence of Candidatus Nitrososphaera evergladensis from Group I.1b Enriched from Everglades Soil Reveals Novel Genomic Features of the Ammonia-Oxidizing Archaea

PubMed Central

Zhalnina, Kateryna V.; Dias, Raquel; Leonard, Michael T.; Dorr de Quadros, Patricia; Camargo, Flavio A. O.; Drew, Jennifer C.; Farmerie, William G.; Daroub, Samira H.; Triplett, Eric W.

2014-01-01

The activity of ammonia-oxidizing archaea (AOA) leads to the loss of nitrogen from soil, pollution of water sources and elevated emissions of greenhouse gas. To date, eight AOA genomes are available in the public databases, seven are from the group I.1a of the Thaumarchaeota and only one is from the group I.1b, isolated from hot springs. Many soils are dominated by AOA from the group I.1b, but the genomes of soil representatives of this group have not been sequenced and functionally characterized. The lack of knowledge of metabolic pathways of soil AOA presents a critical gap in understanding their role in biogeochemical cycles. Here, we describe the first complete genome of soil archaeon Candidatus Nitrososphaera evergladensis, which has been reconstructed from metagenomic sequencing of a highly enriched culture obtained from an agricultural soil. The AOA enrichment was sequenced with the high throughput next generation sequencing platforms from Pacific Biosciences and Ion Torrent. The de novo assembly of sequences resulted in one 2.95 Mb contig. Annotation of the reconstructed genome revealed many similarities of the basic metabolism with the rest of sequenced AOA. Ca. N. evergladensis belongs to the group I.1b and shares only 40% of whole-genome homology with the closest sequenced relative Ca. N. gargensis. Detailed analysis of the genome revealed coding sequences that were completely absent from the group I.1a. These unique sequences code for proteins involved in control of DNA integrity, transporters, two-component systems and versatile CRISPR defense system. Notably, genomes from the group I.1b have more gene duplications compared to the genomes from the group I.1a. We suggest that the presence of these unique genes and gene duplications may be associated with the environmental versatility of this group. PMID:24999826

Uncertainties and Solutions Related to Use of WRB (2007) in the Boreo-nemoral zone, Case of Latvia

NASA Astrophysics Data System (ADS)

Kasparinskis, Raimonds; Nikodemus, Olgerts; Rolavs, Nauris

2014-05-01

Relatively high diversity of soils groups according to the WRB (2007) classification is observed in forest ecosystems in the boreo-nemoral zone in Latvia. This is due to the geological genesis of area and environmental conditions (Kasparinskis, Nikodemus, 2012), as well as historical land use and management (Nikodemus et al., 2013). Due to the relatively young soils, Albic, Spodic and Cambic horizons are relatively weakly expressed in many cases. Relatively well developed Albic horizons occur in sandy forest soils, but unusually well expressed Spodic features are observed. In some cases there is a Cambic horizon, however location of Cambisols in the WRB (2007) soil classification sequence does not provide an opportunity to classify these soils as Cambisols, but they are classified as Arenosols. This sequence does not reflect the logical sheme of soil development, and therefore raises the question about location of Podzols, Arenosols and Cambisols in the sequence of WRB (2007) soil classification. Soils with two parent materials (abrupt textural change) are relatively common in Latvia, where conceptually on the small scale mapping results in classification as the soil group Planosols, but in many cases there is occurrence of Fluvic materials, as parent material in the upper part of the soil profile is formed by Baltic Ice lake sandy sediments - this leads to question about the location of Fluvisols and Planosols in the sequence of the WRB (2007) soil classification. Soil research has found cases, where a relatively well developed Spodic horizon was established as the result of ground water table depth in areas of abrupt textural change. In this case the profile corresponds to the soil group of Podzols, however in some cases - Gleysols not Planosols due to a high ground water table. Therefore there is a need for discussion also about the location of Podzols and Planosols in the sequence of the WRB (2007) soil classification. The above mentioned questions raise problems related to unambiguous determination of soil groups. Soil classification must be very precise by reflecting relationships of soil forming processes. In the development of international soil classification it is advisable to pay more attention on ecological processes. This study was supported by the European Social Fund No. 2013/0020/1DP/1.1.1.2.0/13/APIA/VIAA/066. References: IUSS Working Group, 2007. World Reference Base for Soil Resources 2006, first update 2007. World Soil Resources Reports 103. FAO, Rome. 103-116. Kasparinskis R., Nikodemus O. 2012. Influence of environmental factors on the spatial distribution and diversity of forest soil in Latvia. Estonian Journal of Earth Sciences. 61(1): 48-64. Nikodemus O., Kasparinskis R., Kukuls I. 2013. Influence of Afforestation on Soil Genesis, Morphology and Properties in Glacial Till Deposits. Archives of Agronomy and Soil Science. 59(3): 449-465.

[Analysis of soil humus and components after 26 years' fertilization by infrared spectroscopy method].

PubMed

Zhang, Yu-Lan; Sun, Cai-Xia; Chen, Zhen-Hua; Li, Dong-Po; Liu, Xing-Bin; Chen, Li-Jun; Wu, Zhi-Jie; Du, Jian-Xiong

2010-05-01

The infrared spectrum was used to discuss structure change of soil humus and components of chemical groups in soil humic acids (HA) and fulvic acids (FA) isolated from soils in different fertilization treatment after 26 year's fertilization. The result indicated that using the infrared spectroscopy method for the determination of humus, humus fractions (HA and FA) and their structure is feasible. Fertilization affected the structure and content of soil humus and aromatization degree. After 26 years' fertilization, the infrared spectrum shapes with different treatments are similar, but the characteristic peak intensity is obviously different, which reflects the effects of different fertilization treatments on the structure and amounts of soil humus or functional groups. Compared with no fertilization, little molecule saccharides decreased and aryl-groups increased under application of inorganic fertilizer or combined application of organic and chemical fertilizer. The effect was greater in Treatment NPK and M+NPK than in Treatment M1 N and M2 N. Organic and NPK fertilizer increased the development of soil and increased soil quality to a certain extent. Results showed that organic fertilization increased aromatization degree of soil humus and humus fractions distinctly. The authors could estimate soil humus evolvement of different fertilization with infrared spectroscopy.

A framework of connections between soil and people can help improve sustainability of the food system and soil functions.

PubMed

Ball, Bruce C; Hargreaves, Paul R; Watson, Christine A

2018-04-01

Globally soil quality and food security continue to decrease indicating that agriculture and the food system need to adapt. Improving connection to the soil by knowledge exchange can help achieve this. We propose a framework of three types of connections that allow the targeting of appropriate messages to different groups of people. Direct connection by, for example, handling soil develops soil awareness for management that can be fostered by farmers joining groups on soil-focused farming such as organic farming or no-till. Indirect connections between soil, food and ecosystem services can inform food choices and environmental awareness in the public and can be promoted by, for example, gardening, education and art. Temporal connection revealed from past usage of soil helps to bring awareness to policy workers of the need for the long-term preservation of soil quality for environmental conservation. The understanding of indirect and temporal connections can be helped by comparing them with the operations of the networks of soil organisms and porosity that sustain soil fertility and soil functions.

Biochar-macrofauna interplay: Searching for new bioindicators.

PubMed

Castracani, C; Maienza, A; Grasso, D A; Genesio, L; Malcevschi, A; Miglietta, F; Vaccari, F P; Mori, A

2015-12-01

Biochar incorporation in agricultural soils has been proposed as a climate change mitigation strategy and has proved to substantially increase crop productivity via physical, chemical and biological mechanisms. The changes induced in soil properties are known to have a direct impact on soil ecosystem with consequences for soil biota community that, in turn, can influence biochar aging in soil. Despite several studies investigated in the interplay between biochar and soil microbiology, there is a clear lack of information on groups that live in the most superficial ground layers: soil meso and macro fauna. These groups are of great importance if we consider that biochar application should ideally be located in the soil's surface layer (0-30 cm). Our study is the first attempt to investigate the interactions between biochar soil amendments and aboveground soil macro-meso fauna in a field crop. This was made setting-up a randomized-block experiment on a processing tomato crop in northern Italy, using three different biochar types and periodically monitoring soil parameters and fauna abundances along the crop growing cycle in summer 2013. Results show that the impact of biochar application on soil fauna as a whole is small when compared to that of agricultural management, suggesting that this amendment does not have short-term ecological interferences. Nevertheless, ants exhibited variations in abundances and distribution connected to properties of amended soils such as temperature, pH and humidity, proving that they can be effectively used as a target group in the study of interactions between biochar and soil biota. Copyright © 2015 Elsevier B.V. All rights reserved.

Ecological evaluation of rangeland quality in dry subtropics of Azerbaijan

NASA Astrophysics Data System (ADS)

Gasanova, A. F.

2014-12-01

The results of ecological evaluation of soil-landscape complexes of winter rangelands of Gobustan with the use of energy criteria are discussed. The diagnostic characteristics of soil fertility and correction coefficients for the thickness of texture of soil horizons, soil salinization, soil erosion, and microelemental composition of soils have been used to separate the soils of winter rangelands into several quality groups. A larger part of the soils belongs to the medium quality group with the mean weighted quality factor (bonitet) of 52. Special assessment scales have been suggested for the differential ecological assessment and monitoring of the rangelands. In the past 40 years, the area of steppe landscapes has decreased from 22.7 to 12%, whereas the area of semideserts has increased up to 64%. The area of best-quality soils within the studied rangelands had decreased by three times, and their average quality factor has decreased from 92 to 86.

Multi-Analytical Approach Reveals Potential Microbial Indicators in Soil for Sugarcane Model Systems

PubMed Central

Navarrete, Acacio Aparecido; Diniz, Tatiana Rosa; Braga, Lucas Palma Perez; Silva, Genivaldo Gueiros Zacarias; Franchini, Julio Cezar; Rossetto, Raffaella; Edwards, Robert Alan; Tsai, Siu Mui

2015-01-01

This study focused on the effects of organic and inorganic amendments and straw retention on the microbial biomass (MB) and taxonomic groups of bacteria in sugarcane-cultivated soils in a greenhouse mesocosm experiment monitored for gas emissions and chemical factors. The experiment consisted of combinations of synthetic nitrogen (N), vinasse (V; a liquid waste from ethanol production), and sugarcane-straw blankets. Increases in CO2-C and N2O-N emissions were identified shortly after the addition of both N and V to the soils, thus increasing MB nitrogen (MB-N) and decreasing MB carbon (MB-C) in the N+V-amended soils and altering soil chemical factors that were correlated with the MB. Across 57 soil metagenomic datasets, Actinobacteria (31.5%), Planctomycetes (12.3%), Deltaproteobacteria (12.3%), Alphaproteobacteria (12.0%) and Betaproteobacteria (11.1%) were the most dominant bacterial groups during the experiment. Differences in relative abundance of metagenomic sequences were mainly revealed for Acidobacteria, Actinobacteria, Gammaproteobacteria and Verrucomicrobia with regard to N+V fertilization and straw retention. Differential abundances in bacterial groups were confirmed using 16S rRNA gene-targeted phylum-specific primers for real-time PCR analysis in all soil samples, whose results were in accordance with sequence data, except for Gammaproteobacteria. Actinobacteria were more responsive to straw retention with Rubrobacterales, Bifidobacteriales and Actinomycetales related to the chemical factors of N+V-amended soils. Acidobacteria subgroup 7 and Opitutae, a verrucomicrobial class, were related to the chemical factors of soils without straw retention as a surface blanket. Taken together, the results showed that MB-C and MB-N responded to changes in soil chemical factors and CO2-C and N2O-N emissions, especially for N+V-amended soils. The results also indicated that several taxonomic groups of bacteria, such as Acidobacteria, Actinobacteria and Verrucomicrobia, and their subgroups acted as early-warning indicators of N+V amendments and straw retention in sugarcane-cultivated soils, which can alter the soil chemical factors. PMID:26057123

Maintenance of soil functioning following erosion of microbial diversity.

PubMed

Wertz, Sophie; Degrange, Valérie; Prosser, James I; Poly, Franck; Commeaux, Claire; Freitag, Thomas; Guillaumaud, Nadine; Roux, Xavier Le

2006-12-01

The paradigm that soil microbial communities, being very diverse, have high functional redundancy levels, so that erosion of microbial diversity is less important for ecosystem functioning than erosion of plant or animal diversity, is often taken for granted. However, this has only been demonstrated for decomposition/respiration functions, performed by a large proportion of the total microbial community, but not for specialized microbial groups. Here, we determined the impact of a decrease in soil microbial diversity on soil ecosystem processes using a removal approach, in which less abundant species were removed preferentially. This was achieved by inoculation of sterile soil microcosms with serial dilutions of a suspension obtained from the same non-sterile soil and subsequent incubation, to enable recovery of community size. The sensitivity to diversity erosion was evaluated for three microbial functional groups with known contrasting taxonomic diversities (ammonia oxidizers < denitrifiers < heterotrophs). Diversity erosion within each functional group was characterized using molecular fingerprinting techniques: ribosomal intergenic spacer analysis (RISA) for the eubacterial community, denaturing gradient gel electrophoresis (DGGE) analysis of nirK genes for denitrifiers, and DGGE analysis of 16S rRNA genes for betaproteobacterial ammonia oxidizers. In addition, we simulated the impact of the removal approach by dilution on the number of soil bacterial species remaining in the inoculum using values of abundance distribution of bacterial species reported in the literature. The reduction of the diversity of the functional groups observed from genetic fingerprints did not impair the associated functioning of these groups, i.e. carbon mineralization, denitrification and nitrification. This was remarkable, because the amplitude of diversity erosion generated by the dilution approach was huge (level of bacterial species loss was estimated to be around 99.99% for the highest dilution). Our results demonstrate that the vast diversity of the soil microbiota makes soil ecosystem functioning largely insensitive to biodiversity erosion even for functions performed by specialized groups.

Soils from Mare Crisium - Agglutinitic glass chemistry and soil development

NASA Technical Reports Server (NTRS)

Hu, H.-N.; Taylor, L. A.

1978-01-01

Agglutinates were studied in 29 polished thin sections of grain mounts from various size fractions of six Luna 24 soil horizons. Three populations of agglutinitic glass compositions were found: a high-MgO, high-FeO group identified as a coarse-grained basaltic component; a low-MgO, low-FeO group from a highland source; and a low-MgO, high-FeO group probably from the subophitic basalt component. The presence of a significant amount of admixed highland component probably accounts for an enrichment in plagioclase and a depletion in ferromagnesian elements displayed by the agglutinitic glass compositions relative to the bulk soil.

Changes in quantity and spectroscopic properties of water-extractable organic matter during soil aquifer treatment.

PubMed

Xue, S; Zhao, Q L; Wei, L L; Ma, X P; Tie, M

2013-01-01

The aim of this study was to identify qualitative and quantitative changes in the character of water-extractable organic matter (WEOM) in soils as a consequence of soil aquifer treatment (SAT). Soil samples were obtained from a soil-column system with a 2-year operation, and divided into seven layers from top to bottom: CS1 (0-12.5 cm), CS2 (12.5-25 cm), CS3 (25-50 cm), CS4 (50-75 cm), CS5 (75-100 cm), CS6 (100-125 cm) and CS7 (125-150 cm). A sample of the original soil used to pack the columns was also analysed to determine the effects of SAT. Following 2 years of SAT operation, both soil organic carbon and water-extractable organic carbon were shown to accumulate in the top soil layer (0-12.5 cm), and to decrease in soil layers deeper than 12.5 cm. The WEOM in the top soil layer was characterized by low aromaticity index (AI), low emission humification index (HIX) and low fluorescence efficiency index (F(eff)). On the other hand, the WEOM in soil layers deeper than 12.5 cm had increased values of HIX and F(eff), as well as decreased AI values relative to the original soil before SAT. In all soil layers, the percentage of hydrophobic and transphilic fractions decreased, while that of the hydrophilic fraction increased, as a result of SAT. The production of the amide-2 functional groups was observed in the top soil layer. SAT operation also led to the enrichment of hydrocarbon and amide-1 functional groups, as well as the depletion of oxygen-containing functional groups in soil layers deeper than 12.5 cm.

Students Dig Deep in the Mystery Soil Lab: A Playful, Inquiry-Based Soil Laboratory Project

ERIC Educational Resources Information Center

Thiet, Rachel K.

2014-01-01

The Mystery Soil Lab, a playful, inquiry-based laboratory project, is designed to develop students' skills of inquiry, soil analysis, and synthesis of foundational concepts in soil science and soil ecology. Student groups are given the charge to explore and identify a "Mystery Soil" collected from a unique landscape within a 10-mile…

Elevated CO2 and O3t concentrations differentially affect selected groups of the fauna in temperate forest soils

Treesearch

Gladys I. Loranger; Kurt S. Pregitzer; John S. King

2004-01-01

Rising atmospheric CO2 concentrations may change soil fauna abundance. How increase of tropospheric ozone (O3t) concentration will modify these responses is still unknown. We have assessed independent and interactive effects of elevated [CO2] and [O3t] on selected groups of soil...

Hair and toenail arsenic concentrations of residents living in areas with high environmental arsenic concentrations.

PubMed Central

Hinwood, Andrea L; Sim, Malcolm R; Jolley, Damien; de Klerk, Nick; Bastone, Elisa B; Gerostamoulos, Jim; Drummer, Olaf H

2003-01-01

Surface soil and groundwater in Australia have been found to contain high concentrations of arsenic. The relative importance of long-term human exposure to these sources has not been established. Several studies have investigated long-term exposure to environmental arsenic concentrations using hair and toenails as the measure of exposure. Few have compared the difference in these measures of environmental sources of exposure. In this study we aimed to investigate risk factors for elevated hair and toenail arsenic concentrations in populations exposed to a range of environmental arsenic concentrations in both drinking water and soil as well as in a control population with low arsenic concentrations in both drinking water and soil. In this study, we recruited 153 participants from areas with elevated arsenic concentrations in drinking water and residential soil, as well as a control population with no anticipated arsenic exposures. The median drinking water arsenic concentrations in the exposed population were 43.8 micro g/L (range, 16.0-73 micro g/L) and median soil arsenic concentrations were 92.0 mg/kg (range, 9.1-9,900 mg/kg). In the control group, the median drinking water arsenic concentration was below the limit of detection, and the median soil arsenic concentration was 3.3 mg/kg. Participants were categorized based on household drinking water and residential soil arsenic concentrations. The geometric mean hair arsenic concentrations were 5.52 mg/kg for the drinking water exposure group and 3.31 mg/kg for the soil exposure group. The geometric mean toenail arsenic concentrations were 21.7 mg/kg for the drinking water exposure group and 32.1 mg/kg for the high-soil exposure group. Toenail arsenic concentrations were more strongly correlated with both drinking water and soil arsenic concentrations; however, there is a strong likelihood of significant external contamination. Measures of residential exposure were better predictors of hair and toenail arsenic concentrations than were local environmental concentrations. PMID:12573904

Spatial and temporal anomalies of soil gas in northern Taiwan and its tectonic and seismic implications

NASA Astrophysics Data System (ADS)

Fu, Ching-Chou; Yang, Tsanyao Frank; Chen, Cheng-Hong; Lee, Lou-Chuang; Wu, Yih-Min; Liu, Tsung-Kwei; Walia, Vivek; Kumar, Arvind; Lai, Tzu-Hua

2017-11-01

In this paper, we study (1) the spatial anomalies and (2) the temporal anomalies of soil gas in northern Taiwan. The spatial anomalies of soil gas are related to tectonic faults, while the temporal anomalies of soil gas are associated with pre-earthquake activities. Detailed soil gas sampling was systematically performed, and the analysis of the collected gas species shows that high helium and nitrogen concentrations appear in samples from specific sites, which coincide with the structural setting of the area studied. This analysis indicates the possibility of using these soil gases to determine fault zones in the studied area. Based on the soil gas data, a station (Tapingti) for automatic soil gas monitoring was constructed on an appropriate site at the fault zone. Some anomalous high radon concentrations at certain times can be identified from the dataset, which was generated by the continuous monitoring of soil gas for over a year. Notably, many of these anomalies were observed several hours to a few days before the earthquakes (ML > 3) that occurred in northern Taiwan. By combining the information of epicenters and fault plane solutions of these earthquakes, we find that the shallow earthquakes (<15 km) were mainly strike-slip and normal-type earthquakes, and concentrated within a distance of 30 km to the monitoring site (Group A). The deep earthquakes (>20 km) were mainly thrust-type earthquakes and distributed in greater distances (>45 km) east of the monitoring site (Group B). Such focal mechanisms of earthquakes suggest an extensional and compressional structural domain in the continental crust for Group A and Group B earthquakes, respectively. It is suggested that the pre-earthquake activities associated with the seismicity of Group B may be transmitted along the major decollement in the region below the Tapingti station, leading to the observed soil gas enhancements.

Application of manure containing tetracyclines slowed down the dissipation of tet resistance genes and caused changes in the composition of soil bacteria.

PubMed

Xiong, Wenguang; Wang, Mei; Dai, Jinjun; Sun, Yongxue; Zeng, Zhenling

2018-01-01

Manure application contributes to the increased environmental burden of antibiotic resistance genes (ARGs). We investigated the response of tetracycline (tet) resistance genes and bacterial taxa to manure application amended with tetracyclines over two months. Representative tetracyclines (oxytetracycline, chlorotetracycline and doxycycline), tet resistance genes (tet(M), tet(O), tet(W), tet(S), tet(Q) and tet(X)) and bacterial taxa in the untreated soil, +manure, and +manure+tetracyclines groups were analyzed. The abundances of all tet resistance genes in the +manure group were significantly higher than those in the untreated soil group on day 1. The abundances of all tet resistance genes (except tet(Q) and tet(X)) were significantly lower in the +manure group than those in the +manure+tetracyclines group on day 30 and 60. The dissipation rates were higher in the +manure group than those in the +manure+tetracyclines group. Disturbance of soil bacterial community composition imposed by tetracyclines was also observed. The results indicated that tetracyclines slowed down the dissipation of tet resistance genes in arable soil after manure application. Application of manure amended with tetracyclines may provide a significant selective advantage for species affiliated to the taxonomical families of Micromonosporaceae, Propionibacteriaceae, Streptomycetaceae, Nitrospiraceae and Clostridiaceae. Copyright © 2017 Elsevier Inc. All rights reserved.

[Community structure of soil fauna in Eucalyptus grandis plantations at different slope locations].

PubMed

Zhao, Yu; Zhong, Yu; Zhang, Jian; Yang, Wan-qin

2010-09-01

To understand the effects of slope location on the community structure of soil fauna in Eucalyptus grandis plantation, an investigation was made on the soil fauna in 3 E. grandis plantations at different slope locations in the hilly area of Sichuan Province from January to October 2009. A total of 39,2762 individuals were observed, belonging to 146 groups, 7 phyla, 16 classes, and 31 orders. The community composition, trophic group, diversity, and seasonal dynamics of soil fauna in the plantations all varied with slope. The abundance of macro-fauna, xeric meso- and micro-fauna, saprophagous macro-fauna, and omnivorous xeric meso- and micro-fauna increased with the decrease of slope, indicating that soil fauna had sensitive responses to the soil environmental factors affected by slope. Significant differences in the diversity of soil saprophagous macro-fauna and hygrophilous meso- and micro-fauna were observed at different slope locations, suggesting that these two faunal groups could be used as the indicators of the habitat heterogeneity of E. grandis plantations at different slope. Overall, slope location had definite effects on the community structure and distribution of soil fauna in the E. grandis plantations, but the effects were not statistically significant.

Nitrous Oxide Reductase (nosZ) Gene Fragments Differ between Native and Cultivated Michigan Soils

PubMed Central

Stres, Blaž; Mahne, Ivan; Avguštin, Gorazd; Tiedje, James M.

2004-01-01

The effect of standard agricultural management on the genetic heterogeneity of nitrous oxide reductase (nosZ) fragments from denitrifying prokaryotes in native and cultivated soil was explored. Thirty-six soil cores were composited from each of the two soil management conditions. nosZ gene fragments were amplified from triplicate samples, and PCR products were cloned and screened by restriction fragment length polymorphism (RFLP). The total nosZ RFLP profiles increased in similarity with soil sample size until triplicate 3-g samples produced visually identical RFLP profiles for each treatment. Large differences in total nosZ profiles were observed between the native and cultivated soils. The fragments representing major groups of clones encountered at least twice and four randomly selected clones with unique RFLP patterns were sequenced to verify nosZ identity. The sequence diversity of nosZ clones from the cultivated field was higher, and only eight patterns were found in clone libraries from both soils among the 182 distinct nosZ RFLP patterns identified from the two soils. A group of clones that comprised 32% of all clones dominated the gene library of native soil, whereas many minor groups were observed in the gene library of cultivated soil. The 95% confidence intervals of the Chao1 nonparametric richness estimator for nosZ RFLP data did not overlap, indicating that the levels of species richness are significantly different in the two soils, the cultivated soil having higher diversity. Phylogenetic analysis of deduced amino acid sequences grouped the majority of nosZ clones into an interleaved Michigan soil cluster whose cultured members are α-Proteobacteria. Only four nosZ sequences from cultivated soil and one from the native soil were related to sequences found in γ-Proteobacteria. Sequences from the native field formed a distinct, closely related cluster (Dmean = 0.16) containing 91.6% of the native clones. Clones from the cultivated field were more distantly related to each other (Dmean = 0.26), and 65% were found outside of the cluster from the native soil, further indicating a difference in the two communities. Overall, there appears to be a relationship between use and richness, diversity, and the phylogenetic position of nosZ sequences, indicating that agricultural use of soil caused a shift to a more diverse denitrifying community. PMID:14711656

pH dominates variation in tropical soil archaeal diversity and community structure.

PubMed

Tripathi, Binu M; Kim, Mincheol; Lai-Hoe, Ang; Shukor, Nor A A; Rahim, Raha A; Go, Rusea; Adams, Jonathan M

2013-11-01

Little is known of the factors influencing soil archaeal community diversity and composition in the tropics. We sampled soils across a range of forest and nonforest environments in the equatorial tropics of Malaysia, covering a wide range of pH values. DNA was PCR-amplified for the V1-V3 region of the 16S rRNA gene, and 454-pyrosequenced. Soil pH was the best predictor of diversity and community composition of Archaea, being a stronger predictor than land use. Archaeal OTU richness was highest in the most acidic soils. Overall archaeal abundance in tropical soils (determined by qPCR) also decreased at higher pH. This contrasts with the opposite trend previously found in temperate soils. Thaumarcheota group 1.1b was more abundant in alkaline soils, whereas group 1.1c was only detected in acidic soils. These results parallel those found in previous studies in cooler climates, emphasizing niche conservatism among broad archaeal groups. Among the most abundant operational taxonomic units (OTUs), there was clear evidence of niche partitioning by pH. No individual OTU occurred across the entire range of pH values. Overall, the results of this study show that pH plays a major role in structuring tropical soil archaeal communities. © 2013 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Impact of Lowland Rainforest Transformation on Diversity and Composition of Soil Prokaryotic Communities in Sumatra (Indonesia)

PubMed Central

Schneider, Dominik; Engelhaupt, Martin; Allen, Kara; Kurniawan, Syahrul; Krashevska, Valentyna; Heinemann, Melanie; Nacke, Heiko; Wijayanti, Marini; Meryandini, Anja; Corre, Marife D.; Scheu, Stefan; Daniel, Rolf

2015-01-01

Prokaryotes are the most abundant and diverse group of microorganisms in soil and mediate virtually all biogeochemical cycles in terrestrial ecosystems. Thereby, they influence aboveground plant productivity and diversity. In this study, the impact of rainforest transformation to intensively managed cash crop systems on soil prokaryotic communities was investigated. The studied managed land use systems comprised rubber agroforests (jungle rubber), rubber plantations and oil palm plantations within two Indonesian landscapes Bukit Duabelas and Harapan. Soil prokaryotic community composition and diversity were assessed by pyrotag sequencing of bacterial and archaeal 16S rRNA genes. The curated dataset contained 16,413 bacterial and 1679 archaeal operational taxonomic units at species level (97% genetic identity). Analysis revealed changes in indigenous taxon-specific patterns of soil prokaryotic communities accompanying lowland rainforest transformation to jungle rubber, and intensively managed rubber and oil palm plantations. Distinct clustering of the rainforest soil communities indicated that these are different from the communities in the studied managed land use systems. The predominant bacterial taxa in all investigated soils were Acidobacteria, Actinobacteria, Alphaproteobacteria, Betaproteobacteria, and Gammaproteobacteria. Overall, the bacterial community shifted from proteobacterial groups in rainforest soils to Acidobacteria in managed soils. The archaeal soil communities were mainly represented by Thaumarchaeota and Euryarchaeota. Members of the Terrestrial Group and South African Gold Mine Group 1 (Thaumarchaeota) dominated in the rainforest and members of Thermoplasmata in the managed land use systems. The alpha and beta diversity of the soil prokaryotic communities was higher in managed land use systems than in rainforest. In the case of bacteria, this was related to soil characteristics such as pH value, exchangeable Ca and Fe content, C to N ratio, and extractable P content. Archaeal community composition and diversity were correlated to pH value, exchangeable Fe content, water content, and total N. The distribution of bacterial and archaeal taxa involved in biological N cycle indicated functional shifts of the cycle during conversion of rainforest to plantations. PMID:26696965

Loss of soil (macro)fauna due to the expansion of Brazilian sugarcane acreage.

PubMed

Franco, André L C; Bartz, Marie L C; Cherubin, Maurício R; Baretta, Dilmar; Cerri, Carlos E P; Feigl, Brigitte J; Wall, Diana H; Davies, Christian A; Cerri, Carlos C

2016-09-01

Land use changes (LUC) from pasture to sugarcane (Saccharum spp.) crop are expected to add 6.4Mha of new sugarcane land by 2021 in the Brazilian Cerrado and Atlantic Forest biomes. We assessed the effects of these LUC on the abundance and community structure of animals that inhabit soils belowground through a field survey using chronosequences of land uses comprising native vegetation, pasture, and sugarcane along a 1000-km-long transect across these two major tropical biomes in Brazil. Macrofauna community composition differed among land uses. While most groups were associated with samples taken in native vegetation, high abundance of termites and earthworms appeared associated with pasture soils. Linear mixed effects analysis showed that LUC affected total abundance (X(2)(1)=6.79, p=0.03) and taxa richness (X(2)(1)=6.08, p=0.04) of soil macrofauna. Abundance increased from 411±70individualsm(-2) in native vegetation to 1111±202individualsm(-2) in pasture, but decreased sharply to 106±24individualsm(-2) in sugarcane soils. Diversity decreased 24% from native vegetation to pasture, and 39% from pasture to sugarcane. Thus, a reduction of ~90% in soil macrofauna abundance, besides a loss of ~40% in the diversity of macrofauna groups, can be expected when sugarcane crops replace pasture in Brazilian tropical soils. In general, higher abundances of major macrofauna groups (ants, coleopterans, earthworms, and termites) were associated with higher acidity and low contents of macronutrients and organic matter in soil. This study draws attention for a significant biodiversity loss belowground due to tropical LUC in sugarcane expansion areas. Given that many groups of soil macrofauna are recognized as key mediators of ecosystem processes such as soil aggregation, nutrients cycling and soil carbon storage, our results warrant further efforts to understand the impacts of altering belowground biodiversity and composition on soil functioning and agriculture performance across LUC in the tropics. Copyright © 2016 Elsevier B.V. All rights reserved.

Environmental Assessment: Conversion of the 820th Security Forces Group at Moody AFB, Georgia to a Contingency Response Group

DTIC Science & Technology

2003-08-01

Contingency Response Group (CRG) at Moody Air Force Base (AFB), GA . DESCRIPTION OF THE PROPOSED ACTION AND ALTERNATIVES. The United States Air Force...sinkhole formation. 3.5.3.3 Soils Moody AFB Moody AFB is located in the Tifton Upland District of the Lower Coastal Plain. In general, soils on...base. Arsenic, barium, chromium, copper, iron, selenium, and zinc have been found to be naturally occurring in the area. Predominant soils are Tifton

A field day of soil regulation methods

NASA Astrophysics Data System (ADS)

Kempter, Axel; Kempter, Carmen

2015-04-01

The subject Soil plays an important role in the school subject geography. In particular in the upper classes it is expected that the knowledge from the area of Soil can be also be applied in other subjects. Thus, e.g., an assessment of economy and agricultural development and developing potential requires the interweaving of natural- geographic and human-geographic factors. The treatment of the subject Soil requires the desegregation of the results of different fields like Physics, Chemistry and Biology. Accordingly the subject gives cause to professional-covering lessons and offers the opportunity for practical work as well as excursions. Beside the mediation of specialist knowledge and with the support of the methods and action competences, the independent learning and the practical work should have a special emphasis on the field excursion by using stimulating exercises oriented to solving problems and mastering the methods. This aim should be achieved by the interdisciplinary treatment of the subject Soil in the task-oriented learning process on the field day. The methods and experiments should be sensibly selected for both the temporal and material supply constraints. During the field day the pupils had to categorize soil texture, soil colour, soil profile, soil skeleton, lime content, ion exchanger (Soils filter materials), pH-Value, water retention capacity and evidence of different ions like e.g. Fe3+, Mg2+, Cl- and NO3-. The pupils worked on stations and evaluated the data to receive a general view of the ground at the end. According to numbers of locations, amount of time and group size, different procedures can be offered. There are groups of experts who carry out the same experiment at all locations and split for the evaluation in different groups or each group ran through all stations. The results were compared and discussed at the end.

Multispectral determination of soil moisture. [Guymon, Oklahoma

NASA Technical Reports Server (NTRS)

Estes, J. E.; Simonett, D. S. (Principal Investigator); Hajic, E. J.; Blanchard, B. J.

1980-01-01

The edited Guymon soil moisture data collected on August 2, 5, 14, 17, 1978 were grouped into four field cover types for statistical analysis. These are the bare, milo with rows parallel to field of view, milo with rows perpendicular to field of view and alfalfa cover groups. There are 37, 22, 24 and 14 observations respectively in each group for each sensor channel and each soil moisture layer. A subset of these data called the 'five cover set' (VEG5) limited the scatterometer data to the 15 deg look angle and was used to determine discriminant functions and combined group regressions.

Acidity field of soils as ion-exchange systems and the diagnostics of genetic soil horizons

NASA Astrophysics Data System (ADS)

Kokotov, Yu. A.; Sukhacheva, E. Yu.; Aparin, B. F.

2014-12-01

For the comprehensive description of the acidity of a two-phase ion-exchange system, we should analyze two curves of the ionite titration by a strong base in water and salt solutions and find the quantitative relationships between the corresponding pH characteristics. An idea of the three-dimensional field of acidity of ion-exchange systems (the phase space of the soil acidity characteristics) and its three two-dimensional projections is suggested. For soils, three interrelated characteristics—the pH values of the salt and water extracts and the degree of base saturation—can serve as spatial coordinates for the acidity field. Representation of factual data in this field makes it possible to compare and analyze the acidity characteristics of different soils and soil horizons and to determine their specific features. Differentiation of the field into separate volumes allows one to present the data in a discrete form. We have studied the distribution patterns of the groups of soil horizons from Leningrad oblast and other regions of northwestern Russia in the acidity field. The studied samples are grouped in different partially overlapping areas of the projections of the acidity field. The results of this grouping attest to the correctness of the modern classification of Russian soils. A notion of the characteristic soil area in the acidity field is suggested; it can be applied to all the soils with a leaching soil water regime.

Occurrence of Hydrocarbon Degrading Genes in the Soils of the Republic of Tatarstan (Russia)

NASA Astrophysics Data System (ADS)

Biktasheva, L. R.; Shalyamova, R. P.; Guseva, U. A.; Galitskaya, P. Yu

2018-01-01

Oil pollution is one of the most serious environmental problems nowadays. The ability of soils for self-restoration is important, when choosing the strategy of pollution control. This ability depends on the pull of microbes able to decompose hydrocarbons that were present in the nonpolluted soil prior to pollution. In this study, the occurrence of alkane degrading genes in the soils of the Republic of Tatarstan being one of the oil processing regions in Russia, was investigated. It was found that alkane degrading genes belonging to group I were present in 20 of the 25 soil samples, and their abundances ranged between 0.01 and 0.07%. Alkane degrading genes belonging to group II were not detected in the samples investigated, and those belonging to group III were present in all the samples, and their abundances ranged between 0.06 and 7.25%. No correlation between the alkane degrading gene copy numbers and pH and organic carbon content in soils was revealed.

Global diversity and geography of soil fungi. Minus one widespread group

DOE PAGES

Schadt, Christopher Warren; Rosling, Anna

2015-04-15

In their research article Global diversity and geography of soil fungi Tedersoo et al. (28 November, 2014) present a compelling study regarding patterns of biodiversity of fungi, at a scale unprecedented to date for fungal biogeographical studies. The study demonstrates strong global biogeographic patterns in richness and community composition of soil fungi, what concerns us with the study is what we don t see. Unfortunately this study underestimates fungal diversity of at least one key group of soil fungi due to reliance on a single traditional primer with known flaws, and as a consequence the overall relative abundance of fungalmore » groups may also be skewed.« less

Global diversity and geography of soil fungi. Minus one widespread group

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schadt, Christopher Warren; Rosling, Anna

In their research article Global diversity and geography of soil fungi Tedersoo et al. (28 November, 2014) present a compelling study regarding patterns of biodiversity of fungi, at a scale unprecedented to date for fungal biogeographical studies. The study demonstrates strong global biogeographic patterns in richness and community composition of soil fungi, what concerns us with the study is what we don t see. Unfortunately this study underestimates fungal diversity of at least one key group of soil fungi due to reliance on a single traditional primer with known flaws, and as a consequence the overall relative abundance of fungalmore » groups may also be skewed.« less

Soil Genesis and Development, Lesson 5 - Soil Geography and Classification

USDA-ARS?s Scientific Manuscript database

The system of soil classification developed by the United States Department of Agriculture (USDA) is called Soil Taxonomy. Soil Taxonomy consists of a hierarchy of six levels which, from highest to lowest, are: Order, Suborder, Great Group, Subgroup, family, and series. This lesson will focus on bro...

Platinum-Group Elements in Soils and Street Dust of the Southeastern Administrative District of Moscow

NASA Astrophysics Data System (ADS)

Ladonin, D. V.

2018-03-01

The contents of five platinum-group metals (Ru, Rh, Pd, Ir, and Pt) in soils and street dust of the Southeastern administrative district (SEAD) of Moscow have been determined. The contents of these elements in soils may considerably exceed their natural abundances in the lithosphere and are characterized by considerable variability and asymmetric frequency distribution. A close correlation between Rh, Pd, and Pt contents in soils and street dust has been shown. The data on the contents of the elements and the ratios between them suggest that motor vehicles are the major source of pollution of soils and street dust in the studied district.

Bioavailability Of Arsenic In Arsenical Pesticide-Amended Soils: Preliminary Greenhouse Study

NASA Astrophysics Data System (ADS)

Quazi, S.; Sarkar, D.; Khairom, A.; Datta, R.; Sharma, S.

2005-05-01

Long-term application of arsenical pesticides in agricultural lands has resulted in high levels of arsenic (As). Conversion of former agricultural lands to residential areas has resulted in increased human contact with soil As. Soil ingestion from incidental hand-to-mouth activity by children is now a very important issue in assessing human health risk associated with exposure to arsenical pesticide-applied former agricultural soils. Human health risk from direct exposure to soil As via hand to mouth action is restricted only to those fractions of As in the soil that are available to the human gastrointestinal system. Thus this study aimed at addressing the issue of soil variability on As bioavailability as a function of soil physiochemical properties in a dynamic interaction between soils, water and plants and pesticides. In the current greenhouse study two soils with drastically different chemical characteristics w.r.t As reactivity (Immokalee-low As retention potential and Millhopper-high As retention potential) and one pesticide (sodium arsenate) were used. Soils were amended with sodium arsenate at two rates representing the high and low ends of As contamination, generally representative of Superfunds site conditions: 675 and 1500 mg/kg As. Rice (Oryza sativa) was used as the test crop. Sequential digestion to estimate in-vitro As in the stomach phase and the intestinal phase was employed on soils sampled at 4 times: 0-time, after 3 mo, 6 mo and 9 mo of soil-pesticide equilibration. In-vitro bioavailability experiments were also performed with the same soils in order to obtain an estimate of the amount of As that would be absorbed to the intestinal linings in simulated systems. Following the greenhouse study, selective in-vivo bioavailability studies using As-contaminated soils will be conducted on male and female mice to correlate in-vitro results with the in-vivo data. Treatments will consist of a soil group (As in soil), a positive control group (only As) and a negative control group (no soil, no As). Results from the in-vitro and in-vivo studies will help understand the effects of soil properties on As bioavailability. Keywords: Bioavailability, pesticide, soil, arsenic, greenhouse.

Composition of soil testate amoebae communities: their structure and modifications in the temperate rain forests of New Zealand and Tasmania.

PubMed

Bamforth, Stuart S

2015-01-01

A study of the temperate rain forests of New Zealand and Tasmania showed that their soil testate amoebae communities are composed of five groups of taxa: (1) seven taxa characteristic of wet acidic soils and Sphagnum peatlands (i.e., Amphitemidae, Apodera, Alcodera, Certesella, Cyphoderia, Placocista); (2) a group of 16 species of predatory Nebelids and Heleopera spp., characteristic of Sphagnum and rainforests; (3) a group of 17 species of litter and soil Euglypha, excluding the smallest ones; (4) a diverse population of other morphotypes common in other biomes; and (5) a population of small euryoecious taxa - Cryptodifflugia and Pseudodifflugia spp., Euglypha rotunda, E. laevis, Corythion and Trinema spp. This fifth group, with other r-selected protists (e.g., colpodid ciliates) appears in all habitats. Soil testate communities of other rainforests are composed of the same five groups and are distinguished by the first three assemblages. The fourth and fifth groups, often supplemented with a few Euglypha species, comprise the soil testate amoebae of other biomes. Nebelids and Heleopera, incorporating prey idiosomes into their shells, add an additional link to the role of Euglyphids in the silica cycle. Three Gondwanan Nebelid genera, Apodera, Alcodera, and Certesella were frequently observed, and the discovery of Alcodera cockayni in Tasmania extends its recorded distribution in the Southern Hemisphere. © 2014 The Author(s) Journal of Eukaryotic Microbiology © 2014 International Society of Protistologists.

Historical Highlights From 75 Years of the Soil Science Society of America

NASA Astrophysics Data System (ADS)

Brevik, E. C.

2012-04-01

From its official founding on November 18, 1936 to the present day, the Soil Science Society of America (SSSA) has developed a rich and diverse history. SSSA began with 190 members grouped into six sections: 1) physics, 2) chemistry, 3) microbiology, 4) fertility, 5) morphology, and 6) technology. Today SSSA has over 6,000 members who can choose from any of 11 divisions, S1 Soil Physics, S2 Soil Chemistry, S3 Soil Biology and Biochemistry, S4 Soil Fertility and Plant Nutrition, S5 Pedology, S6 Soil and Water Management and Conservation, S7 Forest, Range, and Wildland Soils, S8 Nutrient Management and Soil and Plant Analysis, S9 Soil Mineralogy, S10 Wetland Soils, and S11 Soils and Environmental Quality to represent their primary area(s) of interest. The Society has also gone from being largely agriculturally focused to an eclectic mix of individuals with interests in agriculture, the environment, earth sciences, human interactions, and other diverse areas. At its founding, SSSA sponsored one publication, the Soil Science Society of America Proceedings. Today, SSSA sponsors its descendent, the Soil Science Society of America Journal, as well as Vadose Zone Journal, the Journal of Environmental Quality, Soil Survey Horizons, and the Journal of Natural Resources and Life Science Education. In short, SSSA's history has been one of continued growth over the last 75 years. The future holds many challenges for SSSA and the field of soil science. There are increasing calls to meet with groups other than or in addition to the American Society of Agronomy and the Crop Science Society of America, groups like the Geological Society of America and the Ecological Society of America. Members in SSSA now work in university departments, government agencies, and businesses representing the fields of biology, geology, geography, and archeology, among others, in addition to the traditional agricultural sector. How SSSA handles this diversification of the field and its membership will influence the future of the Society.

At the heart of soil health

USDA-ARS?s Scientific Manuscript database

Soil health is receiving resurgent attention with a number of recent national soil health initiatives which are sponsored by cooperators from diverse sectors including agribusiness, commodity groups, governmental organizations, and non-profits. The health of the soil is dependent on its biology. A...

Multi-analytical approach reveals potential microbial indicators in soil for sugarcane model systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Navarrete, Acacio Aparecido; Diniz, Tatiana Rosa; Braga, Lucas Palma Perez

This study focused on the effects of organic and inorganic amendments and straw retention on the microbial biomass (MB) and taxonomic groups of bacteria in sugarcane-cultivated soils in a greenhouse mesocosm experiment monitored for gas emissions and chemical factors. The experiment consisted of combinations of synthetic nitrogen (N), vinasse (V; a liquid waste from ethanol production), and sugarcane-straw blankets. Increases in CO 2-C and N 2O-N emissions were identified shortly after the addition of both N and V to the soils, thus increasing MB nitrogen (MB-N) and decreasing MB carbon (MB-C) in the N+V-amended soils and altering soil chemical factorsmore » that were correlated with the MB. Across 57 soil metagenomic datasets, Actinobacteria (31.5%), Planctomycetes (12.3%), Deltaproteobacteria (12.3%), Alphaproteobacteria (12.0%) and Betaproteobacteria (11.1%) were the most dominant bacterial groups during the experiment. Differences in relative abundance of metagenomic sequences were mainly revealed for Acidobacteria, Actinobacteria, Gammaproteobacteria and Verrucomicrobia with regard to N+V fertilization and straw retention. Differential abundances in bacterial groups were confirmed using 16S rRNA gene-targeted phylum-specific primers for real-time PCR analysis in all soil samples, whose results were in accordance with sequence data, except for Gammaproteobacteria. Actinobacteria were more responsive to straw retention with Rubrobacterales, Bifidobacteriales and Actinomycetales related to the chemical factors of N+V-amended soils. Acidobacteria subgroup 7 and Opitutae, a verrucomicrobial class, were related to the chemical factors of soils without straw retention as a surface blanket. Taken together, the results showed that MB-C and MB-N responded to changes in soil chemical factors and CO 2-C and N 2O-N emissions, especially for N+V-amended soils. The results also indicated that several taxonomic groups of bacteria, such as Acidobacteria, Actinobacteria and Verrucomicrobia, and their subgroups acted as early-warning indicators of N+V amendments and straw retention in sugarcane-cultivated soils, which can alter the soil chemical factors.« less

Multi-analytical approach reveals potential microbial indicators in soil for sugarcane model systems

DOE PAGES

Navarrete, Acacio Aparecido; Diniz, Tatiana Rosa; Braga, Lucas Palma Perez; ...

2015-06-09

This study focused on the effects of organic and inorganic amendments and straw retention on the microbial biomass (MB) and taxonomic groups of bacteria in sugarcane-cultivated soils in a greenhouse mesocosm experiment monitored for gas emissions and chemical factors. The experiment consisted of combinations of synthetic nitrogen (N), vinasse (V; a liquid waste from ethanol production), and sugarcane-straw blankets. Increases in CO 2-C and N 2O-N emissions were identified shortly after the addition of both N and V to the soils, thus increasing MB nitrogen (MB-N) and decreasing MB carbon (MB-C) in the N+V-amended soils and altering soil chemical factorsmore » that were correlated with the MB. Across 57 soil metagenomic datasets, Actinobacteria (31.5%), Planctomycetes (12.3%), Deltaproteobacteria (12.3%), Alphaproteobacteria (12.0%) and Betaproteobacteria (11.1%) were the most dominant bacterial groups during the experiment. Differences in relative abundance of metagenomic sequences were mainly revealed for Acidobacteria, Actinobacteria, Gammaproteobacteria and Verrucomicrobia with regard to N+V fertilization and straw retention. Differential abundances in bacterial groups were confirmed using 16S rRNA gene-targeted phylum-specific primers for real-time PCR analysis in all soil samples, whose results were in accordance with sequence data, except for Gammaproteobacteria. Actinobacteria were more responsive to straw retention with Rubrobacterales, Bifidobacteriales and Actinomycetales related to the chemical factors of N+V-amended soils. Acidobacteria subgroup 7 and Opitutae, a verrucomicrobial class, were related to the chemical factors of soils without straw retention as a surface blanket. Taken together, the results showed that MB-C and MB-N responded to changes in soil chemical factors and CO 2-C and N 2O-N emissions, especially for N+V-amended soils. The results also indicated that several taxonomic groups of bacteria, such as Acidobacteria, Actinobacteria and Verrucomicrobia, and their subgroups acted as early-warning indicators of N+V amendments and straw retention in sugarcane-cultivated soils, which can alter the soil chemical factors.« less

Modeling the soil water retention curves of soil-gravel mixtures with regression method on the Loess Plateau of China.

PubMed

Wang, Huifang; Xiao, Bo; Wang, Mingyu; Shao, Ming'an

2013-01-01

Soil water retention parameters are critical to quantify flow and solute transport in vadose zone, while the presence of rock fragments remarkably increases their variability. Therefore a novel method for determining water retention parameters of soil-gravel mixtures is required. The procedure to generate such a model is based firstly on the determination of the quantitative relationship between the content of rock fragments and the effective saturation of soil-gravel mixtures, and then on the integration of this relationship with former analytical equations of water retention curves (WRCs). In order to find such relationships, laboratory experiments were conducted to determine WRCs of soil-gravel mixtures obtained with a clay loam soil mixed with shale clasts or pebbles in three size groups with various gravel contents. Data showed that the effective saturation of the soil-gravel mixtures with the same kind of gravels within one size group had a linear relation with gravel contents, and had a power relation with the bulk density of samples at any pressure head. Revised formulas for water retention properties of the soil-gravel mixtures are proposed to establish the water retention curved surface models of the power-linear functions and power functions. The analysis of the parameters obtained by regression and validation of the empirical models showed that they were acceptable by using either the measured data of separate gravel size group or those of all the three gravel size groups having a large size range. Furthermore, the regression parameters of the curved surfaces for the soil-gravel mixtures with a large range of gravel content could be determined from the water retention data of the soil-gravel mixtures with two representative gravel contents or bulk densities. Such revised water retention models are potentially applicable in regional or large scale field investigations of significantly heterogeneous media, where various gravel sizes and different gravel contents are present.

Modeling the Soil Water Retention Curves of Soil-Gravel Mixtures with Regression Method on the Loess Plateau of China

PubMed Central

Wang, Huifang; Xiao, Bo; Wang, Mingyu; Shao, Ming'an

2013-01-01

Soil water retention parameters are critical to quantify flow and solute transport in vadose zone, while the presence of rock fragments remarkably increases their variability. Therefore a novel method for determining water retention parameters of soil-gravel mixtures is required. The procedure to generate such a model is based firstly on the determination of the quantitative relationship between the content of rock fragments and the effective saturation of soil-gravel mixtures, and then on the integration of this relationship with former analytical equations of water retention curves (WRCs). In order to find such relationships, laboratory experiments were conducted to determine WRCs of soil-gravel mixtures obtained with a clay loam soil mixed with shale clasts or pebbles in three size groups with various gravel contents. Data showed that the effective saturation of the soil-gravel mixtures with the same kind of gravels within one size group had a linear relation with gravel contents, and had a power relation with the bulk density of samples at any pressure head. Revised formulas for water retention properties of the soil-gravel mixtures are proposed to establish the water retention curved surface models of the power-linear functions and power functions. The analysis of the parameters obtained by regression and validation of the empirical models showed that they were acceptable by using either the measured data of separate gravel size group or those of all the three gravel size groups having a large size range. Furthermore, the regression parameters of the curved surfaces for the soil-gravel mixtures with a large range of gravel content could be determined from the water retention data of the soil-gravel mixtures with two representative gravel contents or bulk densities. Such revised water retention models are potentially applicable in regional or large scale field investigations of significantly heterogeneous media, where various gravel sizes and different gravel contents are present. PMID:23555040

Spatial Distribution of Soil Fauna In Long Term No Tillage

NASA Astrophysics Data System (ADS)

Corbo, J. Z. F.; Vieira, S. R.; Siqueira, G. M.

2012-04-01

The soil is a complex system constituted by living beings, organic and mineral particles, whose components define their physical, chemical and biological properties. Soil fauna plays an important role in soil and may reflect and interfere in its functionality. These organisms' populations may be influenced by management practices, fertilization, liming and porosity, among others. Such changes may reduce the composition and distribution of soil fauna community. Thus, this study aimed to determine the spatial variability of soil fauna in consolidated no-tillage system. The experimental area is located at Instituto Agronômico in Campinas (São Paulo, Brazil). The sampling was conducted in a Rhodic Eutrudox, under no tillage system and 302 points distributed in a 3.2 hectare area in a regular grid of 10.00 m x 10.00 m were sampled. The soil fauna was sampled with "Pitfall Traps" method and traps remained in the area for seven days. Data were analyzed using descriptive statistics to determine the main statistical moments (mean variance, coefficient of variation, standard deviation, skewness and kurtosis). Geostatistical tools were used to determine the spatial variability of the attributes using the experimental semivariogram. For the biodiversity analysis, Shannon and Pielou indexes and richness were calculated for each sample. Geostatistics has proven to be a great tool for mapping the spatial variability of groups from the soil epigeal fauna. The family Formicidae proved to be the most abundant and dominant in the study area. The parameters of descriptive statistics showed that all attributes studied showed lognormal frequency distribution for groups from the epigeal soil fauna. The exponential model was the most suited for the obtained data, for both groups of epigeal soil fauna (Acari, Araneae, Coleoptera, Formicidae and Coleoptera larva), and the other biodiversity indexes. The sampling scheme (10.00 m x 10.00 m) was not sufficient to detect the spatial variability for all groups of soil epigeal fauna found in this study.

Fate of metal resistance genes in arable soil after manure application in a microcosm study.

PubMed

Xiong, Wenguang; Zeng, Zhenling; Zhang, Yiming; Ding, Xueyao; Sun, Yongxue

2015-03-01

Manure application contributes to the spread and persistence of metal resistance genes (MRGs) in the environment. We investigated the fate of copper (Cu) and zinc (Zn) resistance genes (pcoA, pcoD and zntA) in arable soil after Cu/Zn-containing manure application. Manure with or without addition of metals (Cu/Zn) was added in a soil microcosm over 2 months. Soil samples were collected for analysis on day 0, 30 and 60. The abundances of all MRGs (pcoA, pcoD and zntA) in manure group were significantly higher than those in untreated soil and manure+metals groups. All MRGs dissipated 1.2-1.3 times faster in manure group (from -90 ± 8% to -93 ± 7%) than those in manure+metals group (from -68 ± 8% to -78 ± 5%). The results indicated that manure from healthy pigs contributed to the occurrence of metals (Cu/Zn) and MRGs (pcoA, pcoD and zntA) in arable soil. The significant effects of manure application on the accumulation of pcoA, pcoD and zntA lasted for 1-2 months. Cu/Zn can slow down the dissipation of pcoA, pcoD and zntA after manure application. This is the first report to investigate the fate of MRGs in soil after manure application. Copyright © 2014 Elsevier Inc. All rights reserved.

Abundance and Relative Distribution of Frankia Host Infection Groups Under Actinorhizal Alnus glutinosa and Non-actinorhizal Betula nigra Trees.

PubMed

Samant, Suvidha; Huo, Tian; Dawson, Jeffrey O; Hahn, Dittmar

2016-02-01

Quantitative polymerase chain reaction (qPCR) was used to assess the abundance and relative distribution of host infection groups of the root-nodule forming, nitrogen-fixing actinomycete Frankia in four soils with similar physicochemical characteristics, two of which were vegetated with a host plant, Alnus glutinosa, and two with a non-host plant, Betula nigra. Analyses of DAPI-stained cells at three locations, i.e., at a distance of less than 1 m (near stem), 2.5 m (middle crown), and 3-5 m (crown edge) from the stems of both tree species revealed no statistically significant differences in abundance. Frankiae generally accounted for 0.01 to 0.04 % of these cells, with values between 4 and 36 × 10(5) cells (g soil)(-1). In three out of four soils, abundance of frankiae was significantly higher at locations "near stem" and/or "middle crown" compared to "crown edge," while numbers at these locations were not different in the fourth soil. Frankiae of the Alnus host infection group were dominant in all samples accounting for about 75 % and more of the cells, with no obvious differences with distance to stem. In three of the soils, all of these cells were represented by strain Ag45/Mut15. In the fourth soil that was vegetated with older A. glutinosa trees, about half of these cells belonged to a different subgroup represented by strain ArI3. In all soils, the remaining cells belonged to the Elaeagnus host infection group represented by strain EAN1pec. Casuarina-infective frankiae were not found. Abundance and relative distribution of Frankia host infection groups were similar in soils under the host plant A. glutinosa and the non-host plant B. nigra. Results did thus not reveal any specific effects of plant species on soil Frankia populations.

Effects of bioturbation on environmental DNA migration through soil media

PubMed Central

2018-01-01

Extracting and identifying genetic material from environmental media (i.e. water and soil) presents a unique opportunity for researchers to assess biotic diversity and ecosystem health with increased speed and decreased cost as compared to traditional methods (e.g. trapping). The heterogeneity of soil mineralogy, spatial and temporal variations however present unique challenges to sampling and interpreting results. Specifically, fate/transport of genetic material in the terrestrial environment represents a substantial data gap. Here we investigate to what degree, benthic fauna transport genetic material through soil. Using the red worm (Eisenia fetida), we investigate how natural movement through artificial soil affect the transport of genetic material. All experiments were run in Frabill® Habitat® II worm systems with approximately 5 cm depth of artificial soil. We selected an “exotic” source of DNA not expected to be present in soil, zebrafish (Danio rerio) tissue. Experiment groups contained homogenized zebrafish tissue placed in a defined location combined with a varying number of worms (10, 30 or 50 worms per experimental group). Experimental groups comprised two controls and three treatment groups (representing different worm biomass) in triplicate. A total of 210 soil samples were randomly collected over the course of 15 days to investigate the degree of genetic transfer, and the rate of detection. Positive detections were identified in 14% - 38% of samples across treatment groups, with an overall detection rate of 25%. These findings highlight two important issues when utilizing environmental DNA for biologic assessments. First, benthic fauna are capable of redistributing genetic material through a soil matrix. Second, despite a defined sample container and abundance of worm biomass, as many as 86% of the samples were negative. This has substantial implications for researchers and managers who wish to interpret environmental DNA results from terrestrial systems. Studies such as these will aid in future study protocol design and sample collection methodology. PMID:29689092

Species identities, not functional groups, explain the effects of earthworms on litter carbon-derived soil respiration

USDA-ARS?s Scientific Manuscript database

Soil respiration is frequently measured as a surrogate for biological activities and is important in soil carbon cycling. The heterotrophic component of soil respiration is primarily driven by microbial decomposition of leaf litter and soil organic matter, and is partially controlled by resource ava...

Mathematical models application for mapping soils spatial distribution on the example of the farm from the North of Udmurt Republic of Russia

NASA Astrophysics Data System (ADS)

Dokuchaev, P. M.; Meshalkina, J. L.; Yaroslavtsev, A. M.

2018-01-01

Comparative analysis of soils geospatial modeling using multinomial logistic regression, decision trees, random forest, regression trees and support vector machines algorithms was conducted. The visual interpretation of the digital maps obtained and their comparison with the existing map, as well as the quantitative assessment of the individual soil groups detection overall accuracy and of the models kappa showed that multiple logistic regression, support vector method, and random forest models application with spatial prediction of the conditional soil groups distribution can be reliably used for mapping of the study area. It has shown the most accurate detection for sod-podzolics soils (Phaeozems Albic) lightly eroded and moderately eroded soils. In second place, according to the mean overall accuracy of the prediction, there are sod-podzolics soils - non-eroded and warp one, as well as sod-gley soils (Umbrisols Gleyic) and alluvial soils (Fluvisols Dystric, Umbric). Heavy eroded sod-podzolics and gray forest soils (Phaeozems Albic) were detected by methods of automatic classification worst of all.

Determination of the soil hazardous concentrations of bisphenol A using the species sensitivity approach.

PubMed

Kwak, Jin Il; Moon, Jongmin; Kim, Dokyung; Cui, Rongxue; An, Youn-Joo

2018-02-15

This study describes the determination of the species sensitivity distribution (SSD)-based soil hazardous contamination of bisphenol A for environmental risk assessment. We conducted a battery of bioassays, including acute assays using eight species from six different taxonomic groups and chronic assays using five species from four different taxonomic groups. We determined that our dataset satisfied Australia & New Zealand's guidelines for applying the SSD methodology. Finally, the chronic soil HC 5 and HC 50 values for bisphenol A were estimated to be 13.7 and 74.7mg/kg soil, respectively, for soil ecosystem protection against chronic exposure using the data generated from this and previous studies. Because the soil standard values of bisphenol A for protection of the soil ecosystem are not currently available, the HC values of bisphenol A that we suggested based on the SSD approach would be applied as fundamental data to establish soil standards of bisphenol A for soil ecosystem protection. To our knowledge, this is the first study reporting the soil hazardous concentration of bisphenol A for environmental risk assessment. Copyright © 2017 Elsevier B.V. All rights reserved.

Risk assessment and vertical distribution of thallium in paddy soils and uptake in rice plants irrigated with acid mine drainage.

PubMed

Huang, Xuexia; Li, Ning; Wu, Qihang; Long, Jianyou; Luo, Dinggui; Zhang, Ping; Yao, Yan; Huang, Xiaowu; Li, Dongmei; Lu, Yayin; Liang, Jianfeng

2016-12-01

The objective of this paper is to assess the influence of irritating paddy fields with acid mine drainage containing thallium (Tl) to rice plant-soil system and potential health risks for local residents. Vertical distribution of Tl, pH, organic matter (OM), and cation exchange capacity (CEC) in 24 paddy soil profiles around Yunfu pyrite mine area was investigated. Rice plant samples were collected from the corresponding soil sampling site. The results showed that Tl concentrations in paddy soils at 0-60 cm depth range from 3.07 to 9.42 mg kg -1 , with a mean of 5.74 mg kg -1 , which were significantly higher than the background value of soil in China (0.58 mg kg -1 ). On the whole, Tl contents in paddy soil profiles increased quickly with soil depth from 0 to 30 cm and decreased slowly with soil depth from 30 to 60 cm. The soil Tl content was significant negatively correlated with soil pH. The mean content of Tl in the root, stem, leaf, and rice was 4.36, 1.83, 2.74, and 1.42 mg kg -1 , respectively, which exceeded the proposed permissible limits for foods and feedstuffs in Germany. The Tl content in various tissues of the rice plants followed the order root > leaf > stem (rice), which suggested that most Tl taken up by rice plants retained in the root, and a little migrated to the leaf, stem, and rice. Correlation analysis showed that Tl content in root was significant positively correlated with Tl content in leaf and rice. The ranges of hazard quotient (HQ) values were 4.08∼24.50 and 3.84∼22.38 for males and females, respectively. Males have higher health risk than females in the same age group. In childhood age groups (2 to <21 years) and adult age groups (21 to <70 years), the highest health risk level was observed in the 11 to 16 age group and 21 to 50 age group, respectively. The findings indicated that regular irrigation with Tl-bearing acid mine drainage led to considerable contamination of Tl in paddy soil and rice plant. Local government should take various measures to treat Tl contamination, especially the tailings.

Site Index Tables for Shortleaf Pine In the Ozark Highlands of Northern Arkansas and Southern Missouri

Treesearch

Edwin R. Ferguson; David L. Graney

1975-01-01

Field guides are presented for estimating site index on each of the three major soil groups in the Ozark Highland Province: limestone-dolomite, sandstone, and fragipan soils. Factors utilized vary by soil groups but include aspect, township, slope shape and depth to pan, with adjustments for hardwood competition. Tabular predictions were within ± 3 feet of measured...

A modern soil carbon stock baseline for the conterminous United States

NASA Astrophysics Data System (ADS)

Loecke, T.; Wills, S. A.; Teachman, G.; Sequeira, C.; West, L.; Wijewardane, N.; Ge, Y.

2016-12-01

The Rapid Carbon Assessment Project was undertaken to ascertain the soil carbon stocks across the conterminous US at one point in time. Sample locations were chosen randomly from the NRI (National Resource Inventory) sampling framework and cover all areas in CONUS with SSURGO certified maps as of Dec 2010. The project was regionalized into 17 areas for logistical reasons. Within each region, soils were grouped by official series description properties. Sites were selected by soil groups and land use/cover as indicated by NRI or NLCD (USGS National Land Cover Dataset) class so that more extensive soils groups and/or land use/covers received more points and less extensive fewer points (with a minimum of 5 sites). Each region had 375 - 400 sites, for a total of approximately 6,400 sites. At each site, basic information about land use, vegetation and management were collected as appropriate and available. Samples were collected from 5 pedons (a central and 4 satellites) per site to a depth of 1m, at 0 - 5cm and by genetic horizon. A volumetric sample was collected for horizons above 50 cm to determine bulk density. For horizons below 50cm (or when a volumetric sample could not be obtained) bulk density was modeled from morphological information. All samples were air dried and crushed to <2mm. The central pedon was analyzed for total and organic carbon at the Kellogg Soil Science Laboratory in Lincoln, NE. A visible near-infrared (VNIR) spectrophotometer was used to predict organic and inorganic carbon contents for all satellites samples. A Hierarchical Bayesian statistical approach was used to estimate C stocks, concentrations, and uncertainty for each sampling level (i.e., CONUS, region, soil group, landuse and site). Carbon concentration and stocks were summarized by surface horizon and depth increments for sites, soil groups, and land use/groups and mapped by linking the values to a raster of SSURGO (Jan 2012) that includes map unit and NLCD classification. This modern soil C stock baseline data set will be useful for many application in climate science and biogeochemistry.

Successive DNA extractions improve characterization of soil microbial communities

PubMed Central

de Hollander, Mattias; Smidt, Hauke; van Veen, Johannes A.

2017-01-01

Currently, characterization of soil microbial communities relies heavily on the use of molecular approaches. Independently of the approach used, soil DNA extraction is a crucial step, and success of downstream procedures will depend on how well DNA extraction was performed. Often, studies describing and comparing soil microbial communities are based on a single DNA extraction, which may not lead to a representative recovery of DNA from all organisms present in the soil. The use of successive DNA extractions might improve soil microbial characterization, but the benefit of this approach has only been limitedly studied. To determine whether successive DNA extractions of the same soil sample would lead to different observations in terms of microbial abundance and community composition, we performed three successive extractions, with two widely used commercial kits, on a range of clay and sandy soils. Successive extractions increased DNA yield considerably (1–374%), as well as total bacterial and fungal abundances in most of the soil samples. Analysis of the 16S and 18S ribosomal RNA genes using 454-pyrosequencing, revealed that microbial community composition (taxonomic groups) observed in the successive DNA extractions were similar. However, successive DNA extractions did reveal several additional microbial groups. For some soil samples, shifts in microbial community composition were observed, mainly due to shifts in relative abundance of a number of microbial groups. Our results highlight that performing successive DNA extractions optimize DNA yield, and can lead to a better picture of overall community composition. PMID:28168105

A soil microcosm to test the effects of pollutants on soil nematode and microarthropod communities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Parmelee, R.W.; Wentsel, R.S.; Checkai, R.T.

1995-12-31

Previous studies have demonstrated that microcosms with field collected soil nematode and microarthropod communities are suitable model systems to detect effects of toxins on soil food web structure and function. The authors investigated the toxicity of copper, cadmium, malathion, and Aroclor 1254 to nematodes (total, bacterivores, fungivores, herbivores, omnivore-predators, hatchlings) and microarthropods (Prostigmata, Mesostigmata, Oribatida, Collembola, other arthropods). Nematodes were sensitive indicators of copper application, and total numbers were reduced at 100 {micro}g g{sup {minus}1}. Fungivore, bacterivore and omnivore-predators were the most susceptible trophic groups. Cadmium had no effects on either nematode or microarthropod communities. Microarthropods were more sensitive tomore » malathion than nematodes, and total microarthropod abundance was lower than controls at 320 {micro}g g{sup {minus}1}. Prostigmatid mites and other arthropods were the most affected groups. Only the herbivore nematode trophic group was affected by malathion, and numbers did not decline until 1,280 {micro}g g{sup {minus}1}. Aroclor 1254 also had a greater negative impact on microarthropods than on nematodes. Total microarthropod abundance declined at 2,500 {micro}g g{sup {minus}1}, while there was no effect on nematodes. Prostigmatid and oribatid mites were the most susceptible groups to PCB application. Strong differential sensitivity between nematode and microarthropod communities indicates that both groups need to be examined to fully evaluate the impact of chemicals on soil systems. The authors conclude that microcosms with field-collected communities of soil microfauna offer high resolution of the ecotoxicological effects of chemicals in complex soil systems.« less

Pyrolysis temperature influences ameliorating effects of biochars on acidic soil.

PubMed

Wan, Qing; Yuan, Jin-Hua; Xu, Ren-Kou; Li, Xing-Hui

2014-02-01

The biochars were prepared from straws of canola, corn, soybean, and peanut at different temperatures of 300, 500, and 700 °C by means of oxygen-limited pyrolysis.Amelioration effects of these biochars on an acidic Ultisol were investigated with incubation experiments, and application rate of biochars was 10 g/kg. The incorporation of these biochars induced the increase in soil pH, soil exchangeable base cations, base saturation, and cation exchange capacity and the decrease in soil exchangeable acidity and exchangeable Al. The ameliorating effects of biochars on acidic soil increased with increase in their pyrolysis temperature. The contribution of oxygen-containing functional groups on the biochars to their ameliorating effects on the acidic soil decreased with the rise in pyrolysis temperature, while the contribution from carbonates in the biochars changed oppositely. The incorporation of the biochars led to the decrease in soil reactive Al extracted by 0.5mol/L CuCl2, and the content of reactive Al was decreased with the increase in pyrolysis temperature of incorporated biochars. The biochars generated at 300 °C increased soil organically complexed Al due to ample quantity of oxygen-containing functional groups such as carboxylic and phenolic groups on the biochars, while the biochars generated at 500 and 700 °C accelerated the transformation of soil exchangeable Al to hydroxyl-Al polymers due to hydrolysis of Al at higher pH. Therefore, the crop straw-derived biochars can be used as amendments for acidic soils and the biochars generated at relatively high temperature have great ameliorating effects on the soils.

Impact of Grassland Reseeding, Herbicide Spraying and Ploughing on Diversity and Abundance of Soil Arthropods.

PubMed

Liu, Wei; Zhang, Junling; Norris, Stuart L; Murray, Philip J

2016-01-01

In order to determine the interactive effect of reseeding, herbicide spraying and ploughing on soil fauna communities, we conducted a grassland reseeding experiment combined with pre-reseed management to examine how with the whole reseeding process affects soil faunal composition. Sampling occasions and exact treatments were as follows: (1) before chemical herbicide spray; (2) after spray but before ploughing; (3) after ploughing but before reseeding; and (4) after 1 year of recovery. Our results demonstrate that, Acari and Collembola were the two soil fauna taxa with the highest abundance and accounted for around 96% of the relative total abundance among the various managements. Herbicide application tended to increase soil invertebrate abundance. Conversely, subsequent ploughing significantly reduced soil invertebrate abundance and had an obvious negative effect on soil primary and secondary decomposers, which were mainly due to the variations of Acari (especially Oribatida) and Coleoptera group abundance. Moreover, reseeding also reduced the individual number of the groups mentioned above, and favored those predators with a larger body size and individual weight. After 1 year recovery, Collembola abundance recovered to the pre-treatment levels, while with Arthropod and Acari groups were still fluctuating.

Impact of Grassland Reseeding, Herbicide Spraying and Ploughing on Diversity and Abundance of Soil Arthropods

PubMed Central

Liu, Wei; Zhang, Junling; Norris, Stuart L.; Murray, Philip J.

2016-01-01

In order to determine the interactive effect of reseeding, herbicide spraying and ploughing on soil fauna communities, we conducted a grassland reseeding experiment combined with pre-reseed management to examine how with the whole reseeding process affects soil faunal composition. Sampling occasions and exact treatments were as follows: (1) before chemical herbicide spray; (2) after spray but before ploughing; (3) after ploughing but before reseeding; and (4) after 1 year of recovery. Our results demonstrate that, Acari and Collembola were the two soil fauna taxa with the highest abundance and accounted for around 96% of the relative total abundance among the various managements. Herbicide application tended to increase soil invertebrate abundance. Conversely, subsequent ploughing significantly reduced soil invertebrate abundance and had an obvious negative effect on soil primary and secondary decomposers, which were mainly due to the variations of Acari (especially Oribatida) and Coleoptera group abundance. Moreover, reseeding also reduced the individual number of the groups mentioned above, and favored those predators with a larger body size and individual weight. After 1 year recovery, Collembola abundance recovered to the pre-treatment levels, while with Arthropod and Acari groups were still fluctuating. PMID:27555863

Exploration of geo-mineral compounds in granite mining soils using XRD pattern data analysis

NASA Astrophysics Data System (ADS)

Koteswara Reddy, G.; Yarakkula, Kiran

2017-11-01

The purpose of the study was to investigate the major minerals present in granite mining waste and agricultural soils near and away from mining areas. The mineral exploration of representative sub-soil samples are identified by X-Ray Diffractometer (XRD) pattern data analysis. The morphological features and quantitative elementary analysis was performed by Scanning Electron Microscopy-Energy Dispersed Spectroscopy (SEM-EDS).The XRD pattern data revealed that the major minerals are identified as Quartz, Albite, Anorthite, K-Feldspars, Muscovite, Annite, Lepidolite, Illite, Enstatite and Ferrosilite in granite waste. However, in case of agricultural farm soils the major minerals are identified as Gypsum, Calcite, Magnetite, Hematite, Muscovite, K-Feldspars and Quartz. Moreover, the agricultural soils neighbouring mining areas, the minerals are found that, the enriched Mica group minerals (Lepidolite and Illite) the enriched Orthopyroxene group minerals (Ferrosilite and Enstatite). It is observed that the Mica and Orthopyroxene group minerals are present in agricultural farm soils neighbouring mining areas and absent in agricultural farm soils away from mining areas. The study demonstrated that the chemical migration takes place at agricultural farm lands in the vicinity of the granite mining areas.

Scale Model of a Soil Aggregate and Associated Organisms: A Teaching Tool for Soil Ecology

ERIC Educational Resources Information Center

Bruns, Mary Ann; Byrne, Loren B.

2004-01-01

Soil is a complex habitat for diverse biota. A significant challenge in teaching soil ecology is our inability to observe organisms as they live and interact in the soil. The objective of this article is to describe an interactive class project to help students visualize the sizes of different groups of soil organisms and to relate these to soil…

Water soluble cations and the fluvial history of Mars

NASA Technical Reports Server (NTRS)

Silverman, M. P.; Munoz, E. F.

1975-01-01

The electrical conductivity and water soluble Na, K, Ca, and Mg of aqueous solutions of terrestrial soils and finely divided igneous and metamorphic rocks were determined. Soils from dry terrestrial basins with a history of water accumulation as well as soils from the topographic lows of valleys accumulated water soluble cations, particularly Na and Ca. These soils as a group can be distinguished from the rocks or a second group of soils (leached upland soils and soils from sites other than the topographic lows of valleys) by significant differences in their mean electrical conductivity and water-soluble Na + Ca content. Similar measurements on multiple samples from the surface of Mars, collected by an automated long-range roving vehicle along a highlands-to-basin transect at sites with morphological features resembling dry riverlike channels, are suggested to determine the fluvial history of the planet.

Comparing the efficiency of digital and conventional soil mapping to predict soil types in a semi-arid region in Iran

NASA Astrophysics Data System (ADS)

Zeraatpisheh, Mojtaba; Ayoubi, Shamsollah; Jafari, Azam; Finke, Peter

2017-05-01

The efficiency of different digital and conventional soil mapping approaches to produce categorical maps of soil types is determined by cost, sample size, accuracy and the selected taxonomic level. The efficiency of digital and conventional soil mapping approaches was examined in the semi-arid region of Borujen, central Iran. This research aimed to (i) compare two digital soil mapping approaches including Multinomial logistic regression and random forest, with the conventional soil mapping approach at four soil taxonomic levels (order, suborder, great group and subgroup levels), (ii) validate the predicted soil maps by the same validation data set to determine the best method for producing the soil maps, and (iii) select the best soil taxonomic level by different approaches at three sample sizes (100, 80, and 60 point observations), in two scenarios with and without a geomorphology map as a spatial covariate. In most predicted maps, using both digital soil mapping approaches, the best results were obtained using the combination of terrain attributes and the geomorphology map, although differences between the scenarios with and without the geomorphology map were not significant. Employing the geomorphology map increased map purity and the Kappa index, and led to a decrease in the 'noisiness' of soil maps. Multinomial logistic regression had better performance at higher taxonomic levels (order and suborder levels); however, random forest showed better performance at lower taxonomic levels (great group and subgroup levels). Multinomial logistic regression was less sensitive than random forest to a decrease in the number of training observations. The conventional soil mapping method produced a map with larger minimum polygon size because of traditional cartographic criteria used to make the geological map 1:100,000 (on which the conventional soil mapping map was largely based). Likewise, conventional soil mapping map had also a larger average polygon size that resulted in a lower level of detail. Multinomial logistic regression at the order level (map purity of 0.80), random forest at the suborder (map purity of 0.72) and great group level (map purity of 0.60), and conventional soil mapping at the subgroup level (map purity of 0.48) produced the most accurate maps in the study area. The multinomial logistic regression method was identified as the most effective approach based on a combined index of map purity, map information content, and map production cost. The combined index also showed that smaller sample size led to a preference for the order level, while a larger sample size led to a preference for the great group level.

Aggregating available soil water holding capacity data for crop yield models

NASA Technical Reports Server (NTRS)

Seubert, C. E.; Daughtry, C. S. T.; Holt, D. A.; Baumgardner, M. F.

1984-01-01

The total amount of water available to plants that is held against gravity in a soil is usually estimated as the amount present at -0.03 MPa average water potential minus the amount present at -1.5 MPa water potential. This value, designated available water-holding capacity (AWHC), is a very important soil characteristic that is strongly and positively correlated to the inherent productivity of soils. In various applications, including assessing soil moisture status over large areas, it is necessary to group soil types or series as to their productivity. Current methods to classify AWHC of soils consider only total capacity of soil profiles and thus may group together soils which differ greatly in AWHC as a function of depth in the profile. A general approach for evaluating quantitatively the multidimensional nature of AWHC in soils is described. Data for 902 soil profiles, representing 184 soil series, in Indiana were obtained from the Soil Characterization Laboratory at Purdue University. The AWHC for each of ten 150-mm layers in each soil was established, based on soil texture and parent material. A multivariate clustering procedure was used to classify each soil profile into one of 4, 8, or 12 classes based upon ten-dimensional AWHC values. The optimum number of classes depends on the range of AWHC in the population of oil profiles analyzed and on the sensitivity of a crop to differences in distribution of water within the soil profile.

Soil bacterial community response to vegetation succession after fencing in the grassland of China.

PubMed

Zeng, Quanchao; An, Shaoshan; Liu, Yang

2017-12-31

Natural succession is an important process in terrestrial system, playing an important role in enhancing soil quality and plant diversity. Soil bacteria is the linkage between soil and plant, has an important role in aboveground community dynamics and ecosystem functioning in terrestrial ecosystems, driving the decomposition of soil organic matter and plant litter. However, the role of soil bacteria in the secondary succession has not been well understood, particularly in the degraded soil of Loess Plateau. In this study, we investigated soil nutrients and soil bacterial community during the secondary succession after a long-term fencing in the grassland, in the Yuwu Mountain, northwest China. The chronosequence included 1year, 12years, 20years and 30years. The soil bacterial community composition was determined by the Illumina HiSeq sequencing method. The data showed that soil bacterial diversity had no significant changes along the chronosequence, but soil bacterial community compositions significantly changed. Proteobacteria, Acidobacteria and Actinobacteria were the main phyla in all the samples across succession. With the accumulation of soil organic matter and nutrients, the relative abundance of Actinobacteria decreased, whereas Proteobacteria increased. These shifts may be caused by the increase of the available nutrients across the secondary succession. In the younger sites, soils were dominated by oligotrophic groups, whereas soil in the late-succession site were dominated by copiotrophic groups, indicating the dependence of soil bacterial community composition on the contents of soil available nutrients. Copyright © 2017 Elsevier B.V. All rights reserved.

On-farm soil health evaluations: Challenges and opportunities

USDA-ARS?s Scientific Manuscript database

Interest in soil health (or soil quality) by producers, conservationists, environmentalists, agricultural scientists, policy makers and many other groups has increased exponentially during the past five years. Yet the question remains: Can soil health be measured at the field or farm scale and can t...

Human relations with soil are changing rapidly: SSSA's new Work Group on Soil Change

USDA-ARS?s Scientific Manuscript database

Humanity has rapidly become Earth’s chief agent of soil change, and geologists have named the epoch in which we live the Anthropocene, due to the global scale of human impact on the environment, including soil. In response to the increasing influence of humans on soil processes, the disciplines of ...

Determining the effects of pollutants on soil faunal communities and trophic structure using a refined microcosm system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Parmelee, R.W.; Phillips, C.T.; Checkai, R.T.

1997-06-01

The authors used a refined microcosm technique to investigate the toxicity of copper, cadmium, malathion, and the polychlorinated biphenyl, to trophic groups of soil nematodes and to the microarthropod community. Comparisons of changes in nematode abundance in control soils through time indicated that day 7 was the most appropriate time to sample the microcosms after chemical application. Nematode abundance was reduced after exposure to copper at 100 {micro}g/g, with fungivore, bacterivore, and omnivore-predator nematodes being the most sensitive groups. Cadmium did not affect the nematode or microarthropod communities. Microarthropods were far more sensitive to malathion than were nematodes, and totalmore » microarthropod abundance was lower than controls at 400 {micro}g/g. Prostigmatid mites and other arthropods were the most affected groups. PCB also had a greater negative impact on microarthropods than on nematodes. Total microarthropod abundance declined at 2,500 {micro}g/g, with prostigmatid and oribatid mites exhibiting the highest susceptibility. Strong differential sensitivity between nematode and microarthropod communities indicates that both groups should be examined to fully evaluate the biological impact of chemicals on soils. The authors conclude that microcosms with field-collected soil microfaunal communities offer high resolution of the ecotoxicologic effects of chemicals in complex soil systems.« less

Relationships among multiple trace elements in coastal Casuarina equisetifolia ecosystems on Hainan Island, South China.

PubMed

Liu, Qiang; Bi, Hua; Hung, Lan; Peng, Shaolin; Sheng, Chengde

2006-01-01

Forty-six trace elements in coastal Casuarina equisetifolia plant-soil systems at nine sampling sites on Hainan Island were analyzed using ICP-MS. The relationships among the trace elements of the same group or the same periodicity of the Periodic Table in the plants and soils were complex and no consistent patterns were found. More combinations of elements occurred with high positive correlation coefficients within the same periodicity than within the same group of the Periodic Table, and there were more high positive correlations in soils than in plants. However, there were many element combinations in Block d (transition elements) with high positive correlation coefficients in plants. Markedly high positive correlation coefficients between individual rare earth elements and Y and among Zr, Nb, Cd existed in both plants and soils. The dendrograms obtained by cluster analysis show that rare earth elements had very similar occurrence and distribution in both soils and plants. Thus, they behaved as a coherent group of elements both geochemically and biogeochemically. The transition elements were more coherent in plants than in soils.

[Restoration of microbial ammonia oxidizers in air-dried forest soils upon wetting].

PubMed

Zhou, Xue; Huang, Rong; Song, Ge; Pan, Xianzhang; Jia, Zhongjun

2014-11-04

This study was aimed to investigate the abundance and community shift of ammonia-oxidizing archaea (AOA) and bacteria (AOB) in air-dried forest soils in response to water addition, to explore the applicability of air-dried soil for microbial ecology study, and to elucidate whether AOA within the marine group 1. 1a dominate ammonia oxidizers communities in the acidic forest soils in China. Soil samples were collected from 10 forest sites of the China Ecosystem Research Network (CERN) and kept under air-drying conditions in 2010. In 2013 the air-dried soil samples were adjusted to 60% of soil maximum water holding capacity for a 28-day incubation at 28 degrees C in darkness. DGGE fingerprinting, clone library construction, pyrosequencing and quantitative PCR of amoA genes were performed to assess community change of ammonia oxidizers in air-dried and re-wetted soils. After incubation for 28 days, the abundance of bacteria and archaea increased significantly, up to 3,230 and 568 times, respectively. AOA increased significantly in 8 samples, and AOB increased significantly in 5 of 10 samples. However, pyrosequencing of amoA genes reveals insignificant changes in composition of AOA and AOB communities. Phylogenetic analysis of amoA genes indicates that archaeal ammonia oxidizers were predominated by AOA within the soil group 1. 1b lineage, while the Nitrosospira-like AOB dominate bacteria ammonia oxidizer communities. There was a significantly positive correlation between AOA/AOB ratio and total nitrogen (r2 = 0.54, P < 0.05), implying that soil ammonia oxidation might be dominated by AOA in association with ammonium released from soil mineralization. Phylogenetic analysis suggest that AOA members within the soil group 1. 1b lineage were not restricted to non-acidic soils as previously thought. The abundance rather than composition of AOA and AOB changed in response to water addition. This indicates that air-dried soil could be of help for microbial biogeography study.

The nature and classification of Australian soils affected by sodium

NASA Astrophysics Data System (ADS)

Murphy, Brian; Greene, Richard; Harms, Ben

2017-04-01

Large areas of Australia are affected by the processes of salinity and sodicity and they are important processes to understand as they can result in the degradation of agricultural lands used for both intensive cropping and extensive grazing practices. Sodic soils are defined as those having ESP of at least 6% in Australia. Northcote and Skene (1972) estimated that of Australia's total area of 770 M ha, 39 M ha was affected by salinity and 193-257 M ha by sodicity. However, in a more recent publication, Rengasamy (2006), quoted the areas of saline and sodic soils as 66 M ha and 340 M ha respectively. The soils affected by sodium in Australia include a large group of contrasting soils (Northcote and Skene 1972). Based on the Australian soil classification, included are: • Alkaline strongly sodic to sodic clay soils with uniform texture profiles - largely Vertosols 666 400 km2 • Alkaline strongly sodic to sodic coarse and medium textured soils with uniform and gradational texture profiles - largely Calcarosols 600 700 km2 • Alkaline strongly sodic to sodic texture contrast soils - largely Sodosols 454 400 km2 • Non-alkaline sodic and strongly sodic neutral texture contrast soils - largely Sodosols 134 700 km2 • Non-alkaline sodic acid texture contrast soils - Sodosols and Kurosols 140 700 km2 Many Australian sodic soils have not developed by the traditional solonetz process of leaching of a solonchak, but rather have developed by the accumulation of sodium on the cation exchange complex in preference to the other exchangeable cations without any recognisable intermediate saline phase occurring. This is especially the case for the sodic, non-alkaline texture contrast soils or Sodosols. The major sodic soil group in WRB is the Solonetz soils. These require the presence of a Natric horizon which has to contain illuviated clay and at least 15% ESP. However, there is provision for Sodic qualifiers with at least 6% ESP for many other reference Soil Groups including the Vertisols, Luvisols, Calcisols and Planosols which would have some relationship to Australia's sodic soils.

Geotechnical Materials Database for Embankment Design and Construction

DOT National Transportation Integrated Search

2011-12-01

This project was focused on the assimilation of engineering properties of borrow soils across the state of : South Carolina. Extensive data on soils used for embankment construction were evaluated and compared : within Group A (Piedmont) and Group B ...

Granite Rock Outcrops: An Extreme Environment for Soil Nematodes?

PubMed Central

Austin, Erin; Semmens, Katharine; Parsons, Charles

2009-01-01

We studied soil nematode communities from the surface of granite flatrock outcrops in the eastern Piedmont region of the United States. The thin soils that develop here experience high light intensity and extreme fluctuations in temperature and moisture and host unique plant communities. We collected soils from outcrop microsites in Virginia (VA) and North Carolina (NC) in various stages of succession (Primitive, Minimal, and Mature) and compared soil properties and nematode communities to those of adjacent forest soils. Nematodes were present in most outcrop soils, with densities comparable to forest soils (P > 0.05). Nematode communities in Mature and Minimal soils had lower species richness than forest soils (P < 0.05) and contained more bacterial-feeders and fewer fungal-feeders (P < 0.05). Primitive soils contained either no nematodes (NC) or only a single species (Mesodorylaimus sp., VA). Nematode communities were similar between Mature and Minimal soils, according to trophic group representation, MI, PPI, EI, SI, and CI (P > 0.05). Forest soils had a higher PPI value (P < 0.05), but otherwise community indices were similar to outcrop soils (P > 0.05). Outcrop nematode communities failed to group together in a Bray-Curtis cluster analysis, indicating higher variability in community structure than the Forest soils, which did cluster together. A high proportion of the nematodes were extracted from outcrop soils in coiled form (33-89%), indicating that they used anhydrobiosis to persist in this unique environment. PMID:22661780

Eukaryal composition and diversity in anaerobic soils influenced by the novel chiral insecticide Paichongding.

PubMed

Zhu, Xiaolin; Zhou, Shaomin; Guo, Jing; Zhao, Xiyue; Yang, Guanghua; Cai, Zhiqiang

2018-04-18

Paichongding (IPP) is a neonicotinoid chiral insecticide with independent intellectual property in China. IPP application can increase crop yield, and also lead to insecticide residue and pollution in soils, which will affect microbial population and community composition in soils. In this study, four different types of soils were employed to inquire into the impact of IPP on eukaryal community and species-group through pyrosequencing of 18S rRNA gene amplicons. Fungal population differed in different soils at different days after IPP treatment (DAT). Eukaryal community species in CK (control check) groups were more rich than that with Paichongding sprayed at 5 DAT, while eukaryal species in CK soils at 60 DAT was relatively slight. Shannon's H' analysis indicated fungal species in CK soils were also higher at 5 DAT and relative lower at 60 DAT, except in soil C. There are also differences in the phyla and genus levels of the eukaryotic communities in the soil. After IPP application, the relative abundance of Nectriaceae increased 3-4 times in soil C. In soil F, Phaeosphaeriaceae increased to 57.3% at 5 DAT. The genus of Guehomyces, Aspergillus and Alternaria increased from 3.1 to 9.7, 1.1 to 4.6, 1.5 to 6.7% in soil H, respectively.

Influence of Soil Properties on Soldierless Termite Distribution.

PubMed

Bourguignon, Thomas; Drouet, Thomas; Šobotník, Jan; Hanus, Robert; Roisin, Yves

2015-01-01

In tropical rainforests, termites constitute an important part of the soil fauna biomass, and as for other soil arthropods, variations in soil composition create opportunities for niche partitioning. The aim of this study was twofold: first, we tested whether soil-feeding termite species differ in the foraging substrate; second, we investigated whether soil-feeding termites select their foraging sites to enhance nutrients intake. To do so, we collected termites and analysed the composition and structure of their feeding substrates. Although Anoplotermes-group members are all considered soil-feeders, our results show that some species specifically feed on abandoned termite nests and very rotten wood, and that this substrate selection is correlated with previous stable isotope analyses, suggesting that one component of niche differentiation among species is substrate selection. Our results show that the composition and structure of bare soils on which different termite species foraged do not differ, suggesting that there is no species specialization for a particular type of bare soil. Finally, the bare soil on which termites forage does not differ from random soil samples. Overall, our results suggest that few species of the Anoplotermes-group are specialized toward substrates rich in organic matter, but that the vast majority forage on soil independently of its structural and chemical composition, being ecologically equivalent for this factor.

Should there be a "Wet" Soil Order in Soil Taxonomy?

NASA Astrophysics Data System (ADS)

Rabenhorst, Martin; Wessel, Barret; Stolt, Mark; Lindbo, David

2017-04-01

Early soil classification systems recognized wet soils at the highest categorical level. Among the Intrazonal Soils of the US classification utilized between the 1920s and 1960, were included as Great Soil Groups, the Wiesenboden, Bog, Half-Bog, Ground-Water Podzols and Ground-Water Laterites. In other systems, groups named with such terms as ground water gley and pseudogley were also used. With the advent of Soil Taxonomy and it's precursor (1960, 1975), Histosols (organic soils) were distinguished as one of the initial 10 soil orders, and while many of these organic soils are wet soils, some are not (Folists for example). Thus, for over 50 years, with the exception of Histosols, wet soils (which typically represent the wettest end of subaerial wet soils) have not been collectively recognized within taxa at the highest categorical level (order) in the US soil classification system. Rather, the wettest soils were designated at the second categorical level as wet (Aqu) suborders among the various soil orders, and more recently, subaqueous soils as "Wass" suborders of Entisols and Histosols. Soils with less-wet conditions have been recognized at the subgroup (4th) level. Further, in impoundments and regions of transgressing coastlines, submerged upland soils have been found that still classify in soil orders that do not accommodate subaqueous soils ("Wass" suborders). Notwithstanding, other contemporary soil classification systems do (have continued to) recognize wet soils at the highest level. In the World Reference Base (WRB) for example, wet soils are designated as Gleysols or Stagnosols. As efforts are underway to revisit, simplify, and revise Soil Taxonomy, questions have been raised regarding whether wet soils should again be moved back with a place among taxa at the highest category using a name such as Hydrasols, Aquasols, etc. This paper will explore and consider the questions and arguments for and against such proposals and the difficult question regarding where along the soil wetness continuum would be the best point for recognizing a wet soil order.

Migratory bird habitat in relation to tile drainage and poorly drained hydrologic soil groups

USGS Publications Warehouse

Kastner, Brandi; Christensen, Victoria G.; Williamson, Tanja N.; Sanocki, Chris A.

2016-01-01

The Prairie Pothole Region (PPR) is home to more than 50% of the migratory waterfowl in North America. Although the PPR provides an abundance of temporary and permanent wetlands for nesting and feeding, increases in commodity prices and agricultural drainage practices have led to a trend of wetland drainage. The Northern Shoveler is a migratory dabbling duck species that uses wetland habitats and cultivated croplands in the PPR. Richland County in North Dakota and Roberts County in South Dakota have an abundance of wetlands and croplands and were chosen as the study areas for this research to assess the wetland size and cultivated cropland in relation to hydrologic soil groups for the Northern Shoveler habitat. This study used geographic information system data to analyze Northern Shoveler habitats in association with Natural Resource Conservation Service soil data. Habitats, which are spatially associated with certain hydrologic soil groups, may be at risk of artificial drainage installations because of their proximity to cultivated croplands and soil lacking in natural drainage that may become wet or inundated. Findings indicate that most wetlands that are part of Northern Shoveler habitats were within or adjacent to cultivated croplands. The results also revealed soil hydrologic groups with high runoff potential and low water transmission rates account for most of the soil within the Northern Shoveler‘s wetland and cropland habitats. Habitats near agriculture with high runoff potential are likely to be drained and this has the potential of reducing Northern Shoveler habitat.

[Responses of soil nematode communities to long-term application of inorganic fertilizers in upland red soil].

PubMed

Zhang, Wei; Liu, Man-Qiang; He, Yuan-Qiu; Fan, Jian-Bo; Chen, Yan

2014-08-01

Soil biota plays a key role in ecosystem functioning of red soil. Based on the long-term inorganic fertilization field experiment (25-year) in an upland red soil, the impacts of different inorganic fertilization managements, including NPK (nitrogen, phosphorus and potassium fertilizers), NPKCaS (NPK plus gypsum fertilizers), NP (nitrogen and phosphorus fertilizers), NK (nitrogen and potassium fertilizers) and PK (phosphorus and potassium fertilizers), on the assemblage of soil nematodes during the growing period of peanut were investigated. Significant differences among the treatments were observed for total nematode abundance, trophic groups and ecological indices (P < 0.01). The total nematode abundance decreased in the order of PK > NPKCaS > NPK > NP > NK. The total number of nematodes was significantly higher in NPKCaS and PK than in NPK, NP and NK except in May. Plant parasitic nematodes were the dominant trophic group in all treatments excepted in NPKCaS, and their proportion ranged between 38% and 65%. The dominant trophic group in NPKCaS was bacterivores and represented 42.1%. Furthermore, the higher values of maturity index, Wasilewska index and structure index in NPKCaS indicated that the combined application of NPK and gypsum could remarkably relieve soil acidification, resulting in a more mature and stable soil food web structure. While, that of the NK had the opposite effect. In conclusion, our study suggested that the application of both gypsum and phosphate is an effective practice to improve soil quality. Moreover, the analysis of nematode assemblage is relevant to reflect the impact of different inorganic fertilizer on the red soil ecosystem.

Histoplasmosis Risk and Prevention

MedlinePlus

... Histoplasmosis is often associated with activities that disturb soil, particularly soil that contains bird or bat droppings. Certain groups ... The fungus that causes histoplasmosis grows well in soil that contains bird droppings, but birds don’t ...

Effects of combined application of nitrogen fertilizer and biochar on the nitrification and ammonia oxidizers in an intensive vegetable soil.

PubMed

Bi, Qing-Fang; Chen, Qiu-Hui; Yang, Xiao-Ru; Li, Hu; Zheng, Bang-Xiao; Zhou, Wei-Wei; Liu, Xiao-Xia; Dai, Pei-Bin; Li, Ke-Jie; Lin, Xian-Yong

2017-11-07

Soil amended with single biochar or nitrogen (N) fertilizer has frequently been reported to alter soil nitrification process due to its impact on soil properties. However, little is known about the dynamic response of nitrification and ammonia-oxidizers to the combined application of biochar and N fertilizer in intensive vegetable soil. In this study, an incubation experiment was designed to evaluate the effects of biochar and N fertilizer application on soil nitrification, abundance and community shifts of ammonia-oxidizing bacteria (AOB) and ammonia oxidizing archaea (AOA) in Hangzhou greenhouse vegetable soil. Results showed that single application of biochar had no significant effect on soil net nitrification rates and ammonia-oxidizers. Conversely, the application of only N fertilizer and N fertilizer + biochar significantly increased net nitrification rate and the abundance of AOB rather than AOA, and only AOB abundance was significantly correlated with soil net nitrification rate. Moreover, the combined application of N fertilizer and biochar had greater effect on AOB communities than that of the only N fertilizers, and the relative abundance of 156 bp T-RF (Nitrosospira cluster 3c) decreased but 60 bp T-RF (Nitrosospira cluster 3a and cluster 0) increased to become a single predominant group. Phylogenetic analysis indicated that all the AOB sequences were grouped into Nitrosospira cluster, and most of AOA sequences were clustered within group 1.1b. We concluded that soil nitrification was stimulated by the combined application of N fertilizer and biochar via enhancing the abundance and shifting the community composition of AOB rather than AOA in intensive vegetable soil.

Spatial Variability of Grapevine Bud Burst Percentage and Its Association with Soil Properties at Field Scale

PubMed Central

Li, Tao; Hao, Xinmei; Kang, Shaozhong

2016-01-01

There is a growing interest in precision viticulture with the development of global positioning system and geographical information system technologies. Limited information is available on spatial variation of bud behavior and its possible association with soil properties. The objective of this study was to investigate spatial variability of bud burst percentage and its association with soil properties based on 2-year experiments at a vineyard of arid northwest China. Geostatistical approach was used to describe the spatial variation in bud burst percentage within the vineyard. Partial least square regressions (PLSRs) of bud burst percentage with soil properties were used to evaluate the contribution of soil properties to overall spatial variability in bud burst percentage for the high, medium and low bud burst percentage groups. Within the vineyard, the coefficient of variation (CV) of bud burst percentage was 20% and 15% for 2012 and 2013 respectively. Bud burst percentage within the vineyard showed moderate spatial variability, and the overall spatial pattern of bud burst percentage was similar between the two years. Soil properties alone explained 31% and 37% of the total spatial variation respectively for the low group of 2012 and 2013, and 16% and 24% for the high group of 2012 and 2013 respectively. For the low group, the fraction of variations explained by soil properties was found similar between the two years, while there was substantial difference for the high group. The findings are expected to lay a good foundation for developing remedy measures in the areas with low bud burst percentage, thus in turn improving the overall grape yield and quality. PMID:27798692

Tree diversity and species identity effects on soil fungi, protists and animals are context dependent

PubMed Central

Tedersoo, Leho; Bahram, Mohammad; Cajthaml, Tomáš; Põlme, Sergei; Hiiesalu, Indrek; Anslan, Sten; Harend, Helery; Buegger, Franz; Pritsch, Karin; Koricheva, Julia; Abarenkov, Kessy

2016-01-01

Plant species richness and the presence of certain influential species (sampling effect) drive the stability and functionality of ecosystems as well as primary production and biomass of consumers. However, little is known about these floristic effects on richness and community composition of soil biota in forest habitats owing to methodological constraints. We developed a DNA metabarcoding approach to identify the major eukaryote groups directly from soil with roughly species-level resolution. Using this method, we examined the effects of tree diversity and individual tree species on soil microbial biomass and taxonomic richness of soil biota in two experimental study systems in Finland and Estonia and accounted for edaphic variables and spatial autocorrelation. Our analyses revealed that the effects of tree diversity and individual species on soil biota are largely context dependent. Multiple regression and structural equation modelling suggested that biomass, soil pH, nutrients and tree species directly affect richness of different taxonomic groups. The community composition of most soil organisms was strongly correlated due to similar response to environmental predictors rather than causal relationships. On a local scale, soil resources and tree species have stronger effect on diversity of soil biota than tree species richness per se. PMID:26172210

Tree diversity and species identity effects on soil fungi, protists and animals are context dependent.

PubMed

Tedersoo, Leho; Bahram, Mohammad; Cajthaml, Tomáš; Põlme, Sergei; Hiiesalu, Indrek; Anslan, Sten; Harend, Helery; Buegger, Franz; Pritsch, Karin; Koricheva, Julia; Abarenkov, Kessy

2016-02-01

Plant species richness and the presence of certain influential species (sampling effect) drive the stability and functionality of ecosystems as well as primary production and biomass of consumers. However, little is known about these floristic effects on richness and community composition of soil biota in forest habitats owing to methodological constraints. We developed a DNA metabarcoding approach to identify the major eukaryote groups directly from soil with roughly species-level resolution. Using this method, we examined the effects of tree diversity and individual tree species on soil microbial biomass and taxonomic richness of soil biota in two experimental study systems in Finland and Estonia and accounted for edaphic variables and spatial autocorrelation. Our analyses revealed that the effects of tree diversity and individual species on soil biota are largely context dependent. Multiple regression and structural equation modelling suggested that biomass, soil pH, nutrients and tree species directly affect richness of different taxonomic groups. The community composition of most soil organisms was strongly correlated due to similar response to environmental predictors rather than causal relationships. On a local scale, soil resources and tree species have stronger effect on diversity of soil biota than tree species richness per se.

The Soil Stack: An Interactive Computer Program Describing Basic Soil Science and Soil Degradation.

ERIC Educational Resources Information Center

Cattle, S. R.; And Others

1995-01-01

A computer program dealing with numerous aspects of soil degradation has a target audience of high school and university students (16-20 year olds), and is presented in a series of cards grouped together as stacks. Describes use of the software in Australia. (LZ)

Influence of selected physicochemical parameters on microbiological activity of mucks.

NASA Astrophysics Data System (ADS)

Całka, A.; Sokołowska, Z.; Warchulska, P.; Dąbek-Szreniawska, M.

2009-04-01

One of the basic factor decided about soil fertility are microorganisms that together with flora, determine trend and character of biochemical processes as well totality of fundamental transformations connected with biogeochemistry and physicochemical properties of soil. Determination of general bacteria number, quantity of selected groups of microorganisms and investigation of respiration intensity let estimate microbiological activity of soil. Intensity of microbiological processes is directly connected with physicochemical soil parameters. In that case, such structural parameters as bulk density, porosity, surface or carbon content play significant role. Microbiological activity also changes within the bounds of mucks with different stage of humification and secondary transformation. Knowledge of relations between structural properties, microorganism activity and degree of transformation and humification can lead to better understanding microbiological processes as well enable to estimate microbiological activity at given physicochemical conditions and at progressing process of soil transformation. The study was carried out on two peaty-moorsh (muck) soils at different state of secondary transformation and humification degree. Soil samples were collected from Polesie Lubelskie (layer depth: 5 - 25 cm). Investigated mucks originated from soils formed from low peatbogs. Soil sample marked as I belonged to muck group weakly secondary transformed. Second sample (II) represented soil group with middle stage of secondary transformation. The main purpose of the research was to examine the relations between some physicochemical and surface properties and their biological activity. Total number and respiration activity of microorganisms were determined. The effectiveness of utilizing the carbon substances from the soil by the bacteria increased simultaneously with the transformation state of the peat-muck soils. Quantity of organic carbon decreased distinctly in the soil at the higher stage of secondary transformation and it influenced quantity and activity of soil microorganisms. Bulk density and surface increased with increasing secondary transformation degree. On the other hand, porosity decreased with increasing secondary transformation index. Process of secondary transformation influenced the soil environment for the microbes by changing the physicochemical properties. This way it influenced the number of microorganisms and caused changes of biological activity in the soils.

Analysis of Bacterial Community Structure in Sulfurous-Oil-Containing Soils and Detection of Species Carrying Dibenzothiophene Desulfurization (dsz) Genes

PubMed Central

Duarte, Gabriela Frois; Rosado, Alexandre Soares; Seldin, Lucy; de Araujo, Welington; van Elsas, Jan Dirk

2001-01-01

The selective effects of sulfur-containing hydrocarbons, with respect to changes in bacterial community structure and selection of desulfurizing organisms and genes, were studied in soil. Samples taken from a polluted field soil (A) along a concentration gradient of sulfurous oil and from soil microcosms treated with dibenzothiophene (DBT)-containing petroleum (FSL soil) were analyzed. Analyses included plate counts of total bacteria and of DBT utilizers, molecular community profiling via soil DNA-based PCR-denaturing gradient gel electrophoresis (PCR-DGGE), and detection of genes that encode enzymes involved in the desulfurization of hydrocarbons, i.e., dszA, dszB, and dszC.Data obtained from the A soil showed no discriminating effects of oil levels on the culturable bacterial numbers on either medium used. Generally, counts of DBT degraders were 10- to 100-fold lower than the total culturable counts. However, PCR-DGGE showed that the numbers of bands detected in the molecular community profiles decreased with increasing oil content of the soil. Analysis of the sequences of three prominent bands of the profiles generated with the highly polluted soil samples suggested that the underlying organisms were related to Actinomyces sp., Arthrobacter sp., and a bacterium of uncertain affiliation. dszA, dszB, and dszC genes were present in all A soil samples, whereas a range of unpolluted soils gave negative results in this analysis. Results from the study of FSL soil revealed minor effects of the petroleum-DBT treatment on culturable bacterial numbers and clear effects on the DBT-utilizing communities. The molecular community profiles were largely stable over time in the untreated soil, whereas they showed a progressive change over time following treatment with DBT-containing petroleum. Direct PCR assessment revealed the presence of dszB-related signals in the untreated FSL soil and the apparent selection of dszA- and dszC-related sequences by the petroleum-DBT treatment. PCR-DGGE applied to sequential enrichment cultures in DBT-containing sulfur-free basal salts medium prepared from the A and treated FSL soils revealed the selection of up to 10 distinct bands. Sequencing a subset of these bands provided evidence for the presence of organisms related to Pseudomonas putida, a Pseudomonas sp., Stenotrophomonas maltophilia, and Rhodococcus erythropolis. Several of 52 colonies obtained from the A and FSL soils on agar plates with DBT as the sole sulfur source produced bands that matched the migration of bands selected in the enrichment cultures. Evidence for the presence of dszB in 12 strains was obtained, whereas dszA and dszC genes were found in only 7 and 6 strains, respectively. Most of the strains carrying dszA or dszC were classified as R. erythropolis related, and all revealed the capacity to desulfurize DBT. A comparison of 37 dszA sequences, obtained via PCR from the A and FSL soils, from enrichments of these soils, and from isolates, revealed the great similarity of all sequences to the canonical (R. erythropolis strain IGTS8) dszA sequence and a large degree of internal conservation. The 37 sequences recovered were grouped in three clusters. One group, consisting of 30 sequences, was minimally 98% related to the IGTS8 sequence, a second group of 2 sequences was slightly different, and a third group of 5 sequences was 95% similar. The first two groups contained sequences obtained from both soil types and enrichment cultures (including isolates), but the last consisted of sequences obtained directly from the polluted A soil. PMID:11229891

Testing association between soil bacterial diversity and soil carbon storage on the Loess Plateau.

PubMed

Yang, Yang; Dou, Yanxing; An, Shaoshan

2018-06-01

Bacteria are widely distributed and play an important role in soil carbon (C) cycling. The impact of soil bacterial diversity on soil C storage has been well established, yet little is known about the underlying mechanisms and the interactions among them. Here, we examined the association between soil bacterial diversity and soil C storage in relation to vegetation restoration on the Loess Plateau. The dominant phyla among land use types (artificial forest, Af; natural shrubland, Ns; artificial grassland, Ag; natural grassland, Ng; slope cropland, Sc) were Acidobacteria, Actinobacteria, Alphaproteobacteria, and Betaproteobacteria, which transited from Acidobacteria-dominant to Actinobacteria-dominant community due to vegetation restoration. Soil C storage and the Shannon diversity index of soil bacterial community (H Bacteria ) showed the order Ns > Ng > Af > Ag > Sc, whereas no significant difference was found in Good's coverage (p > .05). Further, a strong relationship was observed between the relative abundance of dominant bacterial groups and soil C storage (p < .05). Additionally, soil bacterial diversity was closely related to soil C storage based on the structural equation model (SEM) and generalized additive models (GAMs). Specifically, soil C storage had the largest deterministic effects, explaining >70% of the variation and suggesting a strong association between soil C storage and soil bacterial diversity. Overall, we propose that further studies are necessary with a focus on the soil bacterial groups with specific functions in relation to soil C storage on the Loess Plateau. Copyright © 2018 Elsevier B.V. All rights reserved.

Physical-chemical and microbiological changes in Cerrado Soil under differing sugarcane harvest management systems

PubMed Central

2012-01-01

Background Sugarcane cultivation plays an important role in Brazilian economy, and it is expanding fast, mainly due to the increasing demand for ethanol production. In order to understand the impact of sugarcane cultivation and management, we studied sugarcane under different management regimes (pre-harvest burn and mechanical, unburnt harvest, or green cane), next to a control treatment with native vegetation. The soil bacterial community structure (including an evaluation of the diversity of the ammonia oxidizing (amoA) and denitrifying (nirK) genes), greenhouse gas flow and several soil physicochemical properties were evaluated. Results Our results indicate that sugarcane cultivation in this region resulted in changes in several soil properties. Moreover, such changes are reflected in the soil microbiota. No significant influence of soil management on greenhouse gas fluxes was found. However, we did find a relationship between the biological changes and the dynamics of soil nutrients. In particular, the burnt cane and green cane treatments had distinct modifications. There were significant differences in the structure of the total bacterial, the ammonia oxidizing and the denitrifying bacterial communities, being that these groups responded differently to the changes in the soil. A combination of physical and chemical factors was correlated to the changes in the structures of the total bacterial communities of the soil. The changes in the structures of the functional groups follow a different pattern than the physicochemical variables. The latter might indicate a strong influence of interactions among different bacterial groups in the N cycle, emphasizing the importance of biological factors in the structuring of these communities. Conclusion Sugarcane land use significantly impacted the structure of total selected soil bacterial communities and ammonia oxidizing and denitrifier gene diversities in a Cerrado field site in Central Brazil. A high impact of land use was observed in soil under the common burnt cane management. The green cane soil also presented different profiles compared to the control soil, but to at a lesser degree. PMID:22873209

The Soil Spectroscopy Group and the development of a global soil spectral library

NASA Astrophysics Data System (ADS)

Rossel, R. Viscarra Rossel; Soil Spectroscopy Group

2009-04-01

This collaboration aims to develop a global soil spectral library and to establish a community of practice for soil spectroscopy. This will help progress soil spectroscopy from an almost purely research tool to a more widely adopted and useful technique for soil analysis, proximal soil sensing, soil monitoring and digital soil mapping. The initiative started in April 2008 with a proposal for the project to be conducted in a number of stages to investigate the following topics: Global soil diversity and variation can be characterised using diffuse reflectance spectra. Soil spectral calibrations can be used to predict soil properties globally. Soil spectroscopy can be a useful tool for digital soil mapping. Currently, the soil spectral library is being developed using legacy soil organic carbon (OC) and clay content data and vis-NIR (350-2500 nm) spectra, but in future we aim to include other soil properties and mid-IR (2500-25000 nm) spectra. The group already has more than 40 collaborators from six continents and 20 countries and the library consists of 5223 spectra from 43 countries. The library accounts for spectra from approximately only 22% of the world's countries, some of which are poorly represented with only very few spectra. We would like to encourage participation from as many countries as possible, particularly, we would like contributions from counties in Central and South America, Mexico, Canada, Russia and countries in Eastern Europe, Africa and Asia. We are missing a lot of countries and for some, e.g. China we have only very few data! Do you want to join the group and contribute spectra to the global library? The requirements for contributing spectra to the global library are as follows: Spectra collected in the 350-2500 nm range every 1 nm. At least soil OC and clay content data but also any other soil chemical, physical, biological and mineralogical data, noting which analytical techniques were used. Coordinates (in WGS84 format) for each sample. Soil classification for each sample, preferably using FAO-WRB (FAO, 1998). Future access to soil samples for mid-IR scanning. If you do not have all of the requested metadata for every sample, but would like to contribute to the library, please let us know. Also, if you do not have access to a spectrometer but have a good set of soils that you would like to contribute to the library, we can arrange to have the soils scanned at CSIRO in Australia or in a collaborating institution nearer to you. We have done this with a number of countries already. There are leading collaborators in each continent: Bo Stenberg in Europe, David Brown in USA, Alexandre Dematte in South America, Keith Shepherd in Africa, Eyal Ben-Dor in the Middle East and Asia and Raphael Viscarra Rossel in Oceania and Asia. To make this work we need participation from as many people around the world as possible. If you are interested in contributing spectra to the global library please send me an email (raphael.viscarra-rossel@csiro.au) and join the group!

Communities of microorganisms and invertebrates in soil-like bodies of soccer fields in Moscow oblast

NASA Astrophysics Data System (ADS)

Kutovaya, O. V.; Zamotaev, I. V.; Belobrov, V. P.

2014-11-01

Artificially created soil-like technogenic formations (STFs) of soccer fields are developed under combined action of intense technogenic and natural factors and processes, which cannot but affect the structure and biological activity of their microbial communities and mesofauna. The microflora of the STFs is very similar to the microflora of the background soddy-podzolic soils of Moscow oblast with respect to the composition of the physiological groups of microorganisms. However, they are drastically different in their quantitative characteristics. The numbers of all the trophic groups of microorganisms, except for the microscopic fungi, in the STFs are much higher than those in the zonal soils. An increased biological activity of the STFs is due to regular watering, heating, application of sand and mineral fertilizers, and technogenic turbation processes. The mesofauna of the STFs is represented by several ecological groups of earthworms, including soildwelling (endogeic) earthworms ( Aporrectodea caliginosa), epigeic earthworms dwelling at the soil-litter interface ( Lumbricus rubellus), and litter-dwelling earthworms ( Eisenia foetida).

Detection of soil erosion with Thematic Mapper (TM) satellite data within Pinyon-Juniper woodlands

NASA Technical Reports Server (NTRS)

Price, Kevin Paul

1987-01-01

Pinyon-Juniper woodlands dominate approximately 24.3 million hectares (60 million acres) in the western United States. The overall objective was to test the sensitivity of the LANDSAT Thematic Mapper (TM) spectral data for detecting varying degrees of soil erosion within the Pinyon-Juniper woodlands. A second objective was to assess the potential of the spectral data for assigning the Universal Soil Loss Equation (USLE) crop management (C) factor values to varying cover types within the woodland. Thematic Mapper digital data for June 2, 1984 on channels 2, 3, 4, and 5 were used. Digital data analysis was performed using the ELAS software package. Best results were achieved using CLUS, an unsupervised clustering algorithm. Fifteen of the 40 Pinyon-Juniper signatures were identified as being relatively pure Pinyon-Juniper woodland. Final analysis resulted in the grouping of the 15 signatures into three major groups. Ten study sites were selected from each of the three groups and located on the ground. At each site the following field measurements were taken: percent tree canopy and percent understory cover, soil texture, total soil loss, and soil erosion rate estimates. A technique for measuring soil erosion within Pinyon-Juniper woodlands was developed. A theoretical model of site degradation after Pinyon-Juniper invasion is presented.

Distinct Soil Microbial Communities in habitats of differing soil water balance on the Tibetan Plateau

PubMed Central

Li, Yuntao; Adams, Jonathan; Shi, Yu; Wang, Hao; He, Jin-Sheng; Chu, Haiyan

2017-01-01

Global change may be a severe threat to natural and agricultural systems, partly through its effects in altering soil biota and processes, due to changes in water balance. We studied the potential influence of changing soil water balance on soil biota by comparing existing sites along a natural water balance gradient in the Qinghai-Tibetan Plateau. In this study, the community structure of bacteria, archaea and eukaryotes differed between the different soil water conditions. Soil moisture was the strongest predictor of bacterial and eukaryotic community structure, whereas C/N ratio was the key factor predicting variation in the archaeal community. Bacterial and eukaryotic diversity was quite stable among different soil water availability, but archaeal diversity was dramatically different between the habitats. The auxotype of methanogens also varied significantly among different habitats. The co-varying soil properties among habitats shaped the community structure of soil microbes, with archaea being particularly sensitive in terms of community composition, diversity and functional groups. Bacterial and archaeal phylogenetic community turnover was mainly driven by deterministic processes while stochastic processes had stronger effects on eukaryotic phylogenetic community turnover. Our work provides insight into microbial community, functional group and phylogenetic turnover under different soil conditions in low-latitude alpine ecosystem. PMID:28401921

Distinct Soil Microbial Communities in habitats of differing soil water balance on the Tibetan Plateau

NASA Astrophysics Data System (ADS)

Li, Yuntao; Adams, Jonathan; Shi, Yu; Wang, Hao; He, Jin-Sheng; Chu, Haiyan

2017-04-01

Global change may be a severe threat to natural and agricultural systems, partly through its effects in altering soil biota and processes, due to changes in water balance. We studied the potential influence of changing soil water balance on soil biota by comparing existing sites along a natural water balance gradient in the Qinghai-Tibetan Plateau. In this study, the community structure of bacteria, archaea and eukaryotes differed between the different soil water conditions. Soil moisture was the strongest predictor of bacterial and eukaryotic community structure, whereas C/N ratio was the key factor predicting variation in the archaeal community. Bacterial and eukaryotic diversity was quite stable among different soil water availability, but archaeal diversity was dramatically different between the habitats. The auxotype of methanogens also varied significantly among different habitats. The co-varying soil properties among habitats shaped the community structure of soil microbes, with archaea being particularly sensitive in terms of community composition, diversity and functional groups. Bacterial and archaeal phylogenetic community turnover was mainly driven by deterministic processes while stochastic processes had stronger effects on eukaryotic phylogenetic community turnover. Our work provides insight into microbial community, functional group and phylogenetic turnover under different soil conditions in low-latitude alpine ecosystem.

Towards a methodology for removing and reconstructing soil protists with intact soil microbial communities

NASA Astrophysics Data System (ADS)

Hu, Junwei; Tsegaye Gebremikael, Mesfin; Salehi Hosseini, Pezhman; De Neve, Stefaan

2017-04-01

Soil ecological theories on the role of soil fauna groups in soil functions are often tested in highly artificial conditions, i.e. on completely sterilized soils or pure quartz sand re-inoculated with a small selection of these fauna groups. Due to the variable sensitivity of different soil biota groups to gamma irradiation, the precise doses that can be administered, and the relatively small disturbance of soil physical and chemical properties (relative to e.g. autoclaving, freezing-thawing and chemical agents), gamma irradiation has been employed to selectively eliminate soil organisms. In recent research we managed to realistically estimate on the contribution of the entire nematode communities to C and N mineralization in soil, by selective removal of nematodes at 5 kGy gamma irradiation doses followed by reinoculation. However, we did not assess the population dynamics of protozoa in response to this irradiation, i.e. we could not assess the potential contribution of protists to the mineralization process. Selective removal of protists from soils with minimal disturbance of the soil microflora has never been attempted and constitutes a highly challenging but potentially groundbreaking technique in soil ecology. Accordingly, the objective of this research is to modify the successful methodology of selective elimination of nematodes, to selectively eliminate soil fauna including nematodes and protists with minimal effects on the soil microbial community and reconstruct soil protists and microbial communities in completely sterilized soil. To this end, we here compared two different approaches: 1) remove nematodes and protists while keeping the microbial community intact (through optimizing gamma irradiation doses); 2) reconstruct protists and microbial communities in sterilized soil (through adding multicellular fauna free pulverized soil). The experiment consists of 7 treatments with soil collected from 0 to 15 cm layer of an organically managed agricultural field: 1) non-irradiated (control); 2-6) irradiated with doses of 5, 7.5, 10, 12.5 and 15 kGy; 7) irradiated with 25 kGy followed by inoculation with multicellular fauna free soil powder. All treatments were incubated using Magenta™ vessels GA-7 which allow air exchange but exclude microbial infection, and we monitor nematode and protist populations after 0, 2, 4 and 8 weeks of incubation by destructive sampling. We also measure the degree of disturbance to the microbial community composition in all treatments as compared to the control soil at the end of incubation. The experiment is ongoing and the data will be presented at the conference.

Temporal variation in earthworm abundance and diversity along hedgerow-to-field transects in contrasting agricultural land uses

NASA Astrophysics Data System (ADS)

Prendergast-Miller, Miranda T.; Jones, David; Hodson, Mark E.

2017-04-01

Earthworms are regarded as ecosystem engineers, integral to soil processes such as aggregation, nutrient cycling, water infiltration, plant growth and microbial function. Earthworm surveys were conducted for one year on hedge-to-field transects in arable and pasture fields (Yorkshire, UK). The transects incorporated hedgerow and field margin habitats and extended 60 m into the arable or pasture field. At defined distances, earthworm abundance and biomass were recorded, and earthworms were identified to species and ecological group. Soil density, moisture and temperature were also measured. Additional transects were surveyed on experimental plots with arable-to-ley conversions in the arable fields (wheat crop to grass-clover ley), and tilled plots in the pasture fields (grass-clover ley to wheat crop). The conversion plots were established to determine the benefit of grass-clover leys on soil function; and the tilled pasture plots were established to compare the impact of conventional or minimum tillage practices on earthworm abundance and diversity. A baseline survey was conducted before establishment of the experimental ley and tillage plots. The results showed differences in earthworm abundance, with greater earthworm numbers in the pasture soils compared to arable soils. In both soils, abundance of ecological group was endogeic > epigeic > anecic, and each group was dominated by the same species: Allolobophora chlorotica, Lumbricus castaneus and Apporectodea longa. After one year of treatment, there was some indication of increased earthworm abundance in the arable-to-ley conversion strips. Conversely, tillage in the pasture plots tended to reduce earthworm abundance, and conventional tillage tended to have the greater impact. However, within these major changes, there was also evidence of spatial (distance along transect; field location) and temporal (seasonal) variation on earthworm abundance. Although conversion to ley or tillage did not alter the pattern of ecological grouping, there were changes in species diversity which will also be discussed. This earthworm study is part of a larger project which aims to (1) link soil biodiversity (microbes, soil fauna) with soil function (productivity, water infiltration, drought resilience), and (2) demonstrate the benefits of grass-clover leys and minimum tillage in boosting soil biodiversity, soil function, and hence, sustainable agricultural productivity.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johar, Saffuwan Mohamed, E-mail: saffuwan@uthm.edu.my; Embong, Zaidi; Research Center for Soft Soil

An assessment of absorbed dose and radiation hazard index as well as its relationship with soil pH was performed in this study. The area was chosen due to its variety of soil types from the Alluvial and the Sedentary group. The radioactivity concentration levels and the soil acidity were measured using the Canberra GC3518 high pure germanium with a relative efficiency of 35% at 1.3 MeV and the Takemura Soil pH and Moisture Tester (DM15), respectively. Overall results show the Holyrood-Lunas soil of Alluvial group recorded the highest external terrestrial gamma radiation dose rate (TGRD) of 286.4±37.9 nGy h{sup −1} andmore » radioactivity concentrations of 78.1±8.9 Bq kg{sup −1} ({sup 226}Ra), 410.5±55.4 Bq kg{sup −1} ({sup 232}Th) and 56.4±8.8 Bq kg{sup −1} ({sup 40}K), respectively, while the Peat soil of Alluvial group recorded the lowest TGRD of 4.4±2.7 nGy h{sup −1} and radioactivity concentrations of 4.8±1.7 Bq kg{sup −1} ({sup 226}Ra), 3.1±1.1 Bq kg{sup −1} ({sup 232}Th) and 6.1±2.0 Bq kg{sup −1} ({sup 40}K), respectively. The estimated mean outdoor annual effective dose, the mean radium equivalent activity (R{sub eq}) and the mean external (H{sub ext}) and internal hazard index (H{sub int}) associated with the alluvial and sedentary soil group were evaluated at 0.15 and 0.20 mSv, 280 and 364 Bq kg{sup −1}, H{sub ext} = 0.78 and 1.01, and H{sub int} = 0.93 and 1.26, respectively. Correlation analysis between 238U, {sup 232}Th and {sup 40}K with soil pH level for alluvial group was r = +0.68, +0.48 and 0, respectively, while for sedentary soil, the Pearson’s, r = −0.30, −0.90 and +0.14, respectively.« less

Genome Data Mining and Soil Survey for the Novel Group 5 [NiFe]-Hydrogenase To Explore the Diversity and Ecological Importance of Presumptive High-Affinity H2-Oxidizing Bacteria ▿†

PubMed Central

Constant, Philippe; Chowdhury, Soumitra Paul; Hesse, Laura; Pratscher, Jennifer; Conrad, Ralf

2011-01-01

Streptomyces soil isolates exhibiting the unique ability to oxidize atmospheric H2 possess genes specifying a putative high-affinity [NiFe]-hydrogenase. This study was undertaken to explore the taxonomic diversity and the ecological importance of this novel functional group. We propose to designate the genes encoding the small and large subunits of the putative high-affinity hydrogenase hhyS and hhyL, respectively. Genome data mining revealed that the hhyL gene is unevenly distributed in the phyla Actinobacteria, Proteobacteria, Chloroflexi, and Acidobacteria. The hhyL gene sequences comprised a phylogenetically distinct group, namely, the group 5 [NiFe]-hydrogenase genes. The presumptive high-affinity H2-oxidizing bacteria constituting group 5 were shown to possess a hydrogenase gene cluster, including the genes encoding auxiliary and structural components of the enzyme and four additional open reading frames (ORFs) of unknown function. A soil survey confirmed that both high-affinity H2 oxidation activity and the hhyL gene are ubiquitous. A quantitative PCR assay revealed that soil contained 106 to 108 hhyL gene copies g (dry weight)−1. Assuming one hhyL gene copy per genome, the abundance of presumptive high-affinity H2-oxidizing bacteria was higher than the maximal population size for which maintenance energy requirements would be fully supplied through the H2 oxidation activity measured in soil. Our data indicate that the abundance of the hhyL gene should not be taken as a reliable proxy for the uptake of atmospheric H2 by soil, because high-affinity H2 oxidation is a facultatively mixotrophic metabolism, and microorganisms harboring a nonfunctional group 5 [NiFe]-hydrogenase may occur. PMID:21742924

Comparative toxic responses of male and female lizards (Eremias argus) exposed to (S)-metolachlor-contaminated soil.

PubMed

Chen, Li; Wang, Dezhen; Tian, Zhongnan; Di, Shanshan; Zhang, Wenjun; Wang, Fang; Zhou, Zhiqiang; Diao, Jinling

2017-08-01

Soil contamination caused by the widespread use of pesticides is one of the main environmental problems facing conservation organizations. (S)-metolachlor (SM) is a selective pre-emergent herbicide that poses potential risks to soil-related organisms such as reptiles. The present study elucidated the toxic effects of SM (3 and 30 mg/kg soil weight) in Eremias argus. The results showed that growth pattern was similar between the sexes in breeding season. For males, both kidney coefficient (KC) and testis coefficient in the exposure group were significantly different from those in the control group, while only KC in the high-dose group was significantly higher for females. Based on histopathological analysis, the livers of female lizards were more vulnerable than those of males in the exposure group. A reduction in total egg output was observed in SM exposed lizards. Accumulation studies indicated that skin exposure may be an important route for SM uptake in E. argus, and that the liver and lung have strong detoxification abilities. In addition, the body burdens of the lizards increased with increasing SM concentration in the soil. Copyright © 2017 Elsevier Ltd. All rights reserved.

Biodiversity effects on the water balance of an experimental grassland

NASA Astrophysics Data System (ADS)

Leimer, Sophia; Kreutziger, Yvonne; Rosenkranz, Stephan; Beßler, Holger; Engels, Christof; Oelmann, Yvonne; Weisser, Wolfgang W.; Wirth, Christian; Wilcke, Wolfgang

2013-04-01

Plant species richness increases aboveground biomass production in biodiversity experiments. Biomass production depends on and feeds back to the water balance, but it remains unclear how plant species richness influences soil water contents and water fluxes (actual evapotranspiration (ETa), downward flux (DF), and upward flux (UF)). Our objective was to determine the effects of plant species and functional richness and functional identity on soil water contents and water fluxes for two soil depths (0-0.3 and 0.3.-0.7 m). To achieve this, we used a water balance model in connection with Bayesian hierarchical modeling. We monitored soil water contents on 86 plots of a grassland plant diversity experiment in Jena, Germany between July 2002 and January 2006. In the field experiment, plant species richness (0, 1, 2, 4, 8, 16, 60) and functional group composition (0-4 functional groups: legumes, grasses, non-leguminous tall herbs, non-leguminous small herbs) were manipulated in a factorial design. Climate data (air temperature, precipitation, wind velocity, relative humidity, global radiation, soil moisture) was measured at a central climate station between July 2002 and December 2007. Root biomass data from July 2006 was available per plot. Missing water contents per plot and depth were estimated in weekly resolution for the years 2003-2007 with a Bayesian hierarchical model using measured water contents per plot and centrally measured soil moisture. To obtain ETa, DF, and UF of the two different soil depths, we modified a soil water balance model which had been developed for our study site. The model is based on changes in soil water content between subsequent observation dates and modeled potential evapotranspiration which was partitioned between soil layers according to percentage of root biomass. The presence of specific functional groups significantly changed water contents and fluxes with partly opposing effects in the two soil depths. Presence of grasses decreased water contents in both depths, DF in topsoil, and ETa in subsoil, but increased ETa in topsoil. As grasses produce less shade than other plant functional groups because of their leaf morphology, higher ETa in topsoil could be explained by higher soil evaporation. Moreover, grasses have an extensive, shallow rooting system which facilitates exhaustive water use from the upper soil layer and therefore probably decreases water contents and DF. Species richness did not significantly affect water contents and fluxes in both soil layers except that the relation between species richness and water contents in subsoil changed over time. This can be explained by two equivalent but opposite effects. Transpiration increases with biomass which is positively correlated with species richness. By contrast, soil evaporation decreases with species richness because the greater vegetation cover in species-rich communities produces more shade. We conclude that the contrasting effects of plant species richness on transpiration and evaporation counterbalance each other and that functional traits of specific plant functional groups mediate the biologically-induced changes in the water balance.

Vertical migration of some herbicides through undisturbed and homogenized soil columns

PubMed Central

Aktar, Md. Wasim; Sengupta, Dwaipayan; Purkait, Swarnali; Chowdhury, Ashim

2008-01-01

A laboratory experiment was conducted by using three herbicides, two from dinitroaniline group and one from thiocarbamate group to know their degree of downward movement (leachability) through soil columns and their contribution in ground water contamination. Soil columns were loaded with Pendimethalin, Benthiocarb and Oryzalin at doses of 10.0, 10.0 and 7.7 kg/ha, respectively. After 30 days soil samples were analyzed from each segments (i.e. 0–6, 6–12, 12–18, 18–24 and 24–30 cm) for Benthiocarb and Pendimethalin by GLC equipped with Ni63 electron capture detector (ECD) and for Oryzalin by HPLC coupled with UV-VIS detector. The results obtained in the present study reveal that the residues of the three herbicides under investigation were predominantly confined to the upper soil layer (0–6 cm). Comparatively, low mobility of these herbicides in soils could be due to strong adsorption of these chemical to soil colloids. PMID:21218121

Linking Microbial Community Structure to β-Glucosidic Function in Soil Aggregates

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bailey, Vanessa L.; Fansler, Sarah J.; Stegen, James C.

2013-10-01

To link microbial community 16S structure to a measured function in a natural soil we have scaled both DNA and β-glucosidase assays down to a volume of soil that may approach a unique microbial community. β-glucosidase activity was assayed in 450 individual aggregates which were then sorted into classes of high or low activities, from which groups of 10 or 11 aggregates were identified and grouped for DNA extraction and pyrosequencing. Tandem assays of ATP were conducted for each aggregate in order to normalize these small groups of aggregates for biomass size. In spite of there being no significant differencesmore » in the richness or diversity of the microbial communities associated with high β-glucosidase activities compared with the communities associated with low β-glucosidase communities, several analyses of variance clearly show that the communities of these two groups differ. The separation of these groups is partially driven by the differential abundances of members of the Chitinophagaceae family. It may be that observed functional differences in otherwise similar soil aggregates can be largely attributed to differences in resource availability, rather than to presence or absence of particular taxonomic groups.« less

How People Have Used Soils, How Soils Have Affected U.S. History.

ERIC Educational Resources Information Center

Polak, Julia

1996-01-01

Presents a lesson plan that investigates social aspects of the land and soil and how people use these resources. Following an introduction by the teacher on land and soil use, students answer related questions on handouts. Later handouts direct the students to group research projects and class presentations. (MJP)

[Diversity of soil mesofauna in Northern Taiga biogeocenosises of the Kamennaya river basin (Karelia)].

PubMed

Rybalov, L B; Kamaev, I O

2011-01-01

The population of soil mesofauna in the basin of the small river subzone of the northern taiga (Karelia) has been investigated. It was shown that indexes of the number and mass of soil mesofauna in the landscape-ecological row ofbiogeocenosises are maximal in floodplain soils. The taxonomic composition and structure of domination of the soil mesofauna population depends on the location of biogeocenosis in the landscape: earthworms are dominants in riverine floodplain biogeocenosises, and larvae of elaterids and spiders prevail in the places outside of floodplains. The abundance of saprophytic invertebrates in floodplain biogeocenosises results in formation of humus of the mull type. A group of animals with mixed type of nutrition dominates in the places outside of floodplain soils that are related with humus of the moder-mor type. The population of rove beetles (Staphylinidae) allows the division of biogeocenosises into two groups according to their position in the landscape.

[Effects of different organic matter mulching on water content, temperature, and available nutrients of apple orchard soil in a cold region].

PubMed

Zhou, Jiang-Tao; Lü, De-Guo; Qin, Si-Jun

2014-09-01

The effects of different organic matter covers on soil physical-chemical properties were investigated in a 'Hanfu' apple orchard located in a cold region. Four treatments were applied (weed mulching, rice straw mulching, corn straw mulching, and crushed branches mulching), and physical-chemical properties, including orchard soil moisture and nutrient contents, were compared among treatment groups and between organic matter-treated and untreated plots. The results showed that soil water content increased in the plots treated with organic matter mulching, especially in the arid season. Cover with organic matter mulch slowed the rate of soil temperature increase in spring, which was harmful to the early growth of fruit trees. Organic matter mulching treatments decreased the peak temperature of orchard soil in the summer and increased the minimum soil temperature in the fall. pH was increased in soils treated with organic matter mulching, especially in the corn straw mulching treatment, which occurred as a response to alleviating soil acidification to achieve near-neutral soil conditions. The soil organic matter increased to varying extents among treatment groups, with the highest increase observed in the weed mulching treatment. Overall, mulching increased alkali-hydrolyzable nitrogen, available phosphorus, and available potassium in the soil, but the alkali-hydrolyzable nitrogen content in the rice straw mulching treatment was lower than that of the control.

Ch'ol nomenclature for soil classification in the ejido Oxolotán, Tacotalpa, Tabasco, México.

PubMed

Sánchez-Hernández, Rufo; Méndez-De la Cruz, Lucero; Palma-López, David J; Bautista-Zuñiga, Francisco

2018-05-30

The traditional ecological knowledge of land of the Ch'ol originary people from southeast Mexico forms part of their cultural identity; it is local and holistic and implies an integrated physical and spiritual worldview that contributes to improve their living conditions. We analyzed the nomenclature for soil classification used in the Mexican state of Tabasco by the Ch'ol farmers with the objective of contributing to the knowledge of the Maya soil classification. A map of the study area was generated from the digital database of parcels in the ejido Oxolotán in the municipality of Tacotalpa, to which a geopedological map was overlaid in order to obtain modeled topographic profiles (Zavala-Cruz et al., Ecosistemas y Recursos Agropecuarios 3:161-171, 2016). In each modeled profile, a soil profile was made and classified according to IUSS Working Group WRB (181, 2014) in order to generate a map of soil groups, which was used to survey the study area with the participation of 245 local Ch'ol farmers for establishing an ethnopedological soil classification (Ortiz et al.: 62, 1990). In addition, we organized a participatory workshop with 35 people to know details of the names of the soils and their indicators of fertility and workability, from which we selected 15 participants for field trips and description of soil profiles. The color, texture, and stoniness are attributes important in the Ch'ol nomenclature, although the names do not completely reflect the visible characteristic of the soil surface. On the other hand, the mere presence of stones is sufficient to name a land class, while according to IUSS Working Group WRB (181, 2014), a certain amount and distribution of stones in the soil profiles is necessary to be taken into consideration in the name. Perception of soil quality by local farmers considers the compaction or hardness of the cultivable soil layer, because of which black or sandy soils are perceived as better for cultivation of banana, or as secondary vegetation in fallow. Red, yellow, or brown soils are seen as of less quality and are only used for establishing grasslands, while maize is cultivated in all soil classes. Farmers provided the Ch'ol nomenclature, perceived problems, and uses of each class of soil. Translation of Ch'ol soil names and comparison with descriptions of soil profiles revealed that the Ch'ol soil nomenclature takes into account the soil profile, given it is based on characteristics of both surface and subsurface horizons including color of soil matrix and mottles, stoniness, texture, and vegetation.

Regional stratigraphy and geologic history of Mare Crisium

NASA Technical Reports Server (NTRS)

Head, J. W., III; Adams, J. B.; Mccord, T. B.; Pieters, C.; Zisk, S.

1978-01-01

Remote sensing and Luna 24 sample data are used to develop a summary of the regional stratigraphy and geologic history of Mare Crisium. Laboratory spectra of Luna 24 samples, telescopic reflectance spectra in the 0.3 to 1.1 micron range and orbital X-ray data have identified three major basalt groups in the region. Group I soil is derived from iron- and magnesium-rich titaniferous basalts and was apparently emplaced over the majority of the basin, however is presently exposed as a shelf in the southwest part. Group II soils, derived from very low titanium ferrobasalts, were emplaced in two stages subsequent to Group I emplacement and now appear as part of the outer shelf and topographic annulus. Subsidence of the basin interior preceded and continued after the emplacement of the third basalt group, a soil derived from a low titanium ferrobasalt. The Luna 24 site is found to be within a patch of Group II material.

Framing a future for soil science education.

NASA Astrophysics Data System (ADS)

Field, Damien

2017-04-01

The emerging concept of Global Soil Security highlights the need to have a renewed education framework that addresses the needs of those who want to; 1) know soil, 2) know of soil, and/or 3) be aware of soil. Those who know soil are soil science discipline experts and are concerned with soil as an object of study. With their discipline expertise focusing on what soil's are capable of they would be brokers of soil knowledge to those who know of soil. The connection with soil by the those in the second group focuses on the soil's utility and are responsible for managing the functionality and condition of the soil, the obvious example are farmers and agronomists. Reconnecting society with soil illustrates those who are members of the third group, i.e. those who are aware of soil. This is predicated on concepts of 'care' and is founded in the notion of beauty and utility. The utility is concerned with soil providing good Quality, clean food, or a source of pharmaceuticals. Soil also provides a place for recreation and those aware of soil know who this contributes to human health. The teaching-research-industry-learning (TRIL) nexus has been used to develop a framework for the learning and teaching of soil science applicable to a range of recipients, particularly campus-based students and practicing farm advisors. Consultation with academics, industry and professionals, by means of online (Delphi Study) and face-to-face forums, developed a heavily content-rich core body of knowledge (CBoK) relevant to industry, satisfying those who; know, and know of soil. Integrating the multidisciplinary approach in soil science teaching is a future aspiration, and will enable the development of curriculum that incorporates those who 'care' for soil. In the interim the application of the TRIL model allows the development of a learning framework more suited to real word needs. The development of a learning framework able to meet industry needs includes authentic complex scenarios that will also benefit student learning.

Remediation of lead-contaminated soil with non-toxic biodegradable natural ligands extracted from soybean.

PubMed

Lee, Yong-Woo; Kim, Chulsung

2012-01-01

Bench-scale soil washing studies were performed to evaluate the potential application of non-toxic, biodegradable extracted soybean-complexing ligands for the remediation of lead-contaminated soils. Results showed that, with extracted soybean-complexing ligands, lead solubility extensively increased when pH of the solution was higher than 6, and approximately 10% (500 mg/kg) of lead was removed from a rifle range soil. Two potential primary factors controlling the effectiveness of lead extraction from lead-contaminated soils with natural ligands are adsorption of extracted aqueous lead ions onto the ground soybean and the pH of the extraction solution. More complexing ligands were extracted from the ground soybean as the reaction pH increased. As a result, significantly higher lead extraction efficiency was observed under basic environments. In addition, less adsorption onto soybean was observed when the pH of the solution was higher than 7. Among two available Lewis base functional groups in the extracted soybean-complexing ligands such as carboxylate and the alpha-amino functional groups, the non-protonated alpha-amino functional groups may play an important role for the dissolution of lead from lead-contaminated soil through the formation of soluble lead--ligand complexes.

Phylogenetic diversity of ceftriaxone resistance and the presence of extended-spectrum β-lactamase genes in the culturable soil resistome.

PubMed

Pagaling, Eulyn; Gatica, Joao; Yang, Kun; Cytryn, Eddie; Yan, Tao

2016-09-01

The aim of this study was to determine the phylogenetic diversity of ceftriaxone resistance and the presence of known extended-spectrum β-lactamase (ESBL) genes in culturable soil resistomes. Libraries of soil bacterial isolates resistant to ceftriaxone were established from six physicochemically diverse soils collected in Hawaii (USA) and Israel. The phylogenetic affiliation, ceftriaxone and multidrug resistance levels, and presence of known ESBL genes of the isolates were determined. The soil bacterial isolates were phylogenetically grouped with the Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Actinobacteria, Firmicutes and Bacteroidetes. Ceftriaxone minimum inhibitory concentrations (MICs) largely followed the phylogeny structure and higher levels of ceftriaxone resistance corresponded to higher multidrug resistance. Three distinct blaTEM variants were detected in soil bacterial isolates belonging to nine different genera. In conclusion, the culturable soil resistomes for ceftriaxone exhibited high phylogenetic diversity and multidrug resistance. blaTEM was the only known ESBL detected in the soil resistomes, and its distribution in different phylogenetic groups suggests its ubiquitous presence and/or possible horizontal gene transfer within the soil microbiomes. Copyright © 2016 International Society for Chemotherapy of Infection and Cancer. Published by Elsevier Ltd. All rights reserved.

Near infrared spectra are more sensitive to land use changes than physical, chemical and biological soil properties

NASA Astrophysics Data System (ADS)

Guerrero, C.; Zornoza, R.; Mataix-Solera, J.; Mataix-Beneyto, J.; Scow, K.

2009-04-01

We studied the sensibility of the near infrared spectra (NIR) of soils to the changes caused by land use, and we compared with the sensibility of different sets of physical, chemical and biological soil properties. For this purpose, we selected three land uses, constituted by forest, almond trees orchards, and orchards abandoned between 10 and 15 years previously to sampling. Sampling was carried out in four different locations from the province of Alicante (SE Spain). We used discriminant analysis (DA) using different sets of soil properties. The different sets tested in this study using DA were: (1) physical and chemical properties (organic carbon, total nitrogen, available phosphorus, pH, electrical conductivity, cation exchange capacity, aggregate stability, water holding capacity, and available Ca, Mg, K and Na), (2) biochemical properties (microbial biomass carbon, basal respiration and urease, phosphatase and β-glucosidase activities), (3) phospholipids fatty acids (PLFAs), (4) physical, chemical and biochemical properties (all properties of the previous sets), and (5) the NIR spectra of soils (scores of the principal components). In general, all sets of properties were sensible to land use. This was observed in the DAs by the separation (more or less clear) of samples in groups defined by land use (irrespective of site). The worst results were obtained using soil physical and chemical properties. The combination of physical, chemical and biological properties enhanced the separation of samples in groups, indicating higher sensibility. It is accepted than combination of properties of different nature is more effective to evaluate the soil quality. The microbial community structure (PLFAs) was highly sensible to the land use, grouping correctly the 100% of the samples according with the land use. The NIR spectra were also sensitive to land use. The scores of the first 5 components, which explained 99.97% of the variance, grouped correctly the 85% of the soil samples by land use, but were unable to group correctly the 100% of the samples. Surprisingly, when the scarce variance presents in components 5 to 40 was also used, the 100% of the samples were grouped by land use, as it was observed with PLFAs. But PLFAs analysis is expensive and time-consuming (some weeks). In contrast, only some minutes are needed for the obtainment of the NIR spectra. Additionally, no chemicals are need, decreasing the costs. The NIR spectrum of a soil contains relevant information about physical, chemical and biochemical properties. NIR spectrum could be considered as an integrated vision of soil quality, and as consequence offers an integrated vision of perturbations. Thus, NIR spectroscopy could be used as tool to monitoring soil quality in large areas. Acknowledgements: Authors acknowledge to "Bancaja-UMH" for the financial support of the project "NIRPRO"

Short- and medium-chain chlorinated paraffins in urban soils of Shanghai: spatial distribution, homologue group patterns and ecological risk assessment.

PubMed

Wang, Xue-Tong; Wang, Xi-Kui; Zhang, Yuan; Chen, Lei; Sun, Yan-Feng; Li, Mei; Wu, Ming-Hong

2014-08-15

Chlorinated paraffins (CPs) are toxic, bioaccumulative, persistent, and ubiquitously present in the environment. Data on the presence of short- and medium-chain chlorinated paraffins (SCCPs and MCCPs) in urban areas with dense population are still scarce to date. SCCPs and MCCPs were measured in urban soils from Shanghai to comprehensively investigate their levels, spatial distribution, homologue group patterns and ecological risk. The concentrations of CPs in soils varied from ND to 615 ng g(-1) with a median value of 15.7 ng g(-1) for SCCPs and from 1.95 to 188 ng g(-1) with a median value of 7.98 ng g(-1) for MCCPs, respectively. The concentrations of SCCPs in most soils were higher than those of MCCPs. The total CP concentrations in soil samples were between 4.10 and 625 ng g(-1) with a median value of 26.4 ng g(-1). For different functional zones, the median concentrations of soil CPs were found higher in green land including park, greenbelt and campus than those in roadside. The highest concentrations of CPs in soils could be derived from sewage sludge application and wastewater irrigation for green land. Three types of soils were classified by hierarchical cluster analysis (HCA) for SCCPs and MCCPs, the most abundant homologue groups in the bulk of the soil samples were C11Cl5-7 and C13Cl5-7 for SCCPs, and C14Cl7-8 and C15Cl7-8 for MCCPs. Correlation analysis and PCA suggested that SCCPs and MCCPs in soils in the studied area derived from different sources. The preliminary ecological risk assessment indicates that soil CPs at present levels poses no significant ecological risk for soil-dwelling organisms. Copyright © 2014 Elsevier B.V. All rights reserved.

Soil invertebrate fauna affect N2 O emissions from soil.

PubMed

Kuiper, Imke; de Deyn, Gerlinde B; Thakur, Madhav P; van Groenigen, Jan Willem

2013-09-01

Nitrous oxide (N2 O) emissions from soils contribute significantly to global warming. Mitigation of N2 O emissions is severely hampered by a lack of understanding of its main controls. Fluxes can only partly be predicted from soil abiotic factors and microbial analyses - a possible role for soil fauna has until now largely been overlooked. We studied the effect of six groups of soil invertebrate fauna and tested the hypothesis that all of them increase N2 O emissions, although to different extents. We conducted three microcosm experiments with sandy soil and hay residue. Faunal groups included in our experiments were as follows: fungal-feeding nematodes, mites, springtails, potworms, earthworms and isopods. In experiment I, involving all six faunal groups, N2 O emissions declined with earthworms and potworms from 78.4 (control) to 37.0 (earthworms) or 53.5 (potworms) mg N2 O-N m(-2) . In experiment II, with a higher soil-to-hay ratio and mites, springtails and potworms as faunal treatments, N2 O emissions increased with potworms from 51.9 (control) to 123.5 mg N2 O-N m(-2) . Experiment III studied the effect of potworm density; we found that higher densities of potworms accelerated the peak of the N2 O emissions by 5 days (P < 0.001), but the cumulative N2 O emissions remained unaffected. We propose that increased soil aeration by the soil fauna reduced N2 O emissions in experiment I, whereas in experiment II N2 O emissions were driven by increased nitrogen and carbon availability. In experiment III, higher densities of potworms accelerated nitrogen and carbon availability and N2 O emissions, but did not increase them. Overall, our data show that soil fauna can suppress, increase, delay or accelerate N2 O emissions from soil and should therefore be an integral part of future N2 O studies. © 2013 John Wiley & Sons Ltd.

Phylogenetically Distinct Phylotypes Modulate Nitrification in a Paddy Soil

PubMed Central

Zhao, Jun; Wang, Baozhan

2015-01-01

Paddy fields represent a unique ecosystem in which regular flooding occurs, allowing for rice cultivation. However, the taxonomic identity of the microbial functional guilds that catalyze soil nitrification remains poorly understood. In this study, we provide molecular evidence for distinctly different phylotypes of nitrifying communities in a neutral paddy soil using high-throughput pyrosequencing and DNA-based stable isotope probing (SIP). Following urea addition, the levels of soil nitrate increased significantly, accompanied by an increase in the abundance of the bacterial and archaeal amoA gene in microcosms subjected to SIP (SIP microcosms) during a 56-day incubation period. High-throughput fingerprints of the total 16S rRNA genes in SIP microcosms indicated that nitrification activity positively correlated with the abundance of Nitrosospira-like ammonia-oxidizing bacteria (AOB), soil group 1.1b-like ammonia-oxidizing archaea (AOA), and Nitrospira-like nitrite-oxidizing bacteria (NOB). Pyrosequencing of 13C-labeled DNA further revealed that 13CO2 was assimilated by these functional groups to a much greater extent than by marine group 1.1a-associated AOA and Nitrobacter-like NOB. Phylogenetic analysis demonstrated that active AOB communities were closely affiliated with Nitrosospira sp. strain L115 and the Nitrosospira multiformis lineage and that the 13C-labeled AOA were related to phylogenetically distinct groups, including the moderately thermophilic “Candidatus Nitrososphaera gargensis,” uncultured fosmid 29i4, and acidophilic “Candidatus Nitrosotalea devanaterra” lineages. These results suggest that a wide variety of microorganisms were involved in soil nitrification, implying physiological diversification of soil nitrifying communities that are constantly exposed to environmental fluctuations in paddy fields. PMID:25724959

Insight into the effects of different cropping systems on soil bacterial community and tobacco bacterial wilt rate.

PubMed

Niu, Jiaojiao; Chao, Jin; Xiao, Yunhua; Chen, Wu; Zhang, Chao; Liu, Xueduan; Rang, Zhongwen; Yin, Huaqun; Dai, Linjian

2017-01-01

Rotation is an effective strategy to control crop disease and improve plant health. However, the effects of crop rotation on soil bacterial community composition and structure, and crop health remain unclear. In this study, using 16S rRNA gene sequencing, we explored the soil bacterial communities under four different cropping systems, continuous tobacco cropping (control group), tobacco-maize rotation, tobacco-lily rotation, and tobacco-turnip rotation. Results of detrended correspondence analysis and dissimilarity tests showed that soil bacterial community composition and structure changed significantly among the four groups, such that Acidobacteria and Actinobacteria were more abundant in the maize rotation group (16.6 and 11.5%, respectively) than in the control (8.5 and 7.1%, respectively). Compared with the control group (57.78%), maize and lily were effective rotation crops in controlling tobacco bacterial wilt (about 23.54 and 48.67%). On the other hand, tobacco bacterial wilt rate was increased in the turnip rotation (59.62%) relative to the control. Further study revealed that the abundances of several bacterial populations were directly correlated with tobacco bacterial wilt. For example, Acidobacteria and Actinobacteria were significantly negatively correlated to the tobacco bacterial wilt rate, so they may be probiotic bacteria. Canonical correspondence analysis showed that soil pH and calcium content were key factors in determining soil bacterial communities. In conclusion, our study revealed the composition and structure of bacterial communities under four different cropping systems and may unveil molecular mechanisms for the interactions between soil microorganisms and crop health. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Seasonality and resource availability control bacterial and archaeal communities in soils of a temperate beech forest

PubMed Central

Rasche, Frank; Knapp, Daniela; Kaiser, Christina; Koranda, Marianne; Kitzler, Barbara; Zechmeister-Boltenstern, Sophie; Richter, Andreas; Sessitsch, Angela

2011-01-01

It was hypothesized that seasonality and resource availability altered through tree girdling were major determinants of the phylogenetic composition of the archaeal and bacterial community in a temperate beech forest soil. During a 2-year field experiment, involving girdling of beech trees to intercept the transfer of easily available carbon (C) from the canopy to roots, members of the dominant phylogenetic microbial phyla residing in top soils under girdled versus untreated control trees were monitored at bimonthly intervals through 16S rRNA gene-based terminal restriction fragment length polymorphism profiling and quantitative PCR analysis. Effects on nitrifying and denitrifying groups were assessed by measuring the abundances of nirS and nosZ genes as well as bacterial and archaeal amoA genes. Seasonal dynamics displayed by key phylogenetic and nitrogen (N) cycling functional groups were found to be tightly coupled with seasonal alterations in labile C and N pools as well as with variation in soil temperature and soil moisture. In particular, archaea and acidobacteria were highly responsive to soil nutritional and soil climatic changes associated with seasonality, indicating their high metabolic versatility and capability to adapt to environmental changes. For these phyla, significant interrelations with soil chemical and microbial process data were found suggesting their potential, but poorly described contribution to nitrification or denitrification in temperate forest soils. In conclusion, our extensive approach allowed us to get novel insights into effects of seasonality and resource availability on the microbial community, in particular on hitherto poorly studied bacterial phyla and functional groups. PMID:20882059

Correlation Between An In-vitro Method And An In-vivo Method In Assessing Bioavailable Arsenic In Two Pesticide-Amended Soils

NASA Astrophysics Data System (ADS)

Quazi, S.; Sarkar, D.; Sylvia, V.; Datta, R.

2006-05-01

Health risk assessment of Arsenic (As) enriched soil requires the estimation of bioavailable fraction of total metal. Research has been conducted to gain a better understanding of the relationship between metal availability and risk assessment. Some baseline risk assessments developed for contaminated sites have used the conservative assumption that all (i.e. 100%) of the As present in soils and wastes is bioavailable, due to tremendous cost associated with in-vivo bioavailability studies. This potentially overestimates the actual health risk, elevating the expenses associated with site cleanup. Health risk from direct exposure to soil-As via the hand-to-mouth exposure route is restricted only to those fractions of As in the soil that are available to the human gastrointestinal system. A reasonable approach is to develop in-vitro methods that simulate the complex and dynamic human gastrointestinal system and correlate well with the results of in-vivo method. Thus this study aims in addressing the potential of one such in-vitro method developed by our research group in assessing the bioavailability of soil-As. Two soils with drastically different chemical characteristics in regards to As reactivity (Immokalee-low As retention capacity; Millhopper-high As retention capacity) spiked with a pesticide (sodium arsenate) were used. Soils were amended at two rates representing concentrations typically found at Superfund sites: 675 and 1500 mg/kg of As. In-vitro bioavailability experiments were performed in order to obtain an estimate of the amount of As likely to be available in the human gastrointestinal system as well as the fraction potentially absorbed onto the intestinal linings. Following the in-vitro study selective in-vivo bioavailability studies using As-contaminated soils were conducted on male and female mice to validate the in-vitro results via comparison with the in-vivo data. Soils were administered orally to the BALB/c mice immediately after spiking. Treatments comprised of a soil group (As in soil), a positive control group (only As) and a negative control group (no soil, no As). Blood samples were collected at different time periods to determine As concentrations. Correlation between the in-vitro and in-vivo data was determined. Information obtained from this study will serve as the first step towards the future development of a semi-quantitative model for predicting bioavailable As. This in turn will result in designing appropriate, cost-effective remedial strategies for As contaminated sites. Keywords: Bioavailability, In-vitro, In-vivo, Arsenic, Soil, Risk Assessment

Eco-toxicity and metal contamination of paddy soil in an e-wastes recycling area.

PubMed

Jun-hui, Zhang; Hang, Min

2009-06-15

Paddy soil samples taken from different sites in an old primitive electronic-waste (e-waste) processing region were examined for eco-toxicity and metal contamination. Using the environmental quality standard for soils (China, Grade II) as reference, soil samples of two sites were weakly contaminated with trace metal, but site G was heavily contaminated with Cd (6.37 mg kg(-1)), and weakly contaminated with Cu (256.36 mg kg(-1)) and Zn (209.85 mg kg(-1)). Zn appeared to be strongly bound in the residual fraction (72.24-77.86%), no matter the soil was metal contaminated or not. However, more than 9% Cd and 16% Cu was present in the non-residual fraction in the metal contaminated soils than in the uncontaminated soil, especially for site G and site F. Compared with that of the control soil, the micronucleus rates of site G and site F soil treatments increased by 2.7-fold and 1.7-fold, respectively. Low germination rates were observed in site C (50%) and site G (50%) soil extraction treated rice seeds. The shortest root length (0.2377 cm) was observed in site G soil treated groups, which is only 37.57% of that of the control soil treated groups. All of the micronucleus ratio of Vicia faba root cells, rice germination rate and root length after treatment of soil extraction indicate the eco-toxicity in site F and G soils although the three indexes are different in sensitivity to soil metal contamination.

Permafrost and organic layer interactions over a climate gradient in a discontinuous permafrost zone

NASA Astrophysics Data System (ADS)

Johnson, Kristofer D.; Harden, Jennifer W.; McGuire, A. David; Clark, Mark; Yuan, Fengming; Finley, Andrew O.

2013-09-01

Permafrost is tightly coupled to the organic soil layer, an interaction that mediates permafrost degradation in response to regional warming. We analyzed changes in permafrost occurrence and organic layer thickness (OLT) using more than 3000 soil pedons across a mean annual temperature (MAT) gradient. Cause and effect relationships between permafrost probability (PF), OLT, and other topographic factors were investigated using structural equation modeling in a multi-group analysis. Groups were defined by slope, soil texture type, and shallow (<28 cm) versus deep organic (≥28 cm) layers. The probability of observing permafrost sharply increased by 0.32 for every 10-cm OLT increase in shallow OLT soils (OLTs) due to an insulation effect, but PF decreased in deep OLT soils (OLTd) by 0.06 for every 10-cm increase. Across the MAT gradient, PF in sandy soils varied little, but PF in loamy and silty soils decreased substantially from cooler to warmer temperatures. The change in OLT was more heterogeneous across soil texture types—in some there was no change while in others OLTs soils thinned and/or OLTd soils thickened at warmer locations. Furthermore, when soil organic carbon was estimated using a relationship with thickness, the average increase in carbon in OLTd soils was almost four times greater compared to the average decrease in carbon in OLTs soils across all soil types. If soils follow a trajectory of warming that mimics the spatial gradients found today, then heterogeneities of permafrost degradation and organic layer thinning and thickening should be considered in the regional carbon balance.

Permafrost and organic layer interactions over a climate gradient in a discontinuous permafrost zone

USGS Publications Warehouse

Johnson, Kristofer D.; Harden, Jennifer W.; McGuire, A. David; Clark, Mark; Yuan, Fengming; Finley, Andrew O.

2013-01-01

Permafrost is tightly coupled to the organic soil layer, an interaction that mediates permafrost degradation in response to regional warming. We analyzed changes in permafrost occurrence and organic layer thickness (OLT) using more than 3000 soil pedons across a mean annual temperature (MAT) gradient. Cause and effect relationships between permafrost probability (PF), OLT, and other topographic factors were investigated using structural equation modeling in a multi-group analysis. Groups were defined by slope, soil texture type, and shallow (<28 cm) versus deep organic (≥28 cm) layers. The probability of observing permafrost sharply increased by 0.32 for every 10-cm OLT increase in shallow OLT soils (OLTs) due to an insulation effect, but PF decreased in deep OLT soils (OLTd) by 0.06 for every 10-cm increase. Across the MAT gradient, PF in sandy soils varied little, but PF in loamy and silty soils decreased substantially from cooler to warmer temperatures. The change in OLT was more heterogeneous across soil texture types—in some there was no change while in others OLTs soils thinned and/or OLTd soils thickened at warmer locations. Furthermore, when soil organic carbon was estimated using a relationship with thickness, the average increase in carbon in OLTd soils was almost four times greater compared to the average decrease in carbon in OLTs soils across all soil types. If soils follow a trajectory of warming that mimics the spatial gradients found today, then heterogeneities of permafrost degradation and organic layer thinning and thickening should be considered in the regional carbon balance.

Metagenomic Analysis of Some Potential Nitrogen-Fixing Bacteria in Arable Soils at Different Formation Processes.

PubMed

Wolińska, Agnieszka; Kuźniar, Agnieszka; Zielenkiewicz, Urszula; Banach, Artur; Izak, Dariusz; Stępniewska, Zofia; Błaszczyk, Mieczysław

2017-01-01

The main goal of the study was to determine the diversity of the potential nitrogen-fixing (PNF) bacteria inhabiting agricultural (A) soils versus wastelands serving as controls (C). The soils were classified into three groups based on the formation process: autogenic soils (Albic Luvisols, Brunic Arenosols, Haplic Phaeozem) formed on loess material, hydrogenic soils (Mollic Gleysols, Eutric Fluvisol, Eutric Histosol) formed under the effect of stagnant water and lithogenic soils (Rendzina Leptosols) formed on limestone. In order to determine the preferable conditions for PNF bacteria, the relationships between the soil chemical features and bacterial operational taxonomic units (OTUs) were tested. Additionally, the nitrogen content and fertilisation requirement of the lithogenic (LG), autogenic (AG) and hydrogenic (HG) soils were discussed. The composition of the bacterial communities was analysed with the next-generation sequencing (NGS) by the Ion Torrent™ technology. The sequences were clustered into OTU based on a 99 % similarity threshold. The arable soils tested were distinctly dominated by β-Proteobacteria representatives of PNF bacteria belonging to the genus Burkholderia. Bacteria from the α-Proteobacteria class and Devosia genus were subdominants. A free-living Cyanobacteria population dominated in A rather than in C soils. We have found that both soil agricultural management and soil formation processes are the most conducive factors for PNF bacteria, as a majority of these microorganisms inhabit the AG group of soils, whilst the LG soils with the lowest abundance of PNF bacteria revealed the need for additional mineral fertilisation. Our studies have also indicated that there are close relationships between soil classification with respect to soil formation processes and PNF bacteria preference for occupation of soil niches.

Improved isolation of cadmium from paddy soil by novel technology based on pore water drainage with graphite-contained electro-kinetic geosynthetics.

PubMed

Tang, Xianqiang; Li, Qingyun; Wang, Zhenhua; Hu, Yanping; Hu, Yuan; Scholz, Miklas

2018-03-10

Novel soil remediation equipment based on electro-kinetic geosynthetics (EKG) was developed for in situ isolation of metals from paddy soil. Two mutually independent field plot experiments A and B (with and without electric current applied) were conducted. After saturation using ferric chloride (FeCl 3 ) and calcium chloride (CaCl 2 ), soil water drainage capacity, soil cadmium (Cd) removal performance, energy consumption as well as soil residual of iron (Fe) and chloride (Cl) were assessed. Cadmium dissolved in the soil matrix and resulted in a 100% increase of diethylenetriamine-pentaacetic acid (DTPA) extracted phyto-available Cd. The total soil Cd content reductions were 15.20% and 26.58% for groups A and B, respectively, and electric field applications resulted in a 74.87% increase of soil total Cd removal. The electric energy consumption was only 2.17 kWh/m 3 for group B. Drainage by gravity contributed to > 90% of the overall soil dewatering capacity. Compared to conventional electro-kinetic technology, excellent and fast soil water drainage resulted in negligible hydrogen ion (H + ) and hydroxide ion (OH - ) accumulation at nearby electrode zones, which addressed the challenge of anode corrosion and cathode precipitation of soil metals. External addition of FeCl 3 and CaCl 2 caused soil Fe and Cl residuals and led to 4.33-7.59% and 139-172% acceptable augments in soil total Fe and Cl content, correspondingly, if compared to original untreated soils. Therefore, the novel soil remediation equipment developed based on EKG can be regarded as a promising new in situ technology for thoroughly isolating metals from large-scale paddy soil fields.

Forest cockchafer larvae as methane production hotspots in soils and their importance for net soil methane fluxes

NASA Astrophysics Data System (ADS)

Görres, Carolyn-Monika; Kammann, Claudia; Murphy, Paul; Müller, Christoph

2016-04-01

Certain groups of soil invertebrates, namely scarab beetles and millipedes, are capable of emitting considerable amounts of methane due to methanogens inhabiting their gut system. It was already pointed out in the early 1990's, that these groups of invertebrates may represent a globally important source of methane. However, apart from termites, the importance of invertebrates for the soil methane budget is still unknown. Here, we present preliminary results of a laboratory soil incubation experiment elucidating the influence of forest cockchafer larvae (Melolontha hippocastani FABRICIUS) on soil methane cycling. In January/February 2016, two soils from two different management systems - one from a pine forest (extensive use) and one from a vegetable field (intensive use) - were incubated for 56 days either with or without beetle larvae. Net soil methane fluxes and larvae methane emissions together with their stable carbon isotope signatures were quantified at regular intervals to estimate gross methane production and gross methane oxidation in the soils. The results of this experiment will contribute to testing the hypothesis of whether methane production hotspots can significantly enhance the methane oxidation capacity of soils. Forest cockchafer larvae are only found in well-aerated sandy soils where one would usually not suspect relevant gross methane production. Thus, besides quantifying their contribution to net soil methane fluxes, they are also ideal organisms to study the effect of methane production hotspots on overall soil methane cycling. Funding support: Reintegration grant of the German Academic Exchange Service (DAAD) (#57185798).

Lateral water flux in the unsaturated zone: A mechanism for the formation of spatial soil heterogeneity in a headwater catchment

Treesearch

John P. Gannon; Kevin J. McGuire; Scott W. Bailey; Rebecca R. Bourgault; Donald S. Ross

2017-01-01

Measurements of soil water potential and water table fluctuations suggest that morphologically distinct soils in a headwater catchment at the Hubbard Brook Experimental Forest in New Hampshire formed as a result of variations in saturated and unsaturated hydrologic fluxes in the mineral soil. Previous work showed that each group of these soils had distinct water table...

The EDTA Amendment in Phytoextraction of (134)Cs From Soil by Indian Mustard (Brassica juncea).

PubMed

Tjahaja, Poppy Intan; Sukmabuana, Putu; Roosmini, Dwina

2015-01-01

Soil contamination with radiocaesium is a significant problem at any countries when a nuclear accident occurred. Recently, phytoextraction technique is developed to remediate the contaminated environment. However, the application is limited by the availability of the contaminant for root uptake. Therefore, a green house trial experiment of soil amendment with ethylene diamine tetraacetic acid (EDTA) has been conducted to examine (134)Cs availability for root uptake. Two groups of Indian mustard (Brassica juncea) were cultivated in (134)Cs contaminated soil. The soil in the first group was treated with EDTA amendment, while the other was not. Plant growth was observed gravimetrically and the (134)Cs concentration in soil as well as plants were determined using gamma spectrometry. The plant uptake capacity was determined as transfer factor (Fv), and the Fv values of 0.22 ± 0.0786 and 0.12 ± 0.039 were obtained for the soil treated with and without EDTA amendment, respectively. The phytoextraction efficiency of the plant cultivated in (134)Cs contaminated soil both with and without EDTA amendment was low. The EDTA amendment to the soil seems to enhance the (134)Cs availability for root uptake of Indian mustard and can still be considered to assist the field phytoremediation of contaminated soil.

Vermicompost and biochar as bio-conditioners to immobilize heavy metal and improve soil fertility on cadmium contaminated soil under acid rain stress.

PubMed

Wang, Ying; Xu, YongAn; Li, Dan; Tang, BiCong; Man, ShuLei; Jia, YiFan; Xu, Heng

2018-04-15

This experiment was conducted to investigate the remediation effects of bio-conditioners vermicompost (VC) and biochar (BC) on cadmium contaminated soil under the threat of acid rain, individually and associatively. With the application of soil conditioners, the percentages of HOAc-extractable Cd decreased 5.2-6.8%, 9.0-13.5% and 7.9-12.1% in the groups amended with VC, BC and VC combined BC, respectively. When the pH of rain decreased from 7.0 to 4.0, the activity of acid phosphatase decreased 2.0%, 12.3%, 3.2%, 14.8% in VC, BC, VC combined BC and control groups, individually. This study affirmed that with the application of soil conditioners, the threat of heavy metal along with bioavailability of Cd was depressed, and the properties of soil biochemical indictors were enhanced. Oppositely, the bioavailability of Cd was promoted, and soil microbial viability as well as nutrient contents was inhibited with the spraying of acid rain. The findings indicated that acid deposition played a restrain effect on soil remediation process. Meanwhile, soil conditioners showed potentials to improve soil fertilities and alleviate the stress of acid rain. Copyright © 2017. Published by Elsevier B.V.

Classification of andisol soil on robusta coffee plantation in Silima Pungga - Pungga District

NASA Astrophysics Data System (ADS)

Marbun, P.; Nasution, Z.; Hanum, H.; Karim, A.

2018-02-01

The survey study aims to classify the Inceptisol soil on Robusta coffee plantation in Silima Pugga-Pungga District, from Order level to Sub Group level. The study was conducted on location of sample soil profiles which were determined based on Soil Map Unit (SMU) with the main Andisol Order, i.e. SMU 12, SMU 15 and SMU 17 of 18 existing SMU. The soil profiles were described to determine the morphological characteristics of the soil, while the physical and chemical properties were done by laboratory analysis. The soil samples were taken from each horizon in each profile and analyzed in the laboratory in the form of soil texture, bulk density, pH H2O, pH KCl, pH NaF, C-organic, exchangeable bases (Ca2+, Mg2+, K+, Na+), ZPC (zero point charge), base saturation, cation exchange capasity (CEC), P-retention, Al-Oxalate (Al-O) and Si-Oxalate (Si-O). The results showed that the classification of Andisol soil based on Soil Taxonomy only has one Sub Group namely Typic Hapludand. It is expected that the results of this study can provide information for more appropriate land management in order to increase the production of Robusta coffee plant in Silima Pungga-Pungga Sub district.

Orion Landing Simulation Eight Soil Model Comparison

NASA Technical Reports Server (NTRS)

Mark, Stephen D.

2009-01-01

LS-DYNA finite element simulations of a rigid Orion Crew Module (CM) were used to investigate the CM impact behavior on eight different soil models. Ten different landing conditions, characterized by the combination of CM vertical and horizontal velocity, hang angle, and roll angle were simulated on the eight different soils. The CM center of gravity accelerations, pitch angle, kinetic energy, and soil contact forces were the outputs of interest. The simulation results are presented, with comparisons of the CM behavior on the different soils. The soils analyzed in this study can be roughly categorized as soft, medium, or hard, according to the CM accelerations that occur when landing on them. The soft group is comprised of the Carson Sink Wet soil and the Kennedy Space Center (KSC) Low Density Dry Sand. The medium group includes Carson Sink Dry, the KSC High Density In-Situ Moisture Sand and High Density Flooded Sand, and Cuddeback B. The hard soils are Cuddeback A and the Gantry Unwashed Sand. The softer soils were found to produce lower peak accelerations, have more stable pitch behavior, and to be less sensitive to the landing conditions. This investigation found that the Cuddeback A soil produced the highest peak accelerations and worst stability conditions, and that the best landing performance was achieved on the KSC Low Density Dry Sand.

Variable Charge Soils: Mineralogy and Chemistry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qafoku, Nik; Van Ranst, Eric; Noble, Andrew

2003-11-01

Soils rich in particles with amphoteric surface properties in the Oxisols, Ultisols, Alfisols, Spodosols and Andisols orders (1) are considered variable charge soils (2). The term “variable charge” is used to describe organic and inorganic soil constituents with reactive surface groups whose charge varies with pH, ionic concentration and composition of the soil solution. Such groups are the surface carboxyl, phenolic and amino functional groups of organic materials in soils, and surface hydroxyl groups of Fe and Al oxides, allophane and imogolite. The hydroxyl surface groups are also present on edges of some phyllosilicate minerals such as kaolinite, mica, andmore » hydroxyl-interlayered vermiculite. The variable charge is developed on the surface groups as a result of adsorption or desorption of ions that are constituents of the solid phase, i.e., H+, and the adsorption or desorption of solid-unlike ions that are not constituents of the solid. Highly weathered soils usually undergo isoeletric weathering and reach a “zero net charge” stage during their development. They have a slightly acidic to acidic soil solution pH, which is close to either point of zero net charge (PZNC) (3) or point of zero salt effect (PZSE) (3). They are characterized by high abundances of minerals with a point of zero net proton charge (PZNPC) (3) at neutral and slightly basic pHs; the most important being Fe and Al oxides and allophane. Under acidic conditions, the surfaces of these minerals are net positively charged. In contrast, the surfaces of permanent charge phyllosilicates are negatively charged regardless of ambient conditions. Variable charge soils therefore, are heterogeneous charge systems. The coexistence and interactions of oppositely charged surfaces or particles confers a different pattern of physical and chemical behavior on the soil, relatively to a homogeneously charged system of temperate regions. In some variable charge soils (Oxisols and some Ultisols developed on ferromagnesian-rich parent materials) the surfaces of phyllosilicates are coated to a lesser or greater extent by amorphous or crystalline, oppositely charged nanoparticles of Fe and Al oxides. These coatings exhibit a high reactive surface area and help cementing larger particles with one another. As a result of these electrostatic interactions, stable microaggregates that are difficult to disperse are formed in variable charge soils. Most of highly weathered soils have reached the “advanced stage” of Jackson-Sherman weathering sequence that is characterized by the removal of Na, K, Ca, Mg, and Fe(II), the presence of Fe and Al polymers, and very dilute soil solutions with an ionic strength (IS) of less than 1 mmol L-1. The inter-penetration or overlapping of the diffuse double layers on oppositely charged surfaces may occur in these dilute systems. These diffuse layer interactions may affect the magnitude of the effective charge, i.e., the counter-ion charge (4). In addition, salt adsorption, which is defined as the simultaneous adsorption in equivalent amounts of the cation and anion of an electrolyte with no net release of other ions into the soil solution, appears to be a common phenomenon in these soils. They act as cation- and anion-exchangers and as salt-sorbers. The magnitude of salt adsorption depends strongly on initial IS in the soil solution and the presence in appreciable amounts of oppositely charged surfaces. Among the authors that have made illustrious contributions towards a better understanding of these fascinating soil systems are S. Matson, R.K. Schofield, van Olphen, M.E. Sumner, G.W. Thomas, G.P. Gillman, G. Uehara, B.K.G. Theng, K. Wada, N.J. Barrow, J.W. Bowden, R.J. Hunter and G. Sposito. This entry is mainly based on publications by these authors.« less

Results of the 1998 Field Demonstration and Preliminary Implementation Guidance for Phytoremediation of Lead-Contaminated Soil at the Twin Cities Army Ammunition Plant, Arden Hills, Minnesota

DTIC Science & Technology

1999-03-01

Results of the 1998 Field Demonstration and Preliminary Implementation Guidance for Phytoremediation of Lead-Contaminated Soil at the Twin... Phytoremediation of Lead-Contaminated Soil at the Twin Cities Army Ammunition Plant, Arden Hills, Minnesota. 12. PERSONAL AUTHOR(S) A. P. Behel, Jr...CODES FIELD GROUP SUB-GROUP 18. SUBJECT TERMS (Continue on reverse if necessary and identify by block number) Phytoremediation of Lead-Contaminated

Characterization and evolution of dissolved organic matter in acidic forest soil and its impact on the mobility of major and trace elements (case of the Strengbach watershed)

NASA Astrophysics Data System (ADS)

Gangloff, Sophie; Stille, Peter; Pierret, Marie-Claire; Weber, Tiphaine; Chabaux, François

2014-04-01

Dissolved Organic Carbon (DOC) plays an important role in the behavior of major and trace elements in the soil and influences their transfer from soil to soil solution. The first objective of this study is to characterize different organic functional groups for the Water Extractable Organic Carbon (WEOC) fractions of a forest soil as well as their evolution with depth. The second objective is to clarify the influence of these organic functional groups on the migration of the trace elements in WEOC fractions compared to those in the soil solution obtained by lysimeter plates. All experiments have been performed on an acidic forest soil profile (five depths in the first meter) of the experimental spruce parcel in the Stengbach catchment. The Infra-red spectra of the freeze-dried WEOC fractions show a modification of the molecular structure with depth, i.e. a decrease of the polar compounds such as polysaccharides and an increase of the less polar hydro-carbon functional groups with a maximum value of the aromaticity at 30 cm depth. A Hierarchical Ascending Classification (HAC) of the evolution of Water Extractable Chemical Elements (WECE) with the evolution of the organic functional groups in the organic matter (OM) enriched soil compartments permits recognition of relationships between trace element behavior and the organic functional group variations. More specifically, Pb is preferentially bound to the carboxylic acid function of DOC mainly present in the upper soil compartment and rare earth elements (REE) show similar behavior to Fe, V and Cr with a good affinity to carboxy-phenolic and phenolic groups of DOC. The experimental results show that heavy REE compared to light REE are preferentially bound to the aromatic functional group. This different behavior fractionates the REE pattern of soil solutions at 30 cm depth due to the here observed aromaticity enrichment of DOC. These different affinities for the organic functional groups of the DOC explain some aspects of the behavior of trace elements in soil solutions and in the soil profile but, also the competition between trace elements in complexation with DOC. The results of this study are important for the understanding of the mobility and the migration of pollutants (as heavy metals or radionuclides) as well as nutrients in natural ecosystems. WE PrN/YbN is constant between 3 and 16 cm depth whereas SS PrN/YbN slightly decreases from 0.80 at 5 cm depth to 0.74 at 10 cm depth. This results from Pr (LREE) enrichment in the soil solution of the upper soil compartment caused by vegetation controlled LREE recycling and/or atmospheric depositions (see above). WE PrN/YbN and SS PrN/YbN show similar depth dependent distributions including the enrichment at 30 cm depth. It results from Yb depletion at this depth and enrichment in the deeper soil compartment compared to Pr. Similar to Marsac et al. (2012, 2013) one might suggest that there is competition between Fe3+, Al3+ and REE for the binding with DOC. They have a high affinity with the same organic functional groups which is confirmed by the classification scheme (Fig. 8). The studies of Marsac et al. suggest that at acidic pH and low metal/DOC ratios, Fe3+and Al3+ compete more with HREE than LREE; moreover, at high metal/DOC ratios and acidic pH, Al3+ competes with LREE. The Fig. 13 showing the variations of WECEN for Al and Fe in function of WECEN LREE and HREE confirms Marsac et al.’s observations. The slope of the extrapolation line resulting from WECEN Al and HREE values remains rather unchanged for the OM depleted and enriched soil compartments; thus, the change in the metal/DOC ratio in the soil does not change the extraction behavior of Al and HREE. However, the WECEN Fe strongly increase compared to the corresponding HREE values in the OM enriched compartment pointing to the competition between Fe and HREE. Alternatively, one observes that the WECEN Fe and LREE values in the OM enriched compartment plot on the extrapolation line derived from OM depleted soil samples. Thus, in this case, the change in the metal/DOC ratio does not affect the extraction behavior of Fe and LREE. However, the WECEN values for Al and corresponding LREE of samples from the OM enriched soil compartment plot below the extrapolation line and point to the competition between Al and LREE. These results are also in agreement with the REE distribution pattern of the soil solutions from the same site which are at greater depth LREE depleted (Stille et al., 2009).

Application of fluorescent microscopy and cascade filtration methods for analysis of soil microbial community

NASA Astrophysics Data System (ADS)

Ivanov, Konstantin; Pinchuk, Irina; Gorodnichev, Roman; Polyanskaya, Lubov

2016-04-01

Methods establishment of soil microbial cells size estimation called from the importance of current needs of research in microbial ecology. Some of the methods need to be improved for more detailed view of changes happen in microbiome of terrestrial ecosystems. The combination of traditional microscopy methods, fluorescence and filtration in addition to cutting-edge DNA analysis gives a wide range of the approaches for soil microbial ecologists in their research questions. In the most of the cases the bacterial cells size is limited of the natural conditions such as lack of nutrients or stress factors due to heterogeneity of soil system. In the samples of soils, lakes and rivers sediments, snow and rain water the bacterial cells were detected minimally of 0.2 microns. We established the combination of the cascade filtration and fluorescent microscopy for complex analysis of different terrestrial ecosystems and various soil types. Our modification based on the use of successively filtered soil suspension for collection of microbes by the membrane pores decrease. Combination with fluorescence microscopy and DNA analysis via FISH method gave the presentation of microbial interactions and review of ecological strategies of soil microorganisms. Humus horizons of primitive arctic soil were the most favorable for bacterial growth. Quantified biomass of soil bacteria depends on the dominance of cells with specific dimensions caused of stress factors. The average bacterial size of different soil varied from 0.23 to 0.38 microns, however in humus horizons of arctic soil we detected the contrast dominance of the bigger bacterial cells sized of 1.85 microns. Fungi in this case contributed to increase the availability of organic matter for bacteria because the fungal mycelium forms the appreciable part of microbial biomass of primitive arctic soil. The dominant content of bigger bacterial cells in forest and fallow soil as well as the opposite situation in arable soils caused by the availability of nutrients (glucose) and the degree of agricultural anthropogenic stress. Various combinations of factors such as stressful conditions (anaerobiosis, acidity and temperature) influenced on bacterial size. The decrease of these stress factors resulted in return to the original bacterial cell size in soil. Furthermore the modification of gram-negative bacteria quantification was performed and combined with FISH method and DNA extraction. We established the methodological comparison of gram-negative bacteria groups in aerobic and anaerobic conditions. Due to absence of significant difference between the most frequent soil gram-negative bacteria groups we concluded the important ecological role of gram-negative bacteria as common group of microorganisms in natural polymer degradation. Depending on nutrient (glucose, cellulose, chitin) gram-negative bacteria competed with actinomyces for available nutrients at the different time, what explained by the ecological flexibility of this soil bacteria group. The experiments showed expressed faster chitinolytic activity of soil gram-negative bacteria compare to actinomyces. Thus our approaches to use the combination both traditional and cutting-edge methods, forms the unique basement for various research and mostly open the wide doors to design new scientific experiments in ecology of terrestrial ecosystems and especially in soil microbial ecology.

[Impact of periodical flooding-drying on nitrification and ammonia oxidizers in hydro-fluctuation belt of the Three Gorges Reservoir].

PubMed

Guo, Jia; Jiang, Xianjun; Zhou, Xue; Meng, Yao; Jia, Zhongjun

2016-06-04

This study was aimed to elucidate the effect of periodic flooding-drying to ecological processes of ammonia oxidizers in the hydro-fluctuation belt of the Three Gorges Reservoir. Soil samples were collected at thee altitudes in regions of Wanzhou, Fengdu and Changshou, representing 8, 5 and 0 times floodingdrying management, respectively. Soil physiochemical properties were analyzed and microcosms were constructed to monitor nitrification activity by fertilizing soils with ammonium substrate. Real-time PCR was used to quantify the population size of ammonia-oxidizing archaea (AOA) and bacteria (AOB). DGGE fingerprints and clone libraries were conducted to study the shift of AOA and AOB compositions in nitrifying soils. Among the physiochemical characteristics of the soils, soil organic matter and total phosphates increased along with cycle increasing. After incubation for 13 days, the net nitrification rates of the samples with 8 cycles exceeded those with 5 cycles. The quantities of both AOA and AOB have increased during the incubation. Phylogenetic analysis showed that AOA were placed within the soil group 1.1b and soil group 1.1a, while bacterial ammonia oxidizers were closely related to Nitrosospira and Cluster 0. Periodical flooding-drying increased soil organic matter, enhanced soil nitrification activity and likely played important roles in shaping community structures of soil ammonia oxidizers.

Factors affecting temporal and spatial soil moisture variation in and adjacent to group selection openings

Treesearch

W.H. McNab

1991-01-01

Soil moisture content was intensively sampled in three, 1-acre blocks containing an opening and surrounding mature upland hardwoods. Openings covering 0.19-0.26 ac were created by group-selection cutting, and they were occupied by 1-year-old trees and shrubs.

ANZSoilML: An Australian - New Zealand standard for exchange of soil data

NASA Astrophysics Data System (ADS)

Simons, Bruce; Wilson, Peter; Ritchie, Alistair; Cox, Simon

2013-04-01

The Australian-New Zealand soil information exchange standard (ANZSoilML) is a GML-based standard designed to allow the discovery, query and delivery of soil and landscape data via standard Open Geospatial Consortium (OGC) Web Feature Services. ANZSoilML modifies the Australian soil exchange standard (OzSoilML), which is based on the Australian Soil Information Transfer and Evaluation System (SITES) database design and exchange protocols, to meet the New Zealand National Soils Database requirements. The most significant change was the removal of the lists of CodeList terms in OzSoilML, which were based on the field methods specified in the 'Australian Soil and Land Survey Field Handbook'. These were replaced with empty CodeLists as placeholders to external vocabularies to allow the use of New Zealand vocabularies without violating the data model. Testing of the use of these separately governed Australian and New Zealand vocabularies has commenced. ANZSoilML attempts to accommodate the proposed International Organization for Standardization ISO/DIS 28258 standard for soil quality. For the most part, ANZSoilML is consistent with the ISO model, although major differences arise as a result of: • The need to specify the properties appropriate for each feature type; • The inclusion of soil-related 'Landscape' features; • Allowing the mapping of soil surfaces, bodies, layers and horizons, independent of the soil profile; • Allowing specifying the relationships between the various soil features; • Specifying soil horizons as specialisations of soil layers; • Removing duplication of features provided by the ISO Observation & Measurements standard. The International Union of Soil Sciences (IUSS) Working Group on Soil Information Standards (WG-SIS) aims to develop, promote and maintain a standard to facilitate the exchange of soils data and information. Developing an international exchange standard that is compatible with existing and emerging national and regional standards is a considerable challenge. ANZSoilML is proposed as a profile of the more generalised SoilML model being progressed through the IUSS Working Group.

Assessment of soil biological quality index (QBS-ar) in different crop rotation systems in paddy soils

NASA Astrophysics Data System (ADS)

Nadimi-Goki, Mandana; Bini, Claudio; haefele, Stephan

2013-04-01

New methods, based on soil microarthropods for soil quality evaluation have been proposed by some Authors. Soil microarthropods demonstrated to respond sensitively to land management practices and to be correlated with beneficial soil functions. QBS Index (QBS-ar) is calculated on the basis of microarthropod groups present in a soil sample. Each biological form found in the sample receives a score from 1 to 20 (eco-morphological index, EMI), according to its adaptation to soil environment. The objective of this study was to evaluate the effect of various rotation systems and sampling periods on soil biological quality index, in paddy soils. For the purpose of this study surface soil samples (0-15 cm depth) were collected from different rotation systems (rice-rice-rice, soya-rice-rice, fallow-rice and pea-soya-rice) with three replications, and four sampling times in April (after field preparation), June (after seedling), August (after tillering stage) and October (after rice harvesting). The study area is located in paddy soils of Verona area, Northern Italy. Soil microarthropods from a total of 48 samples were extracted and classified according to the Biological Quality of Soil Index (QBS-ar) method. In addition soil moisture, Cumulative Soil Respiration and pH were measured in each site. More diversity of microarthropod groups was found in June and August sampling times. T-test results between different rotations did not show significant differences while the mean difference between rotation and different sampling times is statistically different. The highest QBS-ar value was found in the fallow-rice rotation in the forth soil sampling time. Similar value was found in soya-rice-rice rotation. Result of linear regression analysis indicated that there is significant correlation between QBS-ar values and Cumulative Soil Respiration. Keywords: soil biological quality index (QBS-ar), Crop Rotation System, paddy soils, Italy

The strength of negative plant-soil feedback increases from the intraspecific to the interspecific and the functional group level.

PubMed

Bukowski, Alexandra R; Schittko, Conrad; Petermann, Jana S

2018-02-01

One of the processes that may play a key role in plant species coexistence and ecosystem functioning is plant-soil feedback, the effect of plants on associated soil communities and the resulting feedback on plant performance. Plant-soil feedback at the interspecific level (comparing growth on own soil with growth on soil from different species) has been studied extensively, while plant-soil feedback at the intraspecific level (comparing growth on own soil with growth on soil from different accessions within a species) has only recently gained attention. Very few studies have investigated the direction and strength of feedback among different taxonomic levels, and initial results have been inconclusive, discussing phylogeny, and morphology as possible determinants. To test our hypotheses that the strength of negative feedback on plant performance increases with increasing taxonomic level and that this relationship is explained by morphological similarities, we conducted a greenhouse experiment using species assigned to three taxonomic levels (intraspecific, interspecific, and functional group level). We measured certain fitness-related aboveground traits and used them along literature-derived traits to determine the influence of morphological similarities on the strength and direction of the feedback. We found that the average strength of negative feedback increased from the intraspecific over the interspecific to the functional group level. However, individual accessions and species differed in the direction and strength of the feedback. None of our results could be explained by morphological dissimilarities or individual traits. Synthesis . Our results indicate that negative plant-soil feedback is stronger if the involved plants belong to more distantly related species. We conclude that the taxonomic level is an important factor in the maintenance of plant coexistence with plant-soil feedback as a potential stabilizing mechanism and should be addressed explicitly in coexistence research, while the traits considered here seem to play a minor role.

Adsorption and degradation of 14C-bisphenol A in a soil trench.

PubMed

Shen, Jian; Wang, Xin-Ze; Zhang, Zhen; Sui, Yan-Ming; Wu, Hai-Lu; Feng, Ji-Meng; Tong, Xin-Nan; Zhang, Zhen-Yu

2017-12-31

Bisphenol A (BPA) has caused widespread concern among scholars as a result of its estrogenic toxicity. It exists mainly in natural waters, sediments, and soil, as well as sewage and wastewater sludge. Considering that BPA is a common environmental pollutant that is removed along with chemical oxygen demand (COD), nitrogen, and phosphorus in drainage treatment systems, it is important to research the fate of BPA in sewage treatment systems. In this research, laboratory batch experiments on soil degradation and adsorption were conducted with 14 C-BPA, aiming to discuss the transport and degradation characteristics of BPA in both simulated facilities and a soil trench. Based on the experimental results, the Freundlich model could be applied to fit the isothermal adsorption curve of the BPA in soil. A low mobility characteristic of BPA was discovered. The mineralization rate of BPA was fast and that of the reaction showed small fluctuations. After degradation, 21.3 and 17.7% of the BPA groups (the experimental group treated with ammonia oxidase (AMO) inhibitor and the control group) were converted into 14 CO 2 , respectively. This indicates that the nitrification and degradation of BPA had a certain competitive relationship. Besides, nitrification did not significantly affect the soil residue of BPA. Through the soil trench test, the average removal rate of BPA in the soil trench was 85.5%. 14 CO 2 was discharged via the mineralization of BPA, accounting for 2.5% of the initial input. BPA easily accumulated in the bottom soil of the soil trench. BPA and its metabolites in the effluent accounted for 14.5% of the initial dosage. The residual extractable BPA and its metabolites in the soil accounted for 51.3%, and the remaining part of the unextractable residue represented 19.8% of the initial radioactive dosage. Copyright © 2017 Elsevier B.V. All rights reserved.

Identifying the microbial taxa that consistently respond to soil warming across time and space.

PubMed

Oliverio, Angela M; Bradford, Mark A; Fierer, Noah

2017-05-01

Soil microbial communities are the key drivers of many terrestrial biogeochemical processes. However, we currently lack a generalizable understanding of how these soil communities will change in response to predicted increases in global temperatures and which microbial lineages will be most impacted. Here, using high-throughput marker gene sequencing of soils collected from 18 sites throughout North America included in a 100-day laboratory incubation experiment, we identified a core group of abundant and nearly ubiquitous soil microbes that shift in relative abundance with elevated soil temperatures. We then validated and narrowed our list of temperature-sensitive microbes by comparing the results from this laboratory experiment with data compiled from 210 soils representing multiple, independent global field studies sampled across spatial gradients with a wide range in mean annual temperatures. Our results reveal predictable and consistent responses to temperature for a core group of 189 ubiquitous soil bacterial and archaeal taxa, with these taxa exhibiting similar temperature responses across a broad range of soil types. These microbial 'bioindicators' are useful for understanding how soil microbial communities respond to warming and to discriminate between the direct and indirect effects of soil warming on microbial communities. Those taxa that were found to be sensitive to temperature represented a wide range of lineages and the direction of the temperature responses were not predictable from phylogeny alone, indicating that temperature responses are difficult to predict from simply describing soil microbial communities at broad taxonomic or phylogenetic levels of resolution. Together, these results lay the foundation for a more predictive understanding of how soil microbial communities respond to soil warming and how warming may ultimately lead to changes in soil biogeochemical processes. © 2016 John Wiley & Sons Ltd.

Effect of long-term farming strategies on soil microbiota and soil health

NASA Astrophysics Data System (ADS)

Sommermann, Loreen; Babin, Doreen; Sandmann, Martin; Smalla, Kornelia; Schellenberg, Ingo; Grosch, Rita; Geistlinger, Joerg

2017-04-01

Increasing food and energy demands have resulted in considerable intensification of farming practices, which brought about severe consequences for agricultural soils, e.g. loss of fertility, erosion and enrichment of soil-borne plant diseases. In order to maintain soil quality and health for the future, the development of more extensive and sustainable farming strategies is urgently needed. The soil microbiome is regarded as a key player in soil ecosystem functions, particularly the natural ability of soils to suppress plant pathogens (suppressiveness). Recent studies showed that soil microbial communities are influenced by agricultural management. To further analyze the effects of farming strategies on soil suppressiveness and plant performance, agricultural soils from three long-term field trials in Thyrow, Bernburg (both in Germany) and Therwil (Switzerland) were sampled and subjected to molecular profiling of soil bacteria and fungi using marker genes and high-throughput amplicon sequencing. Significant effects on bacterial as well as fungal community composition, including plant pathogenic and beneficial taxa, were observed among variants of tillage and crop rotation. The least effect on both communities had fertilization, with no significance between variants. Subsequently, the same soils were subjected to growth chamber pot experiments with lettuce as a model (Lactuca sativa). After a growth period of six weeks significant differences in lettuce shoot and soil microbial biomass were observed among soil samples of the different long-term trials. Furthermore, the lettuce rhizosphere exhibited diverse bacterial community compositions as observed by DGGE (denaturing gradient gel electrophoresis). Using group-specific PCR-DGGE fingerprints, bacterial responders to fertilization, soil management and crop rotation were identified among different taxonomic groups. Currently, bacterial and fungal amplicon sequencing of rhizosphere and bulk soil from these pot experiments is ongoing in order to provide further insights into taxa potentially indicative for agricultural management and soil health. Presently, we are testing the potential of the different soil microbiomes to suppress the lettuce pathogen Rhizoctonia solani.

Revisiting classic water erosion models in drylands: The strong impact of biological soil crusts

USGS Publications Warehouse

Bowker, M.A.; Belnap, J.; Bala, Chaudhary V.; Johnson, N.C.

2008-01-01

Soil erosion and subsequent degradation has been a contributor to societal collapse in the past and is one of the major expressions of desertification in arid regions. The revised universal soil loss equation (RUSLE) models soil lost to water erosion as a function of climate erosivity (the degree to which rainfall can result in erosion), topography, soil erodibility, and land use/management. The soil erodibility factor (K) is primarily based upon inherent soil properties (those which change slowly or not at all) such as soil texture and organic matter content, while the cover/management factor (C) is based on several parameters including biological soil crust (BSC) cover. We examined the effect of two more precise indicators of BSC development, chlorophyll a and exopolysaccharides (EPS), upon soil stability, which is closely inversely related to soil loss in an erosion event. To examine the relative influence of these elements of the C factor to the K factor, we conducted our investigation across eight strongly differing soils in the 0.8 million ha Grand Staircase-Escalante National Monument. We found that within every soil group, chlorophyll a was a moderate to excellent predictor of soil stability (R2 = 0.21-0.75), and consistently better than EPS. Using a simple structural equation model, we explained over half of the variance in soil stability and determined that the direct effect of chlorophyll a was 3?? more important than soil group in determining soil stability. Our results suggest that, holding the intensity of erosive forces constant, the acceleration or reduction of soil erosion in arid landscapes will primarily be an outcome of management practices. This is because the factor which is most influential to soil erosion, BSC development, is also among the most manageable, implying that water erosion in drylands has a solution. ?? 2008 Elsevier Ltd.

The soil microbial community composition and soil microbial carbon uptake are more affected by soil type than by different vegetation types (C3 and C4 plants) and seasonal changes

NASA Astrophysics Data System (ADS)

Griselle Mellado Vazquez, Perla; Lange, Markus; Gleixner, Gerd

2016-04-01

This study investigates the influence of different vegetation types (C3 and C4 plants), soil type and seasonal changes on the soil microbial biomass, soil microbial community composition and soil microbial carbon (C) uptake. We collected soil samples in winter (non-growing season) and summer (growing season) in 2012 from an experimental site cropping C3 and C4 plants for 6 years on two different soil types (sandy and clayey). The amount of phospholipid fatty acids (PLFAs) and their compound-specific δ13C values were used to determined microbial biomass and the flow of C from plants to soil microorganisms, respectively. Higher microbial biomass was found in the growing season. The microbial community composition was mainly explained by soil type. Higher amounts of SOC were driving the predominance of G+ bacteria, actinobacteria and cyclic G- bacteria in sandy soils, whereas root biomass was significantly related to the increased proportions of G- bacteria in clayey soils. Plant-derived C in G- bacteria increased significantly in clayey soils in the growing season. This increase was positively and significantly driven by root biomass. Moreover, changes in plant-derived C among microbial groups pointed to specific capabilities of different microbial groups to decompose distinct sources of C. We concluded that soil texture and favorable growth conditions driven by rhizosphere interactions are the most important factors controlling the soil microbial community. Our results demonstrate that a change of C3 plants vs. C4 plants has only a minor effect on the soil microbial community. Thus, such experiments are well suited to investigate soil organic matter dynamics as they allow to trace the C flow from plants into the soil microbial community without changing the community abundance and composition.

Effects of different management practices on fungal biodiversity in agricultural soils

NASA Astrophysics Data System (ADS)

Borriello, R.; Lumini, E.; Bonfante, P.; Bianciotto, V.

2009-04-01

Symbiotic associations between arbuscular mycorrhizal fungi (AMF) and plant roots are widespread in natural environments and provide a range of benefits to the host plant. These include improved nutrition, enhanced resistance to soil-borne pests, diseases, and drought, as well as tolerance to heavy metals. In addition, the presence of a well developed AMF hyphal network improve the soil structure. As obligate mutualistic symbionts these fungi colonize the roots of many agricultural crops and it is often claimed that agricultural practices (use of fertilizers and biocides, tillage, dominance of monocultures and the growing of non-mycorrhizal crops) are detrimental to AMF. As a result, agro ecosystems impoverished in AMF may not get the fully expected range of benefits from these fungi. Using molecular markers on DNA extracted directly from soil and roots we studied the effects of different management practices (tillage and nitrogen fertilization) on the AMF populations colonizing an experimental agro ecosystem in Central Italy. Fungi in roots and soil were identified by cloning and sequencing a region of ~550bp of the 18S rDNA and ~600bp of the 28S rDNA. In symbiosis with the maize roots we detected only members of Glomeraceae group A that showed decrement in number under nitrogen fertilization. Instead in soil were mainly present members of two AMF groups, respectively Gigasporaceae and Glomeraceae group A. In addition only the low input management practices preserve also members of Diversisporaceae and Glomeraceae group B. From our study we can conclude that agricultural practices can directly or indirectly influence AMF biodiversity. The result of this study highlight the importance and significant effects of the long term nitrogen fertilization and tillage practices on specific groups of fungi playing a key role in arable soils. The research was founded by Biodiversity Project (IPP-CNR) and by SOILSINK (FISR-MIUR)

The World Soil Museum: education and advocacy on soils of the world

NASA Astrophysics Data System (ADS)

Mantel, Stephan; Land, Hiske

2013-04-01

The World Soil Museum (WSM) in Wageningen, is part of ISRIC World Soil Information and was founded in 1966 on request of the United Nations Educational, Scientific and Cultural Organization (UNESCO) and the International Soil Science Society. The World Soil Museum has a collection of over 1100 soil profiles from more than 70 countries. This soil profiles are vertical sections and show the composition, layering and structure of the soil. The collection is unique in the world and includes a significant number of soil profiles from the Netherlands. The Dutch soil collection is important for serving broader visitor groups, as some visitors, such as secondary school classes, are specifically interested in the Dutch landscape and soils. Broadly speaking, the World Soil Museum has five functions: (i) education and courses, (ii) research, (iii) information and edutainment, (iv) social function, and (v) a real museum function (Art). The World Soil Museum (World Soil Museum) is well known in national and international circles soil and the English name has almost 1,000 references on the Internet. The World Soil Museum is visited by about 1000 people a year, mainly university and college students from Western Europe. Other visitor groups that have found their way to the museum are students from disciplines broader then soil science, such as geography and rural development. Secondary school classes visit the museum for geography classes. The uniqueness and the value of the collection of soil profiles (soil monoliths) and associated collections, such as soil samples, hand pieces, thin sections, slides, is emphasized by the fact ISRIC is the only World Data Centre for Soils (WDC-Soils) within the World Data System of the International Council of Science (ICSU). The collection provides an insight in and overview of the diversity of soils in the world, their properties and their limitations and possibilities for use. A new building is under construction for the WSM, which is expected to be ready mid-2013. The location is appropriately placed on the Wageningen University Campus, close to the students and research centres of the University. The new exposition space will provide new opportunities for serving different visitor groups. The selection of about 80 soil monoliths representing the world's soils will be maintained in the new exposition. In addition, interactive displays will support education. A circular, interactive map of the world will be placed centrally in the exposition and will serve as a portal to the soil information. The map data refer to the monoliths on the walls and vice versa. Around the central map six theme stations communicate current topics that show the relevance of soil in different fields. For the general public it will explain the principles of soil formation and it will show the relevance to actual issues like food production and climate change. High school students in their final years can come here for work assignments and orientation days. Academic students and scientists, from both the Netherlands and other (mainly) northern European countries can continue to come to the WSM for education, study and research.

Resource seeking strategies of zoosporic true fungi in heterogeneous soil habitats at the microscale level

PubMed Central

Gleason, Frank H.; Crawford, John W.; Neuhauser, Sigrid; Henderson, Linda E.; Lilje, Osu

2012-01-01

Zoosporic true fungi have frequently been identified in samples from soil and freshwater ecosystems using baiting and molecular techniques. In fact some species can be components of the dominant groups of microorganisms in particular soil habitats. Yet these microorganisms have not yet been directly observed growing in soil ecosystems. Significant physical characteristics and features of the three-dimensional structures of soils which impact microorganisms at the microscale level are discussed. A thorough knowledge of soil structures is important for studying the distribution of assemblages of these fungi and understanding their ecological roles along spatial and temporal gradients. A number of specific adaptations and resource seeking strategies possibly give these fungi advantages over other groups of microorganisms in soil ecosystems. These include chemotactic zoospores, mechanisms for adhesion to substrates, rhizoids which can penetrate substrates in small spaces, structures which are resistant to environmental extremes, rapid growth rates and simple nutritional requirements. These adaptations are discussed in the context of the characteristics of soils ecosystems. Recent advances in instrumentation have led to the development of new and more precise methods for studying microorganisms in three-dimensional space. New molecular techniques have made identification of microbes possible in environmental samples. PMID:22308003

Subsurface earthworm casts can be important soil microsites specifically influencing the growth of grassland plants.

PubMed

Zaller, Johann G; Wechselberger, Katharina F; Gorfer, Markus; Hann, Patrick; Frank, Thomas; Wanek, Wolfgang; Drapela, Thomas

Earthworms (Annelida: Oligochaeta) deposit several tons per hectare of casts enriched in nutrients and/or arbuscular mycorrhizal fungi (AMF) and create a spatial and temporal soil heterogeneity that can play a role in structuring plant communities. However, while we begin to understand the role of surface casts, it is still unclear to what extent plants utilize subsurface casts. We conducted a greenhouse experiment using large mesocosms (volume 45 l) to test whether (1) soil microsites consisting of earthworm casts with or without AMF (four Glomus taxa) affect the biomass production of 11 grassland plant species comprising the three functional groups grasses, forbs, and legumes, (2) different ecological groups of earthworms (soil dwellers- Aporrectodea caliginosa vs. vertical burrowers- Lumbricus terrestris ) alter potential influences of soil microsites (i.e., four earthworms × two subsurface microsites × two AMF treatments). Soil microsites were artificially inserted in a 25-cm depth, and afterwards, plant species were sown in a regular pattern; the experiment ran for 6 months. Our results show that minute amounts of subsurface casts (0.89 g kg -1 soil) decreased the shoot and root production of forbs and legumes, but not that of grasses. The presence of earthworms reduced root biomass of grasses only. Our data also suggest that subsurface casts provide microsites from which root AMF colonization can start. Ecological groups of earthworms did not differ in their effects on plant production or AMF distribution. Taken together, these findings suggest that subsurface earthworm casts might play a role in structuring plant communities by specifically affecting the growth of certain functional groups of plants.

HYSOGs250m, global gridded hydrologic soil groups for curve-number-based runoff modeling.

PubMed

Ross, C Wade; Prihodko, Lara; Anchang, Julius; Kumar, Sanath; Ji, Wenjie; Hanan, Niall P

2018-05-15

Hydrologic soil groups (HSGs) are a fundamental component of the USDA curve-number (CN) method for estimation of rainfall runoff; yet these data are not readily available in a format or spatial-resolution suitable for regional- and global-scale modeling applications. We developed a globally consistent, gridded dataset defining HSGs from soil texture, bedrock depth, and groundwater. The resulting data product-HYSOGs250m-represents runoff potential at 250 m spatial resolution. Our analysis indicates that the global distribution of soil is dominated by moderately high runoff potential, followed by moderately low, high, and low runoff potential. Low runoff potential, sandy soils are found primarily in parts of the Sahara and Arabian Deserts. High runoff potential soils occur predominantly within tropical and sub-tropical regions. No clear pattern could be discerned for moderately low runoff potential soils, as they occur in arid and humid environments and at both high and low elevations. Potential applications of this data include CN-based runoff modeling, flood risk assessment, and as a covariate for biogeographical analysis of vegetation distributions.

Using new hetero-spectral two-dimensional correlation analyses and synchrotron-radiation-based spectromicroscopy to characterize binding of Cu to soil dissolved organic matter.

PubMed

Sun, Fusheng; Li, Yaqing; Wang, Xiang; Chi, Zhilai; Yu, Guanghui

2017-04-01

Understanding the binding characteristics of copper (Cu) to different functional groups in soil dissolved organic matter (DOM) is important to explore Cu toxicity, bioavailability and ultimate fate in the environment. However, the methods used to explore such binding characteristics are still limited. Here, two-dimensional correlation spectroscopy (2DCOS) integrated with Fourier transform infrared (FTIR), 29 Si nuclear magnetic resonance (NMR), 27 Al NMR, and synchrotron-radiation-based FTIR spectromicroscopy were used to explore the binding characteristics of Cu to soil DOM as part of a long-term (23 years) fertilization experiment. Compared with no fertilization and inorganic fertilization (NPK), long-term pig manure fertilization (M) treatment significantly increased the concentration of total and bioavailable Cu in soils. Furthermore, hetero-spectral 2DCOS analyses demonstrated that the binding characteristics of Cu onto functional groups in soil DOM were modified by fertilization regimes. In the NPK treatment, Cu was bound to aliphatic C, whereas in the manure treatment SiO groups had higher affinity toward Cu than aliphatic C. Also, the sequence of binding of functional groups to Cu was modified by the fertilization treatments. Moreover, synchrotron-radiation-based FTIR spectromicroscopy showed that Cu, clay minerals and sesquioxides, and C functional groups were heterogeneously distributed at the micro-scale. Specifically, clay-OH as well as mineral elements had a distribution pattern similar to Cu, but certain (but not all) C forms showed a distribution pattern inconsistent with that of Cu. The combination of synchrotron radiation spectromicroscopy and 2DCOS is a useful tool in exploring the interactions among heavy metals, minerals and organic components in soils. Copyright © 2017 Elsevier Ltd. All rights reserved.

Soils and Vegetation of the Khaipudyr Bay Coast of the Barents Sea

NASA Astrophysics Data System (ADS)

Shamrikova, E. V.; Deneva, S. V.; Panyukov, A. N.; Kubik, O. S.

2018-04-01

Soils and vegetation of the coastal zone of the Khaipudyr Bay of the Barents Sea have been examined and compared with analogous objects in the Karelian coastal zone of the White Sea. The environmental conditions of these two areas are somewhat different: the climate of the Khaipudyr Bay coast is more severe, and the seawater salinity is higher (32-33‰ in the Khaipudyr Bay and 25-26‰ in the White Sea). The soil cover patterns of both regions are highly variable. Salt-affected marsh soils (Tidalic Fluvisols) are widespread. The complicated mesotopography includes high geomorphic positions that are not affected by tidal water. Under these conditions, zonal factors of pedogenesis predominate and lead to the development of Cryic Folic Histosols and Histic Reductaquic Cryosols. On low marshes, the concentrations of soluble Ca2+, K+ + Na+, Cl-, and SO2- 4 ions in the soils of the Khaipudyr Bay coast are two to four times higher than those in the analogous soils of Karelian coast. Cluster analysis of a number of soil characteristics allows separation of three soils groups: soils of low marshes, soils of middle-high marshes, and soils of higher positions developing under the impact of zonal factors together with the aerial transfer and deposition of seawater drops. The corresponding plant communities are represented by coastal sedge cenoses, forb-grassy halophytic cenoses, and zonal cenoses of hypoarctic tundra. It is argued that the grouping of marsh soils in the new substantivegenetic classification system of Russian soils requires further elaboration.

Distinct taxonomic and functional composition of soil microbiomes along the gradient forest-restinga-mangrove in southeastern Brazil.

PubMed

Mendes, Lucas William; Tsai, Siu Mui

2018-01-01

Soil microorganisms play crucial roles in ecosystem functioning, and the central goal in microbial ecology studies is to elucidate which factors shape community structure. A better understanding of the relationship between microbial diversity, functions and environmental parameters would increase our ability to set conservation priorities. Here, the bacterial and archaeal community structure in Atlantic Forest, restinga and mangrove soils was described and compared based on shotgun metagenomics. We hypothesized that each distinct site would harbor a distinct taxonomic and functional soil community, which is influenced by environmental parameters. Our data showed that the microbiome is shaped by soil properties, with pH, base saturation, boron and iron content significantly correlated to overall community structure. When data of specific phyla were correlated to specific soil properties, we demonstrated that parameters such as boron, copper, sulfur, potassium and aluminum presented significant correlation with the most number of bacterial groups. Mangrove soil was the most distinct site and presented the highest taxonomic and functional diversity in comparison with forest and restinga soils. From the total 34 microbial phyla identified, 14 were overrepresented in mangrove soils, including several archaeal groups. Mangrove soils hosted a high abundance of sequences related to replication, survival and adaptation; forest soils included high numbers of sequences related to the metabolism of nutrients and other composts; while restinga soils included abundant genes related to the metabolism of carbohydrates. Overall, our finds show that the microbial community structure and functional potential were clearly different across the environmental gradient, followed by functional adaptation and both were related to the soil properties.

Formulation of humic-based soil conditioners

NASA Astrophysics Data System (ADS)

Amanova, M. A.; Mamytova, G. A.; Mamytova, B. A.; Kydralieva, K. A.; Jorobekova, Sh. J.

2009-04-01

The goal of the study is to prepare soil conditioners (SC) able to carry out the following functions: (i) the chemical conditioning of soil mainly comprising the adjustment of pH, (ii) the balancing of inorganic nutrients, (iii) the physical conditioning of soil mainly comprising the improvement of water permeability, air permeability and water retention properties, and (iv) improvement of the ecological system concerning of useful microorganisms activity in the soil. The SC was made of a mixture of inorganic ingredients, a chemical composition and physical and chemical properties of which promoted improvement of physical characteristic of soil and enrichment by its mineral nutritious elements. In addition to aforesaid ingredients, this soil conditioner contains agronomical-valued groups of microorganisms having the function promoting the growth of the crop. As organic component of SC humic acids (HA) was used. HA serve many major functions that result in better soil and plant health. In soil, HA can increase microbial and mycorrhizal activity while enhancing nutrient uptake by plant roots. HA work as a catalyst by stimulating root and plant growth, it may enhance enzymatic activity that in turn accelerates cell division which can lead to increased yields. HA can help to increase crop yields, seed germination, and much more. In short, humic acids helps keep healthy plants health. The first stage goal was to evaluate mineral and organic ingredients for formulation of SC. Soil conditioners assessed included ash and slag. The use of slags has been largelly used in agriculture as a source of lime and phosphoric acid. The silicic acid of slags reduces Al-acitivity thus, promoting a better assimilation of P-fertilizer by plants. Additionally, silicic acid is also known to improve soil moisture capacity, thus enhancing soil water availability to plants. Physico-chemical characteristics of ash and slag were determined, as a total - about 20 samples. Results include: Chemical composition of (i) ash: 53-54% SiO2; 26-27% Al2O3; 3-5% Fe2O3; 1.7-2.9% CaO; 1.3-2.3% MgO; 0.5-0.8% Na2O; 1.0-1.5% K2O and; (ii), slag: 17-20% SiO2; 15-20% Al2O3; 30-40% CaO; 1-6% Fe2O3; 4-11% MgO. Of all samples assessed, per 5 samples from various regions with various compositions (high, average and low content of metal oxides) were selected and tested as component of SC in vegetative pot and field experiments, i.e., to study the immobilization processes including microorganisms and inorganic ingredients. This study helped to elucidate the influence of ash and slag composition on microbial development. The next stage was (i) to evaluate microbial activity of selected soils from Kyrgyzstan, (ii) to isolate microorganisms exhibiting antagonistic activity against pathogenic microorganisms present in the soil and, (iii) to utilize microbes as nutrient sources. Candidate microbial cultures were isolated from soils/crops and assessed as plant growth promoting microorganisms. The characteristics of the physiological groups of microorganisms were also investigated. Of different physiological groups of microorganisms selected, ca, 3 consortia of agronomical-valued microbial groups from undisturbed soils was selected as component of soil conditioners. Microorganisms, namely oligonitrophils, ammonifiers, nitrifiers, were tested based on beneficial bioactivity including plant biomass and stem length on commercial onion and lettuce crops. Our results demonstrate that all the combinations ash/slag, humic acids and consortium of beneficial agronomical-valued microbial groups into one environmentally friendly soil conditioner possessed equal or higher growth-promoting potential in relation to lettuce. However, our results demonstrated clearly that among studied scope of soil conditioners only one of them could be recommended for further study in terms of practical applications. Namely, it was mixture consisting of humic acids, ash and oligonitrophils as soil conditioning agent. Acknowledgement. This research was supported by the grant of ISTC KR-993.2.

Archaeal Community Changes Associated with Cultivation of Amazon Forest Soil with Oil Palm

PubMed Central

Tupinambá, Daiva Domenech; Cantão, Maurício Egídio; Costa, Ohana Yonara Assis; Bergmann, Jessica Carvalho; Kruger, Ricardo Henrique; Kyaw, Cynthia Maria; Barreto, Cristine Chaves; Quirino, Betania Ferraz

2016-01-01

This study compared soil archaeal communities of the Amazon forest with that of an adjacent area under oil palm cultivation by 16S ribosomal RNA gene pyrosequencing. Species richness and diversity were greater in native forest soil than in the oil palm-cultivated area, and 130 OTUs (13.7%) were shared between these areas. Among the classified sequences, Thaumarchaeota were predominant in the native forest, whereas Euryarchaeota were predominant in the oil palm-cultivated area. Archaeal species diversity was 1.7 times higher in the native forest soil, according to the Simpson diversity index, and the Chao1 index showed that richness was five times higher in the native forest soil. A phylogenetic tree of unclassified Thaumarchaeota sequences showed that most of the OTUs belong to Miscellaneous Crenarchaeotic Group. Several archaeal genera involved in nutrient cycling (e.g., methanogens and ammonia oxidizers) were identified in both areas, but significant differences were found in the relative abundances of Candidatus Nitrososphaera and unclassified Soil Crenarchaeotic Group (prevalent in the native forest) and Candidatus Nitrosotalea and unclassified Terrestrial Group (prevalent in the oil palm-cultivated area). More studies are needed to culture some of these Archaea in the laboratory so that their metabolism and physiology can be studied. PMID:27006640

Integrating 'omic' data and biogeochemical modeling: the key to understanding the microbial regulation of matter cycling in soil

NASA Astrophysics Data System (ADS)

Pagel, Holger; Kandeler, Ellen; Seifert, Jana; Camarinha-Silva, Amélia; Kügler, Philipp; Rennert, Thilo; Poll, Christian; Streck, Thilo

2016-04-01

Matter cycling in soils and associated soil functions are intrinsically controlled by microbial dynamics. It is therefore crucial to consider functional traits of microorganisms in biogeochemical models. Tremendous advances in 'omic' methods provide a plethora of data on physiology, metabolic capabilities and ecological life strategies of microorganisms in soil. Combined with isotopic techniques, biochemical pathways and transformations can be identified and quantified. Such data have been, however, rarely used to improve the mechanistic representation of microbial dynamics in soil organic matter models. It is the goal of the Young Investigator Group SoilReg to address this challenge. Our general approach is to tightly integrate experiments and biochemical modeling. NextGen sequencing will be applied to identify key functional groups. Active microbial groups will be quantified by measurements of functional genes and by stable isotope probing methods of DNA and proteins. Based on this information a biogeochemical model that couples a mechanistic representation of microbial dynamics with physicochemical processes will be set up and calibrated. Sensitivity and stability analyses of the model as well as scenario simulations will reveal the importance of intrinsic and extrinsic controls of organic matter turnover. We will demonstrate our concept and present first results of two case studies on pesticide degradation and methane oxidation.

Accumulation of organic C components in soil and aggregates

PubMed Central

Yu, Hongyan; Ding, Weixin; Chen, Zengming; Zhang, Huanjun; Luo, Jiafa; Bolan, Nanthi

2015-01-01

To explore soil organic carbon (SOC) accumulation mechanisms, the dynamics of C functional groups and macroaggregation were studied synchronously through aggregate fractionation and 13C NMR spectroscopy in sandy loam soil following an 18-year application of compost and fertilizer in China. Compared with no fertilizer control, both compost and fertilizer improved SOC content, while the application of compost increased macroaggregation. Fertilizer application mainly increased the levels of recalcitrant organic C components characterized by methoxyl/N-alkyl C and alkyl C, whereas compost application mainly promoted the accumulation of methoxyl/N-alkyl C, phenolic C, carboxyl C, O-alkyl C and di-O-alkyl C in bulk soil. The preferential accumulation of organic C functional groups in aggregates depended on aggregate size rather than nutrient amendments. These groups were characterized by phenolic C and di-O-alkyl C in the silt + clay fraction, carboxyl C in microaggregates and phenolic C, carboxyl C and methoxyl/N-alkyl C in macroaggregates. Thus, the differences in accumulated organic C components in compost- and fertilizer-amended soils were primarily attributable to macroaggregation. The accumulation of methoxyl/N-alkyl C in microaggregates effectively promoted macroaggregation. Our results suggest that organic amendment rich in methoxyl/N-alkyl C effectively improved SOC content and accelerated macroaggregation in the test soil. PMID:26358660

7 CFR 12.2 - Definitions.

Code of Federal Regulations, 2011 CFR

2011-01-01

... improvement in soil conditions on a field or group of fields containing highly erodible cropland when compared...: Agricultural commodity means any crop planted and produced by annual tilling of the soil, including tilling by... and implement soil and water conservation activities or programs. Conservation plan means the document...

7 CFR 12.2 - Definitions.

Code of Federal Regulations, 2010 CFR

2010-01-01

... improvement in soil conditions on a field or group of fields containing highly erodible cropland when compared...: Agricultural commodity means any crop planted and produced by annual tilling of the soil, including tilling by... and implement soil and water conservation activities or programs. Conservation plan means the document...

[Composition and Density of Soil Fauna in the Region with Enhanced Radioactivity Level (Komi Republic, Vodnyi)].

PubMed

Kolesnikova, A A; Kudrin, A A; Konakova, T N; Taskaeva, A A

2015-01-01

Studies on the influence of high levels of radiation on soil fauna were carried out in 2012 in the territory formed as a result of the activity of the enterprise for extraction and production of radium from reservoir water and waste of uranium ore from 1931 to 1956. At present the local radioactive pollution in this area is caused by the presence of heavy natural radionuclides 226Ra, 238U and products of their disintegration in soils. The oppression of soil invertebrate.fauna in pine forests and meadows with high levels of radionuclides and heavy metals is revealed. Also shown is the decrease in the number and density of different taxonomic groups of invertebrates, reduction of the diversity and spectrum of trophic groups and vital forms in the area with a high content of radionuclides in soil. Our results are in agreement with the results obtained by the similar studies showing negative influence of high-level ionizing radiation on soil fauna.

Changes in soil bacterial community structure with increasing disturbance frequency.

PubMed

Kim, Mincheol; Heo, Eunjung; Kang, Hojeong; Adams, Jonathan

2013-07-01

Little is known of the responsiveness of soil bacterial community structure to disturbance. In this study, we subjected a soil microcosm to physical disturbance, sterilizing 90 % of the soil volume each time, at a range of frequencies. We analysed the bacterial community structure using 454 pyrosequencing of the 16S rRNA gene. Bacterial diversity was found to decline with the increasing disturbance frequencies. Total bacterial abundance was, however, higher at intermediate and high disturbance frequencies, compared to low and no-disturbance treatments. Changing disturbance frequency also led to changes in community composition, with changes in overall species composition and some groups becoming abundant at the expense of others. Some phylogenetic groups were found to be relatively more disturbance-sensitive or tolerant than others. With increasing disturbance frequency, phylogenetic species variability (an index of community composition) itself became more variable from one sample to another, suggesting a greater role of chance in community composition. Compared to the tightly clustered community of the original undisturbed soil, in all the aged disturbed soils the lists of most abundant operational taxonomic units (OTUs) in each replicate were very different, suggesting a possible role of stochasticity in resource colonization and exploitation in the aged and disturbed soils. For example, colonization may be affected by whichever localized concentrations of bacterial populations happen to survive the last disturbance and be reincorporated in abundance into each pot. Overall, it appears that the soil bacterial community is very sensitive to physical disturbance, losing diversity, and that certain groups have identifiable 'high disturbance' vs. 'low disturbance' niches.

Status and effect of pesticide residues in soils under different land uses of Andaman Islands, India.

PubMed

Murugan, A V; Swarnam, T P; Gnanasambandan, S

2013-10-01

Pesticides are shown to have a great effect on soil organisms, but the effect varies with pesticide group and concentration, and is modified by soil organic carbon content and soil texture. In the humid tropical islands of Andaman, India, no systematic study was carried out on pesticide residues in soils of different land uses. The present study used the modified QuEChERS method for multiresidue extraction from soils and detection with a gas chromatograph. DDT and its various metabolites, α-endosulfan, β-endosulfan, endosulfan sulfate, aldrin, and fenvalerate, were detected from the study area. Among the different pesticide groups detected, endosulfan and DDT accounted for 41.7 % each followed by aldrin (16.7 %) and synthetic pyrethroid (8.3 %). A significantly higher concentration of pesticide residues was detected in rice-vegetable grown in the valley followed by rice-fallow and vegetable-fallow in the coastal plains. Soil microbial biomass carbon is negatively correlated with the total pesticide residues in soils, and it varied from 181.2 to 350.6 mg kg(-1). Pesticide residues have adversely affected the soil microbial populations, more significantly the bacterial population. The Azotobacter population has decreased to the extent of 51.8 % while actinomycetes were the least affected though accounted for 32 % when compared to the soils with no residue.

The Effect of Soil Education Project on Pre-School Children

ERIC Educational Resources Information Center

Gulay, Hulya; Yilmaz, Sevket; Gullac, Esin Turan; Onder, Alev

2010-01-01

The objective of this study is to evaluate the efficiency of the first two group applications of the project named "We are Learning about the Soil with Tipitop and His Friends" within the scope of the project group activities of The Scientific and Technological Research Council of Turkey (TUBITAK) "Schools of Nature and…

Retention of heavy metals by carboxyl functional groups of biochars in small arms range soil

USDA-ARS?s Scientific Manuscript database

Long-term effectiveness of biochar for heavy metal stabilization depends upon biochar’s sorptive property and recalcitrance in soil. To understand the role of carboxyl functional groups on heavy metal stabilization, cottonseed hull biochar and flax shive steam activated biochar having low O/C ratio...

Effects of different soil types in natural Mediterranean areas on soil organic carbon (SOC)

NASA Astrophysics Data System (ADS)

Requejo Silva, Ana; Lozano García, Beatriz; Parras Alcántara, Luis

2017-04-01

Effects of different soil types in natural Mediterranean areas on soil organic carbon (SOC) Ana Requejo1, Beatriz Lozano-García1, Luis Parras Alcántara1 1 Department of Agricultural Chemistry and Soil Science, Faculty of Science, Agrifood Campus of International Excellence - ceiA3, University of Córdoba, Spain. The carbon content of the atmosphere can be influenced by soils, since they can store carbon or emit large quantities of CO2. C sequestration into soils is one of the most important ecosystems services because of its role in climate regulation (IPPC, 2007). Thereof, agriculture and forestry are the only activities that can contribute to C sequestration through photosynthesis and its carbon incorporation into carbohydrates (Parras Alcántara et al., 2013). Dehesa is a multifunctional agro-sylvo-pastoral system and typical landscape of southern and central Spain and southern Portugal. It is an anthropogenic system dedicated to the combined production of black iberian pigs, a variety of foods, fuel, coal, and cork. Besides, it acts as well in the production of endangered species as wildlife habitat and as sustainable hunting areas. These dehesa areas are defined by a relationship between productivity and conservation of forest oaks, providing environmental benefits such as carbon capture and storage. The area focused in this study is the Cardeña-Montoro Nature Reserve, located within the Sierra Morena (Córdoba, South Spain). The most representative soils in Cardeña-Montoro Nature Reserve are Cambisols, Regosols, Leptosols and Fluvisols according to IUSS Working Group WRB (2006). They are characterized by a low fertility, poor physical conditions and marginal capacity for agricultural use, along with low organic matter content due to climate conditions (semiarid Mediterranean climate) and soil texture (sandy). Several studies have shown that land use affects the SOC concentration (Lozano-García et al., 2016; Khaledian et al., 2016). Based on this statement, the main goal of this work consists in establishing the vertical distribution in the profile of SOC and N concentrations and to quantify the SOC and N stocks affected by different soil types in a natural Mediterranean area, under the same land use (agroforestry system) and management (conventional tillage). This will allow to evaluate the soil quality. It was verified that SOC concentrations significantly decreased with depth in the majority of soil profiles for all soil groups under consideration. Leptosols are characterized by the highest concentration of soil organic carbon in the subsurface horizons as opposed to Cambisols which are defined by the lowest SOC concentration in depth. The SOC stock determined in the studied soil groups are 110. Mg. ha-1 for Fluvisols and 78.35 Mg.ha-1 for Regosols that can be caused by soil thickness. According to McLauchlan (2006), it cannot be found a strong relationship between clay content and organic carbon in the soil groups under study. REFERENCES IPPC: Climate Change 2007: the physical science basis, Cambridge University Press: Cambridge/New York, NY, 2007. IUSS Working Group WRB, 2006. World Reference base for soil resources 2006. World Soil Resources Report N° 103. FAO, Rome. Khaledian, Y., Kiani, F., Ebrahimi, S., Brevik, E.C., Aitkenhead-Peterson, J., 2016. Assessment and monitoring of soil degradation during land use change using multivariate analysis. Land Degrad. Dev. Doi: http:// dx.doi.org/10.1002/ldr.2541. Lozano-García, B., Parras-Alcántara, L., Cantudo-Pérez, M., 2016. Land use change effects on stratification and storage of soil carbon and nitrogen: Application to a Mediterranean nature reserve. Agriculture, Ecosystems and Environment, 231, 105-113. McLauchlan, K.K., 2006. Effect of soil texture on soil carbon and nitrogen dynamic after cessation of agriculture. Geoderma 136, 289-299. Parras-Alcántara, L., Martín-Carrillo, M. and Lozano-García, B. Impacts of land use change in soil carbon and nitrogen in a Mediterranean agricultural area (Southern Spain). Solid Earth 4, 167-177.

Ion microprobe analyses of aluminous lunar glasses - A test of the 'rock type' hypothesis

NASA Technical Reports Server (NTRS)

Meyer, C., Jr.

1978-01-01

Previous soil survey investigations found that there are natural groupings of glass compositions in lunar soils and that the average major element composition of some of these groupings is the same at widely separated lunar landing sites. This led soil survey enthusiasts to promote the hypothesis that the average composition of glass groupings represents the composition of primary lunar 'rock types'. In this investigation the trace element composition of numerous aluminous glass particles was determined by the ion microprobe method as a test of the above mentioned 'rock type' hypothesis. It was found that within any grouping of aluminous lunar glasses by major element content, there is considerable scatter in the refractory trace element content. In addition, aluminous glasses grouped by major elements were found to have different average trace element contents at different sites (Apollo 15, 16 and Luna 20). This evidence argues that natural groupings in glass compositions are determined by regolith processes and may not represent the composition of primary lunar 'rock types'.

Combining position-specific 13C labeling with compound-specific isotope analysis: first steps towards soil fluxomics

NASA Astrophysics Data System (ADS)

Dippold, Michaela; Kuzyakov, Yakov

2015-04-01

Understanding the soil organic matter (SOM) dynamics is one of the most important challenges in soil science. Transformation of low molecular weight organic substances (LMWOS) is a key step in biogeochemical cycles because 1) all high molecular substances pass this stage during their decomposition and 2) only LMWOS will be taken up by microorganisms. Previous studies on LMWOS were focused on determining net fluxes through the LMWOS pool, but they rarely identified transformations. As LMWOS are the preferred C and energy source for microorganisms, the transformations of LMWOS are dominated by biochemical pathways of the soil microorganisms. Thus, understanding fluxes and transformations in soils requires a detailed knowledge on the biochemical pathways and its controlling factors. Tracing C fate in soil by isotopes became on of the most applied and promising biogeochemistry tools. Up to now, studies on LMWOS were nearly exclusively based on uniformly labeled organic substances i.e. all C atoms in the molecules were labeled with 13C or 14C. However, this classical approach did not allow the differentiation between use of intact initial substances in any process, or whether they were transformed to metabolites. The novel tool of position-specific labeling enables to trace molecule atoms separately and thus to determine the cleavage of molecules - a prerequisite for metabolic tracing. Position-specific labeling of LMWOS and quantification of 13CO2 and 13C in bulk soil enabled following the basic metabolic pathways of soil microorganisms. However, only the combination of position-specific 13C labeling with compound-specific isotope analysis of microbial biomarkers and metabolites allowed 1) tracing specific anabolic pathways in diverse microbial communities in soils and 2) identification of specific pathways of individual functional microbial groups. So, these are the prerequisites for soil fluxomics. Our studies combining position-specific labeled glucose with amino sugar 13C analysis showed that oxidizing catabolic pathways and anabolic pathways, i.e. building-up new cellular compounds, occurred in soils simultaneously. This involved an intensive C recycling within the microorganisms that was observed not only for cytosolic compounds but also for cell wall polymers. Fungal metabolism and fluxes were slower than bacterial intracellular C recycling and turnover. Furthermore, position-specific labeling of glutamate and subsequent 13C analysis of microbial phospholipid fatty acids (PLFA) revealed starvation pathways, which were only active in specific microbial groups in soils. These studies revealed that position-specific labeling enables the reconstruction of metabolic pathways of LMWOS within diverse microbial communities in complex media such as soil. Processes occurring simultaneously in soil i.e. 1) within individual, reversible metabolic pathways and 2) in various microbial groups could be traced by position-specific labeling in soils in situ. Tracing these pathways and understanding their regulating factors are crucial for soil C fluxomics, the extremely complex network of transformations towards mineralization versus the formation of microbial biomass compounds. Quantitative models to assess microbial group specific metabolic networks can be generated and parameterized by this approach. The submolecular knowledge of transformation steps and biochemical pathways in soils and their regulating factors is essential for understanding C cycling and long-term C storage in soils.

Universal solution for the characteristic time and the degree of settlement in nonlinear soil consolidation scenarios. A deduction based on nondimensionalization

NASA Astrophysics Data System (ADS)

Alhama Manteca, Iván; García-Ros, Gonzalo; Alhama López, Francisco

2018-04-01

Using the mathematical-physical process of nondimensionalization of governing equations, the problem of nonlinear soil consolidation based on the Cornetti and Battaglio model removing some of the restrictive hypotheses assumed by these authors is studied for the search of the dimensionless groups that govern the characteristic time and the average degree of settlement. The derived groups, once verified by numerical simulations, allow the universal representation of the aforementioned unknowns for the wide range of properties of real soils.

Dynamics of indigenous bacterial communities associated with crude oil degradation in soil microcosms during nutrient-enhanced bioremediation.

PubMed

Chikere, Chioma B; Surridge, Karen; Okpokwasili, Gideon C; Cloete, Thomas E

2012-03-01

Bacterial population dynamics were examined during bioremediation of an African soil contaminated with Arabian light crude oil and nutrient enrichment (biostimulation). Polymerase chain reaction followed by denaturing gradient gel electrophoresis (DGGE) were used to generate bacterial community fingerprints of the different treatments employing the 16S ribosomal ribonucleic acid (rRNA) gene as molecular marker. The DGGE patterns of the nutrient-amended soils indicated the presence of distinguishable bands corresponding to the oil-contaminated-nutrient-enriched soils, which were not present in the oil-contaminated and pristine control soils. Further characterization of the dominant DGGE bands after excision, reamplification and sequencing revealed that Corynebacterium spp., Dietzia spp., Rhodococcus erythropolis sp., Nocardioides sp., Low G+C (guanine plus cytosine) Gram positive bacterial clones and several uncultured bacterial clones were the dominant bacterial groups after biostimulation. Prominent Corynebacterium sp. IC10 sequence was detected across all nutrient-amended soils but not in oil-contaminated control soil. Total heterotrophic and hydrocarbon utilizing bacterial counts increased significantly in the nutrient-amended soils 2 weeks post contamination whereas oil-contaminated and pristine control soils remained fairly stable throughout the experimental period. Gas chromatographic analysis of residual hydrocarbons in biostimulated soils showed marked attenuation of contaminants starting from the second to the sixth week after contamination whereas no significant reduction in hydrocarbon peaks were seen in the oil-contaminated control soil throughout the 6-week experimental period. Results obtained indicated that nutrient amendment of oil-contaminated soil selected and enriched the bacterial communities mainly of the Actinobacteria phylogenetic group capable of surviving in toxic contamination with concomitant biodegradation of the hydrocarbons. The present study therefore demonstrated that the soil investigated harbours hydrocarbon-degrading bacterial populations which can be biostimulated to achieve effective bioremediation of oil-contaminated soil.

Ambient soil cation exchange capacity inversely associates with infectious and parasitic disease risk in regional Australia.

PubMed

Liddicoat, Craig; Bi, Peng; Waycott, Michelle; Glover, John; Breed, Martin; Weinstein, Philip

2018-06-01

Human contact with soil may be important for building and maintaining normal healthy immune defence mechanisms, however this idea remains untested at the population-level. In this continent-wide, cross-sectional study we examine the possible public health benefit of ambient exposures to soil of high cation exchange capacity (CEC), a surrogate for potential immunomodulatory soil microbial diversity. We compare distributions of normalized mean 2011/12-2012/13 age-standardized public hospital admission rates (cumulative incidence) for infectious and parasitic diseases across regional Australia (representing an average of 29,516 patients/year in 228 local government areas), within tertiles of socioeconomic status and soil exposure. To test the significance of soil CEC, we use probabilistic individual-level environmental exposure data (with or without soil), and group-level variables, in robust non-parametric multilevel modelling to predict disease rates in unseen groups. Our results show that in socioeconomically-deprived areas with high CEC soils, rates of infectious and parasitic disease are significantly lower than areas with low CEC soils. Also, health inequality (relative risk) due to socioeconomic status is significantly lower in areas with high CEC soils compared to low CEC soils (Δ relative risk = 0.47; 95% CI: 0.13, 0.82). Including soil exposure when modelling rates of infectious and parasitic disease significantly improves prediction performance, explaining an additional 7.5% (Δ r 2  = 0.075; 95% CI: 0.05, 0.10) of variation in disease risk, in local government areas that were not used for model building. Our findings suggest that exposure to high CEC soils (typically high soil biodiversity) associates with reduced risk of infectious and parasitic diseases, particularly in lower socioeconomic areas. Copyright © 2018 Elsevier B.V. All rights reserved.

Autoclaving as a mean of modifying the soil wettability characteristics

NASA Astrophysics Data System (ADS)

Urbanek, Emilia; Bodi, Merche; Shakesby, Rick; Doerr, Stefan

2010-05-01

Studies of soil water repellency have often attempted to isolate its hydrological impact by comparing responses of wettable and water repellent soils. It is, however, almost impossible to identify natural wettable and water repellent soils that are otherwise fully comparable. Furthermore no established methodology exists that allows changing a soil from wettable to water repellent (or vice versa) without affecting its chemical composition. Approaches used for rendering wettable soil (or sands) water repellent involve coating particles with hydrophobic or commercial water repellent spray. Heating soil to temperatures >300 °C has been used to eliminate existing water repellency from samples, but this can permanently alter the composition of organic matter. Here we report on a new technique for rendering wettable soil water repellent involving autoclaving. Autoclaving is commonly applied in medicine and biology for sterilization. It uses moist heat and pressure to destroy the bacteria, viruses and fungi. The same method has also been used in soil ecology studies for selective removal of certain micro-organisms. In our study, soils at various moisture contents were autoclaved in sealed bags for 1hr at 121°C. The soils became water repellent and the degree of water repellency was found to be dependent on the original soil moisture content and the soil wettability remained unchanged even with further drying of the soil up to 105°C. No changes in soil wettability were found after autoclaving very dry or wet soils. Only at certain intermediate water contents was the soil able to switch to a hydrophobic state. We suspect that the changes occurring during the autoclaving involve molecular orientation of hydrophobic and hydrophilic groups of soil organic matter, and moist heat and pressure cause the hydrophobic groups to be directed towards the outside of the soil particles which consequently repels water. Treatment of soil in this way presents a simple, inexpensive method of making a soil hydrophobic without changing its chemical composition. This has considerable potential for controlled experiments requiring both soils that differ only in terms of their degree of hydrophobicity.

Environmental Controls of Soil Organic Carbon in Soils Across Amazonia

NASA Astrophysics Data System (ADS)

Quesada, Carlos Alberto; Paz, Claudia; Phillips, Oliver; Nonato Araujo Filho, Raimundo; Lloyd, Jon

2015-04-01

Amazonian forests store and cycle a significant amount of carbon on its soils and vegetation. Yet, Amazonian forests are now subject to strong environmental pressure from both land use and climate change. Some of the more dramatic model projections for the future of the Amazon predict a major change in precipitation followed by savanization of most currently forested areas, resulting in major carbon losses to the atmosphere. However, how soil carbon stocks will respond to climatic and land use changes depend largely on how soil carbon is stabilized. Amazonian soils are highly diverse, being very variable in their weathering levels and chemical and physical properties, and thus it is important to consider how the different soils of the Basin stabilize and store soil organic carbon (SOC). The wide variation in soil weathering levels present in Amazonia, suggests that soil groups with contrasting pedogenetic development should differ in their predominant mechanism of SOC stabilization. In this study we investigated the edaphic, mineralogical and climatic controls of SOC concentration in 147 pristine forest soils across nine different countries in Amazonia, encompassing 14 different WRB soil groups. Soil samples were collected in 1 ha permanent plots used for forest dynamics studies as part of the RAINFOR project. Only 0-30 cm deep averages are reported here. Soil samples were analyzed for carbon and nitrogen and for their chemical (exchangeable bases, phosphorus, pH) and physical properties, (particle size, bulk density) and mineralogy through standard selective dissolution techniques (Fe and Al oxides) and by semi-quantitative X-Ray diffraction. In Addition, selected soils from each soil group had SOC fractionated by physical and chemical techniques. Our results indicate that different stabilization mechanisms are responsible for SOC stabilization in Amazonian soils with contrasting pedogenetic level. Ferralsols and Acrisols were found to have uniform mineralogy (kaolinitic) and thus the clay plus silt fraction was the best correlate for SOC but with crystalline iron oxides (dithionite-citrate minus ammonium oxalate - oxalic acid extractable iron) being also correlated to SOC in these soils (R2 = 0.74). Most of SOC in these soils was found on the clay+silt fraction and in stable, clay rich aggregates. However, SOC of high activity clays and other less weathered soils such as Alisols, Cambisols and Plinthosols showed no correlation with particle size or iron oxides, being mostly stabilized by aluminium complexes. We found SOC of these soils to be better explained by a three way interaction among soil pH, carbon quality and dithionite-citrate extractable Al (R2 = 0.85). Consistent with this observation, SOC in the less weathered soils was mostly found in the colloidal fraction (75%). SOC of Podzols and Arenosols on the other hand had only a small but significant influence from their clay plus silt fraction (R2 = 0.31), with particulate organic matter accounting for most of its SOC.

[Effect of long-term fertilizing regime on soil microbial diversity and soil property].

PubMed

Li, Chenhua; Zhang, Caixia; Tang, Lisong; Xiong, Zhengqin; Wang, Baozhan; Jia, Zhongjun; Li, Yan

2014-03-04

To evaluate the effect of long-term fertilization on soil microbial community and soil chemical and physical properties. Using a high-throughput pyrosequencing technique, we studied microbial community in the 0-300 cm soil samples covering a 20-year field-experiment with different fertilization applications including inorganic fertilizer alone (N 300 kg/hm2, P2O5 150 kg/hm2 and K2O 60 kg/hm2) and inorganic fertilizer combined with straw (same application rate of N and P fertilizer combined with 5.4 t straw). Actinobacteria and alpha-proteobacteria were the predominant groups in the topsoil (0-20 cm). As the soil depth increased, the relative abundance of actinobacteria decreased whereas that of proteobacteria, especially gamma-proteobacteria and beta-proteobacteria increased and gradually became the dominant groups in the subsoil (20-300 cm). Long-term fertilizing applications significantly affected soil microbial communities throughout the soil profile, and increased the relative abundance of ammonia-oxidizing archaea at 0-40 cm depth. In addition, agriculture management, e. g. irrigation may be an important driving factor for the distribution of ammonia-oxidizing bacteria in soil profile. Total nitrogen and organic carbon contents were the most influential factors on microbial community in the topsoil and in the subsoil, respectively. Long-term fertilizer applications altered soil nutrient availability within the soil profile, which was likely to result in the different microbial community structure between the fertilizer treatments, especially for the subsoil.

Upscaling with data assimilation in soil hydrology

USDA-ARS?s Scientific Manuscript database

Most of measurements in soil hydrology are point-based, and methods are needed to use the point-based data for estimating soil water contents at larger societally-important scales, such as field, hillslope or watershed. One group of appropriate methods involves data assimilation which is a methodolo...

POTENTIAL REUSE OF PETROLEUM-CONTAMINATED SOIL: A DIRECTOR OF PERMITTED RECYCLING FACILITIES

EPA Science Inventory

Soil contaminated by virgin petroleum products leaking from underground storage tanks is a pervasive problem In the United States. conomically feasible disposal of such soil concerns the responsible party (RP), whether the RP Ia one individual small business owner a group of owne...

POTENTIAL REUSE OF PETROLEUM-CONTAMINATED SOIL: A DIRECTORY OF PERMITTED RECYCLING FACILITIES

EPA Science Inventory

Soil contaminated by virgin petroleum products leaking from underground storage tanks Is a pervasive problem in the United States. Economically feasible disposal of such soil concerns the responsible party (RP), whether the RP is one individual small business owner, a group o...

Effects of biotic and abiotic indices on long term soil moisture data in a grassland biodiversity experiment

NASA Astrophysics Data System (ADS)

Fischer, Christine; Hohenbrink, Tobias; Leimer, Sophia; Roscher, Christiane; Ravenek, Janneke; de Kroon, Hans; Kreutziger, Yvonne; Wirth, Christian; Eisenhauer, Nico; Gleixner, Gerd; Weigelt, Alexandra; Mommer, Liesje; Beßler, Holger; Schröder, Boris; Hildebrandt, Anke

2015-04-01

Soil moisture is the dynamic link between climate, soil and vegetation and the dynamics and variation are affected by several often interrelated factors such as soil texture, soil structural parameters (soil organic carbon) and vegetation parameters (belowground- and aboveground biomass). For the characterization and estimation of soil moisture and its variability and the resulting water fluxes and solute transports, the knowledge of the relative importance of these factors is of major challenge for hydrology and bioclimatology. Because of the heterogeneity of these factors, soil moisture varies strongly over time and space. Our objective was to assess the spatio-temporal variability of soil moisture and factors which could explain that variability, like soil properties and vegetation cover, in in a long term biodiversity experiment (Jena Experiment). The Jena Experiment consist 86 plots on which plant species richness (0, 1, 2, 4, 8, 16, and 60) and functional groups (legumes, grasses, tall herbs, and small herbs) were manipulated in a factorial design Soil moisture measurements were performed weekly April to September 2003-2005 and 2008-2013 using Delta T theta probe. Measurements were integrated to three depth intervals: 0.0 - 0.20, 0.20 - 0.40 and 0.40 - 0.70 m. We analyze the spatio-temporal patterns of soil water content on (i) the normalized time series and (ii) the first components obtained from a principal component analysis (PCA). Both were correlated with the design variables of the Jena Experiment (plant species richness and plant functional groups) and other influencing factors such as soil texture, soil structural variables and vegetation parameters. For the time stability of soil water content, the analysis showed that plots containing grasses was consistently drier than average at the soil surface in all observed years while plots containing legumes comparatively moister, but only up to the year 2008. In 0.40 - 0.70 m soil deep plots presence of small herbs led to higher than average soil moisture in some years (2008, 2012, 2013). Interestingly, plant species richness led to moister than average subsoil at the beginning of the experiment (2003 and 2004), which changed to lower than average up to the year 2010 in all depths. There was no effect of species diversity in the years since 2010, although species diversity generally increases leaf area index and aboveground biomass. The first component from the PCA analysis described the mean behavior in time of all soil moisture time series. The second component reflected the impact of soil depth. The first two components explained 76% of the data set total variance. The third component is linked to plant species richness and explained about 4 % of the total variance of soil moisture data. The fourth component, which explained 2.4 %, showed a high correlation to soil texture. Within this study we investigate the dominant factors controlling spatio-temporal patterns of soil moisture at several soil depths. Although climate and soil depths were the most important drivers, other factors like plant species richness and soil texture affected the temporal variation while certain plant functional groups were important for the spatial variability.

Effect of Metal Oxide Nanoparticles on Microbial Community Structure and Function in Two Different Soil Types

PubMed Central

Frenk, Sammy; Ben-Moshe, Tal; Dror, Ishai; Berkowitz, Brian; Minz, Dror

2013-01-01

Increased availability of nanoparticle-based products will, inevitably, expose the environment to these materials. Engineered nanoparticles (ENPs) may thus find their way into the soil environment via wastewater, dumpsters and other anthropogenic sources; metallic oxide nanoparticles comprise one group of ENPs that could potentially be hazardous for the environment. Because the soil bacterial community is a major service provider for the ecosystem and humankind, it is critical to study the effects of ENP exposure on soil bacteria. These effects were evaluated by measuring bacterial community activity, composition and size following exposure to copper oxide (CuO) and magnetite (Fe3O4) nanosized (<50 nm) particles. Two different soil types were examined: a sandy loam (Bet-Dagan) and a sandy clay loam (Yatir), under two ENP concentrations (1%, 0.1%). Results indicate that the bacterial community in Bet-Dagan soil was more susceptible to change due to exposure to these ENPs, relative to Yatir soil. More specifically, CuO had a strong effect on bacterial hydrolytic activity, oxidative potential, community composition and size in Bet-Dagan soil. Few effects were noted in the Yatir soil, although 1% CuO exposure did cause a significant decreased oxidative potential and changes to community composition. Fe3O4 changed the hydrolytic activity and bacterial community composition in Bet-Dagan soil but did not affect the Yatir soil bacterial community. Furthermore, in Bet-Dagan soil, abundance of bacteria annotated to OTUs from the Bacilli class decreased after addition of 0.1% CuO but increased with 1% CuO, while in Yatir soil their abundance was reduced with 1% CuO. Other important soil bacterial groups, including Rhizobiales and Sphingobacteriaceae, were negatively affected by CuO addition to soil. These results indicate that both ENPs are potentially harmful to soil environments. Furthermore, it is suggested that the clay fraction and organic matter in different soils interact with the ENPs and reduce their toxicity. PMID:24349575

Soil heavy metal contamination related to roasted stone coal slag: a study based on geostatistical and multivariate analyses.

PubMed

Li, De'an; Jiang, Jianguo; Li, Tianran; Wang, Jiaming

2016-07-01

Soil was examined for vanadium (V) and related metal contamination near a stone coal mine in Hubei Province, China. In total, 92 surface and vertical (0-200 cm) soil samples were collected from the site. A handheld X-ray fluorescence spectrometer was used for in situ analysis of the soil concentrations of heavy metals, including V, chromium (Cr), copper (Cu), manganese (Mn), zinc (Zn), and lead (Pb). The mean concentrations of these metals were 931, 721, 279, 223, 163, and 11 mg/kg, respectively. Based on the Chinese Environmental Quality Standard for Soils guidelines, up to 88.0, 76.1, and 56.5 % of the soil samples had single factor pollution indices >3 for V, Cr, and Cu, respectively. Furthermore, 2.2 % of samples were slightly polluted with Zn, while there was no Mn or Pb contamination. GaussAmp curve fitting was performed based on the sample frequency distribution of the Nemerow pollution index. The fitted mean was 5.99, indicating severe pollution. The heavy metals were clustered into two groups, V/Cr/Cu/Zn and Mn/Pb, based on the spatial distributions, the Pearson correlation and principal component analyses. The positive correlations within the V/Cr/Cu/Zn group suggested that they originated from roasted stone coal slag. Finally, the negative correlation between the two groups was attributed to mechanical mixing of the slag and original soil.

Ammonia oxidation-dependent growth of group I.1b Thaumarchaeota in acidic red soil microcosms.

PubMed

Wu, Yucheng; Conrad, Ralf

2014-07-01

Accumulating evidence suggests that Thaumarchaeota may control nitrification in acidic soils. However, the composition of the thaumarchaeotal communities and their functioning is not well known. Therefore, we studied nitrification activity in relation to abundance and composition of Thaumarchaeota in an acidic red soil from China, using microcosms incubated with and without cellulose amendment. Cellulose was selected to simulate the input of crop residues used to increase soil fertility by local farming. Accumulation of NO3-(-N) was correlated with the growth of Thaumarchaeota as determined by qPCR of 16S rRNA and ammonia monooxygenase (amoA) genes. Both nitrification activity and thaumarchaeotal growth were inhibited by acetylene. They were also inhibited by cellulose amendment, possibly due to the depletion of ammonium by enhanced heterotrophic assimilation. These results indicated that growth of Thaumarchaeota was dependent on ammonia oxidation. The thaumarchaeotal 16S rRNA gene sequences in the red soil were dominated by a clade related to soil fosmid clone 29i4 within the group I.1b, which is widely distributed but so far uncultured. The archaeal amoA sequences were mainly related to the Nitrososphaera sister cluster. These observations suggest that fosmid clone 29i4 and Nitrososphaera sister cluster represent the same group of Thaumarchaeota and dominate ammonia oxidation in acidic red soil. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Regulation of C:N:P stoichiometry of microbes and soil organic matter by optimizing enzyme allocation: an omics-informed model study

NASA Astrophysics Data System (ADS)

Song, Y.; Yao, Q.; Wang, G.; Yang, X.; Mayes, M. A.

2017-12-01

Increasing evidences is indicating that soil organic matter (SOM) decomposition and stabilization process is a continuum process and controlled by both microbial functions and their interaction with minerals (known as the microbial efficiency-matrix stabilization theory (MEMS)). Our metagenomics analysis of soil samples from both P-deficit and P-fertilization sites in Panama has demonstrated that community-level enzyme functions could adapt to maximize the acquisition of limiting nutrients and minimize energy demand for foraging (known as the optimal foraging theory). This optimization scheme can mitigate the imbalance of C/P ratio between soil substrate and microbial community and relieve the P limitation on microbial carbon use efficiency over the time. Dynamic allocation of multiple enzyme groups and their interaction with microbial/substrate stoichiometry has rarely been considered in biogeochemical models due to the difficulties in identifying microbial functional groups and quantifying the change in enzyme expression in response to soil nutrient availability. This study aims to represent the omics-informed optimal foraging theory in the Continuum Microbial ENzyme Decomposition model (CoMEND), which was developed to represent the continuum SOM decomposition process following the MEMS theory. The SOM pools in the model are classified based on soil chemical composition (i.e. Carbohydrates, lignin, N-rich SOM and P-rich SOM) and the degree of SOM depolymerization. The enzyme functional groups for decomposition of each SOM pool and N/P mineralization are identified by the relative composition of gene copy numbers. The responses of microbial activities and SOM decomposition to nutrient availability are simulated by optimizing the allocation of enzyme functional groups following the optimal foraging theory. The modeled dynamic enzyme allocation in response to P availability is evaluated by the metagenomics data measured from P addition and P-deficit soil samples in Panama sites.The implementation of dynamic enzyme allocation in response to nutrient availability in the CoMEND model enables us to capture the varying microbial C/P ratio and soil carbon dynamics in response to shifting nutrient constraints over time in tropical soils.

Rainfall simulation in education

NASA Astrophysics Data System (ADS)

Peters, Piet; Baartman, Jantiene; Gooren, Harm; Keesstra, Saskia

2016-04-01

Rainfall simulation has become an important method for the assessment of soil erosion and soil hydrological processes. For students, rainfall simulation offers an year-round, attractive and active way of experiencing water erosion, while not being dependent on (outdoors) weather conditions. Moreover, using rainfall simulation devices, they can play around with different conditions, including rainfall duration, intensity, soil type, soil cover, soil and water conservation measures, etc. and evaluate their effect on erosion and sediment transport. Rainfall simulators differ in design and scale. At Wageningen University, both BSc and MSc student of the curriculum 'International Land and Water Management' work with different types of rainfall simulation devices in three courses: - A mini rainfall simulator (0.0625m2) is used in the BSc level course 'Introduction to Land Degradation and Remediation'. Groups of students take the mini rainfall simulator with them to a nearby field location and test it for different soil types, varying from clay to more sandy, slope angles and vegetation or litter cover. The groups decide among themselves which factors they want to test and they compare their results and discuss advantage and disadvantage of the mini-rainfall simulator. - A medium sized rainfall simulator (0.238 m2) is used in the MSc level course 'Sustainable Land and Water Management', which is a field practical in Eastern Spain. In this course, a group of students has to develop their own research project and design their field measurement campaign using the transportable rainfall simulator. - Wageningen University has its own large rainfall simulation laboratory, in which a 15 m2 rainfall simulation facility is available for research. In the BSc level course 'Land and Water Engineering' Student groups will build slopes in the rainfall simulator in specially prepared containers. Aim is to experience the behaviour of different soil types or slope angles when (heavy) rain occurs. The MSc level course 'Fundamentals of Land Management' students carry out a hands-on practical in which they compare soil type and design and evaluate the effect of soil and water conservation measures. Also, MSc thesis research is being carried out using this facility. For instance, the distribution and movement of pesticide Glyphosate with sediment transportation was being quantified using the rainfall simulation facility.

Phytoremediation of Cadmium by Native Plants Grown on Mining Soil.

PubMed

Palutoglu, Mahmut; Akgul, Bunyamin; Suyarko, Vasily; Yakovenko, Myroslava; Kryuchenko, Nataliya; Sasmaz, Ahmet

2018-02-01

The Gümüsköy mining area is located about 25 km west of Kutahya and is the largest silver deposit in Turkey. The present study investigated translocation and accumulation of cadmium (Cd) from the soil into 11 native plants. Plant and soil samples were collected from the field, and Cd concentrations were analyzed by inductively coupled plasma mass spectroscopy. Mean Cd values in the soil, root, and shoot of native plants in the study area were 82.8 ± 5, 55.4 ± 6, and 43.5 ± 4 mg kg - 1 , respectively. Plants were separated into several groups according to the enrichment coefficients for shoot and root values of plants. These groups showed Carduus nutans and Phlomis could be potentially bioaccumulator plants useful for phytoremediation of mining soils contaminated by Cd.

Differences in the Activities of Eight Enzymes from Ten Soil Fungi and Their Possible Influences on the Surface Structure, Functional Groups, and Element Composition of Soil Colloids

PubMed Central

Wang, Wenjie; Li, Yanhong; Wang, Huimei; Zu, Yuangang

2014-01-01

How soil fungi function in soil carbon and nutrient cycling is not well understood by using fungal enzymatic differences and their interactions with soil colloids. Eight extracellular enzymes, EEAs (chitinase, carboxymethyl cellulase, β-glucosidase, protease, acid phosphatase, polyphenol oxidase, laccase, and guaiacol oxidase) secreted by ten fungi were compared, and then the fungi that showed low and high enzymatic activity were co-cultured with soil colloids for the purpose of finding fungi-soil interactions. Some fungi (Gomphidius rutilus, Russula integra, Pholiota adiposa, and Geastrum mammosum) secreted 3–4 enzymes with weak activities, while others (Cyathus striatus, Suillus granulate, Phallus impudicus, Collybia dryophila, Agaricus sylvicola, and Lactarius deliciosus) could secret over 5 enzymes with high activities. The differences in these fungi contributed to the alterations of functional groups (stretching bands of O-H, N-H, C-H, C = O, COO- decreased by 11–60%, while P = O, C-O stretching, O-H bending and Si-O-Si stretching increased 9–22%), surface appearance (disappearance of adhesive organic materials), and elemental compositions (11–49% decreases in C1s) in soil colloids. Moreover, more evident changes were generally in high enzymatic fungi (C. striatus) compared with low enzymatic fungi (G. rutilus). Our findings indicate that inter-fungi differences in EEA types and activities might be responsible for physical and chemical changes in soil colloids (the most active component of soil matrix), highlighting the important roles of soil fungi in soil nutrient cycling and functional maintenance. PMID:25398013

Differences in the activities of eight enzymes from ten soil fungi and their possible influences on the surface structure, functional groups, and element composition of soil colloids.

PubMed

Wang, Wenjie; Li, Yanhong; Wang, Huimei; Zu, Yuangang

2014-01-01

How soil fungi function in soil carbon and nutrient cycling is not well understood by using fungal enzymatic differences and their interactions with soil colloids. Eight extracellular enzymes, EEAs (chitinase, carboxymethyl cellulase, β-glucosidase, protease, acid phosphatase, polyphenol oxidase, laccase, and guaiacol oxidase) secreted by ten fungi were compared, and then the fungi that showed low and high enzymatic activity were co-cultured with soil colloids for the purpose of finding fungi-soil interactions. Some fungi (Gomphidius rutilus, Russula integra, Pholiota adiposa, and Geastrum mammosum) secreted 3-4 enzymes with weak activities, while others (Cyathus striatus, Suillus granulate, Phallus impudicus, Collybia dryophila, Agaricus sylvicola, and Lactarius deliciosus) could secret over 5 enzymes with high activities. The differences in these fungi contributed to the alterations of functional groups (stretching bands of O-H, N-H, C-H, C = O, COO- decreased by 11-60%, while P = O, C-O stretching, O-H bending and Si-O-Si stretching increased 9-22%), surface appearance (disappearance of adhesive organic materials), and elemental compositions (11-49% decreases in C1s) in soil colloids. Moreover, more evident changes were generally in high enzymatic fungi (C. striatus) compared with low enzymatic fungi (G. rutilus). Our findings indicate that inter-fungi differences in EEA types and activities might be responsible for physical and chemical changes in soil colloids (the most active component of soil matrix), highlighting the important roles of soil fungi in soil nutrient cycling and functional maintenance.

The population structure of Escherichia coli isolated from subtropical and temperate soils.

PubMed

Byappanahalli, Muruleedhara N; Yan, Tao; Hamilton, Matthew J; Ishii, Satoshi; Fujioka, Roger S; Whitman, Richard L; Sadowsky, Michael J

2012-02-15

While genotypically-distinct naturalized Escherichia coli strains have been shown to occur in riparian soils of Lake Michigan and Lake Superior watersheds, comparative analyses of E. coli populations in diverse soils across a range of geographic and climatic conditions have not been investigated. The main objectives of this study were to: (a) examine the population structure and genetic relatedness of E. coli isolates collected from different soil types on a tropical island (Hawaii), and (b) determine if E. coli populations from Hawaii and temperate soils (Indiana, Minnesota) shared similar genotypes that may be reflective of biome-related soil conditions. DNA fingerprint and multivariate statistical analyses were used to examine the population structure and genotypic characteristics of the E. coli isolates. About 33% (98 of 293) of the E. coli from different soil types and locations on the island of Oahu, Hawaii, had unique DNA fingerprints, indicating that these bacteria were relatively diverse; the Shannon diversity index for the population was 4.03. Nearly 60% (171 of 293) of the E. coli isolates from Hawaii clustered into two major groups and the rest, with two or more isolates, fell into one of 22 smaller groups, or individual lineages. Multivariate analysis of variance of 89, 21, and 106 unique E. coli DNA fingerprints for Hawaii, Indiana, and Minnesota soils, respectively, showed that isolates formed tight cohesive groups, clustering mainly by location. However, there were several instances of clonal isolates being shared between geographically different locations. Thus, while nearly identical E. coli strains were shared between disparate climatologically- and geographically-distinct locations, a vast majority of the soil E. coli strains were genotypically diverse and were likely derived from separate lineages. This supports the hypothesis that these bacteria are not unique and multiple genotypes can readily adapt to become part of the soil autochthonous microflora. Copyright © 2012 Elsevier B.V. All rights reserved.

The population structure of Escherichia coli isolated from subtropical and temperate soils

USGS Publications Warehouse

Byappanahalli, Muruleedhara N.; Yan, Tao; Hamilton, Matthew J.; Ishii, Satoshi; Fujioka, Roger S.; Whitman, Richard L.; Sadowsky, Michael J.

2012-01-01

While genotypically-distinct naturalized Escherichia coli strains have been shown to occur in riparian soils of Lake Michigan and Lake Superior watersheds, comparative analyses of E. coli populations in diverse soils across a range of geographic and climatic conditions have not been investigated. The main objectives of this study were to: (a) examine the population structure and genetic relatedness of E. coli isolates collected from different soil types on a tropical island (Hawaii), and (b) determine if E. coli populations from Hawaii and temperate soils (Indiana, Minnesota) shared similar genotypes that may be reflective of biome-related soil conditions. DNA fingerprint and multivariate statistical analyses were used to examine the population structure and genotypic characteristics of the E. coli isolates. About 33% (98 of 293) of the E. coli from different soil types and locations on the island of Oahu, Hawaii, had unique DNA fingerprints, indicating that these bacteria were relatively diverse; the Shannon diversity index for the population was 4.03. Nearly 60% (171 of 293) of the E. coli isolates from Hawaii clustered into two major groups and the rest, with two or more isolates, fell into one of 22 smaller groups, or individual lineages. Multivariate analysis of variance of 89, 21, and 106 unique E. coli DNA fingerprints for Hawaii, Indiana, and Minnesota soils, respectively, showed that isolates formed tight cohesive groups, clustering mainly by location. However, there were several instances of clonal isolates being shared between geographically different locations. Thus, while nearly identical E. coli strains were shared between disparate climatologically- and geographically-distinct locations, a vast majority of the soil E. coli strains were genotypically diverse and were likely derived from separate lineages. This supports the hypothesis that these bacteria are not unique and multiple genotypes can readily adapt to become part of the soil autochthonous microflora.

Soil paints as a tool to increase soil awareness among different publics

NASA Astrophysics Data System (ADS)

Muggler, Cristine C.

2013-04-01

The Earth Sciences Museum Alexis Dorofeef at the Soil Department of the Federal University of Viçosa (UFV), Minas Gerais, Brazil, was opened in 1993 with a goal to sensibilize its public about soils, besides the usual geological approach. Since its opening, many of the guided visits include an activity of painting or modelling with soil materials. Such activities have the aim to familiarize people about the properties of soils, in special, colours, consistencies and textures in a joyful way. The tropical soils of the region offer a wide diversity of colours and textures that wonders and intrigues people in general. With time, some of the visitors as well as the museum team started to make trials how it would be to paint walls with the soil paints. It became a project to develop a social technology since the soil paints could be easily prepared and used at much lower cost than industrial paints. Additionally, to have the house painted offers populations living in the peripheral areas of the town of Viçosa the possibility to increase their quality of life by embellishing the surroundings where they live. After the basic know how was developed, the Museum and other extension groups of UFV started to train people in doing it. A brochure was published and the technique spread rapidly in the region and to other parts of the state and country as well. The workshops on soil paint preparation and use, offered by the Museum are open to a much diversified public: school children, professional painters, farmers of the landless movement, etc. The workshops have been taken as an opportunity to approach soils and its importance to life and environment. They start with questions about how people consider and see soils. From this starting point, soil formation processes and soil properties are introduced and discussed with the group. This is followed by the discussion of landscapes and where the soil materials can be collected and what are the differences to be expected between different soil types. Also, how these differences would influence the paint, as for instance, if the soils are coarse textured they will not suit to prepare a paint. With this the participants start to prepare the paints and learn how to apply them. The workshops last from two to three hours. In case the group has enough available time also the field collection of soils and the wall painting are done, taking five to eight hours. In 2012, the Museum realized 69 workshops that reached directly 2500 people. The workshops have been a very successful way to approach different publics and to increase the awareness about soils among them.

[A laboratory and field study on the disposal of domestic waste water based on soil permeation].

PubMed

Yamaura, G

1989-02-01

The present study was conducted to get information necessary for the disposal of domestic waste water by soil permeation. The clarifying ability of soil was examined by conducting laboratory experiments using soil columns and making inquiries about practical disposal facilities based on soil permeation using trenches. In the column experiment, soil columns were prepared by packing polyvinyl chloride pipes with volcanic-ash loam, river sand, or an equivolume mixture of both, and secondary effluent of domestic waste water was poured into each soil column at a daily rate of 100 l/m2. In this experiment, loam and sand loam, both containing fine silt and clay, gave BOD removals of over 95% when the influent BOD load per 1 m3 of soil was less than 10 g/d and gave the coliform group removals of 100% when the influent coliform group load per 1 m3 soil was less than 10(9)/d. Loam and sand loam gave T-P removals of over 90%. The P adsorption capacity of soil was limited to less than 12% of the absorption coefficient of phosphoric acid. All the soils gave low T-N removals, mostly less than 50%. The trench disposal gave high removals of 90-97% for BOD, 90-97% for T-P, and 94-99% for the coliform group but low removals of 11-49% for T-N, showing a trend similar to that of the column disposal. Thus, we can roughly estimate the effectiveness of actual soil permeation disposal from the results of the column experiments. In the waste water permeation region, the extent of waste water permeation exceeded 700 cm horizontally from the trench, but the waste water load within 100 cm laterally from the trench occupied 60.3% of the total. The concentrations of T-C and T-N at almost all observation spots in the permeation region were lower than in the control region, and were not caused to accumulate in soil by waste water loading. In contrast, T-P was accumulated concentratively in the depth range from 50-100 cm right below the trench. The conditions for effective disposal of domestic waste water by soil permeation have been estimated to be: (1) the soil should contain more than 30% silt and clay, (2) the absorption coefficient of phosphoric acid should be more than 1000, (3) the permeation rate should be 1.0-1.8 mm/min, and (4) the soil volume to be permeated should be more than 6.86 m3/person.

Digging into Inquiry-Based Earth Science Research

ERIC Educational Resources Information Center

Schultz, Bryan; Yates, Crystal; Schultz, Jayne M.

2008-01-01

To help eighth-grade students experience the excitement of Earth science research, the authors developed an inquiry-based project in which students evaluated and cataloged their campus geology and soils. Following class discussions of rock-weathering and soil-forming processes, students worked in groups to excavate multiple soil pits in the school…

PESTICIDE MODELS FOR SIMULATING ENVIRONMENTAL TRANSPORT OF SOIL FUMIGANTS

USDA-ARS?s Scientific Manuscript database

Soil fumigants are a special group of pesticides that possess relatively high vapor pressure. Thus a large fraction is in the vapor phase after application in the substrate soil environment. Because of the high vapor pressure, they are also volatile organic compounds with strong potential for air p...

Elemental composition and functional groups in soil labile organic matter fractions

USDA-ARS?s Scientific Manuscript database

Labile organic matter fractions are major components involved in nutrient cycle in soil. In this chapter, we examine three labile organic matter fraction: light fraction (LF), humic acid (HA) and fulvic acid (HA) in Alabama cotton soils (ultisol) amended with chemical fertilizer (NH4NO3) and poult...

Ivermectin dissipation and movement from feces to soil under field conditions.

PubMed

Iglesias, Lucía Emilia; Saumell, Carlos; Sagüés, Federica; Sallovitz, Juan Manuel; Lifschitz, Adrián Luis

2018-01-02

The aim of this work was to evaluate the fate of ivermectin (IVM) at two concentrations in cattle feces and its movement to the nearby soil and plants. Feces were spiked with IVM at two levels: 3000 ng g -1 (high group, HG) and 300 ng g -1 (low group, LG). Artificial dung pats were prepared and deposited in an experimental field area. Feces and underlying soil were sampled up to 60 days post-deposition (dpd). As an additional analysis, grasses growing around the pats were sampled at 30 and 60 dpd. Ivermectin concentrations in all matrices were determined by HPLC. Mean IVM fecal concentrations were in the range between 3901.9 ng g -1 and 2419.2 ng g -1 (high group) and 375.3 ng g -1 and 177.49 ng g -1 (low group). Mean times for 50% and 90% dissipation were 88.23 and 293.03 days (HG) and 39.1 and 129.9 days (LG). Soil concentrations ranged from 26.1 ng g -1 to 71.1 ng g -1 (HG) and 3.4 to 5.9 ng g -1 (LG); in plants, concentrations were between 71.4 and 380.8 ng g -1 and 5.40 and 51.8 ng g -1 in HG and LG, respectively. These results confirm that IVM moves from feces to the underlying soil as well as to nearby plants. The potential risk of detrimental effects on soil organisms and the impact on herbivorous animals should be further evaluated.

An Assessment of Soil Disturbance from Five Harvesting Intensities

Treesearch

John Klepac; Stephen E. Reutebuch; Robert B. Rummer

1999-01-01

Surface soil disturbance was compared among a commercial thinning, group selection, patch cut, 2-age, and clearcut. The thinning, group selection and patch cut units had significantly higher percentages of undisturbed area. The 2-age unit had a significantly higher percentage of area disturbed with litter in place. The clearcut unit had a significantly higher...

Constraining soil C cycling with strategic, adaptive action for data and model reporting

NASA Astrophysics Data System (ADS)

Harden, J. W.; Swanston, C.; Hugelius, G.

2015-12-01

Regional to global carbon assessments include a variety of models, data sets, and conceptual structures. This includes strategies for representing the role and capacity of soils to sequester, release, and store carbon. Traditionally, many soil carbon data sets emerged from agricultural missions focused on mapping and classifying soils to enhance and protect production of food and fiber. More recently, soil carbon assessments have allowed for more strategic measurement to address the functional and spatially explicit role that soils play in land-atmosphere carbon exchange. While soil data sets are increasingly inter-comparable and increasingly sampled to accommodate global assessments, soils remain poorly constrained or understood with regard to their role in spatio-temporal variations in carbon exchange. A more deliberate approach to rapid improvement in our understanding involves a community-based activity than embraces both a nimble data repository and a dynamic structure for prioritization. Data input and output can be transparent and retrievable as data-derived products, while also being subjected to rigorous queries for merging and harmonization into a searchable, comprehensive, transparent database. Meanwhile, adaptive action groups can prioritize data and modeling needs that emerge through workshops, meta-data analyses or model testing. Our continual renewal of priorities should address soil processes, mechanisms, and feedbacks that significantly influence global C budgets and/or significantly impact the needs and services of regional soil resources that are impacted by C management. In order to refine the International Soil Carbon Network, we welcome suggestions for such groups to be led on topics such as but not limited to manipulation experiments, extreme climate events, post-disaster C management, past climate-soil interactions, or water-soil-carbon linkages. We also welcome ideas for a business model that can foster and promote idea and data sharing.

Profiling Nematode Communities in Unmanaged Flowerbed and Agricultural Field Soils in Japan by DNA Barcode Sequencing

PubMed Central

Morise, Hisashi; Miyazaki, Erika; Yoshimitsu, Shoko; Eki, Toshihiko

2012-01-01

Soil nematodes play crucial roles in the soil food web and are a suitable indicator for assessing soil environments and ecosystems. Previous nematode community analyses based on nematode morphology classification have been shown to be useful for assessing various soil environments. Here we have conducted DNA barcode analysis for soil nematode community analyses in Japanese soils. We isolated nematodes from two different environmental soils of an unmanaged flowerbed and an agricultural field using the improved flotation-sieving method. Small subunit (SSU) rDNA fragments were directly amplified from each of 68 (flowerbed samples) and 48 (field samples) isolated nematodes to determine the nucleotide sequence. Sixteen and thirteen operational taxonomic units (OTUs) were obtained by multiple sequence alignment from the flowerbed and agricultural field nematodes, respectively. All 29 SSU rDNA-derived OTUs (rOTUs) were further mapped onto a phylogenetic tree with 107 known nematode species. Interestingly, the two nematode communities examined were clearly distinct from each other in terms of trophic groups: Animal predators and plant feeders were markedly abundant in the flowerbed soils, in contrast, bacterial feeders were dominantly observed in the agricultural field soils. The data from the flowerbed nematodes suggests a possible food web among two different trophic nematode groups and plants (weeds) in the closed soil environment. Finally, DNA sequences derived from the mitochondrial cytochrome oxidase c subunit 1 (COI) gene were determined as a DNA barcode from 43 agricultural field soil nematodes. These nematodes were assigned to 13 rDNA-derived OTUs, but in the COI gene analysis were assigned to 23 COI gene-derived OTUs (cOTUs), indicating that COI gene-based barcoding may provide higher taxonomic resolution than conventional SSU rDNA-barcoding in soil nematode community analysis. PMID:23284767

Plant and soil nutrient stoichiometry along primary ecological successions: Is there any link?

PubMed Central

Di Palo, Francesca

2017-01-01

Ecological stoichiometry suggests that plant Nitrogen (N)-to-Phosphorus (P) ratios respond to changes in both soil N:P stoichiometry and soil N and P availability. Thus we would expect that soil and plant N:P ratios be significantly related along natural gradients of soil development such as those associated with primary ecological successions. Here we explicitly search for linkages between plant and soil N:P stoichiometry along four primary successions distributed across Europe. We measured N and P content in soils and plant compartments (leaf, stem and root) of 72 wild plant species distributed along two sand dune and two glacier successions where soil age ranges from few to thousand years old. Overall we found that soil N:P ratios strongly increased along successional stages, however, plant N:P ratios were neither related to soil N:P stoichiometry nor to changes in soil N and P availability. Instead changes in plant nutrient stoichiometry were “driven” by plant-functional-group identity. Not only N:P ratios differed between legumes, grasses and forbs but each of these plant functional groups maintained N:P ratios relatively constant across pioneer, middle and advanced successional stages. Our evidence is that soil nutrient stoichiometry may not be a good predictor of changes in plant N:P stoichiometry along natural primary ecological successions, which have not reached yet a retrogressive stage. This could be because wild-plants rely on mechanisms of internal nutrient regulation, which make them less dependent to changes in soil nutrient availability under unpredictable environmental conditions. Further studies need to clarify what underlying evolutionary and eco-physiological mechanisms determine changes in nutrient stoichiometry in plant species distributed across natural environmental gradients. PMID:28787437

Maize Endophytic Bacterial Diversity as Affected by Soil Cultivation History.

PubMed

Correa-Galeote, David; Bedmar, Eulogio J; Arone, Gregorio J

2018-01-01

The bacterial endophytic communities residing within roots of maize ( Zea mays L.) plants cultivated by a sustainable management in soils from the Quechua maize belt (Peruvian Andes) were examined using tags pyrosequencing spanning the V4 and V5 hypervariable regions of the 16S rRNA. Across four replicate libraries, two corresponding to sequences of endophytic bacteria from long time maize-cultivated soils and the other two obtained from fallow soils, 793 bacterial sequences were found that grouped into 188 bacterial operational taxonomic units (OTUs, 97% genetic similarity). The numbers of OTUs in the libraries from the maize-cultivated soils were significantly higher than those found in the libraries from fallow soils. A mean of 30 genera were found in the fallow soil libraries and 47 were in those from the maize-cultivated soils. Both alpha and beta diversity indexes showed clear differences between bacterial endophytic populations from plants with different soil cultivation history and that the soils cultivated for long time requires a higher diversity of endophytes. The number of sequences corresponding to main genera Sphingomonas, Herbaspirillum, Bradyrhizobium and Methylophilus in the maize-cultivated libraries were statistically more abundant than those from the fallow soils. Sequences of genera Dyella and Sreptococcus were significantly more abundant in the libraries from the fallow soils. Relative abundance of genera Burkholderia, candidatus Glomeribacter, Staphylococcus, Variovorax, Bacillus and Chitinophaga were similar among libraries. A canonical correspondence analysis of the relative abundance of the main genera showed that the four libraries distributed in two clearly separated groups. Our results suggest that cultivation history is an important driver of endophytic colonization of maize and that after a long time of cultivation of the soil the maize plants need to increase the richness of the bacterial endophytes communities.

Maize Endophytic Bacterial Diversity as Affected by Soil Cultivation History

PubMed Central

Correa-Galeote, David; Bedmar, Eulogio J.; Arone, Gregorio J.

2018-01-01

The bacterial endophytic communities residing within roots of maize (Zea mays L.) plants cultivated by a sustainable management in soils from the Quechua maize belt (Peruvian Andes) were examined using tags pyrosequencing spanning the V4 and V5 hypervariable regions of the 16S rRNA. Across four replicate libraries, two corresponding to sequences of endophytic bacteria from long time maize-cultivated soils and the other two obtained from fallow soils, 793 bacterial sequences were found that grouped into 188 bacterial operational taxonomic units (OTUs, 97% genetic similarity). The numbers of OTUs in the libraries from the maize-cultivated soils were significantly higher than those found in the libraries from fallow soils. A mean of 30 genera were found in the fallow soil libraries and 47 were in those from the maize-cultivated soils. Both alpha and beta diversity indexes showed clear differences between bacterial endophytic populations from plants with different soil cultivation history and that the soils cultivated for long time requires a higher diversity of endophytes. The number of sequences corresponding to main genera Sphingomonas, Herbaspirillum, Bradyrhizobium and Methylophilus in the maize-cultivated libraries were statistically more abundant than those from the fallow soils. Sequences of genera Dyella and Sreptococcus were significantly more abundant in the libraries from the fallow soils. Relative abundance of genera Burkholderia, candidatus Glomeribacter, Staphylococcus, Variovorax, Bacillus and Chitinophaga were similar among libraries. A canonical correspondence analysis of the relative abundance of the main genera showed that the four libraries distributed in two clearly separated groups. Our results suggest that cultivation history is an important driver of endophytic colonization of maize and that after a long time of cultivation of the soil the maize plants need to increase the richness of the bacterial endophytes communities. PMID:29662471

Relationship Between Soil Type and N2O Reductase Genotype (nosZ) of Indigenous Soybean Bradyrhizobia: nosZ-minus Populations are Dominant in Andosols

PubMed Central

Shiina, Yoko; Itakura, Manabu; Choi, Hyunseok; Saeki, Yuichi; Hayatsu, Masahito; Minamisawa, Kiwamu

2014-01-01

Bradyrhizobium japonicum strains that have the nosZ gene, which encodes N2O reductase, are able to mitigate N2O emissions from soils (15). To examine the distribution of nosZ genotypes among Japanese indigenous soybean bradyrhizobia, we isolated bradyrhizobia from the root nodules of soybean plants inoculated with 32 different soils and analyzed their nosZ and nodC genotypes. The 1556 resultant isolates were classified into the nosZ+/nodC+ genotype (855 isolates) and nosZ−/nodC+ genotype (701 isolates). The 11 soil samples in which nosZ− isolates significantly dominated (P < 0.05; the χ2 test) were all Andosols (a volcanic ash soil prevalent in agricultural fields in Japan), whereas the 17 soil samples in which nosZ+ isolates significantly dominated were mainly alluvial soils (non-volcanic ash soils). This result was supported by a principal component analysis of environmental factors: the dominance of the nosZ− genotype was positively correlated with total N, total C, and the phosphate absorption coefficient in the soils, which are soil properties typical of Andosols. Internal transcribed spacer sequencing of representative isolates showed that the nosZ+ and nosZ− isolates of B. japonicum fell mainly into the USDA110 (BJ1) and USDA6 (BJ2) groups, respectively. These results demonstrated that the group lacking nosZ was dominant in Andosols, which can be a target soil type for an N2O mitigation strategy in soybean fields. We herein discussed how the nosZ genotypes of soybean bradyrhizobia depended on soil types in terms of N2O respiration selection and genomic determinants for soil adaptation. PMID:25476067

Relationship between soil type and N₂O reductase genotype (nosZ) of indigenous soybean bradyrhizobia: nosZ-minus populations are dominant in Andosols.

PubMed

Shiina, Yoko; Itakura, Manabu; Choi, Hyunseok; Saeki, Yuichi; Hayatsu, Masahito; Minamisawa, Kiwamu

2014-01-01

Bradyrhizobium japonicum strains that have the nosZ gene, which encodes N2O reductase, are able to mitigate N2O emissions from soils (15). To examine the distribution of nosZ genotypes among Japanese indigenous soybean bradyrhizobia, we isolated bradyrhizobia from the root nodules of soybean plants inoculated with 32 different soils and analyzed their nosZ and nodC genotypes. The 1556 resultant isolates were classified into the nosZ+/nodC+ genotype (855 isolates) and nosZ-/nodC+ genotype (701 isolates). The 11 soil samples in which nosZ- isolates significantly dominated (P < 0.05; the χ(2) test) were all Andosols (a volcanic ash soil prevalent in agricultural fields in Japan), whereas the 17 soil samples in which nosZ+ isolates significantly dominated were mainly alluvial soils (non-volcanic ash soils). This result was supported by a principal component analysis of environmental factors: the dominance of the nosZ- genotype was positively correlated with total N, total C, and the phosphate absorption coefficient in the soils, which are soil properties typical of Andosols. Internal transcribed spacer sequencing of representative isolates showed that the nosZ+ and nosZ- isolates of B. japonicum fell mainly into the USDA110 (BJ1) and USDA6 (BJ2) groups, respectively. These results demonstrated that the group lacking nosZ was dominant in Andosols, which can be a target soil type for an N2O mitigation strategy in soybean fields. We herein discussed how the nosZ genotypes of soybean bradyrhizobia depended on soil types in terms of N2O respiration selection and genomic determinants for soil adaptation.

Relationship between selected physicochemical properties of peaty-mucks soils and main absorbance bands of its FTIR spectra*

NASA Astrophysics Data System (ADS)

Boguta, Patrycja; Sokolowska, Zofia

2013-04-01

Peatlands are a large reservoir of organic matter that is responsible for sorption properties, structure of soils and microbial activity. However, most of the peatlands in Poland have been drained and subjected to agricultural use. Processes of such kind cause acceleration of peat mass transformation to mucks. Changes in peat evolution under melioration processes are mostly characterised by mineralisation and humification. The above processes lead to changes in the morphological, chemical, biological and physical properties of peat soils. Knowledge about changes of these parameters is very important in suitable application of conditions and fertilisers in order to improve agricultural value of soil. One of the indicators which could describe the changes in peat mass could be the water holding capacity index proposed by Gawlik. This parameter characterises the secondary transformation processes taking place in soils. Mucking processes are also well described by humification indexes and organic/inorganic carbon content. However, changes of above physical and physicochemical properties of soils are also connected with changes of chemical structure of organic matter contained in soil material. Organic matter is a significant component of organic soils and it influences such important parameters of all soil like sorptivity. So that, it is also valuable to control state of functional groups which determine sorption capacity of soil. One of the methods which could be applied in this case is observation of absorbance values of functional groups in infrared spectra of samples. This is quick and method but it could be used only in approximate way because of some content of ash and inorganic parts. Main aim of this work was attempt to find relationships beetwen selected physicochemical properties of peats soils and height of the most important infrared bands of these materials. 11 peaty-muck soils were taken from different places in Eastern part of Poland from deph 0-20cm. After homogenizing, selected parameters were determined for all samples. Content of organic carbon was investigated using TOC analyzer (MultiNC 2000, Analityk Jena), water holding capacity indexes were determined via centrifugation/ weighting method proposed by Gawlik, humification index was calculated using colorimetric method proposed by Springer. Infrared spectra were recorded for samples in form of pellets with KBr. Absorbance of the most important bands were measured: carboxylic for COO- as. (1619-1639cm-1), COO- sym. (1383 - 1387cm-1), COOH sym. (1240 - 1266cm-1) and phenolic groups for (~3389-3401cm-1). After this, relationships between all parameters were found. Results showed presence of statistically significant correlation between absorbance of functional groups and organic carbon content. This relation indicated that increase in organic carbon caused increase in functional groups of organic matter. No statistically significant correlation was found for relation of bands height and water holding capacity and humification index. *This work was partly supported by the National Science Centre in Poland, grant No. UMO-2011/03/N/NZ9/04239.

Soils characterisation along ecological forest zones in the Eastern Himalayas

NASA Astrophysics Data System (ADS)

Simon, Alois; Dhendup, Kuenzang; Bahadur Rai, Prem; Gratzer, Georg

2017-04-01

Elevational gradients are commonly used to characterise vegetation patterns and, to a lesser extent, also to describe soil development. Furthermore, interactions between vegetation cover and soil characteristics are repeatedly observed. Combining information on soil development and easily to distinguish forest zones along elevational gradients, creates an added value for forest management decisions especially in less studied mountain regions. For this purpose, soil profiles along elevational gradients in the temperate conifer forests of Western and Central Bhutan, ranging from 2600-4000m asl were investigated. Thereby, 82 soil profiles were recorded and classified according to the World Reference Base for Soil Resources. Based on 19 representative profiles, genetic horizons were sampled and analysed. We aim to provide fundamental information on forest soil characteristics along these elevational transects. The results are presented with regard to ecological forest zones. The elevational distribution of the reference soil groups showed distinct distribution ranges for most of the soils. Cambisols were the most frequently recorded reference soil group with 58% of the sampled profiles, followed by Podzols in higher elevations, and Stagnosols, at intermediate elevations. Fluvisols occurred only at the lower end of the elevational transects and Phaeozems only at drier site conditions in the cool conifer dry forest zone. The humus layer thickness differs between forest zones and show a shift towards increased organic layer (O-layer) with increasing elevation. The reduced biomass productivity with increasing elevation and subsequently lower litter input compensates for the slow decomposition rates. The increasing O-layer thickness is an indicator of restrained intermixing of organic and mineral components by soil organisms at higher elevation. Overall, the soil types and soil characteristics along the elevational gradient showed a continuous and consistent change, instead of abrupt changes. We interpret these as manifestations of changes of temperature and precipitation with elevation which also drives forest zonation in these least anthropogenically influenced forest ecosystems. The elevational distribution of forest zones is correlated with the distribution of soil types and thus also reflects soil characteristics.

Shake table test of soil-pile groups-bridge structure interaction in liquefiable ground

NASA Astrophysics Data System (ADS)

Tang, Liang; Ling, Xianzhang; Xu, Pengju; Gao, Xia; Wang, Dongsheng

2010-03-01

This paper describes a shake table test study on the seismic response of low-cap pile groups and a bridge structure in liquefiable ground. The soil profile, contained in a large-scale laminar shear box, consisted of a horizontally saturated sand layer overlaid with a silty clay layer, with the simulated low-cap pile groups embedded. The container was excited in three El Centro earthquake events of different levels. Test results indicate that excessive pore pressure (EPP) during slight shaking only slightly accumulated, and the accumulation mainly occurred during strong shaking. The EPP was gradually enhanced as the amplitude and duration of the input acceleration increased. The acceleration response of the sand was remarkably influenced by soil liquefaction. As soil liquefaction occurred, the peak sand displacement gradually lagged behind the input acceleration; meanwhile, the sand displacement exhibited an increasing effect on the bending moment of the pile, and acceleration responses of the pile and the sand layer gradually changed from decreasing to increasing in the vertical direction from the bottom to the top. A jump variation of the bending moment on the pile was observed near the soil interface in all three input earthquake events. It is thought that the shake table tests could provide the groundwork for further seismic performance studies of low-cap pile groups used in bridges located on liquefiable groun.

Depletion of Stem Water of Sclerocarya birrea Agroforestry Tree Precedes Start of Rainy Season in West African Sudanian Zone

NASA Astrophysics Data System (ADS)

Ceperley, Natalie; Mande, Theophile; Parlange, Marc B.

2013-04-01

Understanding water use by agroforestry trees in dry-land ecosystems is essential for improving water management. Agroforestry trees are valued and promoted for many of their ecologic and economic benefits but are often criticized as competing for valuable water resources. In order to understand the seasonal patterns of source water used by agroforestry trees, samples from rain, ground, and surface water were collected weekly in the subcatchment of the Singou watershed that is part of the Volta Basin. Soil and vegetation samples were collected from and under a Sclerocarya birrea agroforstry trees located in this catchment in sealed vials, extracted, and analyzed with a Picarro L2130-i CRDS to obtain both δO18 and δDH fractions. Meteorological measurements were taken with a network of wireless, autonomous stations that communicate through the GSM network (Sensorscope) and two complete eddy-covariance energy balance stations, in addition to intense monitoring of sub-canopy solar radiation, throughfall, stemflow, and soil moisture. Examination of the time series of δO18 concentrations confirm that values in soil and xylem water are coupled, both becoming enriched during the dry season and depleted during the rainy season. Xylem water δO18 levels drops to groundwater δO18 levels in early March when trees access groundwater for leafing out, however soil water does not reach this level until soil moisture increases in mid-June. The relationship between the δDH and δO18 concentrations of water extracted from soil and tree samples do not fall along the global meteoric water line. In order to explore whether this was a seasonally driven, we grouped samples into an "evaporated" group or a "meteoric" group based on the smaller residual to the respective lines. Although more soil samples were found along the m-line during the rainy season than tree samples or dry season soil samples, there was no significant difference in days since rain for any group This suggests that xylem water is always under stress from evapotranspiration and soil water underwent evaporation soon after a rain event. Visual observation of tree confirms conclusion that trees access deep ground water in March and April, before rain begins and before soil is connected to groundwater. Results from the research are being integrated into a local outreach project to improve use of agroforestry.

Complexation of cadmium to sulfur and oxygen functional groups in an organic soil

NASA Astrophysics Data System (ADS)

Karlsson, Torbjörn; Elgh-Dalgren, Kristin; Björn, Erik; Skyllberg, Ulf

2007-02-01

Cadmium (Cd) is a toxic trace element and due to human activities soils and waters are contaminated by Cd both on a local and global scale. It is widely accepted that chemical interactions with functional groups of natural organic matter (NOM) is vital for the bioavailability and mobility of trace elements. In this study the binding strength of cadmium (Cd) to soil organic matter (SOM) was determined in an organic (49% organic C) soil as a function of reaction time, pH and Cd concentration. In experiments conducted at native Cd concentrations in soil (0.23 μg g -1 dry soil), halides (Cl, Br) were used as competing ligands to functional groups in SOM. The concentration of Cd in the aqueous phase was determined by isotope-dilution (ID) inductively-coupled-plasma-mass-spectrometry (ICP-MS), and the activity of Cd 2+ was calculated from the well-established Cd-halide constants. At higher Cd loading (500-54,000 μg g -1), the Cd 2+ activity was directly determined by an ion-selective electrode (ISE). On the basis of results from extended X-ray absorption fine structure (EXAFS) spectroscopy, a model with one thiolate group (RS -) was used to describe the complexation (Cd 2+ + RS - ⇆ CdSR +; log KCdSR) at native Cd concentrations. The concentration of thiols (RSH; 0.047 mol kg -1 C) was independently determined by X-ray absorption near-edge structure (XANES) spectroscopy. Log KCdSR values of 11.2-11.6 (p Ka for RSH = 9.96), determined in the pH range 3.1-4.6, compare favorably with stability constants for the association between Cd and well-defined thiolates like glutathione. In the concentration range 500-54,000 μg Cd g -1, a model consisting of one thiolate and one carboxylate (RCOO -) gave the best fit to data, indicating an increasing role for RCOOH groups as RSH groups become saturated. The determined log KCdOOCR of 3.2 (Cd 2+ + RCOO - ⇆ CdOOCR +; log KCdOOCR; p Ka for RCOOH = 4.5) is in accordance with stability constants determined for the association between Cd and well-defined carboxylates. Given a concentration of reduced sulfur groups of 0.2% or higher in NOM, we conclude that the complexation to organic RSH groups may control the speciation of Cd in soils, and most likely also in surface waters, with a total concentration less than 5 mg Cd g -1 organic C.

Metagenomic Analysis of Ammonia-Oxidizing Archaea Affiliated with the Soil Group

PubMed Central

Bartossek, Rita; Spang, Anja; Weidler, Gerhard; Lanzen, Anders; Schleper, Christa

2012-01-01

Ammonia-oxidizing archaea (AOA) have recently been recognized as a significant component of many microbial communities and represent one of the most abundant prokaryotic groups in the biosphere. However, only few AOA have been successfully cultivated so far and information on the physiology and genomic content remains scarce. We have performed a metagenomic analysis to extend the knowledge of the AOA affiliated with group I.1b that is widespread in terrestrial habitats and of which no genome sequences has been described yet. A fosmid library was generated from samples of a radioactive thermal cave (46°C) in the Austrian Central Alps in which AOA had been found as a major part of the microbial community. Out of 16 fosmids that possessed either an amoA or 16S rRNA gene affiliating with AOA, 5 were fully sequenced, 4 of which grouped with the soil/I.1b (Nitrososphaera-) lineage, and 1 with marine/I.1a (Nitrosopumilus-) lineage. Phylogenetic analyses of amoBC and an associated conserved gene were congruent with earlier analyses based on amoA and 16S rRNA genes and supported the separation of the soil and marine group. Several putative genes that did not have homologs in currently available marine Thaumarchaeota genomes indicated that AOA of the soil group contain specific genes that are distinct from their marine relatives. Potential cis-regulatory elements around conserved promoter motifs found upstream of the amo genes in sequenced (meta-) genomes differed in marine and soil group AOA. On one fosmid, a group of genes including amoA and amoB were flanked by identical transposable insertion sequences, indicating that amoAB could potentially be co-mobilized in the form of a composite transposon. This might be one of the mechanisms that caused the greater variation in gene order compared to genomes in the marine counterparts. Our findings highlight the genetic diversity within the two major and widespread lineages of Thaumarchaeota. PMID:22723795

Development of Acid Functional Groups and Lactones During the Thermal Degradation of Wood and Wood Components

USGS Publications Warehouse

Rutherford, David W.; Wershaw, Robert L.; Reeves, James B.

2008-01-01

Black carbon (pyrogenic materials including chars) in soils has been recognized as a substantial portion of soil organic matter, and has been shown to play a vital role in nutrient cycling; however, little is known concerning the properties of this material. Previous studies have largely been concerned with the creation of high-surface-area materials for use as sorbents. These materials have been manufactured at high temperature and have often been activated. Chars occurring in the environment can be formed over a wide range of temperature. Because it is extremely difficult to isolate black carbon once it has been incorporated in soils, chars produced in the laboratory under controlled conditions can be used to investigate the range of properties possible for natural chars. This report shows that charring conditions (temperature and time) have substantial impact on the acid functional group and lactone content of chars. Low temperatures (250?C) and long charring times (greater than 72 hours) produce chars with the highest acid functional group and lactone content. The charring of cellulose appears to be responsible for the creation of the acid functional group and lactones. The significance of this study is that low-temperature chars can have acid functional group contents comparable to humic materials (as high as 8.8 milliequivalents per gram). Acid functional group and lactone content decreases as charring temperature increases. The variation in formation conditions expected under natural fire conditions will result in a wide range of sorption properties for natural chars which are an important component of soil organic matter. By controlling the temperature and duration of charring, it is possible to tailor the sorption properties of chars, which may be used as soil amendments.

Secondary successions of biota in oil-polluted peat soil upon different biological remediation methods

NASA Astrophysics Data System (ADS)

Melekhina, E. N.; Markarova, M. Yu.; Shchemelinina, T. N.; Anchugova, E. M.; Kanev, V. A.

2015-06-01

The effects of different bioremediation methods on restoration of the oil-polluted peat soil (Histosol) in the northernmost taiga subzone of European Russia was studied. The population dynamics of microorganisms belonging to different trophic groups (hydrocarbon-oxidizing, ammonifying, nitrifying, and oligonitrophilic) were analyzed together with data on the soil enzyme (catalase and dehydrogenase) activities, population densities of soil microfauna groups, their structures, and states of phytocenoses during a sevenyear-long succession. The remediation with biopreparations Roder composed of oil-oxidizing microorganisms-Roder with Rhodococcus rubber and R. erythropolis and Universal with Rhodotorula glutinis and Rhodococcus sp.-was more efficient than the agrochemical and technical remediation. It was concluded that the biopreparations activate microbiological oil destruction, thereby accelerating restoration succession of phytocenosis and zoocenosis. The succession of dominant microfauna groups was observed: the dipteran larvae and Mesostigmata mites predominant at the early stages were replaced by collembolans at later stages. The pioneer oribatid mite species were Tectocepheus velatus, Oppiella nova, Liochthonius sellnicki, Oribatula tibialis, and Eupelops sp.

H 2-saturation of high affinity H 2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups

DOE PAGES

Piché-Choquette, Sarah; Tremblay, Julien; Tringe, Susannah G.; ...

2016-03-10

Soil microbial communities are continuously exposed to H 2 diffusing into the soil from the atmosphere. N 2-fixing nodules represent a peculiar microniche in soil where H 2 can reach concentrations up to 20,000 fold higher than in the global atmosphere (0.530 ppmv). In this study, we investigated the impact of H 2 exposure on soil bacterial community structure using dynamic microcosm chambers simulating soil H 2 exposure from the atmosphere and N 2-fixing nodules. Biphasic kinetic parameters governing H 2 oxidation activity in soil changed drastically upon elevated H 2 exposure, corresponding to a slight but significant decay ofmore » high affinity H 2-oxidizing bacteria population, accompanied by an enrichment or activation of microorganisms displaying low-affinity for H 2. In contrast to previous studies that unveiled limited response by a few species, the relative abundance of 958 bacterial ribotypes distributed among various taxonomic groups, rather than a few distinct taxa, was influenced by H 2 exposure. Furthermore, correlation networks showed important alterations of ribotype covariation in response to H 2 exposure, suggesting that H 2 affects microbe-microbe interactions in soil. Taken together, our results demonstrate that H 2-rich environments exert a direct influence on soil H 2-oxidizing bacteria in addition to indirect effects on other members of the bacterial communities.« less

H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups

PubMed Central

Piché-Choquette, Sarah; Tremblay, Julien; Tringe, Susannah G.

2016-01-01

Soil microbial communities are continuously exposed to H2 diffusing into the soil from the atmosphere. N2-fixing nodules represent a peculiar microniche in soil where H2 can reach concentrations up to 20,000 fold higher than in the global atmosphere (0.530 ppmv). In this study, we investigated the impact of H2 exposure on soil bacterial community structure using dynamic microcosm chambers simulating soil H2 exposure from the atmosphere and N2-fixing nodules. Biphasic kinetic parameters governing H2 oxidation activity in soil changed drastically upon elevated H2 exposure, corresponding to a slight but significant decay of high affinity H2-oxidizing bacteria population, accompanied by an enrichment or activation of microorganisms displaying low-affinity for H2. In contrast to previous studies that unveiled limited response by a few species, the relative abundance of 958 bacterial ribotypes distributed among various taxonomic groups, rather than a few distinct taxa, was influenced by H2 exposure. Furthermore, correlation networks showed important alterations of ribotype covariation in response to H2 exposure, suggesting that H2 affects microbe-microbe interactions in soil. Taken together, our results demonstrate that H2-rich environments exert a direct influence on soil H2-oxidizing bacteria in addition to indirect effects on other members of the bacterial communities. PMID:26989620

Distribution of rare-earth (Y, La, Ce) and other heavy metals in the profiles of the podzolic soil group

NASA Astrophysics Data System (ADS)

Vodyanitskii, Yu. N.; Goryachkin, S. V.; Savichev, A. T.

2011-05-01

Along with Fe and Al, many heavy metals (Mn, Cr, Zn, Cu, and Ni) show a markedly pronounced eluvial-illuvial redistribution in the profiles of soils of the podzolic group. The intensity of the redistribution of the bulk forms of these metals is comparable with that of Fe and exceeds that of Al. Although the podzolic soils are depleted of rare-earth metals, the latter respond readily to soil podzolization. The inactive participation of Al is explained by an insignificant portion of the active reaction-capable fraction. Podzolization does not influence the profile distribution of Sr and Ba. The leaching degree of heavy metals such as Mn, Cr, Zn, Ni, and Zr is noticeably higher in the sandy podzols than in the loamy podzolic soils. Leaching of heavy metals from the podzolic horizons is of geochemical importance, whereas the depletion of metals participating in plant nutrition and biota development is of ecological importance. The leaching of heavy metals is related to the destruction of clay particles in the heavy-textured podzolic soils; the effect of the soil acidity on the leaching of heavy metals is less significant.

Chemical sensing thresholds for mine detection dogs

NASA Astrophysics Data System (ADS)

Phelan, James M.; Barnett, James L.

2002-08-01

Mine detection dogs have been found to be an effective method to locate buried landmines. The capabilities of the canine olfaction method are from a complex combination of training and inherent capacity of the dog for odor detection. The purpose of this effort was to explore the detection thresholds of a limited group of dogs that were trained specifically for landmine detection. Soils were contaminated with TNT and 2,4-DNT to develop chemical vapor standards to present to the dogs. Soils contained ultra trace levels of TNT and DNT, which produce extremely low vapor levels. Three groups of dogs were presented the headspace vapors from the contaminated soils in work environments for each dog group. One positive sample was placed among several that contained clean soils and, the location and vapor source (strength, type) was frequently changed. The detection thresholds for the dogs were determined from measured and extrapolated dilution of soil chemical residues and, estimated soil vapor values using phase partitioning relationships. The results showed significant variances in dog sensing thresholds, where some dogs could sense the lowest levels and others had trouble with even the highest source. The remarkable ultra-trace levels detectable by the dogs are consistent with the ultra-trace chemical residues derived from buried landmines; however, poor performance may go unnoticed without periodic challenge tests at levels consistent with performance requirements.

Manure Refinement Affects Apple Rhizosphere Bacterial Community Structure: A Study in Sandy Soil

PubMed Central

Zhang, Qiang; Sun, Jian; Liu, Songzhong; Wei, Qinping

2013-01-01

We used DNA-based pyrosequencing to characterize the bacterial community structure of the sandy soil of an apple orchard with different manure ratios. Five manure percentages (5%, 10%, 15%, 20% and 25%) were examined. More than 10,000 valid reads were obtained for each replicate. The communities were composed of five dominant groups (Proteobacteria, Actinobacteria, Chloroflexi, Acidobacteria and Bacteroidetes), of which Proteobacteria content gradually decreased from 41.38% to 37.29% as manure ratio increased from 0% to 25%, respectively. Redundancy analysis showed that 37 classes were highly correlated with manure ratio, 18 of which were positively correlated. Clustering revealed that the rhizosphere samples were grouped into three components: low manure (control, 5%) treatment, medium manure (10%, 15%) treatment and high manure (20%, 25%) treatment. Venn analysis of species types of these three groups revealed that the bacteria community difference was primarily reflected by quantity ratio rather than species variety. Although greater manure content led to higher soil organic matter content, the medium manure improved soil showed the highest urease activity and saccharase activity, while 5% to 20% manure ratio improvement also resulted in higher bacteria diversity than control and 25% manure ratio treatment. Our experimental results suggest that the use of a proper manure ratio results in significantly higher soil enzyme activity and different bacteria community patterns, whereas the use of excessive manure amounts has negative effect on soil quality. PMID:24155909

Towards a model-based inventory of soil organic carbon in agricultural soils for the Swiss greenhouse gas reporting

NASA Astrophysics Data System (ADS)

Staudt, K.; Leifeld, J.; Bretscher, D.; Fuhrer, J.

2012-04-01

The Swiss inventory submission under the United Nations Framework Convention on Climate Change (UNFCCC) reports on changes in soil organic carbon stocks under different land-uses and land-use changes. The approach currently employed for cropland and grassland soils combines Tier 1 and Tier 2 methods and is considered overly simplistic. As the UNFCC encourages countries to develop Tier 3 methods for national greenhouse gas reporting, we aim to build up a model-based inventory of soil organic carbon in agricultural soils in Switzerland. We conducted a literature research on currently employed higher-tier methods using process-based models in four countries: Denmark, Sweden, Finland and the USA. The applied models stem from two major groups differing in complexity - those belonging to the group of general ecosystem models that include a plant-growth submodel, e.g. Century, and those that simulate soil organic matter turnover but not plant-growth, e.g. ICBM. For the latter group, carbon inputs to the soil from plant residues and roots have to be determined separately. We will present some aspects of the development of a model-based inventory of soil organic carbon in agricultural soils in Switzerland. Criteria for model evaluation are, among others, modeled land-use classes and land-use changes, spatial and temporal resolution, and coverage of relevant processes. For model parameterization and model evaluation at the field scale, data from several long-term agricultural experiments and monitoring sites in Switzerland is available. A subsequent regional application of a model requires the preparation of regional input data for the whole country - among others spatio-temporal meteorological data, agricultural and soil data. Following the evaluation of possible models and of available data, preference for application in the Swiss inventory will be given to simpler model structures, i.e. models without a plant-growth module. Thus, we compared different allometric relations for the estimation of plant carbon inputs to the soil from yield data that are usually provided with the models. Calculated above- and below-ground carbon inputs vary substantially between methods and exhibit different sensitivities to yield data. As a benchmark, inputs to the soil from above- and below-ground crop residues are calculated with the IPCC default method. Furthermore, the suitability of these estimation methods for Swiss conditions is tested.

Development of remote sensing techniques capable of delineating soils as an aid to soil survey

NASA Technical Reports Server (NTRS)

Coleman, T. L.; Montgomery, O. L.

1988-01-01

Eighty-one benchmark soils from Alabama, Georgia, Florida, Tennessee, and Mississippi were evaluated to determine the feasibility of spectrally differentiating among soil categories. Relationships among spectral properties that occur between soils and within soils were examined, using discriminant analysis. Soil spectral data were obtained from air-dried samples using an Exotech Model 20C field spectroradiometer (0.37 to 2.36 microns). Differentiating among the orders, suborders, great groups, and subgroups using reflectance spectra achieved varying percentages of accuracy. Six distinct reflectance curve forms were developed from the air-dried samples based on the shape and presence or absence of adsorption bands. Iron oxide and organic matter content were the dominant soil parameters affecting the spectral characteristics for differentiating among and between these soils.

Multilaboratory evaluation of methods for detecting enteric viruses in soils.

PubMed Central

Hurst, C J; Schaub, S A; Sobsey, M D; Farrah, S R; Gerba, C P; Rose, J B; Goyal, S M; Larkin, E P; Sullivan, R; Tierney, J T

1991-01-01

Two candidate methods for the recovery and detection of viruses in soil were subjected to round robin comparative testing by members of the American Society for Testing and Materials D19:24:04:04 Subcommittee Task Group. Selection of the methods, designated "Berg" and "Goyal," was based on results of an initial screening which indicated that both met basic criteria considered essential by the task group. Both methods utilized beef extract solutions to achieve desorption and recovery of viruses from representative soils: a fine sand soil, an organic muck soil, a sandy loam soil, and a clay loam soil. One of the two methods, Goyal, also used a secondary concentration of resulting soil eluants via low-pH organic flocculation to achieve a smaller final assay volume. Evaluation of the two methods was simultaneously performed in replicate by nine different laboratories. Each of the produced samples was divided into portions, and these were respectively subjected to quantitative viral plaque assay by both the individual, termed independent, laboratory which had done the soil processing and a single common reference laboratory, using a single cell line and passage level. The Berg method seemed to produce slightly higher virus recovery values; however, the differences in virus assay titers for samples produced by the two methods were not statistically significant (P less than or equal to 0.05) for any one of the four soils. Despite this lack of a method effect, there was a statistically significant laboratory effect exhibited by assay titers from the independent versus reference laboratories for two of the soils, sandy loam and clay loam. PMID:1849712

Multilaboratory evaluation of methods for detecting enteric viruses in soils.

PubMed

Hurst, C J; Schaub, S A; Sobsey, M D; Farrah, S R; Gerba, C P; Rose, J B; Goyal, S M; Larkin, E P; Sullivan, R; Tierney, J T

1991-02-01

Two candidate methods for the recovery and detection of viruses in soil were subjected to round robin comparative testing by members of the American Society for Testing and Materials D19:24:04:04 Subcommittee Task Group. Selection of the methods, designated "Berg" and "Goyal," was based on results of an initial screening which indicated that both met basic criteria considered essential by the task group. Both methods utilized beef extract solutions to achieve desorption and recovery of viruses from representative soils: a fine sand soil, an organic muck soil, a sandy loam soil, and a clay loam soil. One of the two methods, Goyal, also used a secondary concentration of resulting soil eluants via low-pH organic flocculation to achieve a smaller final assay volume. Evaluation of the two methods was simultaneously performed in replicate by nine different laboratories. Each of the produced samples was divided into portions, and these were respectively subjected to quantitative viral plaque assay by both the individual, termed independent, laboratory which had done the soil processing and a single common reference laboratory, using a single cell line and passage level. The Berg method seemed to produce slightly higher virus recovery values; however, the differences in virus assay titers for samples produced by the two methods were not statistically significant (P less than or equal to 0.05) for any one of the four soils. Despite this lack of a method effect, there was a statistically significant laboratory effect exhibited by assay titers from the independent versus reference laboratories for two of the soils, sandy loam and clay loam.

Characterization of the spatial variability of soil available zinc at various sampling densities using grouped soil type information.

PubMed

Song, Xiao-Dong; Zhang, Gan-Lin; Liu, Feng; Li, De-Cheng; Zhao, Yu-Guo

2016-11-01

The influence of anthropogenic activities and natural processes involved high uncertainties to the spatial variation modeling of soil available zinc (AZn) in plain river network regions. Four datasets with different sampling densities were split over the Qiaocheng district of Bozhou City, China. The difference of AZn concentrations regarding soil types was analyzed by the principal component analysis (PCA). Since the stationarity was not indicated and effective ranges of four datasets were larger than the sampling extent (about 400 m), two investigation tools, namely F3 test and stationarity index (SI), were employed to test the local non-stationarity. Geographically weighted regression (GWR) technique was performed to describe the spatial heterogeneity of AZn concentrations under the non-stationarity assumption. GWR based on grouped soil type information (GWRG for short) was proposed so as to benefit the local modeling of soil AZn within each soil-landscape unit. For reference, the multiple linear regression (MLR) model, a global regression technique, was also employed and incorporated the same predictors as in the GWR models. Validation results based on 100 times realization demonstrated that GWRG outperformed MLR and can produce similar or better accuracy than the GWR approach. Nevertheless, GWRG can generate better soil maps than GWR for limit soil data. Two-sample t test of produced soil maps also confirmed significantly different means. Variogram analysis of the model residuals exhibited weak spatial correlation, rejecting the use of hybrid kriging techniques. As a heuristically statistical method, the GWRG was beneficial in this study and potentially for other soil properties.

A semester-long soil mapping project for an undergraduate pedology course

NASA Astrophysics Data System (ADS)

Brown, David J.

2015-04-01

Most students taking a pedology course will never work as soil mappers. But many will use soil maps at some point in their careers. At Montana State University, students spent 3 "lab" hours a week, complementing two lectures a week, in the field learning how to study soils literally from the ground up. The only prerequisites for enrollment were completion of an introductory soil science class and 3rd year standing at the university. The area to be mapped, just a km from campus, included a steep mountain backslope, and a complex footslope-toeslope area with diverse soils. Students were divided into teams of 3-4, with approximately 40 students altogether split over two sections that overlapped in the field by one hour. In the first lab session, groups completed a very basic description of just one soil profile. In subsequent weeks, they rotated through multiple pits excavated in a small area, and expanded their soil profile descriptions and interpretations. As students developed proficiency, they were assigned more dispersed locations to study, working for the most part independently as I hiked between pits. Throughout this process, every pit was geolocated using a GPS unit, and every profile description was copied and retained in a designated class file. Student groups delineated map units using stereo air photography, then used these delineations to guide the selection of their final locations to describe. At the end of the course, groups used all of the combined and georeferenced profile descriptions to construct a soil map of the study area complete with map unit descriptions. Most students struggled to make sense of the substantial variability within their map units, but through this struggle -- and their semester of field work -- they gained an appreciation for the value and limitations of a soil map that could not be obtained from even the most entertaining lecture. Both the class and particularly the field sessions received consistently high student reviews during the four years I had students map soils at Montanta State University.

Reduced soil cultivation and organic fertilization on organic farms: effects on crop yield and soil physical traits

NASA Astrophysics Data System (ADS)

Surböck, Andreas; Gollner, Gabriele; Klik, Andreas; Freyer, Bernhard; Friedel, Jürgen K.

2017-04-01

A continuous investment in soil fertility is necessary to achieve sustainable yields in organic arable farming. Crucial factors here besides the crop rotation are organic fertilization and the soil tillage system. On this topic, an operational group (Project BIOBO*) was established in the frame of an European Innovation Partnership in 2016 consisting of organic farmers, consultants and scientists in the farming region of eastern Austria. The aim of this group is the development and testing of innovative, reduced soil cultivation, green manure and organic fertilization systems under on-farm and on-station conditions to facilitate the sharing and transfer of experience and knowledge within and outside the group. Possibilities for optimization of the farm-specific reduced soil tillage system in combination with green manuring are being studied in field trials on six organic farms. The aim is to determine, how these measures contribute to an increase in soil organic matter contents, yields and income, to an improved nitrogen and nutrient supply to the crops, as well as support soil fertility in general. Within a long-term monitoring project (MUBIL), the effects of different organic fertilization systems on plant and soil traits have been investigated since 2003, when the farm was converted to organic management. The examined organic fertilization systems, i.e. four treatments representing stockless and livestock keeping systems, differ in lucerne management and the supply of organic manure (communal compost, farmyard manure, digestate from a biogas plant). Previous results of this on-station experiment have shown an improvement of some soil properties, especially soil physical properties, since 2003 in all fertilization systems and without differences between them. The infiltration rate of rainwater has increased because of higher hydraulic conductivity. The aggregate stability has shown also positive trends, which reduces the susceptibility to soil erosion by wind and water. The improvements are attributed to the crop rotation with two-year lucerne and other crops with a dense root system. In autumn 2015, the soil tillage in the trial was converted from an intensive use of the plough to a reduced tillage system with a chisel. With this change, further improvements in soil properties, especially in connection with organic fertilizers, are expected and are further examined. Plots in which the previous tillage with the plough is continued, allow a comparison of the effects of the different soil tillage systems. * The project BIOBO is supported by the Austrian Federal Government, Austrian Federal Provinces and the European Union.

Evaluation of automated global mapping of Reference Soil Groups of WRB2015

NASA Astrophysics Data System (ADS)

Mantel, Stephan; Caspari, Thomas; Kempen, Bas; Schad, Peter; Eberhardt, Einar; Ruiperez Gonzalez, Maria

2017-04-01

SoilGrids is an automated system that provides global predictions for standard numeric soil properties at seven standard depths down to 200 cm, currently at spatial resolutions of 1km and 250m. In addition, the system provides predictions of depth to bedrock and distribution of soil classes based on WRB and USDA Soil Taxonomy (ST). In SoilGrids250m(1), soil classes (WRB, version 2006) consist of the RSG and the first prefix qualifier, whereas in SoilGrids1km(2), the soil class was assessed at RSG level. Automated mapping of World Reference Base (WRB) Reference Soil Groups (RSGs) at a global level has great advantages. Maps can be updated in a short time span with relatively little effort when new data become available. To translate soil names of older versions of FAO/WRB and national classification systems of the source data into names according to WRB 2006, correlation tables are used in SoilGrids. Soil properties and classes are predicted independently from each other. This means that the combinations of soil properties for the same cells or soil property-soil class combinations do not necessarily yield logical combinations when the map layers are studied jointly. The model prediction procedure is robust and probably has a low source of error in the prediction of RSGs. It seems that the quality of the original soil classification in the data and the use of correlation tables are the largest sources of error in mapping the RSG distribution patterns. Predicted patterns of dominant RSGs were evaluated in selected areas and sources of error were identified. Suggestions are made for improvement of WRB2015 RSG distribution predictions in SoilGrids. Keywords: Automated global mapping; World Reference Base for Soil Resources; Data evaluation; Data quality assurance References 1 Hengl T, de Jesus JM, Heuvelink GBM, Ruiperez Gonzalez M, Kilibarda M, et al. (2016) SoilGrids250m: global gridded soil information based on Machine Learning. Earth System Science Data (ESSD), in review. 2 Hengl T, de Jesus JM, MacMillan RA, Batjes NH, Heuvelink GBM, et al. (2014) SoilGrids1km — Global Soil Information Based on Automated Mapping. PLoS ONE 9(8): e105992. doi:10.1371/journal.pone.0105992

Presenting the 3rd edition of WRB

NASA Astrophysics Data System (ADS)

Schad, Peter

2014-05-01

The third edition of the international soil classification system "World Reference Base for Soil Resources" (WRB) will be presented during der 20th World Congress of Soil Science, Jeju, Korea, June 9-12. The second edition was published in 2006 and the first in 1998, which, in turn, was based on the Legends of the FAO Soil Map of the World. Now, after eight years of experience with the second edition, time was due for a revision. The major changes are: 1. The second edition had two different qualifier sequences for naming soils (IUSS Working Group WRB, 2006, update 2007) and for creating map legends (Guidelines for creating small-scale map legends using the WRB; IUSS Working Group WRB, 2010). The third edition has one sequence for both. The qualifiers for every Reference Soil Group are subdivided into a small number of main qualifiers that are ranked and a larger number of additional qualifiers that are not ranked and given in an alphabetical order. The name of a pedon must comprise all applying qualifiers. The name of a map unit comprises a specified small number of main qualifiers, depending on scale, whereas all other qualifiers are optional. 2. For some soils, problems have been reported. Albeluvisols are difficult to detect in the field and cover only small surfaces. They have been replaced by Retisols, which have a broader definition that is easier to identify in the field. 3. The use of some diagnostics was difficult. Examples are: The argic horizon had too low limit values, so we had much more soils with argic horizons than justified. The definitions of the cambic horizon and the gleyic and stagnic properties were not precise enough. Organic material, mollic and umbric horizons had an unnecessary complicated definition. 4. Some changes in the key to the Reference Soil Groups seemed to be justified. Fluvisols were moved further down, Durisols and Gypsisols switched their position, also Arenosols and Cambisols. The soils with an argic horizon were brought into a new sequence. 5. The umbrella function of WRB aims to allow the allocation of soil classes existing in a national classification system within the WRB. Characteristics that in a national system are regarded to be important must be considered in WRB - not necessarily at the highest level, but at least somewhere. The third edition of WRB allows a better accommodation of soil types, e.g., of the Australian and the Brazilian system. 6. Some environments or even ecoregions had not been well represented in WRB. The third edition allows a better accommodation of soils of ultra-continental permafrost regions, acid-sulphate soils and Technosols. 7. How to explain complicated sets of characteristics? For the third edition, efforts were made to give better structured definitions that can be more easily grasped. The editors of the third edition are convinced that the new WRB allows a more precise classification of soils including both, a better naming of pedons and a better elaboration of soil map legends.

Bacterial community succession in a high-altitude subarctic glacier foreland is a three-stage process.

PubMed

Kazemi, Sina; Hatam, Ido; Lanoil, Brian

2016-11-01

Alpine glaciers are retreating rapidly, exposing foreland minerals, which develop into soils. Bacterial communities in glacier forelands exhibit high rates of turnover and undergo dramatic shifts in composition within the first 50 years after deglaciation, followed by relative stabilization and convergence. This period of microbial development occurs simultaneously with plant colonization in most systems; thus, it remains unclear whether the changes in the bacterial communities occur primarily as the result of edaphic, climatic or biotic factors. We examined bacterial community structure along two replicate chronosequences within the glacial foreland of Duke River Glacier, Yukon, Canada. This foreland is estimated to include >200 years of bare soils before an appreciable grassline, likely due to the high latitude and altitude of the glacier. This enabled us to examine bacterial community development prior to plant colonization over a longer period than previous studies. We observed three successional groups in the chronosequence: (i) an 'early' group in soils of less than approximately 50 years since deglaciation; (ii) an 'intermediate' group within bare soils, after the early period but before the grassline, containing communities with a relatively high degree of variability in composition; and (iii) a 'grassline' group in soils collected after plant colonization with higher diversity but lower age-group variability in community composition. These findings suggest rapid replacement and addition of species better adapted to glacier foreland conditions followed by slower community shifts over the next 150 years and, finally, indications of a possible response to plant colonization. © 2016 John Wiley & Sons Ltd.

[Characteristics of Adsorption Leaching and Influencing Factors of Dimethyl Phthalate in Purple Soil].

PubMed

Wang, Qiang; Song, Jiao-yan; Zeng, Wei; Wang, Fa

2016-02-15

The typical soil-purple soil in Three Gorges Reservoir was the tested soil, the characteristics of adsorption leaching of dimethyl phthalate (DMP) in contaminated water by the soil, and the influencing factors in the process were conducted using soil column leaching experiment. The results showed that the parabolic equation was the best equation describing adsorption kinetics of DMP by soils. The concentration of DMP in the leaching solution had significant effect on the adsorption amounts of DMP. With the increasing concentration of DMP in the leaching solution, the adsorption capacities of DMP by purple soil increased linearly. The ionic strength and pH in leaching solution had significant effects on adsorption of DMP. On the whole, increasing of the ionic strength restrained the adsorption. The adsorption amounts at pH 5.0-7.0 were more than those under other pH condition. The addition of exogenous organic matter (OM) in purple soil increased the adsorption amount of DMP by purple soil. However, the adsorption amount was less than those with other addition amounts of exogenous OM when the addition of exogenous OM was too high (> or = 30 g x kg(-1)). The addition of surfactant sodium dodecylbenzene sulfonic acid (SDBS) in purple soil increased the adsorption amount of DMP by purple soil. The adsorption amount was maximal when the addition amount of SDBS was 50 mg x kg(-1). However, the adsorption amounts decreased with increasing addition amounts of SDBS although the adsorption amounts were still more than that of the control group, and the adsorption amount was almost equal to that of the control group when the addition amount of SDBS was 800 mg x kg(-1). Continuous leaching time affected the vertical distribution of DMP in the soil column. When the leaching time was shorter, the upper soil column adsorbed more DMP, while the DMP concentrations in upper and lower soil columns became similar with the extension of leaching time.

Properties of Soil Pore Space Regulate Pathways of Plant Residue Decomposition and Community Structure of Associated Bacteria

PubMed Central

Negassa, Wakene C.; Guber, Andrey K.; Kravchenko, Alexandra N.; Marsh, Terence L.; Hildebrandt, Britton; Rivers, Mark L.

2015-01-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO2 emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis of amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO2 emission constituted 1,200 µm C g-1 soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO2 emission constituted 2,000 µm C g-1 soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO2 emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes. PMID:25909444

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria

DOE PAGES

Negassa, Wakene C.; Guber, Andrey K.; Kravchenko, Alexandra N.; ...

2015-07-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO₂ emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis ofmore » amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO₂ emission constituted 1,200 µm C g⁻¹ soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO₂ emission constituted 2,000 µm C g⁻¹ soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO₂ emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes.« less

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria.

PubMed

Negassa, Wakene C; Guber, Andrey K; Kravchenko, Alexandra N; Marsh, Terence L; Hildebrandt, Britton; Rivers, Mark L

2015-01-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO2 emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis of amplified 16S-18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75-80% of the added plant residue was decomposed, cumulative CO2 emission constituted 1,200 µm C g(-1) soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO2 emission constituted 2,000 µm C g(-1) soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO2 emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes.

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria

DOE Office of Scientific and Technical Information (OSTI.GOV)

Negassa, Wakene C.; Guber, Andrey K.; Kravchenko, Alexandra N.

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO₂ emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis ofmore » amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO₂ emission constituted 1,200 µm C g⁻¹ soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO₂ emission constituted 2,000 µm C g⁻¹ soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO₂ emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes.« less

Development of a standard soil-to-skin adherence probability density function for use in Monte Carlo analyses of dermal exposure.

PubMed

Finley, B L; Scott, P K; Mayhall, D A

1994-08-01

It has recently been suggested that "standard" data distributions for key exposure variables should be developed wherever appropriate for use in probabilistic or "Monte Carlo" exposure analyses. Soil-on-skin adherence estimates represent an ideal candidate for development of a standard data distribution: There are several readily available studies which offer a consistent pattern of reported results, and more importantly, soil adherence to skin is likely to vary little from site-to-site. In this paper, we thoroughly review each of the published soil adherence studies with respect to study design, sampling, and analytical methods, and level of confidence in the reported results. Based on these studies, probability density functions (PDF) of soil adherence values were examined for different age groups and different sampling techniques. The soil adherence PDF developed from adult data was found to resemble closely the soil adherence PDF based on child data in terms of both central tendency (mean = 0.49 and 0.63 mg-soil/cm2-skin, respectively) and 95th percentile values (1.6 and 2.4 mg-soil/cm2-skin, respectively). Accordingly, a single, "standard" PDF is presented based on all data collected for all age groups. This standard PDF is lognormally distributed; the arithmetic mean and standard deviation are 0.52 +/- 0.9 mg-soil/cm2-skin. Since our review of the literature indicates that soil adherence under environmental conditions will be minimally influenced by age, sex, soil type, or particle size, this PDF should be considered applicable to all settings. The 50th and 95th percentile values of the standard PDF (0.25 and 1.7 mg-soil/cm2-skin, respectively) are very similar to recent U.S. EPA estimates of "average" and "upper-bound" soil adherence (0.2 and 1.0 mg-soil/cm2-skin, respectively).

Changing roles of ammonia-oxidizing bacteria and archaea in a continuously acidifying soil caused by over-fertilization with nitrogen.

PubMed

Song, He; Che, Zhao; Cao, Wenchao; Huang, Ting; Wang, Jingguo; Dong, Zhaorong

2016-06-01

Nitrification coupled with nitrate leaching contributes to soil acidification. However, little is known about the effect of soil acidification on nitrification, especially on ammonia oxidation that is the rate-limiting step of nitrification and performed by ammonia-oxidizing bacteria (AOB) and archaea (AOA). Serious soil acidification occurs in Chinese greenhouses due to the overuse of N-fertilizer. In the present study, greenhouse soils with 1, 3, 5, 7, and 9 years of vegetable cultivation showed a consistent pH decline (i.e., 7.0, 6.3, 5.6, 4.9, and 4.3). Across the pH gradient, we analyzed the community structure and abundance of AOB and AOA by pyrosequencing and real-time PCR techniques, respectively. The recovered nitrification potential (RNP) method was used to determine relative contributions of AOA and AOB to nitrification potential. The results revealed that soil acidification shaped the community structures of AOA and AOB. In acidifying soil, soil pH, NH3 concentration, and DOC content were critical factors shaping ammonia oxidizer community structure. AOB abundance, but not AOA, was strongly influenced by soil acidification. When soil pH was below 5.0, AOA rather than AOB were responsible for almost all of the RNP. However, when soil pH ranged from 5.6 to 7.0, AOB were the major contributors to RNP. The group I.1a-associatied AOA had more relative abundance in low pH (pH<6.3), whereas group I.1b tended to prefer neutral pH. Clusters 2, 10, and 12 in AOB were more abundant in acidic soil (pH <5.6), while Nitrosomonas-like lineage and unclassified lineage 3 were prevailing in neutral soil and slightly acidic soil (pH, 6.0-6.5), respectively. These results suggested that soil acidification had a profound impact on ammonia oxidation and more specific lineages in AOB occupying different pH-associated niches required further investigation.

A Problem-Based Learning Approach to Teaching Introductory Soil Science

ERIC Educational Resources Information Center

Amador, Jose A.; Gorres, Josef H.

2004-01-01

At most land-grant universities in the USA, Introduction to Soil Science is traditionally taught using a combination of lecture and laboratory formats. To promote engagement, improve comprehension, and enhance retention of content by students, we developed a problem-based learning (PBL) introductory soil science course. Students work in groups to…

Diffuse-reflectance fourier-transform mid-infrared spectroscopy as a method of characterizing changes in soil organic matter

USDA-ARS?s Scientific Manuscript database

Diffuse-Reflectance Fourier-Transform Mid-Infrared Spectroscopy (MidIR) can identify the presence of important organic functional groups in soil organic matter (SOM). Soils contain myriad organic and inorganic components that absorb in the MidIR so spectral interpretation needs to be validated in or...

Emission and distribution of fumigants as affected by soil moistures in three different textured soils

USDA-ARS?s Scientific Manuscript database

Stringent environmental regulations are being developed to control the emission of soil fumigants to reduce air pollution. Water application is a low-cost strategy for fumigant emission control and applicable for a wide range of commodity groups, especially those with low profit margins. Although it...

Influence of altered precipitation pattern on greenhouse gas emissions and soil enzyme activities in Pannonian soils

NASA Astrophysics Data System (ADS)

Forstner, Stefan Johannes; Michel, Kerstin; Berthold, Helene; Baumgarten, Andreas; Wanek, Wolfgang; Zechmeister-Boltenstern, Sophie; Kitzler, Barbara

2013-04-01

Precipitation patterns are likely to be altered due to climate change. Recent models predict a reduction of mean precipitation during summer accompanied by a change in short-term precipitation variability for central Europe. Correspondingly, the risk for summer drought is likely to increase. This may especially be valid for regions which already have the potential for rare, but strong precipitation events like eastern Austria. Given that these projections hold true, soils in this area will receive water irregularly in few, heavy rainfall events and be subjected to long-lasting dry periods in between. This pattern of drying/rewetting can alter soil greenhouse gas fluxes, creating a potential feedback mechanism for climate change. Microorganisms are the key players in most soil carbon (C) and nitrogen (N) transformation processes including greenhouse gas exchange. A conceptual model proposed by Schimel and colleagues (2007) links microbial stress-response physiology to ecosystem-scale biogeochemical processes: In order to cope with decreasing soil water potential, microbes modify resource allocation patterns from growth to survival. However, it remains unclear how microbial resource acquisition via extracellular enzymes and microbial-controlled greenhouse gas fluxes respond to water stress induced by soil drying/rewetting. We designed a laboratory experiment to test for effects of multiple drying/rewetting cycles on soil greenhouse gas fluxes (CO2, CH4, N2O, NO), microbial biomass and extracellular enzyme activity. Three soils representing the main soil types of eastern Austria were collected in June 2012 at the Lysimeter Research Station of the Austrian Agency for Health and Food Safety (AGES) in Vienna. Soils were sieved to 2mm, filled in steel cylinders and equilibrated for one week at 50% water holding capacity (WHC) for each soil. Then soils were separated into two groups: One group received water several times per week (C=control), the other group received water only once in two weeks (D=dry). Both groups received same water totals for each soil. At the end of each two week drying period, greenhouse gas fluxes were measured via an open-chamber-system (CO2, NO) and a closed-chamber-approach (CH4, N2O, CO2). Additional cylinders were harvested destructively to quantify inorganic N forms, microbial biomass C, N and extracellular enzyme activity (Cellulase, Xylanase, Protease, Phenoloxidase, Peroxidase). We hypothesize that after rewetting (1) rates of greenhouse gas fluxes will generally increase, as well as (2) extracellular enzyme activity indicating enhanced microbial activity. However, response may be different for gases and enzymes involved in the C and N cycle, respectively, as drying/rewetting stress may uncouple microbial mediated biogeochemical cycles. Results will be presented at the EGU General Assembly. Reference: Schimel, J., Balser, T.C., and Wallenstein, M. (2007). Microbial stress-response physiology and its implications for ecosystem function. Ecology 88, 1386-1394.

Transfer of the nationwide Czech soil survey data to a foreign soil classification - generating input parameters for a process-based soil erosion modelling approach

NASA Astrophysics Data System (ADS)

Beitlerová, Hana; Hieke, Falk; Žížala, Daniel; Kapička, Jiří; Keiser, Andreas; Schmidt, Jürgen; Schindewolf, Marcus

2017-04-01

Process-based erosion modelling is a developing and adequate tool to assess, simulate and understand the complex mechanisms of soil loss due to surface runoff. While the current state of available models includes powerful approaches, a major drawback is given by complex parametrization. A major input parameter for the physically based soil loss and deposition model EROSION 3D is represented by soil texture. However, as the model has been developed in Germany it is dependent on the German soil classification. To exploit data generated during a massive nationwide soil survey campaign taking place in the 1960s across the entire Czech Republic, a transfer from the Czech to the German or at least international (e.g. WRB) system is mandatory. During the survey the internal differentiation of grain sizes was realized in a two fractions approach, separating texture into solely above and below 0.01 mm rather than into clayey, silty and sandy textures. Consequently, the Czech system applies a classification of seven different textures based on the respective percentage of large and small particles, while in Germany 31 groups are essential. The followed approach of matching Czech soil survey data to the German system focusses on semi-logarithmic interpolation of the cumulative soil texture curve additionally on a regression equation based on a recent database of 128 soil pits. Furthermore, for each of the seven Czech texture classes a group of typically suitable classes of the German system was derived. A GIS-based spatial analysis to test approaches of interpolation the soil texture was carried out. First results show promising matches and pave the way to a Czech model application of EROSION 3D.

Soil water availability and microsite mediate fungal and bacterial phospholipid fatty acid biomarker abundances in Mojave Desert soils exposed to elevated atmospheric CO2

NASA Astrophysics Data System (ADS)

Jin, V. L.; Schaeffer, S. M.; Ziegler, S. E.; Evans, R. D.

2011-06-01

Changes in the rates of nitrogen (N) cycling, microbial carbon (C) substrate use, and extracellular enzyme activities in a Mojave Desert ecosystem exposed to elevated atmospheric CO2 suggest shifts in the size and/or functional characteristics of microbial assemblages in two dominant soil microsites: plant interspaces and under the dominant shrub Larrea tridentata. We used ester-linked phospholipid fatty acid (PLFA) biomarkers as a proxy for microbial biomass to quantify spatial and temporal differences in soil microbial communities from February 2003 to May 2005. Further, we used the 13C signature of the fossil CO2 source for elevated CO2 plots to trace recent plant C inputs into soil organic matter (SOM) and broad microbial groups using δ13C (‰). Differences between individual δ13CPLFA and δ13CSOM for fungal biomarkers indicated active metabolism of newer C in elevated CO2 soils. Total PLFA-C was greater in shrub microsites compared to plant interspaces, and CO2 treatment differences within microsites increased under higher soil water availability. Total, fungal, and bacterial PLFA-C increased with decreasing soil volumetric water content (VWC) in both microsites, suggesting general adaptations to xeric desert conditions. Increases in fungal-to-bacterial PLFA-C ratio with decreasing VWC reflected functional group-specific responses to changing soil water availability. While temporal and spatial extremes in resource availability in desert ecosystems contribute to the difficulty in identifying common trends or mechanisms driving microbial responses in less extreme environments, we found that soil water availability and soil microsite interacted with elevated CO2 to shift fungal and bacterial biomarker abundances in Mojave Desert soils.

Demonstration Results for the Phytoextraction of Lead-Contaminated Soil at the Twin Cities Army Ammunition Plant, Arden Hills, Minnesota

DTIC Science & Technology

2000-07-01

and leachate collection prior to approval of future phytoextraction at sites such as this. Lead Phytoremediation Demonstration 8-1...number) FIELD GROUP SUB-GROUP Phytoremediation of Lead-Contaminated Soil 19. ABSTRACT (Continue on reverse if necessary and identify by block number...editions are obsolete SECURITY CLASSIFICATION OF THIS PAGE Lead Phytoremediation Demonstration

Analysis of the suitability of various soil groups and types of climate for avocado growing in the state of Michoacán, Mexico

NASA Astrophysics Data System (ADS)

Dubrovina, I. A.; Bautista, F.

2014-05-01

Avocado is the largest cash crop exported by Mexico, and the state of Michoacán is its largest producer. For the further development of avocado plantations, the optimal edaphic and bioclimatic conditions for this crop should be determined. We performed a review of the literature to find out the requirements of the avocado for soil and climatic conditions and analyzed the maps, soil databases, and data from local weather stations in the studied region for developing scales of suitability of soils and climates for avocado growing. To verify these scales, a method of data mining was applied; a decision tree developed by this method confirmed the high accuracy and adequacy of the suggested grouping.

Distribution and variation of arsenic in Wisconsin surface soils, with data on other trace elements

USGS Publications Warehouse

Stensvold, Krista A.

2012-01-01

Soils with sandy glacial outwash as a parent material have a lower median arsenic concentration (1.0 mg/kg) than soils forming in other parent materials (1.5 to 3.0 mg/kg). Soil texture and drainage category also influence median arsenic concentration. Finer grained soils have a higher observed range of concentrations. For loamy and loess-dominated soil groups, drainage category influences the median arsenic concentration and observed range of values, but a consistent relationship within the data is not apparent. Statistical analysis of the 16 other elements are presented in this report, but the relationships of concentrations to soil properties or geographic areas were not examined.

Annual grass invasion in sagebrush-steppe: The relative importance of climate, soil properties and biotic interactions

USGS Publications Warehouse

Bansal, Sheel; Sheley, Roger L.

2016-01-01

The invasion by winter-annual grasses (AGs) such as Bromus tectorum into sagebrush steppe throughout the western USA is a classic example of a biological invasion with multiple, interacting climate, soil and biotic factors driving the invasion, although few studies have examined all components together. Across a 6000-km2 area of the northern Great Basin, we conducted a field assessment of 100 climate, soil, and biotic (functional group abundances, diversity) factors at each of 90 sites that spanned an invasion gradient ranging from 0 to 100 % AG cover. We first determined which biotic and abiotic factors had the strongest correlative relationships with AGs and each resident functional group. We then used regression and structural equation modeling to explore how multiple ecological factors interact to influence AG abundance. Among biotic interactions, we observed negative relationships between AGs and biodiversity, perennial grass cover, resident species richness, biological soil crust cover and shrub density, whereas perennial and annual forb cover, tree cover and soil microbial biomass had no direct linkage to AG. Among abiotic factors, AG cover was strongly related to climate (increasing cover with increasing temperature and aridity), but had weak relationships with soil factors. Our structural equation model showed negative effects of perennial grasses and biodiversity on AG cover while integrating the negative effects of warmer climate and positive influence of belowground processes on resident functional groups. Our findings illustrate the relative importance of biotic interactions and climate on invasive abundance, while soil properties appear to have stronger relationships with resident biota than with invasives.

Development of type transfer functions for regional-scale nonpoint source groundwater vulnerability assessments

NASA Astrophysics Data System (ADS)

Stewart, Iris T.; Loague, Keith

2003-12-01

Groundwater vulnerability assessments of nonpoint source agrochemical contamination at regional scales are either qualitative in nature or require prohibitively costly computational efforts. By contrast, the type transfer function (TTF) modeling approach for vadose zone pesticide leaching presented here estimates solute concentrations at a depth of interest, only uses available soil survey, climatic, and irrigation information, and requires minimal computational cost for application. TTFs are soil texture based travel time probability density functions that describe a characteristic leaching behavior for soil profiles with similar soil hydraulic properties. Seven sets of TTFs, representing different levels of upscaling, were developed for six loam soil textural classes with the aid of simulated breakthrough curves from synthetic data sets. For each TTF set, TTFs were determined from a group or subgroup of breakthrough curves for each soil texture by identifying the effective parameters of the function that described the average leaching behavior of the group. The grouping of the breakthrough curves was based on the TTF index, a measure of the magnitude of the peak concentration, the peak arrival time, and the concentration spread. Comparison to process-based simulations show that the TTFs perform well with respect to mass balance, concentration magnitude, and the timing of concentration peaks. Sets of TTFs based on individual soil textures perform better for all the evaluation criteria than sets that span all textures. As prediction accuracy and computational cost increase with the number of TTFs in a set, the selection of a TTF set is determined by a given application.

Quantitative modeling of soil genesis processes

NASA Technical Reports Server (NTRS)

Levine, E. R.; Knox, R. G.; Kerber, A. G.

1992-01-01

For fine spatial scale simulation, a model is being developed to predict changes in properties over short-, meso-, and long-term time scales within horizons of a given soil profile. Processes that control these changes can be grouped into five major process clusters: (1) abiotic chemical reactions; (2) activities of organisms; (3) energy balance and water phase transitions; (4) hydrologic flows; and (5) particle redistribution. Landscape modeling of soil development is possible using digitized soil maps associated with quantitative soil attribute data in a geographic information system (GIS) framework to which simulation models are applied.

Accumulation of germanium and rare earth elements in functional groups of selected energy crops cultivated on two different soils

NASA Astrophysics Data System (ADS)

Wiche, Oliver; Székely, Balázs

2016-04-01

A field experiment was conducted to investigate the uptake of Ge and selected REEs in functional groups of selected crop species. Five species belonging to the functional group of grasses (Hordeum vulgare, Zea mays, Avena sativa, Panicum miliaceum and Phalaris arundinacea) and four species from the group of herbs (Lupinus albus, Lupinus angustifolius, Fagopyrum esculentum and Brassica napus) were cultivated in parallel on two soils with slightly alkaline (soil A: pH = 7.8) and slightly acidic (soil B: pH = 6.8) conditions. After harvest, concentrations of Ge, La, Nd, Gd, Er, P, Fe, Mn and Si in shoot tissues were determined with ICP-MS. Concentrations of Ge were significantly higher in grasses than in herbs. Conversely, concentrations of La and Nd were significantly higher in herbs, than in grasses. Highest concentrations were measured in Brassica napus (REEs) and Zea mays (Ge). Concentrations of Ge significantly correlated with that of Si in the shoots showing low concentrations in herbs and high concentrations in grasses, indicating a common mechanism during the uptake in grasses. Concentrations of REEs correlated significantly with that of Fe, indicating increasing concentrations of REEs with increasing concentrations of Fe. Cultivation of species on the slightly acidic soil significantly increased the uptake Ge in Lupinus albus and Phalaris arundinacea and the uptake of La and Nd in all species except of Phalaris arundinacea. This study demonstrated that commonly used field crops could be regarded as suitable candidates for a phytomining of Ge and REEs, since these species develop high yields of shoots, high concentrations of elements and are widely used in agricultural practice. Under soil conditions where bioavailability of Ge and REEs is expected to be low (soil A) accumulation can be estimated at 1.8 g/ha Ge in Z. mays and 3.7 g/ha REEs (1.5 g/ha La, 1.4 g/ha Nd, 0.6 g/ha Gd, 0.3 g/ha Er), respectively, in B. napus, assuming a constant high efficiency of phytoextraction in closed stands. Slight changes in soil properties like soil pH and fractions of REEs bound to organic matter significantly enhanced the uptake of Ge, La and Nd in plants. Thus, measures in soil management hold promise for enhanced phytoextraction of Ge and predominantly light REEs from soils, however, the impact of acidifying fertilizers and other soil amendments on the phytoextraction of Ge and REEs remain a field for further investigations. These studies have been carried out in the framework of the PhytoGerm project financed by the Federal Ministry of Education and Research, Germany.

Is encopresis always the result of constipation?

PubMed Central

Benninga, M A; Büller, H A; Heymans, H S; Tytgat, G N; Taminiau, J A

1994-01-01

Encopresis is often the result of chronic constipation in the majority of paediatric patients. In clinical practice, however, encopresis is also seen without constipation and it is unknown whether these two clinical variants are based on similar or different pathophysiological mechanisms, requiring different therapeutic approaches. We analysed clinical symptoms, colonic transit time (CTT), orocaecal transit time (OCTT), anorectal manometric profiles, and behavioural scores. Patients were divided into two groups, one consisted of 111 children with paediatric constipation, and another group of 50 children with encopresis and/or soiling without constipation. Significant clinical differences in children with encopresis/soiling existed compared with children with paediatric constipation regarding: bowel movements per week, the number of daytime soiling episodes, the presence of night time soiling, the presence and number of encopresis episodes, normal stools, pain during defecation, abdominal pain, and good appetite. Total and segmental CTT were significantly prolonged in paediatric constipation compared with encopresis/soiling, 62.4 (3.6-384) and 40.2 (10.8-104.4) hours, respectively. No significant differences were found in OCTT. Among the two groups, all manometric parameters were comparable, except for a significantly higher threshold of sensation in children with paediatric constipation. The defecation dynamics were abnormal in 59% and 46% in paediatric constipation and encopresis/soiling, respectively, and were significantly different from controls. Using the child behaviour checklist no significant differences were found when comparing children with paediatric constipation and encopresis/soiling, while both patient groups differed significantly from controls. In conclusion, our findings support the concept of the existence of encopresis as a distinct entity in children with defecation disorders. Identification of such children is based on clinical symptoms, that is, normal defecation frequency, absence of abdominal or rectal palpable mass, in combination with normal marker studies and normal anal manometric threshold of sensation, Thus, encopresis is not always the result of constipation and can be the only clinical presentation of a defecation disorder. PMID:7979489

[Short-term effect of black film covering on Oncomelania hupensis snail control in marshland and lake regions].

PubMed

Zheng, Sheng-bang; Zhou, Yi-biao; Li, Lin-han; Wu, Jin-yi; Yao, Bao-dong; Zhu, Shao-ping; Wei, Cheng-jian; Li, Fu-ping; Hu, Ben-jiao; Ren, Guang-hui; Yi, Ping; Jiang, Qing-wu

2013-08-01

To evaluate the short-term effect of the black film covering combined with niclosamide on Oncomelania hupensis snail control in marshland and lake regions. A ditch with snails in Anxiang County was selected as the experimental sites. The ditch was divided into 3 groups: a film group, a niclosamide group, and a niclosamide and film group. The snails were surveyed before the test and 1, 3, 5, 7 days after the experiment. After the film covering, the highest temperature of the surface of soil was 63.7 degrees C on the first day, and the temperature higher than 40 degrees C lasted 4.34 hours. On the second day, the highest temperature was 52.3 degrees C, and the temperature higher than 40 degrees C lasted 4.96 hours. On the fourth day and fifth day, the temperature was lower than 30 degrees C, while the temperature was lower than 34 degrees C on the sixth day. On the seventh day of the experiment, the snail death rates of the film group, the niclosamide group, and the niclosamide and film group on the soil surface were 16.36%, 58.40% and 53.57%, respectively. On the seventh day, the snail death rates of the film group, and the niclosamide and film group under the soil were 20.00% and 40.00%, respectively, while no snails were found under the soil in the niclosamide group 3 days after the experiment. In mesh bags, the snail death rates of the film group, the niclosamide group, and the niclosamide and film group were 84.00%, 95.33% and 95.33%, respectively. The short-term effect of the black film covering on snail control is not obvious, and the black film covering does no promote the molluscicidal effect of niclosamide.

[Assemblage effect of ground arthropod community in desert steppe shrubs with different ages].

PubMed

Liu, Ren-Tao; Zhu, Fan; Chai, Yong-Qing

2014-01-01

Taking the 6-, 15-, 24- and 36-year-old Caragana intermedia shrubs in desert steppe as a subject, an investigation on soil properties and ground arthropod community was carried out under the shrub and in the open to probe into the assemblage effect of ground arthropod community in desert steppe shrubs with different ages. The results were as follows: 1) In the 6-year-old shrubland, significant differences were only found in soil physical properties (soil texture, soil moisture and electrical conductivity) between the microhabitats under shrub and in the open. Beginning from the 15-year-old shrubland, however, soil organic matter and nutrition (N, P) increased significantly. 2) A total of 27 groups were captured in the studied sites which dominated by Carabidae, Tenebrionidae and Formicidae. From 6- to 15-year-old shrubland, the number of dominant groups decreased while that of common groups increased for the ground arthropod community under the shrub. From 15- to 24- and 36-year-old shrubland, the difference between the microhabitats under the shrub and in the open decreased firstly, and then increased. Some special groups appeared under the shrub in the 36-year-old shrubland, and dung beetles became dominant. 3) In the 6- and 24-year-old shrublands, there were no significant differences in group richness, abundance, and diversity index between the microhabitats under the shrub and in the open. As for the 15- and 36-year-old shrublands, however, significant differences were observed. 4) The shrub age had a stronger effect on the distribution of ground arthropods living under the shrubs compared to that in the open. The changes in soil texture, pH and electrical conductivity could significantly influence on the distribution of ground arthropods under the shrub, also in the open to some degree. It was suggested that the development of shrubland had strong impact on assemblage effect of ground arthropods, which was closely correlated with the stand age and would affect the recovery of sandy grassland ecosystems.

Indices of soil contamination by heavy metals - methodology of calculation for pollution assessment (minireview).

PubMed

Weissmannová, Helena Doležalová; Pavlovský, Jiří

2017-11-07

This article provides the assessment of heavy metal soil pollution with using the calculation of various pollution indices and contains also summarization of the sources of heavy metal soil pollution. Twenty described indices of the assessment of soil pollution consist of two groups: single indices and total complex indices of pollution or contamination with relevant classes of pollution. This minireview provides also the classification of pollution indices in terms of the complex assessment of soil quality. In addition, based on the comparison of metal concentrations in soil-selected sites of the world and used indices of pollution or contamination in soils, the concentration of heavy metal in contaminated soils varied widely, and pollution indices confirmed the significant contribution of soil pollution from anthropogenic activities mainly in urban and industrial areas.

Estimation of soil-soil solution distribution coefficient of radiostrontium using soil properties.

PubMed

Ishikawa, Nao K; Uchida, Shigeo; Tagami, Keiko

2009-02-01

We propose a new approach for estimation of soil-soil solution distribution coefficient (K(d)) of radiostrontium using some selected soil properties. We used 142 Japanese agricultural soil samples (35 Andosol, 25 Cambisol, 77 Fluvisol, and 5 others) for which Sr-K(d) values had been determined by a batch sorption test and listed in our database. Spearman's rank correlation test was carried out to investigate correlations between Sr-K(d) values and soil properties. Electrical conductivity and water soluble Ca had good correlations with Sr-K(d) values for all soil groups. Then, we found a high correlation between the ratio of exchangeable Ca to Ca concentration in water soluble fraction and Sr-K(d) values with correlation coefficient R=0.72. This pointed us toward a relatively easy way to estimate Sr-K(d) values.

Effects of simulated acid rain on soil fauna community composition and their ecological niches.

PubMed

Wei, Hui; Liu, Wen; Zhang, Jiaen; Qin, Zhong

2017-01-01

Acid rain is one of the severest environmental issues globally. Relative to other global changes (e.g., warming, elevated atmospheric [CO 2 ], and nitrogen deposition), however, acid rain has received less attention than its due. Soil fauna play important roles in multiple ecological processes, but how soil fauna community responds to acid rain remains less studied. This microcosm experiment was conducted using latosol with simulated acid rain (SAR) manipulations to observe potential changes in soil fauna community under acid rain stress. Four pH levels, i.e., pH 2.5, 3.5, 4.5, and 5.5, and a neutral control of pH 7.0 were set according to the current pH condition and acidification trend of precipitation in southern China. As expected, we observed that the SAR treatments induced changes in soil fauna community composition and their ecological niches in the tested soil; the treatment effects tended to increase as acidity increased. This could be attributable to the environmental stresses (such as acidity, porosity and oxygen supply) induced by the SAR treatments. In addition to direct acidity effect, we propose that potential changes in permeability and movability of water and oxygen in soils induced by acid rain could also give rise to the observed shifts in soil fauna community composition. These are most likely indirect pathways of acid rain to affect belowground community. Moreover, we found that nematodes, the dominating soil fauna group in this study, moved downwards to mitigate the stress of acid rain. This is probably detrimental to soil fauna in the long term, due to the relatively severer soil conditions in the deep than surface soil layer. Our results suggest that acid rain could change soil fauna community and the vertical distribution of soil fauna groups, consequently changing the underground ecosystem functions such as organic matter decomposition and greenhouse gas emissions. Copyright © 2016 Elsevier Ltd. All rights reserved.

Organic carbon stocks and sequestration rates of forest soils in Germany.

PubMed

Grüneberg, Erik; Ziche, Daniel; Wellbrock, Nicole

2014-08-01

The National Forest Soil Inventory (NFSI) provides the Greenhouse Gas Reporting in Germany with a quantitative assessment of organic carbon (C) stocks and changes in forest soils. Carbon stocks of the organic layer and the mineral topsoil (30 cm) were estimated on the basis of ca. 1.800 plots sampled from 1987 to 1992 and resampled from 2006 to 2008 on a nationwide grid of 8 × 8 km. Organic layer C stock estimates were attributed to surveyed forest stands and CORINE land cover data. Mineral soil C stock estimates were linked with the distribution of dominant soil types according to the Soil Map of Germany (1 : 1 000 000) and subsequently related to the forest area. It appears that the C pool of the organic layer was largely depending on tree species and parent material, whereas the C pool of the mineral soil varied among soil groups. We identified the organic layer C pool as stable although C was significantly sequestered under coniferous forest at lowland sites. The mineral soils, however, sequestered 0.41 Mg C ha(-1) yr(-1) . Carbon pool changes were supposed to depend on stand age and forest transformation as well as an enhanced biomass input. Carbon stock changes were clearly attributed to parent material and soil groups as sandy soils sequestered higher amounts of C, whereas clayey and calcareous soils showed small gains and in some cases even losses of soil C. We further showed that the largest part of the overall sample variance was not explained by fine-earth stock variances, rather by the C concentrations variance. The applied uncertainty analyses in this study link the variability of strata with measurement errors. In accordance to other studies for Central Europe, the results showed that the applied method enabled a reliable nationwide quantification of the soil C pool development for a certain period. © 2014 The Authors. Global Change Biology Published by John Wiley & Sons Ltd.

Organic carbon stocks and sequestration rates of forest soils in Germany

PubMed Central

Grüneberg, Erik; Ziche, Daniel; Wellbrock, Nicole

2014-01-01

The National Forest Soil Inventory (NFSI) provides the Greenhouse Gas Reporting in Germany with a quantitative assessment of organic carbon (C) stocks and changes in forest soils. Carbon stocks of the organic layer and the mineral topsoil (30 cm) were estimated on the basis of ca. 1.800 plots sampled from 1987 to 1992 and resampled from 2006 to 2008 on a nationwide grid of 8 × 8 km. Organic layer C stock estimates were attributed to surveyed forest stands and CORINE land cover data. Mineral soil C stock estimates were linked with the distribution of dominant soil types according to the Soil Map of Germany (1 : 1 000 000) and subsequently related to the forest area. It appears that the C pool of the organic layer was largely depending on tree species and parent material, whereas the C pool of the mineral soil varied among soil groups. We identified the organic layer C pool as stable although C was significantly sequestered under coniferous forest at lowland sites. The mineral soils, however, sequestered 0.41 Mg C ha−1 yr−1. Carbon pool changes were supposed to depend on stand age and forest transformation as well as an enhanced biomass input. Carbon stock changes were clearly attributed to parent material and soil groups as sandy soils sequestered higher amounts of C, whereas clayey and calcareous soils showed small gains and in some cases even losses of soil C. We further showed that the largest part of the overall sample variance was not explained by fine-earth stock variances, rather by the C concentrations variance. The applied uncertainty analyses in this study link the variability of strata with measurement errors. In accordance to other studies for Central Europe, the results showed that the applied method enabled a reliable nationwide quantification of the soil C pool development for a certain period. PMID:24616061

Classification and Use of Natural and Anthropogenic Soils by Indigenous Communities of the Upper Amazon Region of Colombia.

PubMed

Peña-Venegas, C P; Stomph, T J; Verschoor, G; Echeverri, J A; Struik, P C

Outsiders often oversimplify Amazon soil use by assuming that abundantly available natural soils are poorly suited to agriculture and that sporadic anthropogenic soils are agriculturally productive. Local perceptions about the potentials and limitations of soils probably differ, but information on these perceptions is scarce. We therefore examined how four indigenous communities in the Middle Caquetá River region in the Colombian Amazon classify and use natural and anthropogenic soils. The study was framed in ethnopedology: local classifications, preferences, rankings, and soil uses were recorded through interviews and field observations. These communities recognized nine soils varying in suitability for agriculture. They identified anthropogenic soils as most suitable for agriculture, but only one group used them predominantly for their swiddens. As these communities did not perceive soil nutrient status as limiting, they did not base crop-site selection on soil fertility or on the interplay between soil quality and performance of manioc genetic resources.

Nutrient stoichiometry of temperate trees and effects on the coupled cycles of carbon, nitrogen, and cations in soil

NASA Astrophysics Data System (ADS)

Mueller, K. E.; Oleksyn, J.; Hobbie, S. E.; Reich, P.; Chorover, J. D.; Freeman, K. H.; Eissenstat, D.

2009-12-01

Nutrient stoichiometry of leaf litter (LL) is a potentially important driver of plant effects on soil biogeochemistry; it is also responsive to environmental perturbations and differs among plant functional groups that may have predictable responses to the environment. Thus variation in LL nutrient stoichiometry may provide a predictive framework for the influence of global change on soil. However, this approach depends on several key, but poorly tested assumptions, including: 1) other plant organs follow similar patterns and have similar effects on soil biogeochemistry, and 2) patterns in leaf traits, functional group dominance, and soil properties across large-spatial scales are predictive at smaller scales. To address these assumptions and test the utility of nutrient stoichiometry as a predictive framework for soil change, we synthesize data on tree stoichiometry and soil biogeochemistry from a long-term (> 30 yr) common garden experiment containing replicated, monoculture plots of 14 temperate tree species. LL nutrient stoichiometry alone is insufficient to explain differences in biogeochemical cycling among tree species, in part due to the dissimilarity of leaf and root traits within species. Notably, different elements and plant organs have independent impacts on soil biogeochemistry. LL nitrogen (N) concentration and lignin:N ratios have small or negligible effects on soil carbon (C), N, and cation cycling, while LL-calcium (Ca) drives differences in litter decomposition and soil pH among species in a manner consistent with nutrient requirements of anecic earthworms. However, LL-Ca effects on C and N cycles in soil appear minor compared to the influences of root N and, unexpectedly, green leaf N, which combine to drive differences in soil N dynamics via unique mechanisms consistent with nutrient requirements of soil microbes and the trees. In turn, soil N dynamics are strongly correlated with soil acidity and C stabilization. By taking into account the stoichiometry of each plant organ, of soil microbes and fauna, and the interactions among C, N, and cation cycles, the predictive capacity of tree nutrient stoichiometry for understanding soil change is apparent, albeit complex.

Compositon of sediments transported by the wind at different heights

NASA Astrophysics Data System (ADS)

Iturri, Antonela; Funk, Roger; Leue, Martin; Sommer, Michael; Buschiazzo, Daniel

2017-04-01

Wind erosion (WE) is one of the most important degradation process of soils in arid- and semiarid environments in the world, affecting soil properties and adjacent ecosystems, including human health. Estimations about the amount of eroded soil are available in Argentina and in the world, but the quality of the eroded sediments, particularly the sorting effects in agricultural soils, has been scarcely studied. The trend of the different mineral and organic soil compounds, which enrich in different size classes, can define height distribution profiles. Therefore, the uppermost 2.5 cm of four agricultural loess soils that differ in granulometric composition were used for WE simulations in a wind tunnel. Particles with a diameter smaller than 10 µm (PM10) were collected with a laboratory dust generator. The bulk soil and all the sediment samples were characterized by the granulometric composition, the soil organic carbon (SOC) content and the mineral and organic functional groups. Despite different texture, the soils were subjected to similar sorting processes in height, but differed depending on their granulometry. There was a separation between coarser and finer soil particles in coarser textured soils, while finer textured soils were more homogeneous in all heights. This correlated with the preferential transport of Si-O from quartz and C-H, C=O and C-C from soil organic matter (SOM), which were transported in larger and/or denser particles at lower heights. O-H from clay minerals and C-O-C and C-O from polysaccharides, carbohydrates and derivatives from SOM were transported in higher heights. Despite similar SOC content in the bulk soils, both the amount and composition in the PM10 fractions was different. The SOC transported at higher heights was mostly composed of polysaccharides, carbohydrates and derivatives associated with clay minerals. The SOC in PM10 fractions of coarser-textured soils was dominated by labile C-H groups. According to the determined height distribution profiles, it can be deduced that WE may affect both soil quality and the soil C balance due to the sorting effects during transport.

Gut shuttle service: endozoochory of dispersal-limited soil fauna by gastropods.

PubMed

Türke, Manfred; Lange, Markus; Eisenhauer, Nico

2018-03-01

Numerous important ecosystem functions and services depend on soil biodiversity. However, little is known about the mechanisms which maintain the vast belowground biodiversity and about the filters shaping soil community composition. Yet, biotic interactions like facilitation and dispersal by animals are assumed to play a crucial role, particularly as most soil animal taxa are strongly limited in their active dispersal abilities. Here, we report on a newfound interaction of potentially high ubiquity and importance in soil communities: the endozoochorous dispersal of soil fauna by gastropods. We focus on the dispersal-limited group of oribatid mites, one of the most diverse and abundant soil animal groups. In a field survey in a German riparian forest, 73% of 40 collected slugs (Arion vulgaris) egested a total of 135 oribatid mites, belonging to 35 species. Notably, 70% of the egested mites were alive and survived the gut passage through slugs. Similar results were found for Roman snails (Helix pomatia), indicating the generality of our findings across different gastropod taxa. Complementary laboratory experiments confirmed our field observations, revealing that oribatid mites are, indeed, ingested and egested alive by slugs, and that they are able to independently escape the faeces and colonise new habitats. Our results strongly indicate that gastropods may help soil organisms to disperse within habitats, to overcome dispersal barriers, and to reach short-lived resource patches. Gastropods might even disperse whole multi-trophic micro-ecosystems, a discovery that could have profound implications for our understanding of dispersal mechanisms and the distribution of soil biodiversity.

Urbanization alters the functional composition, but not taxonomic diversity, of the soil nematode community

Treesearch

Mitchell A. Pavao-Zuckerman; David C. Coleman

2007-01-01

We evaluated the response of riparian forest soil nematode community structure to the physico-chemical environment associated with urban land use. Soils were sampled seasonally between December 2000 and October 2002 along an urban-rural transect in Asheville, North Carolina. We characterized the taxonomic (to genus) and functional composition (trophic groups) of the...

SOIL AND WATER CONSERVATION PROJECTS AND ACTIVITIES, A GUIDE FOR 4-H CLUB LEADERS.

ERIC Educational Resources Information Center

FOSTER, ALBERT B.; FOX, ADRIAN C.

THIS PUBLICATION WAS PREPARED BY THE SOIL CONSERVATION SERVICE FOR USE WITH YOUTH GROUPS. VARIOUS ACTIVITIES AND PROJECTS ARE PRESENTED WHICH CAN BE USED TO DEVELOP CONCEPTS ABOUT SOIL AND WATER CONSERVATION. IN ORDER TO SIMPLIFY THE PROCESS OF DEMONSTRATING THESE ACTIVITIES, MANY OF THE CONCEPTS ARE PICTORIALLY ILLUSTRATED. THE ACTIVITIES…

Nutrient Uptake and Use Efficiency by Tropical Legume Cover Crops at varying pH of an Oxisol

USDA-ARS?s Scientific Manuscript database

Oxisols comprise large soil group in tropical America. These soils are acidic and having low fertility. Use of tropical legume cover crops in cropping systems is an important strategy to improve fertility of these soils for sustainable crop production. Data are limited on nutrient uptake and use ef...

Farmer Perceptions of Soil and Water Conservation Issues: Implications to Agricultural and Extension Education.

ERIC Educational Resources Information Center

Bruening, Thomas H.; Martin, Robert A.

A sample of 731 farmers was surveyed to identify perceptions regarding selected soil and water conservation practices. The sample was stratified and proportioned by conservation district to have a representative group of respondents across Iowa. Items on the mailed questionnaire were designed to assess perceptions regarding issues in soil and…

Subsidence of residual soils in a karst terrain

DOE Office of Scientific and Technical Information (OSTI.GOV)

Drumm, E.C.; Kane, W.F.; Ben-Hassine, J.

1990-06-01

Siting and operating landfills for solid waste disposal in eastern Tennessee that can operate with minimum impact on groundwater is problematic. The operational requirement of thick, excavational soils and the regulatory requirement of a buffer between disposal units and an aquifer result in siting most operating East Tennessee landfills in outcrop areas of the Knox Group. However, the common occurrence of karst terrain and sinkholes in the Knox Group indicates the vulnerability of such sites to rapid groundwater recharge and flow and the potential for subsidence or collapse of soil into bedrock cavities. To address the potential for subsidence ormore » collapse of soils at the East Chestnut Ridge site on the Department of Energy's (DOE) Oak Ridge Reservation (ORR), the following activities and analyses were completed: The locations of karst features on the site were determined by field reconnaissance; several sinkholes were selected for detailed examination; soil boring, sampling, and physical testing were performed in soils located within, adjacent to, and outside of sinkholes to characterize soil strength at various depths; detailed plane surveys were made for 11 sinkholes to measure accurately their dimension and shape for use in determining profile functions for subsidence basins at the site; The stress-deformation response of a typical soil profile overlying a hypothetical bedrock cavity was analyzed numerically for a range of soil thickness and a range of cavity radii. A consistent estimate of the relationship between subsidence basin dimension, soil thickness, and cavity radius has been derived. 30 refs., 41 figs., 7 tabs.« less

Global Soil and Sediment transfer during the Anthropocene

NASA Astrophysics Data System (ADS)

Hoffmann, Thomas; Vanacker, Veerle; Stinchcombe, Gary; Penny, Dan; Xixi, Lu

2016-04-01

The vulnerability of soils to human-induced erosion and its downstream effects on fluvial and deltaic ecosystems is highly variable in space and time; dependent on climate, geology, the nature and duration of land use, and topography. Despite our knowledge of the mechanistic relationships between erosion, sediment storage, land-use and climate change, the global patterns of soil erosion, fluvial sediment flux and storage throughout the Holocene remain poorly understood. The newly launched PAGES working group GloSS aims to determine the sensitivity of soil resources and sediment routing systems to varying land use types during the period of agriculture, under contrasting climate regimes and socio-ecological settings. Successfully addressing these questions in relation to the sustainable use of soils, sediments and river systems requires an understanding of past human-landscape interactions. GloSS, therefore, aims to: Develop proxies for, or indices of, human impact on rates of soil erosion and fluvial sediment transfer that are applicable on a global scale and throughout the Holocene; Create a global database of long-term (102-104 years) human-accelerated soil erosion and sediment flux records; Identify hot spots of soil erosion and sediment deposition during the Anthropocene, and Locate data-poor regions where particular socio-ecological systems are not well understood, as strategic foci for future work. This paper will present the latest progress of the PAGES GloSS working group.

Evaluation of landscape coverings to reduce soil lead hazards in urban residential yards: The Safer Yards Project.

PubMed

Binns, Helen J; Gray, Kimberly A; Chen, Tianyue; Finster, Mary E; Peneff, Nicholas; Schaefer, Peter; Ovsey, Victor; Fernandes, Joyce; Brown, Mavis; Dunlap, Barbara

2004-10-01

This study was designed primarily to evaluate the effectiveness of landscape coverings to reduce the potential for exposure to lead-contaminated soil in an urban neighborhood. Residential properties were randomized in to three groups: application of ground coverings/barriers plus placement of a raised garden bed (RB), application of ground coverings/barriers only (no raised bed, NRB), and control. Outcomes evaluated soil lead concentration (employing a weighting method to assess acute hazard soil lead [areas not fully covered] and potential hazard soil lead [all soil surfaces regardless of covering status]), density of landscape coverings (6 = heavy, > 90% covered; 1 = bare, < 10% covered), lead tracked onto carpeted entryway floor mats, and entryway floor dust lead loadings. Over 1 year, the intervention groups had significantly reduced acute hazard soil lead concentration (median change: RB, -478 ppm; NRB, -698 ppm; control, +52 ppm; Kruskal-Wallis, P = 0.02), enhanced landscape coverings (mean change in score: RB, +0.6; NRB, +1.5; control, -0.6; ANOVA, P < 0.001), and a 50% decrease in lead tracked onto the floor mats. The potential hazard soil lead concentration and the entryway floor dust lead loading did not change significantly. Techniques evaluated by this study are feasible for use by property owners but will require continued maintenance. The long-term sustainability of the method needs further examination.

A process-based framework for soil ecosystem services study and management.

PubMed

Su, Changhong; Liu, Huifang; Wang, Shuai

2018-06-15

Soil provides various indispensable ecosystem services for human society. Soil's complex structure and property makes the soil ecological processes complicated and brings about tough challenges for soil ecosystem services study. Most of the current frameworks on soil services focus exclusively on services per se, neglecting the links and underlying ecological mechanisms. This article put forward a framework on soil services by stressing the underlying soil mechanisms and processes, which includes: 1) analyzing soil natural capital stock based on soil structure and property, 2) disentangling the underlying complex links and soil processes, 3) soil services valuation based on field investigation and spatial explicit models, and 4) enacting soil management strategy based on soil services and their driving factors. By application of this framework, we assessed the soil services of sediment retention, water yield, and grain production in the Upper-reach Fenhe Watershed. Based on the ecosystem services and human driving factors, the whole watershed was clustered into five groups: 1) municipal area, 2) typical coal mining area, 3) traditional farming area, 4) unsustainable urbanizing area, and 5) ecological conservation area. Management strategies on soils were made according to the clustering based soil services and human activities. Copyright © 2018 Elsevier B.V. All rights reserved.

Quantitative Relationship of Soil Texture with the Observed Population Density Reduction of Heterodera glycines after Annual Corn Rotation in Nebraska

PubMed Central

Pérez-Hernández, Oscar; Giesler, Loren J.

2014-01-01

Soil texture has been commonly associated with the population density of Heterodera glycines (soybean cyst nematode: SCN), but such an association has been mainly described in terms of textural classes. In this study, multivariate analysis and a generalized linear modeling approach were used to elucidate the quantitative relationship of soil texture with the observed SCN population density reduction after annual corn rotation in Nebraska. Forty-five commercial production fields were sampled in 2009, 2010, and 2011 and SCN population density (eggs/100 cm3 of soil) for each field was determined before (Pi) and after (Pf) annual corn rotation from ten 3 × 3-m sampling grids. Principal components analysis revealed that, compared with silt and clay, sand had a stronger association with SCN Pi and Pf. Cluster analysis using the average linkage method and confirmed through 1,000 bootstrap simulations identified two groups: one corresponding to predominant silt-and-clay fields and other to sand-predominant fields. This grouping suggested that SCN relative percent population decline was higher in the sandy than in the silt-and-clay predominant group. However, when groups were compared for their SCN population density reduction using Pf as the response, Pi as a covariate, and incorporating the year and field variability, a negative binomial generalized linear model indicated that the SCN population density reduction was not statistically different between the sand-predominant field group and the silt-and-clay predominant group. PMID:24987160

The influence of land-use and land-management on Soil Organic Carbon concentrations: Limitations of making predictions using only soil order data

NASA Astrophysics Data System (ADS)

Bell, M. J.; Worrall, F.

2009-04-01

In light of recent concern over the extent of global warming and the role of soil carbon as a potential store of atmospheric carbon, there is increasing demand for regions to estimate their current soil organic carbon (SOC) stocks with the greatest possible accuracy. Several previous attempts at calculating SOC baselines at global, national or regional scale have used mean values for soil orders and multiplied these values by the mapped areas of the soils they represent. Other methods have approached the task from a land cover point of view, making estimates using only land-use, or soil order/land-use combinations and others have included variables such as altitude, climate and soil texture. This study aimed to assess the major controls on SOC concentrations (%SOC) at the National Trust Wallington estate in Northumberland, NE England (area = 55km2) where an extensive soil sampling campaign was used to test what level of accuracy could be achieved in modelling the %SOC values on the Estate. Mapped %SOC values were compared to the values predicted from The National Soils Resources Institute (NSRI) representative soil profile data for major soil group, soil series and land-use corrected soil series values, as well as land-use/major soil group combinations from the Countryside Survey database. The results of this study can be summarised as follows: When only soil series or land-use were used as predictors only 48% and 44% of the variation in the dataset were explained. When soil series/land-use combinations were used explanatory power increased to 57% both altitude and soil pH are major controls on %SOC and including these variables gave an improvement to 59% A further improvement from 59% to 66% in the ability to predict %SOC levels at point locations when farm tenancy was included indicates that differences in land-management practices between farm tenancies explained more of the variation than either soil series or land-use in %SOC. Further work will involve a verification site in another area of the UK where the results of this sampling campaign will be used to confirm the greater predictive value of using land-use and management information in combination with soil series in correctly identifying %SOC at specific locations.

The Importance of CO2 Utilizing Chemolithoautotrophic Microorganisms for Carbon Sequestration and Isotope Signatures of SOM in Tropical Rainforest Soils

NASA Astrophysics Data System (ADS)

Nowak, M. E.; Behrendt, T.; Quesada, B.; Yanez Serrano, A. M.; Trumbore, S.

2015-12-01

Soil organic matter (SOM) is a major compartment of the tropical carbon cycle with up to 26 % of global carbon stocks stored in tropical soils. Understanding factors and processes driving SOM dynamics under changing climate conditions is crucial for predicting the role of tropical forest ecosystems to act as a carbon sink or source. Soil microorganisms are major drivers of the belowground carbon cycle by releasing CO2 by soil respiration but also by stabilizing and storing SOM, as indicated by recent research. Our investigations focus on chemolithoautotrophic microorganisms, a group that relies on CO2 as their carbon source. Chemolithoautotrophic microorganisms have been shown to be highly abundant in soils, whereas their role in SOM sequestration is still poorly understood. In tropical soils, the activity of chemolithoautotropic microbes might be important for generating and stabilizing carbon, especially in the deeper soil, which is rich in CO2 and reduced energy sources like Fe2+. They further might impact carbon isotope signatures (13C and 14C) of SOM, because of enzymatic fractionation during carboxylation and the use of carbon, which has a distinct isotopic composition than other carbon sources at the same depth. In order to study the activity of chemolithoautotropic microbes and their importance for SOM, we conducted isotope and isotope-labelling studies, gas measurements as well as molecular analyses at soils from the Atto site from 0 to 1 meter depth. These soils are classified as Ferralsols and Alisols and represent the most abundant soil types in the Amazon. With this we will be able to gain knowledge about the function and identity of an important group of microorganisms and their contribution to crucial biogeochemical cycles in the world`s most important ecosystem.

Representing life in the Earth system with soil microbial functional traits in the MIMICS model

NASA Astrophysics Data System (ADS)

Wieder, W. R.; Grandy, A. S.; Kallenbach, C. M.; Taylor, P. G.; Bonan, G. B.

2015-06-01

Projecting biogeochemical responses to global environmental change requires multi-scaled perspectives that consider organismal diversity, ecosystem processes, and global fluxes. However, microbes, the drivers of soil organic matter decomposition and stabilization, remain notably absent from models used to project carbon (C) cycle-climate feedbacks. We used a microbial trait-based soil C model with two physiologically distinct microbial communities, and evaluate how this model represents soil C storage and response to perturbations. Drawing from the application of functional traits used to model other ecosystems, we incorporate copiotrophic and oligotrophic microbial functional groups in the MIcrobial-MIneral Carbon Stabilization (MIMICS) model; these functional groups are akin to "gleaner" vs. "opportunist" plankton in the ocean, or r- vs. K-strategists in plant and animal communities. Here we compare MIMICS to a conventional soil C model, DAYCENT (the daily time-step version of the CENTURY model), in cross-site comparisons of nitrogen (N) enrichment effects on soil C dynamics. MIMICS more accurately simulates C responses to N enrichment; moreover, it raises important hypotheses involving the roles of substrate availability, community-level enzyme induction, and microbial physiological responses in explaining various soil biogeochemical responses to N enrichment. In global-scale analyses, we show that MIMICS projects much slower rates of soil C accumulation than a conventional soil biogeochemistry in response to increasing C inputs with elevated carbon dioxide (CO2) - a finding that would reduce the size of the land C sink estimated by the Earth system. Our findings illustrate that tradeoffs between theory and utility can be overcome to develop soil biogeochemistry models that evaluate and advance our theoretical understanding of microbial dynamics and soil biogeochemical responses to environmental change.

DNA methylation and methylation polymorphism in ecotypes of Jatropha curcas L. using methylation-sensitive AFLP markers.

PubMed

Mastan, Shaik G; Rathore, Mangal S; Bhatt, Vacha D; Chikara, J; Ghosh, A

2014-12-01

We investigated DNA methylation and polymorphism in the methylated DNA using AFLP based methylation-sensitive amplification polymorphism (MS-AFLP) markers in ecotypes of Jatropha curcas L. growing in similar and different geo-ecological conditions. Three ecotypes growing in different geo-ecological conditions with environmental heterogeneity (Group-1) and five ecotypes growing in similar environmental conditions (Group-2) were assessed. In ecotypes growing in group-1, 44.32 % DNA was methylated and of which 93.59 % DNA was polymorphic. While in group-2, 32.27 % DNA was methylated, of which 51.64 % DNA was polymorphic. In site 1 and site 2 of group-1, overall methylation was 18.94 and 22.44 % respectively with difference of 3.5 %, while overall polymorphism was 41.14 and 39.23 % with a difference of 1.91 %. In site 1 and site 2 of group-2, overall methylation was 24.68 and 24.18 % respectively with difference of 0.5 %, while overall polymorphism was 12.19 and 12.65 % with a difference of 0.46 %. The difference of methylation percentage and percentage of methylation polymorphism throughout the genome of J. curcas at site 1 and 2 of group-1 is higher than that of J. curcas at site 1 and 2 of group-2. These results correlated the physico-chemical properties of soil at these sites. The variations of physico-chemical properties of soil at Chorwadla (site 1 in group-1 and site 2 in group-2) compared to the soil at Brahmapur (site 2 in group-1) is higher than that of soil at Neswad (site 1 in group-2). The study suggests that these homologous nucleotide sequences probably play important role in ecotype adaptation to environmental heterogeneity by creating epiallelic variations hence in evolution of ecotypes/clines or forms of species showing phenotypic/genotypic differences in different geographical areas.

A regional soil and sediment geochemical study in northern California

USGS Publications Warehouse

Goldhaber, M.B.; Morrison, J.M.; Holloway, J.M.; Wanty, R.B.; Helsel, D.R.; Smith, D.B.

2009-01-01

Regional-scale variations in soil geochemistry were investigated in a 20,000-km2 study area in northern California that includes the western slope of the Sierra Nevada, the southern Sacramento Valley and the northern Coast Ranges. Over 1300 archival soil samples collected from the late 1970s to 1980 in El Dorado, Placer, Sutter, Sacramento, Yolo and Solano counties were analyzed for 42 elements by inductively coupled plasma-atomic emission spectrometry and inductively coupled plasma-mass spectrometry following a near-total dissolution. These data were supplemented by analysis of more than 500 stream-sediment samples from higher elevations in the Sierra Nevada from the same study site. The relatively high-density data (1 sample per 15 km2 for much of the study area) allows the delineation of regional geochemical patterns and the identification of processes that produced these patterns. The geochemical results segregate broadly into distinct element groupings whose distribution reflects the interplay of geologic, hydrologic, geomorphic and anthropogenic factors. One such group includes elements associated with mafic and ultramafic rocks including Cr, Ni, V, Co, Cu and Mg. Using Cr as an example, elevated concentrations occur in soils overlying ultramafic rocks in the foothills of the Sierra Nevada (median Cr = 160 mg/kg) as well as in the northern Coast Ranges. Low concentrations of these elements occur in soils located further upslope in the Sierra Nevada overlying Tertiary volcanic, metasedimentary and plutonic rocks (granodiorite and diorite). Eastern Sacramento Valley soil samples, defined as those located east of the Sacramento River, are lower in Cr (median Cr = 84 mg/kg), and are systematically lower in this suite compared to soils from the west side of the Sacramento Valley (median Cr = 130 mg/kg). A second group of elements showing a coherent pattern, including Ca, K, Sr and REE, is derived from relatively silicic rocks types. This group occurs at elevated concentrations in soils overlying volcanic and plutonic rocks at higher elevations in the Sierras (e.g. median La = 28 mg/kg) and the east side of the Sacramento Valley (median 20 mg/kg) compared to soils overlying ultramafic rocks in the Sierra Nevada foothills (median 15 mg/kg) and the western Sacramento Valley (median 14 mg/kg). The segregation of soil geochemistry into distinctive groupings across the Sacramento River arises from the former presence of a natural levee (now replaced by an artificial one) along the banks of the river. This levee has been a barrier to sediment transport. Sediment transport to the Valley by glacial outwash from higher elevations in the Sierra Nevada and, more recently, debris from placer Au mining has dominated sediment transport to the eastern Valley. High content of mafic elements (and low content of silicic elements) in surface soil in the west side of the valley is due to a combination of lack of silicic source rocks, transport of ultramafic rock material from the Coast Ranges, and input of sediment from the late Mesozoic Great Valley Group, which is itself enriched in mafic elements. A third group of elements (Zn, Cd, As and Cu) reflect the impact of mining activity. Soil with elevated content of these elements occurs along the Sacramento River in both levee and adjacent flood basin settings. It is interpreted that transport of sediment down the Sacramento River from massive sulfide mines in the Klamath Mountains to the north has caused this pattern. The Pb, and to some extent Zn, distribution patterns are strongly impacted by anthropogenic inputs. Elevated Pb content is localized in major cites and along major highways due to inputs from leaded gasoline. Zinc has a similar distribution pattern but the source is tire wear.

Experimental stations as a tool to teach soil science at the University of Valencia

NASA Astrophysics Data System (ADS)

Cerdà, Artemi

2010-05-01

This paper shows the strategies used at the University of Valencia (Department of Geography. Soil Erosion and Degradation Research Group) to teach soil science at the Geography and Enviromental Science Degrees. The use of the Montesa and El Teularet research stations contribute with a better knowledge on soil science for the students as they can see the measurements carried out in the field. Students visit the stations and contribute to measurements and sampling every season. The use of meteorological stations, erosion plots, soil moisture and soil temperatures probes, and sampling give the students the chances to understand the theoretical approach they use to have. This presentation will show how the students evolve, and how their knowledge in soil science is improved.

Linking soil bacterial biodiversity and soil carbon stability.

PubMed

Mau, Rebecca L; Liu, Cindy M; Aziz, Maliha; Schwartz, Egbert; Dijkstra, Paul; Marks, Jane C; Price, Lance B; Keim, Paul; Hungate, Bruce A

2015-06-01

Native soil carbon (C) can be lost in response to fresh C inputs, a phenomenon observed for decades yet still not understood. Using dual-stable isotope probing, we show that changes in the diversity and composition of two functional bacterial groups occur with this 'priming' effect. A single-substrate pulse suppressed native soil C loss and reduced bacterial diversity, whereas repeated substrate pulses stimulated native soil C loss and increased diversity. Increased diversity after repeated C amendments contrasts with resource competition theory, and may be explained by increased predation as evidenced by a decrease in bacterial 16S rRNA gene copies. Our results suggest that biodiversity and composition of the soil microbial community change in concert with its functioning, with consequences for native soil C stability.

Pyrosequence analysis of bacterial communities in aerobic bioreactors treating polycyclic aromatic hydrocarbon-contaminated soil

PubMed Central

Richardson, Stephen D.; Aitken, Michael D.

2011-01-01

Two aerobic, lab-scale, slurry-phase bioreactors were used to examine the biodegradation of polycyclic aromatic hydrocarbons (PAHs) in contaminated soil and the associated bacterial communities. The two bioreactors were operated under semi-continuous (draw-and-fill) conditions at a residence time of 35 days, but one was fed weekly and the other monthly. Most of the quantified PAHs, including high-molecular-weight compounds, were removed to a greater extent in the weekly-fed bioreactor, which achieved total PAH removal of 76%. Molecular analyses, including pyrosequencing of 16S rRNA genes, revealed significant shifts in the soil bacterial communities after introduction to the bioreactors and differences in the abundance and types of bacteria in each of the bioreactors. The weekly-fed bioreactor displayed a more stable bacterial community with gradual changes over time, whereas the monthly-fed bioreactor community was less consistent and may have been more strongly influenced by the influx of untreated soil during feeding. Phylogenetic groups containing known PAH-degrading bacteria previously identified through stable-isotope probing of the untreated soil were differentially affected by bioreactor conditions. Sequences from members of the Acidovorax and Sphingomonas genera, as well as the uncultivated ‘‘Pyrene Group 2’’ were abundant in the bioreactors. However, the relative abundances of sequences from the Pseudomonas, Sphingobium, and Pseudoxanthomonas genera, as well as from a group of unclassified anthracene degraders, were much lower in the bioreactors compared to the untreated soil. PMID:21369833

454 pyrosequencing analysis of bacterial diversity revealed by a comparative study of soils from mining subsidence and reclamation areas.

PubMed

Li, Yuanyuan; Chen, Longqian; Wen, Hongyu; Zhou, Tianjian; Zhang, Ting; Gao, Xiali

2014-03-28

Significant alteration in the microbial community can occur across reclamation areas suffering subsidence from mining. A reclamation site undergoing fertilization practices and an adjacent coal-excavated subsidence site (sites A and B, respectively) were examined to characterize the bacterial diversity using 454 high-throughput 16S rDNA sequencing. The dominant taxonomic groups in both the sites were Proteobacteria, Acidobacteria, Bacteroidetes, Betaproteobacteria, Actinobacteria, Gammaproteobacteria, Alphaproteobacteria, Deltaproteobacteria, Chloroflexi, and Firmicutes. However, the bacterial communities' abundance, diversity, and composition differed significantly between the sites. Site A presented higher bacterial diversity and more complex community structures than site B. The majority of sequences related to Proteobacteria, Gemmatimonadetes, Chloroflexi, Nitrospirae, Firmicutes, Betaproteobacteria, Deltaproteobacteria, and Anaerolineae were from site A; whereas those related to Actinobacteria, Planctomycetes, Bacteroidetes, Verrucomicrobia, Gammaproteobacteria, Nitriliruptoria, Alphaproteobacteria, and Phycisphaerae originated from site B. The distribution of some bacterial groups and subgroups in the two sites correlated with soil properties and vegetation due to reclamation practice. Site A exhibited enriched bacterial community, soil organic matter (SOM), and total nitrogen (TN), suggesting the presence of relatively diverse microorganisms. SOM and TN were important factors shaping the underlying microbial communities. Furthermore, the specific plant functional group (legumes) was also an important factor influencing soil microbial community composition. Thus, the effectiveness of 454 pyrosequencing in analyzing soil bacterial diversity was validated and an association between land ecological system restoration, mostly mediated by microbial communities, and an improvement in soil properties in coalmining reclamation areas was suggested.

Effects of Plant Functional Group Loss on Soil Microbial Community and Litter Decomposition in a Steppe Vegetation.

PubMed

Xiao, Chunwang; Zhou, Yong; Su, Jiaqi; Yang, Fan

2017-01-01

Globally, many terrestrial ecosystems are experiencing a rapid loss of biodiversity. Continued improvements in our understanding of interrelationships between plant diversity and soil microbes are critical to address the concern over the consequences of the decline in biodiversity on ecosystem functioning and services. By removing forbs, or grasses, or, to an extreme scenario, both forbs and grasses in a steppe vegetation in Inner Mongolia, we studied how plant functional group (PFG) loss affects soil microbial community composition using phospholipid fatty acid analysis (PLFA) and litter decomposition using a litter-bag method. PFG loss significantly decreased above- and below-ground plant biomass, soil microbial biomass carbon (SMBC) and nitrogen (SMBN), but had no effect on the ratio of SMBC to SMBN. Although the ratio of fungal to bacterial PLFAs remained unaffected, PFG loss significantly reduced the amount of bacterial, fungal, and total PLFAs. PFG loss decreased litter monthly mass loss and decay constant, and such decrease was significant when both forbs and grasses were removed. Our results provide robust evidence that PFG loss in grassland ecosystem can lead to a rapid response of soil microbial activity which may affect litter decomposition and soil nutrient cycling, suggesting that the assessment of plant-microbe interactions in soils is an integral component of ecosystem response to biodiversity loss.

Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters.

PubMed

de Menezes, Alexandre B; Prendergast-Miller, Miranda T; Richardson, Alan E; Toscas, Peter; Farrell, Mark; Macdonald, Lynne M; Baker, Geoff; Wark, Tim; Thrall, Peter H

2015-08-01

Network and multivariate statistical analyses were performed to determine interactions between bacterial and fungal community terminal restriction length polymorphisms as well as soil properties in paired woodland and pasture sites. Canonical correspondence analysis (CCA) revealed that shifts in woodland community composition correlated with soil dissolved organic carbon, while changes in pasture community composition correlated with moisture, nitrogen and phosphorus. Weighted correlation network analysis detected two distinct microbial modules per land use. Bacterial and fungal ribotypes did not group separately, rather all modules comprised of both bacterial and fungal ribotypes. Woodland modules had a similar fungal : bacterial ribotype ratio, while in the pasture, one module was fungal dominated. There was no correspondence between pasture and woodland modules in their ribotype composition. The modules had different relationships to soil variables, and these contrasts were not detected without the use of network analysis. This study demonstrated that fungi and bacteria, components of the soil microbial communities usually treated as separate functional groups as in a CCA approach, were co-correlated and formed distinct associations in these adjacent habitats. Understanding these distinct modular associations may shed more light on their niche space in the soil environment, and allow a more realistic description of soil microbial ecology and function. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

Understory herb layer exerts strong controls on soil microbial communities in subtropical plantations

NASA Astrophysics Data System (ADS)

Yin, Kai; Zhang, Lei; Chen, Dima; Tian, Yichen; Zhang, Feifei; Wen, Meiping; Yuan, Chao

2016-05-01

The patterns and drivers of soil microbial communities in forest plantations remain inadequate although they have been extensively studied in natural forest and grassland ecosystems. In this study, using data from 12 subtropical plantation sites, we found that the overstory tree biomass and tree cover increased with increasing plantation age. However, there was a decline in the aboveground biomass and species richness of the understory herbs as plantation age increased. Biomass of all microbial community groups (i.e. fungi, bacteria, arbuscular mycorrhizal fungi, and actinomycete) decreased with increasing plantation age; however, the biomass ratio of fungi to bacteria did not change with increasing plantation age. Variation in most microbial community groups was mainly explained by the understory herb (i.e. herb biomass and herb species richness) and overstory trees (i.e. tree biomass and tree cover), while soils (i.e. soil moisture, soil organic carbon, and soil pH) explained a relative low percentage of the variation. Our results demonstrate that the understory herb layer exerts strong controls on soil microbial community in subtropical plantations. These findings suggest that maintenance of plantation health may need to consider the management of understory herb in order to increase the potential of plantation ecosystems as fast-response carbon sinks.

Understory herb layer exerts strong controls on soil microbial communities in subtropical plantations

PubMed Central

Yin, Kai; Zhang, Lei; Chen, Dima; Tian, Yichen; Zhang, Feifei; Wen, Meiping; Yuan, Chao

2016-01-01

The patterns and drivers of soil microbial communities in forest plantations remain inadequate although they have been extensively studied in natural forest and grassland ecosystems. In this study, using data from 12 subtropical plantation sites, we found that the overstory tree biomass and tree cover increased with increasing plantation age. However, there was a decline in the aboveground biomass and species richness of the understory herbs as plantation age increased. Biomass of all microbial community groups (i.e. fungi, bacteria, arbuscular mycorrhizal fungi, and actinomycete) decreased with increasing plantation age; however, the biomass ratio of fungi to bacteria did not change with increasing plantation age. Variation in most microbial community groups was mainly explained by the understory herb (i.e. herb biomass and herb species richness) and overstory trees (i.e. tree biomass and tree cover), while soils (i.e. soil moisture, soil organic carbon, and soil pH) explained a relative low percentage of the variation. Our results demonstrate that the understory herb layer exerts strong controls on soil microbial community in subtropical plantations. These findings suggest that maintenance of plantation health may need to consider the management of understory herb in order to increase the potential of plantation ecosystems as fast-response carbon sinks. PMID:27243577

Understory herb layer exerts strong controls on soil microbial communities in subtropical plantations.

PubMed

Yin, Kai; Zhang, Lei; Chen, Dima; Tian, Yichen; Zhang, Feifei; Wen, Meiping; Yuan, Chao

2016-05-31

The patterns and drivers of soil microbial communities in forest plantations remain inadequate although they have been extensively studied in natural forest and grassland ecosystems. In this study, using data from 12 subtropical plantation sites, we found that the overstory tree biomass and tree cover increased with increasing plantation age. However, there was a decline in the aboveground biomass and species richness of the understory herbs as plantation age increased. Biomass of all microbial community groups (i.e. fungi, bacteria, arbuscular mycorrhizal fungi, and actinomycete) decreased with increasing plantation age; however, the biomass ratio of fungi to bacteria did not change with increasing plantation age. Variation in most microbial community groups was mainly explained by the understory herb (i.e. herb biomass and herb species richness) and overstory trees (i.e. tree biomass and tree cover), while soils (i.e. soil moisture, soil organic carbon, and soil pH) explained a relative low percentage of the variation. Our results demonstrate that the understory herb layer exerts strong controls on soil microbial community in subtropical plantations. These findings suggest that maintenance of plantation health may need to consider the management of understory herb in order to increase the potential of plantation ecosystems as fast-response carbon sinks.

Community composition and cellulase activity of cellulolytic bacteria from forest soils planted with broad-leaved deciduous and evergreen trees.

PubMed

Yang, Jiang-Ke; Zhang, Jing-Jing; Yu, Heng-Yu; Cheng, Jian-Wen; Miao, Li-Hong

2014-02-01

Cellulolytic bacteria in forest soil provide carbon sources to improve the soil fertility and sustain the nutrient balance of the forest ecological system through the decomposition of cellulosic remains. These bacteria can also be utilized for the biological conversion of biomass into renewable biofuels. In this study, the community compositions and activities of cellulolytic bacteria in the soils of forests planted with broad-leaved deciduous (Chang Qing Garden, CQG) and broad-leaved evergreen (Forest Park, FP) trees in Wuhan, China were resolved through restriction fragment length polymorphism (RFLP) and sequencing analysis of the 16S rRNA gene. All of the isolates exhibited 35 RFLP fingerprint patterns and were clustered into six groups at a similarity level of 50 %. The phylogeny analysis based on the 16S rRNA gene sequence revealed that these RFLP groups could be clustered into three phylogenetic groups and further divided into six subgroups at a higher resolution. Group I consists of isolates from Bacillus cereus, Bacillus subtilis complex (I-A) and from Paenibacillus amylolyticus-related complex (I-B) and exhibited the highest cellulase activity among all of the cellulolytic bacteria isolates. Cluster II consists of isolates belonging to Microbacterium testaceum (II-A), Chryseobacterium indoltheticum (II-B), and Flavobacterium pectinovorum and the related complex (II-C). Cluster III consists of isolates belonging to Pseudomonas putida-related species. The community shift with respect to the plant species and the soil properties was evidenced by the phylogenetic composition of the communities. Groups I-A and I-B, which account for 36.0 % of the cellulolytic communities in the CQG site, are the dominant groups (88.4 %) in the FP site. Alternatively, the ratio of the bacteria belonging to group III (P. putida-related isolates) shifted from 28.0 % in CQG to 4.0 % in FP. The soil nutrient analysis revealed that the CQG site planted with deciduous broad-leaved trees has a richer organic nutrient (total organic carbon and total nitrogen) than the FP site planted with evergreen broad-leaved trees. Against this background, the population density and the diversity of cellulolytic bacteria in the CQG site are clearly higher than those in the FP site, and the latter was dominated with high-cellulase-activity Bacillus- and Paenibacillus-related bacteria. The canonical correspondence analysis further indicated that the distribution of these groups is correlated with the FP site, whereas groups II and III are correlated with the organic nutrient-rich CQG site.

Magnetic and Geochemical Properties of Andic Soils from the Massif Central, France

NASA Astrophysics Data System (ADS)

Grison, H.; Petrovsky, E.; Dlouha, S.; Kapicka, A.

2014-12-01

Ferrimagnetic iron oxides are the key magnetic minerals responsible for enhancement of the magnetic susceptibility in soils. Soils with andic properties contain high amount of Fe-oxides, but only few attempts were made to characterize these soils using magnetic methods. Magnetic susceptibility is in particular suitable for its sensitivity and fast measurement; the presence of Fe-oxides can be easily identified directly in the field. The aim of our study is to describe main magnetic and geochemical properties of soils rich in Fe oxides derived from strongly magnetic volcanic basement. The studied sites are located at the basalt parent rock formed during Pleistocene, Pliocene and Miocene. Investigated soils are exposed to the mountainous climate with the perudic soil moisture regime and cryic temperature soil regime. Seven basalt soil profiles with typical andic properties were analyzed down to parent rock by a set of magnetic and geochemical methods. The magnetic susceptibility was measured in situ and in laboratory using the Bartington MS2D and AGICO MFK1. Its temperature dependence was measured in order to assess phase transformations of magnetic minerals using the KLY4. Magnetic data were completed by the hysteresis, IRM and DCD measurements using ADE EV9 VSM. Geochemical data include soil reaction (pH), organic carbon, cations exchange capacity, and extractable iron and aluminium in the soil extracted by a dithionite-citrate, acid-ammonium oxalate and a pyrophosphate solution. Scanning electron microscopy was done for top/sub-soil and rock samples. Geochemical soil properties reflecting iron oxide stability correlate well with mass-specific magnetic susceptibility. Well pronounced relationship was observed between magnetic grain size, precipitation and soil pH, second group is reflecting concentration of feri-magnetic particles and age of parent rock, and the third group reflects degree of weathering and the thermomagnetic indices expressing changes in magneto-mineralogy along the soil profiles. Influence of the weathering processes on all the measured parameters is discussed. Soil genesis is influenced by several factors, where the moisture is more important than the age of the parent material. Acknowledgement: This study was supported by Czech Science Foundation through grant No 13-10775S.

Variations in bacterial and fungal community composition along the soil depth profiles determined by pyrosequencing

NASA Astrophysics Data System (ADS)

Ko, D.; Yoo, G.; Jun, S. C.; Yun, S. T.; Chung, H.

2015-12-01

Soil microorganisms play key roles in nutrient cycling, and are distributed throughout the soil profile. Currently, there is little information about the characteristics of the microbial communities along the soil depth because most studies focus on microorganisms inhabiting the soil surface. To better understand the functions and composition of microbial communities and the biogeochemical factors that shape them at different soil depth, we analyzed soil microbial activities and bacterial and fungal community composition in a soil profile of a fallow field located in central Korea. Soil samples were taken using 120-cm soil cores. To analyze the composition of bacterial and fungal communities, barcoded pyrosequnecing analysis of 16S rRNA genes (bacteria) and ITS region (fungi) was conducted. Among the bacterial groups, the abundance of Proteobacteria (38.5, 23.2, 23.3, 26.1 and 17.5%, at 15-, 30-, 60-, 90-, and 120-cm depth, respectively) and Firmicutes (12.8, 11.3, 8.6, 4.3 and 0.4%, at 15-, 30-, 60-, 90-, and 120-cm depth, respectively) decreased with soil depth. On the other hand, the abundance of Ascomycota (51.2, 48.6, 65.7, 46.1, and 45.7%, at 15-, 30-, 60-, 90-, and 120-cm depth, respectively), a dominant fungal group at this site, showed no significant difference along the soil profile. To examine the vertical difference of microbial activities, activity of five extracellular enzymes that take part in cycling of C, N, and P in soil ecosystems, beta-1,4-glucosidase, cellobiohydrolase, beta-1,4-xylosidase, beta-1,4-N-acetylglucosaminidase, and acid phosphatase were analyzed. The soil enzyme activity declined with soil depth. For example, acid phosphatase activity was 88.5 (± 14.6 (± 1 SE)), 30.0 (± 5.9), 18.0 (± 3.5), 14.1 (± 3.7), and 10.7 (± 3.8) nmol g-1 hr-1, at 15-, 30-, 60-, 90-, and 120-cm depth, respectively. These metagenomics studies, along with other studies on microbial functions, are expected to enhance our understanding on the complexity of soil microbial communities and their relationship with biogeochemical factors.

Effects of Growth Medium, Inoculum Size, and Incubation Time on Culturability and Isolation of Soil Bacteria

PubMed Central

Davis, Kathryn E. R.; Joseph, Shayne J.; Janssen, Peter H.

2005-01-01

Soils are inhabited by many bacteria from phylogenetic groups that are poorly studied because representatives are rarely isolated in cultivation studies. Part of the reason for the failure to cultivate these bacteria is the low frequency with which bacterial cells in soil form visible colonies when inoculated onto standard microbiological media, resulting in low viable counts. We investigated the effects of three factors on viable counts, assessed as numbers of CFU on solid media, and on the phylogenetic groups to which the isolated colony-forming bacteria belong. These factors were inoculum size, growth medium, and incubation time. Decreasing the inoculum size resulted in significant increases in the viable count but did not appear to affect colony formation by members of rarely isolated groups. Some media that are traditionally used for soil microbiological studies returned low viable counts and did not result in the isolation of members of rarely isolated groups. Newly developed media, in contrast, resulted in high viable counts and in the isolation of many members of rarely isolated groups, regardless of the inoculum size. Increased incubation times of up to 3 months allowed the development of visible colonies of members of rarely isolated groups in conjunction with the use of appropriate media. Once isolated, pure cultures of members of rarely isolated groups took longer to form visible colonies than did members of commonly isolated groups. Using these new media and extended incubation times, we were able to isolate many members of the phyla Acidobacteria (subdivisions 1, 2, 3, and 4), Gemmatimonadetes, Chloroflexi, and Planctomycetes (including representatives of the previously uncultured WPS-1 lineage) as well as members of the subclasses Rubrobacteridae and Acidimicrobidae of the phylum Actinobacteria. PMID:15691937

Characterization of adsorption and degradation of diuron in carbonatic and noncarbonatic soils.

PubMed

Kasozi, Gabriel N; Nkedi-Kizza, Peter; Agyin-Birikorang, Sampson; Zimmerman, Andrew R

2010-01-27

The adsorption and degradation of the pesticide diuron in carbonatic and noncarbonatic soils were investigated to better understand the fate and transport of diuron in the environment. Batch adsorption experiments yielded isotherms that were well-described by the linear model. Adsorption coefficients normalized to soil organic carbon content (K(oc)) were lowest for carbonatic soils, averaging 259 +/- 48 (95% CI), 558 +/- 109, 973 +/- 156, and 2090 +/- 1054 for carbonatic soils, Histosols, Oxisols, and Spodosols, respectively. In addition, marl-carbonatic soils had much lower K(oc) values (197 +/- 27) than nonmarl-carbonatic soils. Diuron degradation data fit a first-order reaction kinetics model, yielding half-lives in soils ranging from 40 to 267 days. There was no significant difference between the average diuron degradation rate coefficients of each of the soil groups studied. Given the low adsorption capacity of carbonatic soils, it may be advisable to lower herbicide application rates in agricultural regions with carbonatic soils such as southern Florida to protect aquatic ecosystems and water quality.

Soil-geographical and ecological tour in West-Russia: 20 years anniversary

NASA Astrophysics Data System (ADS)

Kuzyakov, Yakov

2013-04-01

Soil-geographical and agro-ecological tour in Russia celebrated in this summer its 20 years anniversary! More than 800 students, PhD students and researcher from Germany, Switzerland, Austria, Sweden and France participated at the tour since 1993. The majority of the participants were students studying soil science, geoecology, geography, agriculture and ecology. The tour is based on a classical Russian zonal approach: a cross-section of climatic zones starting from south taiga, through deciduous forest, forest steppe, steppe, dry steppe, to semi dessert and transition to the desert zone. In each zone the specifics of climate, vegetation, nutrient cycling, and of course soil genesis as well as soil use by forestry and agriculture are described. Half of the soil group units of WRB classification (2006) are presented on about 35 soil profile pits and are described with focus on pedogenic processes and soil forming factors. The following soil groups are described in details by horizons according to WRB soil classification (2006): Arenosols, Podzols, Albeluvisols Histosols, Gleysols, Luvisols, Phaeozems, Chernozems, Kastanozems, Calcisols, Vertisols, Leptosols, Fluvisols, Solonetzes, Solonchaks. In addition to natural conditions, large-scale experiments designing agricultural landscapes (stone steppe), biosphere reserves and conservation areas (Tula-Schneisen, Divnogor'je, Baskunchak), as well as collective agricultural farms (previously kolkhoz) are visited to evaluate the anthropogenic effects on ecosystems and especially on soils. The 2.5 weeks bus journey through many villages and small towns, visits of museums and historical monuments, introduction in the settlement development of different regions provide a broad presentation of Russian history, traditions, life style, and contemporary state. So, combination of very diverse educational part focused on soil and environmental conditions with anthropogenic impacts and local history as well as recent socioeconomic developments make the tour unique and very attractive for BSc and MSc students and soil science professionals. Detailed information about the next tour is under: www.uni-goettingen.de/soilrus

Soil Organic Carbon Loss: An Overlooked Factor in the Carbon Sequestration Potential of Enhanced Mineral Weathering

NASA Astrophysics Data System (ADS)

Dietzen, Christiana; Harrison, Robert

2016-04-01

Weathering of silicate minerals regulates the global carbon cycle on geologic timescales. Several authors have proposed that applying finely ground silicate minerals to soils, where organic acids would enhance the rate of weathering, could increase carbon uptake and mitigate anthropogenic CO2 emissions. Silicate minerals such as olivine could replace lime, which is commonly used to remediate soil acidification, thereby sequestering CO2 while achieving the same increase in soil pH. However, the effect of adding this material on soil organic matter, the largest terrestrial pool of carbon, has yet to be considered. Microbial biomass and respiration have been observed to increase with decreasing acidity, but it is unclear how long the effect lasts. If the addition of silicate minerals promotes the loss of soil organic carbon through decomposition, it could significantly reduce the efficiency of this process or even create a net carbon source. However, it is possible that this initial flush of microbial activity may be compensated for by additional organic matter inputs to soil pools due to increases in plant productivity under less acidic conditions. This study aimed to examine the effects of olivine amendments on soil CO2 flux. A liming treatment representative of typical agricultural practices was also included for comparison. Samples from two highly acidic soils were split into groups amended with olivine or lime and a control group. These samples were incubated at 22°C and constant soil moisture in jars with airtight septa lids. Gas samples were extracted periodically over the course of 2 months and change in headspace CO2 concentration was determined. The effects of enhanced mineral weathering on soil organic matter have yet to be addressed by those promoting this method of carbon sequestration. This project provides the first data on the potential effects of enhanced mineral weathering in the soil environment on soil organic carbon pools.

[Diversity of soil nematode communities in the subalpine and alpine forests of western Sichuan, China.

PubMed

Chen, Ya; Yang, Wan Qin; Wu, Fu Zhong; Yang, Fan; Lan, Li Ying; Liu, Yu Wei; Guo, Cai Hong; Tan, Bo

2017-10-01

In order to understand the diversity of soil nematodes in the subalpine/alpine forests of the eastern Qinghai-Tibet Plateau, soil nematodes in the primary forest, mixed forest and secondary forest of Abies faxoniana were extracted by elutriation and sugar-centrifugation method in July 2015, and the composition and structure characteristics of soil nematode communities were studied in the three forests at different altitudes. A total of 37950 soil nematodes were collected, which belonged to 20 families and 27 genera, and the mean density was 4217 ind·100 g -1 dry soil. Filenchus was the dominant genus in the primary forest, and Filenchus and Pararotylenchus in the mixed forest and secondary forest, respectively. The individual number of each dominant genus was significantly affected by forest type. All nematode individuals were classified into the four trophic groups of bacterivores, fungivores, plant-parasites and omnivore-predators. The fungivores were dominant in the primary and secondary forest and the bacterivores in the mixed forest. The number of soil nematode c-p (colonizer-persister) groups of c-p 1, c-p 2, c-p 3 and c-p 4 accounted for 6.1%, 51.1%, 30.0% and 12.7% of the total nematode abundance, respectively. The maturity index (MI), the total maturity index (∑MI) and the plant parasitic index (PPI) of soil nematodes decreased gradually with the increase of altitude. The nematode channel ratio in the mixed forest was higher than 0.5, but that in the primary forest and secondary forest was below 0.5. The forest type significantly affected the soil nematode maturity index and channel ratio, but the forest type, soil layer and their interaction had no significant effect on the diversity index. There were obvious diffe-rences in the composition, nutrient structure and energy flow channel of soil nematodes in the subalpine/alpine forests of western Sichuan, providing an important reference for understanding the function of soil nematodes in soil processes of this region.

Desert farming benefits from microbial potential in arid soils and promotes diversity and plant health.

PubMed

Köberl, Martina; Müller, Henry; Ramadan, Elshahat M; Berg, Gabriele

2011-01-01

To convert deserts into arable, green landscapes is a global vision, and desert farming is a strong growing area of agriculture world-wide. However, its effect on diversity of soil microbial communities, which are responsible for important ecosystem services like plant health, is still not known. We studied the impact of long-term agriculture on desert soil in one of the most prominent examples for organic desert farming in Sekem (Egypt). Using a polyphasic methodological approach to analyse microbial communities in soil as well as associated with cultivated plants, drastic effects caused by 30 years of agriculture were detected. Analysing bacterial fingerprints, we found statistically significant differences between agricultural and native desert soil of about 60%. A pyrosequencing-based analysis of the 16S rRNA gene regions showed higher diversity in agricultural than in desert soil (Shannon diversity indices: 11.21/7.90), and displayed structural differences. The proportion of Firmicutes in field soil was significantly higher (37%) than in the desert (11%). Bacillus and Paenibacillus play the key role: they represented 96% of the antagonists towards phytopathogens, and identical 16S rRNA sequences in the amplicon library and for isolates were detected. The proportion of antagonistic strains was doubled in field in comparison to desert soil (21.6%/12.4%); disease-suppressive bacteria were especially enriched in plant roots. On the opposite, several extremophilic bacterial groups, e.g., Acidimicrobium, Rubellimicrobium and Deinococcus-Thermus, disappeared from soil after agricultural use. The N-fixing Herbaspirillum group only occurred in desert soil. Soil bacterial communities were strongly driven by the a-biotic factors water supply and pH. After long-term farming, a drastic shift in the bacterial communities in desert soil was observed. Bacterial communities in agricultural soil showed a higher diversity and a better ecosystem function for plant health but a loss of extremophilic bacteria. Interestingly, we detected that indigenous desert microorganisms promoted plant health in desert agro-ecosystems.

Comparison of Paenibacillus azotofixans Strains Isolated from Rhizoplane, Rhizosphere, and Non-Root-Associated Soil from Maize Planted in Two Different Brazilian Soils

PubMed Central

Seldin, Lucy; Rosado, Alexandre Soares; da Cruz, Davi William; Nobrega, Alberto; van Elsas, Jan Dirk; Paiva, Edilson

1998-01-01

Paenibacillus azotofixans is a nitrogen-fixing bacterium often found in soil and in the rhizospheres of different grasses. In this study, two Brazilian clay soils were planted with cross-hybrid maize (BR-201) and four stages of plant growth were analyzed to characterize the P. azotofixans populations present in the rhizoplanes, rhizospheres, and non-root-associated soils (herein called nonrhizospheres). A total of 106 strains were isolated and identified as P. azotofixans with an API 50CH kit, by classical biochemical tests, and via the use of specific primers based on the 16S rRNA gene in PCRs. To compare the isolated strains, phenotypic characteristics were determined and three different probes were used in hybridization experiments: two nif probes and one probe comprising a 0.58-kb fragment cloned from the P. azotofixans C3L4 genome. These results were used to construct a dendrogram, in which two main clusters could be observed. One cluster contained exclusively strains from Várzea soil, and the other contained the majority of strains from Cerrado soil. The 60 strains from Várzea soil and the 46 strains from Cerrado soil were further analyzed with REP and BOX primers, respectively. Based on the patterns obtained, it was possible to identify 21 different groups among strains from Várzea soil and 4 different groups among strains from Cerrado soil. These different patterns were tested by multivariate analysis of variance, and differences in the populations of P. azotofixans during the four stages of plant growth were demonstrated. Moreover, strains isolated from the rhizoplanes, rhizospheres, and nonrhizospheres of maize planted in Cerrado and Várzea soils were shown to be statistically different; the diversity of P. azotofixans strains was affected by the soil type. PMID:9758811

Water and soil biotic relations in Mercury distribution

NASA Technical Reports Server (NTRS)

Siegel, S. M.; Siegel, B. Z.; Puerner, N.; Speitel, T.; Thorarinsson, F.

1975-01-01

The distribution of Hg is considered both in terms of its availability in soil fractions and the relationship between Hg in plant samples and Hg in ambient soils or other supportive media. The plants were grouped by habitat into epipedic-epiphytic (mosses, lichens) and endopedic-aquatic-marine (Basidiomycetes and algae) samples; nonvascular and vascular forms were also distinguished. Sources included Alaska, Hawaii, New England and Iceland. Brief consideration was also given to Hg distribution in a plant-animal-soil community. Data were expressed in terms of plant Hg content and plant substratum concentration ratio. Average Hg contents and concentration ratios, and modal ranges for the ratios were determined. The results showed similar average Hg contents in all groups (126 to 199 ppb) but a low value (84 ppb) in the lichens; terrestrial forms had ratios of 3.5 to 7.6 whereas the marine algae yielded a figure of 78.7. A secondary mode in the range 0 to 0.1 appeared only in the Alaska-New England Group, over 500 km distant from active thermal sites. Evidence for both exclusion and concentration behavior was obtained.

Some History and Accomplishments of the IUSS

NASA Astrophysics Data System (ADS)

Brevik, Eric C.; Hartemink, Alfred E.

2013-04-01

The International Society of Soil Science (ISSS) was founded in 1924 in Rome, Italy, by European agro-geologists who were interested in establishing standardized methods of soil analysis and soil classification. It was admitted as a Union member of the International Council for Science (ICSU) in 1993 and was restructured into the International Union of Soil Sciences (IUSS) in 1998. The objectives of the IUSS are to promote all branches of soil science, and to support all soil scientists across the world in the pursuit of their activities. The IUSS has encouraged international exchanges of ideas and collaborations through the organization of international congresses, known as the World Congress of Soil Science. A total of 19 international congresses have been organized, with eight of these congresses held in Europe, five in the Americas, three in Asia, two in Australia, and one in Africa. The 20th congress will be held in Korea in 2014. The IUSS maintains a website (www.iuss.org) since 2001 with a variety of information about soils, publishes twice per year a Bulletin (since 1952) and publishes a monthly electronic newsletter (IUSS Alert) since 2005. The IUSS initiated the Soil Map of the World, which was prepared in the 1960s and 1970s and a whole range of other scientific initiatives, publications and cooperating journals. Divisions, commissions, working groups and standing committees have been established to deal with all aspects of soil science and its applications. There are four divisions (Division 1 - Soil in Space and Time, Division 2 - Soil properties and processes, Division 3 - Soil Use and Management, and Division 4 - The Role of Soils in Sustaining Society and the Environment). Each division is further divided into five or six commissions. In addition, there are eight active working groups (Acid Sulphate Soils, Cryosols, Digital Soil Mapping, International Actions for the Sustainable Use of Soils, Land Degradation, World Reference Base, Forest soils, and Urban Soils) and three standing committees (Committee on awards and prizes, Committee on budget and finances, and Committee on statutes and byelaws). Membership in ISSS/IUSS increased from around 550 after WWII to over 60,000 today. The IUSS also provides Honorary Membership to soil scientists who have significant accomplishments in the field; to date 87 soil scientists have been so recognized from all over the globe. The IUSS is the most important global link to the world's leading soil science and soil scientists.

The creation of digital thematic soil maps at the regional level (with the map of soil carbon pools in the Usa River basin as an example)

NASA Astrophysics Data System (ADS)

Pastukhov, A. V.; Kaverin, D. A.; Shchanov, V. M.

2016-09-01

A digital map of soil carbon pools was created for the forest-tundra ecotone in the Usa River basin with the use of ERDAS Imagine 2014 and ArcGIS 10.2 software. Supervised classification and thematic interpretation of satellite images and digital terrain models with the use of a georeferenced database on soil profiles were applied. Expert assessment of the natural diversity and representativeness of random samples for different soil groups was performed, and the minimal necessary size of the statistical sample was determined.

The impact of clearcutting in boreal forests of Russia on soils: A review

NASA Astrophysics Data System (ADS)

Dymov, A. A.

2017-07-01

Data on the impact of tree logging in boreal forests of Russia on soils are systematized. Patterns of soil disturbances and transformation of microclimatic parameters within clearcutting areas are discussed. Changes in the conditions of pedogenesis in secondary forests are analyzed. It is suggested that the changes in forest soils upon reforestation of clearcutting areas might be considered as specific post-logging soil successions. Data characterizing changes in the thickness of litter horizons and in the intensity of elementary pedogenic processes, acidity, and the content of exchangeable bases in soils of clearcutting areas in the course of their natural reforestation are considered. The examples of human-disturbed (turbated) soil horizons and newly formed anthropogenic soils on clearcutting areas are described. It is suggested that the soils on mechanically disturbed parts of clearcutting areas can be separated as a specific group of detritus turbozems.

Variation in woody plant mortality and dieback from severe drought among soils, plant groups, and species within a northern Arizona ecotone.

PubMed

Koepke, Dan F; Kolb, Thomas E; Adams, Henry D

2010-08-01

Vegetation change from drought-induced mortality can alter ecosystem community structure, biodiversity, and services. Although drought-induced mortality of woody plants has increased globally with recent warming, influences of soil type, tree and shrub groups, and species are poorly understood. Following the severe 2002 drought in northern Arizona, we surveyed woody plant mortality and canopy dieback of live trees and shrubs at the forest-woodland ecotone on soils derived from three soil parent materials (cinder, flow basalt, sedimentary) that differed in texture and rockiness. Our first of three major findings was that soil parent material had little effect on mortality of both trees and shrubs, yet canopy dieback of trees was influenced by parent material; dieback was highest on the cinder for pinyon pine (Pinus edulis) and one-seed juniper (Juniperus monosperma). Ponderosa pine (Pinus ponderosa) dieback was not sensitive to parent material. Second, shrubs had similar mortality, but greater canopy dieback, than trees. Third, pinyon and ponderosa pines had greater mortality than juniper, yet juniper had greater dieback, reflecting different hydraulic characteristics among these tree species. Our results show that impacts of severe drought on woody plants differed among tree species and tree and shrub groups, and such impacts were widespread over different soils in the southwestern U.S. Increasing frequency of severe drought with climate warming will likely cause similar mortality to trees and shrubs over major soil types at the forest-woodland ecotone in this region, but due to greater mortality of other tree species, tree cover will shift from a mixture of species to dominance by junipers and shrubs. Surviving junipers and shrubs will also likely have diminished leaf area due to canopy dieback.

Enrichment and geochemical mobility of heavy metals in bottom sediment of the Hoedong reservoir, Korea and their source apportionment.

PubMed

Lee, Pyeong-Koo; Kang, Min-Ju; Yu, Soonyoung; Ko, Kyung-Seok; Ha, Kyoochul; Shin, Seong-Cheon; Park, Jung Han

2017-10-01

Physicochemical characteristics of bottom sediment in the Hoedong reservoir were studied to evaluate the effectiveness of the reservoir as traps for trace metals. Roadside soil, stream sediment and background soil were also studied for comparison. Sequential extractions were carried out, and lead isotopic compositions of each extraction were determined to apportion Pb sources. Besides, particle size distribution of roadside soil, and metal concentrations and Pb isotopes of each size group were determined to characterize metal contamination. In result, Zn and Cu were enriched in sediment through roadside soil. The data on metal partitioning implied that Zn posed potential hazards for water quality. Meanwhile, the noticeable reduction of the 206 Pb/ 207 Pb isotopic ratio in the acid-soluble fraction in the size group 200 μm - 2 mm of national roadside soil indicated that this size group was highly contaminated by automotive emission with precipitation of acid-soluble secondary minerals during evaporation. Based on the Pb isotopic ratios, the dry deposition of Asian dust (AD) and non-Asian dust (NAD) affected roadside soil, while the effects of AD and NAD on bottom sediment appeared to be low given the low metal concentrations in sediment. Metal concentrations and Pb isotopic compositions indicated that sediments were a mixture of background and roadside soil. Source apportionment calculations showed that the average proportion of traffic Pb in bottom and stream sediments was respectively 34 and 31% in non-residual fractions, and 26 and 28% in residual fraction. The residual fraction of sediments appeared to be as contaminated as the non-residual fractions. Copyright © 2017 Elsevier Ltd. All rights reserved.

Terra e Arte Project: Soils connecting Art and Education

NASA Astrophysics Data System (ADS)

Muggler, Cristine Carole; Rozenberg, Bianca; de Cássia Francisco, Talita; Gramacho de Oliveira, Elisa

2015-04-01

The "Terra e Arte" project was designed to combine science and art by approaching soil contents in basic education schools in Viçosa, Minas Gerais, Brazil. The project was developed to awake, sensitize and create awareness about soils and their importance to life and environment within school communities. It was proposed and realized by the Earth Sciences Museum Alexis Dorofeef (MCTAD) of the Federal University of Viçosa (UFV), as part of the celebrations of its 20th anniversary. Since all the schools of the town visit the museum at least once a year and most of them have received and carried out pedagogic projects on soil themes in the last 20 years, it was proposed to them to develop a soil subject with any of their groups and combine it with painting using soil materials. Each group interested in joining the project received a basic set of material to produce soil paints. They were expected to develop a soil theme and its contents for a few weeks and to finalize it with a figurative and textual collective creation that synthetized their learning. 16 of the 24 visited schools joined the project and realized it for an average of two months. During this time, the school groups visited the museum and/or borrowed the itinerant exposition on soils from the museum to work with in in the school community. At the end of the projects, the productions were presented at the Knowledge Market (Feira do Conhecimento) that happens every year in the central square of the town, as part of the National Week of Science and Technology. At the event, 58 works were presented by 14 schools, involving directly 700 pupils and their teachers. They approached themes from soil formation and properties to agroecology and urban occupation and impacts on the soils. 30 of the works were selected for a commemorative exposition and 12 were chosen for a table calendar 2014. The movement created around the project mobilized many people and had strong impact on the school communities, especially after the distribution of the calendar to all schools. The result stimulated the museum to propose another project for the 21st anniversary that was intensely sought after by all schools of the town. The mobilization that has been created by those projects contributes to expand and to strengthen the word about soils within the schools and to increase the perception of soils in the town community.

Correlation of soil and sediment organic matter polarity to aqueous sorption of nonionic compounds

USGS Publications Warehouse

Kile, D.E.; Wershaw, R. L.; Chiou, C.T.

1999-01-01

Polarities of the soiL/sediment organic matter (SOM) in 19 soil and 9 freshwater sediment sam pies were determined from solid-state 13C-CP/MAS NMR spectra and compared with published partition coefficients (K(oc)) of carbon tetrachloride (CT) from aqueous solution. Nondestructive analysis of whole samples by solid-state NMR permits a direct assessment of the polarity of SOM that is not possible by elemental analysis. The percent of organic carbon associated with polar functional groups was estimated from the combined fraction of carbohydrate and carboxylamide-ester carbons. A plot of the measured partition coefficients (K(oc)) of carbon tetrachloride (CT) vs. percent polar organic carbon (POC) shows distinctly different populations of soils and sediments as well as a roughly inverse trend among the soil/sediment populations. Plots of K(oc) values for CT against other structural group carbon fractions did not yield distinct populations. The results indicate that the polarity of SOM is a significant factor in accounting for differences in K(oc) between the organic matter in soils and sediments. The alternate direct correlation of the sum of aliphatic and aromatic structural carbons with K(oc) illustrates the influence of nonpolar hydrocarbon on solute partition interaction. Additional elemental analysis data of selected samples further substantiate the effect of the organic matter polarity on the partition efficiency of nonpolar solutes. The separation between soil and sediment samples based on percent POC reflects definite differences of the properties of soil and sediment organic matters that are attributable to diagenesis.Polarities of the soil/sediment organic matter (SOM) in 19 soil and 9 freshwater sediment samples were determined from solid-state 13C-CP/MAS NMR spectra and compared with published partition coefficients (Koc) of carbon tetrachloride (CT) from aqueous solution. Nondestructive analysis of whole samples by solid-state NMR permits a direct assessment of the polarity of SOM that is not possible by elemental analysis. The percent of organic carbon associated with polar functional groups was estimated from the combined fraction of carbohydrate and carboxyl-amide-ester carbons. A plot of the measured partition coefficients (Koc) of carbon tetrachloride (CT) vs. percent polar organic carbon (POC) shows distinctly different populations of soils and sediments as well as a roughly inverse trend among the soil/sediment populations. Plots of Koc values for CT against other structural group carbon fractions did not yield distinct populations. The results indicate that the polarity of SOM is a significant factor in accounting for differences in Koc between the organic matter in soils and sediments. The alternate direct correlation of the sum of aliphatic and aromatic structural carbons with Koc illustrates the influence of nonpolar hydrocarbon on solute partition interaction. Additional elemental analysis data of selected samples further substantiate the effect of the organic matter polarity on the partition efficiency of nonpolar solutes. The separation between soil and sediment samples based on percent POC reflects definite differences of the properties of soil and sediment organic matters that are attributable to diagenesis.

Soil Moisture Workshop

NASA Technical Reports Server (NTRS)

Heilman, J. L. (Editor); Moore, D. G. (Editor); Schmugge, T. J. (Editor); Friedman, D. B. (Editor)

1978-01-01

The Soil Moisture Workshop was held at the United States Department of Agriculture National Agricultural Library in Beltsville, Maryland on January 17-19, 1978. The objectives of the Workshop were to evaluate the state of the art of remote sensing of soil moisture; examine the needs of potential users; and make recommendations concerning the future of soil moisture research and development. To accomplish these objectives, small working groups were organized in advance of the Workshop to prepare position papers. These papers served as the basis for this report.

Installation Restoration Program. Preliminary Assessment: Nevada Air National Guard, 152nd Tactical Reconnaissance Group (TRG), Reno Cannon International Airport, Reno, Nevada.*

DTIC Science & Technology

1989-01-01

survey for the southern part of Washoe Ccunty provides data on sane physical and chemical properties of soils . The data deteied to be pertinent to on...base soils is presented in Table 3, Physical and Chemical Properties of Soils Occrring on the NVANG Base in Reno, Nevada. Analyses of surface water and...NVANG Base . . . ...... .. . .. . . 111-6 3. Physical and Chemical Prperties of Soils Occrring on the NVANG Base in Reno, Nevada

EPA'S ECO-SSL WEB APPLICATION

EPA Science Inventory

The Ecological Soil Screening Level (Eco-SSL) work group, composed of scientists and risk assessors from EPA, Environment Canada, DOE, Army, Navy, Air Force, states, industry, academia, and consulting companies, has developed scientifically sound, ecologically-based, soil screeni...

Phytoremediation and Phytomining: Status and Promise

USDA-ARS?s Scientific Manuscript database

Phytoremediation of inorganics is comprised of technologies to protect the environment from contaminated soils. This broad group of technologies includes phytoextraction (removal from soil), phytomining (accumulating economic metal value in plant biomass) and phytostabilization (limiting plant meta...

The roles of nematodes in nitrogen and phosphorous availability, plant uptake and growth in organically amended soils

NASA Astrophysics Data System (ADS)

Gebremikael, Mesfin; Buchan, David; De Neve, Stefaan

2017-04-01

Several studies have shown that soil biota contributes significantly to the crucial ecosystem functions and services such as organic matter decomposition and nutrient cycling. The contribution of each group of soil organisms may vary depending primarily on their feeding behavior. The magnitude of the ecosystem services by the biota may also depend on the interactions amongst the soil biota groups and their surrounding environment, for instance, biochemical characteristics of the externally added organic material. However, only a few studies considered these interactions concurrently. Here, we investigated the effects of fauna-microbe-plant interactions on organic matter decomposition and nutrient cycling by applying different organic materials spanning a range of C:N ratios and presumed N availability. Nematodes were selected as model fauna because they are the most abundant soil metazoans that have a diversified feeding strategy and interact very intimately with microbes, other fauna, and plants. A series of incubation experiments were conducted in bare and planted microcosms under controlled conditions using fresh soil collected from an agricultural field and defaunated by gamma irradiation. In the first experiment without plants, the defaunated soil cores were either left unamended (UNA) or received lignin-rich low N compost (COI), N-rich compost (COV), fresh manure (MAN) or chopped clover (CLO). The entire free-living soil nematode community was extracted from unirradiated fresh soil and reinoculated into half of the soil cores that had been defaunated by gamma irradiation. Two treatments: with (+Nem) and without (-Nem) nematodes were compared for soil nitrogen and phosphorus availability, plant uptake, and PLFA signatures over time during a 105-days incubation. The same experimental setup was used to investigate further the CLO amendment in the presence of plants (rye grass was used as a model plant). Nematodes were extracted and assigned to feeding groups, and their contribution was calculated by simple differences between +Nem and Nem treatments. Nematode reinoculation generally increased the amount of N mineralized from the amendment in bare microcosms, the maximal mineralization being greater and occurring earlier for amendments with high bioavailable N (CLO and COV). Nematode reinoculation also clearly stimulated nitrification in all amendments. The abundance of both bacteria and fungi increased the most with MAN and CLO amendments which have the lowest C:N. In planted microcosms, nematodes increased net N mineralization and P availability by +25 and +23% respectively in CLO amended microcosms. Dry plant biomass and total PLFA concentration were also significantly higher during most of the incubation periods in +Nem compared to -Nem in CLO amended microcosms. Our results show that different functional groups of nematodes collectively exert significant influence on OM decomposition, nutrient availability and plant growth.

A method of site quality evaluation for red alder.

Treesearch

Constance A. Harrington

1986-01-01

A field guide to predict site index for red alder (Alnus rubra Bong.) was developed for use in western Washington and Oregon. The guide requires the user to evaluate 14 soil-site properties that are grouped into three general factors: (1) geographic and topographic position, (2) soil moisture and aeration during the growing season, and (3) soil fertility and physical...

Macroinvertebrates in North American tallgrass prairie soils: effects of fire, mowing, and fertilization on density and biomass

Treesearch

M.A. Callaham; J.M. Blair; T.C. Todd; D.J. Kitchen; M.R. Whiles

2003-01-01

The responses of tallgrass prairie plant communities and ecosystem processes to fire and grazing are well characterized. However, responses of invertebrate consumer groups. and particularly soil-dwelling organisms, to these disturbances are not well known. At Konza Prairie Biological Station. we sampled soil macroinvertebrates in 1994 and 1999 as part of a long-term...

Soils element history, sampling, analyses, and recommendations. [Plutonium isotopes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fowler, E.B.; Essington, E.H.

A five year history of the Soils Element of the Nevada Applied Ecology Group (NAEG) is presented. Major projects are reviewed. Emphasis is placed on mound studies and profile studies for the period March 1, 1975, through February 1, 1976. A series of recommendations is made relative to extensions of past efforts of the Soils Element of the NAEG.

Design of dry sand soil stratified sampler

NASA Astrophysics Data System (ADS)

Li, Erkang; Chen, Wei; Feng, Xiao; Liao, Hongbo; Liang, Xiaodong

2018-04-01

This paper presents a design of a stratified sampler for dry sand soil, which can be used for stratified sampling of loose sand under certain conditions. Our group designed the mechanical structure of a portable, single - person, dry sandy soil stratified sampler. We have set up a mathematical model for the sampler. It lays the foundation for further development of design research.

Changes in fungal communities along a boreal forest soil fertility gradient.

PubMed

Sterkenburg, Erica; Bahr, Adam; Brandström Durling, Mikael; Clemmensen, Karina E; Lindahl, Björn D

2015-09-01

Boreal forests harbour diverse fungal communities with decisive roles in decomposition and plant nutrition. Although changes in boreal plant communities along gradients in soil acidity and nitrogen (N) availability are well described, less is known about how fungal taxonomic and functional groups respond to soil fertility factors. We analysed fungal communities in humus and litter from 25 Swedish old-growth forests, ranging from N-rich Picea abies stands to acidic and N-poor Pinus sylvestris stands. 454-pyrosequencing of ITS2 amplicons was used to analyse community composition, and biomass was estimated by ergosterol analysis. Fungal community composition was significantly related to soil fertility at the levels of species, genera/orders and functional groups. Ascomycetes dominated in less fertile forests, whereas basidiomycetes increased in abundance in more fertile forests, both in litter and humus. The relative abundance of mycorrhizal fungi in the humus layer remained high even in the most fertile soils. Tolerance to acidity and nitrogen deficiency seems to be of greater importance than plant carbon (C) allocation patterns in determining responses of fungal communities to soil fertility, in old-growth boreal forests. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

H-binding of size- and polarity-fractionated soil and lignite humic acids after removal of metal and ash components.

PubMed

Drosos, Marios; Leenheer, Jerry A; Avgeropoulos, Apostolos; Deligiannakis, Yiannis

2014-03-01

A fractionation technique, combining dialysis removal of metal and ash components with hydrofluoric acid and pH 10 citrate buffer followed by chromatography of dialysis permeate on XAD-8 resin at decreasing pH values, has been applied to lignite humic acid (lignite-HA) and soil humic acid (soil-HA). H-binding data and non ideal competitive adsorption-Donnan model parameters were obtained for the HA fractions by theoretical analysis of H-binding data which reveal a significant increase of the carboxyl and the phenolic charge for the lignite-HA fractions vs. the parental lignite humic acid (LParentalHA). The fractionated lignite-HA material consisted mainly of permeate fractions, some of which were fulvic acid-like. The fractionated soil-HA material consisted mainly of large macromolecular structures that did not permeate the dialysis membrane during deashing. Chargeable groups had comparable concentrations in soil-HA fractions and parental soil humic acid (SParentalHA), indicating minimal interference of ash components with carboxyl and phenolic (and/or enolic) groups. Fractionation of HA, combined with theoretical analysis of H-binding, can distinguish the supramolecular vs. macromolecular nature of fractions within the same parental HA.

H-binding of size- and polarity-fractionated soil and lignite humic acids after removal of metal and ash components

USGS Publications Warehouse

Drosos, Marios; Leenheer, Jerry A.; Avgeropoulos, Apostolos; Deligiannakis, Yiannis

2014-01-01

A fractionation technique, combining dialysis removal of metal and ash components with hydrofluoric acid and pH 10 citrate buffer followed by chromatography of dialysis permeate on XAD-8 resin at decreasing pH values, has been applied to lignite humic acid (lignite-HA) and soil humic acid (soil-HA). H-binding data and non ideal competitive adsorption-Donnan model parameters were obtained for the HA fractions by theoretical analysis of H-binding data which reveal a significant increase of the carboxyl and the phenolic charge for the lignite-HA fractions vs. the parental lignite humic acid (LParentalHA). The fractionated lignite-HA material consisted mainly of permeate fractions, some of which were fulvic acid-like. The fractionated soil-HA material consisted mainly of large macromolecular structures that did not permeate the dialysis membrane during deashing. Chargeable groups had comparable concentrations in soil-HA fractions and parental soil humic acid (SParentalHA), indicating minimal interference of ash components with carboxyl and phenolic (and/or enolic) groups. Fractionation of HA, combined with theoretical analysis of H-binding, can distinguish the supramolecular vs. macromolecular nature of fractions within the same parental HA.

Spatial Prediction of Soil Classes by Using Soil Weathering Parameters Derived from vis-NIR Spectroscopy

NASA Astrophysics Data System (ADS)

Ramirez-Lopez, Leonardo; Alexandre Dematte, Jose

2010-05-01

There is consensus in the scientific community about the great need of spatial soil information. Conventional mapping methods are time consuming and involve high costs. Digital soil mapping has emerged as an area in which the soil mapping is optimized by the application of mathematical and statistical approaches, as well as the application of expert knowledge in pedology. In this sense, the objective of the study was to develop a methodology for the spatial prediction of soil classes by using soil spectroscopy methodologies related with fieldwork, spectral data from satellite image and terrain attributes in simultaneous. The studied area is located in São Paulo State, and comprised an area of 473 ha, which was covered by a regular grid (100 x 100 m). In each grid node was collected soil samples at two depths (layers A and B). There were extracted 206 samples from transect sections and submitted to soil analysis (clay, Al2O3, Fe2O3, SiO2 TiO2, and weathering index). The first analog soil class map (ASC-N) contains only soil information regarding from orders to subgroups of the USDA Soil Taxonomy System. The second (ASC-H) map contains some additional information related to some soil attributes like color, ferric levels and base sum. For the elaboration of the digital soil maps the data was divided into three groups: i) Predicted soil attributes of the layer B (related to the soil weathering) which were obtained by using a local soil spectral library; ii) Spectral bands data extracted from a Landsat image; and iii) Terrain parameters. This information was summarized by a principal component analysis (PCA) in each group. Digital soil maps were generated by supervised classification using a maximum likelihood method. The trainee information for this classification was extracted from five toposequences based on the analog soil class maps. The spectral models of weathering soil attributes shown a high predictive performance with low error (R2 0.71 to 0.90). The spatial prediction of these attributes also showed a high performance (validations with R2> 0.78). These models allowed to increase spatial resolution of soil weathering information. On the other hand, the comparison between the analog and digital soil maps showed a global accuracy of 69% for the ASC-N map and 62% in the ASC-H map, with kappa indices of 0.52 and 0.45 respectively.

Rhizobia from Lanzarote, the Canary Islands, that nodulate Phaseolus vulgaris have characteristics in common with LMW RNA group II Sinorhizobium meliloti of Medicago, Melilotus and Trigonella from soils of mainland Spain

USDA-ARS?s Scientific Manuscript database

Several isolates from nodules of Phaseolus vulgaris grown in soil of Lanzarote, an island of the Canaries, had electrophoretic LMW RNA patterns identical with a less common pattern within S. meliloti (assigned as group II) obtained from nodules of alfalfa and alfalfa-related legumes grown in northe...

Community structure and succession regulation of fungal consortia in the lignocellulose-degrading process on natural biomass.

PubMed

Tian, Baoyu; Wang, Chunxiang; Lv, Ruirui; Zhou, Junxiong; Li, Xin; Zheng, Yi; Jin, Xiangyu; Wang, Mengli; Ye, Yongxia; Huang, Xinyi; Liu, Ping

2014-01-01

The study aims to investigate fungal community structures and dynamic changes in forest soil lignocellulose-degrading process. rRNA gene clone libraries for the samples collected in different stages of lignocellulose degradation process were constructed and analyzed. A total of 26 representative RFLP types were obtained from original soil clone library, including Mucoromycotina (29.5%), unclassified Zygomycetes (33.5%), Ascomycota (32.4%), and Basidiomycota (4.6%). When soil accumulated with natural lignocellulose, 16 RFLP types were identified from 8-day clone library, including Basidiomycota (62.5%), Ascomycota (36.1%), and Fungi incertae sedis (1.4%). After enrichment for 15 days, identified 11 RFLP types were placed in 3 fungal groups: Basidiomycota (86.9%), Ascomycota (11.5%), and Fungi incertae sedis (1.6%). The results showed richer, more diversity and abundance fungal groups in original forest soil. With the degradation of lignocellulose, fungal groups Mucoromycotina and Ascomycota decreased gradually, and wood-rotting fungi Basidiomycota increased and replaced the opportunist fungi to become predominant group. Most of the fungal clones identified in sample were related to the reported lignocellulose-decomposing strains. Understanding of the microbial community structure and dynamic change during natural lignocellulose-degrading process will provide us with an idea and a basis to construct available commercial lignocellulosic enzymes or microbial complex.

Trophic position of soil nematodes in boreal forests as indicated by stable isotope analysis

NASA Astrophysics Data System (ADS)

Kudrin, Alexey; Tsurikov, Sergey

2016-04-01

Despite the well-developed trophic classification of soil nematodes, their position in soil food webs is still little understood. Observed deviations from the typical feeding strategy indicate that a simplified trophic classification probably does not fully reflect actual trophic interactions. Furthermore, the extent and functional significance of nematodes as prey for other soil animals remains unknown. Stable isotope analysis (SIA) is powerful tool for investigating the structure of soil food webs, but its application to the study of soil nematodes has been limited to only a few studies. We used stable isotope analysis to gain a better understanding of trophic links of several groups of soil nematodes in two boreal forests on albeluvisol. We investigated four taxonomic groups of nematodes: Mononchida, Dorylaimida, Plectidae and Tylenchidae (mostly from the genus Filenchus), that according to the conventional trophic classification represent predators, omnivores, bacterivores and root-fungal feeders, respectively. To assess the trophic position of nematodes, we used a comparison against a set of reference species including herbivorous, saprophagous and predatory macro-invertebrates, oribatid and mesostigmatid mites, and collembolans. Our results suggest that trophic position of the investigated groups of soil nematodes generally corresponds to the conventional classification. All nematodes were enriched in 13C relative to Picea abies roots and litter, and mycorrhizal fungal mycelium. Root-fungal feeders Tylenchidae had δ15N values similar to those of earthworms, enchytraeids and Entomobrya collembolans, but slightly lower δ13C values. Bacterivorous Plectidae were either equal or enriched in 15N compared with saprophagous macroinvertebrates and most mesofauna species. Omnivorous Dorylaimida and predatory Mononchida were further enriched in 15N and their isotopic signature was similar to that of predatory arthropods. These data confirm a clear separation of nematodes into saprophagous/microbial feeders (Tylenchidae and Plectidae) and predators (Mononchida and Dorylaimida). Furthermore, they suggest that Mononchida and Dorylaimida use different sources of carbon, though exact trophic links remain unclear. As a rule, nematodes were either equal or higher in δ15N values relative to most microbivorous microarthropods, contradicting an emerging view that soil nematodes can be an important prey for a wide range of oribatid mites and collembolans. Patterns of the isotopic signatures suggest that soil nematodes and the bulk of soil animals depend on resources derived from a dominating upper-canopy tree (Picea abies) via the detrital, rather than mycorrhizal pathway.

Humic Substances in Organic Wastes and their Effects on Amended Soils

NASA Astrophysics Data System (ADS)

Senesi, N.; Ciavatta, C.; Plaza, C.

2009-04-01

Soil humic substances (HS) are universally recognized to play a major role in a wide number of agronomic and environmental processes. For example, soil HS are able to bind mineral particles together, thus promoting a good soil structure, constitute an important source of nutrients for plants and microorganisms, contribute largely to the acid-base buffering capacity of soils, and exert a marked control on the biological availability, physico-chemical behavior, and environmental fate of toxic metal ions and xenobiotics. For these reasons, the knowledge of the short- and long-term effects of organic amendments on the status, quality, and reactivity of indigenous soil HS is of paramount importance. The objective of this presentation is to provide an overview of the chemical and physico-chemical data available in the literature for the evaluation of the effects of organic wastes of various origin and nature used as soil amendments on the composition, structure, and chemical reactivity of native soil HS. In general, HS-like components of organic wastes are typically characterized by a relatively larger presence of aliphatic, amide, and polysaccharide structures, simple structural components of wide molecular heterogeneity, smaller contents of oxygen, acidic functional groups, and organic free radicals, and smaller degrees of aromatic ring polycondensation, polymerization, and humification than native soil HS. Further, with respect to native soil HS, HS-like fractions from organic wastes generally exhibit smaller binding capacities and affinities for metal ions and organic xenobiotics. Appropriate treatment processes of raw organic wastes able to produce environmentally safe and agronomically efficient soil amendments, such as composting, yield HS-like fractions characterized by chemical and physico-chemical features that approach those of native soil HS. In general, aliphatic, polysaccharide, and lignin structures and S- and N-containing groups of the HS-like fractions of organic wastes can be partially incorporated into native soil HS determining modifications at various extents of their composition, structure, and chemistry. The changes occurred in amended soil HS are more evident when untreated organic materials are used. However, with increasing time after land application, the effects observed become less and less apparent with a clear trend to approach the molecular properties typical of native soil HS.

Effects of Nutrient Enrichment on Microbial Communities and Carbon Cycling in Wetland Soils

NASA Astrophysics Data System (ADS)

Hartman, W.; Neubauer, S. C.; Richardson, C. J.

2013-12-01

Soil microbial communities are responsible for catalyzing biogeochemical transformations underlying critical wetland functions, including cycling of carbon (C) and nutrients, and emissions of greenhouse gasses (GHG). Alteration of nutrient availability in wetland soils may commonly occur as the result of anthropogenic impacts including runoff from human land uses in uplands, alteration of hydrology, and atmospheric deposition. However, the impacts of altered nutrient availability on microbial communities and carbon cycling in wetland soils are poorly understood. To assess these impacts, soil microbial communities and carbon cycling were determined in replicate experimental nutrient addition plots (control, +N, +P, +NP) across several wetland types, including pocosin peat bogs (NC), freshwater tidal marshes (GA), and tidal salt marshes (SC). Microbial communities were determined by pyrosequencing (Roche 454) extracted soil DNA, targeting both bacteria (16S rDNA) and fungi (LSU) at a depth of ca. 1000 sequences per plot. Wetland carbon cycling was evaluated using static chambers to determine soil GHG fluxes, and plant inclusion chambers were used to determine ecosystem C cycling. Soil bacterial communities responded to nutrient addition treatments in freshwater and tidal marshes, while fungal communities did not respond to treatments in any of our sites. We also compared microbial communities to continuous biogeochemical variables in soil, and found that bacterial community composition was correlated only with the content and availability of soil phosphorus, while fungi responded to phosphorus stoichiometry and soil pH. Surprisingly, we did not find a significant effect of our nutrient addition treatments on most metrics of carbon cycling. However, we did find that several metrics of soil carbon cycling appeared much more related to soil phosphorus than to nitrogen or soil carbon pools. Finally, while overall microbial community composition was weakly correlated with soil carbon cycling, our work did identify a small number of individual taxonomic groups that were more strongly correlated with soil CO2 flux. These results suggest that a small number of microbial groups may potentially serve as keystone taxa (and functional indicators), which simple community fingerprinting approaches may overlook. Our results also demonstrate strong effects of soil phosphorus availability on both microbial communities and soil carbon cycling, even in wetland types traditionally considered to be nitrogen limited.

Evaluation of different agronomic managements on rice mesofauna: a case study in Piedmont (North Italy)

NASA Astrophysics Data System (ADS)

Landi, Silvia; d'Errico, Giada; Gagnarli, Elena; Barzanti, Gian Paolo; Cito, Annarita; Papini, Rossella; Simoni, Sauro; Roversi, Pio Federico

2014-05-01

Rice is the most important cereal crop in the developing world and, in Europe, Italy is leader in rice production. The intensive cultivation of rice leads to continuous inputs chemicals as fertilizers, weeding and pesticides. The intensification of sustainable rice production by minimizing the impact on the environment of cultivation is a main issue . In this context this study, supported by the Italian National Project POLORISO (MIPAAF), aims to afford preliminary indications about the evaluation of ecological impact by different managements on soil mesofauna biodiversity. Biomonitoring of soil mesofauna, in particular nematodes and microarthropods, allows to determine the effects of crop management on the communities; the lack and/or reduction of these organisms can allow inference on the soil quality. This preliminary study aims at evaluate the different influence of conventional, integrated and biological managements on mesofauna communities. The samplings were conducted in Summer and Autumn 2013 near Vercelli (North Italy) in three study sites with similar pedologic characteristics but different in control strategies (conventional, organic farming, Integrated Pest Management (IPM)). The extraction of nematodes and microarthropods was performed by Bermann method and the Berlese-Tullgren selector, respectively. All specimens were counted and determined up to the order level. The biological soil quality was evaluated by Maturity Index (MI) for nematodes, BSQar and the soil Biological Classes (sBC)(range I-VII) for microarthropods. Regarding nematodes, Rhabditidae, Dorylamidae, Mononchidae, Tylenchidae and Heteroderidae were the most represented families. The Principal Component Analysis (PCA) evidenced that the trophic group of plant parasites was favored in organic farming, while groups of omnivores and predators were abundant in the other managements. The lowest nematodes' abundance was found in submerged rice soil with dominance of omnivores and plant parasites groups. Dry land was more suitable to development of bacterial feeders and predators. On the whole, MI values ranged between 2 and 3, registered in organic farming and conventional management, respectively. The Acari represented the main group of microarthropods (about 43%), then Diptera (33%), Collembola (19%) and the others. The only euedaphic groups are Acari and Collembola. The BSQar value was 48 (sBC II) in IPM rice field, 71 in organic farming (sBC II/III), 95 in conventional management (sBC III). On all situation tested, the analysis of soil quality, by the study of mesofauna, reflects low differentiation in the arthropod communities' structure. In general, the results relative to the soil mesofauna biodiversity indicated a quite high level of disturbance and a low level of biodiversity. Future studies on this subject could help preserve, or even enhance, the biodiversity and soil quality.

Using operational and defined fractions to assess soil organic matter stabilization and structure

NASA Astrophysics Data System (ADS)

Horwath, W. R.

2015-12-01

Studies on soil organic matter (SOM) began with alkaline solvents revealing a dark colored substance that could be isolated under low pH. Further studies revealed fulvic and humic acids and humin fractions leading to theories on functional groups and metal-clay bridging mechanisms. The fate of isotopes in these fractions revealed soil carbon pools with varying turnover rates with half the soil carbon (C) in humin and acid hydrolyzed fractions over 1000 years old. These results are the basis of the three pool conceptual framework used in many biogeochemical models. Theories on the role of functional groups and compound classes further elaborated concepts on physical (aggregates) and chemical mechanisms of C stabilization. With the advance of analytical instrumentation, the operational fractions were further defined to the compound and molecular levels. These studies confirmed the majority of soil C is microbially derived. Our observation that all microbial groups contributed nonselectively to soil C maintenance independent of mineralogy suggests that compound characteristics within integrated structures are more important than the source of individual compounds for stabilizing soil C. In dissolved organic C floccing studies using Near Edge X-ray Fine Structure analysis, we found that aromatic compounds interacted first with Fe, however, the majority of direct bonds to Fe were polysaccharides, reinforcing that an integrative chemical structure rather than direct bonds imparted stability in organo-metal interactions. Using a novel differential scanning calorimeter coupled to an isotope ratio mass spectrometer setup, we confirmed that the presence of clays (independent of clay type) increased the microbial utilization of calcium stabilized high versus low temperature compounds, asserting that higher temperature compounds (i.e., phenolics) are likely less tightly bound by clay minerals. The integration of operational and defined fractions of SOM remains a legitimate approach to examine SOM structure and stabilization across scales of soil development and management.

[Litter decomposition and soil faunal diversity of two understory plant debris in the alpine timberline ecotone of western Sichuan in a snow cover season].

PubMed

He, Run-lian; Chen, Ya-mei; Deng, Chang-chun; Yan, Wan-qin; Zhang, Jian; Liu, Yang

2015-03-01

In order to understand the relationship between litter decomposition and soil fauna diversity during snow cover season, litterbags with plant debris of Actinothuidium hookeri, Cystopteris montana, two representative understory plants in the alpine timberline ecotone, and their mixed litter were incubated in the dark coniferous forest, timberline and alpine meadow, respectively. After a snow cover season, the mass loss and soil fauna in litterbags were investigated. After decomposition with a snow cover season, alpine meadow showed the highest mass loss of plant debris in comparison with coniferous forest and timberline, and the mass loss of A. hookeri was more significant. The mixture of two plants debris accelerated the mass loss, especially in the timberline. A total of 968 soil invertebrates, which belonged to 5 classes, 10 orders and 35 families, were captured in litterbags. Acarina and Collembola were the dominant groups in plant debris. The numbers of individuals and groups of soil faunal communities in litter of timberline were higher than those of alpine meadow and dark coniferous forest. Canonical correspondence analysis (CCA) indicated that the groups of soil animals were related closely with the average temperature, and endemic species such as Isoptera and Geophilomorpha were observed only in coniferous forest, while Hemiptera and Psocoptera only in.the alpine meadow. The diversity of soil faunal community was more affected by plant debris varieties in the timberline than in the coniferous forest and alpine meadow. Multiple regression analysis indicated that the average temperature and snow depth explained 30.8% of the variation of litter mass loss rate, soil animals explained 8.3%, and altogether explained 34.1%. Snow was one of the most critical factors impacting the decomposition of A. hookeri and C. montana debris in the alpine timberline ecotone.

Characterization of bacterial functional groups and microbial activity in microcosms with glyphosate application

NASA Astrophysics Data System (ADS)

Moyano, Sofia; Bonetto, Mariana; Baigorria, Tomas; Pegoraro, Vanesa; Ortiz, Jimena; Faggioli, Valeria; Conde, Belen; Cazorla, Cristian; Boccolini, Monica

2017-04-01

Glyphosate is a worldwide used herbicide as c. 90% of transgenic crops are tolerant to it. Microbial degradation of glyphosate molecule in soil is considered the most important process that determines its persistence in the environment. However, the impact of this herbicide on target groups of soil biota remains poorly understood. Our objective was to characterize the abundance of bacterial groups and global microbial activity, under controlled conditions with application of increasing doses of glyphosate. A bioassay was carried out in microcosms using an agricultural soil (Typic Argiudoll) with registered history of glyphosate application from National Institute of Agricultural Technology (INTA, EEA Marcos Juarez, Argentina). Glyphosate of commercial formulation (74.7%) was used and the following treatments were evaluated: Soil without glyphosate (control), and Soil with doses equivalent to 1.12 and 11.2 kg ai ha-1. Microbiological parameters were estimated at 3, 7, 14 and 21 days after herbicide application by counting heterotrophic, cellulolytic, nitrogen fixing (N), and nitrifying bacteria; and fluorescein diacetate hydrolysis (FDA), microbial respiration (MR) and microbial biomass (C-BM). The N cycle related bacteria showed greater sensitivity to glyphosate with significant increases in abundance. On the other hand the C cycle parameters were strongly conditioned by the time elapsed since the application of the herbicide, as did the MR. The FDA declined with the highest dose, while the C-BM was not affected. Therefore, we conclude that in the studied experimental conditions glyphosate stimulated bacterial growth (i.e. target abundances) representing a source of N, C and nutrients. On the other hand, enzymatic activity (FDA) decreased when glyphosate was applied in the highest dose, whereas, it had no effect on the MR nor C-BM, which could be attributable to the organic matter content of the soil. However, future research in field conditions is necessary, for evaluated glyphosate behaviour in soil bioactivity and interaction with different soil factors.

Nitrogen Addition Regulates Soil Nematode Community Composition through Ammonium Suppression

PubMed Central

Wei, Cunzheng; Zheng, Huifen; Li, Qi; Lü, Xiaotao; Yu, Qiang; Zhang, Haiyang; Chen, Quansheng; He, Nianpeng; Kardol, Paul; Liang, Wenju; Han, Xingguo

2012-01-01

Nitrogen (N) enrichment resulting from anthropogenic activities has greatly changed the composition and functioning of soil communities. Nematodes are one of the most abundant and diverse groups of soil organisms, and they occupy key trophic positions in the soil detritus food web. Nematodes have therefore been proposed as useful indicators for shifts in soil ecosystem functioning under N enrichment. Here, we monitored temporal dynamics of the soil nematode community using a multi-level N addition experiment in an Inner Mongolia grassland. Measurements were made three years after the start of the experiment. We used structural equation modeling (SEM) to explore the mechanisms regulating nematode responses to N enrichment. Across the N enrichment gradient, significant reductions in total nematode abundance, diversity (H' and taxonomic richness), maturity index (MI), and the abundance of root herbivores, fungivores and omnivores-predators were found in August. Root herbivores recovered in September, contributing to the temporal variation of total nematode abundance across the N gradient. Bacterivores showed a hump-shaped relationship with N addition rate, both in August and September. Ammonium concentration was negatively correlated with the abundance of total and herbivorous nematodes in August, but not in September. Ammonium suppression explained 61% of the variation in nematode richness and 43% of the variation in nematode trophic group composition. Ammonium toxicity may occur when herbivorous nematodes feed on root fluid, providing a possible explanation for the negative relationship between herbivorous nematodes and ammonium concentration in August. We found a significantly positive relationship between fungivores and fungal phospholipid fatty acids (PLFA), suggesting bottom-up control of fungivores. No such relationship was found between bacterivorous nematodes and bacterial PLFA. Our findings contribute to the understanding of effects of N enrichment in semiarid grassland on soil nematode trophic groups, and the cascading effects in the detrital soil food web. PMID:22952671

Development of soil quality along a chronosequence under natural succession in the Dragonja catchment, SW Slovenia

NASA Astrophysics Data System (ADS)

van Hall, Rutger; Cammeraat, Erik

2015-04-01

Agricultural fields have been increasingly abandoned in several regions in Southern Europe. In many cases this leads to natural vegetation succession which may have a direct impact on soil quality,biodiversity and hydrological connectivity. This research aims at getting insight on the effects of natural vegetation succession on the development of soil quality in the Sub-Mediterranean Dragonja catchment in SW Slovenia. This site was chosen due to its uniform geology, geomorphology and soil types. Four different stages of vegetation succession (i.e. field, abandoned field, young forest, semi-mature forest) were selected and sampled on both north-, and south-facing slopes, resulting in 8 treatments for which 6 representative sites were sampled. Samples were analysed on OC and TN content, EC, pH, bulk density, aggregate stability and grain size distribution. To get insight on the changes in biodiversity vegetation records were made distinguishing five different plant functional groups (i.e. juveniles, grasses, herbs, shrubs and trees). Age group (i.e. stage of vegetation succession) significantly influenced the OC and TN content, aggregate stability, bulk density and pH. Directly after abandonment, between age group 0 and 1, OC and TN content, aggregate stability and pH increased significantly and bulk density decreased significantly. OC content was most affected by age group and furthermore significantly correlated to TN content, aggregate stability, bulk density and pH. Regarding biodiversity, there was a significant increase in cover by trees between age group 1 and 2 and a significant decrease between age group 2 and 3. Cover by herbs decreased significantly between age group 1 and 2. The number of different trees and shrubs increased significantly between age group 0 and 1, and the number of different juveniles increased significantly between age group 2 and 3. Another factor significantly influencing the soil's quality is aspect. Although not found for each age group south-facing slopes generally had higher OC and TN content, and higher pH than north-facing slopes. On average OC content was 28% higher and TN content 25% higher on south facing slopes. Aspect did not have a significant influence on the biodiversity although on average vegetation cover is slightly (7%) higher and 16% mores species were found on north facing slopes.

Role and Variation of the Amount and Composition of Glomalin in Soil Properties in Farmland and Adjacent Plantations with Reference to a Primary Forest in North-Eastern China

PubMed Central

Wang, Qiong; Wang, Wenjie; He, Xingyuan; Zhang, Wentian; Song, Kaishan; Han, Shijie

2015-01-01

The glycoprotein known as glomalin-related soil protein (GRSP) is abundantly produced on the hyphae and spores of arbuscular mycorrhizal fungi (AMF) in soil and roots. Few studies have focused on its amount, composition and associations with soil properties and possible land-use influences, although the data hints at soil rehabilitation. By choosing a primary forest soil as a non-degraded reference, it is possible to explore whether afforestation can improve degraded farmland soil by altering GRSP. In this paper, close correlations were found between various soil properties (soil organic carbon, nitrogen, pH, electrical conductivity (EC), and bulk density) and the GRSP amount, between various soil properties and GRSP composition (main functional groups, fluorescent substances, and elements). Afforestation on farmland decreased the EC and bulk density (p < 0.05). The primary forest had a 2.35–2.56-fold higher GRSP amount than those in the plantation forest and farmland, and GRSP composition (tryptophan-like and fulvic acid-like fluorescence; functional groups of C–H, C–O, and O–H; elements of Al, O, Si, C, Ca, and N) in primary forest differed from those in plantation forest and farmland (p < 0.05). However, no evident differences in GRSP amount and composition were observed between the farmland and the plantation forest. Our finding highlights that 30 years poplar afforestation on degraded farmland is not enough to change GRSP-related properties. A longer period of afforestation with close-to-nature managements may favor the AMF-related underground recovery processes. PMID:26430896

Tracking the flow of bacterially derived 13C and 15N through soil faunal feeding channels.

PubMed

Crotty, F V; Blackshaw, R P; Murray, P J

2011-06-15

The soil food web has been referred to as a 'black box', a 'poor man's tropical rainforest' and an 'enigma', due to its opacity, diversity and the limited insight into feeding specificity. Here we investigate the flow of C and N through the soil food web as a way to gain understanding of the feeding interactions occurring. A bacterium, Pseudomonas lurida, was introduced to soil cores from two different habitats, a grassland and a woodland with the same soil type, enriched to 99 atom% in (13)C and (15)N, to trace the flow of bacterial C and N through the soil food web. Throughout the experiment the soil remained enriched in (13)C and (15)N. Almost all the invertebrates tested gained C and N enrichment indicative of the labelled bacteria, implying that bacterial feeding is a common mechanism within the soil. Only three groups were significantly enriched in both (13)C and (15)N in both habitats. These were Collembola (Entomobryomorpha), Acari (Oribatida), and Nematoda, indicating that these organisms are consuming the most bacteria within both systems. When the invertebrates were grouped into hypothesised trophic levels, those considered secondary decomposers were gaining the most enrichment across all invertebrates tested. This enrichment was also high in the micro-predators within the soil, implying that their main food source was the secondary decomposers, particularly the Collembola. Using an enriched bacterium to track the trophic transfer between organisms within the soil food web is a novel way of empirically showing that interactions are occurring, which normally cannot be seen. Copyright © 2011 John Wiley & Sons, Ltd.

Conspecific Plant-Soil Feedbacks of Temperate Tree Species in the Southern Appalachians, USA

PubMed Central

Reinhart, Kurt O.; Johnson, Daniel; Clay, Keith

2012-01-01

Many tree species have seedling recruitment patterns suggesting that they are affected by non-competitive distance-dependent sources of mortality. We conducted an experiment, with landscape-level replication, to identify cases of negative distance-dependent effects and whether variation in these effects corresponded with tree recruitment patterns in the southern Appalachian Mountains region. Specifically, soil was collected from 14 sites and used as inocula in a 62 day growth chamber experiment determining whether tree seedling growth was less when interacting with soil from conspecific (like) than heterospecific (other) tree species. Tests were performed on six tree species. Three of the tree species had been previously described as having greater recruitment around conspecifics (i.e. facilitator species group) compared to the other half (i.e. inhibitor species group). We were then able to determine whether variation in negative distance-dependent effects corresponded with recruitment patterns in the field. Across the six species, none were negatively affected by soil inocula from conspecific relative to heterospecific sources. Most species (four of six) were unaffected by soil source. Two species (Prunus serotina and Tsuga canadensis) had enhanced growth in pots inoculated with soil from conspecific trees vs. heterospecifics. Species varied in their susceptibility to soil pathogens, but trends across all species revealed that species classified as inhibitors were not more negatively affected by conspecific than heterospecific soil inocula or more susceptible to pathogenic effects than facilitators. Although plant-soil biota interactions may be important for individual species and sites, it may be difficult to scale these interactions over space or levels of ecological organization. Generalizing the importance of plant-soil feedbacks or other factors across regional scales may be especially problematic for hyperdiverse temperate forests where interactions may be spatially variable. PMID:22808231

Conspecific plant-soil feedbacks of temperate tree species in the southern Appalachians, USA.

PubMed

Reinhart, Kurt O; Johnson, Daniel; Clay, Keith

2012-01-01

Many tree species have seedling recruitment patterns suggesting that they are affected by non-competitive distance-dependent sources of mortality. We conducted an experiment, with landscape-level replication, to identify cases of negative distance-dependent effects and whether variation in these effects corresponded with tree recruitment patterns in the southern Appalachian Mountains region. Specifically, soil was collected from 14 sites and used as inocula in a 62 day growth chamber experiment determining whether tree seedling growth was less when interacting with soil from conspecific (like) than heterospecific (other) tree species. Tests were performed on six tree species. Three of the tree species had been previously described as having greater recruitment around conspecifics (i.e. facilitator species group) compared to the other half (i.e. inhibitor species group). We were then able to determine whether variation in negative distance-dependent effects corresponded with recruitment patterns in the field. Across the six species, none were negatively affected by soil inocula from conspecific relative to heterospecific sources. Most species (four of six) were unaffected by soil source. Two species (Prunus serotina and Tsuga canadensis) had enhanced growth in pots inoculated with soil from conspecific trees vs. heterospecifics. Species varied in their susceptibility to soil pathogens, but trends across all species revealed that species classified as inhibitors were not more negatively affected by conspecific than heterospecific soil inocula or more susceptible to pathogenic effects than facilitators. Although plant-soil biota interactions may be important for individual species and sites, it may be difficult to scale these interactions over space or levels of ecological organization. Generalizing the importance of plant-soil feedbacks or other factors across regional scales may be especially problematic for hyperdiverse temperate forests where interactions may be spatially variable.

Soil moisture mediates alpine life form and community productivity responses to warming.

PubMed

Winkler, Daniel E; Chapin, Kenneth J; Kueppers, Lara M

2016-06-01

Climate change is expected to alter primary production and community composition in alpine ecosystems, but the direction and magnitude of change is debated. Warmer, wetter growing seasons may increase productivity; however, in the absence of additional precipitation, increased temperatures may decrease soil moisture, thereby diminishing any positive effect of warming. Since plant species show individual responses to environmental change, responses may depend on community composition and vary across life form or functional groups. We warmed an alpine plant community at Niwot Ridge, Colorado continuously for four years to test whether warming increases or decreases productivity of life form groups and the whole community. We provided supplemental water to a subset of plots to alleviate the drying effect of warming. We measured annual above-ground productivity and soil temperature and moisture, from which we calculated soil degree days and adequate soil moisture days. Using an information-theoretic approach, we observed that positive productivity responses to warming at the community level occur only when warming is combined with supplemental watering; otherwise we observed decreased productivity. Watering also increased community productivity in the absence of warming. Forbs accounted for the majority of the productivity at the site and drove the contingent community response to warming, while cushions drove the generally positive response to watering and graminoids muted the community response. Warming advanced snowmelt and increased soil degree days, while watering increased adequate soil moisture days. Heated and watered plots had more adequate soil moisture days than heated plots. Overall, measured changes in soil temperature and moisture in response to treatments were consistent with expected productivity responses. We found that available soil moisture largely determines the responses of this forb-dominated alpine community to simulated climate warming. © 2016 by the Ecological Society of America.

Mapping of Soil-Ecological Conditions of a Medium-Size Industrial City (Birobidzhan City, Jewish Autonomous Oblast, FarEast of Russia as an Example)

NASA Astrophysics Data System (ADS)

Kalmanova, V. B.; Matiushkina, L. A.

2018-01-01

The authors analyze soil relations with other elements of the city ecosystem (the position in the landscape, soil-forming rocks and lithology, vegetation and its state) to develop the legend and map of soils in the City of Birobidzhan (scale 1:25 000). The focus of study is the morphological structure of urban soils with different degree of disturbance of these relations under the impact of technical effects, economic and recreational activities of the city population. The soil cover structure is composed of four large ecological groups of soils: natural untransformed, natural with a disturbed surface, anthropogenic soils and technogenic surface formations. Using cartometry of the mapped soil contours the authors created the scheme of soil-ecological city zoning, which in a general way depicts the state of soil ecological functions in the city as well as identified zones of soils with preserved, partially and fully distured ecological functions and zones of local geochemical anomalies at the initial formation stage (environmental risk zones).

Occurrence and species distribution of pathogenic Mucorales in unselected soil samples from France.

PubMed

Mousavi, B; Costa, J M; Arné, P; Guillot, J; Chermette, R; Botterel, F; Dannaoui, E

2018-04-01

Mucormycosis is a life-threatening invasive fungal disease that affects a variety of patient groups. Although Mucorales are mostly opportunistic pathogens originating from soil or decaying vegetation, there are currently few data on prevalence of this group of fungi in the environment. The aim of the present study was to assess the prevalence and diversity of species of Mucorales from soil samples collected in France. Two grams of soil were homogenized in sterile saline and plated on Sabouraud dextrose agar and RPMI agar supplemented with itraconazole or voriconazole. Both media contained chloramphenicol and gentamicin. The plates were incubated at 35 ± 2 °C and checked daily for fungal growth for a maximum of 7 d. Mucorales were subcultured for purity. Each isolate was identified phenotypically and molecular identification was performed by ITS sequencing. A total of 170 soil samples were analyzed. Forty-one isolates of Mucorales were retrieved from 38 culture-positive samples. Among the recovered isolates, 27 Rhizopus arrhizus, 11 Mucor circinelloides, one Lichtheimia corymbifera, one Rhizopus microsporus and one Cunninghamella bertholletiae were found. Positive soil samples came from cultivated fields but also from other types of soil such as flower beds. Mucorales were retrieved from samples obtained in different geographical regions of France. Voriconazole-containing medium improved the recovery of Mucorales compared with other media. The present study showed that pathogenic Mucorales are frequently recovered from soil samples in France. Species diversity should be further analyzed on a larger number of soil samples from different geographic areas in France and in other countries.

Representing life in the Earth system with soil microbial functional traits in the MIMICS model

NASA Astrophysics Data System (ADS)

Wieder, W. R.; Grandy, A. S.; Kallenbach, C. M.; Taylor, P. G.; Bonan, G. B.

2015-02-01

Projecting biogeochemical responses to global environmental change requires multi-scaled perspectives that consider organismal diversity, ecosystem processes and global fluxes. However, microbes, the drivers of soil organic matter decomposition and stabilization, remain notably absent from models used to project carbon cycle-climate feedbacks. We used a microbial trait-based soil carbon (C) model, with two physiologically distinct microbial communities to improve current estimates of soil C storage and their likely response to perturbations. Drawing from the application of functional traits used to model other ecosystems, we incorporate copiotrophic and oligotrophic microbial functional groups in the MIcrobial-MIneral Carbon Stabilization (MIMICS) model, which incorporates oligotrophic and copiotrophic functional groups, akin to "gleaner" vs. "opportunist" plankton in the ocean, or r vs. K strategists in plant and animals communities. Here we compare MIMICS to a conventional soil C model, DAYCENT, in cross-site comparisons of nitrogen (N) enrichment effects on soil C dynamics. MIMICS more accurately simulates C responses to N enrichment; moreover, it raises important hypotheses involving the roles of substrate availability, community-level enzyme induction, and microbial physiological responses in explaining various soil biogeochemical responses to N enrichment. In global-scale analyses, we show that current projections from Earth system models likely overestimate the strength of the land C sink in response to increasing C inputs with elevated carbon dioxide (CO2). Our findings illustrate that tradeoffs between theory and utility can be overcome to develop soil biogeochemistry models that evaluate and advance our theoretical understanding of microbial dynamics and soil biogeochemical responses to environmental change.

Spatial and temporal variability of soil temperature, moisture and surface soil properties

NASA Technical Reports Server (NTRS)

Hajek, B. F.; Dane, J. H.

1993-01-01

The overall objectives of this research were to: (l) Relate in-situ measured soil-water content and temperature profiles to remotely sensed surface soil-water and temperature conditions; to model simultaneous heat and water movement for spatially and temporally changing soil conditions; (2) Determine the spatial and temporal variability of surface soil properties affecting emissivity, reflectance, and material and energy flux across the soil surface. This will include physical, chemical, and mineralogical characteristics of primary soil components and aggregate systems; and (3) Develop surface soil classes of naturally occurring and distributed soil property assemblages and group classes to be tested with respect to water content, emissivity and reflectivity. This document is a report of studies conducted during the period funded by NASA grants. The project was designed to be conducted over a five year period. Since funding was discontinued after three years, some of the research started was not completed. Additional publications are planned whenever funding can be obtained to finalize data analysis for both the arid and humid locations.

Contribution of microbial carbon to soil fractions: significance of diverse microbial group biochemistry

NASA Astrophysics Data System (ADS)

Throckmorton, H.; Bird, J. A.; Dane, L.; Firestone, M. K.; Horwath, W. R.

2011-12-01

The importance of diverse microbial groups to soil C maintenance is still a matter of debate. This study follows the turnover of 13C labeled nonliving residues from diverse microbial groups into soil physical fractions in situ in a temperate forest in California (CA) and a tropical forest in Puerto Rico (PR), during 5 sampling points per site- over a 3 and 2 year period, respectively. Microbial groups include fungi, actinomycetes, Gm(+) bacteria, and Gm(-) bacteria, isolated from CA and PR soils to obtain temperate and tropical isolates composited of 3-4 species per group. The selected density fractionation approach isolated: a "light fraction" (LF), non-mineral aggregate "occluded fraction" (OF), and a "mineral bound fraction" (MF). Pyrolysis gas chromatography mass spectrometry (Py-GC-MS) was employed to characterize microbial group isolates, whole soils, and fractions. Microbial isolates contained unique biochemical fingerprints: temperate and tropical fungi and tropical Gm(-) were characterized by a low abundance of phenol, benzene, and N-compounds compared with other microbial group isolates. Py-GC-MS revealed compositional differences among soil fractions at both sites, likely attributed to differences in the decomposition stage and C source material (ie. plant vs. microbial). For both sites, benzene and N-compounds were greatest in the MF; lignin and phenol compounds were greatest in the LF; and lipids were greatest in the OF. The trend for polysaccharides differed between sites, with the greatest concentration in the CA OF; and for PR with the lowest concentration in the OF, and similar concentrations in the LF and MF. SOM chemistry was most similar between sites in the LF, compared with the OF and MF, suggesting that differences in SOM chemistry between sites may be more attributed to differential decomposition processes than unique litter quality inputs. A substantial portion of microbial C moved from the LF into the OF, and the MF by the first sampling point for both sites. Microbial C inputs were more stable in the OF and MF than the LF throughout the course of the study at both sites. There were no differences in 13C recovery among microbial isolates in any fractions in PR, despite minor differences in overall turnover rates. In CA, there were some differences among microbial isolates in 13C recovery in the LF and OF, which related to 13C recoveries in whole soils. In the CA MF, microbial 13C recoveries did not significantly differ, and in generally low variability among treatments was observed. Results support increased protection of microbial C via association with the MF; however, differential sorption of various microbial group isolates over others was not observed. Overall results suggest that inherent properties of microbial residues may be more important to determining its stability in CA soils when it is 1) unassociated with the mineral matrix (LF); or 2) physically occluded within aggregates; compared with that intimately associated with mineral surfaces (MF). Compound-specific recovery of microbial isolates with Py-GC-MS-IRMS will be discussed.

The interactions of composting and biochar and their implications for soil amendment and pollution remediation: a review.

PubMed

Wu, Haipeng; Lai, Cui; Zeng, Guangming; Liang, Jie; Chen, Jin; Xu, Jijun; Dai, Juan; Li, Xiaodong; Liu, Junfeng; Chen, Ming; Lu, Lunhui; Hu, Liang; Wan, Jia

2017-09-01

Compost and biochar, used for the remediation of soil, are seen as attractive waste management options for the increasing volume of organic wastes being produced. This paper reviews the interaction of biochar and composting and its implication for soil amendment and pollution remediation. The interaction of biochar and composting affect each other's properties. Biochar could change the physico-chemical properties, microorganisms, degradation, humification and gas emission of composting, such as the increase of nutrients, cation exchange capacity (CEC), organic matter and microbial activities. The composting could also change the physico-chemical properties and facial functional groups of biochar, such as the improvement of nutrients, CEC, functional groups and organic matter. These changes would potentially improve the efficiency of the biochar and composting for soil amendment and pollution remediation. Based on the above review, this paper also discusses the future research required in this field.

Soil mites of the families Ascidae, Blattisociidae and Melicharidae (Acari: Mesostigmata) from mountainous areas of Colombia.

PubMed

Rueda-Ramírez, Diana; Varela, Amanda; Moraes, Gilberto J De

2016-06-24

Soil mites of the Ascidae sensu Lindquist & Evans (1965) are poorly known in Colombia. This group, presently represented by the families Ascidae sensu stricto, Blattisociidae and Melicharidae, contains species known to prey on small arthropods and nematodes, thus having the potential to be used for the control of soil pests. The aim of this study was to identify species of this group from a fragment of Andean forest and a nearby grassland at the municipality of La Calera, Cundinamarca Department, Colombia, at about 2800 m of elevation. Nine species were found, including five new species, namely Gamasellodes andinus sp. nov., Gamasellodes intermedius sp. nov., Protogamasellus caleraensis sp. nov., Cheiroseius mesae sp. nov. and Proctolaelaps colombianus sp. nov. Morphological characterisation of all the species and relevant soil characteristics of the sites where the mites were collected are presented.

Distinct Soil Bacterial Communities Revealed under a Diversely Managed Agroecosystem

PubMed Central

Shange, Raymon S.; Ankumah, Ramble O.; Ibekwe, Abasiofiok M.; Zabawa, Robert; Dowd, Scot E.

2012-01-01

Land-use change and management practices are normally enacted to manipulate environments to improve conditions that relate to production, remediation, and accommodation. However, their effect on the soil microbial community and their subsequent influence on soil function is still difficult to quantify. Recent applications of molecular techniques to soil biology, especially the use of 16S rRNA, are helping to bridge this gap. In this study, the influence of three land-use systems within a demonstration farm were evaluated with a view to further understand how these practices may impact observed soil bacterial communities. Replicate soil samples collected from the three land-use systems (grazed pine forest, cultivated crop, and grazed pasture) on a single soil type. High throughput 16S rRNA gene pyrosequencing was used to generate sequence datasets. The different land use systems showed distinction in the structure of their bacterial communities with respect to the differences detected in cluster analysis as well as diversity indices. Specific taxa, particularly Actinobacteria, Acidobacteria, and classes of Proteobacteria, showed significant shifts across the land-use strata. Families belonging to these taxa broke with notions of copio- and oligotrphy at the class level, as many of the less abundant groups of families of Actinobacteria showed a propensity for soil environments with reduced carbon/nutrient availability. Orders Actinomycetales and Solirubrobacterales showed their highest abundance in the heavily disturbed cultivated system despite the lowest soil organic carbon (SOC) values across the site. Selected soil properties ([SOC], total nitrogen [TN], soil texture, phosphodiesterase [PD], alkaline phosphatase [APA], acid phosphatase [ACP] activity, and pH) also differed significantly across land-use regimes, with SOM, PD, and pH showing variation consistent with shifts in community structure and composition. These results suggest that use of pyrosequencing along with traditional analysis of soil physiochemical properties may provide insight into the ecology of descending taxonomic groups in bacterial communities. PMID:22844402

Distinct soil bacterial communities revealed under a diversely managed agroecosystem.

PubMed

Shange, Raymon S; Ankumah, Ramble O; Ibekwe, Abasiofiok M; Zabawa, Robert; Dowd, Scot E

2012-01-01

Land-use change and management practices are normally enacted to manipulate environments to improve conditions that relate to production, remediation, and accommodation. However, their effect on the soil microbial community and their subsequent influence on soil function is still difficult to quantify. Recent applications of molecular techniques to soil biology, especially the use of 16S rRNA, are helping to bridge this gap. In this study, the influence of three land-use systems within a demonstration farm were evaluated with a view to further understand how these practices may impact observed soil bacterial communities. Replicate soil samples collected from the three land-use systems (grazed pine forest, cultivated crop, and grazed pasture) on a single soil type. High throughput 16S rRNA gene pyrosequencing was used to generate sequence datasets. The different land use systems showed distinction in the structure of their bacterial communities with respect to the differences detected in cluster analysis as well as diversity indices. Specific taxa, particularly Actinobacteria, Acidobacteria, and classes of Proteobacteria, showed significant shifts across the land-use strata. Families belonging to these taxa broke with notions of copio- and oligotrphy at the class level, as many of the less abundant groups of families of Actinobacteria showed a propensity for soil environments with reduced carbon/nutrient availability. Orders Actinomycetales and Solirubrobacterales showed their highest abundance in the heavily disturbed cultivated system despite the lowest soil organic carbon (SOC) values across the site. Selected soil properties ([SOC], total nitrogen [TN], soil texture, phosphodiesterase [PD], alkaline phosphatase [APA], acid phosphatase [ACP] activity, and pH) also differed significantly across land-use regimes, with SOM, PD, and pH showing variation consistent with shifts in community structure and composition. These results suggest that use of pyrosequencing along with traditional analysis of soil physiochemical properties may provide insight into the ecology of descending taxonomic groups in bacterial communities.

Advanced multivariate analysis to assess remediation of hydrocarbons in soils.

PubMed

Lin, Deborah S; Taylor, Peter; Tibbett, Mark

2014-10-01

Accurate monitoring of degradation levels in soils is essential in order to understand and achieve complete degradation of petroleum hydrocarbons in contaminated soils. We aimed to develop the use of multivariate methods for the monitoring of biodegradation of diesel in soils and to determine if diesel contaminated soils could be remediated to a chemical composition similar to that of an uncontaminated soil. An incubation experiment was set up with three contrasting soil types. Each soil was exposed to diesel at varying stages of degradation and then analysed for key hydrocarbons throughout 161 days of incubation. Hydrocarbon distributions were analysed by Principal Coordinate Analysis and similar samples grouped by cluster analysis. Variation and differences between samples were determined using permutational multivariate analysis of variance. It was found that all soils followed trajectories approaching the chemical composition of the unpolluted soil. Some contaminated soils were no longer significantly different to that of uncontaminated soil after 161 days of incubation. The use of cluster analysis allows the assignment of a percentage chemical similarity of a diesel contaminated soil to an uncontaminated soil sample. This will aid in the monitoring of hydrocarbon contaminated sites and the establishment of potential endpoints for successful remediation.

[Soil mesofauna in differents systems of land use soil in Upper River Solimões, AM, Brazil].

PubMed

Morais, José W De; Oliveira, Viviane Dos S; Dambros, Cristian De S; Tapia-Coral, Sandra C; Acioli, Agno N S

2010-01-01

The mesofauna has an important function in the soil and it is represented mainly by Acari Oribatida and Collembola. We report the first data on the density and diversity of the soil mesofauna in Benjamin Constant, Amazonas State, Brazil. The following systems were evaluated: primary forest, secondary forest, agroforestry system, cultivated areas and pastures. A total of 101 samples were collected 100 m apart from each other and specimens were collected by using Berlese-Tullgren method. The highest density was registered in secondary forest (29,776 specimens.m-2). Acari Oribatida was the dominant group (7.072 specimens.m-2) in the pasture, suggesting that mites show higher capacity of adaptation to disturbed environments and/or due to the presence of gregarious species. The density of Collembola (5,632 specimens.m-2) was higher in secondary forest. Formicidae was the dominant group (27,824 specimens.m-2) and its highest density occurred in the secondary forest (12,336 specimens.m-2). Seven species and ten morphospecies of Isoptera and three species of Symphyla were identified. The highest density and diversity were found in secondary forest. One supposes that the low density of mesofauna found in all of the studied systems is being influenced by soil structure and composition as well as litter volume. For SUT, the composition of taxonomic groups in the cultivated areas is similar to the one found in primary forest, while the groups found in the agroforestry system are similar to those in the pasture, which may help to decide on land use strategies.

Partial Characterization of Biosurfactant from Lactobacillus pentosus and Comparison with Sodium Dodecyl Sulphate for the Bioremediation of Hydrocarbon Contaminated Soil

PubMed Central

Moldes, A. B.; Paradelo, R.; Vecino, X.; Cruz, J. M.; Gudiña, E.; Rodrigues, L.; Teixeira, J. A.; Domínguez, J. M.; Barral, M. T.

2013-01-01

The capability of a cell bound biosurfactant produced by Lactobacillus pentosus, to accelerate the bioremediation of a hydrocarbon-contaminated soil, was compared with a synthetic anionic surfactant (sodium dodecyl sulphate SDS-). The biosurfactant produced by the bacteria was analyzed by Fourier transform infrared spectroscopy (FTIR) that clearly indicates the presence of OH and NH groups, C=O stretching of carbonyl groups and NH nebding (peptide linkage), as well as CH2–CH3 and C–O stretching, with similar FTIR spectra than other biosurfactants obtained from lactic acid bacteria. After the characterization of biosurfactant by FTIR, soil contaminated with 7,000 mg Kg−1 of octane was treated with biosurfactant from L. pentosus or SDS. Treatment of soil for 15 days with the biosurfactant produced by L. pentosus led to a 65.1% reduction in the hydrocarbon concentration, whereas SDS reduced the octane concentration to 37.2% compared with a 2.2% reduction in the soil contaminated with octane in absence of biosurfactant used as control. Besides, after 30 days of incubation soil with SDS or biosurfactant gave percentages of bioremediation around 90% in both cases. Thus, it can be concluded that biosurfactant produced by L. pentosus accelerates the bioremediation of octane-contaminated soil by improving the solubilisation of octane in the water phase of soil, achieving even better results than those reached with SDS after 15-day treatment. PMID:23691515

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nisbet, A.F.; Woodman, R.F.M.

A database of soil-to-plant transfer factors for radiocesium and radiostrontium has been compiled for arable crops from published and unpublished sources. The database is more extensive than previous compilations of data published by the International Union of Radioecologists, containing new information for Scandinavia and Greece in particular. It also contains ancillary data on important soil characteristics. The database is sub-divided into 28 soil-crop combinations, covering four soil types and seven crop groups. Statistical analyses showed that transfer factors for radiocesium could not generally be predicted as a function of climatic region, type of experiment, age of contamination, or silt characteristics.more » However, significant relationships accounting for more than 30% of the variability in transfer factor were identified between transfer factors for radiostrontium and soil pH/organic matter status for a few soil-crop combinations. Best estimate transfer factors for radiocesium and radiostrontium were calculated for 28 soil-crop combinations, based on their geometric means: only the edible parts were considered. To predict the likely value of future individual transfer factors, 95% confidence intervals were also derived. A comparison of best estimate transfer factors derived in this study with recommended values published by the International Union of Radioecologists in 1989 and 1992 was made for comparable soil-crop groupings. While there were no significant differences between the best estimate values derived in this study and the 1992 data, radiological assessments that still use 1989 data may be unnecessarily cautious.« less

Assessment of runoff response to landscape changes in the San Pedro subbasin (Nayarit, Mexico) using remote sensing data and GIS.

PubMed

Hernández-Guzmán, Rafael; Ruiz-Luna, Arturo; Berlanga-Robles, César Alejandro

2008-10-01

Results on runoff estimates as a response to land-use and land-cover changes are presented. We used remote sensing and GIS techniques with rainfall time-series data, spatial ancillary information, and the curve-number method (NRCS-CN) to assess the runoff response in the San Pedro subbasin. Thematic maps with eight land-cover classes derived from satellite imagery classification (1973, 1990, and 2000) and hydrologic soil-group maps were used as the input for the runoff calculation. About 20% to 25% of the subbasin landscape has changed since 1973, mainly as consequence of the growth of agriculture. Forest is the main cover, although further analyses indicate that forest is degrading from good to poor conditions when evaluated as a function of the spectral response. Soils with low infiltration rates, classified as the hydrological soil-group "C", were dominant in the area (52%). The overlaying of all the hydrological soil groups with the land-use map produced a total of 43 hydro-group and land-use categories for which runoff was calculated using the curve-number method. Estimates of total runoff volumes (26 x 10(6) m3) were similar for the three dates analyzed in spite of landscape changes, but there were temporal variations among the hydro-group and land-use categories as a consequence. Changes are causing the rise of covers with high runoff potential and the increase of runoff depth is expected, but it can be reversed by different management of subbasin hydro-groups and land-use units.

Quicklime-induced changes of soil properties: Implications for enhanced remediation of volatile chlorinated hydrocarbon contaminated soils via mechanical soil aeration.

PubMed

Ma, Yan; Dong, Binbin; He, Xiaosong; Shi, Yi; Xu, Mingyue; He, Xuwen; Du, Xiaoming; Li, Fasheng

2017-04-01

Mechanical soil aeration is used for soil remediation at sites contaminated by volatile organic compounds. However, the effectiveness of the method is limited by low soil temperature, high soil moisture, and high soil viscosity. Combined with mechanical soil aeration, quicklime has a practical application value related to reinforcement remediation and to its action in the remediation of soil contaminated with volatile organic compounds. In this study, the target pollutant was trichloroethylene, which is a volatile chlorinated hydrocarbon pollutant commonly found in contaminated soils. A restoration experiment was carried out, using a set of mechanical soil-aeration simulation tests, by adding quicklime (mass ratios of 3, 10, and 20%) to the contaminated soil. The results clearly indicate that quicklime changed the physical properties of the soil, which affected the environmental behaviour of trichloroethylene in the soil. The addition of CaO increased soil temperature and reduced soil moisture to improve the mass transfer of trichloroethylene. In addition, it improved the macroporous cumulative pore volume and average pore size, which increased soil permeability. As soil pH increased, the clay mineral content in the soils decreased, the cation exchange capacity and the redox potential decreased, and the removal of trichloroethylene from the soil was enhanced to a certain extent. After the addition of quicklime, the functional group COO of soil organic matter could interact with calcium ions, which increased soil polarity and promoted the removal of trichloroethylene. Copyright © 2017 Elsevier Ltd. All rights reserved.

Underestimation of soil carbon stocks by Yasso07, Q, and CENTURY models in boreal forest linked to overlooking site fertility

NASA Astrophysics Data System (ADS)

Ťupek, Boris; Ortiz, Carina; Hashimoto, Shoji; Stendahl, Johan; Dahlgren, Jonas; Karltun, Erik; Lehtonen, Aleksi

2016-04-01

The soil organic carbon stock (SOC) changes estimated by the most process based soil carbon models (e.g. Yasso07, Q and CENTURY), needed for reporting of changes in soil carbon amounts for the United Nations Framework Convention on Climate Change (UNFCCC) and for mitigation of anthropogenic CO2 emissions by soil carbon management, can be biased if in a large mosaic of environments the models are missing a key factor driving SOC sequestration. To our knowledge soil nutrient status as a missing driver of these models was not tested in previous studies. Although, it's known that models fail to reconstruct the spatial variation and that soil nutrient status drives the ecosystem carbon use efficiency and soil carbon sequestration. We evaluated SOC stock estimates of Yasso07, Q and CENTURY process based models against the field data from Swedish Forest Soil National Inventories (3230 samples) organized by recursive partitioning method (RPART) into distinct soil groups with underlying SOC stock development linked to physicochemical conditions. These models worked for most soils with approximately average SOC stocks, but could not reproduce higher measured SOC stocks in our application. The Yasso07 and Q models that used only climate and litterfall input data and ignored soil properties generally agreed with two third of measurements. However, in comparison with measurements grouped according to the gradient of soil nutrient status we found that the models underestimated for the Swedish boreal forest soils with higher site fertility. Accounting for soil texture (clay, silt, and sand content) and structure (bulk density) in CENTURY model showed no improvement on carbon stock estimates, as CENTURY deviated in similar manner. We highlighted the mechanisms why models deviate from the measurements and the ways of considering soil nutrient status in further model development. Our analysis suggested that the models indeed lack other predominat drivers of SOC stabilization presumably the different role of microbes in carbon mineralization in relation to nitrogen availability and the organo - mineral carbon associations. Our results imply that the role of soil nutrient status as a regulator of carbon mineralization has to be re-evaluated, because we should have models that have their steady state SOC stocks at right level in order to predict future SOC change.

Pre-inoculation by an arbuscular mycorrhizal fungus enhances male reproductive output of Cucurbita foetidissima

Treesearch

Rosemary L. Pendleton

2000-01-01

Male and female reproductive output of Cucurbita foetidissima, a gynodioecious native perennial, was examined in a 2-yr greenhouse/outplanting study. Plants were divided into three treatment groups: (1) a lowphosphorus (P) soil mix control; (2) a low-P soil mix with the addition of mycorrhizal inoculum (Glomus intraradices); and (3) a high-P soil mix. Plants were...

Cultural Patterns of Soil Understanding

NASA Astrophysics Data System (ADS)

Patzel, Nikola; Feller, Christian

2017-04-01

Living soil supports all terrestrial ecosystems. The only global threat to earth's soils comes from human societies' land use and resource consuming activities. Soil perception and understanding by soil scientists are mainly drawn from biophysical parameters and found within Cartesian rationality, and not, or much less consciously from its rather intangible cultural dimension. But nevertheless, human soil perception, soil awareness, and soil relation are a cultural phenomenon, too. Aiming at soil awareness and education, it is of first order importance for the soil science community and the IUSS to study, discuss and communicate also about the cultural perceptions and representations of soil. For any society, cultural patterns in their relation to soil encompass: (i) General culturally underlying structures like (religious or 'secular') myths and belief systems. (ii) The personal, individual relation to/with and behaviour towards soil. This includes implicit concepts of soil being part integral concepts of landscape because the large majority of humans don't see soil as a distinct object. This communication would be to make evident: (i) the importance of cultural patterns and psychic/psychological background concerning soil, by case studies and overviews on different cultural areas, (ii) the necessity to develop reflections on this topic as well to communicate about soil with large public, as to raise awareness soil scientists to the cultural dimension of soils. A working group was recently founded at IUSS (Division 4) on this topic.

Microbial carbon turnover in the plant-rhizosphere-soil continuum

NASA Astrophysics Data System (ADS)

Malik, Ashish; Dannert, Helena; Griffiths, Robert; Thomson, Bruce; Gleixner, Gerd

2014-05-01

Soil microbial biomass contributes significantly to maintenance of soil organic matter (SOM). It is well known that biochemical fractions of soil microorganisms have varying turnover and therefore contribute differentially to soil C storage. Here we compare the turnover rates of different microbial biochemical fractions using a pulse chase 13CO2 plant labelling experiment. The isotope signal was temporally traced into rhizosphere soil microorganisms using the following biomarkers: DNA, RNA, fatty acids and chloroform fumigation extraction derived microbial biomass size classes. C flow into soil microbial functional groups was assessed through phospholipid and neutral lipid fatty acid (PLFA/NLFA) analyses. Highest 13C enrichment was seen in the low molecular weight (LMW) size class of microbial biomass (Δδ13C =151) and in nucleic acids (DNA: 38o RNA: 66) immediately after the pulse followed by a sharp drop. The amount of 13C in the high molecular weight (HMW) microbial biomass (17-81) and total fatty acids (32-54) was lower initially and stayed relatively steady over the 4 weeks experimental period. We found significant differences in turnover rates of different microbial biochemical and size fractions. We infer that LMW cytosolic soluble compounds are rapidly metabolized and linked to respiratory C fluxes, whereas mid-sized products of microbial degradation and HMW polymeric compounds have lower renewal rate in that order. The turnover of cell wall fatty acids was also very slow. DNA and RNA showed faster turnover rate; and as expected RNA renewal was the fastest due to its rapid production by active microorganisms independent of cell replication. 13C incorporation into different functional groups confirmed that mutualistic arbuscular mycorrhizal fungi rely on root C and are important in the initial plant C flux. We substantiated through measurements of isotope incorporation into bacterial RNA that rhizosphere bacteria are also important in the initial C conduit from plants. Other saprophytic fungi and bacteria show a delayed 13C incorporation pattern which could suggest secondary 13C assimilation often indicative of trophic interactions. Thus, different soil microbial biochemical fractions as well as functional groups show differential C turnover which could have implications on soil C storage.

The importance of nano-porosity in the stalk-derived biochar to the sorption of 17β-estradiol and retention of it in the greenhouse soil.

PubMed

Zhang, Fengsong; Li, Yanxia; Zhang, Guixiang; Li, Wei; Yang, Lingsheng

2017-04-01

Natural estrogens in greenhouse soils with long-term manure application are becoming a potential threat to adjacent aquatic environment. Porous stalk biochar as a cost-effective adsorbent of estrogen has a strong potential to reduce their transportation from soil to waters. But the dominant adsorption mechanism of estrogen to stalk biochars and retention of estrogen by greenhouse soils amended with biochar are less well known. Element, function groups, total surface area (SA total ), nano-pores of stalk biochars, and chemical structure of 17β-estradiol (E2, length 1.20 nm, width 0.56 nm, thickness 0.48 nm) are integrated in research on E2 sorption behavior in three stalk-derived biochars produced from wheat straw (WS), rice straw (RS), and corn straw (CS), and greenhouse soils amended with optimal biochar. The three biochars had comparable H/C and (O + N)/C, while their aromatic carbon contents and total surface areas (SA total ) both varied as CS > WS > RS. However, WS had the highest sorption capacity (logK oc ), sorption affinity (K f ), and strongest nonlinearity (n). Additionally, the variation of Langmuir maximum adsorption capacity (Q 0 ) was consistent with the trend for SA 1.2-20 (WS > RS > CS) but contrary to the trend for SA total and SA <1.2 (CS > WS > RS). These results indicate that pore-filling dominates the sorption of E2 by biochars and exhibits "sieving effect" and length-directionality-specific via H-bonding between -OH groups on the both ends of E2 in the length direction and polar groups on the inner surface of pores. After the addition of wheat straw biochar, the extent of increase in the sorption affinity for E2 in the soil with low OC content was higher than those in the soil with high OC content. Therefore, the effectiveness for the wheat straw biochar mitigating the risk of E2 in greenhouse soil depended on the compositions of soil, especially organic matter.

Archaeal communities in boreal forest tree rhizospheres respond to changing soil temperatures.

PubMed

Bomberg, Malin; Münster, Uwe; Pumpanen, Jukka; Ilvesniemi, Hannu; Heinonsalo, Jussi

2011-07-01

Temperature has generally great effects on both the activity and composition of microbial communities in different soils. We tested the impact of soil temperature and three different boreal forest tree species on the archaeal populations in the bulk soil, rhizosphere, and mycorrhizosphere. Scots pine, silver birch, and Norway spruce seedlings were grown in forest humus microcosms at three different temperatures, 7-11.5°C (night-day temperature), 12-16°C, and 16-22°C, of which 12-16°C represents the typical mid-summer soil temperature in Finnish forests. RNA and DNA were extracted from indigenous ectomycorrhiza, non-mycorrhizal long roots, and boreal forest humus and tested for the presence of archaea by nested PCR of the archaeal 16S rRNA gene followed by denaturing gradient gel electrophoresis (DGGE) profiling and sequencing. Methanogenic Euryarchaeota belonging to Methanolobus sp. and Methanosaeta sp. were detected on the roots and mycorrhiza. The most commonly detected archaeal 16S rRNA gene sequences belonged to group I.1c Crenarchaeota, which are typically found in boreal and alpine forest soils. Interestingly, also one sequence belonging to group I.1b Crenarchaeota was detected from Scots pine mycorrhiza although sequences of this group are usually found in agricultural and forest soils in temperate areas. Tree- and temperature-related shifts in the archaeal population structure were observed. A clear decrease in crenarchaeotal DGGE band number was seen with increasing temperature, and correspondingly, the number of euryarchaeotal DGGE bands, mostly methanogens, increased. The greatest diversity of archaeal DGGE bands was detected in Scots pine roots and mycorrhizas. No archaea were detected from humus samples from microcosms without tree seedling, indicating that the archaea found in the mycorrhizosphere and root systems were dependent on the plant host. The detection of archaeal 16S rRNA gene sequences from both RNA and DNA extractions show that the archaeal populations were living and that they may have significant contribution to the methane cycle in boreal forest soil, especially when soil temperatures rise.

[Characteristics of floor litter and soil arthropod community in different types ot subtropical forest in Ailao Mountain of Yunnan, Southwest China].

PubMed

Yang, Zhao; Yang, Xiao-Dong

2011-11-01

By using line transect method, an investigation was conducted on the floor litter and soil arthropod community in a mid mountain wet evergreen broad-leaved forest, a mossy dwarf forest, and a Populus bonatii forest in Ailao Mountain of Yunnan in April (dry and hot season), June (rainy season), and December (dry and cold season), 2005. In both dry and rainy seasons, the existing floor litter mass, C storage, and C/N ratio in the three forests all increased in the order of mossy dwarf forest > P. bonatii forest > evergreen broad-leaved forest, but the N storage had less difference. In the floor litter layer of the forests, Acari and Collembola were the dominant groups of soil arthropod community, while Diptera larvae, Coleoptera, ants, and Homoptera were the common groups. The Sorenson coefficients of soil arthropod community in the three forests were extremely great. No significant differences were observed in the soil arthropod density (ind x m(-2)) in the floor litter layer among the three forests, but the relative density (ind x g(-1)) of soil arthropods was higher in the evergreen broad-leaved forest and P. bonatii forest than in the mossy dwarf forest. In the three forests, the density of soil arthropods was significantly higher in dry season than in rainy season, but the Shannon diversity index had less difference. There were significant positive correlations between the existing floor litter mass and the individual density (ind x m(-2)) and dominant groups of soil arthropod communities in dry and hot season (April), but negative correlations between the existing floor litter mass and the relative density (ind x g(-1)) of soil arthropod communities and Acari in dry and cold season (December). The individual densities of Collembola and Coleoptera also had positive correlations with the N storage of the existing floor litter mass in the three forests. It was considered that the floor litter and the development of soil arthropod community in the litter layer of the subtropical forests in Ailao Mountain had a close relation with the vegetation structure of the forests, and the individual density and the diversity of the soil arthropod community were controlled by the floor litter, whereas the environmental factors such as temperature and moisture in the forests also had obvious effects on the seasonal dynamics of the individual density of the soil arthropods.

Effects of Heavy Metals from Soil and Dust Source on DNA Damage of the Leymus chinensis Leaves in Coal-Mining Area in Northwest China

PubMed Central

Li, Tianxin; Zhang, Minjie; Lu, Zhongming; Herman, Uwizeyimana; Mumbengegwi, Dzivaidzo; Crittenden, John

2016-01-01

Air and soil pollution from mining activities has been considered as a critical issue to the health of living organisms. However, few efforts have been made in distinguishing the main pathway of organism genetic damage by heavy metals related to mining activities. Therefore, we investigated the genetic damage of Leymus chinensis leaf cells, the air particulate matter (PM) contents, and concentrations of the main heavy metals (Pb, Cd, Cr, Hg) in soil and foliar dust samples collected from seven experiment points at the core mining area and one control point 20 kilometers away from the core mining area in Inner Mongolia in 2013. Comet assay was used to test the genetic damage of the Leymus chinensis leaf cells; the Tail DNA% and Tail Moment were used to characterize the genetic damage degree of the plant cells. The comet assay results showed that the cell genetic damage ratio was up to 77.0% in experiment points but was only 35.0% in control point. The control point also had the slight Tail DNA% and Tail Moment values than other experiment groups. The cell damage degree of the control group was 0.935 and experiment groups were 1.299–1.815. The geo-accumulation index and comperehensive pollution index(CPI) were used to characterize heavy metal pollution in foliar dust samples, and single factor pollution index and CPI were used to characterize the heavy metal pollution in soil samples. The CPIfoliar dust of control group was 0.36 and experiment groups were 1.45–2.57; the CPIsoil of control group was 0.04 and experiment groups were 0.07–0.12. The results of correlation analyze showed that Air Quality Index (AQI) -CPIfoliar dust(r = 0.955**)>Damage degree-CPIfoliar dust(r = 0.923**)>Damage degree-AQI(r = 0.908**)>Damage degree-CPIsoil (r = 0.824*). The present research proved that mining activity had a high level of positive correlation with organism genetic damage caused by heavy metals through comparing with the control point; soil and atmosphere were both the important action pathway for heavy metal induced genetic damage in mining area. Furthermore, heavy metal contents in foliar dust showed a higher positive correlation with genetic damage than when compared with soil. This means the heavy metal contents that L.chinensis absorbed through respiration from the atmosphere could make more serious genetic damage than when absorbed by root systems from soil in the mining area. This study can provide theoretical support for research on plant genetic damage mechanisms and exposure pathways induced by environmental pollution. PMID:27935969

Effects of Heavy Metals from Soil and Dust Source on DNA Damage of the Leymus chinensis Leaves in Coal-Mining Area in Northwest China.

PubMed

Li, Tianxin; Zhang, Minjie; Lu, Zhongming; Herman, Uwizeyimana; Mumbengegwi, Dzivaidzo; Crittenden, John

2016-01-01

Air and soil pollution from mining activities has been considered as a critical issue to the health of living organisms. However, few efforts have been made in distinguishing the main pathway of organism genetic damage by heavy metals related to mining activities. Therefore, we investigated the genetic damage of Leymus chinensis leaf cells, the air particulate matter (PM) contents, and concentrations of the main heavy metals (Pb, Cd, Cr, Hg) in soil and foliar dust samples collected from seven experiment points at the core mining area and one control point 20 kilometers away from the core mining area in Inner Mongolia in 2013. Comet assay was used to test the genetic damage of the Leymus chinensis leaf cells; the Tail DNA% and Tail Moment were used to characterize the genetic damage degree of the plant cells. The comet assay results showed that the cell genetic damage ratio was up to 77.0% in experiment points but was only 35.0% in control point. The control point also had the slight Tail DNA% and Tail Moment values than other experiment groups. The cell damage degree of the control group was 0.935 and experiment groups were 1.299-1.815. The geo-accumulation index and comperehensive pollution index(CPI) were used to characterize heavy metal pollution in foliar dust samples, and single factor pollution index and CPI were used to characterize the heavy metal pollution in soil samples. The CPIfoliar dust of control group was 0.36 and experiment groups were 1.45-2.57; the CPIsoil of control group was 0.04 and experiment groups were 0.07-0.12. The results of correlation analyze showed that Air Quality Index (AQI) -CPIfoliar dust(r = 0.955**)>Damage degree-CPIfoliar dust(r = 0.923**)>Damage degree-AQI(r = 0.908**)>Damage degree-CPIsoil (r = 0.824*). The present research proved that mining activity had a high level of positive correlation with organism genetic damage caused by heavy metals through comparing with the control point; soil and atmosphere were both the important action pathway for heavy metal induced genetic damage in mining area. Furthermore, heavy metal contents in foliar dust showed a higher positive correlation with genetic damage than when compared with soil. This means the heavy metal contents that L.chinensis absorbed through respiration from the atmosphere could make more serious genetic damage than when absorbed by root systems from soil in the mining area. This study can provide theoretical support for research on plant genetic damage mechanisms and exposure pathways induced by environmental pollution.

Soil networks become more connected and take up more carbon as nature restoration progresses.

PubMed

Morriën, Elly; Hannula, S Emilia; Snoek, L Basten; Helmsing, Nico R; Zweers, Hans; de Hollander, Mattias; Soto, Raquel Luján; Bouffaud, Marie-Lara; Buée, Marc; Dimmers, Wim; Duyts, Henk; Geisen, Stefan; Girlanda, Mariangela; Griffiths, Rob I; Jørgensen, Helene-Bracht; Jensen, John; Plassart, Pierre; Redecker, Dirk; Schmelz, Rűdiger M; Schmidt, Olaf; Thomson, Bruce C; Tisserant, Emilie; Uroz, Stephane; Winding, Anne; Bailey, Mark J; Bonkowski, Michael; Faber, Jack H; Martin, Francis; Lemanceau, Philippe; de Boer, Wietse; van Veen, Johannes A; van der Putten, Wim H

2017-02-08

Soil organisms have an important role in aboveground community dynamics and ecosystem functioning in terrestrial ecosystems. However, most studies have considered soil biota as a black box or focussed on specific groups, whereas little is known about entire soil networks. Here we show that during the course of nature restoration on abandoned arable land a compositional shift in soil biota, preceded by tightening of the belowground networks, corresponds with enhanced efficiency of carbon uptake. In mid- and long-term abandoned field soil, carbon uptake by fungi increases without an increase in fungal biomass or shift in bacterial-to-fungal ratio. The implication of our findings is that during nature restoration the efficiency of nutrient cycling and carbon uptake can increase by a shift in fungal composition and/or fungal activity. Therefore, we propose that relationships between soil food web structure and carbon cycling in soils need to be reconsidered.

The influence of Aster x salignus Willd. Invasion on the diversity of soil yeast communities

NASA Astrophysics Data System (ADS)

Glushakova, A. M.; Kachalkin, A. V.; Chernov, I. Yu.

2016-07-01

The annual dynamics of yeast communities were studied in the soddy-podzolic soil under the thickets of Aster x salignus Willd., one of the widespread invasive plant species in central Russia. Yeast groups in the soils under continuous aster thickets were found to differ greatly from the yeast communities in the soils under the adjacent indigenous meadow vegetation. In both biotopes the same species ( Candida vartiovaarae, Candida sake, and Cryptococcus terreus) are dominants. However, in the soils under indigenous grasses, eurybiontic yeasts Rhodotorula mucilaginosa, which almost never occur in the soil under aster, are widespread. In the soil under aster, the shares of other typical epiphytic and pedobiontic yeast fungi (ascomycetic species Wickerhamomyces aniomalus, Barnettozyma californica and basidiomycetic species Cystofilobasidium macerans, Guehomyces pullulans) significantly increase. Thus, the invasion of Aster x salignus has a clear effect on soil yeast complexes reducing their taxonomic and ecological diversity.

Hunting for cultivable Micromonospora strains in soils of the Atacama Desert.

PubMed

Carro, Lorena; Razmilic, Valeria; Nouioui, Imen; Richardson, Lee; Pan, Che; Golinska, Patrycja; Asenjo, Juan A; Bull, Alan T; Klenk, Hans-Peter; Goodfellow, Michael

2018-02-26

Innovative procedures were used to selectively isolate small numbers of Micromonospora strains from extreme hyper-arid and high altitude Atacama Desert soils. Micromonosporae were recognised on isolation plates by their ability to produce filamentous microcolonies that were strongly attached to the agar. Most of the isolates formed characteristic orange colonies that lacked aerial hyphae and turned black on spore formation, whereas those from the high altitude soil were dry, blue-green and covered by white aerial hyphae. The isolates were assigned to seven multi- and eleven single-membered groups based on BOX-PCR profiles. Representatives of the groups were assigned to either multi-membered clades that also contained marker strains or formed distinct phyletic lines in the Micromonospora 16S rRNA gene tree; many of the isolates were considered to be putatively novel species of Micromonospora. Most of the isolates from the high altitude soils showed activity against wild type strains of Bacillus subtilis and Pseudomonas fluorescens while those from the rhizosphere of Parastrephia quadrangulares and from the Lomas Bayas hyper-arid soil showed resistance to UV radiation.

Uptake of explosives from contaminated soil by existing vegetation at the Joliet Army Ammunition Plant

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schneider, J.F.; Tomczyk, N.A.; Zellmer, S.D.

1994-01-01

This study examines the uptake of explosives by existing vegetation growing in TNT-contaminated soils on Group 61 at the Joliet Army Ammunition Plant (JAAP). The soils in this group were contaminated more than 40 years ago. In this study, existing plant materials and soil from the root zone were sampled from 15 locations and analyzed to determine TNT uptake by plants under natural field conditions. Plant materials were separated by species if more than one species was present at a sampling location. Standard methods were used to determine concentrations of explosives, their derivatives, and metabolites in the soil samples. Plantmore » materials were also analyzed. No. explosives were detected in the aboveground portion of any plant sample. However, the results indicate that TNT, 2-amino DNT, and/or 4-amino DNT were found in some root samples of false boneset (Kuhnia eupatorioides), teasel (Dipsacus sylvestris), and bromegrass (Bromus inermis). It is possible that slight soil contamination remained on the roots, especially in the case of the very fine roots for species like bromegrass, where washing was difficult. The presence of 2-amino DNT and 4-amino DNT, which could be plant metabolites of TNT, increases the likelihood that explosives were taken up by plant roots, as opposed to their presence resulting from external soil contamination.« less

Microbial community structure and soil pH correspond to methane production in Arctic Alaska soils.

PubMed

Wagner, Robert; Zona, Donatella; Oechel, Walter; Lipson, David

2017-08-01

While there is no doubt that biogenic methane production in the Arctic is an important aspect of global methane emissions, the relative roles of microbial community characteristics and soil environmental conditions in controlling Arctic methane emissions remains uncertain. Here, relevant methane-cycling microbial groups were investigated at two remote Arctic sites with respect to soil potential methane production (PMP). Percent abundances of methanogens and iron-reducing bacteria correlated with increased PMP, while methanotrophs correlated with decreased PMP. Interestingly, α-diversity of the methanogens was positively correlated with PMP, while β-diversity was unrelated to PMP. The β-diversity of the entire microbial community, however, was related to PMP. Shannon diversity was a better correlate of PMP than Simpson diversity across analyses, while rarefied species richness was a weak correlate of PMP. These results demonstrate the following: first, soil pH and microbial community structure both probably control methane production in Arctic soils. Second, there may be high functional redundancy in the methanogens with regard to methane production. Third, iron-reducing bacteria co-occur with methanogens in Arctic soils, and iron-reduction-mediated effects on methanogenesis may be controlled by α- and β-diversity. And finally, species evenness and rare species abundances may be driving relationships between microbial groups, influencing Arctic methane production. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Assessment of water-soluble thiourea-formaldehyde (WTF) resin for stabilization/solidification (S/S) of heavy metal contaminated soils.

PubMed

Liu, She-Jiang; Jiang, Jia-Yu; Wang, Shen; Guo, Yu-Peng; Ding, Hui

2018-03-15

Stabilization/Solidification (S/S) can be regarded as necessary for remediation of heavy metal contaminated soil. There is, however, solid agent is not very convenient to use. Water-soluble thiourea-formaldehyde (WTF) is a novel chelating agent, which has more practical applications. The process of WTF resin for S/S process of heavy metal contaminated soils was studied. Laboratory-prepared slurries, made of field soils spiked with Cd 2+ and Cr 6+ were treated with WTF resin. The toxicity characteristic leaching procedure (TCLP) showed that with 2 wt% WTF, in the neutral condition of soil after treatment for 7 d, the leaching concentrations of Cd 2+ and Cr 6+ in contaminated soil were decreased by 80.3% and 92.6% respectively. Moreover, Tessier sequence extraction procedure showed WTF resin reduced the leaching concentration by transforming heavy metal from exchange form to organic form. The structure of WTF is obtained according to elemental analysis result and reaction mechanism. Through analysis of the infrared spectrogram of WTF and WTF heavy mental chelating precipitation, WTF can form stable chelate with heavy mental through coordination. The significant groups are hydroxyl, nitrogen and sulphur function groups in WTF mainly. Toxicology test revealed that the WTF resin is nontoxic to microorganism in the soils. Copyright © 2017 Elsevier B.V. All rights reserved.

Plant identity and shallow soil moisture are primary drivers of stomatal conductance in the savannas of Kruger National Park.

PubMed

Tobin, Rebecca L; Kulmatiski, Andrew

2018-01-01

Our goal was to describe stomatal conductance (gs) and the site-scale environmental parameters that best predict gs in Kruger National Park (KNP), South Africa. Dominant grass and woody species were measured over two growing seasons in each of four study sites that represented the natural factorial combination of mean annual precipitation [wet (750 mm) or dry (450 mm)] and soil type (clay or sand) found in KNP. A machine-learning (random forest) model was used to describe gs as a function of plant type (species or functional group) and site-level environmental parameters (CO2, season, shortwave radiation, soil type, soil moisture, time of day, vapor pressure deficit and wind speed). The model explained 58% of the variance among 6,850 gs measurements. Species, or plant functional group, and shallow (0-20 cm) soil moisture had the greatest effect on gs. Atmospheric drivers and soil type were less important. When parameterized with three years of observed environmental data, the model estimated mean daytime growing season gs as 68 and 157 mmol m-2 sec-1 for grasses and woody plants, respectively. The model produced here could, for example, be used to estimate gs and evapotranspiration in KNP under varying climate conditions. Results from this field-based study highlight the role of species identity and shallow soil moisture as primary drivers of gs in savanna ecosystems of KNP.

Land use type significantly affects microbial gene transcription in soil.

PubMed

Nacke, Heiko; Fischer, Christiane; Thürmer, Andrea; Meinicke, Peter; Daniel, Rolf

2014-05-01

Soil microorganisms play an essential role in sustaining biogeochemical processes and cycling of nutrients across different land use types. To gain insights into microbial gene transcription in forest and grassland soil, we isolated mRNA from 32 sampling sites. After sequencing of generated complementary DNA (cDNA), a total of 5,824,229 sequences could be further analyzed. We were able to assign nonribosomal cDNA sequences to all three domains of life. A dominance of bacterial sequences, which were affiliated to 25 different phyla, was found. Bacterial groups capable of aromatic compound degradation such as Phenylobacterium and Burkholderia were detected in significantly higher relative abundance in forest soil than in grassland soil. Accordingly, KEGG pathway categories related to degradation of aromatic ring-containing molecules (e.g., benzoate degradation) were identified in high abundance within forest soil-derived metatranscriptomic datasets. The impact of land use type forest on community composition and activity is evidently to a high degree caused by the presence of wood breakdown products. Correspondingly, bacterial groups known to be involved in lignin degradation and containing ligninolytic genes such as Burkholderia, Bradyrhizobium, and Azospirillum exhibited increased transcriptional activity in forest soil. Higher solar radiation in grassland presumably induced increased transcription of photosynthesis-related genes within this land use type. This is in accordance with high abundance of photosynthetic organisms and plant-infecting viruses in grassland.

Drought resistance in early and late secondary successional species from a tropical dry forest: the interplay between xylem resistance to embolism, sapwood water storage and leaf shedding.

PubMed

Pineda-García, Fernando; Paz, Horacio; Meinzer, Frederick C

2013-02-01

The mechanisms of drought resistance that allow plants to successfully establish at different stages of secondary succession in tropical dry forests are not well understood. We characterized mechanisms of drought resistance in early and late-successional species and tested whether risk of drought differs across sites at different successional stages, and whether early and late-successional species differ in resistance to experimentally imposed soil drought. The microenvironment in early successional sites was warmer and drier than in mature forest. Nevertheless, successional groups did not differ in resistance to soil drought. Late-successional species resisted drought through two independent mechanisms: high resistance of xylem to embolism, or reliance on high stem water storage capacity. High sapwood water reserves delayed the effects of soil drying by transiently decoupling plant and soil water status. Resistance to soil drought resulted from the interplay between variations in xylem vulnerability to embolism, reliance on sapwood water reserves and leaf area reduction, leading to a tradeoff of avoidance against tolerance of soil drought, along which successional groups were not differentiated. Overall, our data suggest that ranking species' performance under soil drought based solely on xylem resistance to embolism may be misleading, especially for species with high sapwood water storage capacity. © 2012 Blackwell Publishing Ltd.

The effect of heavy metal concentration and soil pH on the abundance of selected microbial groups within ArcelorMittal Poland steelworks in Cracow.

PubMed

Lenart, Anna; Wolny-Koładka, Katarzyna

2013-01-01

The present study aimed to identify the effect of heavy metal concentration and soil pH on the abundance of the selected soil microorganisms within ArcelorMittal Poland steelworks, Cracow. The analysis included 20 soil samples, where the concentration of Fe, Zn, Cd, Pb, Ni, Cu, Mn, Cr and soil pH were evaluated together with the number of mesophilic bacteria, fungi, Actinomycetes and Azotobacter spp. In the majority of samples soil pH was alkaline. The limits of heavy metals exceeded in eight samples and in one sample, the concentration of Zn exceeded 31-fold. Chromium was the element which most significantly limited the number of bacteria and Actinomycetes.

Mercury in the Soil of the Tunka Depression

NASA Astrophysics Data System (ADS)

Lyapina, E. E.; Cherkashina, A. A.

2018-01-01

The work evaluates the general distribution of mercury in the soil cover of the Tunkinskaya depression (the Republic of Buryatia, the national park "Tunkinsky"). For this purpose, its gross contents in natural and agrogenically transformed soils were studied: plow lands, fallow lands, hayfields and pastures. The physico-technical characteristics of soils, the content of organic carbon, group composition of humus are determined. The method of processing the results included the calculation of the ecological and geochemical parameters: the concentration coefficient relative to the background, MAC, Clark concentration relative to the Earth’s crust, the Earth’s soils, the identification of the relationship with the physical and technical characteristics of the soil, and the content of C02, CO2 carbonates, fulvic and humic acids.

The health risk levels of different age groups of residents living in the vicinity of municipal solid waste incinerator posed by PCDD/Fs in atmosphere and soil.

PubMed

Li, Jiafu; Zhang, Ying; Sun, Tingting; Hao, Huawei; Wu, Hao; Wang, Lili; Chen, Yuxing; Xing, Limin; Niu, Zhiguang

2018-08-01

In our study, health risk levels of different age groups of residents living in the vicinity of a municipal solid waste incinerator (MSWI) posed by polychlorinated dibenzo-p-dioxins and polychlorinated dibenzofurans (PCDD/Fs) in atmosphere and soil were evaluated. The toxic equivalent concentrations of PCDD/Fs (TEQ) in surrounding atmosphere and soil of studied MSWI were 0.05-0.12 pg I-TEQ Nm -3 and 7.622-15.450 ng I-TEQ kg -1 , respectively. The PCDFs/PCDDs (F/D) values of PCDD/Fs in surrounding atmosphere of studied MSWI ranged from 0.40 to 5.90 with a mean of 1.80, suggesting that the PCDD/Fs mainly came from combustion sources and studied MSWI could be a key source of PCDD/Fs in surrounding atmosphere. The F/D ratios of PCDD/Fs in surrounding soil ranged from 0.18 to 1.81 with a mean of 0.90, suggesting combustion is not the mainly sources of PCDD/Fs in surrounding soil, and studied MSWI may have limited influence on PCDD/Fs in surrounding soil. O8CDD and 2,3,4,7,8-P5CDF could be the total PCDD/Fs and TEQ indicators in surrounding atmosphere of studied MSWI, respectively. The carcinogenic risk (CR) values of PCDD/Fs in surrounding atmosphere and soil for children, teens and adults were 1.24E-06, 9.06E-07 and 4.41E-06, respectively, suggesting that the potential cancer risk occurred but the risk was at acceptable levels for both children and adults (<1.00E-05), and the cancer risk for teens was negligible (<1.00E-06). The non-carcinogenic risk (non-CR) values of three age groups were lower than 1, indicating that no obvious non-carcinogenic effects occurred. Inhalation of air was the largest contributor of health risk (both CR and non-CR) for three age groups. In addition, a comparison of the health risk between PCDD/Fs and other emerging contaminants and traditional pollutants in soil and atmosphere was performed, which will help us have a good view of the health risk levels of PCDD/Fs in surrounding environment of MWSI. Copyright © 2018 Elsevier B.V. All rights reserved.

Spatial glyphosate and AMPA redistribution on the soil surface driven by sediment transport processes - A flume experiment.

PubMed

Bento, Célia P M; Commelin, Meindert C; Baartman, Jantiene E M; Yang, Xiaomei; Peters, Piet; Mol, Hans G J; Ritsema, Coen J; Geissen, Violette

2018-03-01

This study investigates the influence of small-scale sediment transport on glyphosate and AMPA redistribution on the soil surface and on their off-site transport during water erosion events. Both a smooth surface (T1) and a surface with "seeding lines on the contour" (T2) were tested in a rainfall simulation experiment using soil flumes (1 × 0.5 m) with a 5% slope. A dose of 178 mg m -2 of a glyphosate-based formulation (CLINIC ® ) was applied on the upper 0.2 m of the flumes. Four 15-min rainfall events (RE) with 30-min interval in between and a total rainfall intensity of 30 mm h -1 were applied. Runoff samples were collected after each RE in a collector at the flume outlet. At the end of the four REs, soil and sediment samples were collected in the application area and in four 20 cm-segments downslope of the application area. Samples were collected according to the following visually distinguished soil surface groups: light sedimentation (LS), dark sedimentation (DS), background and aggregates. Results showed that runoff, suspended sediment and associated glyphosate and AMPA off-site transport were significantly lower in T2 than in T1. Glyphosate and AMPA off-site deposition was higher for T2 than for T1, and their contents on the soil surface decreased with increasing distance from the application area for all soil surface groups and in both treatments. The LS and DS groups presented the highest glyphosate and AMPA contents, but the background group contributed the most to the downslope off-site deposition. Glyphosate and AMPA off-target particle-bound transport was 9.4% (T1) and 17.8% (T2) of the applied amount, while water-dissolved transport was 2.8% (T1) and 0.5% (T2). Particle size and organic matter influenced the mobility of glyphosate and AMPA to off-target areas. These results indicate that the pollution risk of terrestrial and aquatic environments through runoff and deposition can be considerable. Copyright © 2017 Elsevier Ltd. All rights reserved.

Extraction behavior of metallic contaminants and soil constituents from contaminated soils.

PubMed

Tokunaga, S; Park, S W; Ulmanu, M

2005-06-01

With an aim of developing an effective remediation technology for soils contaminated by heavy metals and metalloids, the extraction behavior of metallic contaminants as well as those of soil constituents was studied on a laboratory scale. Three contaminated soils collected from a former metal recycling plant were examined. These three soils were found to be contaminated by As, Cu, Pb, Sb, Se and Zn as compared to the non-contaminated soil. The pH-dependent extraction behavior of various elements from the soils was measured in a wide pH range and categorized into three groups. Hydrochloric acid (HCl), H2SO4, H3PO4, HNO3, sodium citrate, sodium tartrate, disodium dihydrogen ethylenediaminetetraacetate and diethylenetriaminepentaacetic acid were evaluated as extractants for removing contaminants from the soils. Extraction behavior of the soil constituents was also studied. The efficiency of the extraction was evaluated by the Japanese content and leaching tests. The stabilization of Pb remaining in the soil after the extraction process was conducted by the addition of iron(III) and calcium chloride.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kuperman, R.G.

Soil macroinvertebrate communities were studied in ecologically analogous oak-hickory forests across a three-state atmospheric pollution gradient in Illinois, Indiana, and Ohio. The goal was to investigate changes in the community structure of soil fauna in study sites receiving different amounts of acidic deposition for several decades and the possible relationships between these changes and physico-chemical properties of soil. The study revealed significant differences in the numbers of soil animals among the three study sites. The sharply differentiated pattern of soil macroinvertebrate fauna seems closely linked to soil chemistry. Significant correlations of the abundance of soil macroinvertebrates with soil parameters suggestmore » that their populations could have been affected by acidic deposition in the region. Abundance of total soil macroinvertebrates decreased with the increased cumulative loading of acidic deposition. Among the groups most sensitive to deposition were: earthworms gastropods, dipteran larvae, termites, and predatory beetles. The results of the study support the hypothesis that chronic long-term acidic deposition could aversely affect the soil decomposer community which could cause lower organic matter turnover rates leading to an increase in soil organic matter content in high deposition sites.« less

Unravelling Linkages between Plant Community Composition and the Pathogen-Suppressive Potential of Soils

PubMed Central

Latz, Ellen; Eisenhauer, Nico; Rall, Björn Christian; Scheu, Stefan; Jousset, Alexandre

2016-01-01

Plant diseases cause dramatic yield losses worldwide. Current disease control practices can be deleterious for the environment and human health, calling for alternative and sustainable management regimes. Soils harbour microorganisms that can efficiently suppress pathogens. Uncovering mediators driving their functioning in the field still remains challenging, but represents an essential step in order to develop strategies for increased soil health. We set up plant communities of varying richness to experimentally test the potential of soils differing in plant community history to suppress the pathogen Rhizoctonia solani. The results indicate that plant communities shape soil-disease suppression via changes in abiotic soil properties and the abundance of bacterial groups including species of the genera Actinomyces, Bacillus and Pseudomonas. Further, the results suggest that pairwise interactions between specific plant species strongly affect soil suppressiveness. Using structural equation modelling, we provide a pathway orientated framework showing how the complex interactions between plants, soil and microorganisms jointly shape soil suppressiveness. Our results stress the importance of plant community composition as a determinant of soil functioning, such as the disease suppressive potential of soils. PMID:27021053

Changes in land use driven by urbanization impact nitrogen cycling and the microbial community composition in soils

NASA Astrophysics Data System (ADS)

Wang, Haitao; Marshall, Christopher W.; Cheng, Minying; Xu, Huijuan; Li, Hu; Yang, Xiaoru; Zheng, Tianling

2017-03-01

Transition of populations from rural to urban living causes landscape changes and alters the functionality of soil ecosystems. It is unclear how this urbanization disturbs the microbial ecology of soils and how the disruption influences nitrogen cycling. In this study, microbial communities in turfgrass-grown soils from urban and suburban areas around Xiamen City were compared to microbial communities in the soils from rural farmlands. The potential N2O emissions, potential denitrification activity, and abundances of denitrifiers were higher in the rural farmland soils compared with the turfgrass soils. Ammonia oxidizing archaea (AOA) were more abundant than ammonia oxidizing bacteria (AOB) in turfgrass soils. Within turfgrass soils, the potential nitrification activities and AOA abundances were higher in the urban than in the suburban soils. These results indicate a more pivotal role of AOA in nitrification, especially in urban soils. Microbial community composition was distinctly grouped along urbanization categories (urban, suburban, and rural) classified according to the population density, which can in part be attributed to the differences in soil properties. These observed changes could potentially have a broader impact on soil nutrient availability and greenhouse gas emissions.

Microbiological profile of selected mucks

NASA Astrophysics Data System (ADS)

Dąbek-Szreniawska, M.; Wyczółkowski, A. I.

2009-04-01

INTRODUCTION Matyka-Sarzynska and Sokolowska (2000) emphasize that peats and peat soils comprise large areas of Poland. The creation of soil begins when the formation of swamp has ended. Gawlik (2000) states that the degree of influence of the mucky process of organic soils on the differentiations of the conditions of growth and development of plants is mainly connected with the changes of moisture-retentive properties of mucks which constitute the material for these soils, and the loss of their wetting capacities. The above-mentioned changes, which usually occur gradually and show a clear connection with the extent of dehydration and, at times, with its duration, intensify significantly when the soils are under cultivation. The mucky process of peat soils leads to transformations of their physical, chemical and biological properties. The main ingredient of peat soils is organic substance. The substance is maintained inside them by the protective activity of water. The process of land improvement reduces the humidity of the environment, and that Intensifies the pace of the activity of soil microorganisms which cause the decay of organic substance. The decay takes place in the direction of two parallel processes: mineralization and humification. All groups of chemical substances constituting peat undergo mineralization. Special attention should be called to the mineralization of carbon and nitrogen compounds, which constitute a large percentage of theorganic substance of the peat organic mass. Okruszko (1976) has examined scientificbases of the classification of peat soils depending on the intensity of the muck process. The aim of this publication was to conduct a microbiological characteristic of selected mucky material. METHODS AND MATERIALS Soil samples used in the experiments were acquired from the Leczynsko-Wlodawski Lake Region, a large area of which constitutes a part of the Poleski National Park, which is covered to a large extent with high peat bogs. It was a mucky-peat soil with different degrees of muck process, described by Gawlik (2000) as MtI - first step of muck process, and MtII - second step of muck process. The numbers of selected groups of microorganisms were established using the cultivation method. The total number of microorganisms, zymogenic, aerobic and anaerobic microorganisms (Fred, Waksman 1928), oligotrophic microorganisms, the number of fungi (Parkinson 1982), ammonifiers (Parkinson et al 1971), nitrogen reducers and amolytic microorganisms (Pochon and Tardieux 1962), were determined. RESULTS The interpretation of the obtained results should take into consideration not only the characteristics of the studied objects, but also the characteristics of the methods used and of the examined microorganisms. As a result of the experiments that were carried out, significant differences of the numbers of the examined groups of microorganisms, depending on the degree of the muck process, have been observed. The number of the examined groups was significantly higher in the soil at the first step muck process than the second step of muck process. Amylolytic bacteria were an exception. Probably, during the muck process, ammonification, nitrification and nitrogen reduction process take place at the same time, which is indicated by the number of individual groups of examined microorganisms. CONCLUSIONS During the muck process, the number of microorganisms in the soil decreases. It can be presupposed that during the muck process, the basic process realized by microorganisms is the degradation of organic substance, using nitrates as oxidizers. Dąbek-Szreniawska M.: 1992 Results of microbiological analysis related to soil physical properties. Zesz. Probl. Post. Nauk Roln., 398, 1-6. Fred E.B., Waksman S.A.: 1928 Laboratory manual of general microbiology. Mc Graw-Hill Book Company, New York - London pp. 145. Gawlik J.: 2000 Division of differently silted peat formations into classes according to their state of secondary transformations. Acta Agrophysica, 26, 17-24. Maciak F.: 1985 MateriaŁ y do ćwiczeń z rekultywacji teren

Interactive effects of biochar ageing in soils related to feedstock, pyrolysis temperature, and historic charcoal production.

NASA Astrophysics Data System (ADS)

Heitkötter, Julian; Marschner, Bernd

2015-04-01

Biochar is suggested for soil amelioration and carbon sequestration, based on its assumed role as the key factor for the long-term fertility of Terra preta soils. Several studies have shown that certain biochar properties can undergo changes through ageing processes, especially regarding charge characteristics. However, only a few studies determined the changes of different biochars under the same incubation conditions and in different soils. The objective of this study was to characterize the changes of pine chip (PC)- and corn digestate (CD)-derived biochars pyrolyzed at 400 or 600 °C during 100 days of laboratory incubation in a historical kiln soil and an adjacent control soil. Separation between soil and biochar was ensured by using mesh bags. Especially, changes in charge characteristics depended on initial biochar properties affected by feedstock and pyrolysis temperature and on soil properties affected by historic charcoal production. While the cation exchange capacity (CEC) markedly increased for both CD biochars during incubation, PC biochars showed no or only slight increases in CEC. Corresponding to the changes in CEC, ageing of biochars also increased the amount of acid functional groups with increases being in average about 2-fold higher in CD biochars than in PC biochars. Further and in contrast to other studies, the surface areas of biochars increased during ageing, likely due to ash leaching and degradation of tar residues. Changes in CEC and surface acidity of CD biochars were more pronounced after incubation in the control soil, while surface area increase was higher in the kiln soil. Since the two acidic forest soils used in this this study did not greatly differ in physical or chemical properties, the main process for inducing these differences in the buried biochar most likely is related to the differences in dissolved organic carbon (DOC). Although the kiln soil contained about 50% more soil organic carbon due to the presence of charcoal particles, extractable DOC was lower and less aromatic than in the adjacent control soil, likely due to strong sorption of dissolved organic matter (DOM) onto charcoal particles. We suggest that higher sorption of DOM onto the surface of biochar in the control soil provided additional acid functional groups and thus increased the surface charge to a greater extent than in the DOC poorer kiln soil. Hence, biochars incubated in the kiln soil showed less changes in CEC and surface acidity. Higher availability of DOM in the control soil could also stimulate microbial activity to a larger extent, resulting in higher oxidation rates of biochars incubated in the control soil.

Measuring and understanding soil water repellency through novel interdisciplinary approaches

NASA Astrophysics Data System (ADS)

Balshaw, Helen; Douglas, Peter; Doerr, Stefan; Davies, Matthew

2017-04-01

Food security and production is one of the key global issues faced by society. It has become evermore essential to work the land efficiently, through better soil management and agronomy whilst protecting the environment from air and water pollution. The failure of soil to absorb water - soil water repellency - can lead to major environmental problems such as increased overland flow and soil erosion, poor uptake of agricultural chemicals and increased risk of groundwater pollution due to the rapid transfer of contaminants and nutrient leaching through uneven wetting and preferential flow pathways. Understanding the causes of soil hydrophobicity is essential for the development of effective methods for its amelioration, supporting environmental stability and food security. Organic compounds deposited on soil mineral or aggregate surfaces have long been recognised as a major factor in causing soil water repellency. It is widely accepted that the main groups of compounds responsible are long-chain acids, alkanes and other organic compounds with hydrophobic properties. However, when reapplied to sands and soils, the degree of water repellency induced by these compounds and mixtures varied widely with compound type, amount and mixture, in a seemingly unpredictable way. Our research to date involves two new approaches for studying soil wetting. 1) We challenge the theoretical basis of current ideas on the measured water/soil contact angle measurements. Much past and current discussion involves Wenzel and Cassie-Baxter models to explain anomalously high contact angles for organics on soils, however here we propose that these anomalously high measured contact angles are a consequence of the measurement of a water drop on an irregular non-planar surface rather than the thermodynamic factors of the Cassie-Baxter and Wenzel models. In our analysis we have successfully used a much simpler geometric approach for non-flat surfaces such as soil. 2) Fluorescent and phosphorescent probes are widely used in chemistry and biochemistry due to their sensitive response to their physical and chemical environment, such as polarity, and viscosity. However to date they have not been used to study soil water repellency. Here in collaboration with photochemistry groups in Swansea University and the University of Coimbra, we are examining the use of fluorescent probes to measure the polarity and viscosity of the soil/organic interface for both model and natural soils and how this changes in real time during wetting.

Shea (Vitellaria paradoxa Gaertn C. F.) fruit yield assessment and management by farm households in the Atacora district of Benin

PubMed Central

Villamor, Grace B.; Nyarko, Benjamin Kofi; Wala, Kperkouma; Akpagana, Koffi

2018-01-01

Vitellaria paradoxa (Gaertn C. F.), or shea tree, remains one of the most valuable trees for farmers in the Atacora district of northern Benin, where rural communities depend on shea products for both food and income. To optimize productivity and management of shea agroforestry systems, or "parklands," accurate and up-to-date data are needed. For this purpose, we monitored120 fruiting shea trees for two years under three land-use scenarios and different soil groups in Atacora, coupled with a farm household survey to elicit information on decision making and management practices. To examine the local pattern of shea tree productivity and relationships between morphological factors and yields, we used a randomized branch sampling method and applied a regression analysis to build a shea yield model based on dendrometric, soil and land-use variables. We also compared potential shea yields based on farm household socio-economic characteristics and management practices derived from the survey data. Soil and land-use variables were the most important determinants of shea fruit yield. In terms of land use, shea trees growing on farmland plots exhibited the highest yields (i.e., fruit quantity and mass) while trees growing on Lixisols performed better than those of the other soil group. Contrary to our expectations, dendrometric parameters had weak relationships with fruit yield regardless of land-use and soil group. There is an inter-annual variability in fruit yield in both soil groups and land-use type. In addition to observed inter-annual yield variability, there was a high degree of variability in production among individual shea trees. Furthermore, household socioeconomic characteristics such as road accessibility, landholding size, and gross annual income influence shea fruit yield. The use of fallow areas is an important land management practice in the study area that influences both conservation and shea yield. PMID:29346406

Shea (Vitellaria paradoxa Gaertn C. F.) fruit yield assessment and management by farm households in the Atacora district of Benin.

PubMed

Aleza, Koutchoukalo; Villamor, Grace B; Nyarko, Benjamin Kofi; Wala, Kperkouma; Akpagana, Koffi

2018-01-01

Vitellaria paradoxa (Gaertn C. F.), or shea tree, remains one of the most valuable trees for farmers in the Atacora district of northern Benin, where rural communities depend on shea products for both food and income. To optimize productivity and management of shea agroforestry systems, or "parklands," accurate and up-to-date data are needed. For this purpose, we monitored120 fruiting shea trees for two years under three land-use scenarios and different soil groups in Atacora, coupled with a farm household survey to elicit information on decision making and management practices. To examine the local pattern of shea tree productivity and relationships between morphological factors and yields, we used a randomized branch sampling method and applied a regression analysis to build a shea yield model based on dendrometric, soil and land-use variables. We also compared potential shea yields based on farm household socio-economic characteristics and management practices derived from the survey data. Soil and land-use variables were the most important determinants of shea fruit yield. In terms of land use, shea trees growing on farmland plots exhibited the highest yields (i.e., fruit quantity and mass) while trees growing on Lixisols performed better than those of the other soil group. Contrary to our expectations, dendrometric parameters had weak relationships with fruit yield regardless of land-use and soil group. There is an inter-annual variability in fruit yield in both soil groups and land-use type. In addition to observed inter-annual yield variability, there was a high degree of variability in production among individual shea trees. Furthermore, household socioeconomic characteristics such as road accessibility, landholding size, and gross annual income influence shea fruit yield. The use of fallow areas is an important land management practice in the study area that influences both conservation and shea yield.

A tiered approach for the human health risk assessment for consumption of vegetables from with cadmium-contaminated land in urban areas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Swartjes, Frank A., E-mail: frank.swartjes@rivm.nl; Versluijs, Kees W.; Otte, Piet F.

Consumption of vegetables that are grown in urban areas takes place worldwide. In developing countries, vegetables are traditionally grown in urban areas for cheap food supply. In developing and developed countries, urban gardening is gaining momentum. A problem that arises with urban gardening is the presence of contaminants in soil, which can be taken up by vegetables. In this study, a scientifically-based and practical procedure has been developed for assessing the human health risks from the consumption of vegetables from cadmium-contaminated land. Starting from a contaminated site, the procedure follows a tiered approach which is laid out as follows. Inmore » Tier 0, the plausibility of growing vegetables is investigated. In Tier 1 soil concentrations are compared with the human health-based Critical soil concentration. Tier 2 offers the possibility for a detailed site-specific human health risk assessment in which calculated exposure is compared to the toxicological reference dose. In Tier 3, vegetable concentrations are measured and tested following a standardized measurement protocol. To underpin the derivation of the Critical soil concentrations and to develop a tool for site-specific assessment the determination of the representative concentration in vegetables has been evaluated for a range of vegetables. The core of the procedure is based on Freundlich-type plant–soil relations, with the total soil concentration and the soil properties as variables. When a significant plant–soil relation is lacking for a specific vegetable a geometric mean of BioConcentrationFactors (BCF) is used, which is normalized according to soil properties. Subsequently, a ‘conservative’ vegetable-group-consumption-rate-weighted BioConcentrationFactor is calculated as basis for the Critical soil concentration (Tier 1). The tool to perform site-specific human health risk assessment (Tier 2) includes the calculation of a ‘realistic worst case’ site-specific vegetable-group-consumption-rate-weighted BioConcentrationFactor. -- Highlights: • A scientifically-based and practical procedure has been developed for assessing the human health risks from the consumption of vegetables. • Uptake characteristics of cadmium in a series of vegetables is represented by a vegetable-group-consumption-rate-weighted BioConcentrationFactor. • Calculations and measurement steps are combined.« less

How do earthworms, soil texture and plant composition affect infiltration along an experimental plant diversity gradient in grassland?

PubMed

Fischer, Christine; Roscher, Christiane; Jensen, Britta; Eisenhauer, Nico; Baade, Jussi; Attinger, Sabine; Scheu, Stefan; Weisser, Wolfgang W; Schumacher, Jens; Hildebrandt, Anke

2014-01-01

Infiltration is a key process in determining the water balance, but so far effects of earthworms, soil texture, plant species diversity and their interaction on infiltration capacity have not been studied. We measured infiltration capacity in subplots with ambient and reduced earthworm density nested in plots of different plant species (1, 4, and 16 species) and plant functional group richness and composition (1 to 4 groups; legumes, grasses, small herbs, tall herbs). In summer, earthworm presence significantly increased infiltration, whereas in fall effects of grasses and legumes on infiltration were due to plant-mediated changes in earthworm biomass. Effects of grasses and legumes on infiltration even reversed effects of texture. We propose two pathways: (i) direct, probably by modifying the pore spectrum and (ii) indirect, by enhancing or suppressing earthworm biomass, which in turn influenced infiltration capacity due to change in burrowing activity of earthworms. Overall, the results suggest that spatial and temporal variations in soil hydraulic properties can be explained by biotic processes, especially the presence of certain plant functional groups affecting earthworm biomass, while soil texture had no significant effect. Therefore biotic parameters should be taken into account in hydrological applications.

Molecular-based environmental risk assessment of three varieties of genetically engineered cows.

PubMed

Xu, Jianxiang; Zhao, Jie; Wang, Jianwu; Zhao, Yaofeng; Zhang, Lei; Chu, Mingxing; Li, Ning

2011-10-01

The development of animal biotechnology has led to an increase in attention to biosafety issues. Here we evaluated the impact of genetically engineered cows on the environment. The probability of horizontal gene transfer and the impact on the microbial communities in cow gut and soil were tested using three varieties of genetically engineered cows that were previously transformed with a human gene encoding lysozyme, lactoferrin, or human alpha lactalbumin. The results showed that the transgenes were not detectable by polymerase chain reaction (PCR) or quantitative real-time PCR in gut microbial DNA extracts of manure or microbial DNA extracts of topsoil. In addition, the transgenes had no impact on the microbial communities in cow gut or soil as assessed by PCR-denaturing gradient gel electrophoresis or 16S rDNA sequencing. Furthermore, phylogenetic analyses showed that the manure bacteria sampled during each of the four seasons belonged primarily to two groups, Firmicutes and Bacteroidetes, and the soil bacteria belonged to four groups, Firmicutes, Bacteroidetes, Actinobacteria, and α-proteobacteria. Other groups, such as β-proteobacteria, γ-proteobacteria, δ-proteobacteria, ε-proteobacteria, Spirochaetes, Acidobacteria, Chloroflexi, and Nitrospira, were not dominant in the manure or soil.

Reflecting on the structure of soil classification systems: insights from a proposal for integrating subsoil data into soil information systems

NASA Astrophysics Data System (ADS)

Dondeyne, Stefaan; Juilleret, Jérôme; Vancampenhout, Karen; Deckers, Jozef; Hissler, Christophe

2017-04-01

Classification of soils in both World Reference Base for soil resources (WRB) and Soil Taxonomy hinges on the identification of diagnostic horizons and characteristics. However as these features often occur within the first 100 cm, these classification systems convey little information on subsoil characteristics. An integrated knowledge of the soil, soil-to-substratum and deeper substratum continuum is required when dealing with environmental issues such as vegetation ecology, water quality or the Critical Zone in general. Therefore, we recently proposed a classification system of the subsolum complementing current soil classification systems. By reflecting on the structure of the subsoil classification system which is inspired by WRB, we aim at fostering a discussion on some potential future developments of WRB. For classifying the subsolum we define Regolite, Saprolite, Saprock and Bedrock as four Subsolum Reference Groups each corresponding to different weathering stages of the subsoil. Principal qualifiers can be used to categorize intergrades of these Subsoil Reference Groups while morphologic and lithologic characteristics can be presented with supplementary qualifiers. We argue that adopting a low hierarchical structure - akin to WRB and in contrast to a strong hierarchical structure as in Soil Taxonomy - offers the advantage of having an open classification system avoiding the need for a priori knowledge of all possible combinations which may be encountered in the field. Just as in WRB we also propose to use principal and supplementary qualifiers as a second level of classification. However, in contrast to WRB we propose to reserve the principal qualifiers for intergrades and to regroup the supplementary qualifiers into thematic categories (morphologic or lithologic). Structuring the qualifiers in this manner should facilitate the integration and handling of both soil and subsoil classification units into soil information systems and calls for paying attention to these structural issues in future developments of WRB.

Constitutive and Stability Behavior of Soils in Microgravity Environment

NASA Technical Reports Server (NTRS)

Alshibli, Khalid A.; Sture, Stein; Costes, Nicholas

2000-01-01

All aspects of soil stability, bearing capacity, slope stability, the supporting capacity of deep foundations, and penetration resistance depend on soil strength. The stress-deformation and stress-deformation-time behavior of soils are of importance in any problem where ground movements are of interest. In most engineering materials, the strength is derived from internal chemical and physico-chemical forces of interaction, which bond the atoms, molecules, and particles together. In soils, the constitutive relations are mainly derived from interparticle friction between particles and particle groups and dilatancy, and to a lesser extent from particle bonding by weak electrostatic, physico-chemical, and coulomb forces. For engineering purposes, soils are classified as cohesive (clays and silts; typical particle sizes range from 10 nm to 10 micrometers) and cohesionless (sand and gravel; typical particle sizes range from 10 micrometers to 75 mm). The mechanical or constitutive properties of cohesionless soils or granular materials are highly fabric-dependent, highly non-linear, and non-conservative with engineering properties primarily depending on the effects of gravity through self-weight and on the tractions or forces applied to the soil mass. Under moderate-to-high stress levels, the influence of gravity on the behavior of laboratory test specimens may not be pronounced and, therefore, the test results in terrestrial (1-g) environment may be sufficiently conclusive. However at low interparticle stresses, which can result either from low applied (confining) stresses or from excess pore fluid pressures developed within the soil mass without corresponding changes in the applied stresses, the presence of gravitational body forces acting on solid particles and interstitial fluids exerts a pronounced influence on movement of individual particles or particle groups. Such motions, in turn, cause changes in soil fabric which results in significant changes in the interparticle friction forces contributing to the soil's strength and deformation characteristics.

Geochemical Fate and Transport of Sildenafil and Vardenafil

NASA Astrophysics Data System (ADS)

Richter, L.; Boudinot, G.; Vulava, V. M.; Cory, W. C.

2015-12-01

The geochemical fate of pharmaceuticals and their degradation products is a developing environmental field. The geologic, chemical, and biological fate of these pollutants has become very relevant with the increase in human population and the resulting increase in pollutant concentrations in the environment. In this study, we focus on sildenafil (SDF) and vardenafil (VDF), active compounds in Viagra and Levitra, respectively, two commonly used erectile dysfunction drugs. The main objective is to determine the sorption potential and transport behavior of these two compounds in natural soils. Both SDF and VDF are complex organic molecules with multiple amine functional groups in their structures. Two types of natural acidic soils (pH≈4.5), an organic-rich soil (7.6% OM) and clay-rich soil (5.1% clay) were used in this study to determine which soil components influence sorption behavior of both compounds. Sorption isotherms measured using batch reactors were nearly linear, but sorption was stronger in soil that contained higher clay content. Both compounds have multiple pKas due to the amine functional groups, the relevant pKas of SDF are 5.97 and 7.27, and those of VDF's are 4.72 and 6.21. These values indicate that these compounds likely behave as cations in soil suspensions and hence were strongly sorbed to negatively-charged clay minerals present in both soils. The clay composition in both soils is predominantly kaolinite with smaller amount of montmorillonite, both of which have a predominantly negative surface charge. Transport experiments using glass chromatography columns indicated that both compounds were more strongly retarded in the clay-rich soils. Breakthrough curves from the transport experiments were modeled using convection-dispersion transport equations. The organic matter in the soil seemed to play a less dominant role in the geochemistry in this study, but is likely to transform both compounds into derivative compounds as seen in other studies.

Kinetic characteristic of phenanthrene sorption in aged soil amended with biochar

NASA Astrophysics Data System (ADS)

Kim, Chanyang; Kim, Yong-Seong; Hyun, Seunghun

2015-04-01

Biochar has been recently highlighted as an amendment that affects yield of the crops by increasing pH, cation exchange capacity and water retention, and reduces the lability of contaminants by increasing sorption capacity in the soil system. Biochar's physico-chemical properties, high CEC, surfaces containing abundant micropores and macropores, and various types of functional groups, play important roles in enhancing sorption capacity of contaminants. Aging through a natural weathering process might change physico-chemical properties of biochar amended in soils, which can affect the sorption behavior of contaminants. Thus, in this study, the sorption characteristics of phenanthrene (PHE) on biochar-amended soils were studied with various types of chars depending on aging time. To do this, 1) soil was amended with sludge waste char (SWC), wood char (WC), and municipal waste char (MWC) during 0, 6, and 12 month. Chars were applied to soil at 1% and 2.5% (w/w) ratio. 2) Several batch kinetic and equilibrium studies were conducted. One-compartment first order and two-compartment first order model apportioning the fraction of fast and slow sorbing were selected for kinetic models. Where, qt is PHE concentration in biochar-amended soils at each time t, qeis PHE concentration in biochar-amended soils at equilibrium. ff is fastly sorbing fraction and (1-ff) is slowly sorbing fraction. k is sorption rate constant from one-compartment first order model, k1 and k2 are sorption rate constant from two-compartment first order model, t is time (hr). The equilibrium sorption data were fitted with Fruendlich and Langmuir equation. 3) Change in physico-chemical properties of biochar-amended soils was investigated with aging time. Batch equilibrium sorption results suggested that sorbed amount of PHE on WC was greater than SWC and MWC. The more char contents added to soil, the greater sorption capacity of PHE. Sorption equilibrium was reached after 4 hours and equilibrium pH ranged from 6.5 to 8.0. Sorption capacity was reduced with aging time. From kinetic results, two-compartment first order model was more suitable than one-compartment first order model. Fast sorption site of biochar-amended soils dominated total sorption process (i.e., Fraction of fast sorption site ranged from 0.55 to 0.96). Reduced sorption capacity with aging time could be attributed to changes in physico-chemical properties of biochar-amended soils (e.g., reduced pores and increased hydrophilic carboxyl and carbonyl functional groups). Verification is FI-IR and SSA. It is assumed that biochar is a suitable material for PHE contaminated soil in order to reduce the lability of PHE. However, aging effects would lessen biochar benefit for reducing the sorption capacity of PHE by forming hydrophilic functional group and reducing pores.

Isolation and molecular identification of keratinophilic fungi from public parks soil in Shiraz, Iran.

PubMed

Pakshir, Keyvan; Ghiasi, Moosa Rahimi; Zomorodian, Kamiar; Gharavi, Ali Reza

2013-01-01

Keratinophilic fungi are an important group of fungi that live in soil. The aim of this study was to isolate and identify keratinophilic fungi from the soil of different parks in Shiraz. A total of 196 soil samples from 43 parks were collected. Isolation of the fungi was performed by hair bait technique. The isolated colonies were identified by morphologic feature of macro- and microconidia and molecular method, using DNA sequence analysis. ITS region of ribosomal DNA was amplified and the PCR products were sequenced. Results. 411 isolates from 22 genera were identified. Fusarium (23.8%), Chrysosporium (13.13%), Acremonium (12.65%), Penicillium (12.39%), Microsporum gypseum (1.94%), Bionectria ochroleuca (1.21%), Bipolaris spicifera (1.21%), Scedosporium apiospermum (0.82%), Phialophora reptans (0.82%), Cephalosporium curtipes (0.49%), Scedosporium dehoogii (0.24%), Ochroconis constricta (0.24%), Nectria mauritiicola (0.49%), Chaetomium (0.49%), Scopulariopsis (0.24%), Malbranchea (0.24%), and Tritirachium (0.24%) were the most important isolates. Most of the fungi were isolated from the soils with the PH range of 7 to 8. Our study results showed that many keratinophilic fungi isolated from the parks soil are important for public health and children are an important group at a high risk of being exposed to these fungi.

Evaluation of Resilient Modulus of Subgrade and Base Materials in Indiana and Its Implementation in MEPDG

PubMed Central

Siddiki, Nayyarzia; Nantung, Tommy; Kim, Daehyeon

2014-01-01

In order to implement MEPDG hierarchical inputs for unbound and subgrade soil, a database containing subgrade M R, index properties, standard proctor, and laboratory M R for 140 undisturbed roadbed soil samples from six different districts in Indiana was created. The M R data were categorized in accordance with the AASHTO soil classifications and divided into several groups. Based on each group, this study develops statistical analysis and evaluation datasets to validate these models. Stress-based regression models were evaluated using a statistical tool (analysis of variance (ANOVA)) and Z-test, and pertinent material constants (k 1, k 2 and k 3) were determined for different soil types. The reasonably good correlations of material constants along with M R with routine soil properties were established. Furthermore, FWD tests were conducted on several Indiana highways in different seasons, and laboratory resilient modulus tests were performed on the subgrade soils that were collected from the falling weight deflectometer (FWD) test sites. A comparison was made of the resilient moduli obtained from the laboratory resilient modulus tests with those from the FWD tests. Correlations between the laboratory resilient modulus and the FWD modulus were developed and are discussed in this paper. PMID:24701162

Soil moisture and excavation behaviour in the Chaco leaf-cutting ant (Atta vollenweideri): digging performance and prevention of water inflow into the nest.

PubMed

Pielström, Steffen; Roces, Flavio

2014-01-01

The Chaco leaf-cutting ant Atta vollenweideri is native to the clay-heavy soils of the Gran Chaco region in South America. Because of seasonal floods, colonies are regularly exposed to varying moisture across the soil profile, a factor that not only strongly influences workers' digging performance during nest building, but also determines the suitability of the soil for the rearing of the colony's symbiotic fungus. In this study, we investigated the effects of varying soil moisture on behaviours associated with underground nest building in A. vollenweideri. This was done in a series of laboratory experiments using standardised, plastic clay-water mixtures with gravimetric water contents ranging from relatively brittle material to mixtures close to the liquid limit. Our experiments showed that preference and group-level digging rate increased with increasing water content, but then dropped considerably for extremely moist materials. The production of vibrational recruitment signals during digging showed, on the contrary, a slightly negative linear correlation with soil moisture. Workers formed and carried clay pellets at higher rates in moist clay, even at the highest water content tested. Hence, their weak preference and low group-level excavation rate observed for that mixture cannot be explained by any inability to work with the material. More likely, extremely high moistures may indicate locations unsuitable for nest building. To test this hypothesis, we simulated a situation in which workers excavated an upward tunnel below accumulated surface water. The ants stopped digging about 12 mm below the interface soil/water, a behaviour representing a possible adaptation to the threat of water inflow field colonies are exposed to while digging under seasonally flooded soils. Possible roles of soil water in the temporal and spatial pattern of nest growth are discussed.

Level of Fluoride in Soil, Grain and Water in Jalgaon District, Maharashtra, India.

PubMed

Naik, Rahul Gaybarao; Dodamani, Arun Suresh; Vishwakarma, Prashanth; Jadhav, Harish Chaitram; Khairnar, Mahesh Ravindra; Deshmukh, Manjiri Abhay; Wadgave, Umesh

2017-02-01

Fluoride has an influence on both oral as well as systemic health. The major source of fluoride to body is through drinking water as well as through diet. Staple diet mainly depends on local environmental factors, food grains grown locally, its availability etc. Determination of fluoride level in these food grains is important. So, estimation of the amount of fluoride in grains and its relation to the sources of fluoride used for their cultivation viz., soil and water is important. To estimate the relation of fluoride concentration in grains (Jowar) with respect to that of soil and water used for their cultivation. Fifteen samples each of soil, water and grains were collected using standardized method from the same farm fields of randomly selected villages of Jalgaon district. Fluoride ion concentration was determined in laboratory using SPADNS technique. Mean difference in fluoride levels in between the groups were analyzed using ANOVA and Post-Hoc Tukey test. Linear regression method was applied to analyse the association of the fluoride content of grain with water and soil. There was a significant difference in between mean fluoride levels of soil and water (p<0.001) and in between soil and grain (p<0.001); however, difference in between mean fluoride levels of water and grain was found to be non significant (p=0.591). Also fluoride levels in all the three groups showed significant association with each other. Fluoride level of soil, grains and water should be adjusted to an optimum level. Soil has positive correlation with respect to uptake of fluoride by Jowar grains. So, Jowar grains with optimum fluoride content should be made available in the commercial markets so that oral and general health can be benefitted.

[Characteristics of soil macrofaunal community structure in secondary forest and forest plantations in western Qinling Mountains of Northwest China].

PubMed

Liu, Ji-Liang; Cao, Jing; Li, Shi-Jie; Pan, Chun-Lin; Pan, Cheng-Chen

2012-09-01

Long-term disturbance of human beings on secondary forest ecosystem would have profound impacts on belowground ecological processes, whereas the community structure and functional diversity of soil fauna would be sensitive to the changes of belowground ecological processes, with significance as an indicator of the changes. In this study, the method of hand-sorting was adopted to investigate the density of soil macrofaunal community in a secondary forest and the Pinus tabulaeformis, Larix kaempferi, Picea abie, and Picea asperata plantations of nearly 30 years old in Xiaolongshan forest area of western Qinling Mountains, and the PCA ordination and one-way ANOVA analysis were applied to analyze the community structure and trophic group composition of soil macrofauna in the five forest types. In the P. tabulaeformis and L. kaempferi plantations, the density of soil macrofaunal community was 3.0 and 2.1 times of that in the secondary forest, respectively, and the consumers/decomposers ratio of the community was obviously higher than that in the secondary forest. Among the plantations, P. tabulaeformis and L. kaempferi plantations had a significantly higher consumers/decomposers ratio of soil macrofaunal community than P. abies and P. asperata plantations. There was an obvious difference in community structure of soil macrofauna among the four plantations. The density of soil macrofaunal community in P. tabulaeformis and L. kaempferi plantations was 3.5 and 2.1 times higher than that in P. asperata plantation, respectively, whereas the group richness of soil macrofaunal community in P. tabulaeformis plantation was 1.5 times of that in P. abies and P. asperata plantations.

Density and community structure of soil- and bark-dwelling microarthropods along an altitudinal gradient in a tropical montane rainforest.

PubMed

Illig, Jens; Norton, Roy A; Scheu, Stefan; Maraun, Mark

2010-09-01

Microarthropod communities in the soil and on the bark of trees were investigated along an elevation gradient (1,850, 2,000, 2,150, 2,300 m) in a tropical montane rain forest in southern Ecuador. We hypothesised that the density of microarthropods declines with depth in soil and increases with increasing altitude mainly due to the availability of resources, i.e. organic matter. In addition, we expected bark and soil communities to differ strongly, since the bark of trees is more exposed to harsher factors. In contrast to our hypothesis, the density of major microarthropod groups (Collembola, Oribatida, Gamasina, Uropodina) was generally low and decreased with altitude. However, as we predicted the density of each of the groups decreased with soil depth. Density of microarthropods on tree bark was lower than in soil. Overall, 43 species of oribatid mites were found, with the most abundant higher taxa being Poronota, pycnonotic Apheredermata, Mixonomata and Eupheredermata. The oribatid mite community on bark did not differ significantly from that in soil. The number of oribatid mite species declined with altitude (24, 23, 17 and 13 species at 1,850, 2,000, 2,150 and 2,300 m, respectively). Rarefaction curves indicate that overall about 50 oribatid mite species are to be expected along the studied altitudinal gradient. Results of this study indicate (1) that microarthropods may be limited by the quality of resources at high altitudes and by the amount of resources at deeper soil layers, and (2) that the bark of trees and the soil are habitats of similar quality for oribatid mites.

Microbial Profiling of a Suppressiveness-Induced Agricultural Soil Amended with Composted Almond Shells

PubMed Central

Vida, Carmen; Bonilla, Nuria; de Vicente, Antonio; Cazorla, Francisco M.

2016-01-01

This study focused on the microbial profile present in an agricultural soil that becomes suppressive after the application of composted almond shells (AS) as organic amendments. For this purpose, we analyzed the functions and composition of the complex communities present in an experimental orchard of 40-year-old avocado trees, many of them historically amended with composted almond shells. The role of microbes in the suppression of Rosellinia necatrix, the causative agent of avocado white root rot, was determined after heat-treatment and complementation experiments with different types of soil. Bacterial and fungal profiles obtained from natural soil samples based on the 16S rRNA gene and ITS sequencing revealed slight differences among the amended (AS) and unamended (CT) soils. When the soil was under the influence of composted almond shells as organic amendments, an increase in Proteobacteria and Ascomycota groups was observed, as well as a reduction in Acidobacteria and Mortierellales. Complementary to these findings, functional analysis by GeoChip 4.6 confirmed these subtle differences, mainly present in the relative abundance of genes involved in the carbon cycle. Interestingly, a group of specific probes included in the “soil benefit” category was present only in AS-amended soils, corresponding to specific microorganisms previously described as potential biocontrol agents, such as Pseudomonas spp., Burkholderia spp., or Actinobacteria. Considering the results of both analyses, we determined that AS-amendments to the soil led to an increase in some orders of Gammaproteobacteria, Betaproteobacteria, and Dothideomycetes, as well as a reduction in the abundance of Xylariales fungi (where R. necatrix is allocated). The combination of microbial action and substrate properties of suppressiveness are discussed. PMID:26834725

Response of bacterial pdo1, nah, and C12O genes to aged soil PAH pollution in a coke factory area.

PubMed

Han, Xue-Mei; Liu, Yu-Rong; Zheng, Yuan-Ming; Zhang, Xiao-Xia; He, Ji-Zheng

2014-01-01

Soil pollution caused by polycyclic aromatic hydrocarbons (PAHs) is threatening human health and environmental safety. Investigating the relative prevalence of different PAH-degrading genes in PAH-polluted soils and searching for potential bioindicators reflecting the impact of PAH pollution on microbial communities are useful for microbial monitoring, risk evaluation, and potential bioremediation of soils polluted by PAHs. In this study, three functional genes, pdo1, nah, and C12O, which might be involved in the degradation of PAHs from a coke factory, were investigated by real-time quantitative PCR (qPCR) and clone library approaches. The results showed that the pdo1 and C12O genes were more abundant than the nah gene in the soils. There was a significantly positive relationship between the nah or pdo1 gene abundances and PAH content, while there was no correlation between C12O gene abundance and PAH content. Analyses of clone libraries showed that all the pdo1 sequences were grouped into Mycobacterium, while all the nah sequences were classified into three groups: Pseudomonas, Comamonas, and Polaromonas. These results indicated that the abundances of nah and pdo1 genes were positively influenced by levels of PAHs in soil and could be potential microbial indicators reflecting the impact of soil PAH pollution and that Mycobacteria were one of the most prevalent PAHs degraders in these PAH-polluted soils. Principal component analysis (PCA) and correlation analyses between microbial parameters and environmental factors revealed that total carbon (TC), total nitrogen (TN), and dissolved organic carbon (DOC) had positive effects on the abundances of all PAH-degrading genes. It suggests that increasing TC, TN, and DOC inputs could be a useful way to remediate PAH-polluted soils.

Diversity of the soil biota in burned areas of southern taiga forests (Tver oblast)

NASA Astrophysics Data System (ADS)

Gongalsky, K. B.; Zaitsev, A. S.; Korobushkin, D. I.; Saifutdinov, R. A.; Yazrikova, T. E.; Benediktova, A. I.; Gorbunova, A. Yu.; Gorshkova, I. A.; Butenko, K. O.; Kosina, N. V.; Lapygina, E. V.; Kuznetsova, D. M.; Rakhleeva, A. A.; Shakhab, S. V.

2016-03-01

Relations between soil biota diversity and its contribution to the performance of some ecosystem functions were assessed based on the results obtained in undisturbed and burned spruce forests near the Central Forest Nature Biosphere Reserve (Tver oblast). In August 2014, in two 4-year-old burned areas, abiotic parameters of the soils, indicators of the state of the microbial communities, the number, taxonomic diversity, and the abundance of the main groups of soil invertebrates (testate amoebae, nematodes, enchytraeids, mites, collembolans, and the mesofauna as a whole) were determined. In the soils of the burned areas, higher CO2, CH4, and N2O emissions were observed. The number of bacterial cells remained similar, and the total length of active mycelium was not significantly different. All this implies a certain intensification of biogenic processes promoting the mobilization of carbon and nitrogen after fire. The number of most of the groups of soil animals was lower (not always significantly) in the burned area than that in the soils of the undisturbed forests. The changes in the taxonomic diversity were specific for each taxon studied. Overall, the diversity of invertebrates was related to the litter thickness. However, the high taxonomic diversity of soil fauna did not always correspond to the active functioning of the ecosystem. Thus, for some taxa, a quite close correlation was found, for instance, between the total number of species (of testate amoebae in particular) and the berry crop, as well as between the soil mesofauna population and the dead wood stock. The total diversity of the investigated taxa included in the detrital trophic web was the most reliable indicator of the carbon stock in the burned areas.

Diel-scale temporal dynamics recorded for bacterial groups in Namib Desert soil

PubMed Central

Gunnigle, Eoin; Frossard, Aline; Ramond, Jean-Baptiste; Guerrero, Leandro; Seely, Mary; Cowan, Don A.

2017-01-01

Microbes in hot desert soil partake in core ecosystem processes e.g., biogeochemical cycling of carbon. Nevertheless, there is still a fundamental lack of insights regarding short-term (i.e., over a 24-hour [diel] cycle) microbial responses to highly fluctuating microenvironmental parameters like temperature and humidity. To address this, we employed T-RFLP fingerprinting and 454 pyrosequencing of 16S rRNA-derived cDNA to characterize potentially active bacteria in Namib Desert soil over multiple diel cycles. Strikingly, we found that significant shifts in active bacterial groups could occur over a single 24-hour period. For instance, members of the predominant Actinobacteria phyla exhibited a significant reduction in relative activity from morning to night, whereas many Proteobacterial groups displayed an opposite trend. Contrary to our leading hypothesis, environmental parameters could only account for 10.5% of the recorded total variation. Potential biotic associations shown through co-occurrence networks indicated that non-random inter- and intra-phyla associations were ‘time-of-day-dependent’ which may constitute a key feature of this system. Notably, many cyanobacterial groups were positioned outside and/or between highly interconnected bacterial associations (modules); possibly acting as inter-module ‘hubs’ orchestrating interactions between important functional consortia. Overall, these results provide empirical evidence that bacterial communities in hot desert soils exhibit complex and diel-dependent inter-community associations. PMID:28071697

Diel-scale temporal dynamics recorded for bacterial groups in Namib Desert soil

NASA Astrophysics Data System (ADS)

Gunnigle, Eoin; Frossard, Aline; Ramond, Jean-Baptiste; Guerrero, Leandro; Seely, Mary; Cowan, Don A.

2017-01-01

Microbes in hot desert soil partake in core ecosystem processes e.g., biogeochemical cycling of carbon. Nevertheless, there is still a fundamental lack of insights regarding short-term (i.e., over a 24-hour [diel] cycle) microbial responses to highly fluctuating microenvironmental parameters like temperature and humidity. To address this, we employed T-RFLP fingerprinting and 454 pyrosequencing of 16S rRNA-derived cDNA to characterize potentially active bacteria in Namib Desert soil over multiple diel cycles. Strikingly, we found that significant shifts in active bacterial groups could occur over a single 24-hour period. For instance, members of the predominant Actinobacteria phyla exhibited a significant reduction in relative activity from morning to night, whereas many Proteobacterial groups displayed an opposite trend. Contrary to our leading hypothesis, environmental parameters could only account for 10.5% of the recorded total variation. Potential biotic associations shown through co-occurrence networks indicated that non-random inter- and intra-phyla associations were ‘time-of-day-dependent’ which may constitute a key feature of this system. Notably, many cyanobacterial groups were positioned outside and/or between highly interconnected bacterial associations (modules); possibly acting as inter-module ‘hubs’ orchestrating interactions between important functional consortia. Overall, these results provide empirical evidence that bacterial communities in hot desert soils exhibit complex and diel-dependent inter-community associations.

Co-effects of pyrene and nitrate on the activity and abundance of soil denitrifiers under anaerobic condition.

PubMed

Zhou, Zhi-Feng; Yao, Yan-Hong; Wang, Ming-Xia; Zuo, Xiao-Hu

2017-10-01

It has previously been confirmed that polycyclic aromatic hydrocarbons (PAHs) could be degraded by soil microbes coupling with denitrification, but the relationships among soil denitrifiers, PAHs, and nitrate under obligate anaerobic condition are still unclear. Here, co-effects of pyrene and nitrate on the activity and abundance of soil denitrifiers were investigated through a 45-day incubation experiment. Two groups of soil treatments with (N 30 ) and without (N 0 ) nitrate (30 mg kg -1 dry soil) amendment were conducted, and each group contained three treatments with different pyrene concentrations (0, 30, and 60 mg kg -1 dry soil denoted as P 0 , P 30 , and P 60 , respectively). The pyrene content, abundances of denitrification concerning genes (narG, periplasmic nitrate reductase gene; nirS, cd 1 -nitrite reductase gene; nirK, copper-containing nitrite reductase gene), and productions of N 2 O and CO 2 were measured at day 3, 14, 28, and 45, and the bacterial community structures in four represented treatments (N 0 P 0 , N 0 P 60 , N 30 P 0 , and N 30 P 60 ) were analyzed at day 45. The results indicated that the treatments with higher pyrene concentration had higher final pyrene removal rates than the treatments with lower pyrene concentration. Additionally, intensive emission of N 2 O was detected in all treatments only at day 3, but a continuous production of CO 2 was measured in each treatment during the incubation. Nitrate amendment could enhance the activity of soil denitrifiers, and be helpful for soil microbes to sustain their activity. While pyrene seemed had no influence on the productions of N 2 O and CO 2 , and amendment with pyrene or nitrate both had no obvious effect on abundances of denitrification concerning genes. Furthermore, it was nitrate but not pyrene had an obvious influence on the community structure of soil bacteria. These results revealed that, under anaerobic condition, the activity and abundance of soil denitrifiers both were insensitive to pyrene, but nitrate could improve the activity of soil denitrfiers and induce the shifts in soil bacterial community structure.

Divergent composition but similar function of soil food webs of individual plants: plant species and community effects.

PubMed

Bezemer, T M; Fountain, M T; Barea, J M; Christensen, S; Dekker, S C; Duyts, H; van Hal, R; Harvey, J A; Hedlund, K; Maraun, M; Mikola, J; Mladenov, A G; Robin, C; de Ruiter, P C; Scheu, S; Setälä, H; Smilauer, P; van der Putten, W H

2010-10-01

Soils are extremely rich in biodiversity, and soil organisms play pivotal roles in supporting terrestrial life, but the role that individual plants and plant communities play in influencing the diversity and functioning of soil food webs remains highly debated. Plants, as primary producers and providers of resources to the soil food web, are of vital importance for the composition, structure, and functioning of soil communities. However, whether natural soil food webs that are completely open to immigration and emigration differ underneath individual plants remains unknown. In a biodiversity restoration experiment we first compared the soil nematode communities of 228 individual plants belonging to eight herbaceous species. We included grass, leguminous, and non-leguminous species. Each individual plant grew intermingled with other species, but all plant species had a different nematode community. Moreover, nematode communities were more similar when plant individuals were growing in the same as compared to different plant communities, and these effects were most apparent for the groups of bacterivorous, carnivorous, and omnivorous nematodes. Subsequently, we analyzed the composition, structure, and functioning of the complete soil food webs of 58 individual plants, belonging to two of the plant species, Lotus corniculatus (Fabaceae) and Plantago lanceolata (Plantaginaceae). We isolated and identified more than 150 taxa/groups of soil organisms. The soil community composition and structure of the entire food webs were influenced both by the species identity of the plant individual and the surrounding plant community. Unexpectedly, plant identity had the strongest effects on decomposing soil organisms, widely believed to be generalist feeders. In contrast, quantitative food web modeling showed that the composition of the plant community influenced nitrogen mineralization under individual plants, but that plant species identity did not affect nitrogen or carbon mineralization or food web stability. Hence, the composition and structure of entire soil food webs vary at the scale of individual plants and are strongly influenced by the species identity of the plant. However, the ecosystem functions these food webs provide are determined by the identity of the entire plant community.

Desert Farming Benefits from Microbial Potential in Arid Soils and Promotes Diversity and Plant Health

PubMed Central

Köberl, Martina; Müller, Henry; Ramadan, Elshahat M.; Berg, Gabriele

2011-01-01

Background To convert deserts into arable, green landscapes is a global vision, and desert farming is a strong growing area of agriculture world-wide. However, its effect on diversity of soil microbial communities, which are responsible for important ecosystem services like plant health, is still not known. Methodology/Principal Findings We studied the impact of long-term agriculture on desert soil in one of the most prominent examples for organic desert farming in Sekem (Egypt). Using a polyphasic methodological approach to analyse microbial communities in soil as well as associated with cultivated plants, drastic effects caused by 30 years of agriculture were detected. Analysing bacterial fingerprints, we found statistically significant differences between agricultural and native desert soil of about 60%. A pyrosequencing-based analysis of the 16S rRNA gene regions showed higher diversity in agricultural than in desert soil (Shannon diversity indices: 11.21/7.90), and displayed structural differences. The proportion of Firmicutes in field soil was significantly higher (37%) than in the desert (11%). Bacillus and Paenibacillus play the key role: they represented 96% of the antagonists towards phytopathogens, and identical 16S rRNA sequences in the amplicon library and for isolates were detected. The proportion of antagonistic strains was doubled in field in comparison to desert soil (21.6%/12.4%); disease-suppressive bacteria were especially enriched in plant roots. On the opposite, several extremophilic bacterial groups, e.g., Acidimicrobium, Rubellimicrobium and Deinococcus-Thermus, disappeared from soil after agricultural use. The N-fixing Herbaspirillum group only occurred in desert soil. Soil bacterial communities were strongly driven by the a-biotic factors water supply and pH. Conclusions/Significance After long-term farming, a drastic shift in the bacterial communities in desert soil was observed. Bacterial communities in agricultural soil showed a higher diversity and a better ecosystem function for plant health but a loss of extremophilic bacteria. Interestingly, we detected that indigenous desert microorganisms promoted plant health in desert agro-ecosystems. PMID:21912695

Where Is Needle- and Root-Derived Soil Organic Matter After 10 Years of Decomposition in a Temperate Forest?

NASA Astrophysics Data System (ADS)

Hicks Pries, C.; Hatton, P.; Castanha, C.; Bird, J. A.; Torn, M. S.

2013-12-01

All soil organic matter (SOM) is ultimately derived from plant litter. The fate of plant litter in ecosystems determines soil carbon (C) storage and nutrient availability with far-reaching implications for ecosystems and global change. However, little is known about the process by which litter becomes SOM (as opposed to the well-studied controls on rates of C and nitrogen (N) loss from litter). We are investigating whether litter type affects where in soils litter-derived C and N eventually reside. Specifically, we are investigating whether litter type affects which minerals the C and N are associated with and how much C is in the microbial pool after a decade. We incubated 15N and 13C-labeled Pinus ponderosa needle and fine root litter in the Blodgett Experimental Forest in the Sierra Nevada foothills for 10 years. A two-way factorial design was used with needle and root litter placed into O and A soil horizons. In 2001, litter was inserted into the given horizon within soil mesocosms (10.2 cm diameter x 24 cm long PVC) that had two 5 x 5 cm mesh windows to allow contact with the surrounding soil. After 0.5, 1, 1.5, 4.5, and 10 years, the soil mesocosms were collected from the field. Isotopes were used to measure the percent recovery of the litter C and N in the bulk soil of the O and A horizons. To investigate mineral associations of the added litter C and N after 10 years, we sequentially fractionated the soils by density. The fractions were a free light fraction (<1.75 g cm-3), a fraction dominated by phyllosilicate secondary minerals (1.75-2.5 g cm-3), a quartz and feldspar-dominated fraction (2.5-2.78 g cm-3), and a fraction dominated by biotite with kaolinite and iron oxide coatings (>2.78 g cm-3). To quantify the amount of litter-derived C actively cycling in the microbial pool after 10 years and use of the C by different microbial groups, we measured the 13C in phospholipid fatty acids (PLFAs). After 10 years, more root litter C (about 40%) was retained in the soil than needle litter C (about 25%). Less than 0.15% of the remaining litter C (0.06% of originally applied) was found actively cycling in microbial PLFA's. Needle and root C did not differ in the amount remaining still in the active microbial pool. Preliminary data indicate that unlike after one year, there were no microbial groups with strong preferences for the added root or needle C relative to other microbial groups. The amount of root and needle C and N associated with the different mineral groups will also be presented.

Impact of temperature on the biological properties of soil

NASA Astrophysics Data System (ADS)

Borowik, Agata; Wyszkowska, Jadwiga

2016-01-01

The aim of the study was to determine the response of soil microorganisms and enzymes to the temperature of soil. The effect of the temperatures: 5, 10, 15, 20, and 25°C on the biological properties of soil was investigated under laboratory conditions. The study was performed using four different soils differing in their granulometric composition. It was found that 15°C was the optimal temperature for the development of microorganisms in soil. Typically, in the soil, the highest activity of dehydrogenases was observed at 10-15°C, catalase and acid phosphatase - at 15°C, alkaline phosphatase at 20°C, urease and β-glucosidase at 25°C. The highest colony development index for heterotrophic bacteria was recorded in soils incubated at 25°C, while for actinomycetes and fungi at 15°C. The incubation temperature of soil only slightly changed the ecophysiological variety of the investigated groups of microorganisms. Therefore, the observed climate changes might have a limited impact on the soil microbiological activity, because of the high ability of microorganisms to adopt. The response of soil microorganisms and enzymes was more dependent on the soil granulometric composition, organic carbon, and total nitrogen than on its temperature.

Environmental arsenic exposure of schoolchildren in a former tin mining and smelting community of southern Thailand.

PubMed

Vitayavirasak, Banjong; Rakwong, Kittiya; Chatchawej, Warangkana

2005-01-01

Risk behavior and environmental sources of exposure to arsenic for 10-year-old schoolchildren were studied in a high exposure area and a low exposure area of Ron Phibun Subdistrict, Ron Phibun District, Nakhon Si Thammarat Province and compared to those in a control area. Arsenic concentrations of surface soil, ambient air and drinking water to which subjects in the high exposure group, the low exposure group and the control group were exposed, were significantly different (p < 0.05). Similarly, urinary concentrations of total arsenic and the sum of inorganic arsenic and its metabolites were significantly higher in the study groups than the control group. The arsenic content of locally grown agricultural produce was small with the exception of freshwater snails (Sinotaia ingallsiana). Drinking water and surface soil were found to be the main sources of exposure. The exposure was mediated by the subjects' risk behavior, such as playing with soil and no hand-washing before eating. The estimated cancer risk from arsenic for the schoolchildren in the study area was between 10(-5)-10(-6) which meant that their risk of developing cancer was probable. Measures to reduce the cancer risk are recommended.

Plants regulate the effects of experimental warming on the soil microbial community in an alpine scrub ecosystem.

PubMed

Ma, Zhiliang; Zhao, Wenqiang; Zhao, Chunzhang; Wang, Dong; Liu, Mei; Li, Dandan; Liu, Qing

2018-01-01

Information on how soil microbial communities respond to warming is still scarce for alpine scrub ecosystems. We conducted a field experiment with two plant treatments (plant removal or undisturbed) subjected to warmed or unwarmed conditions to examine the effects of warming and plant removal on soil microbial community structures during the growing season in a Sibiraea angustata scrubland of the eastern Qinghai-Tibetan Plateau. The results indicate that experimental warming significantly influenced soil microbial biomass carbon (MBC) and microbial biomass nitrogen (MBN), but the warming effects were dependent on the plant treatments and sampling seasons. In the plant-removal plots, warming did not affect most of the microbial variables, while in the undisturbed plots, warming significantly increased the abundances of actinomycete and Gram-positive bacterial groups during the mid-growing season (July), but it did not affect the fungi groups. Plant removal significantly reduced fungal abundance throughout the growing season and significantly altered the soil microbial community structure in July. The interaction between warming and plant removal significantly influenced the soil MBC and MBN and the abundances of total microbes, bacteria and actinomycete throughout the growing season. Experimental warming significantly reduced the abundance of rare taxa, while the interaction between warming and plant removal tended to have strong effects on the abundant taxa. These findings suggest that the responses of soil microbial communities to warming are regulated by plant communities. These results provide new insights into how soil microbial community structure responds to climatic warming in alpine scrub ecosystems.

Plants regulate the effects of experimental warming on the soil microbial community in an alpine scrub ecosystem

PubMed Central

Ma, Zhiliang; Zhao, Wenqiang; Zhao, Chunzhang; Wang, Dong; Liu, Mei; Li, Dandan

2018-01-01

Information on how soil microbial communities respond to warming is still scarce for alpine scrub ecosystems. We conducted a field experiment with two plant treatments (plant removal or undisturbed) subjected to warmed or unwarmed conditions to examine the effects of warming and plant removal on soil microbial community structures during the growing season in a Sibiraea angustata scrubland of the eastern Qinghai–Tibetan Plateau. The results indicate that experimental warming significantly influenced soil microbial biomass carbon (MBC) and microbial biomass nitrogen (MBN), but the warming effects were dependent on the plant treatments and sampling seasons. In the plant-removal plots, warming did not affect most of the microbial variables, while in the undisturbed plots, warming significantly increased the abundances of actinomycete and Gram-positive bacterial groups during the mid-growing season (July), but it did not affect the fungi groups. Plant removal significantly reduced fungal abundance throughout the growing season and significantly altered the soil microbial community structure in July. The interaction between warming and plant removal significantly influenced the soil MBC and MBN and the abundances of total microbes, bacteria and actinomycete throughout the growing season. Experimental warming significantly reduced the abundance of rare taxa, while the interaction between warming and plant removal tended to have strong effects on the abundant taxa. These findings suggest that the responses of soil microbial communities to warming are regulated by plant communities. These results provide new insights into how soil microbial community structure responds to climatic warming in alpine scrub ecosystems. PMID:29668711

Accessing the Soil Metagenome for Studies of Microbial Diversity▿ †

PubMed Central

Delmont, Tom O.; Robe, Patrick; Cecillon, Sébastien; Clark, Ian M.; Constancias, Florentin; Simonet, Pascal; Hirsch, Penny R.; Vogel, Timothy M.

2011-01-01

Soil microbial communities contain the highest level of prokaryotic diversity of any environment, and metagenomic approaches involving the extraction of DNA from soil can improve our access to these communities. Most analyses of soil biodiversity and function assume that the DNA extracted represents the microbial community in the soil, but subsequent interpretations are limited by the DNA recovered from the soil. Unfortunately, extraction methods do not provide a uniform and unbiased subsample of metagenomic DNA, and as a consequence, accurate species distributions cannot be determined. Moreover, any bias will propagate errors in estimations of overall microbial diversity and may exclude some microbial classes from study and exploitation. To improve metagenomic approaches, investigate DNA extraction biases, and provide tools for assessing the relative abundances of different groups, we explored the biodiversity of the accessible community DNA by fractioning the metagenomic DNA as a function of (i) vertical soil sampling, (ii) density gradients (cell separation), (iii) cell lysis stringency, and (iv) DNA fragment size distribution. Each fraction had a unique genetic diversity, with different predominant and rare species (based on ribosomal intergenic spacer analysis [RISA] fingerprinting and phylochips). All fractions contributed to the number of bacterial groups uncovered in the metagenome, thus increasing the DNA pool for further applications. Indeed, we were able to access a more genetically diverse proportion of the metagenome (a gain of more than 80% compared to the best single extraction method), limit the predominance of a few genomes, and increase the species richness per sequencing effort. This work stresses the difference between extracted DNA pools and the currently inaccessible complete soil metagenome. PMID:21183646

Growth of chitinolytic dune soil beta-subclass Proteobacteria in response to invading fungal hyphae.

PubMed

De Boer, W; Klein Gunnewiek, P J; Kowalchuk, G A; Van Veen, J A

2001-08-01

It has frequently been reported that chitinolytic soil bacteria, in particular biocontrol strains, can lyse living fungal hyphae, thereby releasing potential growth substrate. However, the conditions used in such assays (high bacterial density, rich media, fragmented hyphae) make it difficult to determine whether mycolytic activity is actually of importance for the growth and survival of chitinolytic bacteria in soils. An unidentified group of beta-subclass Proteobacteria (CbetaPs) was most dominant among the culturable nonfilamentous chitinolytic bacteria isolated from Dutch sand dune soils. Here we demonstrate that the CbetaPs grew at the expense of extending fungal mycelium of three dune soil fungi (Chaetomium globosum, Fusarium culmorum, and Mucor hiemalis) under nutrient-limiting, soil-like conditions. Aggregates of CbetaPs were also often found attached to fungal hyphae. The growth of a control group of dominant nonchitinolytic dune soil bacteria (beta- and gamma-subclass Proteobacteria) was not stimulated in the mycelial zone, indicating that growth-supporting materials were not independently released in appreciable amounts by the extending hyphae. Therefore, mycolytic activities of CbetaPs have apparently been involved in allowing them to grow after exposure to living hyphae. The chitinase inhibitor allosamidin did not, in the case of Mucor, or only partially, in the cases of Chaetomium and Fusarium, repress mycolytic growth of the CbetaPs, indicating that chitinase activity alone could not explain the extent of bacterial proliferation. Chitinolytic Stenotrophomonas-like and Cytophaga-like bacteria, isolated from the same dune soils, were only slightly stimulated by exposure to fungal hyphae.

A Comparison of Microbial Community Structures by Depth and Season Under Switchgrass

NASA Astrophysics Data System (ADS)

Fansler, S. J.; Smith, J. L.; Bolton, H.; Bailey, V. L.

2008-12-01

As part of a multidisciplinary study of C sequestration in switchgrass production systems, the soil microbial community structure was monitored at 6 different depths (reaching 90 cm) in both spring and autumn. Microbial community structure was assessed using ribosomal intergenic spacer analysis (RISA), and primers were used specific to either bacteria or fungi, generating microbial community fingerprints for each taxonomic group. Diverse microbial communities for both groups were detected throughout the soil profile. It is notable that while community structure clearly changed with depth, there was the deepest soil samples still retained relatively diverse communities. Seasonally, differences are clearly evident within plots at the surface. As the plots were replicated, significant differences in the community fingerprints with depth and season are reported.

A Mesophilic, Autotrophic, Ammonia-Oxidizing Archaeon of Thaumarchaeal Group I.1a Cultivated from a Deep Oligotrophic Soil Horizon

PubMed Central

Jung, Man-Young; Park, Soo-Je; Kim, So-Jeong; Kim, Jong-Geol; Sinninghe Damsté, Jaap S.

2014-01-01

Soil nitrification plays an important role in the reduction of soil fertility and in nitrate enrichment of groundwater. Various ammonia-oxidizing archaea (AOA) are considered to be members of the pool of ammonia-oxidizing microorganisms in soil. This study reports the discovery of a chemolithoautotrophic ammonia oxidizer that belongs to a distinct clade of nonmarine thaumarchaeal group I.1a, which is widespread in terrestrial environments. The archaeal strain MY2 was cultivated from a deep oligotrophic soil horizon. The similarity of the 16S rRNA gene sequence of strain MY2 to those of other cultivated group I.1a thaumarchaeota members, i.e., Nitrosopumilus maritimus and “Candidatus Nitrosoarchaeum koreensis,” is 92.9% for both species. Extensive growth assays showed that strain MY2 is chemolithoautotrophic, mesophilic (optimum temperature, 30°C), and neutrophilic (optimum pH, 7 to 7.5). The accumulation of nitrite above 1 mM inhibited ammonia oxidation, while ammonia oxidation itself was not inhibited in the presence of up to 5 mM ammonia. The genome size of strain MY2 was 1.76 Mb, similar to those of N. maritimus and “Ca. Nitrosoarchaeum koreensis,” and the repertoire of genes required for ammonia oxidation and carbon fixation in thaumarchaeal group I.1a was conserved. A high level of representation of conserved orthologous genes for signal transduction and motility in the noncore genome might be implicated in niche adaptation by strain MY2. On the basis of phenotypic, phylogenetic, and genomic characteristics, we propose the name “Candidatus Nitrosotenuis chungbukensis” for the ammonia-oxidizing archaeal strain MY2. PMID:24705324

A mesophilic, autotrophic, ammonia-oxidizing archaeon of thaumarchaeal group I.1a cultivated from a deep oligotrophic soil horizon.

PubMed

Jung, Man-Young; Park, Soo-Je; Kim, So-Jeong; Kim, Jong-Geol; Sinninghe Damsté, Jaap S; Jeon, Che Ok; Rhee, Sung-Keun

2014-06-01

Soil nitrification plays an important role in the reduction of soil fertility and in nitrate enrichment of groundwater. Various ammonia-oxidizing archaea (AOA) are considered to be members of the pool of ammonia-oxidizing microorganisms in soil. This study reports the discovery of a chemolithoautotrophic ammonia oxidizer that belongs to a distinct clade of nonmarine thaumarchaeal group I.1a, which is widespread in terrestrial environments. The archaeal strain MY2 was cultivated from a deep oligotrophic soil horizon. The similarity of the 16S rRNA gene sequence of strain MY2 to those of other cultivated group I.1a thaumarchaeota members, i.e., Nitrosopumilus maritimus and "Candidatus Nitrosoarchaeum koreensis," is 92.9% for both species. Extensive growth assays showed that strain MY2 is chemolithoautotrophic, mesophilic (optimum temperature, 30°C), and neutrophilic (optimum pH, 7 to 7.5). The accumulation of nitrite above 1 mM inhibited ammonia oxidation, while ammonia oxidation itself was not inhibited in the presence of up to 5mM ammonia. The genome size of strain MY2 was 1.76 Mb, similar to those of N. maritimus and "Ca. Nitrosoarchaeum koreensis," and the repertoire of genes required for ammonia oxidation and carbon fixation in thaumarchaeal group I.1a was conserved. A high level of representation of conserved orthologous genes for signal transduction and motility in the noncore genome might be implicated in niche adaptation by strain MY2. On the basis of phenotypic, phylogenetic, and genomic characteristics, we propose the name "Candidatus Nitrosotenuis chungbukensis" for the ammonia-oxidizing archaeal strain MY2.

Changes in the structure and function of soil ecosystems in soils contaminated with heavy metals

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kuperman, R.; Parmelee, R.; Carreiro, M.

1995-09-01

The structure and function of soil communities in an area with a wide range of concentrations of heavy metals was studied in portions of the U.S. Army`s Aberdeen Proving Ground, Maryland. The study included survey of soil macro- and microinvertebrate communities, soil microorganisms, enzyme activities and the rates of nutrient dynamics in soil. Soil macroinvertebrate communities showed significant reductions in the adundance of several taxonomic and functional groups in contaminated areas. The total numbers of nematodes and numbers of fungivore, bacterivore and omnivore-predator nematodes were lower in the more contaminated areas. The numbers of active bacteria and fungi were lowermore » in areas of soil contamination. Significant reduction in the activities of all enzymes closely paralleled the increase in heavy metal concentrations. Ten-to-fifty fold reductions in enzyme activities were observed as heavy metal concentrations increased. These results suggest that soil contamination with heavy metals may have detrimental effects on soil biota and the rates of organic matter degradation and subsequent release of nutrients to aboveground communities in the area.« less

Changes in the structure and function of soil ecosystems in soils contaminated with heavy metals

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kuperman, R.; Parmelee, R.; Carreiro, M.

1995-06-01

The structure and function of soil communities in an area with a wide range of concentrations of heavy metals was studied in portions of the U.S. Army`s Aberdeen Proving Ground, Maryland. The study included survey of soil macro- and microinvertebrate communities, soil microorganisms, enzyme activities and the rates of nutrient dynamics in soil. Soil macroinvertebrate communities showed significant reductions in the abundance of several taxonomic and functional groups in contaminated areas. The total numbers of nematodes and numbers of fungivore, bacterivore and omnivore-predator nematodes were lower in the more contaminated areas. The numbers of active bacteria and fungi were lowermore » in areas of soil contamination. Significant reduction in the activities of all enzymes closely paralleled the increase in heavy metal concentrations. Ten-to-fifty fold reductions in enzyme activities were observed as heavy metal concentrations increased. These results suggest that soil contamination with heavy metals may have detrimental effects on soil biota and the rates of organic matter degradation and subsequent release of nutrients to aboveground communities in the area.« less

Soil erosion risk assessment using interviews, empirical soil erosion modeling (RUSLE) and fallout radionuclides in a volcanic crater lake watershed subjected to land use change, western Uganda

NASA Astrophysics Data System (ADS)

De Crop, Wannes; Ryken, Nick; Tomma Okuonzia, Judith; Van Ranst, Eric; Baert, Geert; Boeckx, Pascal; Verschuren, Dirk; Verdoodt, Ann

2017-04-01

Population pressure results in conversion of natural vegetation to cropland within the western Ugandan crater lake watersheds. These watersheds however are particularly prone to soil degradation and erosion because of the high rainfall intensity and steep topography. Increased soil erosion losses expose the aquatic ecosystems to excessive nutrient loading. In this study, the Katinda crater lake watershed, which is already heavily impacted by agricultural land use, was selected for an explorative study on its (top)soil characteristics - given the general lack of data on soils within these watersheds - as well as an assessment of soil erosion risks. Using group discussions and structured interviews, the local land users' perceptions on land use, soil quality, soil erosion and lake ecology were compiled. Datasets on rainfall, topsoil characteristics, slope gradient and length, and land use were collected. Subsequently a RUSLE erosion model was run. Results from this empirical erosion modeling approach were validated against soil erosion estimates based on 137Cs measurements.

Construction of an Yucatec Maya soil classification and comparison with the WRB framework

PubMed Central

2010-01-01

Background Mayas living in southeast Mexico have used soils for millennia and provide thus a good example for understanding soil-culture relationships and for exploring the ways indigenous people name and classify the soils of their territory. This paper shows an attempt to organize the Maya soil knowledge into a soil classification scheme and compares the latter with the World Reference Base for Soil Resources (WRB). Methods Several participative soil surveys were carried out in the period 2000-2009 with the help of bilingual Maya-Spanish-speaking farmers. A multilingual soil database was built with 315 soil profile descriptions. Results On the basis of the diagnostic soil properties and the soil nomenclature used by Maya farmers, a soil classification scheme with a hierarchic, dichotomous and open structure was constructed, organized in groups and qualifiers in a fashion similar to that of the WRB system. Maya soil properties were used at the same categorical levels as similar diagnostic properties are used in the WRB system. Conclusions The Maya soil classification (MSC) is a natural system based on key properties, such as relief position, rock types, size and quantity of stones, color of topsoil and subsoil, depth, water dynamics, and plant-supporting processes. The MSC addresses the soil properties of surficial and subsurficial horizons, and uses plant communities as qualifier in some cases. The MSC is more accurate than the WRB for classifying Leptosols. PMID:20152047

Construction of an Yucatec Maya soil classification and comparison with the WRB framework.

PubMed

Bautista, Francisco; Zinck, J Alfred

2010-02-13

Mayas living in southeast Mexico have used soils for millennia and provide thus a good example for understanding soil-culture relationships and for exploring the ways indigenous people name and classify the soils of their territory. This paper shows an attempt to organize the Maya soil knowledge into a soil classification scheme and compares the latter with the World Reference Base for Soil Resources (WRB). Several participative soil surveys were carried out in the period 2000-2009 with the help of bilingual Maya-Spanish-speaking farmers. A multilingual soil database was built with 315 soil profile descriptions. On the basis of the diagnostic soil properties and the soil nomenclature used by Maya farmers, a soil classification scheme with a hierarchic, dichotomous and open structure was constructed, organized in groups and qualifiers in a fashion similar to that of the WRB system. Maya soil properties were used at the same categorical levels as similar diagnostic properties are used in the WRB system. The Maya soil classification (MSC) is a natural system based on key properties, such as relief position, rock types, size and quantity of stones, color of topsoil and subsoil, depth, water dynamics, and plant-supporting processes. The MSC addresses the soil properties of surficial and subsurficial horizons, and uses plant communities as qualifier in some cases. The MSC is more accurate than the WRB for classifying Leptosols.

Input related microbial carbon dynamic of soil organic matter in particle size fractions

NASA Astrophysics Data System (ADS)

Gude, A.; Kandeler, E.; Gleixner, G.

2012-04-01

This paper investigated the flow of carbon into different groups of soil microorganisms isolated from different particle size fractions. Two agricultural sites of contrasting organic matter input were compared. Both soils had been submitted to vegetation change from C3 (Rye/Wheat) to C4 (Maize) plants, 25 and 45 years ago. Soil carbon was separated into one fast-degrading particulate organic matter fraction (POM) and one slow-degrading organo-mineral fraction (OMF). The structure of the soil microbial community were investigated using phospholipid fatty acids (PLFA), and turnover of single PLFAs was calculated from the changes in their 13C content. Soil enzyme activities involved in the degradation of carbohydrates was determined using fluorogenic MUF (methyl-umbelliferryl phosphate) substrates. We found that fresh organic matter input drives soil organic matter dynamic. Higher annual input of fresh organic matter resulted in a higher amount of fungal biomass in the POM-fraction and shorter mean residence times. Fungal activity therefore seems essential for the decomposition and incorporation of organic matter input into the soil. As a consequence, limited litter input changed especially the fungal community favouring arbuscular mycorrhizal fungi. Altogether, supply and availability of fresh plant carbon changed the distribution of microbial biomass, the microbial community structure and enzyme activities and resulted in different priming of soil organic matter. Most interestingly we found that only at low input the OMF fraction had significantly higher calculated MRT for Gram-positive and Gram-negative bacteria suggesting high recycling of soil carbon or the use of other carbon sources. But on average all microbial groups had nearly similar carbon uptake rates in all fractions and both soils, which contrasted the turnover times of bulk carbon. Hereby the microbial carbon turnover was always faster than the soil organic carbon turnover and higher carbon input reduced the carbon storage efficiency from 51 % in the low input to 20 %. These findings suggest that microbial community preferentially assimilated fresh carbon sources but also used recycled existing soil carbon. However, the priming rate was drastically reduced under carbon limitation. In consequence at high carbon availability more carbon was respired to activate the existing soil carbon (priming) whereas at low carbon availability new soil carbon was formed at higher efficiencies.

New Approach for Fractioning Metal Compounds Studies in Soils

NASA Astrophysics Data System (ADS)

Minkina, Tatiana; Motuzova, Galina; Mandzhieva, Saglara; Bauer, Tatiana; Burachevskaya, Marina; Sushkova, Svetlana; Nevidomskaya, Dina; Kalinitchenko, Valeriy

2016-04-01

A combined approach for fractioning metal compounds in soils on the basis of sequential (Tessier, 1979) and parallel extractions (1 N NH4Ac, pH 8; 1% EDTA in NH4Ac; and 1N HCl) is proposed. Metal compounds in sequential and parallel extracts are grouped according to the strength of their bonds with soil components. A given group includes metal compounds with similar strengths of bonds and, hence, with similar migration capacities. The groups of firmly and loosely bound metal compounds can be distinguished. This approach has been used to assess the group composition of Zn, Cu, and Pb compounds in an ordinary chernozem and its changes upon the soil contamination with metals. Contamination of an ordinary chernozem from Rostov oblast with heavy metals caused a disturbance of the natural ratios between the metal compounds. In the natural soil, firmly bound metals predominate (88-95%of the total content), which is mainly caused by the fixation of metals in lattices of silicate minerals (56-83%of the total content). The mobility of the metals in the natural soil is low (5-12%) and is mainly related to metal compounds loosely bound with the soil carbonates. Upon the soil contamination with metals (application rates of 100-300 mg/kg), the content of all the metal compounds increases, but the ratio between them shifts towards a higher portion of the potentially mobile metal compounds (up to 30-40% of the bulk contents of the metals). Organic substances and non-silicate Fe, Al, and Mn minerals become the main carriers of the firmly and loosely bound metals. The strengths of their bonds with Cu, Pb, and Zn differ. Lead in the studied chernozems is mainly fixed in a loosely bound form with organic matter, whereas copper and zinc are fixed both by the organic matter and by the non-silicate Fe, Al, and Mn compounds. Firm fixation of the applied Cu and Pb is mainly ensured by the soil organic matter and non-silicate minerals, whereas firm fixation of Zn is mainly due to non-silicate minerals. The amount of the applied metals fixed in the lattices of the silicate minerals is insignificant. Hence, all the soil components participate in the loose and firm fixation of the metals. The leading role in mobilization-immobilization of natural metal compounds in the ordinary chernozem belongs to carbonates and silicate minerals. For exogenic metal compounds, this role belongs to the soil organic matter and Fe-Mn oxides and hydroxides. The obtained data are important for ecology because they enable us to predict the transformation of soil components responsible for metal fixation and the possibility of their secondary mobilization. The danger of metal mobilization is more probable for metal compounds with organic substances that are particularly active in the loose binding of the introduced metals. This work was supported by the Ministry of Science of the Russian Federation, project no. 5.885.2014/K, the Russian Foundation for Basic Research, projects no. № 14-05-00586_a.

Sorption mechanism of enrofloxacin on humic acids extracted from Brazilian soils.

PubMed

Martínez-Mejía, Mónica J; Sato, Isabela; Rath, Susanne

2017-07-01

Veterinary antimicrobials are emerging environmental contaminants of concern. In this study, the sorption of enrofloxacin (ENR) onto humic acids (HAs) extracted from three Brazilian soils was evaluated. HAs were characterized by elemental analysis and solid 13 C nuclear magnetic resonance spectroscopy. The sorption of ENR onto HAs was at least 20-fold higher than onto the soils from which they were separated. Ionic and cation bridging are the primary interactions involved. The interactions driven by cation exchange are predominant on HAs, which appear to have abundant carboxylic groups and a relatively high proportion of H-bond donor moieties with carbohydrate-like structures. Interactions explained by cation bridging and/or surface complexation on HAs are facilitated by moieties containing conjugated ligands, significant content of oxygen-containing functional groups, such as phenolic-OH or lignin-like structures. HAs containing electron-donating phenolic moieties and carboxylic acid ligand groups exhibit a sorption mechanism that is primarily driven by strong metal binding, favoring the formation of ternary complexes between functional groups of the organic matter and drugs.

Genome sequence of "Pedosphaera parvula" Ellin514, an aerobic Verrucomicrobial isolate from pasture soil.

PubMed

Kant, Ravi; van Passel, Mark W J; Sangwan, Parveen; Palva, Airi; Lucas, Susan; Copeland, Alex; Lapidus, Alla; Glavina del Rio, Tijana; Dalin, Eileen; Tice, Hope; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Chertkov, Olga; Larimer, Frank W; Land, Miriam L; Hauser, Loren; Brettin, Thomas S; Detter, John C; Han, Shunsheng; de Vos, Willem M; Janssen, Peter H; Smidt, Hauke

2011-06-01

"Pedosphaera parvula" Ellin514 is an aerobically grown verrucomicrobial isolate from pasture soil. It is one of the few cultured representatives of subdivision 3 of the phylum Verrucomicrobia. Members of this group are widespread in terrestrial environments.

Biogeography of free-living soil nematodes from the perspective of plate tectonics.

PubMed

Ferris, V R; Goseco, C G; Ferris, J M

1976-08-06

In this first biogeographical synthesis based on the morphology and known distribution of a group of free-living soil nematodes, data indicate a pre-Jurassic origin followed by West Gondwanaland radiation for some genera and Laurasian radiation for others.

Effect of mineral fertilizers on microbiological and biochemical characteristics of agrochernozem.

NASA Astrophysics Data System (ADS)

Tkhakakhova, Azida; Vasilenko, Elena; Kutovaya, Olga

2013-04-01

The problem of reproduction of soil fertility of chernozems are solved with integrated action, the ecological condition of the soil can be assessed by the activity of physiological groups of microorganisms. Microorganisms are the most important in the transformation of compounds of biogenic elements and therefore it is very interesting to study the nature of the relationship of some biochemical parameters with the development of microflora and micromycetes eco-trophic groups. Agrochemical researches have been conducted at agroecological station "Stone Steppe" in central Russia. Experiment variants: 1 - Control (without fertilizer); 2 - N10,5 P10,5 K10,5; 3 - N56,5 P56,5 K56,5; 4 - deposit soil. Mobile forms of humic substances (mobile carbon and carbon water extract) have changed during the cultivation of the chernozem soil. Amount of mobile humus has doubled in the variants with the use of mineral fertilizers. It's just mobile humus which determines the soil response to any impact, especially ecological. Water extract carbon - organic matter contained in the soil solution and the subject of assimilation of plants and microorganisms. It increased in agricultural soils. The total nitrogen and nitrate nitrogen amount in the variants of agricultural use is higher than in the deposit soil. This is probably because of the soil aeration, the release of nitrogen from the labile humus due to biological activity and nitrification. Amount of ammonia nitrogen has increased in the variant with the use of high doses of fertilizers. Deposit soil (40 years without agricultural use) has a lower, but more stable microbial activity. Process of anoxic decomposition of plant remains develops more active than others, due to the natural structure of the soil anaerobiosis in the spring time. Processes of nitrogen cycle (nitrogen accumulation - fixation of atmospheric nitrogen, nitrogen losses - denitrification) are progressing very intensively in agricultural soil with fertilizer. Content of humic substances in the soil affects all groups of microorganisms, except actinomycetes and cellulolytices. These microorganisms have an active system of hydrolytic enzymes that taking action on hard organic materials. Movable carbon largely affects the anaerobic microorganisms nitrogen cycle and inverse relationship takes place during with the developing of actinomycetes. Correlation between the aqueous extract carbon with cellulolitic bacteria, aerobic nitrogen-fixing bacteria and amylolytic microorganisms using mineral nitrogen is the highest. Organic material of the soil solution in the growing season associated with NO3-. The content of total nitrogen and nitrate associated with anaerobic denitrifying bacteria, nitrogen-fixing bacteria and amylolytic microorganisms. The content of ammonia nitrogen N-NH4+ renders very strong influence on soil microorganisms. A positive correlation is observed with ammonifiers, nitrogen-fixing bacteria, denitrifying bacteria. There is inverse relationship with actinomycetes (R = - 0,96) and anaerobic cellulolitic bacteria (R = - 0,80). Representatives of these microorganisms are active participants in the carbon cycle; their development in the presence of the ammonium form of nitrogen is possibly suspended. There is a complicated relationship of biochemical indicators of the development of soil microorganisms in the black earth. The problem preserving stable humus and physiologically active mobile forms that affect plant growth can only be achieved while maintaining the living organisms in it.

Prokaryotic communities differ along a geothermal soil photic gradient.

PubMed

Meadow, James F; Zabinski, Catherine A

2013-01-01

Geothermal influenced soils exert unique physical and chemical limitations on resident microbial communities but have received little attention in microbial ecology research. These environments offer a model system in which to investigate microbial community heterogeneity and a range of soil ecological concepts. We conducted a 16S bar-coded pyrosequencing survey of the prokaryotic communities in a diatomaceous geothermal soil system and compared communities across soil types and along a conspicuous photic depth gradient. We found significant differences between the communities of the two different soils and also predictable differences between samples taken at different depths. Additionally, we targeted three ecologically relevant bacterial phyla, Cyanobacteria, Planctomycetes, and Verrucomicrobia, for clade-wise comparisons with these variables and found strong differences in their abundances, consistent with the autecology of these groups.

Mineralogy of parent rock and peaty-podzolic soil of Iremel Ridge, Southern Urals

NASA Astrophysics Data System (ADS)

Khalitov, R. M.; Perova, E. N.; Abakumov, E. V.; Suleimanov, R. R.

2017-08-01

The mineralogy of soils and parent rocks of the Iremel Ridge has been studied by the methods of micromorphology, laser diffraction, computed X-ray microtomography, and X-ray fluorescence analysis. In hard rock and soil, the major minerals have been identified: quartz, illite, and a chlorite-group mineral (Fe analogue of sudoite), as well as accessory minerals: monazite, xenotime, rutile, zircon, and florencite. It has been found that chlorite, illite, and quartz are present in all horizons of the studied peaty-podzolic soil. Insignificant amounts of mixed-layered mineral and kaolinite could be suggested in the T and EL horizons of peaty-podzolic soil. The mixed-layered mineral is most probably of soil origin, which is related to the transformation of illites inherited from the parent rock under acidic conditions.

[Effects of organic and inorganic fertilizers on emission and sources of N2O in vegetable soils.

PubMed

Lin, Wei; Ding, Jun Jun; Li, Yu Zhong; Xu, Chun Ying; Li, Qiao Zhen; Zheng, Qian; Zhuang, Shan

2018-05-01

To clarify the microbial pathway of the N 2 O production and consumption under different fertilizers and provide theoretical basis for the reduction of N 2 O emission and rational management of fertilization in vegetable soils, we examined dynamics of N 2 O flux and isotope signatures under different fertilizer treatments in the vegetable soils of Beijing, by setting up four treatments (organic-acetylene, organic-nonacetylene, inorganic-acetylene, inorganic-nonacetylene) and using the stable isotope technique of natural N 2 O abundance. The results showed that the cumulative N 2 O emission from organic-acetylene group, organic-nonacetylene group, inorganic-acetylene group and inorganic-nonacetylene group was (374±37), (283±34), (458±36), (355±41) g·m -2 in cabbage growing season, respectively. N 2 O fluxes were significantly lower in treatments with organic fertilizer than those with inorganic fertilizer and significantly higher in acetylene group than nonacetylene group. The degree of N 2 O reduction were similar in both fertilizer treatments, and higher nitrification was found in inorganic fertilizer than organic fertilizer treatments. Acetylene only inhibited partial nitrification and partial N 2 O reduction at the peak of N 2 O emission. When the emission was reduced, N 2 O reduction could be completely suppressed. Therefore, the inorganic fertilizer might trigger nitrification and promote higher N 2 O emission. The high concentration of N 2 O could withstand that acetylene to inhibite N 2 O reduction. Hence, using organic fertilizers instead of some inorganic ones could effectively reduce N 2 O emission in vegetable soils of Beijing. The N 2 O concentration threshold should be considered when we identify N 2 O source by acetylene inhibition method.

On the role of soil fauna in providing soil functions - a meta study

NASA Astrophysics Data System (ADS)

Lang, Birgit; Russell, David J.; Vogel, Hans-Jörg; Wollschläger, Ute

2017-04-01

Fertile soils are fundamental for the production of biomass and therefore for the provision of goods such as food or fuel. However, soils are threatened by e.g. land degradation, but once lost their functionality cannot simply be replaced as soils are complex systems developed over long time periods. Thus, to develop strategies for sustainable soil use and management, we need a comprehensive functional understanding of soil systems. To this end, the interdisciplinary research program "Soil as a Natural Resource for the Bio-Economy - BonaRes" was launched by the German Federal Government in 2015. One part of this program is the development of a Knowledge Centre for soil functions and services. As part of the Knowledge Centre, we focus on the identification and quantification of biological drivers of soil functions. Based on a systematic review of existing literature, we assess the importance of different soil faunal groups for the soil functions and processes most relevant to agricultural production (i.e. decomposition, mineralization, soil structuring. Additionally, we investigate direct impacts of soil fauna on soil properties (e.g. aggregation, pore volume). As site specific conditions such as climate, soil type or management practices affect soil fauna and their performance, these responses must also be taken into account. In the end, our findings will be used in the development of modeling tools aiming to predict the impacts of different management measures on soil ecosystem services and functions.

History of Soil Survey and Evolution of the Brazilian Soil Classification System - SiBCS

NASA Astrophysics Data System (ADS)

Cunha dos Anjos, Lúcia Helena; Csekö Nolasco de Carvalho, Claudia; Homem Antunes, Mauro Antonio; Muggler, Cristine Carole

2014-05-01

In Brazil soil surveys started around 1940 and the first map with soil information of São Paulo State was published in 1943. The Committee of Soils of the National Service for Agronomic Research was created in 1947 by the Agriculture Ministry and became an historical landmark for soil survey in Brazil. In 1953, the National Program of soil survey was approved and the first soil map and report of Rio de Janeiro State was released in 1958, followed by São Paulo State in 1960. This is also the origin of Embrapa Soil Research institution. Other milestones were the soil surveys published by the Agronomic Institute of Campinas (IAC) and the natural resources studies published within the RADAMBRASIL Project, initially planned for the Amazon region and later covering the whole country. Many soil studies followed and a comprehensive knowledge of tropical soils was achieved resulting in successful technologies for agriculture production, in lands considered by many as of "low fertility and acid soils with limited or no agricultural potential". However, detailed soil surveys are still lacking; only 5% of the country soils are mapped in 1:25.000 scales, and 15-20% in 1:100.000. In the first soil survey reports of Rio de Janeiro (1958) and São Paulo (1960), soil classes were defined according to Baldwin, Kellog & Thorp (Yearbook of Agriculture for 1938), and Thorp & Smith (Soil Science, 67, 1949) publications. It was already clear that the existing classification systems were not adequate to represent the highly weathered tropical soils of the large old landscapes in the cerrado (savanna like) region, or the soils formed on recent hydromorphic conditions at the Amazon Basin and Pantanal region. A national classification system to embody the country's large territory and environmental variation from tropical to subtropical and semiarid conditions, as well as the diversity of soil forming processes in old and new landscapes had to be developed. In 1964, the first attempt of a national soil classification was presented by Marcelo Camargo (Embrapa Soils) and Jacob Bennema (FAO adviser). When Soil Taxonomy was first published in 1975, a field workshop was held in Brazil, and the system was not accepted by the country scientists; one main reason was the usage of climate as a main attribute for suborders. In 1978, the first national soil field correlation meeting was held with the goal of developing the national system, giving origin to the Brazilian Soil Classification System (SiBCS). In 1980, a working group was created by Embrapa Soils and other institutes resulting in four approximations of the system. In 1999, the first edition of the SiBCS was released, followed by a second edition in 2006 and the third in 2013. The SiBCS is a hierarchic system, based on morphogenetic soil attributes, with six categorical levels: order, suborder, great group, subgroup, family, and series. It has 13 soil orders, and it is structured as a key down to subgroup level. Many soil attributes are based on concepts adopted by the Soil Taxonomy (United States) and by the World Reference Base for Soil Resources (WRB - FAO). The development of the SiBCS is supervised by a national executive committee, and information is available at http://www.cnps.embrapa.br/sibcs (in Portuguese).

Priming alters soil carbon dynamics during forest succession

NASA Astrophysics Data System (ADS)

Qiao, Na; Xu, Xingliang; Wang, Juan; Kuzyakov, Yakov

2017-04-01

The mechanisms underlying soil carbon (C) dynamics during forest succession remain challenged. We examined priming of soil organic matter (SOM) decomposition along a vegetation succession: grassland, young and old-growth forests. Soil C was primed much more strongly in young secondary forest than in grassland or old-growth forest. Priming resulted in large C losses (negative net C balance) in young-forest soil, whereas C stocks increased in grassland and old-growth forest. Microbial composition assessed by phospholipid fatty acids (PLFA) and utilization of easily available organics (13C-PLFA) indicate that fungi were responsible for priming in young-forest soils. Consequently, labile C inputs released by litter decomposition and root exudation determine microbial functional groups that decompose SOM during forest succession. These findings provide novel insights into connections between SOM dynamics and stabilization with microbial functioning during forest succession and show that priming is an important mechanism for contrasting soil C dynamics in young and old-growth forests.

Vanadium in landscape components of western Transbaikalia

NASA Astrophysics Data System (ADS)

Kashin, V. K.

2017-10-01

Vanadium in soil-forming rocks, soils, and vegetation of forest-steppe, steppe, and dry-steppe landscapes of Transbaikalia has been studied. The mean element contents in rocks and soils are equal to its mean natural abundances (clarke values). The content of vanadium in soils is strictly determined by its content in parent materials; its dependence on the vanadium concentration in plants and on the soil pH and humus is less pronounced. With respect to the coefficient of biological uptake by plants, vanadium is assigned to the group of elements of slight accumulation (0.10-0.33) on mineral soils and of moderate accumulation (1.1-1.5) on peat bog soils. The mean vanadium concentration in steppe, meadow, and cultivated vegetation exceeds the norm for animals by 1.7-2.6 times but does not rich toxic levels. Vanadium uptake by plants is most intensive in meadow cenoses and is less intensive in dry-steppe cenoses.

Covalent binding of reduced metabolites of [{sup 15}N{sub 3}]TNT to soil organic matter during a bioremediation process analyzed by {sup 15}N NMR spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Achtnich, C.; Fernandes, E.; Bollag, J.M.

1999-12-15

Evidence is presented for the covalent binding of biologically reduced metabolites of 2,4,6-{sup 15}N{sub 3}-trinitrotoluene (TNT) to different soil fractions, using liquid {sup 15}N NMR spectroscopy. A silylation procedure was used to release soil organic matter from humin and whole soil for spectroscopic measurements. TNT-contaminated soil was spiked with 2,4,6-{sup 15}N{sub 3}-trinitrotoluene and {sup 14}C-ring labeled TNT, before treatment in a soil slurry reactor. During the anaerobic/aerobic incubation the amount of radioactivity detected in the fulvic and humic acid fractions did not change significantly whereas the radioactivity bound to humin increased to 71%. The {sup 15}N NMR spectra of themore » fulvic acid samples were dominated by a large peak that corresponded to aliphatic amines or ammonia. In the early stages of incubation, {sup 15}N NMR analysis of the humic acids indicated bound azoxy compounds. The signals arising from nitro and azoxy groups disappeared with further anaerobic treatment. At the end of incubation, the NMR shifts showed that nitrogen was covalently bound to humic acid as substituted amines and amides. The NMR spectra of the silylated humin suggest formation of azoxy compounds and imine linkages. Bound metabolites possessing nitro groups were also detected. Primary amines formed during the anaerobic incubation disappeared during the aerobic treatment. Simultaneously, the amount of amides and tertiary amines increased. Nitro and azoxy groups of bound molecules were still present in humin at the end of the incubation period. Formation of azoxy compounds from partially reduced TNT followed by binding and further reduction appears to be an important mechanism for the immobilization of metabolites of TNT to soil.« less

Healthy sand : a farmers initiative on soil protection and ecosystem service management

NASA Astrophysics Data System (ADS)

Smit, Annemieke; Verzandvoort, Simone; Kuikman, Peter; Stuka, Jason; Morari, Francesco; Rienks, Willem; Stokkers, Jan; Hesselink, Bertus; Lever, Henk

2015-04-01

In a small region in the Netherlands a group of dairy farmers (cooperated in a foundation HOE Duurzaam) cooperates with the drinking water company and together aim for a more healthy soil. They farm a sandy soil, which is in most of the parcels low in organic matter. The local farmers perceive loss of soil fertility and blame loss of soil organic matter for that. All farmers expect that increasing the soil organic matter content will retain more nitrates in the soil, leading to a reduction in nitrate leaching and a higher nutrient availability for the crops, forage and grass and probably low urgency for grassland renewal. The drinking water company in the area also has high expectations that a higher SOM content does relate to higher quality of the (drinking) water and lower costs to clean and filter the water to meet drinking water quality requirements. Most farmers in the area face suboptimal moisture conditions and thrive for increasing the soil organic matter content and improving the soil structure as key factors to relieve, soil moisture problems both in dry (drought) and wet (flooding) periods. A better water holding capacity of the soil provides benefits for the regional water board as this reduces leaching and run-off. The case study, which is part of the Recare-project, at first glance deals with soil management and technology to improve soil quality. However, the casus in fact deals with social innovation. The real challenge to this group of neighbours, farmers within a small region, and to science is how to combine knowledge and experience on soil management for increasing the content of soil organic matter and how to recognize the ecosystem services that are provided by the adapted and more 'healthy' soils. And also how to formalize relations between costs and benefits of measures taken in the field and how these could be financially rewarded from an agreed and acceptable financial awarding scheme based on payments for securing soil carbon stocks and increasing carbon fluxes to soils. In the presentation we want to discuss • what choices in optimal farming practices and strategy for Dutch farmers help to increase soil organic matter content in the soil in the next 5-10 years? • What role can the foundation play in organising the practices and the payment for extra activities, collecting results and present them to benefitting stakeholders? • What valuation of ecosystem service and which payment scheme would satisfy the needs of both farmers as recipient and water board and regional government as beneficiaries and financing body for ecosystem service provided for.

The Italian contribution to the World Soils Book Series: The Soils of Italy

NASA Astrophysics Data System (ADS)

Costantini, Edoardo; Dazzi, Carmelo

2015-04-01

Passing to the age of "Anthropocene", man has forgotten the ancient bond that ties him to the soil, and turning from "homo sapiens" to "homo technologicus" he has stopped considering how much his well-being and the quality of life on Earth are fundamentally linked to the quality of soils. Yet today, as never before, maintaining the quality of soils is of paramount relevance for the sustainable development of humanity. Unfortunately, as soils are a crypto-resource, not many lay-people recognize its importance in the biosphere equilibrium and, unfortunately, seldom consider it among the environmental resources that must be protected! To fill such a gap in knowledge, the Springer editor, under the leading of professor Alfred Hartemink, has published the World Soils Book Series, whose aim is to spread the knowledge on the soils in a particular country in a concise and highly reader-friendly way. The volume "The Soils of Italy" belongs to this international series of books. Its ambitious goals are to establish a broad base for the knowledge of the soils of Italy, and to give useful information on i) their characteristics, diffusion and fertility, ii) the main threats they are subjected, and iii) the future scenarios of relationships between soil sciences and the disciplines, which are not traditionally linked to the world of agriculture, such as urban development, medicine, economics, sociology, archaeology. In Italy there is about 75% of the global pedodiversity. A vast majority of the WRB reference soil groups (25 out of 32), as well as soil orders of Soil Taxonomy (10 out of 12) are represented in the main Italian soil typological units (STUs). More than a fourth of STUs belongs to Cambisols, more than a half to only four reference soil groups (Cambisols, Luvisols, Regosols, Phaeozems), and 88% to nine RSGs (the former plus Calcisols, Vertisols, Fluvisols, Leptosols, and Andosols), while the remaining 16 RSGs are represented in 12% of STUs. The clear skewness and lognormal distribution of STUs demonstrate the utmost endemic nature of most of Italian soils, which make many of them threatened with extinction. The writing of this book was attended by numerous experts from several Italian universities and research centres, which have taken on the responsibility of editing the various chapters. A specific characteristic of the book is that it collects scripts of both mature and young soil scientists, who contributed in a decisive way to render the text up-to-date and, hopefully, attractive. It is a common aspiration of the authors that this book could provide interesting information to soil experts and students, so that they can enhance the attention of the public on the Italian soils: a very limited but very economically and environmentally important resource of Italy.

A persuasive concept of research-oriented teaching in Soil Biochemistry

NASA Astrophysics Data System (ADS)

Blagodatskaya, Evgenia; Kuzyakova, Irina

2013-04-01

One of the main problems of existing bachelor programs is disconnection of basic and experimental education: even during practical training the methods learned are not related to characterization of soil field experiments and observed soil processes. We introduce a multi-level research-oriented teaching system involving Bachelor students in four-semesters active study by integration the basic knowledge, experimental techniques, statistical approaches, project design and it's realization.The novelty of research-oriented teaching system is based 1) on linkage of ongoing experiment to the study of statistical methods and 2) on self-responsibility of students for interpretation of soil chemical and biochemical characteristics obtained in the very beginning of their study by analysing the set of soil samples allowing full-factorial data treatment. This experimental data set is related to specific soil stand and is used as a backbone of the teaching system accelerating the student's interest to soil studies and motivating them for application of basic knowledge from lecture courses. The multi-level system includes: 1) basic lecture course on soil biochemistry with analysis of research questions, 2) practical training course on laboratory analytics where small groups of students are responsible for analysis of soil samples related to the specific land-use/forest type/forest age; 3) training course on biotic (e.g. respiration) - abiotic (e.g. temperature, moisture, fire etc.) interactions in the same soil samples; 4) theoretical seminars where students present and make a first attempt to explain soil characteristics of various soil stands as affected by abiotic factors (first semester); 5) lecture and seminar course on soil statistics where students apply newly learned statistical methods to prove their conclusions and to find relationships between soil characteristics obtained during first semester; 6) seminar course on project design where students develop their scientific projects to study the uncertainties revealed in soil responses to abiotic factors (second and third semesters); 7) Lecture, seminar and training courses on estimation of active microbial biomass in soil where students realize their projects applying a new knowledge to the soils from the stands they are responsible for (fourth semester). Thus, during four semesters the students continuously combine the theoretical knowledge from the lectures with their own experimental experience, compare and discuss results of various groups during seminars and obtain the skills in project design. The successful application of research-oriented teaching system in University of Göttingen allowed each student the early-stage revealing knowledge gaps, accelerated their involvement in ongoing research projects, and motivated them to begin own scientific career.

Effect of Tannic Acid on the Transcriptome of the Soil Bacterium Pseudomonas protegens Pf-5

PubMed Central

Lim, Chee Kent; Penesyan, Anahit; Hassan, Karl A.

2013-01-01

Tannins are a diverse group of plant-produced, polyphenolic compounds with metal-chelating and antimicrobial properties that are prevalent in many soils. Using transcriptomics, we determined that tannic acid, a form of hydrolysable tannin, broadly affects the expression of genes involved in iron and zinc homeostases, sulfur metabolism, biofilm formation, motility, and secondary metabolite biosynthesis in the soil- and rhizosphere-inhabiting bacterium Pseudomonas protegens Pf-5. PMID:23435890

Plant identity and shallow soil moisture are primary drivers of stomatal conductance in the savannas of Kruger National Park

PubMed Central

Tobin, Rebecca L.

2018-01-01

Our goal was to describe stomatal conductance (gs) and the site-scale environmental parameters that best predict gs in Kruger National Park (KNP), South Africa. Dominant grass and woody species were measured over two growing seasons in each of four study sites that represented the natural factorial combination of mean annual precipitation [wet (750 mm) or dry (450 mm)] and soil type (clay or sand) found in KNP. A machine-learning (random forest) model was used to describe gs as a function of plant type (species or functional group) and site-level environmental parameters (CO2, season, shortwave radiation, soil type, soil moisture, time of day, vapor pressure deficit and wind speed). The model explained 58% of the variance among 6,850 gs measurements. Species, or plant functional group, and shallow (0–20 cm) soil moisture had the greatest effect on gs. Atmospheric drivers and soil type were less important. When parameterized with three years of observed environmental data, the model estimated mean daytime growing season gs as 68 and 157 mmol m-2 sec-1 for grasses and woody plants, respectively. The model produced here could, for example, be used to estimate gs and evapotranspiration in KNP under varying climate conditions. Results from this field-based study highlight the role of species identity and shallow soil moisture as primary drivers of gs in savanna ecosystems of KNP. PMID:29373605

Abundance and composition dynamics of soil ammonia-oxidizing archaea in an alpine fir forest on the eastern Tibetan Plateau of China.

PubMed

Wang, Ao; Wu, Fu-Zhong; Yang, Wan-Qin; Wu, Zhi-Chao; Wang, Xu-Xi; Tan, Bo

2012-05-01

Real-time qPCR and clone library sequencing targeting amoA genes were used to investigate the seasonal dynamics of an ammonia-oxidizing archaea (AOA) community in an alpine fir forest in western China. AOA were detected at all sampling dates, and there were significant variations in archaeal amoA gene copy numbers (7.63 × 10(5) to 8.35 × 10(8) per gram of dry soil) throughout the nongrowing season. Compared with ammonia-oxidizing bacteria (AOB), the AOA displayed a higher abundance on the majority of sampling dates during the freeze-thaw period. All of the AOA sequences fell within soil and sediment lineages and were affiliated with 7 clusters. Compared with the other clusters, cluster 1 was more sensitive to low temperature and was the dominant group in August. In contrast, cluster 3 dominated the AOA community in winter and probably represents a group of cold-adapted archaea. Redundancy analysis (RDA) revealed that the seasonality of the AOA community was mainly attributed to changes in soil temperature and nutrient availability (e.g., dissolved organic nitrogen and carbon). Our results indicate that AOA exist in frozen soils in the alpine coniferous forest ecosystem of the eastern Tibetan Plateau. Moreover, soil temperature may directly and (or) indirectly affect AOA abundance and composition and may further influence the soil N cycle during the winter.

Soil microbiological properties and enzymatic activities of long-term post-fire recovery in dry and semiarid Aleppo pine (Pinus halepensis M.) forest stands

NASA Astrophysics Data System (ADS)

Hedo, J.; Lucas-Borja, M. E.; Wic, C.; Andrés-Abellán, M.; de Las Heras, J.

2015-02-01

Wildfires affecting forest ecosystems and post-fire silvicultural treatments may cause considerable changes in soil properties. The capacity of different microbial groups to recolonise soil after disturbances is crucial for proper soil functioning. The aim of this work was to investigate some microbial soil properties and enzyme activities in semiarid and dry Aleppo pine (Pinus halepensis M.) forest stands. Different plots affected by a wildfire event 17 years ago without or with post-fire silvicultural treatments 5 years after the fire event were selected. A mature Aleppo pine stand, unaffected by wildfire and not thinned was used as a control. Physicochemical soil properties (soil texture, pH, carbonates, organic matter, electrical conductivity, total N and P), soil enzymes (urease, phosphatase, β-glucosidase and dehydrogenase activities), soil respiration and soil microbial biomass carbon were analysed in the selected forests areas and plots. The main finding was that long time after this fire event produces no differences in the microbiological soil properties and enzyme activities of soil after comparing burned and thinned, burned and not thinned, and mature plots. Moreover, significant site variation was generally seen in soil enzyme activities and microbiological parameters. We conclude that total vegetation recovery normalises post-fire soil microbial parameters, and that wildfire and post-fire silvicultural treatments are not significant factors affecting soil properties after 17 years.

Effect of mine tailing on the spatial variability of soil nematodes from lead pollution in La Union (Spain).

PubMed

Rodríguez Martín, José Antonio; Gutiérrez, Carmen; Escuer, Miguel; García-González, Ma Teresa; Campos-Herrera, Raquel; Aguila, Nancy

2014-03-01

The Cartagena-La Union mining district, exploited since the end of the 3rd century BC, was one of the world's largest lead producers in the 19th century. Although activity ceased in 1991, today mining residues pose a huge pollution problem. This study characterises lead contents (total and DPTA) and other soil parameters (N, P, K, pH, SOM, CaCO3, granulometric fraction, etc.) using multivariate geostatistical methods in relation to nematode diversity. In this work, trophic groups and metabolic footprints of soil nematodes were measured using 193 samples from the mining, natural and agricultural areas in this district. We explored the relationship between soil health and nematode communities. High lead concentrations were quantified: mean 8,500 mg kg(-1) for total and 340 mg kg(-1) for DPTA in this mining area. Although nematode diversity was broad (81 taxa), their diversity, abundance and metabolic footprints significantly reduced in the mining area. Significant differences in the nematode community structure were observed, and the relative abundance of predators was sensitive to mine and agricultural activities, whilst omnivores reduced only in the agricultural area, and bacterial feeders exhibited a differential response to both anthropogenic disturbances. The total abundance of nematodes, trophic groups and c-p groups correlated negatively with soil Pb contents, and a positive relationship was found with SOM and N, P and K contents. Copyright © 2013 Elsevier B.V. All rights reserved.

Soil Carbon Storage in Christmas Tree Farms: Maximizing Ecosystem Management and Sustainability for Carbon Sequestration

NASA Astrophysics Data System (ADS)

Chapman, S. K.; Shaw, R.; Langley, A.

2008-12-01

Management of agroecosystems for the purpose of manipulating soil carbon stocks could be a viable approach for countering rising atmospheric carbon dioxide concentrations, while maximizing sustainability of the agroforestry industry. We investigated the carbon storage potential of Christmas tree farms in the southern Appalachian mountains as a potential model for the impacts of land management on soil carbon. We quantified soil carbon stocks across a gradient of cultivation duration and herbicide management. We compared soil carbon in farms to that in adjacent pastures and native forests that represent a control group to account for variability in other soil-forming factors. We partitioned tree farm soil carbon into fractions delineated by stability, an important determinant of long-term sequestration potential. Soil carbon stocks in the intermediate pool are significantly greater in the tree farms under cultivation for longer periods of time than in the younger tree farms. This pool can be quite large, yet has the ability to repond to biological environmental changes on the centennial time scale. Pasture soil carbon was significantly greater than both forest and tree farm soil carbon, which were not different from each other. These data can help inform land management and soil carbon sequestration strategies.

INVERTEBRATE AND PLANT ECO-SSLS DERIVED FROM PUBLISHED TOXICITY STUDIES

EPA Science Inventory

The U.S. Environmental Protection Agency (USEPA), in collaboration with other federal, state, and industry groups has developed Ecological Soil Screening Levels (Eco-SSLs) for common contaminants found at Superfund sites. The Eco-SSLs were created as a tool to identify soil conta...

A rapid method for soil cement design : Louisiana slope value method : part II : evaluation.

DOT National Transportation Integrated Search

1966-05-01

This report is an evaluation of the recently developed "Louisiana Slope Value Method". : The conclusion drawn are based on data from 637 separate samples representing nearly all major soil groups in Louisiana that are suitable for cement stabilizatio...

Modeling Human Exposure Risk to Nontuberculous Mycobacteria in Central North Carolina

EPA Science Inventory

Nontuberculous mycobacteria (NTM) are a broad group of soil-and water-borne bacteria. Some species are pathogenic and may cause serious infections in the lungs, soft tissues, bones and skin. Infections in humans are associated with environmental exposures to contaminated soil, ae...

Self-organizing feature map (neural networks) as a tool to select the best indicator of road traffic pollution (soil, leaves or bark of Robinia pseudoacacia L.).

PubMed

Samecka-Cymerman, A; Stankiewicz, A; Kolon, K; Kempers, A J

2009-07-01

Concentrations of the elements Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb and Zn were measured in the leaves and bark of Robinia pseudoacacia and the soil in which it grew, in the town of Oleśnica (SW Poland) and at a control site. We selected this town because emission from motor vehicles is practically the only source of air pollution, and it seemed interesting to evaluate its influence on soil and plants. The self-organizing feature map (SOFM) yielded distinct groups of soils and R. pseudoacacia leaves and bark, depending on traffic intensity. Only the map classifying bark samples identified an additional group of highly polluted sites along the main highway from Wrocław to Warszawa. The bark of R. pseudoacacia seems to be a better bioindicator of long-term cumulative traffic pollution in the investigated area, while leaves are good indicators of short-term seasonal accumulation trends.

Microbial community analysis in rice paddy soils irrigated by acid mine drainage contaminated water.

PubMed

Sun, Min; Xiao, Tangfu; Ning, Zengping; Xiao, Enzong; Sun, Weimin

2015-03-01

Five rice paddy soils located in southwest China were selected for geochemical and microbial community analysis. These rice fields were irrigated with river water which was contaminated by Fe-S-rich acid mine drainage. Microbial communities were characterized by high-throughput sequencing, which showed 39 different phyla/groups in these samples. Among these phyla/groups, Proteobacteria was the most abundant phylum in all samples. Chloroflexi, Acidobacteria, Nitrospirae, and Bacteroidetes exhibited higher relative abundances than other phyla. A number of rare and candidate phyla were also detected. Moreover, canonical correspondence analysis suggested that pH, sulfate, and nitrate were significant factors that shaped the microbial community structure. In addition, a wide diversity of Fe- and S-related bacteria, such as GOUTA19, Shewanella, Geobacter, Desulfobacca, Thiobacillus, Desulfobacterium, and Anaeromyxobacter, might be responsible for biogeochemical Fe and S cycles in the tested rice paddy soils. Among the dominant genera, GOUTA19 and Shewanella were seldom detected in rice paddy soils.

Inventory and vertical migration of ¹³⁷Cs in Spanish mainland soils.

PubMed

Legarda, F; Romero, L M; Herranz, M; Barrera, M; Idoeta, R; Valiño, F; Olondo, C; Caro, A

2011-06-01

In this study the total activity of (137)Cs deposited per unit area over the Spanish peninsular territory was analysed using a 150 × 150 km(2) mesh grid, with samples taken from 29 points. The deposited activities ranged between 251 and 6074 Bq/m(2). A linear relationship was obtained between these values and the mean annual rainfall at each sampling point which allowed a map to be drawn, using GIS software, which shows the distribution of total deposited (137)Cs activity across the Spanish mainland. At twelve of these sampling points the vertical migration profile of (137)Cs was obtained. These profiles are separated into two groups with different behaviour, one of which includes clay and loam soils and the other containing sandy soils. For both groups of profiles the parameters of the convective-diffusive model, which describes the vertical migration of (137)Cs in the soil, v (apparent convection velocity) and D (apparent diffusion coefficient) were calculated. Copyright © 2011 Elsevier Ltd. All rights reserved.

Soil pollution in Central district of Saint-Petersburg (Russia)

NASA Astrophysics Data System (ADS)

Terekhina, Natalia; Ufimtseva, Margarita

2015-04-01

Analysis of soil samples of upper horizon for the content of chemical elements (Fe, Mn, Cu, Zn, Pb, Ni, Cr, Co, Cd, Ba, Sr) was carried out by atomic emission with inductively coupled plasma. A relative indicator of soil contamination degree is a concentration coefficient, representing the ratio of metal content in tested soil samples to the local background value of the corresponding element. Total pollution index is calculated by the concentration coefficients, which are greater than 1, taking into account the hazard class of metals (1 class - Zn, Pb ,Cd; 2 - class Cr, Ni, Cu ,Со; 3 class - Fe, Mn, Sr, Ba). Analysis of trace element of urban soils demonstrated mosaic patterns of pollution for Central district. The method of correlation sets constructing and factor analysis revealed three groups of chemical elements having a strong and significant association with each other: Pb-Cu-Cd-Zn-Ba, Ni-Cr-Co, Fe-Mn. Elements of the first group are characterized by high values of concentration coefficient and are the main pollutants - their average content is 3-11 times higher than background values. Strontium does not have strong correlation with the other elements, and its lowest concentration coefficient indicates that the element can not be regarded as a pollutant. The spatial distribution of the total pollution index identified several sources of pollution, the origin of which may be different. The main reason is probably the impact of vehicle emissions, although local pollution of soil is possible (the soils, contaminated during reconstruction of lawns, dumping of construction materials, etc.). Differentiated assessment of database shows that 48% of samples refer to dangerous pollution category, 37% - to moderately dangerous category, 15% - to allowable category. Thus, almost half of the district is characterized as dangerous in terms of soil contamination. Solution of the problem of soil contamination is recommended in three ways: reducing the intensity of vehicular traffic through the historic center of the city, improving the quality of transport emissions, removal of contaminated soil layers in particularly polluted areas and the introduction of clean soil, optimization of verdurization of the urban environment, as a means of reducing the flow of atmospheric pollutants in soil.

Selected trace metals and organic compounds and bioavailability of selected organic compounds in soils, Hackberry Flat, Tillman County, Oklahoma, 1994-95

USGS Publications Warehouse

Becker, M.F.

1997-01-01

In 1995 the Oklahoma Department of Wildlife Conservation acquired a drained wetland in southwest Oklahoma known as Hackberry Flat. Following restoration by Wildlife Conservation the wetland will be used by migratory birds and waterfowl. If naturally occurring trace metals and residual organic compounds from agriculture and industry were present, they may have posed a potential biohazard and were a concern for Wildlife Conservation. The U. S. Geological Survey, in cooperation with Wildlife Conservation and the Oklahoma Geological Survey, examined the soils of Hackberry Flat to determine trace metal concentrations, presence of selected organic compounds, and the bioavailability of selected organic compounds in the soils. The purpose of this report is to present the data that establish the baseline concentrations of selected trace metals and organic compounds in the soils of Hackberry Flat prior to wetland restoration. Sampling and analysis were performed using two approaches. One was to collect soil samples and analyze the composition with standard laboratory practices. The second exposed composite soils samples to organic-free water and a semipermeable membrane device that mimics an organism and then analyzed the device. Ten soil samples were collected in 1994 to be analyzed for trace metals, organochlorine pesticides, and polychlorinated biphenyls. Soil samples tested for bioavailability of selected organic compounds were collected in 1995. Most of the 182 soil samples collected were from the center of every 40-acre quarter-quarter section owned by the Wildlife Conservation. The samples were grouped by geographical area with a maximum of 16 sample sites per group. Concentrations of most selected trace metals measured from soils in Hackberry Flat are within the range of mean concentrations measured in cultivated soils within the United States. Organochlorine pesticides, polychlorinated biphenyls, and polyaromatic hydrocarbons were not found at concentrations above the analytical detection levels and, if present, in the soil samples are at concentrations below the detection level of the analytical method used. Organochlorine pesticides, total polychlorinated biphenyls, and polyaromatic hydrocarbons were not detected in any of the semipermeable membrane devices at the analytical detection levels.

Transformation of humus substances in the long-drained surface-gleyed soddy-podzolic soils under conditions of pronounced microrelief and different agrogenic loads

NASA Astrophysics Data System (ADS)

Ovchinnikova, M. F.

2016-08-01

The transformation of humus substances resulting from artificial drainage of the surface-gleyed soddy-podzolic soils under conditions of pronounced microtopography and different agrogenic loads was studied. The studied soil characteristics included acid-base conditions, the content and group composition of humus, the ratios between the fractions of humus acids, and optical density of humic acids. The features attesting to humus degradation were found in the soils of microdepressions periodically subjected to excessive surface moistening, in the soils of different landforms upon the construction of drainage trenches, and in the plowed non-fertilized soils. The response of humus characteristics to the changes in the ecological situation in the period of active application of agrochemicals for reclamation of the agrotechnogenically disturbed soils was traced. It was shown that the long-term dynamics of the particular parameters of the biological productivity of the soil depend on the hydrological and agrogenic factors, as well as on the weather conditions.

Profile analysis of microbiomes in soils of solonetz complex in the Caspian Lowland

NASA Astrophysics Data System (ADS)

Chernov, T. I.; Lebedeva, M. P.; Tkhakakhova, A. K.; Kutovaya, O. V.

2017-01-01

The taxonomic structure of the microbiota in two associated soils—solonetz on a microhigh and meadow-chestnut soil in a microlow—was studied in the semidesert of the Caspian Lowland. A highthroughput sequencing of the 16S rRNA gene was used for the soil samples from genetic horizons. A considerable reduction in the bacterial diversity was found in the lower horizons of the solonetz and compact solonetzic horizon with a high content of exchangeable sodium. In the meadow-chestnut soil, the microbial diversity little decreased with the depth. In both soils, a portion of archaea from the Thaumarchaeota group also decreased in the deeper horizons. In the soil horizons with the lower total bacterial diversity, a share of proteobacteria of the Enterobacteriaceae, Pseudomonadaceae, and Sphingomonadaceae families became higher. The difference between the structure of the microbial population in the solonetz and meadow- chestnut soil can be first explained by the different water regimes and soil consistence.

Characterization studies and indicated remediation methods for plutonium contaminated soils at the Nevada Test Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Murarik, T.M.; Wenstrand, T.K.; Rogers, L.A.

An initial soil characterization study was conducted to help identify possible remediation methods to remove plutonium from the Nevada Test Site and Tonapah Test Range surface soils. Results from soil samples collected across various isopleths at five sites indicate that the size-fraction distribution patterns of plutonium remain similar to findings from the Nevada Applied Ecology Group (NAEG) (1970's). The plutonium remains in the upper 10--15 cm of soils, as indicated in previous studies. Distribution of fine particles downwind'' of ground zero at each site is suggested. Whether this pattern was established immediately after each explosion or this resulted from post-shotmore » wind movement of deposited material is unclear. Several possible soil treatment scenarios are presented. Removal of plutonium from certain size fractions of the soils would alleviate the sites of much of the plutonium burden. However, the nature of association of plutonium with soil components will determine which remediation methods will most likely succeed.« less

Characterization studies and indicated remediation methods for plutonium contaminated soils at the Nevada Test Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Murarik, T.M.; Wenstrand, T.K.; Rogers, L.A.

An initial soil characterization study was conducted to help identify possible remediation methods to remove plutonium from the Nevada Test Site and Tonapah Test Range surface soils. Results from soil samples collected across various isopleths at five sites indicate that the size-fraction distribution patterns of plutonium remain similar to findings from the Nevada Applied Ecology Group (NAEG) (1970`s). The plutonium remains in the upper 10--15 cm of soils, as indicated in previous studies. Distribution of fine particles ``downwind`` of ground zero at each site is suggested. Whether this pattern was established immediately after each explosion or this resulted from post-shotmore » wind movement of deposited material is unclear. Several possible soil treatment scenarios are presented. Removal of plutonium from certain size fractions of the soils would alleviate the sites of much of the plutonium burden. However, the nature of association of plutonium with soil components will determine which remediation methods will most likely succeed.« less

Stability of immobilization remediation of several amendments on cadmium contaminated soils as affected by simulated soil acidification.

PubMed

Guo, Fuyu; Ding, Changfeng; Zhou, Zhigao; Huang, Gaoxiang; Wang, Xingxiang

2018-06-04

Chemical immobilization is a practical approach to remediate heavy metal contamination in agricultural soils. However, the potential remobilization risks of immobilized metals are a major environmental concern, especially in acid rain zones. In the present study, changes in the immobilization efficiency of several amendments as affected by simulated soil acidification were investigated to evaluate the immobilization remediation stability of several amendments on two cadmium (Cd) contaminated soils. Amendments (hydrated lime, hydroxyapatite and biochar) effectively immobilized Cd, except for organic fertilizer, and their immobilizations were strongly decreased by the simulated soil acidification. The ratio of changes in CaCl 2 -extractable Cd: pH (△CaCl 2 -Cd/△pH) can represent the Cd remobilization risk of different amended soils. Hydroxyapatite and biochar had a stronger durable immobilizing effect than did hydrated lime, particularly in soil with a lower pH buffering capacity, which was further confirmed by the Cd concentration and accumulation in lettuce. These results can be attributed to that hydroxyapatite and biochar transformed greater proportions of exchangeable Cd to other more stable fractions than lime. After 48 weeks of incubation, in soil with a lower pH buffering capacity, the immobilization efficiencies of lime, hydroxyapatite, biochar and organic fertilizer in the deionized water group (pH 6.5) were 71.7%, 52.7%, 38.6% and 23.9%, respectively, and changed to 19.1%, 33.6%, 26.5% and 5.0%, respectively, in the simulated acid rain group (pH 2.5). The present study provides a simple method to preliminarily estimate the immobilization efficiency of amendments and predict their stability in acid rain regions before large-scale field application. In addition, hydrated lime is recommended to be combined with other acid-stable amendments (such as hydroxyapatite or biochar) to remediate heavy metal-contaminated agricultural soils in acid precipitation zones. Copyright © 2018 Elsevier Inc. All rights reserved.

Sensitivity of ecological soil-screening levels for metals to exposure model parameterization and toxicity reference values.

PubMed

Sample, Bradley E; Fairbrother, Anne; Kaiser, Ashley; Law, Sheryl; Adams, Bill

2014-10-01

Ecological soil-screening levels (Eco-SSLs) were developed by the United States Environmental Protection Agency (USEPA) for the purposes of setting conservative soil screening values that can be used to eliminate the need for further ecological assessment for specific analytes at a given site. Ecological soil-screening levels for wildlife represent a simplified dietary exposure model solved in terms of soil concentrations to produce exposure equal to a no-observed-adverse-effect toxicity reference value (TRV). Sensitivity analyses were performed for 6 avian and mammalian model species, and 16 metals/metalloids for which Eco-SSLs have been developed. The relative influence of model parameters was expressed as the absolute value of the range of variation observed in the resulting soil concentration when exposure is equal to the TRV. Rank analysis of variance was used to identify parameters with greatest influence on model output. For both birds and mammals, soil ingestion displayed the broadest overall range (variability), although TRVs consistently had the greatest influence on calculated soil concentrations; bioavailability in food was consistently the least influential parameter, although an important site-specific variable. Relative importance of parameters differed by trophic group. Soil ingestion ranked 2nd for carnivores and herbivores, but was 4th for invertivores. Different patterns were exhibited, depending on which parameter, trophic group, and analyte combination was considered. The approach for TRV selection was also examined in detail, with Cu as the representative analyte. The underlying assumption that generic body-weight-normalized TRVs can be used to derive protective levels for any species is not supported by the data. Whereas the use of site-, species-, and analyte-specific exposure parameters is recommended to reduce variation in exposure estimates (soil protection level), improvement of TRVs is more problematic. © 2014 The Authors. Environmental Toxicology and Chemistry Published by Wiley Periodicals, Inc.

A tiered approach for the human health risk assessment for consumption of vegetables from with cadmium-contaminated land in urban areas.

PubMed

Swartjes, Frank A; Versluijs, Kees W; Otte, Piet F

2013-10-01

Consumption of vegetables that are grown in urban areas takes place worldwide. In developing countries, vegetables are traditionally grown in urban areas for cheap food supply. In developing and developed countries, urban gardening is gaining momentum. A problem that arises with urban gardening is the presence of contaminants in soil, which can be taken up by vegetables. In this study, a scientifically-based and practical procedure has been developed for assessing the human health risks from the consumption of vegetables from cadmium-contaminated land. Starting from a contaminated site, the procedure follows a tiered approach which is laid out as follows. In Tier 0, the plausibility of growing vegetables is investigated. In Tier 1 soil concentrations are compared with the human health-based Critical soil concentration. Tier 2 offers the possibility for a detailed site-specific human health risk assessment in which calculated exposure is compared to the toxicological reference dose. In Tier 3, vegetable concentrations are measured and tested following a standardized measurement protocol. To underpin the derivation of the Critical soil concentrations and to develop a tool for site-specific assessment the determination of the representative concentration in vegetables has been evaluated for a range of vegetables. The core of the procedure is based on Freundlich-type plant-soil relations, with the total soil concentration and the soil properties as variables. When a significant plant-soil relation is lacking for a specific vegetable a geometric mean of BioConcentrationFactors (BCF) is used, which is normalized according to soil properties. Subsequently, a 'conservative' vegetable-group-consumption-rate-weighted BioConcentrationFactor is calculated as basis for the Critical soil concentration (Tier 1). The tool to perform site-specific human health risk assessment (Tier 2) includes the calculation of a 'realistic worst case' site-specific vegetable-group-consumption-rate-weighted BioConcentrationFactor. © 2013 Elsevier Inc. All rights reserved.

Sensitivity of ecological soil-screening levels for metals to exposure model parameterization and toxicity reference values

PubMed Central

Sample, Bradley E; Fairbrother, Anne; Kaiser, Ashley; Law, Sheryl; Adams, Bill

2014-01-01

Ecological soil-screening levels (Eco-SSLs) were developed by the United States Environmental Protection Agency (USEPA) for the purposes of setting conservative soil screening values that can be used to eliminate the need for further ecological assessment for specific analytes at a given site. Ecological soil-screening levels for wildlife represent a simplified dietary exposure model solved in terms of soil concentrations to produce exposure equal to a no-observed-adverse-effect toxicity reference value (TRV). Sensitivity analyses were performed for 6 avian and mammalian model species, and 16 metals/metalloids for which Eco-SSLs have been developed. The relative influence of model parameters was expressed as the absolute value of the range of variation observed in the resulting soil concentration when exposure is equal to the TRV. Rank analysis of variance was used to identify parameters with greatest influence on model output. For both birds and mammals, soil ingestion displayed the broadest overall range (variability), although TRVs consistently had the greatest influence on calculated soil concentrations; bioavailability in food was consistently the least influential parameter, although an important site-specific variable. Relative importance of parameters differed by trophic group. Soil ingestion ranked 2nd for carnivores and herbivores, but was 4th for invertivores. Different patterns were exhibited, depending on which parameter, trophic group, and analyte combination was considered. The approach for TRV selection was also examined in detail, with Cu as the representative analyte. The underlying assumption that generic body-weight–normalized TRVs can be used to derive protective levels for any species is not supported by the data. Whereas the use of site-, species-, and analyte-specific exposure parameters is recommended to reduce variation in exposure estimates (soil protection level), improvement of TRVs is more problematic. Environ Toxicol Chem 2014;33:2386–2398. PMID:24944000

Contrasting the microbiomes from forest rhizosphere and deeper bulk soil from an Amazon rainforest reserve.

PubMed

Fonseca, Jose Pedro; Hoffmann, Luisa; Cabral, Bianca Catarina Azeredo; Dias, Victor Hugo Giordano; Miranda, Marcio Rodrigues; de Azevedo Martins, Allan Cezar; Boschiero, Clarissa; Bastos, Wanderley Rodrigues; Silva, Rosane

2018-02-05

Pristine forest ecosystems provide a unique perspective for the study of plant-associated microbiota since they host a great microbial diversity. Although the Amazon forest is one of the hotspots of biodiversity around the world, few metagenomic studies described its microbial community diversity thus far. Understanding the environmental factors that can cause shifts in microbial profiles is key to improving soil health and biogeochemical cycles. Here we report a taxonomic and functional characterization of the microbiome from the rhizosphere of Brosimum guianense (Snakewood), a native tree, and bulk soil samples from a pristine Brazilian Amazon forest reserve (Cuniã), for the first time by the shotgun approach. We identified several fungi and bacteria taxon significantly enriched in forest rhizosphere compared to bulk soil samples. For archaea, the trend was the opposite, with many archaeal phylum and families being considerably more enriched in bulk soil compared to forest rhizosphere. Several fungal and bacterial decomposers like Postia placenta and Catenulispora acidiphila which help maintain healthy forest ecosystems were found enriched in our samples. Other bacterial species involved in nitrogen (Nitrobacter hamburgensis and Rhodopseudomonas palustris) and carbon cycling (Oligotropha carboxidovorans) were overrepresented in our samples indicating the importance of these metabolic pathways for the Amazon rainforest reserve soil health. Hierarchical clustering based on taxonomic similar microbial profiles grouped the forest rhizosphere samples in a distinct clade separated from bulk soil samples. Principal coordinate analysis of our samples with publicly available metagenomes from the Amazon region showed grouping into specific rhizosphere and bulk soil clusters, further indicating distinct microbial community profiles. In this work, we reported significant shifts in microbial community structure between forest rhizosphere and bulk soil samples from an Amazon forest reserve that are probably caused by more than one environmental factors such as rhizosphere and soil depth. Copyright © 2017 Elsevier B.V. All rights reserved.

The use of crop rotation for mapping soil organic content in farmland

NASA Astrophysics Data System (ADS)

Yang, Lin; Song, Min; Zhu, A.-Xing; Qin, Chengzhi

2017-04-01

Most of the current digital soil mapping uses natural environmental covariates. However, human activities have significantly impacted the development of soil properties since half a century, and therefore become an important factor affecting soil spatial variability. Many researches have done field experiments to show how soil properties are impacted and changed by human activities, however, spatial variation data of human activities as environmental covariates have been rarely used in digital soil mapping. In this paper, we took crop rotation as an example of agricultural activities, and explored its effectiveness in characterizing and mapping the spatial variability of soil. The cultivated area of Xuanzhou city and Langxi County in Anhui Province was chosen as the study area. Three main crop rotations,including double-rice, wheat-rice,and oilseed rape-cotton were observed through field investigation in 2010. The spatial distribution of the three crop rotations in the study area was obtained by multi-phase remote sensing image interpretation using a supervised classification method. One-way analysis of variance (ANOVA) for topsoil organic content in the three crop rotation groups was performed. Factor importance of seven natural environmental covariates, crop rotation, Land use and NDVI were generated by variable importance criterion of Random Forest. Different combinations of environmental covariates were selected according to the importance rankings of environmental covariates for predicting SOC using Random Forest and Soil Landscape Inference Model (SOLIM). A cross validation was generated to evaluated the mapping accuracies. The results showed that there were siginificant differences of topsoil organic content among the three crop rotation groups. The crop rotation is more important than parent material, land use or NDVI according to the importance ranking calculated by Random Forest. In addition, crop rotation improved the mapping accuracy, especially for the flat clutivated area. This study demonstrates the usefulness of human activities in digital soil mapping and thus indicates the necessity for human activity factors in digital soil mapping studies.

Phosphate fertilizer affected rhizospheric soils: speciation of cadmium and phytoremediation by Chlorophytum comosum.

PubMed

Wang, Youbao; Zhu, Chengfeng; Yang, Hongfei; Zhang, Xiaowei

2017-02-01

Experiments were conducted to investigate the effect of phosphate fertilization on chemical speciation of cadmium (Cd) in the rhizospheric soil of Chlorophytum comosum, a potential cadmium hyperaccumulator. The results revealed that when 200 mg kg -1 phosphate was applied into the soil, the Cd contents in the exchangeable fraction (EXC), carbonate-binding fraction (CA), and Fe-Mn oxides-binding fraction (Fe-Mn) were the highest, and the Cd content in the residual fraction (RES) was the lowest. Phosphate fertilization could enhance Cd conversion from RES into CA and weak RES, thereby improving the bioavailability of Cd and enhancing Cd enrichment and adsorption by C. comosum. The total Cd content in the soil was reduced by 10.15 mg kg -1 in the planted group, which was significantly different from the control group (p < 0.01). The highest bioaccumulation coefficient (BC) values in root and aboveground parts appeared when the phosphate rates were 276 and 217 mg kg -1 , whereas the highest translocation factor (TF) occurred with a phosphate rate of 188 mg kg -1 . Phosphate fertilization facilitated phytoremediation of Cd-polluted soil by C. comosum.

Nitrogen amendments have predictable effects on soil microbial communities and processes

NASA Astrophysics Data System (ADS)

Ramirez, K. S.; Craine, J. M.; Fierer, N.

2011-12-01

Ecosystems worldwide are receiving increasing amounts of reactive nitrogen (N) through anthropogenic activities. While there has been much effort devoted to quantifying aboveground impacts of anthropogenic N effects, less work has focused on identifying belowground impacts. Bacteria play critical roles in ecosystem processes and identifying how anthropogenic N impacts bacterial communities may elucidate how critical microbially-mediated ecosystem functions are altered by N additions. In order to connect changes in soil processes to changes in the microbial community, we need to first determine if the changes are consistent across different soil types and ecosystems. We assessed the patterns of N effects across a variety of ecosystems in two ways. First, utilizing long-term experimental N gradients at Cedar Creek LTER, MN and Kellogg Biological Station LTER, MI, we examined the response of microbial communities to anthropogenic N additions. Using high-throughput pyrosequencing techniques we quantified changes in soil microbial communities across the nitrogen gradients. We observed strong directional shifts in community composition at both sites; N fertilization consistently impacted both the phylogenetic and taxonomic structure of soil bacterial community structure in a predictable manner regardless of ecosystem type. For example, at both sites Acidobacteria experienced significant declines as nitrogen increased, while other groups such as Actinobacteria and Bacteroidetes increased in relative abundance. Our results suggest that bacterial communities across these N fertility gradients are structured by either nitrogen and/or soil carbon availability, rather than by shifts in the plant community or soil pH indirectly associated with the elevated nitrogen inputs. Still, this field-work does not incorporate changes in soil processes (e.g. soil respiration) or microbial activity (e.g. microbial biomass and extracellular enzyme activity), or separate N from C effects. To address these factors, we performed a lab experiment, amending 30 soils collected from across North America with inorganic N. From this year-long incubation we obtained soil respiration, microbial biomass, bacterial community and extracellular enzyme activity measurements. Across all soil types we consistently observed a significant decrease in both soil respiration, approximately 10%, and microbial biomass, approximately 35%. Using high-throughput pyrosequencing we identified seven bacterial groups that responded significantly to the N additions, including those observed in our field survey. Together, this work suggests that increases in soil N shifts the functional capabilities of the microbial community and highlights possibly mechanisms behind the observed changes.

Selective Sorption of Dissolved Organic Carbon Compounds by Temperate Soils

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jagadamma, Sindhu; Mayes, Melanie; Phillips, Jana Randolph

Physico-chemical sorption of dissolved organic carbon (DOC) on soil minerals is one of the major processes of organic carbon (OC) stabilization in soils, especially in deeper layers. The attachment of C on soil solids is related to the reactivity of the soil minerals and the chemistry of the sorbate functional groups, but the sorption studies conducted without controlling microbial activity may overestimate the sorption potential of soil. This study was conducted to examine the sorptive characteristics of a diverse functional groups of simple OC compounds (D-glucose, L-alanine, oxalic acid, salicylic acid, and sinapyl alcohol) on temperate climate soil orders (Mollisols,more » Ultisols and Alfisols) with and without biological degradative processes. Equilibrium batch experiments were conducted using 0-100 mg C L-1 at a solid-solution ratio of 1:60 for 48 hrs and the sorption parameters were calculated by Langmuir model fitting. The amount of added compounds that remained in the solution phase was detected by high performance liquid chromatography (HPLC) and total organic C (TOC) analysis. Soil sterilization was performed by -irradiation technique and experiments were repeated to determine the contribution of microbial degradation to apparent sorption. Overall, Ultisols did not show a marked preference for apparent sorption of any of the model compounds, as indicated by a narrower range of maximum sorption capacity (Smax) of 173-527 mg kg soil-1 across compounds. Mollisols exhibited a strong preference for apparent sorption of oxalic acid (Smax of 5290 mg kg soil-1) and sinapyl alcohol (Smax of 2031 mg kg soil-1) over the other compounds. The propensity for sorption of oxalic acid is mainly attributed to the precipitation of insoluble Ca-oxalate due to the calcareous nature of most Mollisol subsoils and its preference for sinapyl alcohol could be linked to the polymerization of this lignin monomer on 2:2 mineral dominated soils. The reactivity of Alfisols to DOC was in between that of Ultisols and Mollisols. HPLC results revealed significantly higher sorption of D-glucose and L-alanine than did TOC results, and duplicate experiments with sterilized soils confirmed that glucose and alanine were mineralized leading to higher apparent sorption values via HPLC. This study demonstrated that three common temperate soil orders experienced differential sorption of simple OC compounds, indicating that sorbate chemistry plays a significant role in the sorptive stabilization of DOC.« less

Copper pollution decreases the resistance of soil microbial community to subsequent dry-rewetting disturbance.

PubMed

Li, Jing; Wang, Jun-Tao; Hu, Hang-Wei; Ma, Yi-Bing; Zhang, Li-Mei; He, Ji-Zheng

2016-01-01

Dry-rewetting (DW) disturbance frequently occurs in soils due to rainfall and irrigation, and the frequency of DW cycles might exert significant influences on soil microbial communities and their mediated functions. However, how microorganisms respond to DW alternations in soils with a history of heavy metal pollution remains largely unknown. Here, soil laboratory microcosms were constructed to explore the impacts of ten DW cycles on the soil microbial communities in two contrasting soils (fluvo-aquic soil and red soil) under three copper concentrations (zero, medium and high). Results showed that the fluctuations of substrate induced respiration (SIR) decreased with repeated cycles of DW alternation. Furthermore, the resistance values of substrate induced respiration (RS-SIR) were highest in non-copper-stressed (zero) soils. Structural equation model (SEM) analysis ascertained that the shifts of bacterial communities determined the changes of RS-SIR in both soils. The rate of bacterial community variance was significantly lower in non-copper-stressed soil compared to the other two copper-stressed (medium and high) soils, which might lead to the higher RS-SIR in the fluvo-aquic soil. As for the red soil, the substantial increase of the dominant group WPS-2 after DW disturbance might result in the low RS-SIR in the high copper-stressed soil. Moreover, in both soils, the bacterial diversity was highest in non-copper-stressed soils. Our results revealed that initial copper stress could decrease the resistance of soil microbial community structure and function to subsequent DW disturbance. Copyright © 2015. Published by Elsevier B.V.

Roles of functional groups of naproxen in its sorption to kaolinite.

PubMed

Yu, Chenglong; Bi, Erping

2015-11-01

The sorption of acidic anti-inflammatory drugs to soils is important for evaluating their fate and transformations in the water-soil environment. However, roles of functional groups of ionisable drugs onto mineral surfaces have not been sufficiently studied. In this study, batch experiments of naproxen (NPX, anti-inflammatory drug) and two kinds of competitors to kaolinite were studied. The Kd of naproxen to kaolinite is 1.30-1.62 L kg(-1). The n-π electron donor-acceptor (n-π EDA) interaction between diaromatic ring of naproxen (π-electron acceptors) and the siloxane oxygens (n-donors) of kaolinite is the dominant sorption mechanism. The carboxyl group of naproxen can contribute to the overall sorption. A conception model was put forward to elucidate to sorption mechanisms, in which the contribution of n-π EDA and hydrogen bond to overall sorption was quantified. These sorption mechanisms can be helpful for estimating the fate and mobility of acid pharmaceuticals in soil-water environment. Copyright © 2015 Elsevier Ltd. All rights reserved.

Biogeochemical drivers of microbial community convergence across actively retreating glaciers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Castle, Sarah C.; Nemergut, Diana R.; Grandy, A. Stuart

The ecological processes that influence biogeographical patterns of microorganisms are actively debated. To investigate how such patterns emerge during ecosystem succession, we examined the biogeochemical drivers of bacterial community assembly in soils over two environmentally distinct, recently deglaciated chronosequences separated by a distance of more than 1,300 kilometers. Our results show that despite different geographic, climatic, and soil chemical and physical characteristics at the two sites, soil bacterial community structure and decomposer function converged during plant succession. In a comparative analysis, we found that microbial communities in early succession soils were compositionally distinct from a group of diverse, mature forestmore » soils, but that the differences between successional soils and mature soils decreased from early to late stages of succession. Differences in bacterial community composition across glacial sites were largely explained by pH. However, successional patterns and community convergence across sites were more consistently related to soil organic carbon and organic matter chemistry, which appeared to be tightly coupled with bacterial community structure across both young and mature soils.« less

Soil crusts to warm the planet

NASA Astrophysics Data System (ADS)

Garcia-Pichel, Ferran; Couradeau, Estelle; Karaoz, Ulas; da Rocha Ulisses, Nunes; Lim Hsiao, Chiem; Northen, Trent; Brodie, Eoin

2016-04-01

Soil surface temperature, an important driver of terrestrial biogeochemical processes, depends strongly on soil albedo, which can be significantly modified by factors such as plant cover. In sparsely vegetated lands, the soil surface can also be colonized by photosynthetic microbes that build biocrust communities. We used concurrent physical, biochemical and microbiological analyses to show that mature biocrusts can increase surface soil temperature by as much as 10 °C through the accumulation of large quantities of a secondary metabolite, the microbial sunscreen scytonemin, produced by a group of late-successional cyanobacteria. Scytonemin accumulation decreases soil albedo significantly. Such localized warming had apparent and immediate consequences for the crust soil microbiome, inducing the replacement of thermosensitive bacterial species with more thermotolerant forms. These results reveal that not only vegetation but also microorganisms are a factor in modifying terrestrial albedo, potentially impacting biosphere feedbacks on past and future climate, and call for a direct assessment of such effects at larger scales. Based on estimates of the global biomass of cyanobacteria in soil biocrusts, one can easily calculate that there must currently exist about 15 million metric tons of scytonemin at work, warming soil surfaces worldwide

Soil Water Retention as Indicator for Soil Physical Quality - Examples from Two SoilTrEC European Critical Zone Observatories

NASA Astrophysics Data System (ADS)

Rousseva, Svetla; Kercheva, Milena; Shishkov, Toma; Dimitrov, Emil; Nenov, Martin; Lair, Georg J.; Moraetis, Daniel

2014-05-01

Soil water retention is of primary importance for majority of soil functions. The characteristics derived from Soil Water Retention Curve (SWRC) are directly related to soil structure and soil water regime and can be used as indicators for soil physical quality. The aim of this study is to present some parameters and relationships based on the SWRC data from the soil profiles characterising the European SoilTrEC Critical Zone Observatories Fuchsenbigl and Koiliaris. The studied soils are representative for highly productive soils managed as arable land in the frame of soil formation chronosequence at "Marchfeld" (Fuchsenbigl CZO), Austria and heavily impacted soils during centuries through intensive grazing and farming, under severe risk of desertification in context of climatic and lithological gradient at Koiliaris, Crete, Greece. Soil water retention at pF ≤ 2.52 was determined using the undisturbed soil cores (100 cm3 and 50 cm3) by a suction plate method. Water retention at pF = 4.2 was determined by a membrane press method and at pF ≥ 5.6 - by adsorption of water vapour at controlled relative humidity, both using ground soil samples. The soil physical quality parameter (S-parameter) was defined as the slope of the water retention curve at its inflection point (Dexter, 2006), determined with the obtained parameters of van Genuhten (1980) water retention equation. The S-parameter values were categorised to assess soil physical quality as follows: S < 0.020 very poor, 0.020 ≤ S < 0.035 poor, 0.035 ≤ S < 0.050 good, S ≥ 0.050 very good (Dexter, 2004). The results showed that most of the studied topsoil horizons have good physical quality according to both the S-parameter and the Plant-Available Water content (PAW), with the exception of the soils from croplands at CZO Fuxenbigl (F4, F5) which are with poor soil structure. The link between the S-parameter and the indicator of soil structure stability (water stable soil aggregates with size 1-3 mm) is not well defined. The scattering is due to high values of S in subsoil, which does not always coincide with favourable physical properties, as it can be seen from the relationship with the PAW content. It was found that values of S ≥ 0.05 correspond to PAW > 20 % vol. in the topsoil horizons. The high values of S in subsoil horizons are due to the low PAW and restrict the application of the S categories in these cases. Well defined links are found between the PAW content and the S-parameter when the data from the topsoil horizons are grouped in 2 groups according to the ratio between air-filled pores (at pF 2.52) and plant available water: <2 and ≥ 2. The authors acknowledge gratefully the European Commission Research Directorate-General for funding the SoilTrEC project (Contract No 244118) under its 7th Framework Programme.