The effect of the halophytic shrub Lycium ruthenium (Mutt) on selected soil properties of a desert ecosystem in central Iran

Treesearch

Gholam Ali Jalali; Hossein Akbarian; Charles Rhoades; Hamed Yousefzadeh

2012-01-01

We compared soil properties beneath naturally-occurring patches of Lycium ruthenicum Murray (fam. Solanaceae) to evaluate the shrub’s potential to improve the fertility of saline soils. Soil pH, total nitrogen and carbon and extractable potassium, magnesium and phosphorus were respectively significantly higher in the A and B horizons of Lycium shrub patches...

Biological soil crust and disturbance controls on surface hydrology in a semi-arid ecosystem

USGS Publications Warehouse

Faist, Akasha M; Herrick, Jeffrey E.; Belnap, Jayne; Van Zee, Justin W; Barger, Nichole N

2017-01-01

Biological soil crust communities (biocrusts) play an important role in surface hydrologic processes in dryland ecosystems, and these processes may then be dramatically altered with soil surface disturbance. In this study, we examined biocrust hydrologic responses to disturbance at different developmental stages on sandy soils on the Colorado Plateau. Our results showed that all disturbance (trampling, scalping and trampling+scalping) of the early successional light cyanobacterial biocrusts generally reduced runoff. In contrast, trampling well-developed dark-cyano-lichen biocrusts increased runoff and sediment loss relative to intact controls. Scalping did not increase runoff, implying that soil aggregate structure was important to the infiltration process. Well-developed, intact dark biocrusts generally had lower runoff, low sediment loss, and highest aggregate stability whereas the less-developed light biocrusts were highest in runoff and sediment loss when compared to the controls. These results suggest the importance of maintaining the well-developed dark biocrusts, as they are beneficial for lowering runoff and reducing soil loss and redistribution on the landscape. These data also suggest that upslope patches of light biocrust may either support water transport to downslope vegetation patches or alternatively this runoff may place dark biocrust patches at risk of disruption and loss, given that light patches increase runoff and thus soil erosion potential.

Effects of the duration and inorganic nitrogen composition of a nutrient-rich patch on soil exploration by the roots of Lolium perenne in a heterogeneous environment.

PubMed

Nakamura, Ryoji; Kachi, N; Suzuki, J-I

2010-05-01

We investigated the growth of and soil exploration by Lolium perenne under a heterogeneous environment before its roots reached a nutrient-rich patch. Temporal changes in the distribution of inorganic nitrogen, i.e., NO(3)(-)-N and NH(4)(+)-N, in the heterogeneous environment during the experimental period were also examined. The results showed that roots randomly explored soil, irrespective of the patchy distribution of inorganic nitrogen and differences in the chemical composition of inorganic nitrogen distribution between heterogeneous and homogeneous environments. We have also elucidated the potential effects of patch duration and inorganic nitrogen distribution on soil exploration by roots and thus on plant growth.

Plant and Root Growth Responses to Heterogeneous Supplies of Soil Water in Two Coastal Shrubs of California.

NASA Astrophysics Data System (ADS)

Cole, S.; Mahall, B. E.

2007-05-01

Much effort has been focused on identifying plant and root growth responses to heterogeneous supplies of soil nutrients. However, in many circumstances, soil water may limit plant growth and it too can have a patchy distribution. In our research we asked: 1) What is the ecological significance of soil moisture heterogeneity to plant growth in a California coastal dune habitat? 2) How does growth of whole plants and roots respond to soil moisture heterogeneity? and 3) Can roots of these species sense and grow towards moisture-rich areas (hydrotropism) in a natural medium? To address these questions: we conducted comparative field studies of water relations and growth of Artemisia californica and Eriogonum parvifolium; we performed a growth rate study of roots and plants in experimental pots with either patchy or homogeneous distributions of soil water; and we analyzed individual root growth in sand-filled observation chambers in response to moisture-rich patches and resultant soil water gradients. In the field, correlations between daily photosynthetic rates, active leaf display and predawn xylem pressure potentials (ΨPD) indicated that access to water limited growth in A. californica and E. parvifolium. These species, common in habit and habitat, differed in their ability to access water with E. parvifolium having overall higher ΨPD than A. californica (repeated measures ANOVA, P < 0.01). Our growth rate study revealed that patchy supplies of water did not reduce the relative growth rate or average size of E. parvifolium (two-tailed t-tests, P > 0.25). It appears that modified partitioning of growth both at the whole plant and root system level permitted E. parvifolium to maintain growth in patchy soil water conditions. We found that E. parvifolium increased allocation to roots and proliferated in moisture-rich patches in the patchy soil water treatment. Root length density and the proportion of root mass present in the patch was 20- to >100-fold greater in and near the moisture-rich patch than in a comparable but drier soil location (one-tailed matched pairs t-tests, P ≤ 0.05). While root hydrotropism could be a means by which plants are able to locate moisture-rich patches, from our chamber studies we found no compelling evidence for hydrotropic root behavior in seedlings of these two dune shrubs and suggest that roots instead may encounter patches of soil water serendipitously.

Soil, Seeds, and the Pumpkin Patch!

ERIC Educational Resources Information Center

Phillips, Marianne; Vowell, Julie

2013-01-01

"Soil, Seeds, and the Pumpkin Patch!" is an integrated unit designed to provide elementary school teachers with ideas for using hands-on activities, fostering inquiry and valuable discussion, and using technology as a learning tool. This unit integrates science with language arts, mathematics, literature, and technology. During this unit, students…

Effect of organic amendment and cultural practice on large patch occurrence and soil microbial community

USDA-ARS?s Scientific Manuscript database

Organic amendments may suppress soilborne pathogens by stimulating soil microbes. However, little information is available about the effects of organic amendments and cultural practices on suppressing large patch caused by Rhizoctonia solani Kühn on zoysiagrass (Zoysia japonica Steud.) associated wi...

Spatial heterogeneity of plant-soil feedback affects root interactions and interspecific competition.

PubMed

Hendriks, Marloes; Ravenek, Janneke M; Smit-Tiekstra, Annemiek E; van der Paauw, Jan Willem; de Caluwe, Hannie; van der Putten, Wim H; de Kroon, Hans; Mommer, Liesje

2015-08-01

Plant-soil feedback is receiving increasing interest as a factor influencing plant competition and species coexistence in grasslands. However, we do not know how spatial distribution of plant-soil feedback affects plant below-ground interactions. We investigated the way in which spatial heterogeneity of soil biota affects competitive interactions in grassland plant species. We performed a pairwise competition experiment combined with heterogeneous distribution of soil biota using four grassland plant species and their soil biota. Patches were applied as quadrants of 'own' and 'foreign' soils from all plant species in all pairwise combinations. To evaluate interspecific root responses, species-specific root biomass was quantified using real-time PCR. All plant species suffered negative soil feedback, but strength was species-specific, reflected by a decrease in root growth in own compared with foreign soil. Reduction in root growth in own patches by the superior plant competitor provided opportunities for inferior competitors to increase root biomass in these patches. These patterns did not cascade into above-ground effects during our experiment. We show that root distributions can be determined by spatial heterogeneity of soil biota, affecting plant below-ground competitive interactions. Thus, spatial heterogeneity of soil biota may contribute to plant species coexistence in species-rich grasslands. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Organic Nitrogen-Driven Stimulation of Arbuscular Mycorrhizal Fungal Hyphae Correlates with Abundance of Ammonia Oxidizers

PubMed Central

Bukovská, Petra; Gryndler, Milan; Gryndlerová, Hana; Püschel, David; Jansa, Jan

2016-01-01

Large fraction of mineral nutrients in natural soil environments is recycled from complex and heterogeneously distributed organic sources. These sources are explored by both roots and associated mycorrhizal fungi. However, the mechanisms behind the responses of arbuscular mycorrhizal (AM) hyphal networks to soil organic patches of different qualities remain little understood. Therefore, we conducted a multiple-choice experiment examining hyphal responses to different soil patches within the root-free zone by two AM fungal species (Rhizophagus irregularis and Claroideoglomus claroideum) associated with Medicago truncatula, a legume forming nitrogen-fixing root nodules. Hyphal colonization of the patches was assessed microscopically and by quantitative real-time PCR (qPCR) using AM taxon-specific markers, and the prokaryotic and fungal communities in the patches (pooled per organic amendment treatment) were profiled by 454-amplicon sequencing. Specific qPCR markers were then designed and used to quantify the abundance of prokaryotic taxa showing the strongest correlation with the pattern of AM hyphal proliferation in the organic patches as per the 454-sequencing. The hyphal density of both AM fungi increased due to nitrogen (N)-containing organic amendments (i.e., chitin, DNA, albumin, and clover biomass), while no responses as compared to the non-amended soil patch were recorded for cellulose, phytate, or inorganic phosphate amendments. Abundances of several prokaryotes, including Nitrosospira sp. (an ammonium oxidizer) and an unknown prokaryote with affiliation to Acanthamoeba endosymbiont, which were frequently recorded in the 454-sequencing profiles, correlated positively with the hyphal responses of R. irregularis to the soil amendments. Strong correlation between abundance of these two prokaryotes and the hyphal responses to organic soil amendments by both AM fungi was then confirmed by qPCR analyses using all individual replicate patch samples. Further research is warranted to ascertain the causality of these correlations and particularly which direct roles (if any) do these prokaryotes play in the observed AM hyphal responses to organic N amendment, organic N utilization by the AM fungus and its (N-unlimited) host plant. Further, possible trophic dependencies between the different players in the AM hyphosphere needs to be elucidated upon decomposing the organic N sources. PMID:27242732

Organic Nitrogen-Driven Stimulation of Arbuscular Mycorrhizal Fungal Hyphae Correlates with Abundance of Ammonia Oxidizers.

PubMed

Bukovská, Petra; Gryndler, Milan; Gryndlerová, Hana; Püschel, David; Jansa, Jan

2016-01-01

Large fraction of mineral nutrients in natural soil environments is recycled from complex and heterogeneously distributed organic sources. These sources are explored by both roots and associated mycorrhizal fungi. However, the mechanisms behind the responses of arbuscular mycorrhizal (AM) hyphal networks to soil organic patches of different qualities remain little understood. Therefore, we conducted a multiple-choice experiment examining hyphal responses to different soil patches within the root-free zone by two AM fungal species (Rhizophagus irregularis and Claroideoglomus claroideum) associated with Medicago truncatula, a legume forming nitrogen-fixing root nodules. Hyphal colonization of the patches was assessed microscopically and by quantitative real-time PCR (qPCR) using AM taxon-specific markers, and the prokaryotic and fungal communities in the patches (pooled per organic amendment treatment) were profiled by 454-amplicon sequencing. Specific qPCR markers were then designed and used to quantify the abundance of prokaryotic taxa showing the strongest correlation with the pattern of AM hyphal proliferation in the organic patches as per the 454-sequencing. The hyphal density of both AM fungi increased due to nitrogen (N)-containing organic amendments (i.e., chitin, DNA, albumin, and clover biomass), while no responses as compared to the non-amended soil patch were recorded for cellulose, phytate, or inorganic phosphate amendments. Abundances of several prokaryotes, including Nitrosospira sp. (an ammonium oxidizer) and an unknown prokaryote with affiliation to Acanthamoeba endosymbiont, which were frequently recorded in the 454-sequencing profiles, correlated positively with the hyphal responses of R. irregularis to the soil amendments. Strong correlation between abundance of these two prokaryotes and the hyphal responses to organic soil amendments by both AM fungi was then confirmed by qPCR analyses using all individual replicate patch samples. Further research is warranted to ascertain the causality of these correlations and particularly which direct roles (if any) do these prokaryotes play in the observed AM hyphal responses to organic N amendment, organic N utilization by the AM fungus and its (N-unlimited) host plant. Further, possible trophic dependencies between the different players in the AM hyphosphere needs to be elucidated upon decomposing the organic N sources.

Impacts of urbanization and landscape patterns on the earthworm communities in residential areas in Beijing.

PubMed

Xie, Tian; Wang, Meie; Chen, Weiping; Uwizeyimana, Herman

2018-06-01

Earthworms play an important role in soil processes and functions. However, few studies have focused on their community patterns in perturbed systems, especially in an urban environment with a high turnover rate of land cover. In this study, we collected and identified the earthworms in the residential areas in metropolitan Beijing. We further investigated the effects of urban soil properties, urbanization and landscape patterns on the earthworm communities. The results showed that both the abundance and biomass of earthworms in residential areas in metropolitan was relatively low. The abundance of earthworms was negatively correlated with soil organic carbon (SOC) in this study. Soil moisture and pH could be considered as the most important edaphic variables that affected earthworm communities. The construction age of residential areas significantly influenced the earthworm abundance. Moreover, the earthworm community composition responded differently to urban landscape features at different scales. The percentage of impervious and green space surface, the amount of landscape cover types, patch density and landscape fragment significantly affected the earthworm assemblages. Our result discovered that the edaphic properties, urbanization as well as landscape patterns might be the potential factors that influenced the earthworm community patterns. Copyright © 2018 Elsevier B.V. All rights reserved.

Soil Microbial Activity Responses to Fire in a Semi-arid Savannah Ecosystem Pre- and Post-Monsoon Season

NASA Astrophysics Data System (ADS)

Jimenez, J. R.; Raub, H. D.; Jong, E. L.; Muscarella, C. R.; Smith, W. K.; Gallery, R. E.

2017-12-01

Extracellular enzyme activities (EEA) of soil microorganisms can act as important proxies for nutrient limitation and turnover in soil and provide insight into the biochemical requirements of microbes in terrestrial ecosystems. In semi-arid ecosystems, microbial activity is influenced by topography, disturbances such as fire, and seasonality from monsoon rains. Previous studies from forest ecosystems show that microbial communities shift to similar compositions after severe fires despite different initial conditions. In semi-arid ecosystems with high spatial heterogeniety, we ask does fire lead to patch intensification or patch homogenization and how do monsoon rains influence the successional trajectories of microbial responses? We analyzed microbial activity and soil biogeochemistry throughout the monsoon season in paired burned and unburned sites in the Santa Rita Experimental Range, AZ. Surface soil (5cm) from bare-ground patches, bole, canopy drip line, and nearby grass patches for 5 mesquite trees per site allowed tests of spatiotemporal responses to fire and monsoon rain. Microbial activity was low during the pre-monsoon season and did not differ between the burned and unburned sites. We found greater activity near mesquite trees that reflects soil water and nutrient availability. Fire increased soil alkalinity, though soils near mesquite trees were less affected. Soil water content was significantly higher in the burned sites post-monsoon, potentially reflecting greater hydrophobicity of burned soils. Considering the effects of fire in these semi-arid ecosystems is especially important in the context of the projected changing climate regime in this region. Assessing microbial community recovery pre-, during, and post-monsoon is important for testing predictions about whether successional pathways post-fire lead to recovery or novel trajectories of communities and ecosystem function.

Imprint of oaks on nitrogen availability and δ15N in California grassland-savanna: A case of enhanced N inputs?

USGS Publications Warehouse

Perakis, S.S.; Kellogg, C.H.

2007-01-01

Woody vegetation is distributed patchily in many arid and semi-arid ecosystems, where it is often associated with elevated nitrogen (N) pools and availability in islands of fertility. We measured N availability and δ15N in paired blue-oak versus annual grass dominated patches to characterize the causes and consequences of spatial variation in N dynamics of grassland-savanna in Sequoia-Kings Canyon National Park. We found significantly greater surface soil N pools (0–20 cm) in oak patches compared to adjacent grass areas across a 700 m elevation gradient from foothills to the savanna-forest boundary. N accumulation under oaks was associated with a 0.6‰ depletion in soil δ15N relative to grass patches. Results from a simple δ15N mass balance simulation model, constrained by surface soil N and δ15N measured in the field, suggest that the development of islands of N fertility under oaks can be traced primarily to enhanced N inputs. Net N mineralization and percent nitrification in laboratory incubations were consistently higher under oaks across a range of experimental soil moisture regimes, suggesting a scenario whereby greater N inputs to oak patches result in net N accumulation and enhanced N cycling, with a potential for greater nitrate loss as well. N concentrations of three common herbaceous annual plants were nearly 50% greater under oak than in adjacent grass patches, with community composition shifted towards more N-demanding species under oaks. We find that oaks imprint distinct N-rich islands of fertility that foster local feedback between soil N cycling, plant N uptake, and herbaceous community composition. Such patch-scale differences in N inputs and plant–soil interactions increase biogeochemical heterogeneity in grassland-savanna ecosystems and may shape watershed-level responses to chronic N deposition.

An Assessment of Soil Disturbance from Five Harvesting Intensities

Treesearch

John Klepac; Stephen E. Reutebuch; Robert B. Rummer

1999-01-01

Surface soil disturbance was compared among a commercial thinning, group selection, patch cut, 2-age, and clearcut. The thinning, group selection and patch cut units had significantly higher percentages of undisturbed area. The 2-age unit had a significantly higher percentage of area disturbed with litter in place. The clearcut unit had a significantly higher...

The influence of changes in land use and landscape patterns on soil erosion in a watershed.

PubMed

Zhang, Shanghong; Fan, Weiwei; Li, Yueqiang; Yi, Yujun

2017-01-01

It is very important to have a good understanding of the relation between soil erosion and landscape patterns so that soil and water conservation in river basins can be optimized. In this study, this relationship was explored, using the Liusha River Watershed, China, as a case study. A distributed water and sediment model based on the Soil and Water Assessment Tool (SWAT) was developed to simulate soil erosion from different land use types in each sub-basin of the Liusha River Watershed. Observed runoff and sediment data from 1985 to 2005 and land use maps from 1986, 1995, and 2000 were used to calibrate and validate the model. The erosion modulus for each sub-basin was calculated from SWAT model results using the different land use maps and 12 landscape indices were chosen and calculated to describe the land use in each sub-basin for the different years. The variations in instead of the absolute amounts of the erosion modulus and the landscape indices for each sub-basin were used as the dependent and independent variables, respectively, for the regression equations derived from multiple linear regression. The results indicated that the variations in the erosion modulus were closely related to changes in the large patch index, patch cohesion index, modified Simpson's evenness index, and the aggregation index. From the regression equation and the corresponding landscape indices, it was found that watershed erosion can be reduced by decreasing the physical connectivity between patches, improving the evenness of the landscape patch types, enriching landscape types, and enhancing the degree of aggregation between the landscape patches. These findings will be useful for water and soil conservation and for optimizing the management of watershed landscapes. Copyright © 2016 Elsevier B.V. All rights reserved.

The rate of aucubin, a secondary metabolite in Plantago lanceolata and potential nitrification inhibitor, needed to reduce ruminant urine patch nitrous oxide emissions

NASA Astrophysics Data System (ADS)

Gardiner, C. A.; Clough, T.; Cameron, K.; Di, H.; Edwards, G. R.

2017-12-01

Nitrous oxide (N2O) losses derived from grazing ruminant livestock urine patches account for 40% of global N2O emissions. It has been shown that Plantago lanceolata, an herb species used in grazed pastures, contains an active secondary metabolite (aucubin) that has the potential to be excreted by grazing ruminants and inhibit nitrification in the urine patch, a key step in soil N2O production. However, the urinary excretion rate of aucubin needed to significantly reduce urine patch N2O emissions remains unknown. Aucubin was dissolved in bovine urine at three rates (47, 243, and 486 kg ha-1), based on rates used in Dietz et al. (2013) and the calculated highest potential aucubin application rate, from Gardiner et al. (2017). A control, along with a urine treatment and the three aucubin treatments (all urine applied at 700 kg N ha-1), was applied to 20 g soil and incubated in the laboratory for 35 d. Soils were monitored for surface pH, inorganic N concentration (NH4+/NO3-), and gas (N2O and CO2) fluxes. This experiment is currently underway and the results will be presented at the conference. Dietz M, Machill S, Hoffmann H, Schmidtke K 2013. Inhibitory effects of Plantago lanceolata L. on soil N mineralization. Plant and Soil 368: 445-458. Gardiner CA, Clough TJ, Cameron KC, Di HJ, Edwards GR, de Klein CAM 2017. The potential inhibitory effects of Plantago lanceolata and its active secondary metabolite aucubin on soil nitrification and nitrous oxide emissions under ruminant urine patch conditions. Manuscript submitted for publication.

Behavioral response and kinetics of terrestrial atrazine exposure in American toads (bufo americanus)

USGS Publications Warehouse

Storrs, Mendez S.I.; Tillitt, D.E.; Rittenhouse, T.A.G.; Semlitsch, R.D.

2009-01-01

Amphibians in terrestrial environments obtain water through a highly vascularized pelvic patch of skin. Chemicals can also be exchanged across this patch. Atrazine (ATZ), a widespread herbicide, continues to be a concern among amphibian ecologists based on potential exposure and toxicity. Few studies have examined its impact on the terrestrial juvenile or adult stages of toads. In the current study, we asked the following questions: (1) Will juvenile American toads (Bufo americanus) avoid soils contaminated with ATZ? (2) Can they absorb ATZ across the pelvic patch? (3) If so, how is it distributed among the organs and eventually eliminated? We conducted a behavioral choice test between control soil and soil dosed with ecologically relevant concentrations of ATZ. In addition, we examined the uptake, distribution, and elimination of water dosed with 14C-labeled ATZ. Our data demonstrate that toads do not avoid ATZ-laden soils. ATZ crossed the pelvic patch rapidly and reached an apparent equilibrium within 5 h. The majority of the radiolabeled ATZ ended up in the intestines, whereas the greatest concentrations were observed in the gall bladder. Thus, exposure of adult life stages of amphibians through direct uptake of ATZ from soils and runoff water should be considered in risk evaluations. ?? 2009 Springer Science+Business Media, LLC.

Shallow groundwater systems in a polar desert, McMurdo Dry Valleys, Antarctica

NASA Astrophysics Data System (ADS)

Gooseff, Michael N.; Barrett, John E.; Levy, Joseph S.

2013-02-01

The McMurdo Dry Valleys (MDVs), Antarctica, exist in a hyperarid polar desert, underlain by deep permafrost. With an annual mean air temperature of -18 °C, the MDVs receive <10 cm snow-water equivalent each year, collecting in leeward patches across the landscape. The landscape is dominated by expansive ice-free areas of exposed soils, mountain glaciers, permanently ice-covered lakes, and stream channels. An active layer of seasonally thawed soil and sediment extends to less than 1 m from the surface. Despite the cold and low precipitation, liquid water is generated on glaciers and in snow patches during the austral summer, infiltrating the active layer. Across the MDVs, groundwater is generally confined to shallow depths and often in unsaturated conditions. The current understanding and the biogeochemical/ecological significance of four types of shallow groundwater features in the MDVs are reviewed: local soil-moisture patches that result from snow-patch melt, water tracks, wetted margins of streams and lakes, and hyporheic zones of streams. In general, each of these features enhances the movement of solutes across the landscape and generates soil conditions suitable for microbial and invertebrate communities.

Silica-Rich Soil in Gusev Crater

NASA Technical Reports Server (NTRS)

2007-01-01

NASA's Mars Exploration Rover Spirit has found a patch of bright-toned soil so rich in silica that scientists propose water must have been involved in concentrating it.

The silica-rich patch, informally named 'Gertrude Weise' after a player in the All-American Girls Professional Baseball League, was exposed when Spirit drove over it during the 1,150th Martian day, or sol, of Spirit's Mars surface mission (March 29, 2007). One of Spirit's six wheels no longer rotates, so it leaves a deep track as it drags through soil. Most patches of disturbed, bright soil that Spirit had investigated previously are rich in sulfur, but this one has very little sulfur and is about 90 percent silica.

Spirit's panoramic camera imaged the bright patch through various filters on Sol 1,158 (April 6). This approximately true-color image combines images taken through three different filters. The track of disturbed soil is roughly 20 centimeters (8 inches) wide.

Spirit's miniature thermal emission spectrometer, which can assess a target's mineral composition from a distance, examined the Gertrude Weise patch on Sol 1,172 (April 20). The indications it found for silica in the overturned soil prompted a decision to drive Spirit close enough to touch the soil with the alpha particle X-ray spectrometer, a chemical analyzer at the end of Spirit's robotic arm. The alpha particle X-ray spectrometer collected data about this target on sols 1,189 and 1,190 (May 8 and May 9) and produced the finding of approximately 90 percent silica.

Silica is silicon dioxide. On Earth, it commonly occurs as the crystalline mineral quartz and is the main ingredient in window glass. The Martian silica at Gertrude Weise is non-crystalline, with no detectable quartz.

In most cases, water is required to produce such a concentrated deposit of silica, according to members of the rover science team. One possible origin for the silica could have been interaction of soil with acidic steam produced by volcanic activity. Another could have been from water in a hot spring environment.

Ecohydrological controls on soil moisture and hydraulic conductivity within a pinyon‐juniper woodland

USGS Publications Warehouse

Lebron, I.; Madsen, M.D.; Chandler, D.G.; Robinson, D.A.; Wendroth, O.; Belnap, J.

2007-01-01

The impact of pinyon‐juniper woodland encroachment on rangeland ecosystems is often associated with a reduction of streamflow and recharge and an increase in soil erosion. The objective of this study is to investigate vegetational control on seasonal soil hydrologic properties along a 15‐m transect in pinyon‐juniper woodland with biocrust. We demonstrate that the juniper tree controls soil water content (SWC) patterns directly under the canopy via interception, and beyond the canopy via shading in a preferred orientation, opposite to the prevailing wind direction. The juniper also controls the SWC and unsaturated hydraulic conductivity measured close to water saturation (K(h)) under the canopy by the creation of soil water repellency due to needle drop. We use this information to refine the hydrologic functional unit (HFU) concept into three interacting hydrologic units: canopy patches, intercanopy patches, and a transitional unit formed by intercanopy patches in the rain shadow of the juniper tree. Spatial autoregressive state‐space models show the close relationship between K(h) close to soil water saturation and SWC at medium and low levels, integrating a number of influences on hydraulic conductivity.

Novel KCNQ2 channel activators discovered using fluorescence-based and automated patch-clamp-based high-throughput screening techniques

PubMed Central

Yue, Jin-feng; Qiao, Guan-hua; Liu, Ni; Nan, Fa-jun; Gao, Zhao-bing

2016-01-01

Aim: To establish an improved, high-throughput screening techniques for identifying novel KCNQ2 channel activators. Methods: KCNQ2 channels were stably expressed in CHO cells (KCNQ2 cells). Thallium flux assay was used for primary screening, and 384-well automated patch-clamp IonWorks Barracuda was used for hit validation. Two validated activators were characterized using a conventional patch-clamp recording technique. Results: From a collection of 80 000 compounds, the primary screening revealed a total of 565 compounds that potentiated the fluorescence signals in thallium flux assay by more than 150%. When the 565 hits were examined in IonWorks Barracuda, 38 compounds significantly enhanced the outward currents recorded in KCNQ2 cells, and were confirmed as KCNQ2 activators. In the conventional patch-clamp recordings, two validated activators ZG1732 and ZG2083 enhanced KCNQ2 currents with EC50 values of 1.04±0.18 μmol/L and 1.37±0.06 μmol/L, respectively. Conclusion: The combination of thallium flux assay and IonWorks Barracuda assay is an efficient high-throughput screening (HTS) route for discovering KCNQ2 activators. PMID:26725738

Land cover heterogeneity and soil respiration in a west Greenland tundra landscape

NASA Astrophysics Data System (ADS)

Bradley-Cook, J. I.; Burzynski, A.; Hammond, C. R.; Virginia, R. A.

2011-12-01

Multiple direct and indirect pathways underlie the association between land cover classification, temperature and soil respiration. Temperature is a main control of the biological processes that constitute soil respiration, yet the effect of changing atmospheric temperatures on soil carbon flux is unresolved. This study examines associations amongst land cover, soil carbon characteristics, soil respiration, and temperature in an Arctic tundra landscape in western Greenland. We used a 1.34 meter resolution multi-spectral WorldView2 satellite image to conduct an unsupervised multi-staged ISODATA classification to characterize land cover heterogeneity. The four band image was taken on July 10th, 2010, and captures an 18 km by 15 km area in the vicinity of Kangerlussuaq. The four major terrestrial land cover classes identified were: shrub-dominated, graminoid-dominated, mixed vegetation, and bare soil. The bare soil class was comprised of patches where surface soil has been deflated by wind and ridge-top fellfield. We hypothesize that soil respiration and soil carbon storage are associated with land cover classification and temperature. We set up a hierarchical field sampling design to directly observe spatial variation between and within land cover classes along a 20 km temperature gradient extending west from Russell Glacier on the margin of the Greenland Ice Sheet. We used the land cover classification map and ground verification to select nine sites, each containing patches of the four land cover classes. Within each patch we collected soil samples from a 50 cm pit, quantified vegetation, measured active layer depth and determined landscape characteristics. From a subset of field sites we collected additional 10 cm surface soil samples to estimate soil heterogeneity within patches and measured soil respiration using a LiCor 8100 Infrared Gas Analyzer. Soil respiration rates varied with land cover classes, with values ranging from 0.2 mg C/m^2/hr in the bare soil class to over 5 mg C/m^2/hr in the graminoid-dominated class. These findings suggest that shifts in land cover vegetation types, especially soil and vegetation loss (e.g. from wind deflation), can alter landscape soil respiration. We relate soil respiration measurements to soil, vegetation, and permafrost characteristics to understand how ecosystem properties and processes vary at the landscape scale. A long-term goal of this research is to develop a spatially explicit model of soil organic matter, soil respiration, and temperature sensitivity of soil carbon dynamics for a western Greenland permafrost tundra ecosystems.

Spatio-temporal Variation in Soil Water in a Semiarid Woodland: Implications for Woody Plant Encroachment

NASA Astrophysics Data System (ADS)

Bresehars, D. D.; Myers, O. B.; Barnes, F. J.

2003-12-01

Woody plant encroachment in dryland ecosystems is an issue of global concern, yet mechanisms related to encroachment are poorly understood. Mechanisms associated with woody plant encroachment likely relate to soil water dynamics, yet few long-term data sets exist to evaluate soil water heterogeneity. Here we highlight how soil water varies both temporally (wet vs. dry years and snow vs. rain dominated months) and spatially (vertically with depth and horizontally beneath vs. between the canopies of woody plants). We measured soil water content using neutron probe over a 15-year period in a pinyon-juniper woodland at the Mesita del Buey Research Site in northern New Mexico. Our objectives included assessing (1) the temporal variability of soil water, both as a function of depth and as a function of cover (canopy patches beneath trees, intercanopy patches between trees, and edges between the two patch types); and (2) implications for the vertical and horizontal distributions of plant-available water. Our results highlight (1) large temporal variations in soil water availability, driven largely by differences in winter precipitation, and (2) the potential importance of considering horizontal as well as vertical heterogeneity in soil moisture. The spatio-temporal variation in soil water that we quantify highlights the potential complexity of changes in the water budget that could be associated with woody plant encroachment and emphasizes the importance of considering horizontal as well as vertical heterogeneity in soil water in improving our understanding of mechanisms associated with woody plant encroachment.

Role of Bacterial Communities in the Natural Suppression of Rhizoctonia solani Bare Patch Disease of Wheat (Triticum aestivum L.)

PubMed Central

Yin, Chuntao; Hulbert, Scot H.; Schroeder, Kurtis L.; Mavrodi, Olga; Mavrodi, Dmitri; Dhingra, Amit; Schillinger, William F.

2013-01-01

Rhizoctonia bare patch and root rot disease of wheat, caused by Rhizoctonia solani AG-8, develops as distinct patches of stunted plants and limits the yield of direct-seeded (no-till) wheat in the Pacific Northwest of the United States. At the site of a long-term cropping systems study near Ritzville, WA, a decline in Rhizoctonia patch disease was observed over an 11-year period. Bacterial communities from bulk and rhizosphere soil of plants from inside the patches, outside the patches, and recovered patches were analyzed by using pyrosequencing with primers designed for 16S rRNA. Taxa in the class Acidobacteria and the genus Gemmatimonas were found at higher frequencies in the rhizosphere of healthy plants outside the patches than in that of diseased plants from inside the patches. Dyella and Acidobacteria subgroup Gp7 were found at higher frequencies in recovered patches. Chitinophaga, Pedobacter, Oxalobacteriaceae (Duganella and Massilia), and Chyseobacterium were found at higher frequencies in the rhizosphere of diseased plants from inside the patches. For selected taxa, trends were validated by quantitative PCR (qPCR), and observed shifts of frequencies in the rhizosphere over time were duplicated in cycling experiments in the greenhouse that involved successive plantings of wheat in Rhizoctonia-inoculated soil. Chryseobacterium soldanellicola was isolated from the rhizosphere inside the patches and exhibited significant antagonism against R. solani AG-8 in vitro and in greenhouse tests. In conclusion, we identified novel bacterial taxa that respond to conditions affecting bare patch disease symptoms and that may be involved in suppression of Rhizoctonia root rot and bare batch disease. PMID:24056471

Experimental protocol for manipulating plant-induced soil heterogeneity.

PubMed

Brandt, Angela J; del Pino, Gaston A; Burns, Jean H

2014-03-13

Coexistence theory has often treated environmental heterogeneity as being independent of the community composition; however biotic feedbacks such as plant-soil feedbacks (PSF) have large effects on plant performance, and create environmental heterogeneity that depends on the community composition. Understanding the importance of PSF for plant community assembly necessitates understanding of the role of heterogeneity in PSF, in addition to mean PSF effects. Here, we describe a protocol for manipulating plant-induced soil heterogeneity. Two example experiments are presented: (1) a field experiment with a 6-patch grid of soils to measure plant population responses and (2) a greenhouse experiment with 2-patch soils to measure individual plant responses. Soils can be collected from the zone of root influence (soils from the rhizosphere and directly adjacent to the rhizosphere) of plants in the field from conspecific and heterospecific plant species. Replicate collections are used to avoid pseudoreplicating soil samples. These soils are then placed into separate patches for heterogeneous treatments or mixed for a homogenized treatment. Care should be taken to ensure that heterogeneous and homogenized treatments experience the same degree of soil disturbance. Plants can then be placed in these soil treatments to determine the effect of plant-induced soil heterogeneity on plant performance. We demonstrate that plant-induced heterogeneity results in different outcomes than predicted by traditional coexistence models, perhaps because of the dynamic nature of these feedbacks. Theory that incorporates environmental heterogeneity influenced by the assembling community and additional empirical work is needed to determine when heterogeneity intrinsic to the assembling community will result in different assembly outcomes compared with heterogeneity extrinsic to the community composition.

The effects of fire on greenhouse gas fluxes from mosses and lichen patches in the Yukon Kuskokwim Delta, AK.

NASA Astrophysics Data System (ADS)

Navarro-Perez, E.; Natali, S.; Schade, J. D.; Holmes, R. M.; Mann, P. J.

2017-12-01

Climate change has altered patterns of temperature, emissions of greenhouse gases and increased fire frequencies, especially in the Artic. Until recently, the Arctic has been a carbon (C) sink, but have begun releasing C in recent years, likely in response to warming temperatures, permafrost thaw and resulting changes in microbial processes. In addition, increases in fire frequency and intensity are changing vegetation patterns, particularly the relative importance of mosses and lichens. These changes alter soil temperatures, nutrient availability, and moisture, consequently affecting microbial processes and the release of greenhouse gases (GHG) such as N2O, CO2 and CH4. The objective of this research was to understand how recent fires in the Yukon-Kuskokwim River Delta in southwest Alaska are affecting the emission of GHGs from peat plateau soils. We hypothesized that the presence of mosses and lichen would change soil moisture and temperature, leading to changes in GHG production after fire. We also hypothesized that fire would increase soil nutrient availability, which would increase microbial process rates and GHG emissions. To test these hypotheses, we measured N2O, CH4 and CO2 fluxes from moss and lichen patches in three burned and unburned areas and collected soil cores for analyses of gravimetric soil moisture, carbon and nitrogen concentrations, and N mineralization rates. Soil temperatures were measured in the field with a thermocouple. Results demonstrated low but measurable CH4 emissions from all patches, suggesting peat plateaus in the YK Delta may be CH4 sources. In addition, CO2 emissions were higher in soils under lichen patches in burned areas than unburned controls. Finally, results suggest that burned areas have higher concentrations of extractable NH4 and NO3, and that increased N may be increasing soil respiration.

Long-term Effects of Shrub Encroachment and Grazing on Soil Microbial Composition and Function

NASA Astrophysics Data System (ADS)

Gallery, R. E.; O'Shea, C.; Kwiecien, A.; Predick, K.; Archer, S. R.

2014-12-01

Drylands account for ca. 35% of terrestrial net primary productivity and thus play a significant role in global water and biogeochemical cycles. Replacement of grasses by shrubs has been widespread in these systems and has altered rates of erosion and native plant biodiversity and productivity. The net effect of these changes on biogeochemical cycling is not well understood. Projected warmer and drier conditions may further alter the function and stability of these ecosystems and soil resources through direct effects on soil microbiota and plant-microbe interactions. We quantified microbial community responses to long-term livestock grazing and shrub encroachment in a Sonoran Desert grassland. We sought to characterize tipping points where biotic controls over ecosystem processes shift from being 'grass-driven' to 'shrub-driven.' We asked: How do livestock grazing (the predominant land use in dryland ecosystems) and shrub invasion (a predominant land cover change) interact to influence microbial biomass and the relative abundance of bacteria, archaea, and fungi and their extracellular enzyme activities? Surface soil from bare-ground patches, native and invasive grass rhizospheres, and bole and canopy dripline locations in patches of mature mesquite trees in long-term grazed and long-term (70+ y) protected pastures were collected and analyzed for microbial community composition, biomass, potential exoenzyme activities, and a suite of biogeochemical characteristics. We found no differences in microbial communities or the soils associated with native vs. exotic grasses. Overall, mesquite bole patches differed from other patches in all soil characteristics except potential enzyme activity: soil temperature was significantly lower, and total carbon (C) and soil moisture were significantly higher. Potential activities were lowest for bare ground and highest at shrub dripline patches for all seven exoenzymes tested. Mean potential activities for C and phosphorous (P) hydrolyzing enzymes in long-term protected pastures (C: 21.4 ug activity g-1 h-1 ± 2.3; P: 29.8 ug activity g-1 h-1 ± 3.5) were significantly higher than those in grazed pastures (C: 16.6 ug activity g-1 h-1 ± 2.1; P: 15.8 ug activity g-1 h-1 ± 2.5), suggesting long-term effects of past land use on current soil microbial populations.

FlowShape: a runoff connectivity index for patched environments, based on shape and orientation of runoff sources

NASA Astrophysics Data System (ADS)

Callegaro, Chiara; Malkinson, Dan; Ursino, Nadia; Wittenberg, Lea

2016-04-01

The properties of vegetation cover are recognized to be a key factor in determining runoff processes and yield over natural areas. Still, how the actual vegetation spatial distribution affects these processes is not completely understood. In Mediterranean semi-arid regions, patched landscapes are often found, with clumped vegetation, grass or shrubs, surrounded by bare soil patches. These two phases produce a sink-source system for runoff, as precipitation falling over bare areas barely infiltrates and rather flows downslope. In contrast, vegetated patches have high infiltrability and can partially retain the runon water. We hypothesize that, at a relatively small scale, the shape and orientation of bare soil patches with respect to the runoff flow direction is a significant for the connectivity of the runoff flow paths, and consequently for runoff values. We derive an index, FlowShape, which is candidate to be a good proxy for runoff connectivity and thus runoff production in patched environments. FlowShape is an area-weighted average of the geometrical properties of each bare soil patch. Eight experimental plots in northern Israel were monitored during 2 years after a wildfire which occurred in 2006. Runoff was collected and measured - along with rainfall depth - after each rainfall event, at different levels of vegetation cover corresponding to post-fire recovery of vegetation and seasonality. We obtained a good correlation between FlowShape and the runoff coefficient, at two conditions: a minimal percentage of vegetation cover over the plot, and minimal rainfall depth. Our results support the hypothesis that the spatial distribution of the two phases (vegetation and bare soil) in patched landscapes dictates, at least partially, runoff yield. The correlation between the runoff coefficient and FlowShape, which accounts for shape and orientation of soil patches, is higher than the correlation between the runoff coefficient and the bare soil percentage alone. Besides that, the existence of a vegetation cover threshold under which FlowShape loses correlation with runoff yield, suggests that different processes occur at different levels of vegetation cover. On bare or almost bare plots, runoff flows as a sheet, and small isolated plants do not impose a directionality to the flow or interrupt runoff connectivity. On the other hand, rainfall depth - and possibly rainfall intensity - also affect the hydrological processes of infiltration and runoff production, and thus the applicability of any purely geometrical index. We compared the correlation to runoff coefficient with the FlowShape and FlowLength, a well-known index for runoff connectivity (Mayor et al., 2008) which is defined as the average of runoff flow paths over the plot. As microtopography was not available, our plots were idealized as planar hillslopes. We found that FlowShape is a better predictor than FlowLength for runoff yield over our experimental plots.

Microstrip patch antenna receiving array operating in the Ku band

NASA Technical Reports Server (NTRS)

Walcher, Douglas A.

1996-01-01

Microstrip patch antennas were first investigated from the idea that it would be highly advantageous to fabricate radiating elements (antennas) on the same dielectric substrate as RF circuitry and transmission lines. Other advantages were soon discovered to be its lightweight, low profile, conformability to shaped surfaces, and low manufacturing costs. Unfortunately, these same patches continually exhibit narrow bandwidths, wide beamwidths, and low antenna gain. This thesis will present the design and experimental results of a microstrip patch antenna receiving array operating in the Ku band. An antenna array will be designed in an attempt to improve its performance over a single patch. Most Ku band information signals are either wide band television images or narrow band data and voice channels. An attempt to improve the gain of the array by introducing parasitic patches on top of the array will also be presented in this thesis.

Impact of managed moorland burning on peat nutrient and base cation status

NASA Astrophysics Data System (ADS)

Palmer, Sheila; Gilpin, Martin; Wearing, Catherine; Johnston, Kerrylyn; Holden, Joseph; Brown, Lee

2013-04-01

Controlled 'patch' burning of moorland vegetation has been used for decades in the UK to stimulate growth of heather (Calluna vulgaris) for game bird habitat and livestock grazing. Typically small patches (300-900 m2) are burned in rotations of 8-25 years. However, our understanding of the short-to-medium term environmental impacts of the practice on these sensitive upland areas has so far been limited by a lack of scientific data. In particular the effect of burning on concentrations of base cations and acid-base status of these highly organic soils has implications both for ecosystem nutrient status and for buffering of acidic waters. As part of the EMBER project peat chemistry data were collected in ten upland blanket peat catchments in the UK. Five catchments were subject to a history of prescribed rotational patch burning. The other five catchments acted as controls which were not subject to burning, nor confounded by other detrimental activities such as drainage or forestry. Soil solution chemistry was also monitored at two intensively studied sites (one regularly burned and one control). Fifty-centimetre soil cores, sectioned into 5-cm intervals, were collected from triplicate patches of four burn ages at each burned site, and from twelve locations at similar hillslope positions at each control site. At the two intensively monitored sites, soil solution chemistry was monitored at four depths in each patch. Across all sites, burned plots had significantly smaller cation exchange capacities, lower concentrations of exchangeable base cations and increased concentrations of exchangeable H+ and Al3+ in near-surface soil. C/N ratios were also lower in burned compared to unburned surface soils. There was no consistent trend between burn age and peat chemistry across all burned sites, possibly reflecting local controls on post-burn recovery rates or external influences on burn management decisions. At the intensively monitored site, plots burned less than two years prior to sampling had significantly smaller exchange capacities and lower concentrations of soil base cations in surface soils relative to plots burned 15-25 years previously. In contrast, surface soil solutions in recently burned plots were enriched in base cations relative to older plots and relative to the control site, possibly due to enhanced leaching at bare soil surfaces. The results offer evidence for an impact of burning on peat nutrient and acid-base status, but suggest that soils recover given time with no further burning.

Spatial heterogeneity of subsurface soil texture drives the landscape-scale pattern of woody patches in a subtropical savanna

USDA-ARS?s Scientific Manuscript database

In the Rio Grande Plains of southern Texas, subtropical savanna vegetation is characterized by a two-phase pattern consisting of discrete woody patches embedded within a C4 grassland matrix. Prior trench transect studies have suggested that, on upland portions of the landscape, large woody patches (...

Relationship among soil surface properties, hydrology and nitrogen cycling along a climatological gradient in drylands

NASA Astrophysics Data System (ADS)

Zaady, E.; Segoli, M.; Eldridge, D. J.; Groffman, P. M.; Boeken, B.; Shachak, M.

2009-04-01

Primary production and nutrient cycling in dryland systems are limited by water supply. There are two groups of primary producers, high biomass production plants and low biomass producing organisms found in biological soil crusts (BSC's), which control energy flow, nutrient cycling and hydrology. Biological or biogenic soil crusts are common in the world's drylands, from dry sub-humid to hyper-arid systems. The crusts are formed by communities of microphytes, mainly cyanobacteria, green algae, mosses, and lichens. The extracellular polysaccharide materials produced by the crust organisms attach soil particles, creating a solid horizontal layer of crust. Biological soil crusts modify soil quality by (1) aggregating soil particles, thereby reducing wind and water erosion; (2) reducing water infiltration, causing overland water run-off; and (3) N fixation and C sequestration. Dryland landscapes are two phase mosaic composed of BSC and high production patches. Development or loss of BSC may trigger changes in the spatial distribution of the patch types and therefore transitions between functional and degraded ecosystem states. We present a conceptual model depicting the function of each patch type and the link between them. Taking into account the contrast between low and high vegetation cover of dryland systems and their role in controlling soil nitrogen and water flows. The model describes the functioning of dryland systems with low biomass producing crust organisms cover, low rainfall, low top soil water and production, which cause low infiltration rate, low N uptake, nitrate accumulation, high evaporation and runoff. This leads to leaching of nitrates, oxygen depletion with high anaerobic conditions, high denitrification rates and N loss, resulting in low plant cover and soil organic matter i.e., degraded soil. It also depicts the functioning of the high production plants under low rainfall regimes resulting in low rates of N and energy flows. The model shows that when the two patches are combined into a source-sink system there is a synergetic effect increasing productivity and diversity, and N cycling and hydrology. The strength of the synergism depends on the climatological gradient. Correspondence to: Eli Zaady (Email: zaadye@volcani.agri.gov.il).

Enhancing SMAP Soil Moisture Retrievals via Superresolution Techniques

NASA Astrophysics Data System (ADS)

Beale, K. D.; Ebtehaj, A. M.; Romberg, J. K.; Bras, R. L.

2017-12-01

Soil moisture is a key state variable that modulates land-atmosphere interactions and its high-resolution global scale estimates are essential for improved weather forecasting, drought prediction, crop management, and the safety of troop mobility. Currently, NASA's Soil Moisture Active/Passive (SMAP) satellite provides a global picture of soil moisture variability at a resolution of 36 km, which is prohibitive for some hydrologic applications. The goal of this research is to enhance the resolution of SMAP passive microwave retrievals by a factor of 2 to 4 using modern superresolution techniques that rely on the knowledge of high-resolution land surface models. In this work, we explore several super-resolution techniques including an empirical dictionary method, a learned dictionary method, and a three-layer convolutional neural network. Using a year of global high-resolution land surface model simulations as training set, we found that we are able to produce high-resolution soil moisture maps that outperform the original low-resolution observations both qualitatively and quantitatively. In particular, on a patch-by-patch basis we are able to produce estimates of high-resolution soil moisture maps that improve on the original low-resolution patches by on average 6% in terms of mean-squared error, and 14% in terms of the structural similarity index.

Landscape functionality of plant communities in the Impala Platinum mining area, Rustenburg.

PubMed

van der Walt, L; Cilliers, S S; Kellner, K; Tongway, D; van Rensburg, L

2012-12-30

The tremendous growth of the platinum mining industry in South Africa has affected the natural environment adversely. The waste produced by platinum mineral processing is alkaline, biologically sterile and has a low water-holding capacity. These properties in the environment may constitute dysfunctional areas that will create 'leaky' and dysfunctional landscapes, limiting biological development. Landscape Function Analysis (LFA) is a monitoring procedure that assesses the degradation of landscapes, as brought about by human, animal and natural activities, through rapidly assessing certain soil surface indicators which indicate the biophysical functionality of the system. The "Trigger-Transfer-Reserve-Pulse" (TTRP) conceptual framework forms the foundation for assessing landscape function when using LFA. The two main aspects of this framework are the loss of resources from the system and the utilisation of resources by the system. After a survey of landscape heterogeneity to reflect the spatial organisation of the landscape, soil surface indicators are assessed within different patch types (identifiable units that retains resources that pass through the system) and interpatches (units between patches where vital resources are not retained, but lost) to assess the capacity of patches with various physical properties in regulating the effectiveness of resource control in the landscape. Indices describing landscape organisation are computed by a spreadsheet analysis, as well as soil surface quality indices. When assembled in different combinations, three indices emerge that reflect soil productive potential, namely: the (1) surface stability, (2) infiltration capacity, and (3) the nutrient cycling potential of the landscape. In this study we compared the landscape functionality of natural thornveld areas, rehabilitated opencast mines and rehabilitated slopes of tailings dams in the area leased for mining in the Rustenburg area. Our results show that the rehabilitated areas had a higher total SSA functionality due to higher infiltration and nutrient cycling indices than the natural thornveld landscapes. The length of interpatches and the width of patches greatly influenced the landscape function of the studied areas. The natural thornveld areas had a marginally higher total patch area than the rehabilitated areas. Vegetated patches (grass-, sparse grass-, grassy forb-, and grassy shrub-patches) generally scored the highest functionality indices, whilst bare soil interpatches contributed to the landscape functionality of the various plant communities the least. Copyright © 2012 Elsevier Ltd. All rights reserved.

Compact, Lightweight Dual- Frequency Microstrip Antenna Feed for Future Soil Moisture and Sea Surface Salinity Missions

NASA Technical Reports Server (NTRS)

Yueh, Simon H.; Wilson, William J.; Njoku, Eni; Hunter, Don; Dinardo, Steve; Kona, Keerti S.; Manteghi, Majid; Gies, Dennis; Rahmat-Samii, Yahya

2004-01-01

The development of a compact, lightweight, dual frequency antenna feed for future soil moisture and sea surface salinity (SSS) missions is described. The design is based on the microstrip stacked-patch array (MSPA) to be used to feed a large lightweight deployable rotating mesh antenna for spaceborne L-band (approx. 1 GHz) passive and active sensing systems. The design features will also enable applications to airborne sensors operating on small aircrafts. This paper describes the design of stacked patch elements, 16-element array configuration and power-divider beam forming network The test results from the fabrication of stacked patches and power divider were also described.

Analysis of aggregate pier systems for stabilization of subgrade settlement.

DOT National Transportation Integrated Search

2014-12-01

Every year, ODOT undertakes numerous pavement patching/resurfacing projects to repair pavement : distress and structural failure due to soft and/or organic soils constituting the subgrade. Other than the : temporary solution of patching/resurfacing, ...

Process-based modelling of NH3 exchange with grazed grasslands

NASA Astrophysics Data System (ADS)

Móring, Andrea; Vieno, Massimo; Doherty, Ruth M.; Milford, Celia; Nemitz, Eiko; Twigg, Marsailidh M.; Horváth, László; Sutton, Mark A.

2017-09-01

In this study the GAG model, a process-based ammonia (NH3) emission model for urine patches, was extended and applied for the field scale. The new model (GAG_field) was tested over two modelling periods, for which micrometeorological NH3 flux data were available. Acknowledging uncertainties in the measurements, the model was able to simulate the main features of the observed fluxes. The temporal evolution of the simulated NH3 exchange flux was found to be dominated by NH3 emission from the urine patches, offset by simultaneous NH3 deposition to areas of the field not affected by urine. The simulations show how NH3 fluxes over a grazed field in a given day can be affected by urine patches deposited several days earlier, linked to the interaction of volatilization processes with soil pH dynamics. Sensitivity analysis showed that GAG_field was more sensitive to soil buffering capacity (β), field capacity (θfc) and permanent wilting point (θpwp) than the patch-scale model. The reason for these different sensitivities is dual. Firstly, the difference originates from the different scales. Secondly, the difference can be explained by the different initial soil pH and physical properties, which determine the maximum volume of urine that can be stored in the NH3 source layer. It was found that in the case of urine patches with a higher initial soil pH and higher initial soil water content, the sensitivity of NH3 exchange to β was stronger. Also, in the case of a higher initial soil water content, NH3 exchange was more sensitive to the changes in θfc and θpwp. The sensitivity analysis showed that the nitrogen content of urine (cN) is associated with high uncertainty in the simulated fluxes. However, model experiments based on cN values randomized from an estimated statistical distribution indicated that this uncertainty is considerably smaller in practice. Finally, GAG_field was tested with a constant soil pH of 7.5. The variation of NH3 fluxes simulated in this way showed a good agreement with those from the simulations with the original approach, accounting for a dynamically changing soil pH. These results suggest a way for model simplification when GAG_field is applied later at regional scale.

Landscape heterogeneity controls growth variability of alder, willow, and birch shrubs in response to observed increases in temperature and snow

NASA Astrophysics Data System (ADS)

Tape, K. D.; Hallinger, M.; Buras, A.; Wilmking, M.

2013-12-01

Over the last decade, evidence has emerged for a circumarctic trend of increasing shrub cover in tundra regions. On the Alaskan tundra, repeat photography has shown spatial differences in shrub patch dynamics: since 1950, most patches expanded while some remained stable. In this study we explore the underpinnings of this landscape heterogeneity by sampling the three dominant shrubs of the Alaskan tundra--alder, willow and birch--and creating shrub ring width chronologies to determine the influence of climate variability on shrub growth. Shrubs of expanding patches of all three species grew at higher rates than shrubs of stable patches. Alder and willow shrubs in expanding patches exhibited mainly positive growth trends, while their counterparts in stable patches exhibited mainly negative growth trends. Birch shrub growth declined in expanding and stable patches. Alder and willow shrub growth rates and responses to climate were controlled more by soil characteristics than by their genus; expanding alder and willow shrubs showed significant positive correlations with spring and summer temperatures, whereas alder and willow shrubs of stable patches were negatively influenced by winter precipitation. The widely-scattered stable shrub patches sampled here are considered ';moist tussock tundra,' which covers 13.4% of the low arctic landscape. In moist tussock tundra, and presumably also wet tussock tundra, the negative influence of deeper snow on shrubs outweighed the positive influence of deeper snow on ground temperature and nutrient stocks articulated by the snow-shrub-microbe hypothesis. Thus, while shrubs of expanding patches have generally profited from warmer summers, shrubs of stable patches have suffered from increased soil moisture resulting from increased snowmelt water. These results underscore the spatial and temporal complexity in shrub-climate dynamics, which will require considerable finesse to appropriately integrate into modeling efforts.

The effect of cultivation on the size, shape, and persistence of disease patches in fields.

PubMed

Truscott, J E; Gilligan, C A

2001-06-19

Epidemics of soil-borne plant disease are characterized by patchiness because of restricted dispersal of inoculum. The density of inoculum within disease patches depends on a sequence comprising local amplification during the parasitic phase followed by dispersal of inoculum by cultivation during the intercrop period. The mechanisms that control size, shape, and persistence have received very little rigorous attention in epidemiological theory. Here we derive a model for dispersal of inoculum in soil by cultivation that takes account into the discrete stochastic nature of the system in time and space. Two parameters, probability of movement and mean dispersal distance, characterize lateral dispersal of inoculum by cultivation. The dispersal parameters are used in combination with the characteristic area and dimensions of host plants to identify criteria that control the shape and size of disease patches. We derive a critical value for the probability of movement for the formation of cross-shaped patches and show that this is independent of the amount of inoculum. We examine the interaction between local amplification of inoculum by parasitic activity and subsequent dilution by dispersal and identify criteria whereby asymptomatic patches may persist as inoculum falls below a threshold necessary for symptoms to appear in the subsequent crop. The model is motivated by the spread of rhizomania, an economically important soil-borne disease of sugar beet. However, the results have broad applicability to a very wide range of diseases that survive as discrete units of inoculum. The application of the model to patch dynamics of weed seeds and local introductions of genetically modified seeds is also discussed.

Soil Respiration at Dominant Patch Types within a Managed Northern Wisconsin Landscape

Treesearch

Eug& #233; nie Euskirchen; Jiquan Chen; Eric J. Gustafson; Siyan Ma; Siyan Ma

2003-01-01

Soil respiration (SR), a substantial component of the forest carbon budget, has been studied extensively at the ecosystem, regional, continental, and global scales, but little progress has been made toward understanding SR over managed forest landscapes. Soil respiration is often influenced by soil temperature (Ts), soil moisture (Ms...

Soil respiration at dominant patch types within a managed northern Wisconsin landscape

Treesearch

Eugenie S. Euskirchen; Jiquan Chen; Eric J. Gustafson; Siyan Ma

2003-01-01

Soil respiration (SR), a substantial component of the forest carbon budget, has been studied extensively at the ecosystem, regional, continental, and global scales, but little progress has been made toward understanding SR over managed forest landscapes. Soil respiration is often influenced by soil temperature (Ts), soil moisture (Ms...

Convection and the Soil-Moisture Precipitation Feedback

NASA Astrophysics Data System (ADS)

Schar, C.; Froidevaux, P.; Keller, M.; Schlemmer, L.; Langhans, W.; Schmidli, J.

2014-12-01

The soil moisture - precipitation (SMP) feedback is of key importance for climate and climate change. A positive SMP feedback tends to amplify the hydrological response to external forcings (and thereby fosters precipitation and drought extremes), while a negative SMP feedback tends to moderate the influence of external forcings (and thereby stabilizes the hydrological cycle). The sign of the SMP feedback is poorly constrained by the current literature. Theoretical, modeling and observational studies partly disagree, and have suggested both negative and positive feedback loops. Can wet soil anomalies indeed result in either an increase or a decrease of precipitation (positive or negative SMP feedback, respectively)? Here we investigate the local SMP feedback using real-case and idealized convection-resolving simulations. An idealized simulation strategy is developed, which is able to replicate both signs of the feedback loop, depending on the environmental parameters. The mechanism relies on horizontal soil moisture variations, which may develop and intensify spontaneously. The positive expression of the feedback is associated with the initiation of convection over dry soil patches, but the convective cells then propagate over wet patches, where they strengthen and preferentially precipitate. The negative feedback may occur when the wind profile is too weak to support the propagation of convective features from dry to wet areas. Precipitation is then generally weaker and falls preferentially over dry patches. The results highlight the role of the mid-tropospheric flow in determining the sign of the feedback. A key element of the positive feedback is the exploitation of both low convective inhibition (CIN) over dry patches (for the initiation of convection), and high CAPE over wet patches (for the generation of precipitation). The results of this study will also be discussed in relation to climate change scenarios that exhibit large biases in surface temperature and interannual variability over mid-latitude summer climates, both over Europe and North America. It is argued that parameterized convection may contribute towards such biases by overemphasizing a positive SMP feedback.

Metal(loid) allocation and nutrient retranslocation in Pinus halepensis trees growing on semiarid mine tailings.

PubMed

Parraga-Aguado, Isabel; Querejeta, Jose-Ignacio; González-Alcaraz, María Nazaret; Conesa, Hector M

2014-07-01

The goal of this study was to evaluate internal metal(loid) cycling and the risk of metal(loid) accumulation in litter from Pinus halepensis trees growing at a mine tailing disposal site in semiarid Southeast Spain. Internal nutrient retranslocation was also evaluated in order to gain insight into the ability of pine trees to cope with the low-fertility soil conditions at the tailings. We measured metal(loid) concentrations in the foliage (young and old needles), woody stems and fresh leaf litter of pine trees growing on tailings. The nutrient status and stable isotope composition of pine foliage (δ(13)C, δ(15)N, δ(18)O as indicators of photosynthesis and water use efficiency) were also analyzed. Tailing soil properties in vegetation patches and in adjacent bare soil patches were characterized as well. Significant amounts of metal(loid)s such us Cd, Cu, Pb and Sb were immobilized in the woody stems of Pinus halepensis trees growing on tailings. Leaf litterfall showed high concentrations of As, Cd, Sb, Pb and Zn, which thereby return to the soil. However, water extractable metal(loid) concentrations in tailing soils were similar between vegetation patches (mineral soil under the litter layer) and bare soil patches. The pines growing on mine tailings showed very low foliar P concentrations in all leaf age classes, which suggests severe P deficiency. Young (current year) needles showed lower accumulation of metal(loid)s, higher nutrient concentrations (P and K), and higher water use efficiency (as indicated by and δ(13)C and δ(18)O data) than older needles. Substantial nutrient resorption occurred before leaf litterfall, with 46% retranslocation efficiency for P and 89% for K. In conclusion, phytostabilization of semiarid mine tailings with Pinus halepensis is feasible but would require careful monitoring of the trace elements released from litterfall, in order to assess the long term risk of metal(loid) transfer to the food chain. Copyright © 2014 Elsevier B.V. All rights reserved.

Soil nitrogen dynamics as an indicator for longleaf pine restoration

Treesearch

George L. McCaskill; Shibu Jose; Ashvini Chauhan; Andrew V. Ogram

2017-01-01

Assessing the status of soil nutrients with their corresponding microbial communities provides important information about degraded soils during the restoration of coastal wet pine forests. Net nitrogen mineralization, nitrogen-oxidizing bacteria (NOB), and soil microbial biomass were compared with patch-derived volume along a 110-year longleaf pine (Pinus...

[Response of fine roots to soil nutrient spatial heterogeneity].

PubMed

Wang, Qingcheng; Cheng, Yunhuan

2004-06-01

The spatial heterogeneity is the complexity and variation of systems or their attributes, and the heterogeneity of soil nutrients is ubiquitous in all natural ecosystems. The scale of spatial heterogeneity varies considerably among different ecosystems, from tens of centimeters to hundred meters. Some of the scales can be detected by individual plant. Because the growth of individual plants can be strongly influenced by soil heterogeneity, it follows that the inter-specific competition should also be affected. During the long process of evolution, plants developed various plastic responses with their root system, including morphological, physiological and mycorrhizal plasticity, to maximize the nutrient acquisition from heterogeneous soil resources. Morphological plasticity, an adjustment in root system spatial allocation and architecture in response to spatial heterogeneous distribution of available soil resources, has been most intensively studied, and root proliferation in nutrient rich patches has been certified for many species. The species that do respond may have an increased rate of nutrient uptake, leading to a competitive advantage. Scale and precision are two important features employed in describing the size and foraging behavior of root system. It was hypothesized that scale and precision is negatively related, i. e., the species with high scale of root system tend to be a less precise forager. The outcomes of different research work have been diverse, far from reaching a consensus. Species with high scale are not necessarily less precise in fine root allocation, and vice versa. The proliferation of fine root in enriched micro-sites is species dependent, and also affected by other factors, such as patch attributes (size and nutrients concentration), nutrients, and overall soil fertility. Beside root proliferation in nutrient enriched patches, plants can also adapt themselves to the heterogeneous soil environment by altering other root characteristics such as fine root diameter, branch angle, length, and spatial architecture of root system. Physiological and mycorrhizal plasticity can add some influence on the morphological plasticity to some extent, but they are less studied. Roots located in different patches can quickly regulate their nutrient uptake kinetics within different nutrient patches, and increase overall nutrient uptake. Physiological response may, to certain extent, reduce morphological response, and is meaningful for plant growth on soils with frequently changing spatial and temporal heterogeneity. Mycorrhizal plasticity has been least studied so far. Some researches revealed that mycorrhiza, rather than fine root, proliferated in enriched patches. But, it is not the case with other studies. The proliferation of mycorrhiza within enriched patches is more profitable in term of carbon invest. The effect of fine root proliferation on nutrient uptake is complex, depending on ion mobility and whether or not neighboring plant exists. The influence of root plasticity on the growth of plants is species specific. Some species (sensitive species) gain growth benefit, while others don't. The ability of an individual plant to response to heterogeneous resources has significant effect on its competitive ability and its fate within the community, and eventually shapes the composition and structure of the community.

Primary succession seen through the shifted patterns of plant traits and soil macrofauna above/under-ground activity, a different ecological perspective towards post mining sites

NASA Astrophysics Data System (ADS)

Moradi, Jabbar; Mudrak, Ondrej; Frouz, Jan

2016-04-01

Using of trait distribution is becoming a promising field of ecology. Community weighted mean (CWM) values, in this regard, can summarize the shifts in the mean trait values within communities via environmental selection for a specific functional trait. Although traits have been widely used to describe relationships between plants and environmental variables, they are less used in study of interactions with other trophical levels. In 2013, we conducted a study to see the effect of plant community traits on soil and soil macrofauna epigeic/endogeic activity. We used sites of 10, 18, 28 and 55 years old in a succession sequence located at Sokolov post-mining site, Czech Republic. In each site we studied bare, grassy and woody patches. Vegetation traits, namely plant forms (i.e. grass, forb, legume, shrub and tree), canopy height, LDMC (leaf dry matter content), seed mass, and presence/absence of taproot during the whole life cycle were identified in 1-m×1-m quadrates. Soil fauna samples were collected from the same patches. Four patches were sampled in each plot and patch type. Fauna were extracted with a Tullgren apparatus, identified to family and counted. Their numbers were expressed per m2. CWM values of plan traits and faunal surface activity were calculated using the FD package in R. The computed values were transferred afterwards to CANOCO for further analyses. The effect of patches and age on dependent variables was determined with two-way ANOVAs. The higher LDMC in grassy and woody patches, particularly its correlation with 28 yrs site, can be related to higher reported P levels in 28 yrs site in specific, and generally higher nutrient return and C accumulation in vegetated sites. The absence of taproot in vegetated patches and 28 yrs site can be because of more competition with other species. It seems that the correlation between seed mass with oldest site and legume form is, roughly, a result of the change in community composition from forbs and grasses to "late succession species" of the oldest ages such as legumes.We infer that by time passing, thru soil development in older sites, soil medium became more favorable for larval stages and endogeic lifestyle of fauna, in other words, environmental selection and consequently the successful colonization of fauna holding the similar trait (i.e. epigeic activity) ended up in an endogeic community shift towards developed soils under older sites. The shift in CWM value of fauna community clearly shows importance of soil development for a stable colonization and regeneration of migrated communities. Traits related to life history of fauna, e.g. epigeic and endogeic, as well as correlated plant traits instead of plant species communities, i.e. LDMC and plant forms, can be of great value for an enhanced perception of the community pattern dynamics through time and space. The incorporation of trait diversity in primary and secondary successional studies seems to be promising in order to gain a better understanding of the successional changes.

Quantifying the influence of deep soil moisture on ecosystem albedo: the role of vegetation Zulia M. Sánchez-Mejía 1 and Shirley A. Papuga1 1School of Natural Resources and the Environment, University of Arizona, Tucson, AZ

NASA Astrophysics Data System (ADS)

Sanchez-Mejia, Z. M.; Papuga, S. A.

2012-12-01

Water limited ecosystems in arid and semiarid regions are characterized by sparse vegetation and a relatively large fraction of bare soil. Importantly, the land surface in these dryland regions is highly sensitive to pulses of moisture that affect the vegetation canopy in density and color, as well as the soil color. Changes in surface conditions due to these pulses have been shown to affect the surface energy fluxes and atmospheric processes in these regions. For instance, previous studies have shown that shallow soil moisture ( < 20 cm below the surface) significantly changes surface albedo (a= SWup/ SWin). Recent studies have highlighted the importance of deep soil moisture ( > 20 cm below the surface) for vegetation dynamics in these regions. We hypothesize that deep soil moisture will change vegetation canopy density and color enough that changes in albedo will be observable at the surface, therefore linking deep soil moisture and albedo. We adopt a conceptual framework to address this hypothesis, where at any point in time the soil profile falls into one of four cases: (1) dry shallow soil and dry deep soil; (2) wet shallow soil and dry deep soil; (3) wet shallow soil and wet deep soil; and (4) dry shallow soil and wet deep soil. At a creosotebush dominated ecosystem of the Santa Rita Experimental Range, southern Arizona during summers of 2011 and 2012, we took albedo measurements during these cases at multiple bare and vegetated patches within the footprint of an eddy covariance tower. We found that when the soil is completely dry (Case 1) albedo is highest in both bare and vegetated patches. Likewise, when the soil is wet in both the shallow and deep regions (Case 3), albedo is lowest in both bare and vegetated patches. Interestingly, we also found that albedo is significantly lower for vegetated patches when the deep soil is wet and shallow soil is dry (Case 4). These results imply that deep soil moisture can be important in altering ecosystem level albedo. We note that ecosystems with higher percent vegetative cover are likely to be more sensitive to deep soil moisture driven changes in albedo. To quantify the influence of percent cover on ecosystem albedo, we populate a 100 x 100 cell grid randomly with bare and vegetated cells. For each case, we assign an albedo value to each cell based on probability distribution functions (PDFs) of soil moisture and albedo created from our field campaign data. Using this technique we can identify for each soil moisture case at which point the percent vegetative cover will significantly influence ecosystem albedo. Quantitative analyses of these ecosystem interactions help identify the unique role of deep soil moisture in land surface - atmosphere interactions.

Quantifying soil surface change in degraded drylands: shrub encroachment and effects of fire and vegetation removal in a desert grassland

USGS Publications Warehouse

Sankey, Joel B.; Ravi, Sujith; Wallace, Cynthia S.A.; Webb, Robert H.; Huxman, Travis E.

2012-01-01

Woody plant encroachment, a worldwide phenomenon, is a major driver of land degradation in desert grasslands. Woody plant encroachment by shrub functional types ultimately leads to the formation of a patchy landscape with fertile shrub patches interspaced with nutrient-depleted bare soil patches. This is considered to be an irreversible process of land and soil degradation. Recent studies have indicated that in the early stages of shrub encroachment, when there is sufficient herbaceous connectivity, fires (prescribed or natural) might provide some reversibility to the shrub encroachment process by negatively affecting shrub demography and homogenizing soil resources across patches within weeks to months after burning. A comprehensive understanding of longer term changes in microtopography and spatial patterning of soil properties following fire in shrub-encroached grasslands is desirable. Here, we investigate the changes in microtopography with LiDAR (light detection and ranging), vegetation recovery, and spatial pattering of soil properties in replicated burned, clipped, and control areas in a shrub-grass transition zone in the northern Chihuahuan Desert four years after prescribed fire or clipping. Results indicate a greater homogeneity in soil, microtopography, and vegetation patterning on burned relative to clipped and control treatments. Findings provide further evidence that disturbance by prescribed fire may allow for reversal of the shrub encroachment process, if the event occurs in the early stages of the vegetation shift. Improved understanding of longer-term effects of fire and associated changes in soil patterning can inform the use and role of fire in the context of changing disturbance regimes and climate.

The Effects of Long Time Conservation of Heavily Grazed Shrubland: A Case Study in the Northern Negev, Israel

NASA Astrophysics Data System (ADS)

Leu, Stefan; Mussery, Amir Mor; Budovsky, Arie

2014-08-01

One of the major reasons for desertification is unrestricted grazing leading to vegetation depletion, soil erosion and degradation, phenomena often considered irreversible in the short term. Here, we compare soil and biological parameters of degraded and conserved, recently rehabilitated arid shrubland in the Northern Negev, Israel. The study area was restored by conservation efforts including a strictly controlled grazing regime initiated in 1992. The visually recognizable improvement in the ecology of the restored shrubland is reflected in significant improvement in all examined biotic (herbaceous biomass, shrub patch density, and insect activity), and soil parameters (nutrients, organic matter content, moisture, and water infiltration). The difference is created predominantly by restoration of large biological patches composed of shrubs and other perennial plants often associated with ant or termite nests, where the most significant increases in productivity and soil quality were observed. In the conserved shrubland such patches covered 35 or 25 % of the area (in a normal and a drought year, respectively). In the degraded shrubland 5 % or less of the area was occupied by such patches that were much smaller and of lower biological complexity. With respect to plant biodiversity, six plant species were found only—and 18 others became significantly more common—in the rehabilitated area. The results of this article indicate that functional arid drylands can be restored within <16 years relying on strict conservation management with reduced grazing intensity.

The Mystery Soil

NASA Technical Reports Server (NTRS)

2004-01-01

[figure removed for brevity, see original site] Click for larger view

This high-resolution image from the panoramic camera on the Mars Exploration Rover Spirit shows the region containing the patch of soil scientists examined at Gusev Crater just after Spirit rolled off the Columbia Memorial Station. Scientists examined this patch on the 13th and 15th martian days, or sols, of Spirit's journey. Using nearly all the science instruments located on the rover's instrument deployment device or 'arm,' scientists yielded some puzzling results including the detection of a mineral called olivine and the appearance that the soil is stronger and more cohesive than they expected. Like detectives searching for clues, the science team will continue to peruse the landscape for explanations of their findings.

Data taken from the camera's red, green and blue filters were combined to create this approximate true color picture, acquired on the 12th martian day, or sol, of Spirit's journey.

The yellow box (see inset above) in this high-resolution image from the panoramic camera on the Mars Exploration Rover Spirit outlines the patch of soil scientists examined at Gusev Crater just after Spirit rolled off the Columbia Memorial Station.

Terra Pretas: Charcoal Amendments Influence on Relict Soils and Modern Agriculture

ERIC Educational Resources Information Center

Ricigliano, Kristin

2011-01-01

Most soils found in the Amazon region are characterized by highly weathered profiles that are incapable of longterm agricultural production. However, small patches of highly fertile relict soil referred to as Terra Pretas, are also found in the Amazon region, and have maintained their integrity for thousands of years. These soils were…

Compact, Lightweight Dual-Frequency Microstrip Antenna Feed for Future Soil Moisture and Sea Surface Salinity Missions

NASA Technical Reports Server (NTRS)

Yueh, Simon; Wilson, William J.; Njoku, Eni; Dinardo, Steve; Hunter, Don; Rahmat-Samii, Yahya; Kona, Keerti S.; Manteghi, Majid

2006-01-01

The development of a compact, lightweight, dual-frequency antenna feed for future soil moisture and sea surface salinity (SSS) missions is described. The design is based on the microstrip stacked-patch array (MSPA) to be used to feed a large lightweight deployable rotating mesh antenna for spaceborne L-band (approx.1 GHz) passive and active sensing systems. The design features will also enable applications to airborne soil moisture and salinity remote sensing sensors operating on small aircrafts. This paper describes the design of stacked patch elements and 16-element array configuration. The results from the return loss, antenna pattern measurements and sky tests are also described.

Lakes on Titan

NASA Image and Video Library

2006-07-24

The Cassini spacecraft, using its radar system, has discovered very strong evidence for hydrocarbon lakes on Titan. Dark patches, which resemble terrestrial lakes, seem to be sprinkled all over the high latitudes surrounding Titan north pole

Silica-Rich Soil Found by Spirit

NASA Technical Reports Server (NTRS)

2007-01-01

NASA's Mars Exploration Rover Spirit has found a patch of bright-toned soil so rich in silica that scientists propose water must have been involved in concentrating it.

The silica-rich patch, informally named 'Gertrude Weise' after a player in the All-American Girls Professional Baseball League, was exposed when Spirit drove over it during the 1,150th Martian day, or sol, of Spirit's Mars surface mission (March 29, 2007). One of Spirit's six wheels no longer rotates, so it leaves a deep track as it drags through soil. Most patches of disturbed, bright soil that Spirit had investigated previously are rich in sulfur, but this one has very little sulfur and is about 90 percent silica.

This image is a approximately true-color composite of three images taken through different filters by Spirit's panoramic camera on Sol 1,187 (May 6). The track of disturbed soil is roughly 20 centimeters (8 inches) wide.

Spirit's miniature thermal emission spectrometer, which can assess a target's mineral composition from a distance, examined the Gertrude Weise patch on Sol 1,172 (April 20). The indications it found for silica in the overturned soil prompted a decision to drive Spirit close enough to touch the soil with the alpha particle X-ray spectrometer, a chemical analyzer at the end of Spirit's robotic arm. The alpha particle X-ray spectrometer collected data about this target on sols 1,189 and 1,190 (May 8 and May 9) and produced the finding of approximately 90 percent silica.

Silica is silicon dioxide. On Earth, it commonly occurs as the crystalline mineral quartz and is the main ingredient in window glass. The Martian silica at Gertrude Weise is non-crystalline, with no detectable quartz.

In most cases, water is required to produce such a concentrated deposit of silica, according to members of the rover science team. One possible origin for the silica could have been interaction of soil with acidic steam produced by volcanic activity. Another could have been from water in a hot spring environment.

Do changes in grazing pressure and the degree of shrub encroachment alter the effects of individual shrubs on understorey plant communities and soil function?

PubMed

Soliveres, Santiago; Eldridge, David J

2014-04-01

Shrub canopies in semi-arid environments often produce positive effects on soil fertility, and on the richness and biomass of understorey plant communities. However, both positive and negative effects of shrub encroachment on plant and soil attributes have been reported at the landscape-level. The contrasting results between patch- and landscape-level effects in shrublands could be caused by differences in the degree of shrub encroachment or grazing pressure, both of which are likely to reduce the ability of individual shrubs to ameliorate their understorey environment.We examined how grazing and shrub encroachment (measured as landscape-level shrub cover) influence patch-level effects of shrubs on plant density, biomass and similarity in species composition between shrub understories and open areas, and on soil stability, nutrient cycling, and infiltration in two semi-arid Australian woodlands.Individual shrubs had consistently positive effects on all plant and soil variables (average increase of 23% for all variables). These positive patch-level effects persisted with increasing shrub cover up to our maximum of 50% cover. Heavy grazing negatively affected most of the variables studied (average decline of 11%). It also altered, for some variables, how individual shrubs affected their sub-canopy environment with increasing shrub cover. Thus for species density, biomass and soil infiltration, the positive effect of individual shrubs with increasing shrub cover diminished under heavy grazing. Our study refines predictions of the effects of woody encroachment on ecosystem structure and functioning by showing that heavy grazing, rather than differences in shrub cover, explains the contrasting effects on ecosystem structure and function between individual shrubs and those in dense aggregations. We also discuss how species-specific traits of the encroaching species, such as their height or its ability to fix N, might influence the relationship between their patch-level effects and their cover within the landscape.

Do changes in grazing pressure and the degree of shrub encroachment alter the effects of individual shrubs on understorey plant communities and soil function?

PubMed Central

Soliveres, Santiago; Eldridge, David J.

2015-01-01

Summary Shrub canopies in semi-arid environments often produce positive effects on soil fertility, and on the richness and biomass of understorey plant communities. However, both positive and negative effects of shrub encroachment on plant and soil attributes have been reported at the landscape-level. The contrasting results between patch- and landscape-level effects in shrublands could be caused by differences in the degree of shrub encroachment or grazing pressure, both of which are likely to reduce the ability of individual shrubs to ameliorate their understorey environment. We examined how grazing and shrub encroachment (measured as landscape-level shrub cover) influence patch-level effects of shrubs on plant density, biomass and similarity in species composition between shrub understories and open areas, and on soil stability, nutrient cycling, and infiltration in two semi-arid Australian woodlands. Individual shrubs had consistently positive effects on all plant and soil variables (average increase of 23% for all variables). These positive patch-level effects persisted with increasing shrub cover up to our maximum of 50% cover. Heavy grazing negatively affected most of the variables studied (average decline of 11%). It also altered, for some variables, how individual shrubs affected their sub-canopy environment with increasing shrub cover. Thus for species density, biomass and soil infiltration, the positive effect of individual shrubs with increasing shrub cover diminished under heavy grazing. Synthesis Our study refines predictions of the effects of woody encroachment on ecosystem structure and functioning by showing that heavy grazing, rather than differences in shrub cover, explains the contrasting effects on ecosystem structure and function between individual shrubs and those in dense aggregations. We also discuss how species-specific traits of the encroaching species, such as their height or its ability to fix N, might influence the relationship between their patch-level effects and their cover within the landscape. PMID:25914435

Biogenic nitric oxide emission from a spruce forest soil in mountainous terrain

NASA Astrophysics Data System (ADS)

Falge, Eva; Bargsten, Anika; Behrendt, Thomas; Meixner, Franz X.

2010-05-01

The process-based spatial simulation model SVAT-CN was used to estimate biogenic nitric oxide (NO) emission by soils of a Norway spruce forest (Weidenbrunnen) in the Fichtelgebirge, Germany. SVAT-CN core is a combination of a multiple-layer soil water balance model and a multi-layered canopy gas exchange model. The soil modules comprise a flexible hybrid between a layered bucket model and classical basic liquid flow theory. Further soil processes include: heat transport, distribution of transpiration demand proportionally to soil resistance, reduction of leaf physiological parameters with limiting soil moisture. Spruce forest soils usually are characterized by a thick organic layer (raw humus), with the topmost centimetres being the location where most of the biogenic NO is produced. Within individual spruce forest stands the understory might be composed of patches characterized by different species (e.g. Vaccinium myrtillus, Picea abies, Deschampsia caespitosa), and NO production potentials. The effect of soil physical and chemical parameters and understory types on NO emission from the organic layer was investigated in laboratory incubation and fumigation experiments on soils sampled below the various understory covers found at the Weidenbrunnen site. Results from the laboratory experiments were used to parameterize multi-factorial regression models of soil NO emission with respect to its response to soil temperature and moisture. Parameterization of the spatial model SVAT-CN includes horizontal heterogeneity of over- and understory PAI, understory species distribution, soil texture, bulk density, thickness of organic layer. Simulations are run for intensive observations periods of 2007 and 2008 of the EGER (ExchanGE processes in mountainous Regions) project, a late summer/fall and an early summer period, providing estimates for different understory types (young spruce, blueberry, grass, and moss/litter patches). Validation of the model is being carried out at point scale, by comparison with measured soil moisture and temperature data at 12 locations at the Weidenbrunnen site. In addition model output is compared to soil NO emission data from dynamic chambers. Understory type was found to have a strong influence on the magnitude of soil NO emissions, with emissions from blueberry and young spruce one order of magnitude larger than those from grass or moss/litter patches.

Antecedent conditions influence soil respiration differences in shrub and grass patches

USDA-ARS?s Scientific Manuscript database

Quantifying the response of soil respiration to past environmental conditions is critical for predicting how future climate and vegetation change will impact ecosystem carbon balance. Increased shrub dominance in semiarid grasslands has potentially large effects on soil carbon cycling. The goal of t...

Natural 13C abundance: a tool to trace the incorporation of dung-derived carbon into soil particle-size fractions.

PubMed

Amelung, W; Bol, R; Friedrich, C

1999-01-01

During the decay of 13C enriched dung patches, the; delta 13C signal of surface soil (1-5 cm) increased with a temporary maximum after 42 d. To understand the underlying processes, we investigated the incorporation of dung-derived C into soil particle-size fractions. Dung, collected from beef steers fed on maize (delta 13C = -15.36/1000) or ryegrass (delta 13C = -25.67/1000), was applied in circular patches to a C3 pasture at North Wyke, UK. Triplicates were sampled from surface soil (1-5 cm) at 14, 28, 42, and 70 d after application, pooled, separated into fine (< 0.2 micron) and coarse clay (0.2-2 microns), silt plus fine sand (2-250 microns), and coarse sand (250-2000 microns), and analyzed for total C, N, and delta 13C. As particle-size diameter decreased, the C/N ratios decreased and delta 13C values increased at all plots due to increasing microbial alteration of soil organic matter. After dung application, ca. 60% of dung-derived C in soil was recovered in the 0.2-250 microns fractions during the whole experiment. The proportion of dung-derived C in the fine clay peaked 42 d after dung application, coinciding with the delta 13C maximum in the bulk soil and the maximum leaching rate measured in lysimeters at this time in another study at the same sites. The percentage of dung-derived C as particulate C in the coarse sand fraction increased until the end of the experiment. We conclude that incorporation of C into soil from decomposing dung patches involved both temporary sorption of leached dung C to < 0.2 micron fractions and continuous accumulation of particulate C (> 250 microns).

Effect of heat on soil color and pH of two forest soils.

Treesearch

Robert F. Tarrant

1953-01-01

Intensity of a slash burn is often judged by the change in soil color. Reddened or yellowed areas of soil and charred patches of organic litter are found on most burned areas, but such color changes are difficult to interpret. A study was therefore made to explore two questions: (1) At what temperature does the color of mineral soil change to the...

Declines in moose population density at Isle Royle National Park, MI, USA and accompanied changes in landscape patterns

USGS Publications Warehouse

De Jager, N. R.; Pastor, J.

2009-01-01

Ungulate herbivores create patterns of forage availability, plant species composition, and soil fertility as they range across large landscapes and consume large quantities of plant material. Over time, herbivore populations fluctuate, producing great potential for spatio-temporal landscape dynamics. In this study, we extend the spatial and temporal extent of a long-term investigation of the relationship of landscape patterns to moose foraging behavior at Isle Royale National Park, MI. We examined how patterns of browse availability and consumption, plant basal area, and soil fertility changed during a recent decline in the moose population. We used geostatistics to examine changes in the nature of spatial patterns in two valleys over 18 years and across short-range and long-range distance scales. Landscape patterns of available and consumed browse changed from either repeated patches or randomly distributed patches in 1988-1992 to random point distributions by 2007 after a recent record high peak followed by a rapid decline in the moose population. Patterns of available and consumed browse became decoupled during the moose population low, which is in contrast to coupled patterns during the earlier high moose population. Distributions of plant basal area and soil nitrogen availability also switched from repeated patches to randomly distributed patches in one valley and to random point distributions in the other valley. Rapid declines in moose population density may release vegetation and soil fertility from browsing pressure and in turn create random landscape patterns. ?? Springer Science+Business Media B.V. 2009.

[Amelioration of secondary bare alkali-saline patches in Songnen Plain through inserting cornstalk].

PubMed

He, Nianpeng; Wu, Ling; Jiang, Shicheng; Zhou, Daowei

2004-06-01

Based on the field experiment on Songnen grassland, a new method was established to ameliorate the secondary bare alkali-saline patches (SAP) through inserting cornstalk. The experiment was rested on the assumption that through inserting cornstalk in the secondary bare alkali-saline patches (SAP) to retain seeds moving over its surface, the necessary seed source could be gained; and these seeds should be able to germinate and survive successfully on the cornstalk itself or in its neighborhood, where should be more fit to grow than other sites in SAP, due to the decomposition of cornstalk and its special role, so that, the aim to restore vegetation of SAP could be achieved at a pretty low cost and rapid speed. The results showed that the seed bank in soil was increased significantly, owing to the inserted cornstalk and its operating processes. The seed number in ameliorated soil was 4020.0 +/- 1773.6 seeds x m(-2), while that in the secondary bare alkali-saline patches (SAP) was only 10.0 +/- 31.6 seeds x m(-2). Although the soil chemical and physical characters in ameliorated zone were improved to some extent, the overall situation of soil was still bad for plant growth, as the pH, soluble saline ion and organic matter were concerned. Most of Chloris virgata grew around or on the cornstalk, the plants around each cornstalk being 3.9 +/- 2.2, and the total being 48.64 +/- 38.72 g x m(-2). Therefore, this method demanded a few resources, and needed simple technology and low cost, which is potentially deserved to popularize.

Ripples in The Soil

NASA Image and Video Library

2004-02-10

This is a three-dimensional stereo anaglyph of an image taken by the front navigation camera onboard NASA Mars Exploration Rover Spirit, showing an interesting patch of rippled soil. 3D glasses are necessary to view this image.

Inferring local competition intensity from patch size distributions: a test using biological soil crusts

USGS Publications Warehouse

Bowker, Matthew A.; Maestre, Fernando T.

2012-01-01

Dryland vegetation is inherently patchy. This patchiness goes on to impact ecology, hydrology, and biogeochemistry. Recently, researchers have proposed that dryland vegetation patch sizes follow a power law which is due to local plant facilitation. It is unknown what patch size distribution prevails when competition predominates over facilitation, or if such a pattern could be used to detect competition. We investigated this question in an alternative vegetation type, mosses and lichens of biological soil crusts, which exhibit a smaller scale patch-interpatch configuration. This micro-vegetation is characterized by competition for space. We proposed that multiplicative effects of genetics, environment and competition should result in a log-normal patch size distribution. When testing the prevalence of log-normal versus power law patch size distributions, we found that the log-normal was the better distribution in 53% of cases and a reasonable fit in 83%. In contrast, the power law was better in 39% of cases, and in 8% of instances both distributions fit equally well. We further hypothesized that the log-normal distribution parameters would be predictably influenced by competition strength. There was qualitative agreement between one of the distribution's parameters (μ) and a novel intransitive (lacking a 'best' competitor) competition index, suggesting that as intransitivity increases, patch sizes decrease. The correlation of μ with other competition indicators based on spatial segregation of species (the C-score) depended on aridity. In less arid sites, μ was negatively correlated with the C-score (suggesting smaller patches under stronger competition), while positive correlations (suggesting larger patches under stronger competition) were observed at more arid sites. We propose that this is due to an increasing prevalence of competition transitivity as aridity increases. These findings broaden the emerging theory surrounding dryland patch size distributions and, with refinement, may help us infer cryptic ecological processes from easily observed spatial patterns in the field.

Red but not dead: examining microbial and plant recovery in severely burned soils

Treesearch

Marie Oliver; Jane Smith; Cassie Hebel

2010-01-01

Soil exposed to prolonged intense heat during a wildfire turns a distinctive red color. The heat volatilizes soil nutrients and kills subterranean microbial communities. Patches of severely burned red soil are found most frequently in areas that were heavily covered with down, dead wood before the fire. It has long been thought that exposure to such heat sterilized...

FIRE STUDIES IN MALLEE (EUCALYPTUS SPP.) COMMUNITIES OF WESTERN NEW SOUTH WALES: SPATIAL AND TEMPORAL FLUXES IN SOIL CHEMISTRY AND SOIL BIOLOGY FOLLOWING PRESCRIBED FIRE.

EPA Science Inventory

The effects of prescribed fires on nutrient pools, soil-organisms, and vegetation patch dynamics were studied in three semi-arid mallee shrublands in western New South Wales. Repeated sampling of surface soil strata (0-2 and 2-4 cm) was undertaken at strategic times (immediately ...

Mate choice when males are in patches: optimal strategies and good rules of thumb.

PubMed

Hutchinson, John M C; Halupka, Konrad

2004-11-07

In standard mate-choice models, females encounter males sequentially and decide whether to inspect the quality of another male or to accept a male already inspected. What changes when males are clumped in patches and there is a significant cost to travel between patches? We use stochastic dynamic programming to derive optimum strategies under various assumptions. With zero costs to returning to a male in the current patch, the optimal strategy accepts males above a quality threshold which is constant whenever one or more males in the patch remain uninspected; this threshold drops when inspecting the last male in the patch, so returns may occur only then and are never to a male in a previously inspected patch. With non-zero within-patch return costs, such a two-threshold rule still performs extremely well, but a more gradual decline in acceptance threshold is optimal. Inability to return at all need not decrease performance by much. The acceptance threshold should also decline if it gets harder to discover the last males in a patch. Optimal strategies become more complex when mean male quality varies systematically between patches or years, and females estimate this in a Bayesian manner through inspecting male qualities. It can then be optimal to switch patch before inspecting all males on a patch, or, exceptionally, to return to an earlier patch. We compare performance of various rules of thumb in these environments and in ones without a patch structure. A two-threshold rule performs excellently, as do various simplifications of it. The best-of-N rule outperforms threshold rules only in non-patchy environments with between-year quality variation. The cutoff rule performs poorly.

Marks of Laser Exam on Martian Soil

NASA Image and Video Library

2012-08-30

The Chemistry and Camera ChemCam instrument on NASA Mars rover Curiosity used its laser to examine side-by-side points in a target patch of soil, leaving the marks apparent in this before-and-after comparison.

The effect of Piper aduncum invasion on soil in tropical ecosystems of Papua New Guinea

NASA Astrophysics Data System (ADS)

Kukla, Jaroslav; Frouz, Jan

2017-04-01

Piper aduncum is successful Neotropical invasive species in Papua New Guinea. Despite its interaction with aboveground part of ecosystem has been extensively studied little is known about its effect on soil. Here we report two studies, in first we compare soil chemistry and soil biota in sites invaded and non-invaded by P. aduncum near Wanang village. In other study we use benefit of previous experiment when P. aduncum was experimentally removed near Ohu village. Here we compare soil chemistry and chemistry of plant leaves growing in garden originating by slashing and burning two adjacent patches with and without P. aduncum. Soil under P. aduncum had significantly less phosphorus in 0-5 cm soil layer and less nitrates, nitrogen and carbon in 5-10 cm soil layer than soil in old gardens uninvaded by P. aduncum. P. aduncum soil also harbors fewer microfloras than uninvaded soil as shown by PLFA analysis. No difference was found in fauna communities. Gardens created on patches where old P. aduncum was removed did not differ in soil chemistry from plots which were overgrown by P. aduncum, but leaves of sweet potatoes (Ipomoea batatas) in gardens where P. aduncum was previously removed contained more nitrogen. Results suggest that P. aduncum invasion may affect some chemical and microbial properties in invaded soil. P. aduncum has negative effect on traditional shifting agriculture.

Mosaic stunting in bareroot Pinus banksiana seedlings is unrelated to colonization by mycorrhizal fungi

Treesearch

Lynette R. Potvin; Martin F. Jurgensen; R. Kasten Dumroese; Dana L. Richter; Deborah S. Page-Dumroese

2014-01-01

Mosaic stunting, the occurrence of random patches of chlorotic seedlings with reduced shoot and diameter growth amidst more robust cohorts within bareroot nurseries, is classically associated with poor colonization by mycorrhizal fungi. We examined possible relationships among soil fertility, mycorrhizas, and random patches of mosaic stunting in bareroot Pinus...

Oak woodland vegetation dynamics: a state and transition approach

Treesearch

Melvin R. George; Maximo F. Alonso

2008-01-01

California’s oak-woodlands are a complex, often multi-layered mosaic of grassland, shrubland, and woodland patches. While soil type and depth, topography, aspect, and geological substrate influence the distribution of these patches, disturbance and biological interactions are also important determinants of the patchy distribution of these plant communities. Fire...

Understory vegetation and site factors : implications for a managed Wisconsin landscape

Treesearch

K.D. Brosofske; J. Chen; Thomas R. Crow

2001-01-01

We investigated relationships between edaphic and environmental factors (soil, forest floor, topography, and canopy) and understory vegetation (composition, richness, and Shannon-Wiener diversity index, H')among 77 plots representing seven major patch types comprising a landscape in northern Wisconsin that has a long history of human management. Sampled patch...

Influences of Moisture Regimes and Functional Plant Types on Nutrient Cycling in Permafrost Regions

NASA Astrophysics Data System (ADS)

McCaully, R. E.; Arendt, C. A.; Newman, B. D.; Heikoop, J. M.; Wilson, C. J.; Sevanto, S.; Wales, N. A.; Wullschleger, S.

2017-12-01

In the permafrost-dominated Arctic, climatic feedbacks exist between permafrost, soil moisture, functional plant type and presence of nutrients. Functional plant types present within the Arctic regulate and respond to changes in hydrologic regimes and nutrient cycling. Specifically, alders are a member of the birch family that use root nodules to fix nitrogen, which is a limiting nutrient strongly linked to fertilizing Arctic ecosystems. Previous investigations in the Seward Peninsula, AK show elevated presence of nitrate within and downslope of alder patches in degraded permafrost systems, with concentrations an order of magnitude greater than that of nitrate measured above these patches. Further observations within these degraded permafrost systems are crucial to assess whether alders are drivers of, or merely respond to, nitrate fluxes. In addition to vegetative feedbacks with nitrate supply, previous studies have also linked low moisture content to high nitrate production. Within discontinuous permafrost regions, the absence of permafrost creates well-drained regions with unsaturated soils whereas the presence of permafrost limits vertical drainage of soil-pore water creating elevated soil moisture content, which likely corresponds to lower nitrate concentrations. We investigate these feedbacks further in the Seward Peninsula, AK, through research supported by the United States Department of Energy Next Generation Ecosystem Experiment (NGEE) - Arctic. Using soil moisture and thaw depth as proxies to determine the extent of permafrost degradation, we identify areas of discontinuous permafrost over a heterogeneous landscape and collect co-located soilwater chemistry samples to highlight the complex relationships that exist between alder patches, soil moisture regimes, the presence of permafrost and available nitrate supply. Understanding the role of nitrogen in degrading permafrost systems, in the context of both vegetation present and soil moisture, is crucial to understand the impacts of a warming climate on biogeochemical cycling in permafrost regions.

Variations in Soft Soil of Troy False Color

NASA Image and Video Library

2009-06-25

The soft soil exposed when wheels of NASA Mars Exploration Rover Spirit dug into a patch of ground dubbed Troy exhibit variations in hue visible in this image, in which the colors have been stretched to emphasize the differences.

Nitrate Attenuation Pathways and Capacity in Urban Wetlands of Phoenix, Arizona.

NASA Astrophysics Data System (ADS)

Handler, A. M.; Suchy, A. K.; Grimm, N. B.; Palta, M.; Childers, D. L.; Stromberg, J. C.

2016-12-01

In the urban Salt River channel of Phoenix, Arizona, stormwater pipes collect urban runoff that drains directly into the dry river bed, providing a new water source that sustains perennial wetlands. Water delivered by storm drains is enriched in nitrogen, particularly nitrate (NO3-), a common surface-water pollutant. However, these systems are not planned nor are they actively managed to reduce nitrogen loads. We investigated the microbial capacity of these wetlands to reduce nitrate concentrations by examining surface-water (SW) and subsurface porewater (PW) chemistry and conducting soil incubations from dominant wetland vegetation patches. Nitrate was higher in SW than PW (mean ± S.E.: 0.23 ± 0.05 vs. 0.03 ± 0.01 ppm N-NO3-) while ammonium (NH4+) was the opposite (0.11 ± 0.02 vs. 0.47 ± 0.10 ppm N-NH4+). Dissolved organic carbon (DOC) was abundant throughout the wetland (6.0 ± 0.9 ppm), but was significantly higher in vegetated patches compared to non-vegetated patches (t-test: p=0.04). These data indicate conditions that support microbial NO3- reduction persists, especially in vegetated patches. Laboratory incubations of wetland soil treated with a high (7 ppm) and low (1 ppm) dose of NO3- consumed 0.191 ± 0.022 and 0.019 ± 0.005 mg N-NO3- hr-1 kg wet soil-1, respectively. A best-fit model showed incubations with a higher starting NO3- concentration had a higher NO3- loss rate (standardized β=0.10 ± 0.01, p<0.001) and incubations from vegetated patches had a higher NO3- loss rate than those from open patches (β=0.02 ± 0.01, p=0.003). Across patches, NH4+ increased in the high treatment incubations (t-test: p<0.001), potentially indicating the presence of dissimilatory nitrate reduction to ammonium (DNRA). These results suggest the wetlands have the capacity to both remove nitrogen via denitrification and retain it via DNRA. This study indicates unplanned, unmanaged urban wetland systems have a high capacity to attenuate NO3- delivered from the urban landscape.

Response of respiration and nutrient availability to drying and rewetting in soil from a semi-arid woodland depends on vegetation patch and a recent wild fire

NASA Astrophysics Data System (ADS)

Sun, Q.; Meyer, W. S.; Koerber, G.; Marschner, P.

2015-06-01

Semi-arid woodlands, which are characterised by patchy vegetation interspersed with bare, open areas, are frequently exposed to wild fire. During summer, long dry periods are occasionally interrupted by rainfall events. It is well-known that rewetting of dry soil induces a flush of respiration. However, the magnitude of the flush may differ between vegetation patches and open areas because of different organic matter content which could be further modulated by wild fire. Soils were collected from under trees, under shrubs or in open areas in unburnt and burnt sandy Mallee woodland, where part of the woodland experienced a wild fire which destroyed or damaged most of the aboveground plant parts four months before sampling. In an incubation experiment, the soils were exposed to two moisture treatments: constantly moist (CM) and drying and rewetting (DRW). In CM, soils were incubated at 80% of maximum water holding capacity for 19 days; In DRW, soils were dried for four days, kept dry for another five days, then rewet to 80% WHC and maintained at this water content until day 19. Soil respiration decreased during drying and was very low in the dry period; rewetting induced a respiration flush. Compared to soil under shrubs and in open areas, cumulative respiration per g soil in CM and DRW was greater under trees, but lower when expressed per g TOC. Organic matter content, available P, and microbial biomass C, but not available N were greater under trees than in open areas. Wild fire decreased the flush of respiration per g TOC in the open areas and under shrubs, and reduced TOC and MBC concentrations only under trees, but had little effect on available N and P concentrations. We conclude that of the impact wild fire and DRW events on nutrient cycling differ among vegetation patches of a native semiarid woodland which is related to organic matter amount and availability.

Plant root proliferation in nitrogen-rich patches confers competitive advantage

PubMed Central

Robinson, D.; Hodge, A.; Griffiths, B. S.; Fitter, A. H.

1999-01-01

Plants respond strongly to environmental heterogeneity, particularly below ground, where spectacular root proliferations in nutrient-rich patches may occur. Such 'foraging' responses apparently maximize nutrient uptake and are now prominent in plant ecological theory. Proliferations in nitrogen-rich patches are difficult to explain adaptively, however. The high mobility of soil nitrate should limit the contribution of proliferation to N capture. Many experiments on isolated plants show only a weak relation between proliferation and N uptake. We show that N capture is associated strongly with proliferation during interspecific competition for finite, locally available, mixed N sources, precisely the conditions under which N becomes available to plants on generally infertile soils. This explains why N-induced root proliferation is an important resource-capture mechanism in N-limited plant communities and suggests that increasing proliferation by crop breeding or genetic manipulation will have a limited impact on N capture by well-fertilized monocultures.

DisPATCh as a tool to evaluate coarse-scale remotely sensed soil moisture using localized in situ measurements: Application to SMOS and AMSR-E data in Southeastern Australia

NASA Astrophysics Data System (ADS)

Malbéteau, Yoann; Merlin, Olivier; Molero, Beatriz; Rüdiger, Christoph; Bacon, Stephan

2016-03-01

Validating coarse-scale satellite soil moisture data still represents a big challenge, notably due to the large mismatch existing between the spatial resolution (> 10 km) of microwave radiometers and the representativeness scale (several m) of localized in situ measurements. This study aims to examine the potential of DisPATCh (Disaggregation based on Physical and Theoretical scale Change) for validating SMOS (Soil Moisture and Ocean Salinity) and AMSR-E (Advanced Microwave Scanning Radiometer-Earth observation system) level-3 soil moisture products. The ∽40-50 km resolution SMOS and AMSR-E data are disaggregated at 1 km resolution over the Murrumbidgee catchment in Southeastern Australia during a one year period in 2010-2011, and the satellite products are compared with the in situ measurements of 38 stations distributed within the study area. It is found that disaggregation improves the mean difference, correlation coefficient and slope of the linear regression between satellite and in situ data in 77%, 92% and 94% of cases, respectively. Nevertheless, the downscaling efficiency is lower in winter than during the hotter months when DisPATCh performance is optimal. Consistently, better results are obtained in the semi-arid than in a temperate zone of the catchment. In the semi-arid Yanco region, disaggregation in summer increases the correlation coefficient from 0.63 to 0.78 and from 0.42 to 0.71 for SMOS and AMSR-E in morning overpasses and from 0.37 to 0.63 and from 0.47 to 0.73 for SMOS and AMSR-E in afternoon overpasses, respectively. DisPATCh has strong potential in low vegetated semi-arid areas where it can be used as a tool to evaluate coarse-scale remotely sensed soil moisture by explicitly representing the sub-pixel variability.

Spatial heterogeneity of physicochemical properties explains differences in microbial composition in arid soils from Cuatro Cienegas, Mexico.

PubMed

Pajares, Silvia; Escalante, Ana E; Noguez, Ana M; García-Oliva, Felipe; Martínez-Piedragil, Celeste; Cram, Silke S; Eguiarte, Luis Enrique; Souza, Valeria

2016-01-01

Arid ecosystems are characterized by high spatial heterogeneity, and the variation among vegetation patches is a clear example. Soil biotic and abiotic factors associated with these patches have also been well documented as highly heterogeneous in space. Given the low vegetation cover and little precipitation in arid ecosystems, soil microorganisms are the main drivers of nutrient cycling. Nonetheless, little is known about the spatial distribution of microorganisms and the relationship that their diversity holds with nutrients and other physicochemical gradients in arid soils. In this study, we evaluated the spatial variability of soil microbial diversity and chemical parameters (nutrients and ion content) at local scale (meters) occurring in a gypsum-based desert soil, to gain knowledge on what soil abiotic factors control the distribution of microbes in arid ecosystems. We analyzed 32 soil samples within a 64 m(2) plot and: (a) characterized microbial diversity using T-RFLPs of the bacterial 16S rRNA gene, (b) determined soil chemical parameters, and (c) identified relationships between microbial diversity and chemical properties. Overall, we found a strong correlation between microbial composition heterogeneity and spatial variation of cations (Ca(2), K(+)) and anions (HCO[Formula: see text], Cl(-), SO[Formula: see text]) content in this small plot. Our results could be attributable to spatial differences of soil saline content, favoring the patchy emergence of salt and soil microbial communities.

Alternative Reproductive Tactics in the Shell-Brooding Lake Tanganyika Cichlid Neolamprologus brevis

PubMed Central

Ota, Kazutaka; Aibara, Mitsuto; Morita, Masaya; Awata, Satoshi; Hori, Michio; Kohda, Masanori

2012-01-01

Alternative reproductive tactics (ARTs) are found in several Lake Tanganyika shell-brooding cichlids. Field studies were conducted in the Wonzye population to examine reproductive ecology and ARTs in the Lake Tanganyika shell-brooding cichlid Neolamprologus brevis. We discovered that this fish occurred in both rocky- and sandy-bottom habitats, but in rocky habitats, brood-caring females exclusively occurred in shell-patches that another cichlid species created. All N. brevis of both sexes in the patches were sexually mature, whereas immature males and females with unripe eggs were found frequently in sandy-bottom habitats. Males in sandy-bottom habitats were smaller, but fed more frequently and were in better somatic condition than males in the patches. Similar tendency was found in females. This indicates that N. brevis uses different habitats depending on the stage of its life history, with migration from sandy-bottom habitats to the shell-patches for reproduction. Males in the patches exhibited different behavior patterns: floating above the patches and lying in the patches. The former was larger, more aggressive, and invested less in gonads (relative to body size) than the latter. These results accord with those of other shell-brooding Lake Tanganyika cichlids with ARTs, and they therefore suggest the presence of ARTs in N. brevis. PMID:22888463

Mortality hotspots: nitrogen cycling in forest soils during vertebrate decomposition

USDA-ARS?s Scientific Manuscript database

Decomposing plants and animals fundamentally transform their surrounding environments, and serve as a critical source of limiting nutrients for macro- and micro-fauna. Animal mortality hotspots alter soil biogeochemical cycles, and these natural ephemeral nutrient patches are important for maintaini...

The effects of landscape cover on surface soils in a low density residential neighborhood in Baltimore, Maryland

Treesearch

Ian D. Yesilonis; R. V. Pouyat; J. Russell-Anelli; E. Powell

2016-01-01

Previous studies at the scale of a city have shown that surface soil nutrients, pH, and soil organic matter (SOM) can vary by land cover, land use, and management. This study was conducted in Baltimore County, Maryland, to quantify the differences in characteristics of soil in a residential neighborhood and adjacent forest patch sampling at a fine scale. The first...

Woody vegetation and soil characteristics of residential forest patches and open spaces along an urban-to-rural gradient

Treesearch

Benjamin L. Reichert; Sharon R. Jean-Philippe; Christopher Oswalt; Jennifer Franklin; Mark Radosevich

2015-01-01

As the process of urbanization advances across the country, so does the importance of urban forests, which include both trees and the soils in which they grow. Soil microbial biomass, which plays a critical role in nutrient transformation in urban ecosystems, is affected by factors such as soil type and the availability of water, carbon, and nitrogen. The aim of this...

Complications of oral exposure to fentanyl transdermal delivery system patches.

PubMed

Prosser, Jane M; Jones, Brent E; Nelson, Lewis

2010-12-01

Fentanyl is a synthetic opioid available therapeutically as an intravenous, transbucal, or transdermal preparation. It is also used as a drug of abuse through a variety of different methods, including the oral abuse of transdermal fentanyl patches. This is a series of patients with oral fentanyl patch exposure reported to our center and represents the first series of oral fentanyl patch exposures collected outside of the postmortem setting. In this series, we examined the New York Poison Control Center database for all cases of oral abuse of fentanyl reported between January 2000 and April 2008. Twenty cases were reported, nine were asymptomatic or had symptoms of opioid withdrawal; 11 had symptoms of opioid intoxication. Eight patients were administered naloxone and all showed improvement in clinical status. Only one case resulted in a confirmed fatality-this patient had an orally adherent patch discovered at intubation. Oral exposure may result in life-threatening toxicity. Patients should be closely assessed and monitored for the opioid toxidrome, and if symptomatic, should be managed with opioid antagonists and ventilatory support.

Identification and testing of early indicators for N leaching from urine patches.

PubMed

Vogeler, Iris; Cichota, Rogerio; Snow, Val

2013-11-30

Nitrogen leaching from urine patches has been identified as a major source of nitrogen loss under intensive grazing dairy farming. Leaching is notoriously variable, influenced by management, soil type, year-to-year variation in climate and timing and rate of urine depositions. To identify early indicators for the risk of N leaching from urine patches for potential usage in a precision management system, we used the simulation model APSIM (Agricultural Production Systems SIMulator) to produce an extensive N leaching dataset for the Waikato region of New Zealand. In total, nearly forty thousand simulation runs with different combinations of soil type and urine deposition times, in 33 different years, were done. The risk forecasting indicators were chosen based on their practicality: being readily measured on farm (soil water content, temperature and pasture growth) or that could be centrally supplied to farms (such as actual and forecast weather data). The thresholds of the early indicators that are used to forecast a period for high risk of N leaching were determined via classification and regression tree analysis. The most informative factors were soil temperature, pasture dry matter production, and average soil water content in the top soil over the two weeks prior to the urine N application event. Rainfall and air temperature for the two weeks following urine deposition were also important to fine-tune the predictions. The identified early indicators were then tested for their potential to predict the risk of N leaching in two typical soils from the Waikato region in New Zealand. The accuracy of the predictions varied with the number of indicators, the soil type and the risk level, and the number of correct predictions ranged from about 45 to over 90%. Further expansion and fine-tuning of the indicators and the development of a practical N risk tool based on these indicators is needed. Copyright © 2013 Elsevier Ltd. All rights reserved.

Churned-Up Rocky Debris and Dust (False Color)

NASA Technical Reports Server (NTRS)

2005-01-01

NASA's Mars Exploration Rover Spirit has been analyzing sulfur-rich rocks and surface materials in the 'Columbia Hills' in Gusev Crater on Mars. This image shows rocky debris and dust, which planetary scientists call 'regolith' or 'soil,' that has been churned up by the rover wheels. This 40-centimeter-wide (16-inch-wide) patch of churned-up dirt, nicknamed 'Paso Robles,' contains brighter patches measured to be high in sulfur by Spirit's alpha particle X-ray Spectrometer. Spirit's panoramic camera took this false-color image on martian day, or sol, 400 (Feb. 16, 2005), using filters at wavelengths of 750, 530, and 430 nanometers. Darker red hues in the image correspond to greater concentrations of oxidized soil and dust. Whiter and bluer hues correspond to sulfur-rich deposits that are not as heavily coated with soils or are not as highly oxidized.

Energy state affects exploratory behavior of tree sparrows in a group context under differential food-patch distributions.

PubMed

Lee, Ya-Fu; Kuo, Yen-Min; Chu, Wen-Chen

2016-01-01

When facing a novel situation, animals can retreat or leave to avoid risks, but will miss potential resources and opportunities. Alternatively they may reduce environmental uncertainty by exploration, while risking no energy rewards and exposure to hazards, and use the information retrieved for subsequent decision making. When exploring, however, animals may adopt different tactics according to individual states. We tested that energy states will affect exploratory behavior by experimenting with wild-caught untrained Eurasian tree sparrows ( Passer montanus ) in fasted or fed states exploring in a novel space with hidden food supply in different patch distribution patterns. Our data revealed that fasted sparrows risked being earlier explorers more often, initiated more exploratory bouts before patches were found, and stayed longer on the ground under both patch patterns. Fasted sparrows discovered more patches and consumed more food than fed sparrows in dispersed, but not necessary so in clumped, patch patterns; whereas fed birds also increased patch finding to a certain level in dispersed patterns. Sparrows of both energy states, however, did not differ in feeding rates in either patch pattern. Exploratory behavior of tree sparrows is state-dependent, which supports our prediction that birds with an energy shortage will be risk-prone and explore more readily. Our study also indicates a game nature of tree sparrow exploratory behavior in a group context when explorers are in different energy states and are exposed to different patch distributions. Birds of lower energy state adopting an active exploring tactic may be favored by obtaining higher energy gains in dispersed patch patterns with lower patch richness. More satiated birds, however, achieved a similar feeding rate by lowered exposure time.

Patch Transporter: Incentivized, Decentralized Software Patch System for WSN and IoT Environments

PubMed Central

Lee, JongHyup

2018-01-01

In the complicated settings of WSN (Wireless Sensor Networks) and IoT (Internet of Things) environments, keeping a number of heterogeneous devices updated is a challenging job, especially with respect to effectively discovering target devices and rapidly delivering the software updates. In this paper, we convert the traditional software update process to a distributed service. We set an incentive system for faithfully transporting the patches to the recipient devices. The incentive system motivates independent, self-interested transporters for helping the devices to be updated. To ensure the system correctly operates, we employ the blockchain system that enforces the commitment in a decentralized manner. We also present a detailed specification for the proposed protocol and validate it by model checking and simulations for correctness. PMID:29438337

Patch Transporter: Incentivized, Decentralized Software Patch System for WSN and IoT Environments.

PubMed

Lee, JongHyup

2018-02-13

[-12]In the complicated settings of WSN (Wireless Sensor Networks) and IoT (Internet of Things) environments, keeping a number of heterogeneous devices updated is a challenging job, especially with respect to effectively discovering target devices and rapidly delivering the software updates. In this paper, we convert the traditional software update process to a distributed service. We set an incentive system for faithfully transporting the patches to the recipient devices. The incentive system motivates independent, self-interested transporters for helping the devices to be updated. To ensure the system correctly operates, we employ the blockchain system that enforces the commitment in a decentralized manner. We also present a detailed specification for the proposed protocol and validate it by model checking and simulations for correctness.

Response of forest soil properties to urbanization gradients in three metropolitan areas

Treesearch

Richard V. Pouyat; Ian D. Yesilonis; Katalin Szlavecz; Csaba Csuzdi; Elizabeth Hornung; Zoltan Kors& #243; s; Jonathan Russell-Anelli; Vincent Giorgio

2008-01-01

We investigated the effects of urban environments on the chemical properties of forest soils in the metropolitan areas of Baltimore, New York, and Budapest. We hypothesized that soils in forest patches in each city will exhibit changes in chemistry corresponding to urbanization gradients, but more strongly with various urban metrics than distance to the urban core....

Spatiotemporal dynamics of wetted soils across a polar desert landscape

DOE PAGES

Langford, Zachary L.; Gooseff, Michael N.; Lampkin, Derrick J.

2014-10-30

Liquid water is scarce across the landscape of the McMurdo Dry Valleys (MDV), Antarctica, a 3800 km 2 ice-free region, and is chiefly associated with soils that are adjacent to streams and lakes (i.e. wetted margins) during the annual thaw season. However, isolated wetted soils have been observed at locations distal from water bodies. The source of water for the isolated patches of wet soil is potentially generated by a combination of infiltration from melting snowpacks, melting of pore ice at the ice table, and melting of buried segregation ice formed during winter freezing. In this paper, high resolution remotemore » sensing data gathered several times per summer in the MDV region were used to determine the spatial and temporal distribution of wet soils. The spatial consistency with which the wet soils occurred was assessed for the 2009–10 to 2011–12 summers. The remote sensing analyses reveal that cumulative area and number of wet soil patches varies among summers. The 2010–11 summer provided the most wetted soil area (10.21 km 2) and 2009–10 covered the least (5.38 km 2). Finally, these data suggest that wet soils are a significant component of the MDV cold desert land system and may become more prevalent as regional climate changes.« less

Differential effects of lichens, mosses and grasses on respiration and nitrogen mineralization in soils of the New Jersey Pinelands.

PubMed

Sedia, Ekaterina G; Ehrenfeld, Joan G

2005-06-01

In the New Jersey Pinelands, severely disturbed areas often do not undergo a rapid succession to forest; rather, a patchy cover of lichens, mosses and grasses persists for decades. We hypothesized that these plant covers affect soil microbial processes in different ways, and that these effects may alter the successional dynamics of the patches. We predicted that the moss and grass covers stimulate soil microbial activity, whereas lichens inhibit it, which may in turn inhibit succession. We collected soil cores from beneath each type of cover plus bare soil within two types of highly disturbed areas--sites subjected to hot wildfires, and areas mined for sand. Organic matter (OM) content, soil respiration and potential N mineralization were measured in the cores. Soils under mosses were similar to those under grasses; they accumulated more OM and produced more mineral N, predominantly in the form of ammonium, than either the bare soils or the soils beneath lichens. Mineralization under lichens, like that of the bare soils but unlike the soils beneath mosses or grasses, was dominated by net nitrification. These patterns were reproduced in experimentally transplanted moss and lichen mats. Mosses appear to create high-nutrient microsites via high rates of OM accumulation and production of ammonium, whereas lichens maintain low-nutrient patches similar to bare soil via low OM accumulation rates and production of mineral N predominantly in the mobile nitrate form. These differences in soil properties may explain the lack of vascular plant invasion in lichen mats, in contrast to the moss-dominated areas.

Land-use changes in Illinois, USA: The influence of landscape attributes on current and historic land use

Treesearch

Louis R. Iverson; Louis R. Iverson

1988-01-01

The Illinois Geographic Information System was used to compare the soil and landscape attributes of the State with its historic vegetation, current land use, and patterns of land-use change over the past 160 years. Patch structural characteristics among land types in four geographic zones were also compared. The assessment of patch characteristics revealed a highly...

Stability of a family of uniform vortices related to vortex configurations before merging

NASA Astrophysics Data System (ADS)

Luzzatto-Fegiz, P.; Williamson, C. H. K.

2006-11-01

Motivated by the merger of two corotating vortices, Cerretelli & Williamson (JFM 2003) discovered a family of uniform vorticity patches representing the continuation of two corotating vortices into a single ``dumbbell'' shape. This branch of solutions passes through a bifurcation from the Kirchhoff ellipses (discovered by Kamm 1987 and Saffman 1988) and ends into a cat's eye shape. By using a more accurate method for equilibrium shape calculation, we find some differences in the equilibrium shapes to those discovered by Cerretelli & Williamson, particularly near the topological change (from a two-vortex to a single vortex shape). We implement the approach of Dritschel (1985), and show that all the simply connected shapes are unstable to a three-fold perturbation, while a regime of the two-vortex shapes nearing the topological change is unstable to a two-fold antisymmetric perturbation. The stability of two patches has been source of debate in the literature. Saffman & Szeto (1980) predicted exchange of stability at an extremum in energy and angular momentum; on the other hand, Dritschel (1985) found that conditions for instability from linear analysis did not match those coming from the energy criterion. In the present work, we find precise agreement between results from linear analysis and energy criterion, in accordance with the more recent work of Kamm (1987) and Dritschel (1995).

The Role of Biological Soil Crusts in Nitrogen Cycling and Soil Deflation in West Greenland

NASA Astrophysics Data System (ADS)

Heindel, R. C.; Governali, F. C.; Spickard, A. M.; Virginia, R. A.

2017-12-01

Although shrub expansion has been observed across the Arctic in moist tundra habitat, shrubs may be prevented from expanding in arid Arctic regions due to low soil moisture or soil erosion. This may be the case in Kangerlussuaq, West Greenland, where katabatic winds off the Greenland Ice Sheet have eroded distinct patches of mixed shrub tundra, resulting in nearly barren low productivity areas dominated by biological soil crusts (biocrusts) and graminoids. The future trajectory of these bare patches - persisting in a low biomass state or returning to a shrub-dominated state - depends on the role of the biocrust as either a long-term landscape cover limiting revegetation or as a successional facilitator. Prior to this study, little was known about the physical and ecological development of West Greenland biocrusts and how they may influence future vegetation dynamics. We found that biocrusts took 230 ± 48 years to fully develop, and that later stages of biocrust development were related to increased thickness and penetration resistance and decreased soil moisture, factors limiting shrub seedling establishment. The nitrogen (N) fixing lichen Stereocaulon sp. was found throughout the study region at all stages of biocrust development. Natural 15N abundance suggests that Stereocaulon sp. obtains about half of its N from biological fixation, and that some biologically-fixed N is incorporated into the underlying soils over time. Although soil N and C concentrations increased slightly with biocrust development, their levels under the most developed biocrusts remained low compared to the surrounding shrub and graminoid tundra. Our results suggest that deflation patches, triggered by long-term variations in climate, may remain in a low-productivity ecosystem state for hundreds to thousands of years, if precipitation and temperature regimes do not dramatically alter the vegetation potential of the region. However, if future climate change in the Arctic favors greater primary production, and the rate of soil deflation declines, then the productivity of the Kangerlussuaq tundra could increase, favoring a transition to a more vegetated and shrub-dominated landscape.

Response of respiration and nutrient availability to drying and rewetting in soil from a semi-arid woodland depends on vegetation patch and a recent wildfire

NASA Astrophysics Data System (ADS)

Sun, Q.; Meyer, W. S.; Koerber, G. R.; Marschner, P.

2015-08-01

Semi-arid woodlands, which are characterised by patchy vegetation interspersed with bare, open areas, are frequently exposed to wildfire. During summer, long dry periods are occasionally interrupted by rainfall events. It is well known that rewetting of dry soil induces a flush of respiration. However, the magnitude of the flush may differ between vegetation patches and open areas because of different organic matter content, which could be further modulated by wildfire. Soils were collected from under trees, under shrubs or in open areas in unburnt and burnt sandy mallee woodland, where part of the woodland experienced a wildfire which destroyed or damaged most of the aboveground plant parts 4 months before sampling. In an incubation experiment, the soils were exposed to two moisture treatments: constantly moist (CM) and drying and rewetting (DRW). In CM, soils were incubated at 80 % of maximum water holding capacity (WHC) for 19 days; in DRW, soils were dried for 4 days, kept dry for another 5 days, then rewetted to 80 % WHC and maintained at this water content until day 19. Soil respiration decreased during drying and was very low in the dry period; rewetting induced a respiration flush. Compared to soil under shrubs and in open areas, cumulative respiration per gram of soil in CM and DRW was greater under trees, but lower when expressed per gram of total organic carbon (TOC). Organic matter content, available P, and microbial biomass C, but not available N, were greater under trees than in open areas. Wild fire decreased the flush of respiration per gram of TOC in the open areas and under shrubs, and reduced TOC and microbial biomass C (MBC) concentrations only under trees, but had little effect on available N and P concentrations. We conclude that the impact of wildfire and DRW events on nutrient cycling differs among vegetation patches of a native semi-arid woodland which is related to organic matter amount and availability.

Utilization of organic nitrogen by arbuscular mycorrhizal fungi-is there a specific role for protists and ammonia oxidizers?

PubMed

Bukovská, Petra; Bonkowski, Michael; Konvalinková, Tereza; Beskid, Olena; Hujslová, Martina; Püschel, David; Řezáčová, Veronika; Gutiérrez-Núñez, María Semiramis; Gryndler, Milan; Jansa, Jan

2018-04-01

Arbuscular mycorrhizal (AM) fungi can significantly contribute to plant nitrogen (N) uptake from complex organic sources, most likely in concert with activity of soil saprotrophs and other microbes releasing and transforming the N bound in organic forms. Here, we tested whether AM fungus (Rhizophagus irregularis) extraradical hyphal networks showed any preferences towards certain forms of organic N (chitin of fungal or crustacean origin, DNA, clover biomass, or albumin) administered in spatially discrete patches, and how the presence of AM fungal hyphae affected other microbes. By direct 15 N labeling, we also quantified the flux of N to the plants (Andropogon gerardii) through the AM fungal hyphae from fungal chitin and from clover biomass. The AM fungal hyphae colonized patches supplemented with organic N sources significantly more than those receiving only mineral nutrients, organic carbon in form of cellulose, or nothing. Mycorrhizal plants grew 6.4-fold larger and accumulated, on average, 20.3-fold more 15 N originating from the labeled organic sources than their nonmycorrhizal counterparts. Whereas the abundance of microbes (bacteria, fungi, or Acanthamoeba sp.) in the different patches was primarily driven by patch quality, we noted a consistent suppression of the microbial abundances by the presence of AM fungal hyphae. This suppression was particularly strong for ammonia oxidizing bacteria. Our results indicate that AM fungi successfully competed with the other microbes for free ammonium ions and suggest an important role for the notoriously understudied soil protists to play in recycling organic N from soil to plants via AM fungal hyphae.

Thin scale ecohydrological data and relations at semi-arid regions: a methodological approach

USDA-ARS?s Scientific Manuscript database

In semi-arid regions worldwide the vegetation is organized in patches surrounded by bare soil with marked differences in their soil properties that play important roles in runoff and infiltration. Chihuahuan-Sonoran and Patagonian Monte deserts regions show floristic similarity greater than that ex...

Climate interacts with soil to produce beta diversity in Californian plant communities.

PubMed

Fernandez-Going, B M; Harrison, S P; Anacker, B L; Safford, H D

2013-09-01

Spatially distinct communities can arise through interactions and feedbacks between abiotic and biotic factors. We suggest that, for plants, patches of infertile soils such as serpentine may support more distinct communities from those in the surrounding non-serpentine matrix in regions where the climate is more productive (i.e., warmer and/or wetter). Where both soil fertility and climatic productivity are high, communities may be dominated by plants with fast-growing functional traits, whereas where either soils or climate impose low productivity, species with stress-tolerant functional traits may predominate. As a result, both species and functional composition may show higher dissimilarity between patch and matrix in productive climates. This pattern may be reinforced by positive feedbacks, in which higher plant growth under favorable climate and soil conditions leads to higher soil fertility, further enhancing plant growth. For 96 pairs of sites across a 200-km latitudinal gradient in California, we found that the species and functional dissimilarities between communities on infertile serpentine and fertile non-serpentine soils were higher in more productive (wetter) regions. Woody species had more stress-tolerant functional traits on serpentine than non-serpentine soil, and as rainfall increased, woody species functional composition changed toward fast-growing traits on non-serpentine, but not on serpentine soils. Soil organic matter increased with rainfall, but only on non-serpentine soils, and the difference in organic matter between soils was positively correlated with plant community dissimilarity. These results illustrate a novel mechanism wherein climatic productivity is associated with higher species, functional, and landscape-level dissimilarity (beta diversity).

Rooting strategies in a subtropical savanna: a landscape-scale three-dimensional assessment.

PubMed

Zhou, Yong; Boutton, Thomas W; Wu, X Ben; Wright, Cynthia L; Dion, Anais L

2018-04-01

In resource-limited savannas, the distribution and abundance of fine roots play an important role in acquiring essential resources and structuring vegetation patterns and dynamics. However, little is known regarding the three-dimensional distribution of fine roots in savanna ecosystems at the landscape scale. We quantified spatial patterns of fine root density to a depth of 1.2 m in a subtropical savanna landscape using spatially specific sampling. Kriged maps revealed that fine root density was highest at the centers of woody patches, decreased towards the canopy edges, and reached lowest values within the grassland matrix throughout the entire soil profile. Lacunarity analyses indicated that spatial heterogeneities of fine root density decreased continuously to a depth of 50 cm and then increased in deeper portions of the soil profile across this landscape. This vertical pattern might be related to inherent differences in root distribution between trees/shrubs and herbaceous species, and the presence/absence of an argillic horizon across this landscape. The greater density of fine roots beneath woody patches in both upper and lower portions of the soil profile suggests an ability to acquire disproportionately more resources than herbaceous species, which may facilitate the development and persistence of woody patches across this landscape.

Lateral spread affects nitrogen leaching from urine patches.

PubMed

Cichota, Rogerio; Vogeler, Iris; Snow, Val; Shepherd, Mark; McAuliffe, Russell; Welten, Brendon

2018-09-01

Nitrate leaching from urine deposited by grazing animals is a critical constraint for sustainable dairy farming in New Zealand. While considerable progress has been made to understand the fate of nitrogen (N) under urine patches, little consideration has been given to the spread of urinary N beyond the wetted area. In this study, we modelled the lateral spread of nitrogen from the wetted area of a urine patch to the soil outside the patch using a combination of two process-based models (HYDRUS and APSIM). The simulations provided insights on the extent and temporal pattern for the redistribution of N in the soil following a urine deposition and enabled investigating the effect of lateral spread of urinary N on plant growth and N leaching. The APSIM simulation, using an implementation of a dispersion-diffusion function, was tested against experimental data from a field experiment conducted in spring on a well-drained soil. Depending on the geometry considered for the dispersion-diffusion function (plate or cylindrical) the area-averaged N leaching decreased by 8 and 37% compared with simulations without lateral N spread; this was due to additional N uptake from pasture on the edge area. A sensitivity analysis showed that area-averaged pasture growth was not greatly affected by the value of the dispersion factor used in the model, whereas N leaching was very sensitive. Thus, the need to account for the edge effect may depend on the objective of the simulations. The modelling results also showed that considering lateral spread of urinary N was sufficient to describe the experimental data, but plant root uptake across urine patch zones may still be relevant in other conditions. Although further work is needed for improving accuracy, the simulated and experimental results demonstrate that accounting for the edge effect is important for determining N leaching from urine-affected areas. Copyright © 2018 Elsevier B.V. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Onder, Zeynep; Moroianu, Junona, E-mail: moroianu@bc.edu

We have previously discovered and characterized the nuclear import pathways for the E7 oncoproteins of mucosal alpha genus HPVs, type 16 and 11. Here we investigated the nuclear import of cutaneous beta genus HPV8 E7 protein using confocal microscopy after transfections of HeLa cells with EGFP-8E7 and mutant plasmids and nuclear import assays in digitonin-permeabilized HeLa cells. We determined that HPV8 E7 contains a nuclear localization signal (NLS) within its zinc-binding domain that mediates its nuclear import. Furthermore, we discovered that a mostly hydrophobic patch {sub 65}LRLFV{sub 69} within the zinc-binding domain is essential for the nuclear import and localizationmore » of HPV8 E7 via hydrophobic interactions with the FG nucleoporins Nup62 and Nup153. Substitution of the hydrophobic residues within the {sub 65}LRLFV{sub 69} patch to alanines, and not R66A mutation, disrupt the interactions between the 8E7 zinc-binding domain and Nup62 and Nup153 and consequently inhibit nuclear import of HPV8 E7. - Highlights: • HPV8 E7 has a cNLS within its zinc-binding domain that mediates its nuclear import. • Discovery of a hydrophobic patch that is critical for the nuclear import of HPV8 E7. • HPV8 E7 nuclear import is mediated by hydrophobic interactions with FG-Nups, Nup62 and Nup153.« less

Biochar incorporation into pasture soil suppresses in situ nitrous oxide emissions from ruminant urine patches.

PubMed

Taghizadeh-Toosi, Arezoo; Clough, Tim J; Condron, Leo M; Sherlock, Robert R; Anderson, Craig R; Craigie, Robin A

2011-01-01

Nitrous oxide (N2O) emissions from grazing animal excreta are estimated to be responsible for 1.5 Tg of the total 6.7 Tg of anthropogenic N2O emissions. This study was conducted to determine the in situ effect of incorporating biochar, into soil, on N2O emissions from bovine urine patches and associated pasture uptake of N. The effects of biochar rate (0-30 t ha(-1)), following soil incorporation, were investigated on ruminant urine-derived N2O fluxes, N uptake by pasture, and pasture yield. During an 86-d spring-summer period, where irrigation and rainfall occurred, the N2O fluxes from 15N labeled ruminant urine patches were reduced by >50%, after incorporating 30 t ha(-1) of biochar. Taking into account the N2O emissions from the control plots, 30 t ha(-1) ofbiochar reduced the N2O emission factor from urine by 70%. The atom% 15N enrichment of the N2O emitted was lower in the 30 t ha(-1) biochar treatment, indicating less urine-N contributed to the N2O flux. Soil NO3- -N concentrations were lower with increasing biochar rate during the first 30 d following urine deposition. No differences occurred, due to biochar addition, with respect to dry matter yields, herbage N content, or recovery of 15N applied in herbage. Incorporating biochar into the soil can significantly diminish ruminant urine-derived N2O emissions. Further work is required to determine the persistence of the observed effect and to fully understand the mechanism(s) of the observed reduction in N2O fluxes.

Landscape and hydrologic changes in the permafrost regions of the Western Canadian Arctic

NASA Astrophysics Data System (ADS)

Marsh, P.

2012-12-01

The Western Canadian Arctic, in the vicinity of the Mackenzie River Delta, is characterized by long cold winters, short summers, low precipitation, thin organic soils, and ice-rich continuous permafrost. Over the last few decades, this region has undergone dramatic changes in climate, with warming air temperature and decreasing winter and summer precipitation. This has resulted in various landscape changes, including the warming of the upper layers of the permafrost, deepening of the active layer, drainage of permafrost affected lakes, an ongoing change from tundra to shrub tundra, and earlier spring breakup of streams, rivers and lakes. However, interactions between climate, hydrology, snow, and vegetation greatly affect both the spatial and temporal changes to the permafrost and hydrology of this region. Knowledge of these changes is important to the understanding of methane dynamics in this permafrost landscape, and for predicting future changes. Two examples of observed landscape change will be discussed. First, ground based observations and analysis of air photo images has demonstrated that shrub expansion is not uniform across the landscape, but instead is characterized by shrub patches of varying size. This patchiness is likely related to existing variations in soil temperature and moisture, active layer depth, snowcover, and tundra fires. As shrub patches further develop, they impact soil temperature and active layer depth. For example, small patches of shrubs typically have snow depths that are deeper than surrounding tundra areas due to the accumulation of blowing snow, and as a result have much warmer soil temperatures and deeper active layers. In contrast to these small shrub patches, large shrub patches have snow depths only slightly larger than found in the surrounding tundra and therefore only slightly warmer winter soil temperatures. However, shading of the surface during the summer may result in cooler summer soil temperatures. The overall effect of large shrub patches may be either deeper or shallower active layer depths than the surrounding tundra areas, depending on the leaf area index, the degree of shrub bending during the winter, and snow accumulation. Second, in contrast to many areas in Alaska and Siberia where increased rates of lake drainage have been reported, the rate of lake drainage in the Western Canadian Arctic has been decreasing over the past 50 years. The primary factors causing lake drainage in this region are high lake levels and winter cracking of ice wedges in the area immediately around the lake. Hydrologic modelling has suggested that summer lake levels have not changed significantly over the last 50 years, and therefore are not responsible for the decrease in drainage. However, the role of factors such as snow dams at lake outlets that result in high spring water levels, or the offsetting factors of warmer, but less snowy winters on ice wedge cracking are not well understood. As a result, further research is required to better understand how these lakes will respond to future changes in climate. Given the potential changes to methane dynamics in areas of changing permafrost, there is an urgent need to better understand ongoing, and future, changes in the landscape of these permafrost regions.

Impacts of single and recurrent wildfires on topsoil moisture regime

NASA Astrophysics Data System (ADS)

González-Pelayo, Oscar; Malvar, Maruxa; van den Elsen, Erik; Hosseini, Mohammadreza; Coelho, Celeste; Ritsema, Coen; Bautista, Susana; Keizer, Jacob

2017-04-01

The increasing fire recurrence on forest in the Mediterranean basin is well-established by future climate scenarios due to land use changes and climate predictions. By this, shifts on mature pine woodlands to shrub rangelands are of major importance on forest ecosystems buffer functions, since historical patterns of established vegetation help to recover from fire disturbances. This fact, together with the predicted expansion of the drought periods, will affect feedback processes of vegetation patterns since water availability on these seasons are driven by post-fire local soil properties. Although fire impacts of soil properties and water availability has been widely studied using the fire severity as the main factor, little research is developed on post-fire soil moisture patterns, including the fire recurrence as a key explanatory variable. The following research investigated, in pine woodlands of north central Portugal, the short-term consequences (one year after a fire) of wildfire recurrence on the surface soil moisture content (SMC) and on effective soil water (SWEFF, parameter that includes actual daily soil moisture, soil field capacity-FC and permanent wilting point-PWP). The study set-up includes analyses at two fire recurrence scenarios (1x- and 4x-burnt since 1975), at a patch level (shrub patch/interpatch) and at two soil depths (2.5 and 7.5 cm) in a nested approach. Understanding how fire recurrence affects water in soil over space and time is the main goal of this research. The use of soil moisture sensors in a nested approach, the rainfall features and analyses on basic soil properties as soil organic matter, texture, bulk density, pF curves, soil water repellency and soil surface components will establish which factors has the largest role in controlling soil moisture behavior. Main results displayed, in a seasonal and yearly basis, no differences on SMC as increasing fire recurrence (1x- vs 4x-burnt) neither between patch/interpatch microsites at both two soil depths. Otherwise, in a yearly basis and during soil drying cycles, it was found less effective water on soil at the surface layers of the 4x-burnt and between shrub interpatches, based on the worst soil hydrological conditions (PWP) and the increasing percentage of abiotic soil surface components as increasing fire recurrence. Our results suggest that the inclusion of soil hydrological properties, as pF-curves, on the soil water effectiveness calculation seems to be a better indicator of water availability that volumetric SM per se. Otherwise, the use of a nested approach methodology, stresses how fire recurrence, expected increases in the summer drought spells and, the increasing dominance of abiotic soil surface components, are the factors that much influence soil eco-hydrological functioning in fire prone ecosystems. Furthermore, this research point out how post-fire soil structural quality into plant interpatches could provoke looping feedback processes triggering desertification situations also in humid Mediterranean forestlands.

Effects of Spatial Patch Arrangement and Scale of Covarying Resources on Growth and Intraspecific Competition of a Clonal Plant

PubMed Central

Wang, Yong-Jian; Shi, Xue-Ping; Meng, Xue-Feng; Wu, Xiao-Jing; Luo, Fang-Li; Yu, Fei-Hai

2016-01-01

Spatial heterogeneity in two co-variable resources such as light and water availability is common and can affect the growth of clonal plants. Several studies have tested effects of spatial heterogeneity in the supply of a single resource on competitive interactions of plants, but none has examined those of heterogeneous distribution of two co-variable resources. In a greenhouse experiment, we grew one (without intraspecific competition) or nine isolated ramets (with competition) of a rhizomatous herb Iris japonica under a homogeneous environment and four heterogeneous environments differing in patch arrangement (reciprocal and parallel patchiness of light and soil water) and patch scale (large and small patches of light and water). Intraspecific competition significantly decreased the growth of I. japonica, but at the whole container level there were no significant interaction effects of competition by spatial heterogeneity or significant effect of heterogeneity on competitive intensity. Irrespective of competition, the growth of I. japonica in the high and the low water patches did not differ significantly in the homogeneous treatments, but it was significantly larger in the high than in the low water patches in the heterogeneous treatments with large patches. For the heterogeneous treatments with small patches, the growth of I. japonica was significantly larger in the high than in the low water patches in the presence of competition, but such an effect was not significant in the absence of competition. Furthermore, patch arrangement and patch scale significantly affected competitive intensity at the patch level. Therefore, spatial heterogeneity in light and water supply can alter intraspecific competition at the patch level and such effects depend on patch arrangement and patch scale. PMID:27375630

Effects of Spatial Patch Arrangement and Scale of Covarying Resources on Growth and Intraspecific Competition of a Clonal Plant.

PubMed

Wang, Yong-Jian; Shi, Xue-Ping; Meng, Xue-Feng; Wu, Xiao-Jing; Luo, Fang-Li; Yu, Fei-Hai

2016-01-01

Spatial heterogeneity in two co-variable resources such as light and water availability is common and can affect the growth of clonal plants. Several studies have tested effects of spatial heterogeneity in the supply of a single resource on competitive interactions of plants, but none has examined those of heterogeneous distribution of two co-variable resources. In a greenhouse experiment, we grew one (without intraspecific competition) or nine isolated ramets (with competition) of a rhizomatous herb Iris japonica under a homogeneous environment and four heterogeneous environments differing in patch arrangement (reciprocal and parallel patchiness of light and soil water) and patch scale (large and small patches of light and water). Intraspecific competition significantly decreased the growth of I. japonica, but at the whole container level there were no significant interaction effects of competition by spatial heterogeneity or significant effect of heterogeneity on competitive intensity. Irrespective of competition, the growth of I. japonica in the high and the low water patches did not differ significantly in the homogeneous treatments, but it was significantly larger in the high than in the low water patches in the heterogeneous treatments with large patches. For the heterogeneous treatments with small patches, the growth of I. japonica was significantly larger in the high than in the low water patches in the presence of competition, but such an effect was not significant in the absence of competition. Furthermore, patch arrangement and patch scale significantly affected competitive intensity at the patch level. Therefore, spatial heterogeneity in light and water supply can alter intraspecific competition at the patch level and such effects depend on patch arrangement and patch scale.

Utilization of MatPIV program to different geotechnical models

NASA Astrophysics Data System (ADS)

Aklik, P.; Idinger, G.

2009-04-01

The Particle Imaging Velocimetry (PIV) technique is being used to measure soil displacements. PIV has been used for many years in fluid mechanics; but for physical modeling in geotechnical engineering, this technique is still relatively new. PIV is a worldwide growth in soil mechanics over the last decade owing to the developments in digital cameras and laser technologies. The use of PIV is feasible provided the surface contains sufficient texture. A Cambridge group has shown that natural sand contains enough texture for applying PIV. In a texture-based approach, the only requirement is for any patch, big or small to be sufficiently unique so that statistical tracking of this patch is possible. In this paper, some of the soil mechanic's models were investigated such as retaining walls, slope failures, and foundations. The photographs were taken with the help of the high resolution digital camera, the displacements of soils were evaluated with free software named as MatPIV and the displacement graphics between the two images were obtained. Nikon D60 digital camera is 10.2 MB and it has special properties which makes it possible to use in PIV applications. These special properties are Airflow Control System and Image Sensor cleaning for protection against dust, Active D-Lighting for highlighted or shadowy areas while shooting, advanced three-point AF system for fast, efficient and precise autofocus. Its fast and continuous shooting mode enables up to 100 JPEG images at three frames per second. Norm Sand (DIN 1164) was used for all the models in a glass rectangular box. For every experiment, MatPIV was used to calculate the velocities from the two images. MatPIV program was used in two ways such as easy way and difficult way: In the easy way, the two images with 64*64 pixels with 50% or 75% overlap of the interrogation windows were taken into consideration and the calculation was performed with a single iteration through the images and the result consisted of four matrices measured in pixels and pixels/second. At the end of the iteration, the results were visualized. In the application of difficult way of MatPIV, a grid of points into the research model was inserted and the first image was taken with the Nikon D60 digital camera. Afterwards, how large a pixel in the image and the orientation of the coordinate system were calculated. If there are no particles to perform PIV calculations in the investigated region, the best way is to mask out this empty region. The crucial step in PIV is the particle image analysis, which is to determine the displacements between two successive images. The first image was divided into a grid of test patches. Each test patch consisted of a sample of the image matrix of size L * L pixels. To find the displacement of the test patch between images 1 and 2, a search patch was extracted from the second image. The cross-correlation of test patch and search patch was evaluated. The resulting normalized correlation plane indicated the "degree of match" between the test and search patch. The highest peak in the normalized correlation plane indicated the displacement vector of the test patch. The procedure described above for evaluation a single displacement vector was repeated for the entire grid of test patches, producing the displacement field between the image pair. After having performed the calculations, there were so many wild vectors due to low image quality in some parts of the images to be removed with the help of the different filters. There are four different filters in MatPIV, these are: signal-to-noise ratio filter, peak height filter, global filter, and local filter. The filters were used step by step to decide which filter could give the best result for the related images. As a last step, both of the ways were compared in each geotechnical model.

Soil nitrogen dynamics in a river floodplain mosaic.

PubMed

Shrestha, J; Niklaus, P A; Frossard, E; Samaritani, E; Huber, B; Barnard, R L; Schleppi, P; Tockner, K; Luster, J

2012-01-01

In their natural state, river floodplains are heterogeneous and dynamic ecosystems that may retain and remove large quantities of nitrogen from surface waters. We compared the soil nitrogen dynamics in different types of habitat patches in a restored and a channelized section of a Thur River floodplain (northeast Switzerland). Our objective was to relate the spatiotemporal variability of selected nitrogen pools (ammonium, nitrate, microbial nitrogen), nitrogen transformations (mineralization, nitrification, denitrification), and gaseous nitrogen emission (NO) to soil properties and hydrological processes. Our study showed that soil water content and carbon availability, which depend on sedimentation and inundation dynamics, were the key factors controlling nitrogen pools and processes. High nitrogen turnover rates were measured on gravel bars, characterized by both frequent inundation and high sediment deposition rates, as well as in low-lying alluvial forest patches with a fine-textured, nutrient-rich soil where anaerobic microsites probably facilitated coupled nitrification-denitrification. In contrast, soils of the embankment in the channelized section had comparatively small inorganic nitrogen pools and low transformation rates, particularly those related to nitrate production. Environmental heterogeneity, characteristic of the restored section, favors nitrogen removal by creating sites of high sedimentation and denitrification. Of concern, however, are the locally high NO efflux and the possibility that nitrate could leach from nitrification hotspots. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Variations in spatial patterns of soil-vegetation properties and the emergence of multiple resilience thresholds within different debris flow fan positions

NASA Astrophysics Data System (ADS)

Mohseni, Neda; Hosseinzadeh, Seyed Reza; Sepehr, Adel; Golzarian, Mahmood Reza; Shabani, Farzin

2017-08-01

Debris flow fans are non-equilibrium landforms resulting from the spatial variations of debris flows deposited on them. This geomorphic disturbance involving the asymmetric redistribution of water and sediment may create spatially heterogeneous patterns of soil-vegetation along landforms. In this research, founded on field-based observations, we characterized the spatial patterns of some soil (e.g., particle size distribution including fine and coarse covers, and infiltration capacity) and vegetation (e.g., plant distance, vegetation density, patch size, and average number of patches) properties within different debris flow fan positions (Upper, Middle, and Lower fan) located at the base of the Binaloud Mountain hillslope in northeastern Iran. Thereafter, using a mathematical model of dry land vegetation dynamics, we calculated response trends of the different positions to the same environmental harshness gradient. Field measurements of soil-vegetation properties and infiltration rates showed that the asymmetric redistribution of debris flow depositions can cause statistically significant differences (P < 0.05) in the spatial patterns of soil and eco-hydrological characteristics along different landform positions. The results showed that mean plant distance, mean vegetation density, and the average number of patches decreased as the coarse covers increased toward the Lower fan plots. Conversely, an increase in infiltration rate was observed. The simulation results on the aerial images taken from different positions, illustrated that positions with a heterogeneous distribution of vegetation patterns were not desertified to the same degree of aridity. Thus, the Middle and Lower positions could survive under harsher aridity conditions, due to the emergence of more varied spatial vegetation patterns than at the Upper fan position. The findings, based on a combined field and modeling approach, highlighted that debris flow as a geomorphic process with the asymmetric distribution of depositions on the gentle slope of an alluvial fan, can incur multiple resilience thresholds with different degrees of self-organization under stressful conditions over the spatial heterogeneities of soil-dependent vegetation structures.

Fine root responses to temporal nutrient heterogeneity and competition in seedlings of two tree species with different rooting strategies.

PubMed

Wang, Peng; Shu, Meng; Mou, Pu; Weiner, Jacob

2018-03-01

There is little direct evidence for effects of soil heterogeneity and root plasticity on the competitive interactions among plants. In this study, we experimentally examined the impacts of temporal nutrient heterogeneity on root growth and interactions between two plant species with very different rooting strategies: Liquidambar styraciflua (sweet gum), which shows high root plasticity in response to soil nutrient heterogeneity, and Pinus taeda (loblolly pine), a species with less plastic roots. Seedlings of the two species were grown in sandboxes in inter- and intraspecific combinations. Nutrients were applied in a patch either in a stable (slow-release) or in a variable (pulse) manner. Plant aboveground biomass, fine root mass, root allocation between nutrient patch and outside the patch, and root vertical distribution were measured. L. styraciflua grew more aboveground (40% and 27% in stable and variable nutrient treatment, respectively) and fine roots (41% and 8% in stable and variable nutrient treatment, respectively) when competing with P. taeda than when competing with a conspecific individual, but the growth of P. taeda was not changed by competition from L. styraciflua . Temporal variation in patch nutrient level had little effect on the species' competitive interactions. The more flexible L. styraciflua changed its vertical distribution of fine roots in response to competition from P. taeda , growing more roots in deeper soil layers compared to its roots in conspecific competition, leading to niche differentiation between the species, while the fine root distribution of P. taeda remained unchanged across all treatments. Synthesis . L. styraciflua showed greater flexibility in root growth by changing its root vertical distribution and occupying space of not occupied by P. taeda . This flexibility gave L. styraciflua an advantage in interspecific competition.

Fatal overdose after ingestion of a transdermal fentanyl patch in two non-human primates.

PubMed

Deschamps, Jack-Yves; Gaulier, Jean-Michel; Podevin, Guillaume; Cherel, Yan; Ferry, Nicolas; Roux, Françoise A

2012-11-01

CASE HISTORY AND PRESENTATION: Two non-human primates (Macaca fascicularis), weight 3.5 kg, enrolled in an experimental protocol received a 25 μg hour(-1) transdermal fentanyl patch for postoperative analgesia. The following day both animals were clinically normal, but after a new induction of anaesthesia with ketamine, they developed severe and prolonged respiratory distress, profound coma and myosis. MANAGEMENT AND FOLLOW-UP: Attempted reversal with naloxone was ineffective. After several hours of ventilation, both primates eventually died, 7 and 15 hours after ketamine injection, respectively. In both cases, the patch was discovered in the animal's cheek pouch. Subsequent fentanyl serum concentration measurements (8.29 and 14.80 μg L(-1) ) confirmed fentanyl overdose. This report of two fatal intoxications in non-human primates secondary to ingestion of a transdermal fentanyl patch demonstrates that this method of analgesia is inappropriate for non-human primates, because of their tendency to chew almost anything they can reach. © 2012 The Authors. Veterinary Anaesthesia and Analgesia. © 2012 Association of Veterinary Anaesthetists and the American College of Veterinary Anesthesiologists.

[Spatiotemporal variation of typical red soil eroded landscape pattern: a case study in Changting County of Fujian Province].

PubMed

Wu, Guo-sheng; Lin, Hui-hua; Zhu, He-jian; Sha, Jin-ming; Dai, Wen-yuan

2011-07-01

Based on the 1988, 2000, and 2007 remote sensing images of a typical red soil eroded region (Changting County, Fujian Province) and the digital elevation model (DEM), the eroded landscape types were worked out, and the changes of the eroded landscape pattern in the region from 1988 to 2007 were analyzed with the spatial mathematics model. In 1988-2007, different eroded landscape types in the region had the characteristics of inter-transfer, mainly manifested in the transfer from seriously eroded to lightly eroded types but still existed small amount of the transference from lightly eroded to seriously eroded types. Little change was observed in the controid of the eroded landscape. In the County, Hetian Town was all along the eroded center. During the study period, the landscape pattern index showed a tendency of low heterogeneity, low fragmentation, and high regularization at landscape level, but an overall improvement and expansion of lightly eroded and easy-to-tackle patches as well as the partial improvement and fragmentation of seriously eroded and difficult-to-tackle patches at patch level.

Clonal foraging in perennial wheatgrasses: A strategy for exploiting patchy soil nutrients

USGS Publications Warehouse

Humphrey, L. David; Pyke, David A.

1997-01-01

1. Foraging by means of plasticity in placement of tillers in response to low- and high-nutrient patches was examined in the rhizomatous wheatgrass Elymus lanceolatus ssp. lanceolatus. Its ability to exploit soil nutrient patches was compared to that of the closely related but caespitose E. lanceolatus ssp. wawawaiensis.2. Clones of 14 genets of each taxon were planted in boxes consisting of two 30 × 30 cm cells: the `origin cell' where clones were planted, and the adjacent `destination cell', with each cell containing soil with either low or high levels of nutrients.3. The rhizomatous taxon, which can produce intravaginal, short-rhizome and long-rhizome tillers, preferentially produced short-rhizome and intravaginal tillers in high-nutrient destination cells. Effects of nutrient status of the origin cell as well as of the destination cell on total tiller numbers indicated clonal integration, yet tiller placement responded to local conditions.4. Roots of both taxa accessed nutrients in destination cells (the caespitose subspecies by root growth only), and above-ground biomass of both taxa increased to a similar extent with high-nutrient destination cells. With the patch sizes used in this experiment, root growth was as important as ramet placement in exploiting nutrients in destination cells. 5 There was no relationship between degree of plasticity in ramet placement and biomass of the clone when high-nutrient destination cells were present.

Vegetation patches improve the establishment of Salvia mexicana seedlings by modifying microclimatic conditions

NASA Astrophysics Data System (ADS)

Mendoza-Hernández, Pedro E.; Rosete-Rodríguez, Alejandra; Sánchez-Coronado, María E.; Orozco, Susana; Pedrero-López, Luis; Méndez, Ignacio; Orozco-Segovia, Alma

2014-07-01

Human disturbance has disrupted the dynamics of plant communities. To restore these dynamics, we could take advantage of the microclimatic conditions generated by remaining patches of vegetation and plastic mulch. These microclimatic conditions might have great importance in restoring disturbed lava fields located south of Mexico City, where the rock is exposed and the soil is shallow. We evaluated the effects of both the shade projected by vegetation patches and plastic mulch on the mean monthly soil surface temperature ( T ss) and photosynthetic photon flux density (PPFD) and on the survival and growth of Salvia mexicana throughout the year. This species was used as a phytometer of microsite quality. Shade reduced the T ss to a greater extent than mulch did. Both survival and growth were enhanced by shade and mulch, and the PPFD was related with seedling growth. During the dry season, plant biomass was lost, and there was a negative effect of PPFD on plant growth. At micro-meteorological scales, the use of shade projected by patches of vegetation and mulch significantly reduced the mortality of S. mexicana and enhanced its growth. Survival and growth of this plant depended on the environmental quality of microsites on a small scale, which was determined by the environmental heterogeneity of the patches and the landscape. For plant restoration, microsite quality must be evaluated on small scales, but on a large scale it may be enough to take advantage of landscape shade dynamics and the use of mulch to increase plant survival and growth.

Vegetation patches improve the establishment of Salvia mexicana seedlings by modifying microclimatic conditions.

PubMed

Mendoza-Hernández, Pedro E; Rosete-Rodríguez, Alejandra; Sánchez-Coronado, María E; Orozco, Susana; Pedrero-López, Luis; Méndez, Ignacio; Orozco-Segovia, Alma

2014-07-01

Human disturbance has disrupted the dynamics of plant communities. To restore these dynamics, we could take advantage of the microclimatic conditions generated by remaining patches of vegetation and plastic mulch. These microclimatic conditions might have great importance in restoring disturbed lava fields located south of Mexico City, where the rock is exposed and the soil is shallow. We evaluated the effects of both the shade projected by vegetation patches and plastic mulch on the mean monthly soil surface temperature (Tss) and photosynthetic photon flux density (PPFD) and on the survival and growth of Salvia mexicana throughout the year. This species was used as a phytometer of microsite quality. Shade reduced the T ss to a greater extent than mulch did. Both survival and growth were enhanced by shade and mulch, and the PPFD was related with seedling growth. During the dry season, plant biomass was lost, and there was a negative effect of PPFD on plant growth. At micro-meteorological scales, the use of shade projected by patches of vegetation and mulch significantly reduced the mortality of S. mexicana and enhanced its growth. Survival and growth of this plant depended on the environmental quality of microsites on a small scale, which was determined by the environmental heterogeneity of the patches and the landscape. For plant restoration, microsite quality must be evaluated on small scales, but on a large scale it may be enough to take advantage of landscape shade dynamics and the use of mulch to increase plant survival and growth.

Functional traits variation explains the distribution of Aextoxicon punctatum (Aextoxicaceae) in pronounced moisture gradients within fog-dependent forest fragments.

PubMed

Salgado-Negret, Beatriz; Canessa, Rafaella; Valladares, Fernando; Armesto, Juan J; Pérez, Fernanda

2015-01-01

Climate change and fragmentation are major threats to world forests. Understanding how functional traits related to drought tolerance change across small-scale, pronounced moisture gradients in fragmented forests is important to predict species' responses to these threats. In the case of Aextoxicon punctatum, a dominant canopy tree in fog-dependent rain forest patches in semiarid Chile, we explored how the magnitude, variability and correlation patterns of leaf and xylem vessel traits and hydraulic conductivity varied across soil moisture (SM) gradients established within and among forest patches of different size, which are associated with differences in tree establishment and mortality patterns. Leaf traits varied across soil-moisture gradients produced by fog interception. Trees growing at drier leeward edges showed higher leaf mass per area, trichome and stomatal density than trees from the wetter core and windward zones. In contrast, xylem vessel traits (vessels diameter and density) did not vary producing loss of hydraulic conductivity at drier leeward edges. We also detected higher levels of phenotypic integration and variability at leeward edges. The ability of A. punctatum to modify leaf traits in response to differences in SM availability established over short distances (<500 m) facilitates its persistence in contrasting microhabitats within forest patches. However, xylem anatomy showed limited plasticity, which increases cavitation risk at leeward edges. Greater patch fragmentation, together with fluctuations in irradiance and SM in small patches, could result in higher risk of drought-related tree mortality, with profound impacts on hydrological balances at the ecosystem scale.

Functional traits variation explains the distribution of Aextoxicon punctatum (Aextoxicaceae) in pronounced moisture gradients within fog-dependent forest fragments

PubMed Central

Salgado-Negret, Beatriz; Canessa, Rafaella; Valladares, Fernando; Armesto, Juan J.; Pérez, Fernanda

2015-01-01

Climate change and fragmentation are major threats to world forests. Understanding how functional traits related to drought tolerance change across small-scale, pronounced moisture gradients in fragmented forests is important to predict species’ responses to these threats. In the case of Aextoxicon punctatum, a dominant canopy tree in fog-dependent rain forest patches in semiarid Chile, we explored how the magnitude, variability and correlation patterns of leaf and xylem vessel traits and hydraulic conductivity varied across soil moisture (SM) gradients established within and among forest patches of different size, which are associated with differences in tree establishment and mortality patterns. Leaf traits varied across soil-moisture gradients produced by fog interception. Trees growing at drier leeward edges showed higher leaf mass per area, trichome and stomatal density than trees from the wetter core and windward zones. In contrast, xylem vessel traits (vessels diameter and density) did not vary producing loss of hydraulic conductivity at drier leeward edges. We also detected higher levels of phenotypic integration and variability at leeward edges. The ability of A. punctatum to modify leaf traits in response to differences in SM availability established over short distances (<500 m) facilitates its persistence in contrasting microhabitats within forest patches. However, xylem anatomy showed limited plasticity, which increases cavitation risk at leeward edges. Greater patch fragmentation, together with fluctuations in irradiance and SM in small patches, could result in higher risk of drought-related tree mortality, with profound impacts on hydrological balances at the ecosystem scale. PMID:26257746

Spatial heterogeneity of physicochemical properties explains differences in microbial composition in arid soils from Cuatro Cienegas, Mexico

PubMed Central

Pajares, Silvia; Noguez, Ana M.; García-Oliva, Felipe; Martínez-Piedragil, Celeste; Cram, Silke S.; Eguiarte, Luis Enrique; Souza, Valeria

2016-01-01

Arid ecosystems are characterized by high spatial heterogeneity, and the variation among vegetation patches is a clear example. Soil biotic and abiotic factors associated with these patches have also been well documented as highly heterogeneous in space. Given the low vegetation cover and little precipitation in arid ecosystems, soil microorganisms are the main drivers of nutrient cycling. Nonetheless, little is known about the spatial distribution of microorganisms and the relationship that their diversity holds with nutrients and other physicochemical gradients in arid soils. In this study, we evaluated the spatial variability of soil microbial diversity and chemical parameters (nutrients and ion content) at local scale (meters) occurring in a gypsum-based desert soil, to gain knowledge on what soil abiotic factors control the distribution of microbes in arid ecosystems. We analyzed 32 soil samples within a 64 m2 plot and: (a) characterized microbial diversity using T-RFLPs of the bacterial 16S rRNA gene, (b) determined soil chemical parameters, and (c) identified relationships between microbial diversity and chemical properties. Overall, we found a strong correlation between microbial composition heterogeneity and spatial variation of cations (Ca2, K+) and anions (HCO\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{upgreek} \\usepackage{mathrsfs} \\setlength{\\oddsidemargin}{-69pt} \\begin{document} }{}${}_{3}^{-}$\\end{document}3−, Cl−, SO\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{upgreek} \\usepackage{mathrsfs} \\setlength{\\oddsidemargin}{-69pt} \\begin{document} }{}${}_{4}^{2-}$\\end{document}42−) content in this small plot. Our results could be attributable to spatial differences of soil saline content, favoring the patchy emergence of salt and soil microbial communities. PMID:27652001

Quantitative relations between soil heavy metal contamination and landscape pattern in Wuxi, China

NASA Astrophysics Data System (ADS)

Zhu, Ming; Pu, Lijie; Xu, Yan

2017-04-01

Land use practices changed landscape pattern and meanwhile, brought forth numerous environmental problems including heavy metal contamination in soil. In this study, we investigated the quantitative relations between soil heavy metal contamination and its surrounding landscape pattern based on topsoil samples and land use map of Wuxi in 2009. The results of vector fitting with Redundancy analysis in R package vegan showed that Percent Coverage of build-up area (PCB) within 2500 m, Perimeter-Area Fractal Dimension (PAFD) within 2500 m, Edge Density (ED) within 2500 m, Patch Density (PD) within 200 m, Percent Coverage of wetland (PCW) within 2000 m and Patch Cohesion (PC) within 200 m significantly affected the contents of heavy metal elements. The results of Stepwise regression suggested that increase of build-up area and fragmentation would increase Cu and Zn, while increase of wetland would decrease the contents of As and Cu. PAFD was negative with Cd, Hg, Pb and Zn.

Landform and vegetation patch type moderate the effects of grazing-induced disturbance on carbon and nitrogen pools in a semi-arid woodland

USDA-ARS?s Scientific Manuscript database

Background and aims Dryland soil organic carbon (C) pools account for a large portion of soil C globally, but their response to livestock grazing has been difficult to generalize. We hypothesized that some difficulty generalizing was due to spatial heterogeneity in dryland systems. We examined the i...

KSC-08pd3753

NASA Image and Video Library

2008-11-18

CAPE CANAVERAL, Fla. – Workers at Launch Complex 17-B on Cape Canaveral Air Force Station in Florida check the large patch they will place on the Delta 2 rocket (behind them). The patch describes the Kepler spacecraft mission that will be launched by the rocket. The Kepler mission is specifically designed to survey our region of the Milky Way galaxy to discover hundreds of Earth-size and smaller planets in or near the habitable zone and determine how many of the billions of stars in our galaxy have such planets. Results from this mission will allow us to place our solar system within the continuum of planetary systems in the Galaxy. Photo credit: NASA/Jim Grossmann

Using soil residence time to delineate spatial and temporal patterns of transient landscape response

NASA Astrophysics Data System (ADS)

Almond, Peter; Roering, Josh; Hales, T. C.

2007-09-01

On hillslopes the balance between soil transport and production determines local soil thickness and the age distribution of particles that comprise the soil (where age refers to the time elapsed since detachment from bedrock). The mean of this age distribution is defined as the residence time, and in a landscape with time-invariant topography (i.e., morphologic steady state), the spatial uniformity of soil production ensures that the residence time of soils is spatially invariant. Thus, given constant soil-forming factors, spatial variation of soil properties reflects differences in residence time driven by nonuniform soil production. Spatially extensive soil databases, which are often freely available in electronic form, provide a cheap and accessible means of analyzing patterns of soil residence time and quantifying landscape dynamics. Here we use a soil chronosequence to calibrate a chronofunction describing the reddening of soils in the Oregon Coast Range, which is then used to quantify the spatial distribution of soil residence time. In contrast to the popular conception that the Oregon Coast Range experiences uniform erosion, we observe systematic variations in soil residence time driven by stream capture, deep-seated landsliding, and lateral channel migration. Large, contiguous areas with short residence time soils (hue 10YR) occur west of the Siuslaw River-Long Tom Creek drainage divide, whereas soil patches with redder hues of 7.5YR or 5YR indicate longer residence times and transient landscape conditions. These zones of red soils (5YR) occur east of the Siuslaw-Long Tom divide, coinciding with low-gradient ridge and valley topography and deeply alluviated valleys resulting from drainage reversal in the Quaternary. Patches of red soils are also associated with deep-seated landslides at various locations in our study area. Our calculated soil residence times appear subject to overestimation resulting from limitations of the simple weathering index used here and chronofunction calibration uncertainties. Nonetheless, our soil residence time estimates appear accurate to within an order of magnitude and provide a useful constraint on landscape dynamics over geomorphic timescales.

Evaluation of single-band snow-patch mapping using high-resolution microwave remote sensing: an application in the maritime Antarctic

NASA Astrophysics Data System (ADS)

Mora, Carla; Jiménez, Juan Javier; Pina, Pedro; Catalão, João; Vieira, Gonçalo

2017-01-01

The mountainous and ice-free terrains of the maritime Antarctic generate complex mosaics of snow patches, ranging from tens to hundreds of metres. These can only be accurately mapped using high-resolution remote sensing. In this paper we evaluate the application of radar scenes from TerraSAR-X in High Resolution SpotLight mode for mapping snow patches at a test area on Fildes Peninsula (King George Island, South Shetlands). Snow-patch mapping and characterization of snow stratigraphy were conducted at the time of image acquisition on 12 and 13 January 2012. Snow was wet in all studied snow patches, with coarse-grain and rounded crystals showing advanced melting and with frequent ice layers in the snow pack. Two TerraSAR-X scenes in HH and VV polarization modes were analysed, with the former showing the best results when discriminating between wet snow, lake water and bare soil. However, significant overlap in the backscattering signal was found. Average wet-snow backscattering was -18.0 dB in HH mode, with water showing -21.1 dB and bare soil showing -11.9 dB. Single-band pixel-based and object-oriented image classification methods were used to assess the classification potential of TerraSAR-X SpotLight imagery. The best results were obtained with an object-oriented approach using a watershed segmentation with a support vector machine (SVM) classifier, with an overall accuracy of 92 % and Kappa of 0.88. The main limitation was the west to north-west facing snow patches, which showed significant error, an issue related to artefacts from the geometry of satellite imagery acquisition. The results show that TerraSAR-X in SpotLight mode provides high-quality imagery for mapping wet snow and snowmelt in the maritime Antarctic. The classification procedure that we propose is a simple method and a first step to an implementation in operational mode if a good digital elevation model is available.

Spatial Variation in Transpiration Within a Small Forest Patch in Hoa Binh, Northern Vietnam

NASA Astrophysics Data System (ADS)

Giambelluca, T. W.; Ziegler, A. D.; Nullet, M. A.; Dao, T. M.

2001-12-01

We conducted measurements of small-scale variations in microclimate and sapflow within and near a small forest patch in Ban Tat Hamlet, Hoa Binh, northern Vietnam. Our observations provide evidence of the influences of surrounding clearings on forest patch microclimate and transpiration. The effects of proximity to the forest edge can be seen in the gradients in temperature, humidity, wind, and soil moisture content. Sapflow measurements in sample trees strongly indicate that transpiration rates are higher near the edge of the patch (edge effect). This effect is seen in the averages for the whole study period, despite infrequent wind flow into the instrumented edge of the patch. Edge effect is observed during both dry and wet periods, but is most apparent on days when solar and net radiation are high, relative humidity is low, or wind direction is from the clearing into the forest edge. These conditions are conducive to high positive heat advection from the clearing to the forest edge. Transpiration in both edge and interior trees is highly correlated with conditions in the clearing. Our results suggest that greater land-cover fragmentation tends to increase regional evaporative flux, i.e. fragmentation of remaining forested areas partly reverses the reduction in regional evaporation due to deforestation. We can infer from the distance-to-edge dependency of transpiration that the magnitude of this regional effect depends on the size, shape, and spatial distribution of landscape patches. It is also likely that the replacement land cover and moisture status of the clearings affect this process. Although we found slightly greater edge effect during the dry period of our observations, it is possible that under more prolonged or severe dry conditions, the soil moisture storage at the forest edge would become depleted leading to a reversal the transpiration pattern. >http://webdata.soc.hawaii.edu/climate/Frags/Frags.html

Hydraulic redistribution in a Mediterranean wild olive-pasture ecosystem: A key to tree survival and a limit to tree-patch size.

NASA Astrophysics Data System (ADS)

Curreli, Matteo; Montaldo, Nicola; Oren, Ram

2017-04-01

In water-limited environments, such as certain Mediterranean ecosystems, trees may survive prolonged droughts by uptake of water by dimorphic root system: deep roots, growing vertically, and shallower lateral roots, extending beyond the crown projection of tree clumps into zones of seasonal vegetative cover. In such ecosystems, therefore, the balance between soil water under tree canopy versus that in treeless patches plays a crucial role on sustaining tree physiological performance and surface water fluxes during drought periods. The study has been performed at the Orroli site, Sardinia (Italy). The landscape is covered by patchy vegetation: wild olives trees in clumps, herbaceous species, drying to bare soil in late spring. The climate is Mediterranean maritime with long droughts from May to October, and an historical mean yearly rain of about 670 mm concentrated in the autumn and winter months. Soil depth varies from 10 to 50 cm, with underlying fractured rocky layer of basalt. From 2003, a 10 meters micrometeorological tower equipped with eddy-covariance system has been used for measuring water and energy surface fluxes, as well as key state variables (e.g. leaf and soil skin temperature, radiations, air humidity and wind velocity). Soil moisture was measured with five soil water reflectometers (two below the olive canopy and three in patches with pasture vegetation alternating with bare soil in the dry season). Early analyses show that wild olive continue to transpire even as the soil dries and the pasture desiccates. In 2015, to estimate plant water use and in the context of soil water dynamic, 33 Granier-type thermal dissipation probes were installed for estimating sap flow in stems of wild olives trees, 40 cm aboveground, in representative trees over the eddy-covariance foot-print. The combined data of sap flow, soil water content, and eddy covariance, revealed hydraulic redistribution system through the plant and the soil at different layers, allowing to quantify the reliance of the system on different horizontally and vertically differentiated soil compartments. Results shows that during light hours, until transpiration decreases in midday, shallow roots uptake deplete the water content in the upper layer. As transpiration decreases, hydraulically redistributed water provides for both transpiration of wild olives and recharge of shallow soil layers. This buffering, attained by long recharge time of shallow soil, allow woody vegetation to remain physiologically active during very dry conditions. The hydraulically redistributed water is the main source of water for evapotranspiration in the dry summer, and its relevance increases with decreasing water availability. Thus, the spatial coverage and distribution of tree clumps is regulated by the soil water available in the inter-tree clump areas, suggesting that, if Mediterranean areas dry as predicted by IPCC, the proportion of an area occupied by tree clumps will shrink in the future, with predictable consequences to ecosystem services.

Dig It! The Secrets of Soil

Science.gov Websites

It! The Secrets of Soil Come and Explore! Discover the amazing world of soils with images and information from the Dig It! The Secrets of Soil exhibit from the Smithsonian's National Museum of Natural and new web content will be added over the coming months including a new soil blog. New Interactives

The Living Soil: Exploring Soil Science and Sustainable Agriculture with Your Guide, The Earthworm. Unit I.

ERIC Educational Resources Information Center

Weber, Eldon C.; And Others

This instructional packet introduces students to soil biology, ecology, and specific farming practices that promote sustainable agriculture. It helps students to discover the role of earthworms in improving the environment of all other soil-inhabiting organisms and in making the soil more fertile. The activities (classroom as well as outdoor)…

Tree root dynamics in montane and sub-alpine mixed forest patches.

PubMed

Wang, Y; Kim, J H; Mao, Z; Ramel, M; Pailler, F; Perez, J; Rey, H; Tron, S; Jourdan, C; Stokes, A

2018-02-28

The structure of heterogeneous forests has consequences for their biophysical environment. Variations in the local climate significantly affect tree physiological processes. We hypothesize that forest structure also alters tree root elongation and longevity through temporal and spatial variations in soil temperature and water potential. We installed rhizotrons in paired vegetation communities of closed forest (tree islands) and open patches (canopy gaps), along a soil temperature gradient (elevations of 1400, 1700 and 2000 m) in a heterogeneous mixed forest. We measured the number of growing tree roots, elongation and mortality every month over 4 years. The results showed that the mean daily root elongation rate (RER) was not correlated with soil water potential but was significantly and positively correlated with soil temperature between 0 and 8 °C only. The RER peaked in spring, and a smaller peak was usually observed in the autumn. Root longevity was dependent on altitude and the season in which roots were initiated, and root diameter was a significant factor explaining much of the variability observed. The finest roots usually grew faster and had a higher risk of mortality in gaps than in closed forest. At 2000 m, the finest roots had a higher risk of mortality compared with the lower altitudes. The RER was largely driven by soil temperature and was lower in cold soils. At the treeline, ephemeral fine roots were more numerous, probably in order to compensate for the shorter growing season. Differences in soil climate and root dynamics between gaps and closed forest were marked at 1400 and 1700 m, but not at 2000 m, where canopy cover was more sparse. Therefore, heterogeneous forest structure and situation play a significant role in determining root demography in temperate, montane forests, mostly through impacts on soil temperature.

Using the Electromagnetic Induction Method to Connect Spatial Vegetation Distributions with Soil Water and Salinity Dynamics on Steppe Grassland

NASA Astrophysics Data System (ADS)

Jiang, Z.; Li, X.; Wu, H.

2014-12-01

In arid and semi-arid areas, plant growth and productivity are obviously affected by soil water and salinity. But it is not easy to acquire the spatial and temporal dynamics of soil water and salinity by traditional field methods because of the heterogeneity in their patterns. Electromagnetic induction (EMI), for its rapid character, can provide a useful way to solve this problem. Grassland dominated by Achnatherum splendens is an important ecosystem near the Qinghai-Lake watershed on the Qinghai-Tibet Plateau in northwestern China. EMI surveys were conducted for electrical conductivity (ECa) at an intermediate habitat scale (a 60×60 m experimental area) of A. splendens steppe for 18 times (one day only for one time) during the 2013 growing season. And twenty sampling points were established for the collection of soil samples for soil water and salinity, which were used for calibration of ECa. In addition, plant species, biomass and spatial patterns of vegetation were also sampled. The results showed that ECa maps exhibited distinctly spatial differences because of variations in soil moisture. And soil water was the main factor to drive salinity patterns, which in turn affected ECa values. Moreover, soil water and salinity could explain 82.8% of ECa changes due to there was a significant correlation (P<0.01) between ECa, soil water and salinity. Furthermore, with higher ECa values closer to A. splendens patches at the experimental site, patterns of ECa images showed clearly temporal stability, which were extremely corresponding with the spatial pattern of vegetation. A. splendens patches that accumulated infiltrating water and salinity and thus changed long-term soil properties, which were considered as "reservoirs" and were deemed responsible for the temporal stability of ECa images. Hence, EMI could be an indicator to locate areas of decreasing or increasing of water and to reveal soil water and salinity dynamics through repeated ECa surveys.

Scale-specific correlations between habitat heterogeneity and soil fauna diversity along a landscape structure gradient.

PubMed

Vanbergen, Adam J; Watt, Allan D; Mitchell, Ruth; Truscott, Anne-Marie; Palmer, Stephen C F; Ivits, Eva; Eggleton, Paul; Jones, T Hefin; Sousa, José Paulo

2007-09-01

Habitat heterogeneity contributes to the maintenance of diversity, but the extent that landscape-scale rather than local-scale heterogeneity influences the diversity of soil invertebrates-species with small range sizes-is less clear. Using a Scottish habitat heterogeneity gradient we correlated Collembola and lumbricid worm species richness and abundance with different elements (forest cover, habitat richness and patchiness) and qualities (plant species richness, soil variables) of habitat heterogeneity, at landscape (1 km(2)) and local (up to 200 m(2)) scales. Soil fauna assemblages showed considerable turnover in species composition along this habitat heterogeneity gradient. Soil fauna species richness and turnover was greatest in landscapes that were a mosaic of habitats. Soil fauna diversity was hump-shaped along a gradient of forest cover, peaking where there was a mixture of forest and open habitats in the landscape. Landscape-scale habitat richness was positively correlated with lumbricid diversity, while Collembola and lumbricid abundances were negatively and positively related to landscape spatial patchiness. Furthermore, soil fauna diversity was positively correlated with plant diversity, which in turn peaked in the sites that were a mosaic of forest and open habitat patches. There was less evidence that local-scale habitat variables (habitat richness, tree cover, plant species richness, litter cover, soil pH, depth of organic horizon) affected soil fauna diversity: Collembola diversity was independent of all these measures, while lumbricid diversity positively and negatively correlated with vascular plant species richness and tree canopy density. Landscape-scale habitat heterogeneity affects soil diversity regardless of taxon, while the influence of habitat heterogeneity at local scales is dependent on taxon identity, and hence ecological traits, e.g. body size. Landscape-scale habitat heterogeneity by providing different niches and refuges, together with passive dispersal and population patch dynamics, positively contributes to soil faunal diversity.

When is it safe to stop patching?

PubMed

Oster, J G; Simon, J W; Jenkins, P

1990-12-01

Prior reports indicate that about half of amblyopia patients successfully treated with occlusion subsequently require maintenance patching. This retrospective study was designed to discover what clinical characteristics might be associated with a stable outcome following primary occlusion. Included were 188 patients who: (1) had amblyopia related to strabismus, anisometropia or media opacity; and (2) were followed up for at least one year after successful primary occlusion. Patients who did not comply with treatment or who did not achieve equal vision were excluded. Their ages ranged from 2 to 119 months (mean 29 months). Eighty-eight patients (47%) who required no further occlusion were designated the clinically stable group (CSG). The remaining 100 (53%), who subsequently needed patching because of unequal acuities, constituted the maintenance patching group (MPG). CSG patients were older at the beginning (mean 33 months) and at the end (mean 40 months) of primary occlusion than were MPG patients (means 26 and 31 months). Primary occlusion was more likely to have been discontinued because of equal recognition acuities in CSG patients, while equal fixation behaviour or preferential looking was more likely in MPG patients. Distribution of diagnoses, severity of amblyopia at presentation, and length of follow-up were similar in the two groups. Visual outcomes at last follow-up were slightly better in the CSG (p = 0.002). We conclude that, in general, patching can be safely discontinued after the third birthday. Although follow-up after primary occlusion is important to ensure stable results in all patients, preverbal children are more likely to require maintenance patching.

Monitoring of soil and air-rock temperatures in the Western Massif of the Picos de Europa (Spain)

NASA Astrophysics Data System (ADS)

Ruiz-Fernández, Jesús; Vieira, Gonçalo; García, Cristina

2013-04-01

In this paper we study the ground thermal regime and air-rock interface in the Western Massif of the Picos de Europa (Cantabrian Range, Spain). This calcareous massif is highly affected by karstification processes. Quaternary glaciers, fluvio-torrential processes and present-day periglacial processes also contribute to explain the landforms present in this massif. Up to 9 dataloggers were installed during 6 years in different sites in terms of altitude, orientation, slope and geomorpolohical setting recording temperatures every two hours. The number of freeze-thaw cycles in the soil(between 0 and 16) was controlled by the depth of the snow cover. The temperatures in the interface rock-air showed between 30-60 cycles, reaching 119 and 130 during the year 2007-2008. Extreme minimum temperatures in the soil oscillate between 0.3 and -6.3, while in the rocky walls the loggers recorded temperatures between -7.3 and -14.3°C. Monitoring of soil temperatures around the ice patch - the only one in the massif today - resulted in slightly negative mean annual temperatures. These conditions may reveal the existence of sporadic permafrost on debris that cover the ice patch. Both the buried ice and the permafrost are in disequilibrium with the current environmental conditions of the massif.

Photodetector Development for the Wheel Abrasion Experiment on the Sojourner Microrover of the Mars Pathfinder Mission

NASA Technical Reports Server (NTRS)

Wilt, David M.; Jenkins, Phillip P.; Scheiman, David A.

1997-01-01

On-board the Mars Pathfinder spacecraft, launched in December of 1996, is a small roving vehicle named Sojourner. On Sojourner is an experiment to determine the abrasive characteristics of the Martian surface, called the Wheel Abrasion Experiment (WAE). The experiment works as follows: one of the wheels of the rover has a strip of black anodized aluminum bonded to the tread. The aluminum strip has thin coatings of aluminum, nickel and platinum deposited in patches. There are five (5) patches or samples of each metal, and the patches range in thickness from 200 A to 1000 A. The different metals were chosen for their differing hardness and their environmental stability. As the wheel is spun in the Martian soil, the thin patches of metal are abraded away, exposing the black anodization. The abrasion is monitored by measuring the amount of light reflected off of the samples. A photodetector was developed for this purpose, and that is the subject of this paper.

Self-Replication of Localized Vegetation Patches in Scarce Environments

NASA Astrophysics Data System (ADS)

Bordeu, Ignacio; Clerc, Marcel G.; Couteron, Piere; Lefever, René; Tlidi, Mustapha

2016-09-01

Desertification due to climate change and increasing drought periods is a worldwide problem for both ecology and economy. Our ability to understand how vegetation manages to survive and propagate through arid and semiarid ecosystems may be useful in the development of future strategies to prevent desertification, preserve flora—and fauna within—or even make use of scarce resources soils. In this paper, we study a robust phenomena observed in semi-arid ecosystems, by which localized vegetation patches split in a process called self-replication. Localized patches of vegetation are visible in nature at various spatial scales. Even though they have been described in literature, their growth mechanisms remain largely unexplored. Here, we develop an innovative statistical analysis based on real field observations to show that patches may exhibit deformation and splitting. This growth mechanism is opposite to the desertification since it allows to repopulate territories devoid of vegetation. We investigate these aspects by characterizing quantitatively, with a simple mathematical model, a new class of instabilities that lead to the self-replication phenomenon observed.

Not so hot: Rapid recovery of soil temperature and respiration following tornado damage, regardless of disturbance severity

NASA Astrophysics Data System (ADS)

Nagendra, U.; Peterson, C.

2013-12-01

Forest disturbances such as tornadoes are expected to raise soil temperatures and increase soil respiration. Opening canopy gaps allows solar radiation to heat the forest floor, and damaged plant roots provide fuel for decomposition. Patches of disturbed forest can range from low severity (some defoliation, broken branches) to high severity (uprooted or snapped trees). Disturbance severity affects plant population and community processes, such as regeneration mode, species diversity, and community structure. We expect disturbance severity to also affect ecosystem processes such as soil respiration. Severe disturbances cause more distinct, and often larger, canopy gaps than mild disturbances, and damage more standing biomass, both above- and below-ground. We would expect these larger gaps and greater litter amounts to increase soil temperature and respiration in more severely disturbed forest patches. In April 2011, a moderate (EF-3) tornado damaged portions of the Chattahoochee National Forest in NE Georgia, USA. Our lab has been characterizing the damage and regeneration in sections of the forest since summer 2011. In Spring 2013, we installed 4 iButton temperature sensors in each of 14 plots across a range of disturbance severity (for a total of 56 sensors). Severity was determined by percent of initial tree basal area downed by the tornado, and ranged from 8% to 100% basal area down. The iButtons monitored soil temperature at a depth of 5 cm every hour for 85 days. In July 2013, integrated 24-hour soil respiration was measured at the same locations using soda lime absorption in sealed PVC collars. Soil temperature at 5 cm averaged 12.66 °C. Contrary to expectations, average daily temperatures did not increase with greater plot damage severity (R2 = 0.001). Daily variation was only slightly higher in plots of very high severity. Overall, soil temperatures appeared to have returned to pre-disturbance temperatures more quickly than expected. Results for upcoming months will be presented at the meeting. Soil respiration was relatively high in all plots (4.49 +/-1.19 g C m-2 hr-1). Contrary to expectations, respiration did not vary significantly with plot damage severity (R2 = 0.0676). The temperature and respiration data together suggest potentially rapid ecosystem recovery after these types of wind disturbances. The flush of understory growth in open patches may insulate the forest floor from solar radiation, even though the forest canopy is still open. These unexpected preliminary results may indicate that ecosystem processes in southern forests are more resilient to disturbances than previously thought. Although forests become carbon sinks immediately after disturbances, they may return to carbon neutral or sink status relatively quickly, given the right circumstances.

Monitoring restoration impacts to endemic plant communities in soil inclusions of arid environments

USGS Publications Warehouse

Louhaichi, Mounir; Pyke, David A.; Shaff, Scott E.; Johnson, Douglas E.

2013-01-01

Soil inclusions are small patches of soil with different properties than the surrounding, dominant soil. In arid areas of western North America, soil inclusions called slickspot soils are saltier than adjacent soil and support different types of native vegetation. Traditional sagebrush restoration efforts, such as using drills to plant seeds or herbicides to control invasive vegetation, may damage sensitive slickspot soil and supporting vegetation. USGS scientists David Pyke and Scott Shaff and collaborators monitored slickspot size and cover of endangered slickspot peppergrass for two years to see if they were affected by the application of the herbicide glyphosate or by a minimum-till drill in the Snake River Plain, ID. The researchers examined the use of aerial photographs versus on-the-ground measurements and concluded that slickspot sizes were not affected by these treatments. Remote sensing using aerial photographs proved a useful method for mapping slickspot soils.

Ecological sites: Organizational tool for outcome-based land management

USDA-ARS?s Scientific Manuscript database

Managing for sustained ecosystem services from rangelands involves complex interactions among soils, plant communities, topography and the prevailing environmental conditions across different land forms from local patches to entire landscapes. This complexity has contributed to prior difficulties in...

Second Test Rover Added for Free Spirit Tests

NASA Image and Video Library

2009-08-21

Testing at NASA Jet Propulsion Laboratory in August 2009 is assessing possible maneuvers that the Mars rover Spirit might use for escaping from a patch of soft soil where it is embedded at a Martian site called Troy.

Aeolian Sediment Trapping Efficiencies of Sparse Vegetation and its Ecohydrological Consequences in Drylands

NASA Astrophysics Data System (ADS)

Gonzales, H. B.; Ravi, S.; Li, J. J.; Sankey, J. B.

2016-12-01

Hydrological and aeolian processes control the redistribution of soil and nutrients in arid and semi arid environments thereby contributing to the formation of heterogeneous patchy landscapes with nutrient-rich resource islands surrounded by nutrient depleted bare soil patches. The differential trapping of soil particles by vegetation canopies may result in textural changes beneath the vegetation, which, in turn, can alter the hydrological processes such as infiltration and runoff. We conducted infiltration experiments and soil grain size analysis of several shrub (Larrea tridentate) and grass (Bouteloua eriopoda) microsites and in a heterogeneous landscape in the Chihuahuan desert (New Mexico, USA). Our results indicate heterogeneity in soil texture and infiltration patterns under grass and shrub microsites. We assessed the trapping effectiveness of vegetation canopies using a novel computational fluid dynamics (CFD) approach. An open-source software (OpenFOAM) was used to validate the data gathered from particle size distribution (PSD) analysis of soil within the shrub and grass microsites and their porosities (91% for shrub and 68% for grass) determined using terrestrial LiDAR surveys. Three-dimensional architectures of the shrub and grass were created using an open-source computer-aided design (CAD) software (Blender). The readily available solvers within the OpenFOAM architecture were modified to test the validity and optimize input parameters in assessing trapping efficiencies of sparse vegetation against aeolian sediment flux. The results from the numerical simulations explained the observed textual changes under grass and shrub canopies and highlighted the role of sediment trapping by canopies in structuring patch-scale hydrological processes.

Protozoa enhance foraging efficiency of arbuscular mycorrhizal fungi for mineral nitrogen from organic matter in soil to the benefit of host plants.

PubMed

Koller, Robert; Rodriguez, Alia; Robin, Christophe; Scheu, Stefan; Bonkowski, Michael

2013-07-01

Dead organic matter (OM) is a major source of nitrogen (N) for plants. The majority of plants support N uptake by symbiosis with arbuscular mycorrhizal (AM) fungi. Mineralization of N is regulated by microfauna, in particular, protozoa grazing on bacteria. We hypothesized that AM fungi and protozoa interactively facilitate plant N nutrition from OM. In soil systems consisting of an OM patch and a root compartment, plant N uptake and consequences for plant carbon (C) allocation were investigated using stable isotopes. Protozoa mobilized N by consuming bacteria, and the mobilized N was translocated via AM fungi to the host plant. The presence of protozoa in both the OM and root compartment stimulated photosynthesis and the translocation of C from the host plant via AM fungi into the OM patch. This stimulated microbial activity in the OM patch, plant N uptake from OM and doubled plant growth. The results indicate that protozoa increase plant growth by both mobilization of N from OM and by protozoa-root interactions, resulting in increased C allocation to roots and into the rhizosphere, thereby increasing plant nutrient exploitation. Hence, mycorrhizal plants need to interact with protozoa to fully exploit N resources from OM. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

[Impacts of landscape patterns on heavy metal contamination of agricultural top soils in the Pearl River Delta, South China].

PubMed

Li, Cheng; Li, Fang-bai; Wu, Zhi-feng; Cheng, Jiong

2015-04-01

Landscape patterns are known to influence many ecological processes, but the relationship between landscape patterns and soil pollution processes is not well understood. Based on 300 top soil samples, land use and cover map for the Pearl River Delta (PRD) of 2005, this study explored the characteristics and spatial pattern of heavy metal contamination of agricultural top soils and examined the impacts of landscape patterns on the heavy metal contamination in the buffers of soil samples. Research methods included geostatistical analysis, landscape pattern analysis, single-factor pollution indices, and Pearson correlation analysis. We found that: 1) out of the 235 agricultural soil samples, 3.8%, 0.4%, 17.0% and 9.4% samples exceeded the Grade II national standard for As, Pb, Cd and Ni concentrations respectively. High pollution levels were found in three cities, Guangzhou, Foshan and Zhongshan; 2) soils in the farmland were more polluted than those in the forest and orchard land, and there were no differences among different agricultural land use types in contamination level of each heavy metal (except Cd); and 3) the proportion, mean patch area as well as the degree of landscape fragmentation, landscape-level structural complexity and aggregation/connectivity of water at the buffer zone were significantly positively correlated with the contamination level of each of the four heavy metals in agricultural top soils. Part of the landscape pattern of urban land in the buffer zone also positively correlated with Pb and Cd levels (P < 0.05). On the contrary, the proportion, mean patch area and aggregation degree of forest land negatively correlated with soil Pb and Ni levels (P < 0.05); and 4) the closer to the industry land were the soil samples, the more polluted the soils were for Pb, Cd and Ni. Only landscape diversity was found to be positively correlated with soil Cd contamination. The study results provide new information and scientific basis for heavy metal pollution control and remediation, especially for agricultural soils in the PRD.

Additive value of patch testing custom epoxy materials from the workplace at the occupational disease specialty clinic in Toronto.

PubMed

Houle, Marie-Claude; Holness, D Linn; Dekoven, Joel; Skotnicki, Sandy

2012-01-01

Allergic contact dermatitis (ACD) to epoxy resins is one of the major causes of occupationally induced ACD. Testing of custom epoxy materials from the workplace is often performed to diagnose ACD. The objective of this study was to investigate the additive value of patch testing custom-made epoxy materials. We retrospectively analyzed outcomes of 24 patients who were tested to custom epoxy resin materials between January 2002 and July 2011. For 11 patients (46%), the testing of their materials from work had no additional value (negative results). For 13 patients (54%), there was an additional value of testing custom allergens. Of those, 7 patients (54%) had positive reactions to custom epoxy materials that reinforced the test results found with the commercially available allergens, and 6 (46%) patients had positive reactions only to custom epoxy materials. Therefore, for 6 patients (25%), there was a definite additive value of testing custom epoxy materials because the allergy was discovered with custom testing and not with the commercially available allergens. Because of the high percentage (54%) of patients with additive value of patch testing custom epoxy materials, we think that the inclusion of actual workplace epoxy materials should be strongly considered when patch testing patients with occupational epoxy exposure.

Travel optimization by foraging bumblebees through readjustments of traplines after discovery of new feeding locations.

PubMed

Lihoreau, Mathieu; Chittka, Lars; Raine, Nigel E

2010-12-01

Animals collecting resources that replenish over time often visit patches in predictable sequences called traplines. Despite the widespread nature of this strategy, we still know little about how spatial memory develops and guides individuals toward suitable routes. Here, we investigate whether flower visitation sequences by bumblebees Bombus terrestris simply reflect the order in which flowers were discovered or whether they result from more complex navigational strategies enabling bees to optimize their foraging routes. We analyzed bee flight movements in an array of four artificial flowers maximizing interfloral distances. Starting from a single patch, we sequentially added three new patches so that if bees visited them in the order in which they originally encountered flowers, they would follow a long (suboptimal) route. Bees' tendency to visit patches in their discovery order decreased with experience. Instead, they optimized their flight distances by rearranging flower visitation sequences. This resulted in the development of a primary route (trapline) and two or three less frequently used secondary routes. Bees consistently used these routes after overnight breaks while occasionally exploring novel possibilities. We discuss how maintaining some level of route flexibility could allow traplining animals to cope with dynamic routing problems, analogous to the well-known traveling salesman problem.

Spatial patterns and natural recruitment of native shrubs in a semi-arid sandy land.

PubMed

Wu, Bo; Yang, Hongxiao

2013-01-01

Passive restoration depending on native shrubs is an attractive approach for restoring desertified landscapes in semi-arid sandy regions. We sought to understand the relationships between spatial patterns of native shrubs and their survival ability in sandy environments. Furthermore, we applied our results to better understand whether passive restoration is feasible for desertified landscapes in semi-arid sandy regions. The study was conducted in the semi-arid Mu Us sandy land of northern China with the native shrub Artemisia ordosica. We analyzed population structures and patterns of A. ordosica at the edges and centers of land patches where sand was stabilized by A. ordosica-dominated vegetation. Saplings were more aggregated than adults, and both were more aggregated at the patch edges than at the patch centers. At the patch edges, spatial association of the saplings with the adults was mostly positive at distances 0.3-6.6 m, and turned from positive to neutral, and even negative, at other distances. At the patch centers, the saplings were spaced almost randomly around the adults, and their distances from the adults did not seem to affect their locations. A greater number of A. ordosica individuals emerged at the patch edges than at the patch centers. Such patterns may have resulted from their integrative adjustment to specific conditions of soil water supply and sand drift intensity. These findings suggest that in semi-arid sandy regions, native shrubs that are well-adapted to local environments may serve as low-cost and competent ecological engineers that can promote the passive restoration of surrounding patches of mobile sandy land.

Contrasts between whole-plant and local nutrient levels determine root growth and death in Ailanthus altissima (Simaroubaceae).

PubMed

Hu, Fengqin; Mou, Paul P; Weiner, Jacob; Li, Shuo

2014-05-01

• There is an ongoing debate about the importance of whole-plant control vs. local modular mechanisms for root growth. We conducted a split-root experiment with different patch/background levels of nitrogen to examine whether local root growth and death are controlled by local resource levels or at the whole-plant level.• Three microrhizotrons with 0, 10, and 100 µg N/g growth medium levels (74 g growth medium each) were attached to pots of high or low soil N in which one Ailanthus altissima individual was growing. One fine root was guided into each of the microrhizotrons and photographed every 4 d. Plants were harvested after 28 d; root growth and mortality in the microrhizotrons were recorded. Changes in root length, number of laterals, and interlateral length were determined from the photos and analyzed.• While overall plant growth was influenced by background N level, both patch and background N levels influenced root growth and mortality in patches. Local roots proliferated most when the patch N level was high and background level low, and they proliferated least and showed highest mortality when patch N was low and the background level high.• The fate of roots growing in a patch is influenced by the resource environment of the plant's other roots as well as the resource levels in the patch itself. Thus, the growth and death of roots in patches is determined by both modular and whole-plant mechanisms. © 2014 Botanical Society of America, Inc.

Soil Is More than Just Dirt

ERIC Educational Resources Information Center

Taylor, Carrie; Graves, C. John

2010-01-01

This article describes a series of activities in which students investigate soil, culminating in the biomimicry of reducing landfill waste. After students learned about soil's ecosystem structure and the function of its food web with nutrient cycling and decomposition, they discovered that they know a solution to reduce the trash in landfills by…

Dig In! Hands-On Soil Investigations.

ERIC Educational Resources Information Center

National Science Teachers Association, Arlington, VA.

This guide is geared toward K-4 science teachers, supervisors, and environmental educators. The guide seeks to promote a better understanding and appreciation of soil. Students explore the land around them as they investigate the origins of soil and how it benefits our ecosystems and environment and discover the various habitats characterized by…

Rediscovering sperm ion channels with the patch-clamp technique

PubMed Central

Kirichok, Yuriy; Lishko, Polina V.

2011-01-01

Upon ejaculation, mammalian spermatozoa have to undergo a sequence of physiological transformations within the female reproductive tract that will allow them to reach and fertilize the egg. These include initiation of motility, hyperactivation of motility and perhaps chemotaxis toward the egg, and culminate in the acrosome reaction that permits sperm to penetrate the protective vestments of the egg. These physiological responses are triggered through the activation of sperm ion channels that cause elevations of sperm intracellular pH and Ca2+ in response to certain cues within the female reproductive tract. Despite their key role in sperm physiology and their absolute requirement for the process of fertilization, sperm ion channels remain poorly understood due to the extreme difficulty in application of the patch-clamp technique to spermatozoa. This review covers the topic of sperm ion channels in the following order: first, we discuss how the intracellular Ca2+ and pH signaling mediated by sperm ion channels controls sperm behavior during the process of fertilization. Then, we briefly cover the history of the methodology to study sperm ion channels, which culminated in the recent development of a reproducible whole-cell patch-clamp technique for mouse and human cells. We further discuss the main approaches used to patch-clamp mature mouse and human spermatozoa. Finally, we focus on the newly discovered sperm ion channels CatSper, KSper (Slo3) and HSper (Hv1), identified by the sperm patch-clamp technique. We conclude that the patch-clamp technique has markedly improved and shifted our understanding of the sperm ion channels, in addition to revealing significant species-specific differences in these channels. This method is critical for identification of the molecular mechanisms that control sperm behavior within the female reproductive tract and make fertilization possible. PMID:21642646

The role of landscape-dependent disturbance and dispersal in metapopulation persistence.

PubMed

Elkin, Ché M; Possingham, Hugh

2008-10-01

The fundamental processes that influence metapopulation dynamics (extinction and recolonization) will often depend on landscape structure. Disturbances that increase patch extinction rates will frequently be landscape dependent such that they are spatially aggregated and have an increased likelihood of occurring in some areas. Similarly, landscape structure can influence organism movement, producing asymmetric dispersal between patches. Using a stochastic, spatially explicit model, we examine how landscape-dependent correlations between dispersal and disturbance rates influence metapopulation dynamics. Habitat patches that are situated in areas where the likelihood of disturbance is low will experience lower extinction rates and will function as partial refuges. We discovered that the presence of partial refuges increases metapopulation viability and that the value of partial refuges was contingent on whether dispersal was also landscape dependent. Somewhat counterintuitively, metapopulation viability was reduced when individuals had a preponderance to disperse away from refuges and was highest when there was biased dispersal toward refuges. Our work demonstrates that landscape structure needs to be incorporated into metapopulation models when there is either empirical data or ecological rationale for extinction and/or dispersal rates being landscape dependent.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eberhard, Jeremy; Onder, Zeynep; Moroianu, Junona, E-mail: moroianu@bc.edu

We previously discovered that nuclear import of high risk HPV16 E7 is mediated by a cNLS located within the zinc-binding domain via a pathway that is independent of karyopherins/importins (Angeline et al., 2003; Knapp et al., 2009). In this study we continued our characterization of the cNLS and nuclear import pathway of HPV16 E7. We find that an intact zinc-binding domain is essential for the cNLS function in mediating nuclear import of HPV16 E7. Mutagenesis of cysteine residues to alanine in each of the two CysXXCys motifs involved in zinc-binding changes the nuclear localization of the EGFP-16E7 and 2xEGFP-16E7 mutants.more » We further discover that a patch of hydrophobic residues, {sub 65}LRLCV{sub 69}, within the zinc-binding domain of HPV16 E7 mediates its nuclear import via hydrophobic interactions with the FG domain of the central channel nucleoporin Nup62. - Highlights: • An intact zinc-binding domain is essential for the nuclear localization of HPV16 E7. • Identification of a hydrophobic patch that is critical for the nuclear import of HPV16 E7. • HPV16 E7 interacts via its zinc-binding domain with the FG domain of Nup62.« less

Ripples in The Soil

NASA Technical Reports Server (NTRS)

2004-01-01

This is a three-dimensional stereo anaglyph of an image taken by the front navigation camera onboard the Mars Exploration Rover Spirit, showing an interesting patch of rippled soil. Spirit took this image on sol 37 (Feb. 9, 2004) after completing the longest drive ever made by a rover on another planet - 21.2 meters (69.6 feet). On sol 38 scientists plan to investigate this interesting location with the microscopic imager and Moessbauer spectrometer on Spirit's instrument deployment device.

Spatial Patterns and Natural Recruitment of Native Shrubs in a Semi-arid Sandy Land

PubMed Central

Wu, Bo; Yang, Hongxiao

2013-01-01

Passive restoration depending on native shrubs is an attractive approach for restoring desertified landscapes in semi-arid sandy regions. We sought to understand the relationships between spatial patterns of native shrubs and their survival ability in sandy environments. Furthermore, we applied our results to better understand whether passive restoration is feasible for desertified landscapes in semi-arid sandy regions. The study was conducted in the semi-arid Mu Us sandy land of northern China with the native shrub Artemisia ordosica. We analyzed population structures and patterns of A. ordosica at the edges and centers of land patches where sand was stabilized by A. ordosica-dominated vegetation. Saplings were more aggregated than adults, and both were more aggregated at the patch edges than at the patch centers. At the patch edges, spatial association of the saplings with the adults was mostly positive at distances 0.3–6.6 m, and turned from positive to neutral, and even negative, at other distances. At the patch centers, the saplings were spaced almost randomly around the adults, and their distances from the adults did not seem to affect their locations. A greater number of A. ordosica individuals emerged at the patch edges than at the patch centers. Such patterns may have resulted from their integrative adjustment to specific conditions of soil water supply and sand drift intensity. These findings suggest that in semi-arid sandy regions, native shrubs that are well-adapted to local environments may serve as low-cost and competent ecological engineers that can promote the passive restoration of surrounding patches of mobile sandy land. PMID:23505489

Spirit Near 'Stapledon' on Sol 1802 (Vertical)

NASA Technical Reports Server (NTRS)

2009-01-01

NASA Mars Exploration Rover Spirit used its navigation camera for the images assembled into this full-circle view of the rover's surroundings during the 1,802nd Martian day, or sol, (January 26, 2009) of Spirit's mission on the surface of Mars. North is at the top.

This view is presented as a vertical projection with geometric seam correction.

Spirit had driven down off the low plateau called 'Home Plate' on Sol 1782 (January 6, 2009) after spending 12 months on a north-facing slope on the northern edge of Home Plate. The position on the slope (at about the 9-o'clock position in this view) tilted Spirit's solar panels toward the sun, enabling the rover to generate enough electricity to survive its third Martian winter. Tracks at about the 11-o'clock position of this panorama can be seen leading back to that 'Winter Haven 3' site from the Sol 1802 position about 10 meters (33 feet) away. For scale, the distance between the parallel wheel tracks is about one meter (40 inches).

Where the receding tracks bend to the left, a circular pattern resulted from Spirit turning in place at a soil target informally named 'Stapledon' after William Olaf Stapledon, a British philosopher and science-fiction author who lived from 1886 to 1950. Scientists on the rover team suspected that the soil in that area might have a high concentration of silica, resembling a high-silica soil patch discovered east of Home Plate in 2007. Bright material visible in the track furthest to the right was examined with Spirit's alpha partical X-ray spectrometer and found, indeed, to be rich in silica.

The team laid plans to drive Spirit from this Sol 1802 location back up onto Home Plate, then southward for the rover's summer field season.

Spirit Near 'Stapledon' on Sol 1802

NASA Technical Reports Server (NTRS)

2009-01-01

NASA Mars Exploration Rover Spirit used its navigation camera for the images assembled into this full-circle view of the rover's surroundings during the 1,802nd Martian day, or sol, (January 26, 2009) of Spirit's mission on the surface of Mars. South is at the center; north is at both ends.

Spirit had driven down off the low plateau called 'Home Plate' on Sol 1782 (January 6, 2009) after spending 12 months on a north-facing slope on the northern edge of Home Plate. The position on the slope (at about the 9-o'clock position in this view) tilted Spirit's solar panels toward the sun, enabling the rover to generate enough electricity to survive its third Martian winter. Tracks at about the 11-o'clock position of this panorama can be seen leading back to that 'Winter Haven 3' site from the Sol 1802 position about 10 meters (33 feet) away. For scale, the distance between the parallel wheel tracks is about one meter (40 inches).

Where the receding tracks bend to the left, a circular pattern resulted from Spirit turning in place at a soil target informally named 'Stapledon' after William Olaf Stapledon, a British philosopher and science-fiction author who lived from 1886 to 1950. Scientists on the rover team suspected that the soil in that area might have a high concentration of silica, resembling a high-silica soil patch discovered east of Home Plate in 2007. Bright material visible in the track furthest to the right was examined with Spirit's alpha partical X-ray spectrometer and found, indeed, to be rich in silica.

The team laid plans to drive Spirit from this Sol 1802 location back up onto Home Plate, then southward for the rover's summer field season.

This view is presented as a cylindrical projection with geometric seam correction.

Spirit Near 'Stapledon' on Sol 1802 (Polar)

NASA Technical Reports Server (NTRS)

2009-01-01

NASA Mars Exploration Rover Spirit used its navigation camera for the images assembled into this full-circle view of the rover's surroundings during the 1,802nd Martian day, or sol, (January 26, 2009) of Spirit's mission on the surface of Mars. North is at the top.

This view is presented as a polar projection with geometric seam correction.

Spirit had driven down off the low plateau called 'Home Plate' on Sol 1782 (January 6, 2009) after spending 12 months on a north-facing slope on the northern edge of Home Plate. The position on the slope (at about the 9-o'clock position in this view) tilted Spirit's solar panels toward the sun, enabling the rover to generate enough electricity to survive its third Martian winter. Tracks at about the 11-o'clock position of this panorama can be seen leading back to that 'Winter Haven 3' site from the Sol 1802 position about 10 meters (33 feet) away. For scale, the distance between the parallel wheel tracks is about one meter (40 inches).

Where the receding tracks bend to the left, a circular pattern resulted from Spirit turning in place at a soil target informally named 'Stapledon' after William Olaf Stapledon, a British philosopher and science-fiction author who lived from 1886 to 1950. Scientists on the rover team suspected that the soil in that area might have a high concentration of silica, resembling a high-silica soil patch discovered east of Home Plate in 2007. Bright material visible in the track furthest to the right was examined with Spirit's alpha partical X-ray spectrometer and found, indeed, to be rich in silica.

The team laid plans to drive Spirit from this Sol 1802 location back up onto Home Plate, then southward for the rover's summer field season.

Self-Replication of Localized Vegetation Patches in Scarce Environments

PubMed Central

Bordeu, Ignacio; Clerc, Marcel G.; Couteron, Piere; Lefever, René; Tlidi, Mustapha

2016-01-01

Desertification due to climate change and increasing drought periods is a worldwide problem for both ecology and economy. Our ability to understand how vegetation manages to survive and propagate through arid and semiarid ecosystems may be useful in the development of future strategies to prevent desertification, preserve flora—and fauna within—or even make use of scarce resources soils. In this paper, we study a robust phenomena observed in semi-arid ecosystems, by which localized vegetation patches split in a process called self-replication. Localized patches of vegetation are visible in nature at various spatial scales. Even though they have been described in literature, their growth mechanisms remain largely unexplored. Here, we develop an innovative statistical analysis based on real field observations to show that patches may exhibit deformation and splitting. This growth mechanism is opposite to the desertification since it allows to repopulate territories devoid of vegetation. We investigate these aspects by characterizing quantitatively, with a simple mathematical model, a new class of instabilities that lead to the self-replication phenomenon observed. PMID:27650430

Biophysical Controls over Carbon and Nitrogen Stocks in Desert Playa Wetlands

NASA Astrophysics Data System (ADS)

McKenna, O. P.; Sala, O. E.

2014-12-01

Playas are ephemeral desert wetlands situated at the bottom of closed catchments. Desert playas in the Southwestern US have not been intensively studied despite their potential importance for the functioning of desert ecosystems. We want to know which geomorphic and ecological variables control of the stock size of soil organic carbon, and soil total nitrogen in playas. We hypothesize that the magnitude of carbon and nitrogen stocks depends on: (a) catchment size, (b) catchment slope, (d) catchment vegetation cover, (e) bare-ground patch size, and (f) catchment soil texture. We chose thirty playas from across the Jornada Basin (Las Cruces, NM) ranging from 0.5-60ha in area and with varying catchment characteristics. We used the available 5m digital elevation map (DEM) to calculate the catchment size and catchment slope for these thirty playas. We measured percent cover, and patch size using the point-intercept method with three 10m transects in each catchment. We used the Bouyoucos-hydrometer soil particle analysis to determine catchment soil texture. Stocks of organic carbon and nitrogen were measured from soil samples at four depths (0-10 cm, 10-30 cm, 30-60 cm, 60-100 cm) using C/N combustion analysis. In terms of nitrogen and organic carbon storage, we found soil nitrogen values in the top 10cm ranging from 41.963-214.365 gN/m2, and soil organic carbon values in the top 10cm ranging from 594.339-2375.326 gC/m2. The results of a multiple regression analysis show a positive relationship between catchment slope and both organic carbon and nitrogen stock size (nitrogen: y= 56.801 +47.053, R2=0.621; organic carbon: y= 683.200 + 499.290x, R2= 0.536). These data support our hypothesis that catchment slope is one of factors controlling carbon and nitrogen stock in desert playas. We also applied our model to the 69 other playas of the Jornada Basin and estimated stock sizes (0-10cm) between 415.07-447.97 Mg for total soil nitrogen and 4627.99-5043.51 Mg for soil organic carbon.

Drivers of small scale variability in soil-atmosphere fluxes of CH4, N2O and CO2 in a forest soil

NASA Astrophysics Data System (ADS)

Maier, Martin; Nicolai, Clara; Wheeler, Denis; Lang, Friedeike; Paulus, Sinikka

2016-04-01

Soil-atmosphere fluxes of CH4, N2O and CO2 can vary on different spatial scales, on large scales between ecosystems but also within apparently homogenous sites. While CO2 and CH4 consumption is rather evenly distibuted in well aerated soils, the production of N2O and CH4 seems to occur at hot spots that can be associated with anoxic or suboxic conditions. Small-scale variability in soil properties is well-known from field soil assesment, affecting also soil aeration and thus theoretically, greenhouse gas fluxes. In many cases different plant species are associated with different soil conditions and vegetation mapping should therefor combined with soil mapping. Our research objective was explaining the small scale variability of greenhouse gas fluxes in an apparently homogeneous 50 years old Scots Pine stand in a former riparian flood plain.We combined greenhouse gas measurements and soil physical lab measurments with field soil assessment and vegetation mapping. Measurements were conducted with at 60 points at a plot of 30 X 30 m at the Hartheim monitoring site (SW Germany). For greenhouse gas measurements a non-steady state chamber system and laser analyser, and a photoacoustic analyser were used. Our study shows that the well aerated site was a substantial sink for atmospheric CH4 (-2.4 nmol/m² s) and also a for N2O (-0.4 nmol/m² s), but less pronounced, whereas CO2 production was a magnitude larger (2.6 μmol/m² s). The spatial variability of the CH4 consumption of the soils could be explained by the variability of the soil gas diffusivity (measured in situ + using soil cores). Deviations of this clear trend were only observed at points where decomposing woody debris was directly under the litter layer. Soil texture ranged from gravel, coarse sand, fine sand to pure silt, with coarser texture having higher soil gas diffusivity. Changes in texture were rather abrupt at some positions or gradual at other positions, and were well reflected in the vegetation structure. On patches of gravel and coarse sand there was hardly any ground vegatation, and a shrublayer was found only at silty patches Our results indicate that a stratification and regionalisation approach based on vegetation structure and soil texture represents a promising tool for the adjustment of sampling designs for soil gas flux measurement. Acknowledgement This research was financially supported by the project DFG (MA 5826/2-1).

Savoring Neopolitan

NASA Technical Reports Server (NTRS)

2004-01-01

[figure removed for brevity, see original site] Figure 1

This image from the Mars Exploration Rover Opportunity's front hazard-avoidance camera shows the rover at its Sol 53 (March 17, 2004) location within the 'Eagle Crater' landing site. Dubbed 'Neopolitan,' this location has three different soil patches: a very light unit, a dark unit, and an airbag bounce mark. Scientists are imaging each of these units as part of a crater soil survey. They hope to better understand the origin of the soils they see in the crater and the relationship of the soils to the rocks in Opportunity ledge. This image was taken on sol 52 of Opportunity's journey (March 16, 2004).

The Ice Cream Trio In Figure 1 above, the light soil unit, seen on the left, is a microscopic imager target dubbed 'Vanilla.' The dark soil unit on the right is a target dubbed 'Cookies 'n' Cream.

Fishing for Features

ScienceCinema

Heredia-Langner, Alejandro; Cort, John; Bailey, Vanessa

2018-01-16

The Fishing for Features Signature Discovery project developed a framework for discovering signature features in challenging environments involving large and complex data sets or where phenomena may be poorly characterized or understood. Researchers at PNNL have applied the framework to the optimization of biofuels blending and to discover signatures of climate change on microbial soil communities.

Fishing for Features

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heredia-Langner, Alejandro; Cort, John; Bailey, Vanessa

2016-07-21

The Fishing for Features Signature Discovery project developed a framework for discovering signature features in challenging environments involving large and complex data sets or where phenomena may be poorly characterized or understood. Researchers at PNNL have applied the framework to the optimization of biofuels blending and to discover signatures of climate change on microbial soil communities.

Fertility of the early post-eruptive surfaces of Kasatochi Island volcano

USGS Publications Warehouse

Michaelson, G. J.; Wang, Bronwen; Ping, C. L.

2016-01-01

In the four years after the 2008 eruption and burial of Kasatochi Island volcano, erosion and the return of bird activity have resulted in new and altered land surfaces and initiation of ecosystem recovery. We examined fertility characteristics of the recently deposited pyroclastic surfaces, patches of legacy pre-eruptive surface soil (LS), and a post-eruptive surface with recent bird roosting activity. Pyroclastic materials were found lacking in N, but P, K, and other macronutrients were in sufficient supply for plants. Erosion and leaching are moving mobile P and Fe downslope to deposition fan areas. Legacy soil patches that currently support plants have available-N at levels (10–22 mg N kg-1) similar to those added by birds in a recent bird roosting area. Roosting increased surface available N from <1 mg N kg-1 in the new pyroclastic surfaces to up to 42 mg N kg-1 and increased soil biological respiration of CO2 from essentially zero to a level about 40% that of the LS surface. Laboratory plant growth trials using Lupinus nootkatensis and Leymus mollis indicated that the influence of eroded and redeposited LS in amounts as little as 10% by volume mixed with new pyroclastic materials could aid plant recovery by supplying vital N and soil biota to plants as propagules are introduced to the new surface. Erosion-exposure of fertile pre-eruptive soils and erosion-mixing of pre-eruptive soils with newly erupted materials, along with inputs of nutrients from bird activities, each will exert significant influences on the surface fertility and recovery pattern of the new post-eruptive Kasatochi volcano. For this environment, these influences could help to speed recovery of a more diverse plant community by providing N (LS and bird inputs) as alternatives to relying most heavily on N-fixing plants to build soil fertility.

Modifying landscape connectivity by reducing wind driven sediment redistribution, northern Chihuahuan Desert, USA

USDA-ARS?s Scientific Manuscript database

Shrub encroachment into perennial grasslands is occurring in many arid and semi-arid parts of the world. As shrubs displace perennial grasslands, bare patches coalesce to enhance soil erosion and sediment fluxes by wind and water transport. Reducing the connectedness of these sediment transport path...

WIND CHARACTERISTICS OF MESQUITE STREETS IN THE NORTHERN CHIHUAHUAN DESERT, NEW MEXICO, USA

EPA Science Inventory

The most active areas for sand movement in the mesquite-dominated ecosystems in the northern part of the Chihuahuan Desert are elongated bare soil patches referred to as "streets." Wind properties were measured at two flat mesquite sites having highly similar sandy textures but...

Chlorine and Sulfur Volatiles from in Situ Measurements of Martian Surface Materials

NASA Astrophysics Data System (ADS)

Clark, B. C.

2014-12-01

A sentinel discovery by the first in situ measurements on Mars was the high sulfur and chlorine content of global-wide soils. A variety of circumstantial evidence led to the conclusion that soil S is in the form of sulfate, and the Cl is probably chloride. An early hypothesis states that these volatiles are emitted as gases from magmas, and quickly react with dust, soil, and exposed rocks. Subsequent determination that SNC meteorites are also samples of the martian crust revealed a significantly higher S content, as sulfide, than terrestrial igneous rocks but substantially less than in soils. The ensuing wet chemical analyses by the high-latitude Phoenix mission discovered not only chloride but also perchlorate and possibly chlorate. MSL data now also implicate perchlorate at low latitudes. Gaseous interactions may have produced amorphous material on grain surfaces without forming stoichiometric salts. Yet, when exposed to liquid water, Phoenix samples released electrolytes, indicating that the soils have not been leached by rain or fresh groundwater. Sulfate occurrences at many locations on Mars, as well as some chloride enrichments, have now been discovered by remote sensing, Landed missions have discovered Cl-enrichments and ferric, Mg, Ca and more complex sulfates as duricrust, subsurface soil horizons, sandstone evaporites, and rock coatings - most of which cannot be detected from orbit. Salt-forming volatiles affect habitability wherever they are in physical contact: physicochemical parameters (ionic strength, freezing point, water activity); S is an essential element for terrestrial organisms; perchlorate is an oxidant which can degrade some organics but also can be utilized as an energy source; the entire valence range of S-compounds has been exploited by diverse microbiota on Earth. Whether such salt-induced conditions are "extremes" of habitability depends on the relative abundance of liquid H2O.

Exchange of soil moisture between patches of wild-olive and pasture sustains evapotranspiration of a Mediterranean ecosystem in both wet and dry seasons

NASA Astrophysics Data System (ADS)

Curreli, M.; Montaldo, N.; Oren, R.

2017-12-01

Partitioning evapotranspiration in water-limited environments, such as Mediterranean ecosystems, could give information on vegetation and hydraulic dynamics. Indeed, in such ecosystems, trees may survive prolonged droughts by uptake of water by dimorphic root system: deep roots and shallower lateral roots, extending beyond the crown into inter-trees grassy areas. The water exchange between under canopy areas and treeless patches plays a crucial role on sustaining tree and grass physiological performance during droughts. The study has been performed at the Orroli site, Sardinia (Italy). The landscape is covered by patchy vegetation: wild olives trees in clumps and herbaceous species, drying to bare soil in summer. The climate is characterized by long droughts from May to October and rain events concentrated in the autumn and winter, whit a mean yearly rain of about 700 mm. A 10 m micrometeorological tower equipped with eddy-covariance system has been used for measuring water and energy surface fluxes, as well as key state variables (e.g. temperature, radiations, humidity and wind velocity). Soil moisture was measured with five soil water reflectometers (two below the olive canopy and three in the pasture). To estimate plant water use in the context of soil water dynamic, 33 Granier-type thermal dissipation probes were installed 40 cm aboveground, in representative trees over the eddy covariance footprint. Early analyses show that wild olive continue to transpire even as the soil dries and the pasture desiccates. This reveled hydraulic redistribution system through the plant and the soil, and allows to quantify the reliance of the system on horizontally and vertically differentiated soil compartments. Results shows that during light hours, until transpiration decreases in midday, shallow roots uptake deplete the shallow water content. As transpiration decreases, hydraulically redistributed water provides for both transpiration of wild olives and recharge of shallow soil layers in the inter-tree areas. This consents trees to remain physiologically active during very dry conditions and represent a mechanism of facilitation of the coexistence of tree-grass system.

Translations on North Korea, Number 553

DTIC Science & Technology

1977-09-28

in this year’s farming, the county people’s committee discussed measures to more satisfactorily supply by itself edible oil for inhabitants of the...land on which beans could be planted as a side crop among young fruit trees and discovered empty land on the periphery of medicinal herb patches...misfortunes and catastrophy to our people but still forcively occupy south Korea, and who are opposed to the nation’s unification and are running wild to

Dynamics of Soil Deflation Features in Kangerlussuaq, Greenland Revealed by Variations in Lichen Diameters on Exposed Surfaces

NASA Astrophysics Data System (ADS)

Heindel, R. C.; Kelly, M. A.; Virginia, R. A.

2013-12-01

Little is known about the pervasive soil deflation features in the Kangerlussuaq region, West Greenland, an area deglaciated between ~6,800 and 150 years ago. While the majority of the landscape is vegetated with low-lying shrubs and graminoids, wind erosion has removed loess and vegetation from distinct patches ranging in size from a few to tens of meters across, leaving the underlying glacial till or bedrock exposed. Although previous work has considered aeolian landforms and regional loess deposition along the Watson River Valley, these deflation features have not been investigated in detail. We aim to determine both the timing and mechanisms of formation of the deflation features and will examine whether these mechanisms were related to regional climatic conditions, such as increased aridity, to fluctuations in the Greenland Ice Sheet, or to other factors. Our ongoing research investigating these features includes geomorphic mapping using field observations and satellite imagery, lichenometry of the exposed surfaces, and cosmogenic nuclide dating of boulders and bedrock within and near the deflation features. Here we present initial results from our lichenometry studies. During the summer of 2013, we measured maximum lichen (Rhizocarpon sp.) diameters on boulder and bedrock surfaces in 15 soil deflation features located between Kangerlussuaq and the ice sheet margin. Lichen diameters vary from only a few millimeters at the outer margins of deflation features to multiple centimeters (maximum ~50 mm) in the centers of the unvegetated patches. This distinct pattern suggests that the outer margins of the soil deflation features are currently active. Based on a previously established lichen growth curve for Rhizocarpon sp. in West Greenland, our results indicate that the features are expanding at a rate of ~1.5 m per 100 yrs. In addition, the large lichen diameters (~40-50 mm) that occur in the centers of deflation features suggest that the formation mechanism has been ongoing for at least 300 years. Although recent observations and ecosystem models show increased productivity and shrub growth across the Arctic, expanding deflation patches could limit an increase in vegetation growth in more arid Arctic regions such as Kangerlussuaq, and may represent a tipping point to soils with persistent low productivity. Understanding how soil deflation features are related to past and current climate changes and how they impact vegetation cover and ecosystem productivity will improve our ability to predict how the Arctic will respond to future climate conditions.

Preliminary Evaluation of TM for Soils Information

NASA Technical Reports Server (NTRS)

Thompson, D. R.; Henderson, K. E.; Houston, A. G.; Pitts, D. E.

1984-01-01

Thematic mapper data acquired over Mississippi County, Arkansas, were examined for utility in separating soil associations within generally level alluvium deposited by the Mississippi River. The 0.76 to 0.90 micron (Band 4) and the 1.55 to 1.75 micron (Band 5) were found to separate the different soil associations fairly well when compared to the USDA-SCS general soil map. The thermal channel also appeared to provide information at this level. A detailed soil survey was available at the field level along with ground observations of crop type, plant height, percent cover and growth stage. Soils within the fields ranged from uniform to soils that occur as patches of sand that stand out strongly against the intermingled areas of dark soil. Examination of the digital values of individual TM bands at the field level indicates that the influence of the soil is greater in TM than it was in MSS bands. The TM appears to provide greater detail of within field variability caused by soils than MSS and thus should provide improved information relating to crop and soil properties. However, this soil influence may cause crop identification classification procedures to have to account for the soil in their algorithms.

CARA Status and Upcoming Enhancements

NASA Technical Reports Server (NTRS)

Johnson, Megan

2017-01-01

CAS 8.4.3 was deployed to operations on 13 June 2017. Discrepancies Between 3D Pc Estimates and advanced Monte Carlo Equinoctial-Sampling Pc Estimates discovered and discussed at 23 May 2017 Useras (Registered Trademark) Forum. The patch created the Reporting Pc, which is the greater value between the calculated 2D and 3D Pc values This changed the Pc reported in the CDMs to the Reporting Pc This changed the Pc reported on the Summary Report to the Reporting Pc This changed the Pc reported on Maneuver Screening Analysis (MSA) Report to the Reporting Pc. Both the 2D and 3D Pc added to the Summary Report details section The patch also updated the 3D Pc algorithm to eliminate velocity covariance from the Pc calculation This will bring 2D and 3D Pc into close alignment for vast majority of events, particularly for the events in which the 2D/3D discrepancy was found.

GAFFE: a gaze-attentive fixation finding engine.

PubMed

Rajashekar, U; van der Linde, I; Bovik, A C; Cormack, L K

2008-04-01

The ability to automatically detect visually interesting regions in images has many practical applications, especially in the design of active machine vision and automatic visual surveillance systems. Analysis of the statistics of image features at observers' gaze can provide insights into the mechanisms of fixation selection in humans. Using a foveated analysis framework, we studied the statistics of four low-level local image features: luminance, contrast, and bandpass outputs of both luminance and contrast, and discovered that image patches around human fixations had, on average, higher values of each of these features than image patches selected at random. Contrast-bandpass showed the greatest difference between human and random fixations, followed by luminance-bandpass, RMS contrast, and luminance. Using these measurements, we present a new algorithm that selects image regions as likely candidates for fixation. These regions are shown to correlate well with fixations recorded from human observers.

Invasion of Impatiens glandulifera affects terrestrial gastropods by altering microclimate

NASA Astrophysics Data System (ADS)

Ruckli, Regina; Rusterholz, Hans-Peter; Baur, Bruno

2013-02-01

Invasive species can have far-reaching impacts on ecosystems. Invasive plants may be able to change habitat structure and quality. We conducted a field experiment to examine whether the invasive plant Impatiens glandulifera affects native terrestrial gastropods. We also evaluated whether the invasive plant alters forest soil characteristics and microclimate which in turn may influence gastropod abundance. We sampled gastropods in plots installed in patches of I. glandulifera, in plots in which I. glandulifera was regularly removed by hand, and in control plots which were not yet colonized by the invasive plant. The three types of plots were equally distributed over three mixed deciduous forest areas that were slightly, moderately or heavily affected by a wind throw 11 years ago. A total of 33 gastropod species were recorded. Gastropod species richness was not affected by delayed effects of the wind throw, but it was significantly higher in invaded plots than in uninvaded plots. Similarly, gastropod abundance was higher in invaded plots than in the two types of control plots. Canonical correspondence analysis revealed marginally significant shifts of gastropod communities between the three types of plots and indicated that soil moisture, presence of I. glandulifera and cover of woody debris affected gastropod species composition. Field measurements showed that soil moisture was higher and daily soil temperature was more damped in patches of I. glandulifera than in the native ground vegetation. The changed microclimatic conditions may favour certain gastropod species. In particular, ubiquitous species and species with a high inundation tolerance increased in abundance in plots invaded by I. glandulifera. Our field experiment demonstrated that an invasive plant can indirectly affect native organisms by changing soil characteristics and microclimate.

The fate of seeds in the soil: a review of the influence of overland flow on seed removal and its consequences for the vegetation of arid and semiarid patchy ecosystems

NASA Astrophysics Data System (ADS)

Bochet, E.

2014-10-01

Since seeds are the principle means by which plants move across the landscapes, the final fate of seeds plays a fundamental role in the assemblage, functioning and dynamics of plant communities. Once seeds land on the soil surface after being dispersed from the parent plant, they can be moved horizontally by surface runoff. In arid and semiarid patchy ecosystems, where seeds are scattered into a very heterogeneous environment and intense rainfalls occur, the transport of seeds by runoff to new sites may be an opportunity for seeds to reach more favourable sites for seed germination and seedling survival. Although seed transport by runoff may be of vital importance for the recruitment of plants in these ecosystems, it has received little attention in the scientific literature, especially among soil scientists. The main goals are (1) to offer an updated conceptual model of seed fate with a special attention to seed destiny in and on the soil, (2) to review studies on seed fate in overland flow and the ecological implications seed transport by runoff has for the origin, spatial patterning and maintenance of patches and for plant community composition in arid and semiarid patchy ecosystems, and finally (3) to point out directions for future research. Our review shows that seed fate in overland flow may result either in the export of seeds from the system (seed loss) or in the spatial redistribution of seeds within the system through short-distance seed movements (seed displacement). Seed transport by runoff depends on rainfall, slope and soil characteristics. Seed susceptibility to be removed varies highly between species and is mainly related to seed traits, as seed size, seed shape, presence of appendages, and seed ability to secrete mucilage. Although initially considered as a risk of seed loss, seed removal by runoff has recently been described as an ecological driver that shapes plant composition from the first phases of the plant life, by favouring species with seeds able to resist erosion and by selecting for plant traits that prevent seed loss. Moreover, the interaction of seed transport by overland flow with the high seed trapping capacity of vegetated patches results in a "patch-to-patch" transport of seeds that plays a relevant role in vegetation establishment and patterning in arid and semiarid patchy ecosystems. Overall, this review shows how the knowledge about seed fate in overland flow can be used to explain a number of important characteristics of whole plant communities. It also underlines important gaps of knowledge that should be filled in. Future lines of research are proposed in order to broaden our understanding of the origin, maintenance and dynamics of patchiness in arid and semiarid ecosystems and to improve restoration success of intensively eroded ecosystems.

The groundwater subsidy to vegetation: groundwater exchanges between landcover patches

NASA Astrophysics Data System (ADS)

Steven, L. I.; Gimenez, R.; Jobbagy, E. G.

2015-12-01

The Gran Chaco is a hot, dry plain, that spans over 60 million hectares across Bolivia, Paraguay, Brazil and Argentina. It supports high biodiversity in its dry forest and savannahs, but is rapidly being converted to agriculture in response to growing soy demand and technology including genetic modification and zero-till, that has made cultivation in drier landscapes more viable. Under natural conditions, the deep-rooted, native vegetation of the Chaco effectively captured all rainfall for evapotranspiration resulting in near zero groundwater recharge under the dry forest. Conversion to shallower rooted soy and corn, combined with the fallow period prior to the growing season, reduces evapotranspiration and allows some water to percolate through the root zone and recharge the groundwater system. When this groundwater recharge occurs, it creates groundwater mounding and a hydraulic gradient that drives flow to adjacent landcover patches where recharge does not occur. As the watertable rises, groundwater becomes available to the deep-rooted, dry forest vegetation. We develop a soil and groundwater flow model to simulate infiltration, percolation, evaporation, rootwater uptake, groundwater recharge and the lateral transfer of water between adjacent landcover patches to quantify this groundwater subsidy from converted agricultural lands to remnant patches of dry forest.

The Topsoil Tour. The Hands-On Test Kit & Mini Curriculum for Exploring Soil.

ERIC Educational Resources Information Center

LaMotte Co., Chestertown, MD.

The goal of this mini-curriculum is for students to examine, discover, and compare the physical and chemical properties of soil. Seven units are designed to be presented as a lecture and to allow 30 to 40 students to perform every procedure, each testing their own soil sample. Games are provided in each section to reinforce the concepts presented…

Diadenosine tetraphosphate-gating of cardiac K(ATP) channels requires intact actin cytoskeleton.

PubMed

Jovanović, S; Jovanović, A

2001-09-01

Diadenosine polyphosphates (ApnA) have been recently discovered in the heart, and their levels found to be regulated by ischemia. These signaling molecules are believed to regulate cellular processes that alarm a cell to metabolic stress. In particular, changes in cardiac diadenosine polyphosphates (ApnA) levels may contribute to the regulation of ATP-sensitive K+ (K(ATP)) channel activity, an ion channel that couples the cellular metabolic state with membrane excitability. A feature of myocardial ischemia is the disruption of the actin cytoskeleton which critically regulates the behavior of K(ATP) channels. Whether the integrity of actin microfilaments regulates the interaction of ApnA with K(ATP) channels is not known. The inside-out configuration of the patch-clamp technique was applied to cardiomyocytes isolated from guinea-pig heart. Following patch excision, the prototype dinucleotide, diadenosine tetraphosphate (Ap4A), inhibited K(ATP) channel opening. Treatment of the internal side of membrane patches with either cytochalasin B or DNase I, disrupters of the actin cytoskeleton, prevented Ap4A-induced inhibition of K(ATP) channel opening. Application of purified actin to DNase-treated membrane patches restored the ability of Ap4A to close K(ATP) channels. This study shows that inhibition of cardiac K(ATP) channel by Ap4A, a putative alarmone, requires intact subsarcolemmal actin network. Such interaction between K(ATP) channels, the cardiomyocyte cytoskeleton and intracellular Ap4A could affect different channel-dependent functions.

New Regulators of Clathrin-Mediated Endocytosis Identified in Saccharomyces cerevisiae by Systematic Quantitative Fluorescence Microscopy

PubMed Central

Farrell, Kristen B.; Grossman, Caitlin; Di Pietro, Santiago M.

2015-01-01

Despite the importance of clathrin-mediated endocytosis (CME) for cell biology, it is unclear if all components of the machinery have been discovered and many regulatory aspects remain poorly understood. Here, using Saccharomyces cerevisiae and a fluorescence microscopy screening approach we identify previously unknown regulatory factors of the endocytic machinery. We further studied the top scoring protein identified in the screen, Ubx3, a member of the conserved ubiquitin regulatory X (UBX) protein family. In vivo and in vitro approaches demonstrate that Ubx3 is a new coat component. Ubx3-GFP has typical endocytic coat protein dynamics with a patch lifetime of 45 ± 3 sec. Ubx3 contains a W-box that mediates physical interaction with clathrin and Ubx3-GFP patch lifetime depends on clathrin. Deletion of the UBX3 gene caused defects in the uptake of Lucifer Yellow and the methionine transporter Mup1 demonstrating that Ubx3 is needed for efficient endocytosis. Further, the UBX domain is required both for localization and function of Ubx3 at endocytic sites. Mechanistically, Ubx3 regulates dynamics and patch lifetime of the early arriving protein Ede1 but not later arriving coat proteins or actin assembly. Conversely, Ede1 regulates the patch lifetime of Ubx3. Ubx3 likely regulates CME via the AAA-ATPase Cdc48, a ubiquitin-editing complex. Our results uncovered new components of the CME machinery that regulate this fundamental process. PMID:26362318

A laboratory study of channel sidewall expansion in upland concentrated flows

USDA-ARS?s Scientific Manuscript database

Gully erosion contributes large amounts of sediment within watersheds and gullies incise landscape into fractured patches on the Loess Plateau of China. As one of the main processes of channel development, gully widening occupies as much as 80% of total soil loss, especially in the presence of a les...

Stunted patches in onion bulb crops in Oregon and Washington: Etiology and yield loss

USDA-ARS?s Scientific Manuscript database

Onion stunting caused by Rhizoctonia spp. is an important soilborne disease in the Columbia Basin of Oregon and Washington. From 2010 to 2013, 251 isolates of Rhizoctonia or Rhizoctonia-like spp. were obtained from soil and onion plant samples collected from Oregon and Washington. Sequence analysis ...

Periodicity in spatial data and geostatistical models: autocorrelation between patches

Treesearch

Volker C. Radeloff; Todd F. Miller; Hong S. He; David J. Mladenoff

2000-01-01

Several recent studies in landscape ecology have found periodicity in correlograms or semi-variograms calculated, for instance, from spatial data of soils, forests, or animal populations. Some of the studies interpreted this as an indication of regular or periodic landscape patterns. This interpretation is in disagreement with other studies that doubt whether such...

Stand-replacing wildfires increase nitrification for decades in southwestern ponderosa pine forests.

PubMed

Kurth, Valerie J; Hart, Stephen C; Ross, Christopher S; Kaye, Jason P; Fulé, Peter Z

2014-05-01

Stand-replacing wildfires are a novel disturbance within ponderosa pine (Pinus ponderosa) forests of the southwestern United States, and they can convert forests to grasslands or shrublands for decades. While most research shows that soil inorganic N pools and fluxes return to pre-fire levels within a few years, we wondered if vegetation conversion (ponderosa pine to bunchgrass) following stand-replacing fires might be accompanied by a long-term shift in N cycling processes. Using a 34-year stand-replacing wildfire chronosequence with paired, adjacent unburned patches, we examined the long-term dynamics of net and gross nitrogen (N) transformations. We hypothesized that N availability in burned patches would become more similar to those in unburned patches over time after fire as these areas become re-vegetated. Burned patches had higher net and gross nitrification rates than unburned patches (P < 0.01 for both), and nitrification accounted for a greater proportion of N mineralization in burned patches for both net (P < 0.01) and gross (P < 0.04) N transformation measurements. However, trends with time-after-fire were not observed for any other variables. Our findings contrast with previous work, which suggested that high nitrification rates are a short-term response to disturbance. Furthermore, high nitrification rates at our site were not simply correlated with the presence of herbaceous vegetation. Instead, we suggest that stand-replacing wildfire triggers a shift in N cycling that is maintained for at least three decades by various factors, including a shift from a woody to an herbaceous ecosystem and the presence of fire-deposited charcoal.

Effects of soil water repellency on microbial community structure and functions in Mediterranean pine forests

NASA Astrophysics Data System (ADS)

Lozano, Elena; Grayston, Sue J.; Mataix-Solera, Jorge; Arcenegui, Victoria; Jimenez-Pinilla, Patricia; Mataix-Beneyto, Jorge

2015-04-01

Soil water repellency (SWR) is a property commonly observed in forest areas showing wettable and water repellent patches with high spatial variability. SWR can greatly influence the hydrology and the ecology of forest soils. The capacity of soil microorganisms to degrade different organic compounds depends upon species composition, so this may affect changes in SWR on the microsite scale (such as the presence of soil water repellent patches; Mülleret al., 2010). In the Mediterranean forest context, SWR has been found to be related to microbial community composition. The accumulation of different hydrophobic compounds might be causing the shifts in microbial community structure (Lozano et al., 2014). In this study we investigated the effects of SWR persistence on soil microbial community structure and enzyme activity under Pinus halepensis forest in three different sites: Petrer, Gorga and Jávea (Alicante, E Spain). Soil samples were classified into three different water repellency classes (wettable, slight or strongly water repellent samples) depending on the SWR persistence. The soil microbial community was determined through phospholipid fatty acids (PLFAs). Enzyme activities chosen for this study were cellulase, β-glucosidase and N-acetyl-β-glucosaminide (NAG). The relationships between microbiological community structure and some soil properties such as pH, Glomalin Related Soil Protein, soil organic matter content and soil respiration were also studied. Redundancy analyses and decomposition of the variances were performed to clarify how microbial community composition and enzyme activities are affected by SWR and soil properties. The effect of SWR on microbial community composition differed between locations. This effect was clearer in the Petrer site. Enzyme activity varied considerably depending on SWR persistence. The highest activities were found in slightly SWR samples and the lowest mostly in the strongly water repellent ones. These preliminary results suggest a possible influence of SWR on microbial structure and its activity in soils. References: Lozano, E., García-Orenes, F., Bárcenas-Moreno, G., Jiménez-Pinilla, P., Mataix-Solera, J., Arcenegui, V., Morugán-Coronado, A., Mataix-Beneyto, J., 2014. Relationships between soil water repellency and microbial community composition under different plant species in a Mediterranean semiarid forest. J. Hydrol. Hydromech., 62, 101-107 Müller, K., Deurer, M., Newton, P.C.D., 2010. Is there a link between elevated atmospheric carbon dioxide concentration, soil water repellency and soil carbon mineralization? Agric. Ecosyst. Environ., 139, 98-109. Acknowledgements: to the "Ministerio de Economía and Competitividad" of Spanish Government for finance the POSTFIRE project (CGL2013- 47862-C2-1-R), Generalitat Valenciana for PhD grant, and Spanish Soil Science Society and FUEGORED for their support.

Partitioning understory evapotranspiration in semi-arid ecosystems in Namibia using the isotopic composition of water vapour

NASA Astrophysics Data System (ADS)

de Blécourt, Marleen; Gaj, Marcel; Holtorf, Kim-Kirsten; Gröngröft, Alexander; Brokate, Ralph; Himmelsbach, Thomas; Eschenbach, Annette

2016-04-01

In dry environments with a sparse vegetation cover, understory evapotranspiration is a major component of the ecosystem water balance. Consequently, knowledge on the size of evapotranspiration fluxes and the driving factors is important for our understanding of the hydrological cycle. Understory evapotranspiration is made up of soil evaporation and plant transpiration. Soil evaporation can be measured directly from patches free of vegetation. However, when understory vegetation is present distinguishing between soil evaporation and plant transpiration is challenging. In this study, we aim to partition understory evapotranspiration based on an approach that combines the measurements of water-vapour fluxes using the closed chamber method with measurements of the isotopic composition of water vapour. The measurements were done in the framework of SASSCAL (Southern African Science Service Centre for Climate Change and Adaptive Land Management). The study sites were located in three different semi-arid ecosystems in Namibia: thornbush savanna, Baikiaea woodland and shrubland. At each site measurements were done under tree canopies as well as at unshaded areas between the canopies. We measured evaporation from the bare soil and evapotranspiration from patches covered with herbaceous species and shrubs using a transparent chamber connected with an infrared gas analyser (LI-8100A, LICOR Inc.). The stable isotope composition of water vapour inside the chamber and depth profiles of soil water stable isotopes were determined in-situ using a tuneable off-axis integrated cavity output spectroscope (OA-ICOS, Los Gatos Research, DLT 100). Xylem samples were extracted using the cryogenic vacuum extraction method and the isotopic composition of the extracted water was measured subsequently with a cavity-ring-down spectrometer (CRDS L2120-i, Picarro Inc.). We will present the quantified fluxes of understory evapotranspiration measured in the three different ecosystems, show the effect of tree shading on these fluxes, and discuss the applicability of isotopic data to partition understory evapotranspiration in soil evaporation and plant transpiration.

Negative plant soil feedback explaining ring formation in clonal plants.

PubMed

Cartenì, Fabrizio; Marasco, Addolorata; Bonanomi, Giuliano; Mazzoleni, Stefano; Rietkerk, Max; Giannino, Francesco

2012-11-21

Ring shaped patches of clonal plants have been reported in different environments, but the mechanisms underlying such pattern formation are still poorly explained. Water depletion in the inner tussocks zone has been proposed as a possible cause, although ring patterns have been also observed in ecosystems without limiting water conditions. In this work, a spatially explicit model is presented in order to investigate the role of negative plant-soil feedback as an additional explanation for ring formation. The model describes the dynamics of the plant biomass in the presence of toxicity produced by the decomposition of accumulated litter in the soil. Our model qualitatively reproduces the emergence of ring patterns of a single clonal plant species during colonisation of a bare substrate. The model admits two homogeneous stationary solutions representing bare soil and uniform vegetation cover which depend only on the ratio between the biomass death and growth rates. Moreover, differently from other plant spatial patterns models, but in agreement with real field observations of vegetation dynamics, we demonstrated that the pattern dynamics always lead to spatially homogeneous vegetation covers without creation of stable Turing patterns. Analytical results show that ring formation is a function of two main components, the plant specific susceptibility to toxic compounds released in the soil by the accumulated litter and the decay rate of these same compounds, depending on environmental conditions. These components act at the same time and their respective intensities can give rise to the different ring structures observed in nature, ranging from slight reductions of biomass in patch centres, to the appearance of marked rings with bare inner zones, as well as the occurrence of ephemeral waves of plant cover. Our results highlight the potential role of plant-soil negative feedback depending on decomposition processes for the development of transient vegetation patterns. Copyright © 2012 Elsevier Ltd. All rights reserved.

Afforestation alters community structure of soil fungi.

PubMed

Carson, Jennifer K; Gleeson, Deirdre B; Clipson, Nicholas; Murphy, Daniel V

2010-07-01

Relatively little is known about the effect of afforestation on soil fungal communities. This study demonstrated that afforestation altered fungal community structure and that changes were correlated to pools of soil C. Pasture at three locations on the same soil type was afforested with Eucalyptus globulus or Pinus pinaster. The structure of fungal communities under the three land uses was measured after 13y using automated ribosomal intergenic spacer analysis (ARISA). Afforestation significantly altered the structure of fungal communities. The effect of location on the structure of fungal communities was limited to pasture soils; although these contained the same plant species, the relative composition of each species varied between locations. Differences in the structure of fungal communities between pasture, E. globulus and P. pinaster were significantly correlated with changes in the amount of total organic C and microbial biomass-C in soil. Afforestation of patches of agricultural land may contribute to conserving soil fungi in agricultural landscapes by supporting fungal communities with different composition to agricultural soils. Copyright © 2010 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

Unique Microbial Phylotypes in Namib Desert Dune and Gravel Plain Fairy Circle Soils.

PubMed

van der Walt, Andries J; Johnson, Riegardt M; Cowan, Don A; Seely, Mary; Ramond, Jean-Baptiste

2016-08-01

Fairy circles (FCs) are barren circular patches of soil surrounded by grass species. Their origin is poorly understood. FCs feature in both the gravel plains and the dune fields of the Namib Desert. While a substantial number of hypotheses to explain the origin and/or maintenance of fairy circles have been presented, none are completely consistent with either their properties or their distribution. In this study, we investigated the hypothesis that FC formation in dunes and gravel plains is due to microbial phytopathogenesis. Surface soils from five gravel plain and five dune FCs, together with control soil samples, were analyzed using high-throughput sequencing of bacterial/archaeal (16S rRNA gene) and fungal (internal transcribed spacer [ITS] region) phylogenetic markers. Our analyses showed that gravel plain and dune FC microbial communities are phylogenetically distinct and that FC communities differ from those of adjacent vegetated soils. Furthermore, various soil physicochemical properties, particularly the pH, the Ca, P, Na, and SO4 contents, the soil particle size, and the percentage of carbon, significantly influenced the compositions of dune and gravel plain FC microbial communities, but none were found to segregate FC and vegetated soil communities. Nevertheless, 9 bacterial, 1 archaeal, and 57 fungal phylotypes were identified as FC specific, since they were present within the gravel plain and dune FC soils only, not in the vegetated soils. Some of these FC-specific phylotypes were assigned to taxa known to harbor phytopathogenic microorganisms. This suggests that these FC-specific microbial taxa may be involved in the formation and/or maintenance of Namib Desert FCs. Fairy circles (FCs) are mysterious barren circular patches of soil found within a grass matrix in the dune fields and gravel plains of the Namib Desert. Various hypotheses attempting to explain this phenomenon have been proposed. To date, however, none have been successful in fully explaining the etiology of FCs, particularly since gravel plain FCs have been largely ignored. In this study, we investigated the hypothesis that microorganisms could be involved in the FC phenomenon through phytopathogenesis. We show that the microbial communities in FC and control vegetated soil samples were significantly different. Furthermore, we detected 67 FC-specific microbial phylotypes, i.e., phylotypes present solely in both gravel plain and dune FC soils, some of which were closely related to known phytopathogens. Our results, therefore, demonstrate that microorganisms may play a role in the formation and/or maintenance of Namib Desert FCs, possibly via phytopathogenic activities. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

[Yeast diversity in Bulnesia retama and Larrea divaricata canopies and associated soils].

PubMed

Toro, M E; Oro, N P; Vega, A D; Maturano, Y P; Nally, M C; Fernandez, E; Pucheta, E; Vázquez, F

2005-01-01

Bush like vegetation dominates arid environments, and there is nutrients accumulation under shrub canopies and relatively unfertile soils between vegetal patches areas. Plants are one of the most common habitats for yeasts. There are many reports about yeasts inhabiting different plant components. Nevertheless, there are no reports about yeasts associated with Zygophyllaceae, an important shrub family of the Argentinean Province of Monte. The objective of this work was to analyzed yeast biodiversity of Bulnesia retama and Larrea divaricata canopies and associated soils, at Medanos Grandes of Caucete, San Juan, Argentina. Eighty seven (87) isolated yeasts were identified. From B. retama canopy and associated soil was observed a larger taxonomical diversity respect to L. divaricata. Nine (9) and ten (10) species were isolated from canopy and associated soil of B. retama, respectively. From L. divaricata canopy were 4 species and 3 species from its associated soil isolated. Identified genera were: Candida, Debaryomyces, Dekkera, Saccharomyces, Torulaspora, Sporidiobolus and Pichia. Fourteen (14) species were found at all microenvironments.

Arbuscular mycorrhizal fungi reduce nitrous oxide emissions from N2 O hotspots.

PubMed

Storer, Kate; Coggan, Aisha; Ineson, Phil; Hodge, Angela

2017-12-05

Nitrous oxide (N 2 O) is a potent, globally important, greenhouse gas, predominantly released from agricultural soils during nitrogen (N) cycling. Arbuscular mycorrhizal fungi (AMF) form a mutualistic symbiosis with two-thirds of land plants, providing phosphorus and/or N in exchange for carbon. As AMF acquire N, it was hypothesized that AMF hyphae may reduce N 2 O production. AMF hyphae were either allowed (AMF) or prevented (nonAMF) access to a compartment containing an organic matter and soil patch in two independent microcosm experiments. Compartment and patch N 2 O production was measured both before and after addition of ammonium and nitrate. In both experiments, N 2 O production decreased when AMF hyphae were present before inorganic N addition. In the presence of AMF hyphae, N 2 O production remained low following ammonium application, but increased in the nonAMF controls. By contrast, negligible N 2 O was produced following nitrate application to either AMF treatment. Thus, the main N 2 O source in this system appeared to be via nitrification, and the production of N 2 O was reduced in the presence of AMF hyphae. It is hypothesized that AMF hyphae may be outcompeting slow-growing nitrifiers for ammonium. This has significant global implications for our understanding of soil N cycling pathways and N 2 O production. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Utilizing patch and site level greenhouse-gas concentration measurements in tandem with the prognostic model, ecosys

NASA Astrophysics Data System (ADS)

Morin, T. H.; Rey Sanchez, C.; Bohrer, G.; Riley, W. J.; Angle, J.; Mekonnen, Z. A.; Stefanik, K. C.; Wrighton, K. C.

2016-12-01

Estimates of wetland greenhouse gas (GHG) budgets currently have large uncertainties. While wetlands are the largest source of natural methane (CH4) emissions worldwide, they are also important carbon dioxide (CO2) sinks. Determining the GHG budget of a wetland is challenging, particularly because wetlands have intrinsically temporally and spatially heterogeneous land cover patterns and complex dynamics of CH4 production and emissions. These issues pose challenges to both measuring and modeling GHG budgets from wetlands. To improve wetland GHG flux predictability, we utilized the ecosys model to predict CH4 fluxes from a natural temperate estuarine wetland in northern Ohio. Multiple patches of terrain (that included Typha spp. and Nelumbo lutea) were represented as separate grid cells in the model. Cells were initialized with measured values but were allowed to dynamically evolve in response to meteorological, hydrological, and thermodynamic conditions. Trace gas surface emissions were predicted as the end result of microbial activity, physical transport, and plant processes. Corresponding to each model gridcell, measurements of dissolved gas concentrations were conducted with pore-water dialysis samplers (peepers). The peeper measurements were taken via a series of tubes, providing an undisturbed observation of the pore water concentrations of in situ dissolved gases along a vertical gradient. Non-steady state chambers and a flux tower provided both patch level and integrated site-level fluxes of CO2 and CH4. New Typha chambers were also developed to enclose entire plants and segregate the plant fluxes from soil/water fluxes. We expect ecosys to predict the seasonal and diurnal fluxes of CH4 from within each land cover type and to resolve where CH4 is generated within the soil column and its transmission mechanisms. We demonstrate the need for detailed information at both the patch and site level when using models to predict whole wetland ecosystem-scale GHG budgets.

[Soil N/P ratio distribution characteristics of alpine grassland ecosystem in Qinghai-Tibet Plateau].

PubMed

Wang, Jian-Lin; Zhong, Zhi-Ming; Wang, Zhong-Hong; Chen, Bao-Xiong; Zhang, Xian-Zhou; Shen, Zhen-Xi; Hu, Xing-Xiang; Dacizhuoga

2013-12-01

The distribution characteristics of soil N/P ratio in alpine grassland ecosystem of Qinghai-Tibet Plateau were surveyed by field investigation and laboratory analysis. Horizontally, soil N/ P ratio was generally higher in west and lower in east in a manner of staggered patch distribution, with higher N/P ratios mainly centralized in the hinterland of northern part of Tibet Plateau and in the lake basin area of the northern foot of Himalayas. Significant differences in soil N/P ratio were observed among grassland types and natural transects. Vertically, the distribution of N/P ratio along the soil profile from aboveground to underground among different grass types could be categorized into five patterns, including low-high-low-high, low-high-low, low-high, high-low-high-low, and high-low-high. The N/P ratio showed a significant positive correlation with soil bulk density at 0-20 cm depth, soil water content at 20-30 cm depth, contents of soil available K and total nitrogen, respectively. However, it showed significant negative correlation with soil bulk density at 20-30 cm depth, contents of soil available P and total P, respectively.

Soil nitrogen patterns induced by colonization of Polygonum cuspidatum on Mt. Fuji.

PubMed

Hirose, T; Tateno, M

1984-02-01

The spatial pattern of soil nitrogen was analyzed for a patchy vegetation formed by the colonization of Polygonum cuspidatum in a volcanic "desert" on Mt. Fuji. Soils were sampled radially from the bare ground to the center of the patch, and analyses were done for bulk density, water content, soil acidity, organic matter, organic nitrogen, and ammonium and nitrate nitrogen. The soils matured with succession from the bare ground through P. cuspidatum to Miscanthus oligostachyus and Aster ageratoides sites: bulk density decreased, and water content, organic matter, organic nitrogen, and ammonium nitrogen increased. Nitrate nitrogen showed the highest values at the P. cuspidatum site. Application of principal component analysis to the soil data discriminated two component factors which control the variation of soil characteristics: the first factor is related to soil formation and the second factor to nitrogen mineralization and nitrification. The effect of soil formation on nitrogen mineralization and nitrification was analyzed with a first-order kinetic model. The decreasing trends with soil formation in the ratios of mineral to organic nitrogen and of nitrate to ammonium nitrogen could be accounted for by the higher activity of immobilization by microorganisms and uptake by plants in the more mature ecosystem.

Wiggling Its Way to Discovery

NASA Technical Reports Server (NTRS)

2004-01-01

This image shows the Mars Exploration Rover Spirit's view from its new location inside the shallow depression dubbed 'Laguna Hollow.' To get a better look at the soil making up the hollow, Spirit drove forward a bit, wiggled its wheels, then turned and backed up. The result - a scrape on the floor and a clod of dirt stuck on one of Spirit's wheels - told scientists that the soil is sticky and reminiscent of that observed at the airbag drag mark nicknamed 'Magic Carpet.' Spirit will further investigate this disturbed patch of soil with its robotic arm beginning today (Feb. 19, 2004). It will also dig a trench at 'Laguna Hollow' with one of its wheels. This fish-eye image was taken by the rover's hazard-avoidance camera.

The Association of a Longidorus Species with Stunting and Root Damage of Loblolly Pine (Pinus taeda L.) Seedlings

Treesearch

Stephen W. Fraedrich; Michelle M. Cram

2002-01-01

A Longidorus species was consistently associated with patches of stunted and chlorotic loblolly pine seedlings at a forest-tree nursery in Georgia. Seedlings from affected areas had poorly developed root systems that lacked lateral and feeder roots. Longidorus population densities in composite soil samples from the margins of...

Utilizing the trophic interactions of nematodes as indicators of changes in soil biota associated with loss of Bouteloua eriopoda grasslands

USDA-ARS?s Scientific Manuscript database

A theoretical framework of desertification has been developed within the Jornada Basin LTER that involves the rate of change and magnitude of wind and water erosion affected by spatial variation in the distribution of gap size changes from high connectivity of vegetated patches in grasslands to low ...

Selenium hyperaccumulation - Astragalus bisulcatus, Cardamine hupingshanensis and Stanleya pinnata - may be useful for agromining selenium-rich soils

USDA-ARS?s Scientific Manuscript database

Selenium hyperaccumulator plants like Stanleya pinnata, Astragalus bisulcatus and the newly discovered Se-accumulator Cardamine hupingshanensis may play an important role in the Se cycle from soil to plant to human in China. Se-hyperaccumulators can be used for agromining or for phytoremediation of ...

Bedrock Outcrops in Kaiser Crater

NASA Image and Video Library

2017-03-13

This enhanced-color image from NASA Mars Reconnaissance Orbiter shows a patch of well-exposed bedrock on the floor of Kaiser Crater. The wind has stripped off the overlying soil, and created grooves and scallops in the bedrock. The narrow linear ridges are fractures that have been indurated, probably by precipitation of cementing minerals from groundwater flow. The rippled dark blue patches consist of sand. The map is projected here at a scale of 25 centimeters (9.8 inches) per pixel. [The original image scale is 25.3 centimeters (9.9 inches) per pixel (with 1 x 1 binning); objects on the order of 76 centimeters (29.9 inches) across are resolved.] North is up. http://photojournal.jpl.nasa.gov/catalog/PIA21559

Linking community and ecosystem development on Mount St. Helens.

PubMed

Gill, Richard A; Boie, Jennifer A; Bishop, John G; Larsen, Lindsay; Apple, Jennifer L; Evans, R David

2006-06-01

In the two decades following the 1980 eruption of Mount St. Helens in Washington State, the N2-fixing colonizer Lupinus lepidus is associated with striking heterogeneity in plant community and soil development. We report on differences in nutrient availability and plant tissue chemistry between older, dense patches (core) of L. lepidus and more recently established low density patches (edge). In addition, we conducted a factorial nitrogen and phosphorus fertilization experiment in core patches to examine the degree of N and P limitation in early primary succession. We found that there were no significant differences in N or P availability between core and edge L. lepidus patches during the dry summer months, although nutrient availability is very low across the landscape. In the high density patches we found lower tissue N content and higher fiber content in L. lepidus tissue than in the younger edge patches. The addition of nutrients substantially altered plant community composition, with N addition causing an increase in other forb biomass and a corresponding competition-induced decline in L. lepidus biomass. The majority of the positive biomass response came from Hypochaeris radicata. In the second year of the fertilization experiment, the addition of N significantly increased total community biomass while L. lepidus biomass declined by more than 50%. The response of every species other than L. lepidus to N additions suggests that N may be the macronutrient most limiting plant production on Mount St. Helens but that the gains in productivity were somewhat offset by a decline of the dominant species. By the third year of the experiment, L. lepidus began to increase in abundance with P addition. This result suggests co-limitation of the community by N and P.

Salecan Enhances the Activities of β-1,3-Glucanase and Decreases the Biomass of Soil-Borne Fungi

PubMed Central

Chen, Yunmei; Xu, Haiyang; Zhou, Mengyi; Wang, Yang; Wang, Shiming; Zhang, Jianfa

2015-01-01

Salecan, a linear extracellular polysaccharide consisting of β-1,3-D-glucan, has potential applications in the food, pharmaceutical and cosmetic industries. The objective of this study was to evaluate the effects of salecan on soil microbial communities in a vegetable patch. Compositional shifts in the genetic structure of indigenous soil bacterial and fungal communities were monitored using culture-dependent dilution plating, culture-independent PCR-denaturing gradient gel electrophoresis (DGGE) and quantitative PCR. After 60 days, soil microorganism counts showed no significant variation in bacterial density and a marked decrease in the numbers of fungi. The DGGE profiles revealed that salecan changed the composition of the microbial community in soil by increasing the amount of Bacillus strains and decreasing the amount of Fusarium strains. Quantitative PCR confirmed that the populations of the soil-borne fungi Fusarium oxysporum and Trichoderma spp. were decreased approximately 6- and 2-fold, respectively, in soil containing salecan. This decrease in the amount of fungi can be explained by salecan inducing an increase in the activities of β-1,3-glucanase in the soil. These results suggest the promising application of salecan for biological control of pathogens of soil-borne fungi. PMID:26247592

Evaporation and transpiration from forests in Central Europe - relevance of patch-level studies for spatial scaling

NASA Astrophysics Data System (ADS)

Köstner, B.

Spatial scaling from patch to the landscape level requires knowledge on the effects of vegetation structure on maximum surface conductances and evaporation rates. The following paper summarizes results on atmospheric, edaphic, and structural controls on forest evaporation and transpiration observed in stands of Norway spruce (Picea abies), Scots pine (Pinus sylvestris) and European beech (Fagus sylvatica). Forest canopy transpiration (Ec) was determined by tree sapflow measurements scaled to the stand level. Estimates of understory transpiration and forest floor evaporation were derived from lysimeter and chamber measurements. Strong reduction of Ec due to soil drought was only observed at a Scots pine stand when soil water content dropped below 16% v/v. Although relative responses of Ec on atmospheric conditions were similar, daily maximum rates of could differ more than 100% between forest patches of different structure (1.5-3.0mmd-1 and 2.6-6.4mmd-1 for spruce and beech, respectively). A significant decrease of Ecmax per leaf area index with increasing stand age was found for monocultures of Norway spruce, whereas no pronounced changes in were observed for beech stands. It is concluded that structural effects on Ecmax can be specified and must be considered for spatial scaling from forest stands to landscapes. Hereby, in conjunction with LAI, age-related structural parameters are important for Norway spruce stands. Although compensating effects of tree canopy layers and understory on total evaporation of forests were observed, more information is needed to quantify structure-function relationships in forests of heterogenous structure.

Adsorption of transgenic insecticidal Cry1Ab protein to SiO2. 2. Patch-controlled electrostatic attraction.

PubMed

Madliger, Michael; Sander, Michael; Schwarzenbach, René P

2010-12-01

Adsorption governs the fate of Cry proteins from genetically modified Bt crops in soils. The effect of ionic strength (I) on the adsorption of Cry1Ab (isoelectric point IEP(Cry1Ab) ≈ 6) to negatively charged quartz (SiO(2)) and positively charged poly-L-lysine (PLL) was investigated at pH 5 to 8, using quartz crystal microbalance with dissipation monitoring and optical waveguide lightmode spectroscopy. Cry1Ab adsorbed via positively and negatively charged surface patches to SiO(2) and PLL, respectively. This patch controlled electrostatic attraction (PCEA) explains the observed increase in Cry1Ab adsorption to sorbents that carried the same net charge as the protein (SiO(2) at pH > IEP(Cry1Ab) and PLL at pH < IEP(Cry1Ab)) with decreasing I. In contrast, the adsorption of two reference proteins, BSA and HEWL, with different adsorption mechanism, were little affected by similar changes of I. Consistent with PCEA, Cry1Ab desorption from SiO(2) at pH > IEP(Cry1Ab) increased with increasing I and pH. Weak Cry1Ab-SiO(2) PCEA above pH 7 resulted in reversible, concentration dependent adsorption. Solution depletion experiments showed that PCEA also governed Cry1Ab adsorption to SiO(2) particles at environmentally relevant concentrations (a few ng mL(-1)). These results imply that models describing Cry1Ab adsorption to charged surfaces in soils need to account for the nonuniform surface charge distribution of the protein.

Modifying the 'pulse-reserve' paradigm for deserts of North America: precipitation pulses, soil water, and plant responses.

PubMed

Reynolds, James F; Kemp, Paul R; Ogle, Kiona; Fernández, Roberto J

2004-10-01

The 'pulse-reserve' conceptual model--arguably one of the most-cited paradigms in aridland ecology--depicts a simple, direct relationship between rainfall, which triggers pulses of plant growth, and reserves of carbon and energy. While the heuristics of 'pulses', 'triggers' and 'reserves' are intuitive and thus appealing, the value of the paradigm is limited, both as a conceptual model of how pulsed water inputs are translated into primary production and as a framework for developing quantitative models. To overcome these limitations, we propose a revision of the pulse-reserve model that emphasizes the following: (1) what explicitly constitutes a biologically significant 'rainfall pulse', (2) how do rainfall pulses translate into usable 'soil moisture pulses', and (3) how are soil moisture pulses differentially utilized by various plant functional types (FTs) in terms of growth? We explore these questions using the patch arid lands simulation (PALS) model for sites in the Mojave, Sonoran, and Chihuahuan deserts of North America. Our analyses indicate that rainfall variability is best understood in terms of sequences of rainfall events that produce biologically-significant 'pulses' of soil moisture recharge, as opposed to individual rain events. In the desert regions investigated, biologically significant pulses of soil moisture occur in either winter (October-March) or summer (July-September), as determined by the period of activity of the plant FTs. Nevertheless, it is difficult to make generalizations regarding specific growth responses to moisture pulses, because of the strong effects of and interactions between precipitation, antecedent soil moisture, and plant FT responses, all of which vary among deserts and seasons. Our results further suggest that, in most soil types and in most seasons, there is little separation of soil water with depth. Thus, coexistence of plant FTs in a single patch as examined in this PALS study is likely to be fostered by factors that promote: (1) separation of water use over time (seasonal differences in growth), (2) relative differences in the utilization of water in the upper soil layers, or (3) separation in the responses of plant FTs as a function of preceding conditions, i.e., the physiological and morphological readiness of the plant for water-uptake and growth. Finally, the high seasonal and annual variability in soil water recharge and plant growth, which result from the complex interactions that occur as a result of rainfall variability, antecedent soil moisture conditions, nutrient availability, and plant FT composition and cover, call into question the use of simplified vegetation models in forecasting potential impacts of climate change in the arid zones in North America.

Landscape Evolution in South Texas Savannas: Impact of Woody Encroachment on Land-Surface Hydrology

NASA Astrophysics Data System (ADS)

Basant, S.; Wilcox, B. P.

2017-12-01

South Texas shrubland savannas have seen extensive woody encroachment over the last century. The ecosystem is largely spread over the coastal sediments typified by subtle elevation differences which are marked by bands of thick vegetation. Together, they form a dendritic pattern of vegetation which resembles a drainage network. We hypothesize that these vegetation shifts from grassland to woodlands began with the woody encroachment of drainage networks first. This was helped mainly by two factors, a) cattle grazing, b) the undulating feature of the landscape, c) periodic high intensity storms every few years resulting in large overland flows. We propose that the overland flows generated by these periodic storms provided a `subsidy' of extra water accounting for the differential rate of biomass production in lowlands. We also propose that with the continued woody encroachment, the extent of redistribution of water has changed in extent, and in scale triggering vegetation dynamics which are more controlled at patch scales. Soil moisture data was collected for over a year using neutron moisture meter for 40 points spread over a micro catchment. Plot scale runoff and interception data was sampled for the same catchment. USGS historical streamflow data from nearby creeks was used to confirm the periodic trend of runoff generation. Control exerted by microtopography of the site was accounted by using DEM at 1m resolution. Soil water storage was found to be consistently higher for uplands with open areas while lower for wooded patches but the upland sites also exhibited variability based on the slope and soil texture. Runoff generated also varied on shrub cover, slope and soil order, but higher for areas with previous records of grazing. Most runoff events were < 2mm except for 2 hurricane events in our records which generated more than 100mm of runoff. This points to the importance the role of rainfall intensity and the scale of runoff redistribution in providing 'subsidies' which together mediates heterogeneity in biomass cover. We believe that these processes are continuously shifting since the woody encroachment began on this landscape. This highlights the need for a better understanding and acknowledgement of patch scale variabiliy in water, biomass productivity and processes which mediate such variability.

Reconciling spatial and temporal soil moisture effects on afternoon rainfall

PubMed Central

Guillod, Benoit P.; Orlowsky, Boris; Miralles, Diego G.; Teuling, Adriaan J.; Seneviratne, Sonia I.

2015-01-01

Soil moisture impacts on precipitation have been strongly debated. Recent observational evidence of afternoon rain falling preferentially over land parcels that are drier than the surrounding areas (negative spatial effect), contrasts with previous reports of a predominant positive temporal effect. However, whether spatial effects relating to soil moisture heterogeneity translate into similar temporal effects remains unknown. Here we show that afternoon precipitation events tend to occur during wet and heterogeneous soil moisture conditions, while being located over comparatively drier patches. Using remote-sensing data and a common analysis framework, spatial and temporal correlations with opposite signs are shown to coexist within the same region and data set. Positive temporal coupling might enhance precipitation persistence, while negative spatial coupling tends to regionally homogenize land surface conditions. Although the apparent positive temporal coupling does not necessarily imply a causal relationship, these results reconcile the notions of moisture recycling with local, spatially negative feedbacks. PMID:25740589

Validation of a BOTDR-based system for the detection of smuggling tunnels

NASA Astrophysics Data System (ADS)

Elkayam, Itai; Klar, Assaf; Linker, Raphael; Marshall, Alec M.

2010-04-01

Cross-border smuggling tunnels enable unmonitored movement of people, drugs and weapons and pose a very serious threat to homeland security. Recently, Klar and Linker (2009) [SPIE paper No. 731603] presented an analytical study of the feasibility of a Brillouin Optical Time Domain Reflectometry (BOTDR) based system for the detection of small sized smuggling tunnels. The current study extends this work by validating the analytical models against real strain measurements in soil obtained from small scale experiments in a geotechnical centrifuge. The soil strains were obtained using an image analysis method that tracked the displacement of discrete patches of soil through a sequence of digital images of the soil around the tunnel during the centrifuge test. The results of the present study are in agreement with those of a previous study which was based on synthetic signals generated using empirical and analytical models from the literature.

Back to the future of soil metagenomics

DOE PAGES

Nesme, Joseph; Achouak, Wafa; Agathos, Spiros N.; ...

2016-02-10

Here, direct extraction and characterization of microbial community DNA through PCR amplicon surveys and metagenomics has revolutionized the study of environmental microbiology and microbial ecology. In particular, metagenomic analysis of nucleic acids provides direct access to the genomes of the “uncultivated majority.” Accelerated by advances in sequencing technology, microbiologists have discovered more novel phyla, classes, genera, and genes from microorganisms in the first decade and a half of the twenty-first century than since these “many very little living animalcules” were first discovered by van Leeuwenhoek (Table 1). The unsurpassed diversity of soils promises continued exploration of a range of industrial,more » agricultural, and environmental functions. The ability to explore soil microbial communities with increasing capacity offers the highest promise for answering many outstanding who, what, where, when, why, and with whom questions such as: Which microorganisms are linked to which soil habitats? How do microbial abundances change with changing edaphic conditions? How do microbial assemblages interact and influence one another synergistically or antagonistically? What is the full extent of soil microbial diversity, both functionally and phylogenetically? What are the dynamics of microbial communities in space and time? How sensitive are microbial communities to a changing climate? What is the role of horizontal gene transfer in the stability of microbial communities? Do highly diverse microbial communities confer resistance and resilience in soils?« less

Back to the future of soil metagenomics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nesme, Joseph; Achouak, Wafa; Agathos, Spiros N.

Here, direct extraction and characterization of microbial community DNA through PCR amplicon surveys and metagenomics has revolutionized the study of environmental microbiology and microbial ecology. In particular, metagenomic analysis of nucleic acids provides direct access to the genomes of the “uncultivated majority.” Accelerated by advances in sequencing technology, microbiologists have discovered more novel phyla, classes, genera, and genes from microorganisms in the first decade and a half of the twenty-first century than since these “many very little living animalcules” were first discovered by van Leeuwenhoek (Table 1). The unsurpassed diversity of soils promises continued exploration of a range of industrial,more » agricultural, and environmental functions. The ability to explore soil microbial communities with increasing capacity offers the highest promise for answering many outstanding who, what, where, when, why, and with whom questions such as: Which microorganisms are linked to which soil habitats? How do microbial abundances change with changing edaphic conditions? How do microbial assemblages interact and influence one another synergistically or antagonistically? What is the full extent of soil microbial diversity, both functionally and phylogenetically? What are the dynamics of microbial communities in space and time? How sensitive are microbial communities to a changing climate? What is the role of horizontal gene transfer in the stability of microbial communities? Do highly diverse microbial communities confer resistance and resilience in soils?« less

Invariant soil water potential at zero microbial respiration explained by hydrological discontinuity in dry soils

DOE PAGES

Manzoni, S.; Katul, G.

2014-09-30

We report that soil microbial respiration rates decrease with soil drying, ceasing below water potentials around -15 MPa. A proposed mechanism for this pattern is that under dry conditions, microbes are substrate limited because solute diffusivity is halted due to breaking of water film continuity. However, pore connectivity estimated from hydraulic conductivity and solute diffusivity (at Darcy's scale) is typically interrupted at much less negative water potentials than microbial respiration (-0.1 to -1 MPa). It is hypothesized here that the more negative respiration thresholds than at the Darcy's scale emerge because microbial activity is restricted to microscale soil patches thatmore » retain some hydrological connectivity even when it is lost at the macroscale. This hypothesis is explored using results from percolation theory and meta-analyses of respiration-water potential curves and hydrological percolation points. Lastly, when reducing the spatial scale from macroscale to microscale, hydrological and respiration thresholds become consistent, supporting the proposed hypothesis.« less

Small-scale barriers mitigate desertification processes and enhance plant recruitment in a degraded semiarid grassland

USGS Publications Warehouse

Fick, Stephen E; Decker, Cheryl E.; Duniway, Michael C.; Miller, Mark E.

2016-01-01

Anthropogenic desertification is a problem that plagues drylands globally; however, the factors which maintain degraded states are often unclear. In Canyonlands National Park on the Colorado Plateau of southeastern Utah, many degraded grasslands have not recovered structure and function >40 yr after release from livestock grazing pressure, necessitating active restoration. We hypothesized that multiple factors contribute to the persistent degraded state, including lack of seed availability, surficial soil-hydrological properties, and high levels of spatial connectivity (lack of perennial vegetation and other surface structure to retain water, litter, seed, and sediment). In combination with seeding and surface raking treatments, we tested the effect of small barrier structures (“ConMods”) designed to disrupt the loss of litter, seed and sediment in degraded soil patches within the park. Grass establishment was highest when all treatments (structures, seed addition, and soil disturbance) were combined, but only in the second year after installation, following favorable climatic conditions. We suggest that multiple limiting factors were ameliorated by treatments, including seed limitation and microsite availability, seed removal by harvester ants, and stressful abiotic conditions. Higher densities of grass seedlings on the north and east sides of barrier structures following the summer months suggest that structures may have functioned as artificial “nurse-plants”, sheltering seedlings from wind and radiation as well as accumulating wind-blown resources. Barrier structures increased the establishment of both native perennial grasses and exotic annuals, although there were species-specific differences in mortality related to spatial distribution of seedlings within barrier structures. The unique success of all treatments combined, and even then only under favorable climatic conditions and in certain soil patches, highlights that restoration success (and potentially, natural regeneration) often is contingent on many interacting factors.

Critical regimes driven by recurrent mobility patterns of reaction-diffusion processes in networks

NASA Astrophysics Data System (ADS)

Gómez-Gardeñes, J.; Soriano-Paños, D.; Arenas, A.

2018-04-01

Reaction-diffusion processes1 have been widely used to study dynamical processes in epidemics2-4 and ecology5 in networked metapopulations. In the context of epidemics6, reaction processes are understood as contagions within each subpopulation (patch), while diffusion represents the mobility of individuals between patches. Recently, the characteristics of human mobility7, such as its recurrent nature, have been proven crucial to understand the phase transition to endemic epidemic states8,9. Here, by developing a framework able to cope with the elementary epidemic processes, the spatial distribution of populations and the commuting mobility patterns, we discover three different critical regimes of the epidemic incidence as a function of these parameters. Interestingly, we reveal a regime of the reaction-diffussion process in which, counter-intuitively, mobility is detrimental to the spread of disease. We analytically determine the precise conditions for the emergence of any of the three possible critical regimes in real and synthetic networks.

Off-site transport of fungicides with runoff: A comparison of flutolanil and pentachloronitrobeneze applied to creeping bentgrass managed as a golf course fairway

USDA-ARS?s Scientific Manuscript database

Flutolanil and pentachloronitrobenzene (PCNB) are fungicides used to control or suppress foliar and soil borne diseases in turf and ornamental crops. On golf courses, sports fields, sod farms and commercial lawns these fungicides are used as preventive treatments to combat snow mold, brown patch an...

Traditional adaptation to natural processes of erosion and sedimentation on Yap Island

Treesearch

Marjorie C. Falanruw

1990-01-01

Yap is a high island with a mean annual rainfall of 3040 mm and considerable potential for erosion. The island once supported a dense population with a nature-intensive technology. The traditional food production system incorporated tree gardens which mimic natural forests in intercepting rainfall and holding the soil, and taro patch system which mimic swamp forests...

Soil properties in fire-consumed log burnout openings in a Missouri oak savanna

Treesearch

Charles C. Rhoades; A. J. Meier; A. J. Rebertus

2004-01-01

Downed logs are known to increase species diversity in many forest ecosystems by increasing resource and structural complexity and by altering fire behavior in fire-prone ecosystems. In a frequently burned oak savanna in central Missouri, combustion of downed logs formed patches that have remained free of herbaceous vegetation for more than 3 years. To assess the...

Ecosystem processes at the watershed scale: extending optimality theory from plot to catchment

Treesearch

Taehee Hwang; Lawrence Band; T.C. Hale

2009-01-01

The adjustment of local vegetation conditions to limiting soil water by either maximizing productivity or minimizing water stress has been an area of central interest in ecohydrology since Eagleson’s classic study. This work has typically been limited to consider one-dimensional exchange and cycling within patches and has not incorporated the effects of lateral...

Forage site selection by lesser snow geese during autumn staging on the Arctic National Wildlife Refuge, Alaska

USGS Publications Warehouse

Hupp, Jerry W.; Robertson, Donna G.

1998-01-01

Lesser snow geese (Chen caerulescens caerulescens) of the Western Canadian Arctic Population feed intensively for 2-4 weeks on the coastal plain of the Beaufort Sea in Canada and Alaska at the beginning of their autumn migration. Petroleum leasing proposed for the Alaskan portion of the staging area on the Arctic National Wildlife Refuge (ANWR) could affect staging habitats and their use by geese. Therefore we studied availability, distribution, and use by snow geese of tall and russett cotton-grass (Eriophorum angustifolium and E. russeolum, respectively) feeding habitats on the ANWR. We studied selection of feeding habitats at 3 spatial scales (feeding sites [0.06 m2], feeding patches [ca. 100 m2], and feeding areas [>1 ha]) during 1990-93. We used logistic regression analysis to discriminate differences in soil moisture and vegetation between 1,548 feeding sites where snow geese exploited individual cotton-grass plants and 1,143 unexploited sites at 61 feeding patches in 1990. Feeding likelihood increased with greater soil moisture and decreased where nonforage species were present. We tested the logistic regression model in 1991 by releasing human-imprinted snow geese into 4 10 × 20-m enclosed plots where plant communities had been mapped, habitats sampled, and feeding probabilities calculated. Geese selected more feeding sites per square meter in areas of predicted high quality feeding habitat (feeding probability ≥ 0.6) than in medium (feeding probability = 0.3-0.59) or poor (feeding probability < 0.3) quality habitat (P < 0.0001). Geese increasingly used medium quality areas and spent more time feeding as trials progressed and forage was presumably reduced in high quality habitats. We examined relationships between underground biomass of plants, feeding probability, and surface microrelief at 474 0.06- m2 sites in 20 thermokarst pits in 1992. Feeding probability was correlated with the percentage of underground biomass composed of cotton-grass (r = 0.56). Feeding probability and relative availability of cotton-grass forage were highest in flooded soils along the ecotone of flooded and upland habitats. In 1992, we also used the logistic regression model to estimate availability of high quality feeding sites on 192 80 × 90-m plots that were randomly located on 24 study areas. A mean of 1.6% of the area sampled in each plot was classified as high quality feeding habitat at 23 of the study areas. Relative availability of high quality sites was highest in troughs, thermokarst pits, and water tracks because saturated soils in those microreliefs were dominated by cotton-grass. Relative availability of high quality sites was lower in saturated soils of basins (low-centered polygons, wet meadows, and strangmoor) because that microrelief was dominated by Carex spp. Most (63%) of the saturated area on the ANWR coastal plain was in basins. We examined distribution of feeding patches relative to microrelief in 49 snow goose feeding areas in 1993. Only 2.5% of the tundra in each feeding area was exploited by snow geese. Snow geese preferentially fed in thermokarst pits, water tracks, and troughs, and avoided basins and uplands. Feeding areas had more thermokarst pit but less basin microrelief than adjacent randomly-selected areas. Thermokarst pits and water tracks occurred most frequently in regions of the coastal plain where geese were observed most often during aerial surveys (1982-93). Microrelief influenced selection of feeding patches and feeding areas and may have affected snow goose distribution on the ANWR. Potential feeding patches were widely distributed but composed a small percentage (≤2.5%) of the tundra landscape and were highly interspersed with less suitable habitat. The Western Canadian Arctic Population probably used a large staging area on the Beaufort Sea coastal plain because snow geese exploited a spatially and temporally heterogeneous resource.

Precipitation pulses and carbon fluxes in semiarid and arid ecosystems.

PubMed

Huxman, Travis E; Snyder, Keirith A; Tissue, David; Leffler, A Joshua; Ogle, Kiona; Pockman, William T; Sandquist, Darren R; Potts, Daniel L; Schwinning, Susan

2004-10-01

In the arid and semiarid regions of North America, discrete precipitation pulses are important triggers for biological activity. The timing and magnitude of these pulses may differentially affect the activity of plants and microbes, combining to influence the C balance of desert ecosystems. Here, we evaluate how a "pulse" of water influences physiological activity in plants, soils and ecosystems, and how characteristics, such as precipitation pulse size and frequency are important controllers of biological and physical processes in arid land ecosystems. We show that pulse size regulates C balance by determining the temporal duration of activity for different components of the biota. Microbial respiration responds to very small events, but the relationship between pulse size and duration of activity likely saturates at moderate event sizes. Photosynthetic activity of vascular plants generally increases following relatively larger pulses or a series of small pulses. In this case, the duration of physiological activity is an increasing function of pulse size up to events that are infrequent in these hydroclimatological regions. This differential responsiveness of photosynthesis and respiration results in arid ecosystems acting as immediate C sources to the atmosphere following rainfall, with subsequent periods of C accumulation should pulse size be sufficient to initiate vascular plant activity. Using the average pulse size distributions in the North American deserts, a simple modeling exercise shows that net ecosystem exchange of CO2 is sensitive to changes in the event size distribution representative of wet and dry years. An important regulator of the pulse response is initial soil and canopy conditions and the physical structuring of bare soil and beneath canopy patches on the landscape. Initial condition influences responses to pulses of varying magnitude, while bare soil/beneath canopy patches interact to introduce nonlinearity in the relationship between pulse size and soil water response. Building on this conceptual framework and developing a greater understanding of the complexities of these eco-hydrologic systems may enhance our ability to describe the ecology of desert ecosystems and their sensitivity to global change.

Altered Plant Litter and Microbial Composition Lead to Topsoil Organic Carbon Loss Over a Shrub-encroachment Gradient in an Inner Mongolia Grassland

NASA Astrophysics Data System (ADS)

Zhou, L.; Li, H.; Shen, H.; Xu, Y.; Wang, Y.; Xing, A.; Fang, J.

2017-12-01

Over the past 150 years, shrub encroachment has occurred in arid and semi-arid ecosystems resulting from climate change and increased human disturbance. Previous studies have revealed that shrub encroachment has substantial effects on habitat heterogeneity, aboveground biomass and bulk carbon content of grasslands, thereby affecting the regional carbon balance. Soil organic carbon (SOC) is mainly derived from aboveground litter, root litter and root exudates and is metabolized by microorganisms. The quality and quantity of plant litter together with soil microbial biomass are important drivers of SOC accumulation. However, the mechanisms regulating soil carbon accumulation by the shrub encroachment remain unclear and molecular evidence is particularly lacking. We use the data of the chemical composition of plant tissues and SOC, and the soil microbial communities to identify the effects of shrub encroachment on SOC accumulation in the top layer along a gradient of natural shrub cover in the grasslands of Inner Mongolia. Our finding indicates that nitrogen-rich legume-shrub encroachment led to soil carbon accumulation in the shrub patch, with more extensive carbon loss observed in the grassy matrix, which resulted in an overall carbon loss. In the pure grassland, a higher abundance of cutin and suberin and a lower concentration of free lipids were detected, suggesting the preservation of recalcitrant polymers derived from herb inputs. In the shrub-encroached grasslands, the labile shrub leaves did not decompose alone but were mixed with herb litter to promote the degradation of SOC via the priming of microbial activities. The SOC remained unchanged in the shrub patches with the increasing shrub cover, which might have been caused by the replacement of prior carbon decompositions with the fresh input of shrub leaves. Similarly, the SOC decreased significantly with increasing shrub cover in the grassy matrix, which likely resulted from insufficient fresh plant inputs compared with the prior carbon decompositions.

Bottom-up factors influencing riparian willow recovery in Yellowstone National Park

USGS Publications Warehouse

Tercek, M.T.; Stottlemyer, R.; Renkin, R.

2010-01-01

After the elimination of wolves (Canis lupis L.) in the 1920s, woody riparian plant communities on the northern range of Yellowstone National Park (YNP) declined an estimated 50%. After the reintroduction of wolves in 19951996, riparian willows (Salix spp.) on YNP's northern range showed significant growth for the first time since the 1920s. However, the pace of willow recovery has not been uniform. Some communities have exceeded 400 cm, while others are still at pre-1995 levels of 250 cm max. height) willow sites where willows had escaped elk (Cervus elaphus L.) browsing with "short" willow sites that could still be browsed. Unlike studies that manipulated willow height with fences and artificial dams, we examined sites that had natural growth differences in height since the reintroduction of wolves. Tall willow sites had greater water availability, more-rapid net soil nitrogen mineralization, greater snow depth, lower soil respiration rates, and cooler summer soil temperatures than nearby short willow sites. Most of these differences were measured both in herbaceous areas adjacent to the willow patches and in the willow patches themselves, suggesting that they were not effects of varying willow height recovery but were instead preexisting site differences that may have contributed to increased plant productivity. Our results agree with earlier studies in experimental plots which suggest that the varying pace of willow recovery has been influenced by abiotic limiting factors that interact with top-down reductions in willow browsing by elk. ?? 2010 Western North American Naturalist.

Computational study concerning the effect of some pesticides on the Proteus Mirabilis catalase activity

NASA Astrophysics Data System (ADS)

Isvoran, Adriana

2016-03-01

Assessment of the effects of the herbicides nicosulfuron and chlorsulfuron and the fungicides difenoconazole and drazoxlone upon catalase produced by soil microorganism Proteus mirabilis is performed using the molecular docking technique. The interactions of pesticides with the enzymes are predicted using SwissDock and PatchDock docking tools. There are correlations for predicted binding energy values for enzyme-pesticide complexes obtained using the two docking tools, all the considered pesticides revealing favorable binding to the enzyme, but only the herbicides bind to the catalytic site. These results suggest the inhibitory potential of chlorsulfuron and nicosulfuron on the catalase activity in soil.

'Laguna Hollow'Undisturbed

NASA Technical Reports Server (NTRS)

2004-01-01

This image shows the patch of soil at the bottom of the shallow depression dubbed 'Laguna Hollow' where the Mars Exploration Rover Spirit will soon begin trenching. Scientists are intrigued by the clustering of small pebbles and the crack-like fine lines, which indicate a coherent surface that expands and contracts. A number of processes can cause materials to expand and contract, including cycles of heating and cooling; freezing and thawing; and rising and falling of salty liquids within a substance. This false-color image was created using the blue, green and infrared filters of the rover's panoramic camera. Scientists chose this particular combination of filters to enhance the heterogeneity of the martian soil.

A Graph Approach to Mining Biological Patterns in the Binding Interfaces.

PubMed

Cheng, Wen; Yan, Changhui

2017-01-01

Protein-RNA interactions play important roles in the biological systems. Searching for regular patterns in the Protein-RNA binding interfaces is important for understanding how protein and RNA recognize each other and bind to form a complex. Herein, we present a graph-mining method for discovering biological patterns in the protein-RNA interfaces. We represented known protein-RNA interfaces using graphs and then discovered graph patterns enriched in the interfaces. Comparison of the discovered graph patterns with UniProt annotations showed that the graph patterns had a significant overlap with residue sites that had been proven crucial for the RNA binding by experimental methods. Using 200 patterns as input features, a support vector machine method was able to classify protein surface patches into RNA-binding sites and non-RNA-binding sites with 84.0% accuracy and 88.9% precision. We built a simple scoring function that calculated the total number of the graph patterns that occurred in a protein-RNA interface. That scoring function was able to discriminate near-native protein-RNA complexes from docking decoys with a performance comparable with that of a state-of-the-art complex scoring function. Our work also revealed possible patterns that might be important for binding affinity.

Desert disturbance assessments of regional oil exploitation by Aster and ETM+ images in Taklimakan Desert China.

PubMed

Ouyang, Wei; Hao, Fang-Hua; Fu, Yongshuo; Zhang, Jiaxun

2008-09-01

To feed its rapidly growing energy demand, oil exploitation in China has never been more intensive. The most obvious characteristics of oil exploitation are progressive and regional, which can be monitored by remote sensing, such as land use and cover change, either perpetual or temporary, during oil field development such as construction of oil well, roads, transportation systems and other facilities. In this paper, the oil field located on the north edge of Taklimakan Desert, in the Tarim River watershed in northwest of China. The disturbance effects of regional oil exploitation were the main content of regional environmental managements and monitoring. Based on Enhanced Thematic Mapper Plus (ETM+) and Aster images, analyzed regional land use and landscape change from 2001 to 2003. By the comparison, it can be concluded that the ecological quality was deteriorating in these 3 years. The woodland was degrading to grass and desert. The area of woodland dropped from 9.06 km(2) in 2001 to 3.24 km(2) in 2003 with a 64.23% decrease. At the same time, the area of shrubbery lessened 18.23%. On the other hand, the whole area of desert and Saline soils inflated from 15.08 km(2) in 2001 to 25.36 km(2) in 2003. The patch number of bare land did climb dramatically, but single patch area increased. The research demonstrated that desert and Saline soils patches were activated by the human behavior and climate change. The information from the ETM+ and Aster images was proved be an effective and efficient way to be applied in regional environmental managements.

Evidence of Facilitation Cascade Processes as Drivers of Successional Patterns of Ecosystem Engineers at the Upper Altitudinal Limit of the Dry Puna.

PubMed

Malatesta, Luca; Tardella, Federico Maria; Piermarteri, Karina; Catorci, Andrea

2016-01-01

Facilitation processes constitute basic elements of vegetation dynamics in harsh systems. Recent studies in tropical alpine environments demonstrated how pioneer plant species defined as "ecosystem engineers" are capable of enhancing landscape-level richness by adding new species to the community through the modification of microhabitats, and also provided hints about the alternation of different ecosystem engineers over time. Nevertheless, most of the existing works analysed different ecosystem engineers separately, without considering the interaction of different ecosystem engineers. Focusing on the altitudinal limit of Peruvian Dry Puna vegetation, we hypothesized that positive interactions structure plant communities by facilitation cascades involving different ecosystem engineers, determining the evolution of the microhabitat patches in terms of abiotic resources and beneficiary species hosted. To analyze successional mechanisms, we used a "space-for-time" substitution to account for changes over time, and analyzed data on soil texture, composition, and temperature, facilitated species and their interaction with nurse species, and surface area of engineered patches by means of chemical analyses, indicator species analysis, and rarefaction curves. A successional process, resulting from the dynamic interaction of different ecosystem engineers, which determined a progressive amelioration of soil conditions (e.g. nitrogen and organic matter content, and temperature), was the main driver of species assemblage at the community scale, enhancing species richness. Cushion plants act as pioneers, by starting the successional processes that continue with shrubs and tussocks. Tussock grasses have sometimes been found to be capable of creating microhabitat patches independently. The dynamics of species assemblage seem to follow the nested assemblage mechanism, in which the first foundation species to colonize a habitat provides a novel substrate for colonization by other foundation species through a facilitation cascade process.

Evidence of Facilitation Cascade Processes as Drivers of Successional Patterns of Ecosystem Engineers at the Upper Altitudinal Limit of the Dry Puna

PubMed Central

2016-01-01

Facilitation processes constitute basic elements of vegetation dynamics in harsh systems. Recent studies in tropical alpine environments demonstrated how pioneer plant species defined as “ecosystem engineers” are capable of enhancing landscape-level richness by adding new species to the community through the modification of microhabitats, and also provided hints about the alternation of different ecosystem engineers over time. Nevertheless, most of the existing works analysed different ecosystem engineers separately, without considering the interaction of different ecosystem engineers. Focusing on the altitudinal limit of Peruvian Dry Puna vegetation, we hypothesized that positive interactions structure plant communities by facilitation cascades involving different ecosystem engineers, determining the evolution of the microhabitat patches in terms of abiotic resources and beneficiary species hosted. To analyze successional mechanisms, we used a “space-for-time” substitution to account for changes over time, and analyzed data on soil texture, composition, and temperature, facilitated species and their interaction with nurse species, and surface area of engineered patches by means of chemical analyses, indicator species analysis, and rarefaction curves. A successional process, resulting from the dynamic interaction of different ecosystem engineers, which determined a progressive amelioration of soil conditions (e.g. nitrogen and organic matter content, and temperature), was the main driver of species assemblage at the community scale, enhancing species richness. Cushion plants act as pioneers, by starting the successional processes that continue with shrubs and tussocks. Tussock grasses have sometimes been found to be capable of creating microhabitat patches independently. The dynamics of species assemblage seem to follow the nested assemblage mechanism, in which the first foundation species to colonize a habitat provides a novel substrate for colonization by other foundation species through a facilitation cascade process. PMID:27902757

Spatial and temporal variability of N2O emission on grazed pastures - influence of management and meteorological drivers

NASA Astrophysics Data System (ADS)

Ammann, Christof; Voglmeier, Karl; Jocher, Markus

2017-04-01

Grazed pastures are considered as strong sources of the greenhouse gas nitrous oxide (N2O) with local hot-spots resulting from the uneven spatial distribution of the excretion of the grazing animals. Especially urine patches can result in a high local nitrogen (N) surplus, which can cause large deviations from average soil conditions. The strong spatial and temporal variability of the gaseous emissions represents an inherent problem for the quantification, interpretation and modelling. Micrometeorological methods integrating over a larger domain like the eddy covariance method are well suited to quantify the integrated ecosystem emissions of N2O. In contrast, chamber methods are more useful to investigate specific underlying processes and their dependences on driving parameters. We present results of a pasture experiment in western Switzerland where eddy covariance and chamber measurements of N2O fluxes have been performed using a very sensitive and fast response quantum cascade laser (QCL) instrument. Small scale emissions of N2O from dung and urine patches as well as from other "background" pasture surface areas were quantified using an optimized 'fast-box' chamber system. Variable and partly high N2O emissions of the pasture were observed during all seasons. Beside management factors (grazing phases, fertiliser application), temperature and soil moisture showed a large effect on the fluxes. Fresh urine patches from grazing cows were found to be main emission sources and their temporal dynamics was studied in detail. We present a first approach to up-scale the chamber measurements to the field-scale and compare the results with the eddy covariance measurements.

Greenhouse Gas Emission from Beef Cattle Grazing Systems on Temperate Grasslands

NASA Astrophysics Data System (ADS)

Rice, C. W.; Rivera-Zayas, J.

2017-12-01

At a global scale, cattle production is responsible for 65% of GHG emissions. During 2014 cattle management was the largest emitters of methane (CH4) representing a 23.2% of the total CH4 from anthropogenic activities. Since 2014, gas samples have been gathered and analyzed for carbon dioxide (CO2), CH4 and nitrous oxide (N2O) from three grazing areas under three different burning regimes at the temperate grassland of Konza Prairie Biological Station in Kansas. Burning regimes included one site in annually burned, and two sites with patch burned every three years on offset years. Burning regimes showed no effect in N2O emissions (p<0.05). Annual burning lowered CO2 emissions relative to patch burned. There was a significant effect of interaction between emissions and season. Maximum CO2 and CH4 fluxes were gathered during summer and fall; which coincided with high biomass seasons. Weather and edaphological conditions during fall and winter increase N2O emissions. A decrease in CO2 and CH4 fluxes, and N2O and CH4 soil uptake occurred during winter. Data gathered since 2014 implies CH4 and N2O are consumed on grazed grassland soils; with an increase in consumption with patch burning. Results quantify the role of temperate grasslands as a sink of CH4, and a possible sink of N2O. This experiment evidence CO2, CH4 and N2O emissions behavior as a consequence of burning regimes, and quantify the role of temperate grasslands as a sink of CH4 and N2O in order to understand best practice for resilience of beef cattle management.

Root morphology and mycorrhizal type strongly influence root production in nutrient hot spots of mixed forests

DOE PAGES

Chen, Weile; Koide, Roger T.; Eissenstat, David M.

2017-04-26

Plants compete for nutrients using a range of strategies. We investigated nutrient foraging within nutrient hot-spots simultaneously available to plant species with diverse root traits. We hypothesized that there would be more root proliferation by thin-root species than by thick-root species, and that root proliferation by thin-root species would limit root proliferation by thick-root species. We conducted a root ingrowth experiment in a temperate forest in eastern USA where root systems of different tree species could interact. Tree species varied in the thickness of their absorptive roots, and were associated with either ectomycorrhizal (EM) or arbuscular mycorrhizal (AM) fungi. Thus,more » there were thin- and thick-root AM and thin- and thick-root EM plant functional groups. Half the ingrowth cores were amended with organic nutrients (dried green leaves). Relative root length abundance, the proportion of total root length in a given soil volume occupied by a particular plant functional group, was calculated for the original root population and ingrowth roots after 6 months. The shift in relative root length abundance from original to ingrowth roots was positive in thin-root species but negative in thick-root species (p < .001), especially in unamended patches (AM: +6% vs. -7%; EM: +8% vs. -9%). Being thin-rooted may thus allow a species to more rapidly recolonize soil after a disturbance, which may influence competition for nutrients. Moreover, we observed that nutrient additions amplified the shift in root length abundance of thin over thick roots in AM trees (+13% vs. -14%), but not in EM trees (+1% vs -3%). In contrast, phospholipid fatty acid biomarkers suggested that EM fungal hyphae strongly proliferated in nutrient hot-spots whereas AM fungal hyphae exhibited only modest proliferation. We found no evidence that when growing in the shared patch, the proliferation of thin roots inhibited the growth of thick roots. As a result, knowledge of root morphology and mycorrhizal type of co-existing tree species may improve prediction of patch exploitation and nutrient acquisition in heterogeneous soils.« less

Root morphology and mycorrhizal type strongly influence root production in nutrient hot spots of mixed forests

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Weile; Koide, Roger T.; Eissenstat, David M.

Plants compete for nutrients using a range of strategies. We investigated nutrient foraging within nutrient hot-spots simultaneously available to plant species with diverse root traits. We hypothesized that there would be more root proliferation by thin-root species than by thick-root species, and that root proliferation by thin-root species would limit root proliferation by thick-root species. We conducted a root ingrowth experiment in a temperate forest in eastern USA where root systems of different tree species could interact. Tree species varied in the thickness of their absorptive roots, and were associated with either ectomycorrhizal (EM) or arbuscular mycorrhizal (AM) fungi. Thus,more » there were thin- and thick-root AM and thin- and thick-root EM plant functional groups. Half the ingrowth cores were amended with organic nutrients (dried green leaves). Relative root length abundance, the proportion of total root length in a given soil volume occupied by a particular plant functional group, was calculated for the original root population and ingrowth roots after 6 months. The shift in relative root length abundance from original to ingrowth roots was positive in thin-root species but negative in thick-root species (p < .001), especially in unamended patches (AM: +6% vs. -7%; EM: +8% vs. -9%). Being thin-rooted may thus allow a species to more rapidly recolonize soil after a disturbance, which may influence competition for nutrients. Moreover, we observed that nutrient additions amplified the shift in root length abundance of thin over thick roots in AM trees (+13% vs. -14%), but not in EM trees (+1% vs -3%). In contrast, phospholipid fatty acid biomarkers suggested that EM fungal hyphae strongly proliferated in nutrient hot-spots whereas AM fungal hyphae exhibited only modest proliferation. We found no evidence that when growing in the shared patch, the proliferation of thin roots inhibited the growth of thick roots. As a result, knowledge of root morphology and mycorrhizal type of co-existing tree species may improve prediction of patch exploitation and nutrient acquisition in heterogeneous soils.« less

Soil sampling in serenity

NASA Astrophysics Data System (ADS)

2010-05-01

Vladimir Samarkin, Michael Madigan and colleagues travelled to Don Juan Pond in Antarctica, in an attempt to understand life on Mars. Instead, they discovered an unexpected link between the geosphere and atmosphere.

Neonatal Atlas Construction Using Sparse Representation

PubMed Central

Shi, Feng; Wang, Li; Wu, Guorong; Li, Gang; Gilmore, John H.; Lin, Weili; Shen, Dinggang

2014-01-01

Atlas construction generally includes first an image registration step to normalize all images into a common space and then an atlas building step to fuse the information from all the aligned images. Although numerous atlas construction studies have been performed to improve the accuracy of the image registration step, unweighted or simply weighted average is often used in the atlas building step. In this article, we propose a novel patch-based sparse representation method for atlas construction after all images have been registered into the common space. By taking advantage of local sparse representation, more anatomical details can be recovered in the built atlas. To make the anatomical structures spatially smooth in the atlas, the anatomical feature constraints on group structure of representations and also the overlapping of neighboring patches are imposed to ensure the anatomical consistency between neighboring patches. The proposed method has been applied to 73 neonatal MR images with poor spatial resolution and low tissue contrast, for constructing a neonatal brain atlas with sharp anatomical details. Experimental results demonstrate that the proposed method can significantly enhance the quality of the constructed atlas by discovering more anatomical details especially in the highly convoluted cortical regions. The resulting atlas demonstrates superior performance of our atlas when applied to spatially normalizing three different neonatal datasets, compared with other start-of-the-art neonatal brain atlases. PMID:24638883

Numerical simulation of faulting in the Sunda Trench shows that seamounts may generate megathrust earthquakes

NASA Astrophysics Data System (ADS)

Jiao, L.; Chan, C. H.; Tapponnier, P.

2017-12-01

The role of seamounts in generating earthquakes has been debated, with some studies suggesting that seamounts could be truncated to generate megathrust events, while other studies indicate that the maximum size of megathrust earthquakes could be reduced as subducting seamounts could lead to segmentation. The debate is highly relevant for the seamounts discovered along the Mentawai patch of the Sunda Trench, where previous studies have suggested that a megathrust earthquake will likely occur within decades. In order to model the dynamic behavior of the Mentawai patch, we simulated forearc faulting caused by seamount subducting using the Discrete Element Method. Our models show that rupture behavior in the subduction system is dominated by stiffness of the overriding plate. When stiffness is low, a seamount can be a barrier to rupture propagation, resulting in several smaller (M≤8.0) events. If, however, stiffness is high, a seamount can cause a megathrust earthquake (M8 class). In addition, we show that a splay fault in the subduction environment could only develop when a seamount is present, and a larger offset along a splay fault is expected when stiffness of the overriding plate is higher. Our dynamic models are not only consistent with previous findings from seismic profiles and earthquake activities, but the models also better constrain the rupture behavior of the Mentawai patch, thus contributing to subsequent seismic hazard assessment.

Effect of land use land cover change on soil erosion potential in an agricultural watershed.

PubMed

Sharma, Arabinda; Tiwari, Kamlesh N; Bhadoria, P B S

2011-02-01

Universal soil loss equation (USLE) was used in conjunction with a geographic information system to determine the influence of land use and land cover change (LUCC) on soil erosion potential of a reservoir catchment during the period 1989 to 2004. Results showed that the mean soil erosion potential of the watershed was increased slightly from 12.11 t ha(-1) year(-1) in the year 1989 to 13.21 t ha(-1) year(-1) in the year 2004. Spatial analysis revealed that the disappearance of forest patches from relatively flat areas, increased in wasteland in steep slope, and intensification of cultivation practice in relatively more erosion-prone soil were the main factors contributing toward the increased soil erosion potential of the watershed during the study period. Results indicated that transition of other land use land cover (LUC) categories to cropland was the most detrimental to watershed in terms of soil loss while forest acted as the most effective barrier to soil loss. A p value of 0.5503 obtained for two-tailed paired t test between the mean erosion potential of microwatersheds in 1989 and 2004 also indicated towards a moderate change in soil erosion potential of the watershed over the studied period. This study revealed that the spatial location of LUC parcels with respect to terrain and associated soil properties should be an important consideration in soil erosion assessment process.

Alaska High School Students Integrate Forest Ecology, Glacial Landscape Dynamics, and Human Maritime History in a Field Mapping Course at Cape Decision Lighthouse, Kuiu Island, Southeast Alaska

NASA Astrophysics Data System (ADS)

Connor, C. L.; Carstensen, R.; Domke, L.; Donohoe, S.; Clark, A.; Cordero, D.; Otsea, C.; Hakala, M.; Parks, R.; Lanwermeyer, S.; Discover Design Research (Ddr)

2010-12-01

Alaskan 10th and 11th graders earned college credit at Cape Decision Lighthouse as part of a 12-day, summer field research experience. Students and faculty flew to the southern tip of Kuiu Island located 388 km south of Juneau. Kuiu is the largest uninhabited island in southeastern Alaska. This field-based, introduction-to-research course was designed to engage students in the sciences and give them skills in technology, engineering, and mathematics. Two faculty, a forest naturalist and a geologist, introduced the students to the use of hand held GPS receivers, GIS map making, field note-taking and documentary photography, increment borer use, and soil studies techniques. Daily surveys across the region, provided onsite opportunities for the faculty to introduce the high schoolers to the many dimensions of forest ecology and plant succession. Students collected tree cores using increment borers to determine “release dates” providing clues to past wind disturbance. They discovered the influence of landscape change on the forest by digging soil pits and through guided interpretation of bedrock outcrops. The students learned about glacially influenced hydrology in forested wetlands during peat bog hikes. They developed an eye for geomorphic features along coastal traverses, which helped them to understand the influences of uplift through faulting and isostatic rebound in this tectonically active and once glaciated area. They surveyed forest patches to distinguish between regions of declining yellow-cedar from wind-disturbed spruce forests. The students encountered large volumes of primarily plastic marine debris, now stratified by density and wave energy, throughout the southern Kuiu intertidal zone. They traced pre-European Alaska Native subsistence use of the area, 19th and 20th century Alaska Territorial Maritime history, and learned about the 21st century radio tracking of over 10,000 commercial vessels by the Marine Exchange of Alaska from its many stations that include the Cape Decision Lighthouse. The students produced preliminary maps in ArcGIS and journals in Indesign, using laptops in a field camp GIS lab, powered by solar cells, at the Cape Decision Lighthouse. They presented the results of their research at a university convened Discover Design Research Forum in Juneau, at the end of their field work. The course was co-sponsored by the University Alaska Southeast, the Juneau Economic Development Council, and the Cape Decision Lighthouse Society.

Ammonia volatilization from artificial dung and urine patches measured by the equilibrium concentration technique (JTI method)

NASA Astrophysics Data System (ADS)

Saarijärvi, K.; Mattila, P. K.; Virkajärvi, P.

The aim of this study was to investigate the dynamics of ammonia (NH 3) volatilization from intensively managed pastures on a soil type typical of the dairy production area in Finland and to clarify the effect of rainfall on NH 3 volatilization. The study included two experiments. In Experiment 1 the total amount of NH 3-N emitted was calculated based on the annual surface coverage of dung (4%) and urine (17%). The application rate of total N in the simulated dung and urine patches was approximately 47 g N m -2 and 113 g N m -2, respectively. In Experiment 1 the general level of NH 3 emissions from the urine patches was high and the peak volatilization rate was 0.54 g NH 3-N m -2 h -1. As expected, emissions from the dung pats were clearly lower with a maximum rate of 0.10 g NH 3-N m -2 h -1. The total emission calculated for the whole pasture area (stocking rate four cows ha -1 y -1, urine coverage 17% and dung coverage 4%) was 16.1 kg NH 3-N ha -1. Approximately 96% of the total emission originated from urine. In Experiment 2 we measured the emissions from urine only and the treatments on the urine patches were: (1) no irrigation, (2) 5+5 mm and (3) 20 mm irrigation. The peak emission rates were 0.13, 0.09 and 0.04 g NH 3-N m -2 h -1 and the total emissions were 6.9, 3.0 and 1.7 kg NH 3-N ha -1, for treatments (1), (2) and (3), respectively. In both measurements over 80% of the total emission occurred during the first 48 h and there was a clear diurnal rhythm. Increasing rainfall markedly decreased NH 3 emission. Volatilization was highest with dry and warm soil. The JTI method appeared to be suitable for measuring NH 3 volatilization in this kind of experiment. According to our results, the importance of pastures as a source of NH 3 emission in Finland is minor.

The fate of seeds in the soil: a review of the influence of overland flow on seed removal and its consequences for the vegetation of arid and semiarid patchy ecosystems

NASA Astrophysics Data System (ADS)

Bochet, E.

2015-01-01

Since seeds are the principle means by which plants move across the landscape, the final fate of seeds plays a fundamental role in the assemblage, functioning and dynamics of plant communities. Once seeds land on the soil surface after being dispersed from the parent plant, they can be moved horizontally by surface runoff. In arid and semiarid patchy ecosystems, where seeds are scattered into a very heterogeneous environment and intense rainfalls occur, the transport of seeds by runoff to new sites may be an opportunity for seeds to reach more favourable sites for seed germination and seedling survival. Although seed transport by runoff may be of vital importance for the recruitment of plants in these ecosystems, it has received little attention in the scientific literature, especially among soil scientists. The main goals of this review paper are (1) to offer an updated conceptual model of seed fate with a focus on seed destiny in and on the soil; (2) to review studies on seed fate in overland flow and the ecological implications seed transport by runoff has for the origin, spatial patterning and maintenance of patches in arid and semiarid patchy ecosystems; and finally (3) to point out directions for future research. This review shows that seed fate in overland flow may result either in the export of seeds from the system (seed loss) or in the spatial redistribution of seeds within the system through short-distance seed movements (seed displacement). Seed transport by runoff depends on rainfall, slope and soil characteristics. Susceptibility of seed removal varies highly between species and is mainly related to seed traits, including seed size, seed shape, presence of appendages, and ability of a seed to secrete mucilage. Although initially considered as a risk of seed loss, seed removal by runoff has recently been described as an ecological driver that shapes plant composition from the first phases of the plant life by favouring species with seeds able to resist erosion and by selecting for plant traits that prevent seed loss. Moreover, the interaction of seed transport by overland flow with the high seed trapping capacity of vegetated patches results in a "patch-to-patch" transport of seeds that plays a relevant role in vegetation establishment and patterning in arid and semiarid patchy ecosystems. Overall, this review shows how the knowledge about seed fate in overland flow can be used to explain a number of important characteristics of whole plant communities. It also underlines important gaps in knowledge that should be filled in. Future lines of research are proposed in order to broaden our understanding of the origin, maintenance and dynamics of patchiness in arid and semiarid ecosystems and to improve restoration success of intensively eroded ecosystems. Among the most exciting challenges, empirical studies are needed to understand the relevance of short-distance seed displacements in the origin and maintenance of patchiness, addressing the feedbacks between structure and function and abiotic and biotic components, in order to validate existing models about the dynamics of arid and semiarid ecosystems and help to predict future changes under the scenarios of climate change.

Worming Students into Science.

ERIC Educational Resources Information Center

Hanif, Muhammad; Harrod, Tammy

1997-01-01

Describes the construction of a sturdy earthworm box that can provide students with firsthand experience with earthworms. Presents activities that enable students to observe earthworms and discover how they enrich the soil. (JRH)

Soil development as limiting factor for shrub expansion in southwestern Greenland

NASA Astrophysics Data System (ADS)

Caviezel, Chatrina; Hunziker, Matthias; Zoller, Oliver; Wüthrich, Christoph; Kuhn, Nikolaus J.

2014-05-01

Southern Greenland currently experiences an increase in summer temperatures and a prolonged growing season (Masson-Delmotte et al. 2012), resulting in an increased shrub cover at the boreal - tundra border ecotone (Normand et al. 2013). These findings suggest the beginning of a greener Greenland in which tundra vegetation is transformed to a boreal woody flora. However, vegetation at borderline ecotones is influenced by further ecologic factors than just temperature. In this study, the ecologic conditions at a selection of sites along an elevation gradient near Igaliku in southern Greenland were examined to identify potential factors limiting the expansion of woody vegetation apart from temperature. The sites differ in elevation, topography, shrub density and soil parent material. The three study sites comprise i) well established birch shrubs growing between 50 and 180 m a.s.l., where the parent material origins from the Julianehab granite (Brooks 2012); ii) extended shrub patches at about 250 m a.s.l., where the parent material consists of Gardar Sandstones and Lavas (Brooks 2012) and iii) restricted shrub patches at an elevation of 250 m a.s.l., where the soil parent material originates from the Gardar intrusions (Brooks 2012). The extent of the shrub areas, topography and soil moisture were mapped, additionally soil samples were analyzed for C-and N-content, texture including coarse fraction and pH and used as soil development indicators. Our results show that the topographic setting regulates the existence or absence of soil while the soil parent material is an important limiting factor for soil moisture. According to these findings, we suggest that a high proportion of areas where temperature increase would allow the increase of shrub cover is not suitable for a woody flora. Brooks, Kent. 2012. "A Tale of Two Intrusions—where Familiar Rock Names No Longer Suffice." Geology Today 28 (1): 13-19. doi:10.1111/j.1365-2451.2012.00815.x. Masson-Delmotte, V., D. Swingedouw, A. Landais, M. S. Seidenkrantz, E. Gauthier, V. Bichet, C. Massa, B. Perren, V. Jomelli, and G. Adalgeirsdottir. 2012. "Greenland Climate Change: From the Past to the Future." Wiley Interdisciplinary Reviews: Climate Change. http://onlinelibrary.wiley.com/doi/10.1002/wcc.186/full. Normand, Signe, Christophe Randin, Ralf Ohlemüller, Christian Bay, Toke T. Høye, Erik D. Kjær, Christian Körner, et al. 2013. "A Greener Greenland? Climatic Potential and Long-Term Constraints on Future Expansions of Trees and Shrubs." Philosophical Transactions of the Royal Society B: Biological Sciences 368 (1624) (August 19): 20120479. doi:10.1098/rstb.2012.0479.

Organic and inorganic nitrogen pools in talus fields and subtalus water, Green Lakes Valley, Colorado front range

USGS Publications Warehouse

Williams, M.W.; Davinroy, T.; Brooks, P.D.

1997-01-01

Organic and inorganic pools of nitrogen (N) were measured in talus fines or 'soils' and subtalus water during the summer of 1995 in the alpine Green Lakes Valley catchment of the Colorado Front Range. Nineteen talus soil samples were divided into four classes: subtalus dry, subtalus wet, surface vegetated and surface bare. The size of the individual talus soil patches ranged from 0.5 to 12.0 m2 in area, with bulk density ranging from 0-98 to 1-71 kg m-3 and soil texture ranging from sandy gravel in the subsurface talus to a loam in the vegetated surface. All samples contained KCl-extractable NH4+ and NO3-, organic N and carbon (C), and 17 of 19 samples contained microbial biomass. The mean subtalus values for KCl-extractable NH4-, of 3.2 mg N kg-1, and NO3-, of 1.0 mg N kg-1, were comparable with developed alpine soils on Niwot Ridge. Average microbial biomass in subtalus soils of 5.4 mg N kg-1 and total N of 1000 mg N kg-1 were about an order of magnitude lower than alpine tundra soils, reflecting the reduced amount of vegetation in talus areas. However, these measurements in surface-vegetated patches of talus were comparable with the well-developed soils on Niwot Ridge. These measurements in talus of microbial biomass, total N and KCl-extractable NH4+ and NO3-, show that there is sufficient biotically conditioned 'soil' within talus fields to influence the solute content of interstitial waters. Mean NO3- concentrations of 20 ??eq 1-1 from 29 samples of subtalus water were significantly higher than the 6-7 ??eq 1-1 in snow, while NH4+ concentrations in subtalus water of 0??7 ??eq 1-1 was significantly lower than in snow at 5??2 ??eq 1-1 (p = 0??001). Nitrate concentrations in subtalus water were significantly (p < 0??0001) correlated with concentrations of geochemica??l weathering products such as Ca2+ (r2 = 0??84) and silica (r2 = 0??49). The correlation of NO3- in subtalus water with geochemical weathering products suggests that NO3- concentrations in subtalus water increased with increased residence time, consistent with a biological source for this subtalus water NO3-. The high NO3- concentrations in subtalus water compared with atmospheric deposition of NO3- suggests that NO3- in talus fields may contribute to NO3- in stream waters of high-elevation catchments. ?? 1997 John Wiley & Sons, Ltd.

Temporal variability of soil water repellency in field conditions under humid Mediterranean climate (South of Spain)

NASA Astrophysics Data System (ADS)

Martinez-Murillo, Juan F.; Gabarron-Galeote, Miguel A.; Ruiz-Sinoga, Jose D.

2013-04-01

Soil water repellency (SWR) has become an important field of scientific study because of its effects on soil hydrological behavior, including reduced matrix infiltration, development of fingered flow in structural or textural preferential flow paths, irregular wetting fronts, and increased runoff generation and soil erosion. The aim of this study is to evaluate the temporal variability of SWR in Mediterranean rangeland under humid Mediterranean climatic conditions (Tª=14.5 °C; P=1,010 mm y-1) in South of Spain. Every month from September 2008 to May 2009 (rainy season), soil moisture and SWR was measured in field conditions by means of gravimetric method and Water Drop Penetration Test, respectively. The entire tests were performed in differente eco-geomorphological conditions in the experimental site: North and South aspect hillslopes and beneath shrub and bare soil in every of them. The results indicate that: i) climatic conditions seem to be more transcendent than the vegetal cover for explaining the temporal variability of SWR in field conditions; ii) thus, SWR appears to be controlled by the antecedent rainfall and soil moisture; iii) more severity SWR were observed in patches characterized by sandier soils and/or greater organic matter contents; and iv) the factor 'hillslope aspect' was not found very influential in the degree of SWR.

Hydraulic redistribution: limitations for plants in saline soils.

PubMed

Bazihizina, Nadia; Veneklaas, Erik J; Barrett-Lennard, Edward G; Colmer, Timothy D

2017-10-01

Hydraulic redistribution (HR), the movement of water from wet to dry patches in the soil via roots, occurs in different ecosystems and plant species. By extension of the principle that HR is driven by gradients in soil water potential, HR has been proposed to occur for plants in saline soils. Despite the inherent spatial patchiness and salinity gradients in these soils, the lack of direct evidence of HR in response to osmotic gradients prompted us to ask the question: are there physical or physiological constraints to HR for plants in saline environments? We propose that build-up of ions in the root xylem sap and in the leaf apoplast, with the latter resulting in a large predawn disequilibrium of water potential in shoots compared with roots and soil, would both impede HR. We present a conceptual model that illustrates how processes in root systems in heterogeneous salinity with water potential gradients, even if equal to those in non-saline soils, will experience a dampened magnitude of water potential gradients in the soil-plant continuum, minimizing or preventing HR. Finally, we provide an outlook for understanding the relevance of HR for plants in saline environments by addressing key research questions on plant salinity tolerance. © 2017 John Wiley & Sons Ltd.

Quantifying the influence of deep soil moisture on ecosystem albedo: The role of vegetation

NASA Astrophysics Data System (ADS)

Sanchez-Mejia, Zulia Mayari; Papuga, Shirley Anne; Swetish, Jessica Blaine; van Leeuwen, Willem Jan Dirk; Szutu, Daphne; Hartfield, Kyle

2014-05-01

As changes in precipitation dynamics continue to alter the water availability in dryland ecosystems, understanding the feedbacks between the vegetation and the hydrologic cycle and their influence on the climate system is critically important. We designed a field campaign to examine the influence of two-layer soil moisture control on bare and canopy albedo dynamics in a semiarid shrubland ecosystem. We conducted this campaign during 2011 and 2012 within the tower footprint of the Santa Rita Creosote Ameriflux site. Albedo field measurements fell into one of four Cases within a two-layer soil moisture framework based on permutations of whether the shallow and deep soil layers were wet or dry. Using these Cases, we identified differences in how shallow and deep soil moisture influence canopy and bare albedo. Then, by varying the number of canopy and bare patches within a gridded framework, we explore the influence of vegetation and soil moisture on ecosystem albedo. Our results highlight the importance of deep soil moisture in land surface-atmosphere interactions through its influence on aboveground vegetation characteristics. For instance, we show how green-up of the vegetation is triggered by deep soil moisture, and link deep soil moisture to a decrease in canopy albedo. Understanding relationships between vegetation and deep soil moisture will provide important insights into feedbacks between the hydrologic cycle and the climate system.

NIR & MIR spectroscopy as an effective tool for detecting urban influences on soils

NASA Astrophysics Data System (ADS)

Brook, Anna; Kopel, Daniella; Wittenberg, Lea

2016-04-01

Soil supports ecosystem functions and services, sustains ecosystems and biodiversity, yet in the urban spreading world of today, soil as a resource is in constant danger. Human society takes for granted the services provided by open green patches allocated within and nearby cities, with no consideration of ramifications of urban development on those areas. The urban ecology science recognizes the need to learn, identify and monitor the soils of cities - urban soils. The definitions of those soils are mainly descriptive, since urban soils do not submitted to the pedological process as natural soils. The main objective of this paper is to characterize urban soils in open green undisturbed patches by mineralogical composition. This goal was achieved using field and laboratory spectroscopy across visible near, short wave infrared regions and laboratory thermal mid infrared region. The majority of the studies on urban soils concentrate on identifying and mapping of pollution mostly heavy metals. In this study a top-down analysis (a simple and intuitive spectral feature for detecting the presence of minerals, organic matter and pollutants in mixed soil samples) is applied. This method uses spectral activity (SA) detection in a structured hierarchical approach to quickly and, more importantly, correctly identify dominant spectral features. The applied method is adopted by multiple in-production tools including continuum removal normalization, guided by polynomial generalization, and spectral-likelihood algorithms: orthogonal subspace projection (OSP) and iterative spectral mixture analysis (ISMA) were compared to feature likelihood methods. A total of 70 soil samples were collected at different locations: in remnant area within the city (edge and core), on the borders of the neighborhoods (edge) and in the fringe zone and in 2 locations in the protected park. The park samples were taken in locations found more than 100m from roads or direct anthropogenic disturbances. The samples were collected outside the setback of the residential areas (edge), and the fringe samples were taken away from the edge, where construction debris or waste was no longer visible - approximately 18 m-50 m down the slopes. The samples were taken from the upper layer of the soils, after the course organic or trash residues were removed. A soil sample drill, 5 cm in diameter and 10 cm deep, was used collecting up to 100 ml sample caps. The samples were air-dried, sifted through a 2 mm sieve to remove large particles and rock fragments and ground to <200 nm samples for spectral analysis across 400-2500 nm and laboratory mid-IR analysis. A ratio between the spectral features of soils' aliphatic and aromatic groups and calcite or hydroxyls to estimate the total organic matter via method proposed by Dlapa et al., 2014; base on the ratio indices between aliphatic hydrocarbons (3000-2800cm-1) to calcite mineral (peak area at 875cm-1, central wave length) and between carboxyl aromatic groups (1800-1200cm-1) to calcite mineral, were calculated for soil total carbon estimation. Results of the proposed top-down unmixing method suggest that the analysis is made very fast due to the simplified hierarchy which avoids the high-learning curve associated with unmixing algorithms showed that the most abundant components found in the all the samples taken within city boundaries were organic matter. In the "organic matter" category, we summarized all forms of vegetation endmembers including coarse vegetation and organic carbon. The second component was concrete followed by plastic and bricks. We found traces of concrete in all the urban study samples, even samples taken as far as 150 m from the edge of patches. In the park soils, we found a low diversity of materials and only two identifications of anthropogenic substances. The results of the soils pH, measured electrometrically and the particle size distribution, measured by Laser diffraction, indicate there is no difference between the samples particle size distribution and the pH values of the samples but they are not significantly different from the expected, except for the OM percentage. The suggested method was very effective for tracing the man-made substances, we could find concrete and asphalt, plastic and synthetic polymers after they were assimilated, broken down and decomposed into soil particles. By the top-down unmixing method we did not limit the substances we characterize and so we could detect unexpected materials and contaminants.

KSC-08pd3754

NASA Image and Video Library

2008-11-18

CAPE CANAVERAL, Fla. – Workers at Launch Complex 17-B on Cape Canaveral Air Force Station in Florida place the large patch that describes the Kepler spacecraft mission to be launched on the Delta 2 rocket. The Kepler mission is specifically designed to survey our region of the Milky Way galaxy to discover hundreds of Earth-size and smaller planets in or near the habitable zone and determine how many of the billions of stars in our galaxy have such planets. Results from this mission will allow us to place our solar system within the continuum of planetary systems in the Galaxy. Photo credit: NASA/Jim Grossmann

The Mars Environmental Compatibility Assessment (MECA) Wet Chemistry Experiment on the Mars 2001 Lander

NASA Technical Reports Server (NTRS)

Grannan, S. M.; Meloy, T. P.; Hecht, H.; Anderson, M. S.; Buehler, M.; Frant, M.; Kounaves, S. P.; Manatt, K. S.; Pike, W. T.; Schubert, W.

1999-01-01

The Mars Environmental Compatibility Assessment (MECA) is an instrument suite that will fly on the Mars Surveyor 2001 Lander Spacecraft. MECA is sponsored by the Human Exploration and Development of Space (HEDS) program and will evaluate potential hazards that the dust and soil of Mars might present to astronauts and their equipment on a future human mission to Mars. Four elements constitute the integrated MECA payload: a microscopy station, patch plates, an electrometer, and the wet chemistry experiment (WCE). The WCE is the first application of electrochemical sensors to study soil chemistry on another planetary body, in addition to being the first measurement of soil/water solution properties on Mars. The chemical composition and properties of the watersoluble materials present in the Martian soil are of considerable interest to the planetary science community because characteristic salts are formed by the water-based weathering of rocks, the action of volcanic gases, and biological activity. Thus the characterization of water-soluble soil materials on Mars can provide information on the geochemical history of the planet surface. Additional information is contained in the original extended abstract.

Double-tagged fluorescent bacterial bioreporter for the study of polycyclic aromatic hydrocarbon diffusion and bioavailability.

PubMed

Tecon, Robin; Binggeli, Olivier; van der Meer, Jan R

2009-09-01

Bacterial degradation of polycyclic aromatic hydrocarbons (PAHs), ubiquitous contaminants from oil and coal, is typically limited by poor accessibility of the contaminant to the bacteria. In order to measure PAH availability in complex systems, we designed a number of diffusion-based assays with a double-tagged bacterial reporter strain Burkholderia sartisoli RP037-mChe. The reporter strain is capable of mineralizing phenanthrene (PHE) and induces the expression of enhanced green fluorescent protein (eGFP) as a function of the PAH flux to the cell. At the same time, it produces a second autofluorescent protein (mCherry) in constitutive manner. Quantitative epifluorescence imaging was deployed in order to record reporter signals as a function of PAH availability. The reporter strain expressed eGFP proportionally to dosages of naphthalene or PHE in batch liquid cultures. To detect PAH diffusion from solid materials the reporter cells were embedded in 2 cm-sized agarose gel patches, and fluorescence was recorded over time for both markers as a function of distance to the PAH source. eGFP fluorescence gradients measured on known amounts of naphthalene or PHE served as calibration for quantifying PAH availability from contaminated soils. To detect reporter gene expression at even smaller diffusion distances, we mixed and immobilized cells with contaminated soils in an agarose gel. eGFP fluorescence measurements confirmed gel patch diffusion results that exposure to 2-3 mg lampblack soil gave four times higher expression than to material contaminated with 10 or 1 (mg PHE) g(-1).

Mars Under the Microscope

NASA Technical Reports Server (NTRS)

2004-01-01

This magnified look at the martian soil near the Mars Exploration Rover Opportunity's landing site, Meridiani Planum, shows coarse grains sprinkled over a fine layer of sand. The image was captured by the rover's microscopic imager on the 10th day, or sol, of its mission. Scientists are intrigued by the spherical rocks, which can be formed by a variety of geologic processes, including cooling of molten lava droplets and accretion of concentric layers of material around a particle or 'seed.'

The examined patch of soil is 3 centimeters (1.2 inches) across. The circular grain in the lower left corner is approximately 3 millimeters (.12 inches) across, or about the size of a sunflower seed.

Take Your Class Outdoors.

ERIC Educational Resources Information Center

Shellenberger, Barbara R.

1981-01-01

Offers suggestions for designing outdoor activities to provide students with opportunities for exploring, observing, and discovering. Outlines several science activities for each of the following topics: trees, rocks, soil, insects, wild flowers, grasses, lichens, and clouds. (DS)

Deterioration of soil quality and pasture production linked to overgrazing in rangelands of Extremadura (SW Spain)

NASA Astrophysics Data System (ADS)

Pulido-Fernández, Manuel; Schnabel, Susanne; Francisco Lavado Contador, Joaquín; Lozano-Parra, Javier; González López, Francisco

2015-04-01

Soil degradation phenomena include water erosion and physical and biological processes have been already reported in rangelands of southwestern Spain. The increasing of the number of domestic animals since 1986 has been highlighted as one of the key causes. The main goal of this work is to analyze the effects of the excessive number of animals on soil quality and pasture production in privately-owned farms dedicated to extensive ranching. Soil properties, soil surface cover, erosion features, pasture production and composition, rainfall and land management variables such as livestock density were analyzed during a period of 3 years (2008-2011). The study was carried out in 22 fenced units belonging to 10 farms distributed throughout the Spanish region of Extremadura. The occurrence of bare soil patches, and consequently water erosion processes, as well as an increasing in the mean values of bulk density from 5 to 10 cm in depth were observed in the fenced units with animal stocking rates exceeding 1 AU ha-1 (AU: animal cattle equivalent unit). Some indications which may serve to confirm the negative effect of increased bulk density on pasture production and quality were also found.

Fire reinforces structure of pondcypress (Taxodium distichum var. imbricarium) domes in a wetland landscape

USGS Publications Warehouse

Watts, Adam C.; Kobziar, Leda N.; Snyder, James R.

2012-01-01

Fire periodically affects wetland forests, particularly in landscapes with extensive fire-prone uplands. Rare occurrence and difficulty of access have limited efforts to understand impacts of wildfires fires in wetlands. Following a 2009 wildfire, we measured tree mortality and structural changes in wetland forest patches. Centers of these circular landscape features experienced lower fire severity, although no continuous patch-size or edge effect was evident. Initial survival of the dominant tree, pondcypress (Taxodium distichum var. imbricarium), was high (>99%), but within one year of the fire approximately 23% of trees died. Delayed mortality was correlated with fire severity, but unrelated to other hypothesized factors such as patch size or edge distance. Tree diameter and soil elevation were important predictors of mortality, with smaller trees and those in areas with lower elevation more likely to die following severe fire. Depressional cypress forests typically exhibit increasing tree size towards their interiors, and differential mortality patterns were related to edge distance. These patterns result in the exaggeration of a dome-shaped profile. Our observations quantify roles of fire and hydrology in determining cypress mortality in these swamps, and imply the existence of feedbacks that maintain the characteristic shape of cypress domes.

Coupled local facilitation and global hydrologic inhibition drive landscape geometry in a patterned peatland

NASA Astrophysics Data System (ADS)

Acharya, S.; Kaplan, D. A.; Casey, S.; Cohen, M. J.; Jawitz, J. W.

2015-05-01

Self-organized landscape patterning can arise in response to multiple processes. Discriminating among alternative patterning mechanisms, particularly where experimental manipulations are untenable, requires process-based models. Previous modeling studies have attributed patterning in the Everglades (Florida, USA) to sediment redistribution and anisotropic soil hydraulic properties. In this work, we tested an alternate theory, the self-organizing-canal (SOC) hypothesis, by developing a cellular automata model that simulates pattern evolution via local positive feedbacks (i.e., facilitation) coupled with a global negative feedback based on hydrology. The model is forced by global hydroperiod that drives stochastic transitions between two patch types: ridge (higher elevation) and slough (lower elevation). We evaluated model performance using multiple criteria based on six statistical and geostatistical properties observed in reference portions of the Everglades landscape: patch density, patch anisotropy, semivariogram ranges, power-law scaling of ridge areas, perimeter area fractal dimension, and characteristic pattern wavelength. Model results showed strong statistical agreement with reference landscapes, but only when anisotropically acting local facilitation was coupled with hydrologic global feedback, for which several plausible mechanisms exist. Critically, the model correctly generated fractal landscapes that had no characteristic pattern wavelength, supporting the invocation of global rather than scale-specific negative feedbacks.

Coupled local facilitation and global hydrologic inhibition drive landscape geometry in a patterned peatland

NASA Astrophysics Data System (ADS)

Acharya, S.; Kaplan, D. A.; Casey, S.; Cohen, M. J.; Jawitz, J. W.

2015-01-01

Self-organized landscape patterning can arise in response to multiple processes. Discriminating among alternative patterning mechanisms, particularly where experimental manipulations are untenable, requires process-based models. Previous modeling studies have attributed patterning in the Everglades (Florida, USA) to sediment redistribution and anisotropic soil hydraulic properties. In this work, we tested an alternate theory, the self-organizing canal (SOC) hypothesis, by developing a cellular automata model that simulates pattern evolution via local positive feedbacks (i.e., facilitation) coupled with a global negative feedback based on hydrology. The model is forced by global hydroperiod that drives stochastic transitions between two patch types: ridge (higher elevation) and slough (lower elevation). We evaluated model performance using multiple criteria based on six statistical and geostatistical properties observed in reference portions of the Everglades landscape: patch density, patch anisotropy, semivariogram ranges, power-law scaling of ridge areas, perimeter area fractal dimension, and characteristic pattern wavelength. Model results showed strong statistical agreement with reference landscapes, but only when anisotropically acting local facilitation was coupled with hydrologic global feedback, for which several plausible mechanisms exist. Critically, the model correctly generated fractal landscapes that had no characteristic pattern wavelength, supporting the invocation of global rather than scale-specific negative feedbacks.

Classification of Maize and Weeds by Bayesian Networks

NASA Astrophysics Data System (ADS)

Chapron, Michel; Oprea, Alina; Sultana, Bogdan; Assemat, Louis

2007-11-01

Precision Agriculture is concerned with all sorts of within-field variability, spatially and temporally, that reduces the efficacy of agronomic practices applied in a uniform way all over the field. Because of these sources of heterogeneity, uniform management actions strongly reduce the efficiency of the resource input to the crop (i.e. fertilization, water) or for the agrochemicals use for pest control (i.e. herbicide). Moreover, this low efficacy means high environmental cost (pollution) and reduced economic return for the farmer. Weed plants are one of these sources of variability for the crop, as they occur in patches in the field. Detecting the location, size and internal density of these patches, along with identification of main weed species involved, open the way to a site-specific weed control strategy, where only patches of weeds would receive the appropriate herbicide (type and dose). Herein, an automatic recognition method of vegetal species is described. First, the pixels of soil and vegetation are classified in two classes, then the vegetation part of the input image is segmented from the distance image by using the watershed method and finally the leaves of the vegetation are partitioned in two parts maize and weeds thanks to the two Bayesian networks.

STS-57 OV-105's payload bay (PLB) with Earth observation of Namib Desert

NASA Technical Reports Server (NTRS)

1993-01-01

STS-57 Earth observation taken aboard Endeavour, Orbiter Vehicle (OV) 105, is of the coast of the Namib Desert. This northeast-looking view shows the distinctive yellow, parallel dunes of the Namib Sand Sea in the foreground under OV-105's tail. The largest harbor on the Atlantic coast is Walvis Bay. A small piece of south African territory surrounded by the newly independent country, Walvis Bay is Namibia's major port. On the dune-free flats directly inland from Walvis Bay, large reserves of near-surface uranium have been discovered. The world's largest open-pit uranium mine, the Rossing Mine, has attracted workers from all parts of Namibia. Of special interest for this mission is the unusual occurrence of blowing dust offshore (orange patch over the sea). In what was a mission dominated by episodes of blowing dust, this is another example showing how windy the Earth is at present. This large view from a higher-than-usual altitude includes the large oval patch of the Etosha dry lake n

The early bird gets the worm: foraging strategies of wild songbirds lead to the early discovery of food sources

PubMed Central

Farine, Damien R.; Lang, Stephen D. J.

2013-01-01

Animals need to manage the combined risks of predation and starvation in order to survive. Theoretical and empirical studies have shown that individuals can reduce predation risk by delaying feeding (and hence fat storage) until late afternoon. However, little is known about how individuals manage the opposing pressures of resource uncertainty and predation risks. We suggest that individuals should follow a two-part strategy: prioritizing the discovery of food early in the day and exploiting the best patch late in the day. Using automated data loggers, we tested whether a temporal component exists in the discovery of novel foraging locations by individuals in a mixed-species foraging guild. We found that food deployed in the morning was discovered significantly more often than food deployed in the afternoon. Based on the diurnal activity patterns in this population, overall rates of new arrivals were also significantly higher than expected in the morning and significantly lower than expected in the afternoon. These results align with our predictions of a shift from patch discovery to exploitation over the course of the day. PMID:24108676

[Spatial variation characteristics of surface soil water content, bulk density and saturated hydraulic conductivity on Karst slopes].

PubMed

Zhang, Chuan; Chen, Hong-Song; Zhang, Wei; Nie, Yun-Peng; Ye, Ying-Ying; Wang, Ke-Lin

2014-06-01

Surface soil water-physical properties play a decisive role in the dynamics of deep soil water. Knowledge of their spatial variation is helpful in understanding the processes of rainfall infiltration and runoff generation, which will contribute to the reasonable utilization of soil water resources in mountainous areas. Based on a grid sampling scheme (10 m x 10 m) and geostatistical methods, this paper aimed to study the spatial variability of surface (0-10 cm) soil water content, soil bulk density and saturated hydraulic conductivity on a typical shrub slope (90 m x 120 m, projected length) in Karst area of northwest Guangxi, southwest China. The results showed that the surface soil water content, bulk density and saturated hydraulic conductivity had different spatial dependence and spatial structure. Sample variogram of the soil water content was fitted well by Gaussian models with the nugget effect, while soil bulk density and saturated hydraulic conductivity were fitted well by exponential models with the nugget effect. Variability of soil water content showed strong spatial dependence, while the soil bulk density and saturated hydraulic conductivity showed moderate spatial dependence. The spatial ranges of the soil water content and saturated hydraulic conductivity were small, while that of the soil bulk density was much bigger. In general, the soil water content increased with the increase of altitude while it was opposite for the soil bulk densi- ty. However, the soil saturated hydraulic conductivity had a random distribution of large amounts of small patches, showing high spatial heterogeneity. Soil water content negatively (P < 0.01) correlated with the bulk density and saturated hydraulic conductivity, while there was no significant correlation between the soil bulk density and saturated hydraulic conductivity.

Evaluating the environmental parameters that determine aerobic biodegradation half-lives of pesticides in soil with a multivariable approach.

PubMed

Wang, Yuxin; Lai, Adelene; Latino, Diogo; Fenner, Kathrin; Helbling, Damian E

2018-06-14

Aerobic biodegradation half-lives (half-lives) are key parameters used to evaluate pesticide persistence in soil. However, half-life estimates for individual pesticides often span several orders of magnitude, reflecting the impact that various environmental or experimental parameters have on half-lives in soil. In this work, we collected literature-reported half-lives for eleven pesticides along with associated metadata describing the environmental or experimental conditions under which they were derived. We then developed a multivariable framework to discover relationships between the half-lives and associated metadata. We first compared data for the herbicide atrazine collected from 95 laboratory and 65 field studies. We discovered that atrazine application history and soil texture were the parameters that have the largest influence on the observed half-lives in both types of studies. We then extended the analysis to include ten additional pesticides with data collected exclusively from laboratory studies. We found that, when data were available, pesticide application history and biomass concentrations were always positively associated with half-lives. The relevance of other parameters varied among the pesticides, but in some cases the variability could be explained by the physicochemical properties of the pesticides. For example, we found that the relative significance of the organic carbon content of soil for determining half-lives depends on the relative solubility of the pesticide. Altogether, our analyses highlight the reciprocal influence of both environmental parameters and intrinsic physicochemical properties for determining half-lives in soil. Copyright © 2018 Elsevier Ltd. All rights reserved.

Process-Driven Ecological Modeling for Landscape Change Analysis

NASA Astrophysics Data System (ADS)

Altman, S.; Reif, M. K.; Swannack, T. M.

2013-12-01

Landscape pattern is an important driver in ecosystem dynamics and can control system-level functions such as nutrient cycling, connectivity, biodiversity and carbon sequestration. However, the links between process, pattern and function remain ambiguous. Understanding the quantitative relationship between ecological processes and landscape pattern across temporal and spatial scales is vital for successful management and implementation of ecosystem-level projects. We used remote sensing imagery to develop critical landscape metrics to understand the factors influencing landscape change. Our study area, a coastal area in southwest Florida, is highly dynamic with critically eroding beaches and a range of natural and developed land cover types. Hurricanes in 2004 and 2005 caused a breach along the coast of North Captiva Island that filled in by 2010. We used a time series of light detection and ranging (lidar) elevation data and hyperspectral imagery from 2006 and 2010 to determine land cover changes. Landscape level metrics used included: Largest Patch Index, Class Area, Area-weighted mean area, Clumpiness, Area-weighted Contiguity Index, Number of Patches, Percent of landcover, Area-weighted Shape. Our results showed 1) 27% increase in sand/soil class as the channel repaired itself and shoreline was reestablished, 2) 40% decrease in the mudflat class area due to conversion to sand/soil and water, 3) 30% increase in non-wetland vegetation class as a result of new vegetation around the repaired channel, and 4) the water class only slightly increased though there was a marked increase in the patch size area. Thus, the smaller channels disappeared with the infilling of the channel, leaving much larger, less complex patches behind the breach. Our analysis demonstrated that quantification of landscape pattern is critical to linking patterns to ecological processes and understanding how both affect landscape change. Our proof of concept indicated that ecological processes can correlate to landscape pattern and that ecosystem function changes significantly as pattern changes. However, the number of links between landscape metrics and ecological processes are highly variable. Extensively studied processes such as biodiversity can be linked to numerous landscape metrics. In contrast, correlations between sediment cycling and landscape pattern have only been evaluated for a limited number of metrics. We are incorporating these data into a relational database linking landscape and ecological patterns, processes and metrics. The database will be used to parameterize site-specific landscape evolution models projecting how landscape pattern will change as a result of future ecosystem restoration projects. The model is a spatially-explicit, grid-based model that projects changes in community composition based on changes in soil elevations. To capture scalar differences in landscape change, local and regional landscape metrics are analyzed at each time step and correlated with ecological processes to determine how ecosystem function changes with scale over time.

Soil redistribution and nutrient delivery in a Mediterranean rain-fed agro-ecosystem with different crops and management: environmental and economic aspects

NASA Astrophysics Data System (ADS)

López-Vicente, Manuel; Álvarez, Sara

2017-04-01

Mediterranean agro-ecosystems are characterised by fragmented fields and patched vegetation. This shape governs the spatial patterns of water, soil and nutrient redistribution. Rainfall parameters, human infrastructures, crop management, support practices, and land use changes (set aside crops, land abandonment) control the magnitude of these processes. Under rain-fed water supply conditions, runoff generation and soil water content are two important factors in determining crop yield. Soil erosion and nutrient delivery are two of the factors which limit crop yield and thus, the gross earning of the landowner. In hilly landscapes, farmers usually supply extra soil to fill in the ephemeral gullies, and nutrient replenishment with fertilizers is a common practice. The aim of this study is to evaluate the environmental (runoff yield, soil erosion and nutrient delivery) and economic (replenishment of soil and nutrient losses with new soil and fertilizers) consequences of different conventional and conservative practices (fallow/crop rotation, cover crops, land abandonment, buffer strips) in a Mediterranean rain-fed agro-ecosystem (27 ha) with vineyards, cereal crops, cultivated and abandoned olive orchards, several trails and patches of natural vegetation. The five winter cereal fields (wheat and barley) follow fallow/crop rotation. The four vineyards are devoted to the Garnacha variety: one planted in 2007 with white wine grapes, and three planted in 2008 with red wine grapes. The inter-crop strips are managed with a mixture of plant species as cover crop (CC), including: i) spontaneous vegetation, and ii) plantation of common sainfoin (Onobrychis viciifolia). The maintenance of the CC includes one mowing pass at the end of spring, between May and June. The appearance and development of ephemeral gullies and the deposition of soil at the bottom of the hillslope are two of the main concerns of the landowners. In some places, the accumulation of soil complicates grape harvest operations with machinery, forcing manual labour. A total of 222 soil samples were collected in 74 points, and some physical (coarse fragments, effective volume, bulk density, texture, infiltration, etc.) and chemical (soil organic carbon - SOC, total nitrogen, phosphorous and potassium) parameters analysed. The highest values of SOC and TN were found in the forestry (4.64% and 0.198%) and abandoned soils (2.96% and 0.132%), whereas the highest values of TP appeared in the cereal, olive and vineyards (458.4, 458.0 and 440.3 mg / kg P). The highest content of TK appeared in the vineyards (1979.1 mg / kg K), especially in the grapevine strips (2188.3 mg / kg K), due to the fertilizer supply. In order to assess the water, soil and nutrient budgets, four buried sediment traps were installed near the bottom and before reaching the depositional-prone area. The upslope contributing areas of the traps are not nested. Monitoring the magnitude of runoff and sediment yield and the chemical composition of the collected samples allowed calculating the economic cost of water, soil and nutrient losses. The results of this study have implications for other rain-fed productive agro-ecosystems as well as where conservative practices may reduce the economic cost of farmland management.

Shrubs as ecosystem engineers across an environmental gradient: effects on species richness and exotic plant invasion.

PubMed

Kleinhesselink, Andrew R; Magnoli, Susan M; Cushman, J Hall

2014-08-01

Ecosystem-engineering plants modify the physical environment and can increase species diversity and exotic species invasion. At the individual level, the effects of ecosystem engineers on other plants often become more positive in stressful environments. In this study, we investigated whether the community-level effects of ecosystem engineers also become stronger in more stressful environments. Using comparative and experimental approaches, we assessed the ability of a native shrub (Ericameria ericoides) to act as an ecosystem engineer across a stress gradient in a coastal dune in northern California, USA. We found increased coarse organic matter and lower wind speeds within shrub patches. Growth of a dominant invasive grass (Bromus diandrus) was facilitated both by aboveground shrub biomass and by growing in soil taken from shrub patches. Experimental removal of shrubs negatively affected species most associated with shrubs and positively affected species most often found outside of shrubs. Counter to the stress-gradient hypothesis, the effects of shrubs on the physical environment and individual plant growth did not increase across the established stress gradient at this site. At the community level, shrub patches increased beta diversity, and contained greater rarified richness and exotic plant cover than shrub-free patches. Shrub effects on rarified richness increased with environmental stress, but effects on exotic cover and beta diversity did not. Our study provides evidence for the community-level effects of shrubs as ecosystem engineers in this system, but shows that these effects do not necessarily become stronger in more stressful environments.

Intensive soil organic carbon losses by degradation of alpine Kobresia pasture on the Tibetan Plateau

NASA Astrophysics Data System (ADS)

Schleuss, Per-Marten; Heitkamp, Felix; Seeber, Elke; Spielvogel, Sandra; Miehe, Georg; Guggenberger, Georg; Kuzyakov, Yakov

2015-04-01

Kobresia grasslands of the Tibetan Plateau cover an area of ca. 450,000 km2. They are of high global and regional importance as they store large amounts of carbon (C) and nitrogen (N) and provide food for grazing animals. However, intensive grassland degradation in recent decades destroyed mainly the upper root-mat/soil horizon. This has dramatic consequences for SOC storage against the background of climate change and further grazing pressure. We investigated the impact of pasture degradation on SOC storage and hypothesized that SOC stocks strongly decreased due to a reduction of C-input by roots as consequence of vegetation cover loss by overgrazing, SOM decomposition and soil erosion. We selected a sequence of six degradation stages (DS1-6). As initial trigger of grassland degradation, the high grazing pressure reduces the ability of Kobresia pastures to recover from disturbances (e.g. by freezing and drying events, herbivory, trampling). Once the root mats are destroyed, the occurring root-mat cracks increase due to soil erosion, SOC decomposition and trampling activities of livestock. The SOC stocks and contents decreased along the degradation sequence from intact to highly disturbed stages. Carbon stocks declined from intact Kobresia root mats (DS1) to bare soil patches (DS6) by about 70%. The thickness of the upper soil horizons strongly declined from DS1 to DS6. Considering the bare soil patches (DS6) on average 10 cm of the most fertile topsoil were removed. This clearly suggests that soil erosion strongly contributed to SOC losses, especially from topsoil with highest SOC contents. A strong decrease of the vegetation cover (mainly K. pygmaea) demonstrated that soil degradation also resulted in die-back of K. pygmaea. Consequently, root biomass decreased along the degradation sequence (DS1-2 > DS3-4 > DS5-6), indicating lower belowground C input from roots. We found decreasing δ13C values with increasing degradation stages within the upper 20 cm of soil. Higher δ13C values were found for intact root mats (DS1), whereas lowest δ13C signatures occurred for the highly degraded stages (DS5-6). This observation seems to be unusual, because δ13C values are supposed to increase with increasing decomposition. However, the δ13C signatures agreed well with lignin contents, which increased along the degradation sequence. Since lignin is 13C depleted, the δ13C shift clearly indicates SOM decomposition and relative enrichment of lignin components. Using root biomass as indicator for C- input and δ13C values for SOM decomposition, we could explain 70% of decreasing SOC contents using a multiple linear regression model. We conclude that grassland and soil degradation led to large SOC loss due an absence of root C-input, SOM decomposition and soil erosion.

Mapping and predictive variations of soil bacterial richness across France

PubMed Central

Dequietd, Samuel; Saby, Nicolas P. A.; Lelièvre, Mélanie; Nowak, Virginie; Tripied, Julie; Régnier, Tiffanie; Jolivet, Claudy; Arrouays, Dominique; Wincker, Patrick; Cruaud, Corinne; Karimi, Battle; Bispo, Antonio; Maron, Pierre Alain; Chemidlin Prévost-Bouré, Nicolas; Ranjard, Lionel

2017-01-01

Although numerous studies have demonstrated the key role of bacterial diversity in soil functions and ecosystem services, little is known about the variations and determinants of such diversity on a nationwide scale. The overall objectives of this study were i) to describe the bacterial taxonomic richness variations across France, ii) to identify the ecological processes (i.e. selection by the environment and dispersal limitation) influencing this distribution, and iii) to develop a statistical predictive model of soil bacterial richness. We used the French Soil Quality Monitoring Network (RMQS), which covers all of France with 2,173 sites. The soil bacterial richness (i.e. OTU number) was determined by pyrosequencing 16S rRNA genes and related to the soil characteristics, climatic conditions, geomorphology, land use and space. Mapping of bacterial richness revealed a heterogeneous spatial distribution, structured into patches of about 111km, where the main drivers were the soil physico-chemical properties (18% of explained variance), the spatial descriptors (5.25%, 1.89% and 1.02% for the fine, medium and coarse scales, respectively), and the land use (1.4%). Based on these drivers, a predictive model was developed, which allows a good prediction of the bacterial richness (R2adj of 0.56) and provides a reference value for a given pedoclimatic condition. PMID:29059218

Mapping and determinism of soil microbial community distribution across an agricultural landscape

PubMed Central

Constancias, Florentin; Terrat, Sébastien; Saby, Nicolas P A; Horrigue, Walid; Villerd, Jean; Guillemin, Jean-Philippe; Biju-Duval, Luc; Nowak, Virginie; Dequiedt, Samuel; Ranjard, Lionel; Chemidlin Prévost-Bouré, Nicolas

2015-01-01

Despite the relevance of landscape, regarding the spatial patterning of microbial communities and the relative influence of environmental parameters versus human activities, few investigations have been conducted at this scale. Here, we used a systematic grid to characterize the distribution of soil microbial communities at 278 sites across a monitored agricultural landscape of 13 km². Molecular microbial biomass was estimated by soil DNA recovery and bacterial diversity by 16S rRNA gene pyrosequencing. Geostatistics provided the first maps of microbial community at this scale and revealed a heterogeneous but spatially structured distribution of microbial biomass and diversity with patches of several hundreds of meters. Variance partitioning revealed that both microbial abundance and bacterial diversity distribution were highly dependent of soil properties and land use (total variance explained ranged between 55% and 78%). Microbial biomass and bacterial richness distributions were mainly explained by soil pH and texture whereas bacterial evenness distribution was mainly related to land management. Bacterial diversity (richness, evenness, and Shannon index) was positively influenced by cropping intensity and especially by soil tillage, resulting in spots of low microbial diversity in soils under forest management. Spatial descriptors also explained a small but significant portion of the microbial distribution suggesting that landscape configuration also shapes microbial biomass and bacterial diversity. PMID:25833770

Disease Suppressive Soils: New Insights from the Soil Microbiome.

PubMed

Schlatter, Daniel; Kinkel, Linda; Thomashow, Linda; Weller, David; Paulitz, Timothy

2017-11-01

Soils suppressive to soilborne pathogens have been identified worldwide for almost 60 years and attributed mainly to suppressive or antagonistic microorganisms. Rather than identifying, testing and applying potential biocontrol agents in an inundative fashion, research into suppressive soils has attempted to understand how indigenous microbiomes can reduce disease, even in the presence of the pathogen, susceptible host, and favorable environment. Recent advances in next-generation sequencing of microbiomes have provided new tools to reexamine and further characterize the nature of these soils. Two general types of suppression have been described: specific and general suppression, and theories have been developed around these two models. In this review, we will present three examples of currently-studied model systems with features representative of specific and general suppressiveness: suppression to take-all (Gaeumannomyces graminis var. tritici), Rhizoctonia bare patch of wheat (Rhizoctonia solani AG-8), and Streptomyces. To compare and contrast the two models of general versus specific suppression, we propose a number of hypotheses about the nature and ecology of microbial populations and communities of suppressive soils. We outline the potential and limitations of new molecular techniques that can provide novel ways of testing these hypotheses. Finally, we consider how this greater understanding of the phytobiome can facilitate sustainable disease management in agriculture by harnessing the potential of indigenous soil microbes.

Mapping and predictive variations of soil bacterial richness across France.

PubMed

Terrat, Sébastien; Horrigue, Walid; Dequiedt, Samuel; Saby, Nicolas P A; Lelièvre, Mélanie; Nowak, Virginie; Tripied, Julie; Régnier, Tiffanie; Jolivet, Claudy; Arrouays, Dominique; Wincker, Patrick; Cruaud, Corinne; Karimi, Battle; Bispo, Antonio; Maron, Pierre Alain; Chemidlin Prévost-Bouré, Nicolas; Ranjard, Lionel

2017-01-01

Although numerous studies have demonstrated the key role of bacterial diversity in soil functions and ecosystem services, little is known about the variations and determinants of such diversity on a nationwide scale. The overall objectives of this study were i) to describe the bacterial taxonomic richness variations across France, ii) to identify the ecological processes (i.e. selection by the environment and dispersal limitation) influencing this distribution, and iii) to develop a statistical predictive model of soil bacterial richness. We used the French Soil Quality Monitoring Network (RMQS), which covers all of France with 2,173 sites. The soil bacterial richness (i.e. OTU number) was determined by pyrosequencing 16S rRNA genes and related to the soil characteristics, climatic conditions, geomorphology, land use and space. Mapping of bacterial richness revealed a heterogeneous spatial distribution, structured into patches of about 111km, where the main drivers were the soil physico-chemical properties (18% of explained variance), the spatial descriptors (5.25%, 1.89% and 1.02% for the fine, medium and coarse scales, respectively), and the land use (1.4%). Based on these drivers, a predictive model was developed, which allows a good prediction of the bacterial richness (R2adj of 0.56) and provides a reference value for a given pedoclimatic condition.

Regional stratigraphy and geologic history of Mare Crisium

NASA Technical Reports Server (NTRS)

Head, J. W., III; Adams, J. B.; Mccord, T. B.; Pieters, C.; Zisk, S.

1978-01-01

Remote sensing and Luna 24 sample data are used to develop a summary of the regional stratigraphy and geologic history of Mare Crisium. Laboratory spectra of Luna 24 samples, telescopic reflectance spectra in the 0.3 to 1.1 micron range and orbital X-ray data have identified three major basalt groups in the region. Group I soil is derived from iron- and magnesium-rich titaniferous basalts and was apparently emplaced over the majority of the basin, however is presently exposed as a shelf in the southwest part. Group II soils, derived from very low titanium ferrobasalts, were emplaced in two stages subsequent to Group I emplacement and now appear as part of the outer shelf and topographic annulus. Subsidence of the basin interior preceded and continued after the emplacement of the third basalt group, a soil derived from a low titanium ferrobasalt. The Luna 24 site is found to be within a patch of Group II material.

Direct Exoplanet Detection with Binary Differential Imaging

NASA Astrophysics Data System (ADS)

Rodigas, Timothy J.; Weinberger, Alycia; Mamajek, Eric E.; Males, Jared R.; Close, Laird M.; Morzinski, Katie; Hinz, Philip M.; Kaib, Nathan

2015-10-01

Binaries are typically excluded from direct imaging exoplanet surveys. However, the recent findings of Kepler and radial velocity programs show that planets can and do form in binary systems. Here, we suggest that visual binaries offer unique advantages for direct imaging. We show that Binary Differential Imaging (BDI), whereby two stars are imaged simultaneously at the same wavelength within the isoplanatic patch at a high Strehl ratio, offers improved point spread function (PSF) subtraction that can result in increased sensitivity to planets close to each star. We demonstrate this by observing a young visual binary separated by 4″ with MagAO/Clio-2 at 3.9 μm, where the Strehl ratio is high, the isoplanatic patch is large, and giant planets are bright. Comparing BDI to angular differential imaging (ADI), we find that BDI’s 5σ contrast is ˜0.5 mag better than ADI’s within ˜1″ for the particular binary we observed. Because planets typically reside close to their host stars, BDI is a promising technique for discovering exoplanets in stellar systems that are often ignored. BDI is also 2-4× more efficient than ADI and classical reference PSF subtraction, since planets can be detected around both the target and PSF reference simultaneously. We are currently exploiting this technique in a new MagAO survey for giant planets in 140 young nearby visual binaries. BDI on a space-based telescope would not be limited by isoplanatism effects and would therefore be an even more powerful tool for imaging and discovering planets. This paper includes data obtained at the 6.5 m Magellan Telescopes located at Las Campanas Observatory, Chile.

Spatial distribution patterns of soil mite communities and their relationships with edaphic factors in a 30-year tillage cornfield in northeast China.

PubMed

Liu, Jie; Gao, Meixiang; Liu, Jinwen; Guo, Yuxi; Liu, Dong; Zhu, Xinyu; Wu, Donghui

2018-01-01

Spatial distribution is an important topic in community ecology and a key to understanding the structure and dynamics of populations and communities. However, the available information related to the spatial patterns of soil mite communities in long-term tillage agroecosystems remains insufficient. In this study, we examined the spatial patterns of soil mite communities to explain the spatial relationships between soil mite communities and soil parameters. Soil fauna were sampled three times (August, September and October 2015) at 121 locations arranged regularly within a 400 m × 400 m monitoring plot. Additionally, we estimated the physical and chemical parameters of the same sampling locations. The distribution patterns of the soil mite community and the edaphic parameters were analyzed using a range of geostatistical tools. Moran's I coefficient showed that, during each sampling period, the total abundance of the soil mite communities and the abundance of the dominant mite populations were spatially autocorrelated. The soil mite communities demonstrated clear patchy distribution patterns within the study plot. These patterns were sampling period-specific. Cross-semivariograms showed both negative and positive cross-correlations between soil mite communities and environmental factors. Mantel tests showed a significant and positive relationship between soil mite community and soil organic matter and soil pH only in August. This study demonstrated that in the cornfield, the soil mite distribution exhibited strong or moderate spatial dependence, and the mites formed patches with sizes less than one hundred meters. In addition, in this long-term tillage agroecosystem, soil factors had less influence on the observed pattern of soil mite communities. Further experiments that take into account human activity and spatial factors should be performed to study the factors that drive the spatial distribution of soil microarthropods.

Habitat Fragmentation can Modulate Drought Effects on the Plant-soil-microbial System in Mediterranean Holm Oak (Quercus ilex) Forests.

PubMed

Flores-Rentería, Dulce; Curiel Yuste, Jorge; Rincón, Ana; Brearley, Francis Q; García-Gil, Juan Carlos; Valladares, Fernando

2015-05-01

Ecological transformations derived from habitat fragmentation have led to increased threats to above-ground biodiversity. However, the impacts of forest fragmentation on soils and their microbial communities are not well understood. We examined the effects of contrasting fragment sizes on the structure and functioning of soil microbial communities from holm oak forest patches in two bioclimatically different regions of Spain. We used a microcosm approach to simulate the annual summer drought cycle and first autumn rainfall (rewetting), evaluating the functional response of a plant-soil-microbial system. Forest fragment size had a significant effect on physicochemical characteristics and microbial functioning of soils, although the diversity and structure of microbial communities were not affected. The response of our plant-soil-microbial systems to drought was strongly modulated by the bioclimatic conditions and the fragment size from where the soils were obtained. Decreasing fragment size modulated the effects of drought by improving local environmental conditions with higher water and nutrient availability. However, this modulation was stronger for plant-soil-microbial systems built with soils from the northern region (colder and wetter) than for those built with soils from the southern region (warmer and drier) suggesting that the responsiveness of the soil-plant-microbial system to habitat fragmentation was strongly dependent on both the physicochemical characteristics of soils and the historical adaptation of soil microbial communities to specific bioclimatic conditions. This interaction challenges our understanding of future global change scenarios in Mediterranean ecosystems involving drier conditions and increased frequency of forest fragmentation.

Root decisions.

PubMed

Hodge, Angela

2009-06-01

Root systems have recognizable developmental plans when grown in solution or agar; however, these plans often must be modified to cope with the prevailing conditions in the soil environment such as the avoidance of obstacles and the exploitation of nutrient-rich patches or water zones. The modular structure of roots enables them to respond to their environment, and roots are very adaptive at modifying growth throughout the root system to concentrate their efforts in the areas that are the most profitable. Roots also form associations with microorganisms as a strategy to enhance resource capture. However, while the responses of roots in nutrient patches are well-recognized, overall 'rules of response' and variation in strategy among plant species that can be applied in a number of different environments are still lacking. Finally, there is increasing evidence that root-root interactions are much more sophisticated than previously thought, and the evidence for roots to identify self from non-self roots will be briefly discussed.

Churned-Up Rocky Debris and Dust (True Color)

NASA Technical Reports Server (NTRS)

2005-01-01

NASA's Mars Exploration Rover Spirit has been analyzing sulfur-rich rocks and surface materials in the 'Columbia Hills' in Gusev Crater on Mars. This image shows rocky debris and dust, which planetary scientists call 'regolith' or 'soil,' that has been churned up by the rover wheels. This 40-centimeter-wide (16-inch-wide) patch of churned-up dirt, nicknamed 'Paso Robles,' contains brighter patches measured to be high in sulfur by Spirit's alpha particle X-ray Spectrometer. Spirit's panoramic camera took this image on martian day, or sol, 400 (Feb. 16, 2005). The image represents the panoramic camera team's best current attempt at generating a true color view of what this scene would look like if viewed by a human on Mars. The image was generated from a combination of six calibrated, left-eye images acquired through filters ranging from 430-nanometer to 750-nanometer wavelengths.

Sensor-Based Assessment of Soil Salinity during the First Years of Transition from Flood to Sprinkler Irrigation

PubMed Central

Herrero, Juan; Betrán, Jesús A.; Ritchie, Glen

2018-01-01

A key issue for agriculture in irrigated arid lands is the control of soil salinity, and this is one of the goals for irrigated districts when changing from flood to sprinkling irrigation. We combined soil sampling, proximal electromagnetic induction, and satellite data to appraise how soil salinity and its distribution along a previously flood-irrigated field evolved after its transformation to sprinkling. We also show that the relationship between NDVI (normalized difference vegetation index) and ECe (electrical conductivity of the soil saturation extracts) mimics the production function between yield and soil salinity. Under sprinkling, the field had a double crop of barley and then sunflower in 2009 and 2011. In both years, about 50% of the soil of the entire studied field—45 ha—had ECe < 8 dS m−1, i.e., allowing barley cultivation, while the percent of surface having ECe ≥ 16 dS m−1 increased from 8.4% in 2009 to 13.7% in 2011. Our methodology may help monitor the soil salinity oscillations associated with irrigation management. After quantifying and mapping the soil salinity in 2009 and 2011, we show that barley was stunted in places of the field where salinity was higher. Additionally, the areas of salinity persisted after the subsequent alfalfa cropping in 2013. Application of differential doses of water to the saline patches is a viable method to optimize irrigation water distribution and lessen soil salinity in sprinkler-irrigated agriculture. PMID:29462981

Sensor-Based Assessment of Soil Salinity during the First Years of Transition from Flood to Sprinkler Irrigation.

PubMed

Casterad, Mª Auxiliadora; Herrero, Juan; Betrán, Jesús A; Ritchie, Glen

2018-02-17

A key issue for agriculture in irrigated arid lands is the control of soil salinity, and this is one of the goals for irrigated districts when changing from flood to sprinkling irrigation. We combined soil sampling, proximal electromagnetic induction, and satellite data to appraise how soil salinity and its distribution along a previously flood-irrigated field evolved after its transformation to sprinkling. We also show that the relationship between NDVI (normalized difference vegetation index) and ECe (electrical conductivity of the soil saturation extracts) mimics the production function between yield and soil salinity. Under sprinkling, the field had a double crop of barley and then sunflower in 2009 and 2011. In both years, about 50% of the soil of the entire studied field-45 ha-had ECe < 8 dS m-1, i.e., allowing barley cultivation, while the percent of surface having ECe ≥ 16 dS m-1 increased from 8.4% in 2009 to 13.7% in 2011. Our methodology may help monitor the soil salinity oscillations associated with irrigation management. After quantifying and mapping the soil salinity in 2009 and 2011, we show that barley was stunted in places of the field where salinity was higher. Additionally, the areas of salinity persisted after the subsequent alfalfa cropping in 2013. Application of differential doses of water to the saline patches is a viable method to optimize irrigation water distribution and lessen soil salinity in sprinkler-irrigated agriculture.

Systematic Approach to Identifying Deeply Buried Archeological Deposits

DOT National Transportation Integrated Search

2018-02-01

Traditional methods used to discover archeological sites include pedestrian surface surveys and relatively shallow hand-dug shovel or soil core testing. While these methods are appropriate for locating surface and near-surface sites on ridges, hillto...

Spirit Near 'Stapledon' on Sol 1802 (Stereo)

NASA Technical Reports Server (NTRS)

2009-01-01

[figure removed for brevity, see original site] Left-eye view of a color stereo pair for PIA11781 [figure removed for brevity, see original site] Right-eye view of a color stereo pair for PIA11781

NASA Mars Exploration Rover Spirit used its navigation camera for the images assembled into this stereo, full-circle view of the rover's surroundings during the 1,802nd Martian day, or sol, (January 26, 2009) of Spirit's mission on the surface of Mars. South is at the center; north is at both ends.

This view combines images from the left-eye and right-eye sides of the navigation camera. It appears three-dimensional when viewed through red-blue glasses with the red lens on the left.

Spirit had driven down off the low plateau called 'Home Plate' on Sol 1782 (January 6, 2009) after spending 12 months on a north-facing slope on the northern edge of Home Plate. The position on the slope (at about the 9-o'clock position in this view) tilted Spirit's solar panels toward the sun, enabling the rover to generate enough electricity to survive its third Martian winter. Tracks at about the 11-o'clock position of this panorama can be seen leading back to that 'Winter Haven 3' site from the Sol 1802 position about 10 meters (33 feet) away. For scale, the distance between the parallel wheel tracks is about one meter (40 inches).

Where the receding tracks bend to the left, a circular pattern resulted from Spirit turning in place at a soil target informally named 'Stapledon' after William Olaf Stapledon, a British philosopher and science-fiction author who lived from 1886 to 1950. Scientists on the rover team suspected that the soil in that area might have a high concentration of silica, resembling a high-silica soil patch discovered east of Home Plate in 2007. Bright material visible in the track furthest to the right was examined with Spirit's alpha partical X-ray spectrometer and found, indeed, to be rich in silica.

The team laid plans to drive Spirit from this Sol 1802 location back up onto Home Plate, then southward for the rover's summer field season.

This view is presented as a cylindrical-perspective projection with geometric seam correction.

Patterns of woody plant invasion in an Argentinean coastal grassland

NASA Astrophysics Data System (ADS)

Alberio, Constanza; Comparatore, Viviana

2014-01-01

Coastal dune grasslands are fragile ecosystems that have historically been subjected to various types of uses and human activities. In Buenos Aires Province (Argentina), these areas are frequently afforested for urban and touristic development. The introduction and subsequent spread of exotic tree species is one of the main threats to conservation of natural grasslands as invasive trees strongly transform their structure and composition. The aim of this study was to identify patterns of woody plant invasion comparing plant communities and environmental variables between invaded and non-invaded areas surrounding the coastal village of Mar Azul, Argentina. Coastal grasslands in this area are being invaded by Populus alba (white poplar) and Acacia longifolia (coast wattle). The height of the saplings and the richness of the accompanying vegetation were evaluated in relation to the distance from the edge of the mature tree patches. Also, the cover, richness and diversity of all species in the invaded and non-invaded areas were measured, as well as soil pH, temperature and particle size. Negative correlations were found between the height of the saplings and distance to mature tree patches in all areas. The richness of the accompanying vegetation was negatively and positively correlated with the distance from the poplar and acacia area, respectively. The most abundant native species was Cortaderia selloana. Less cover, richness and diversity of native plant species and greater soil particle size were found in invaded areas, where the proportion of bare soil was higher. Also, a higher proportion of leaf litter in the invaded areas was registered. The results emphasize the invasive capacity of P. alba and A. longifolia advancing on the native communities and reducing their richness. Knowledge of the impact of invasive woody plants in coastal grasslands is important to design active management strategies for conservation purposes.

History Leaves Salts Behind

NASA Technical Reports Server (NTRS)

2004-01-01

These plots, or spectra, show that a rock dubbed 'McKittrick' near the Mars Exploration Rover Opportunity's landing site at Meridiani Planum, Mars, has higher concentrations of sulfur and bromine than a nearby patch of soil nicknamed 'Tarmac.' These data were taken by Opportunity's alpha particle X-ray spectrometer, which uses curium-244 to assess the elemental composition of rocks and soil. Only portions of the targets' full spectra are shown to highlight the significant differences in elemental concentrations between 'McKittrick' and 'Tarmac.' Intensities are plotted on a logarithmic scale.

A nearby rock named Guadalupe similarly has extremely high concentrations of sulfur, but very little bromine. This 'element fractionation' typically occurs when a watery brine slowly evaporates and various salt compounds are precipitated in sequence.

KSC-08pd3755

NASA Image and Video Library

2008-11-18

CAPE CANAVERAL, Fla. – Workers at Launch Complex 17-B on Cape Canaveral Air Force Station in Florida place sections of the large patch that describes the Kepler spacecraft mission to be launched by the Delta 2 rocket. The Kepler mission is specifically designed to survey our region of the Milky Way galaxy to discover hundreds of Earth-size and smaller planets in or near the habitable zone and determine how many of the billions of stars in our galaxy have such planets. Results from this mission will allow us to place our solar system within the continuum of planetary systems in the Galaxy. Photo credit: NASA/Jim Grossmann

KSC-08pd3756

NASA Image and Video Library

2008-11-18

CAPE CANAVERAL, Fla. – Workers at Launch Complex 17-B on Cape Canaveral Air Force Station in Florida place the large patch on the Delta 2 rocket that describes the Kepler spacecraft mission to be launched by the rocket. The Kepler mission is specifically designed to survey our region of the Milky Way galaxy to discover hundreds of Earth-size and smaller planets in or near the habitable zone and determine how many of the billions of stars in our galaxy have such planets. Results from this mission will allow us to place our solar system within the continuum of planetary systems in the Galaxy. Photo credit: NASA/Jim Grossmann

Biological Dimensions of Crack Morphology in Dryland Soils

NASA Astrophysics Data System (ADS)

DeCarlo, K. F.; Spiegel, M.; Caylor, K. K.

2014-12-01

Macropores and cracks have an integral role in soil hydrology, and the physicochemical factors that induce them have been the subject of much laboratory research. How these processes translate to field soils, however, is often obfuscated by the biological elements present that complicate its formation and dynamics. In this study, we investigated the biological influence of herbivores and vegetation on 3D crack morphology in a dryland swelling soil (black cotton/vertisol). Fieldwork was conducted at and near the Kenya Long-Term Exclosure Experiment (KLEE) plots in Mpala, central Kenya, where three different soil regions were identified: highly vegetated areas, animal trails, and termite mounds. Crack networks were physically characterized by pouring liquid resin into the soil and excavating them when dry, after which they were imaged and quantified using medical magnetic resonance imaging (MRI). Cracking intensity of each cast was corrected via soil moisture and bulk density measurements at 5 cm intervals over 30 cm. 3D characterization of the soil system shows that mechanical compaction is a major influence in the formation of extensive and deep cracks in animal trails, with megaherbivores (e.g. elephants) inducing the most extreme cracks. Bioturbation is seen as a major influence in the formation of shallower cracks in termite mounds, as termites loosen and aerate the soil and reduce the soil's cohesive properties. Highly vegetated soils show a large degree of variability: small, disconnected soil patches induced by vegetative cover and a larger root network results in smaller and shallower cracks, but full vegetative cover induces deep and irregular cracks, possibly due to diverted rainfall. Our results highlight the intricate connections between the biology and physics that dictate soil processes in a complex soil system at the field scale.

An Asia-specific source of dechlorane plus: concentration, isomer profiles, and other related compounds.

PubMed

Wang, De-Gao; Yang, Meng; Qi, Hong; Sverko, Ed; Ma, Wan-Li; Li, Yi-Fan; Alaee, Mehran; Reiner, Eric J; Shen, Li

2010-09-01

The distribution of dechloranes, a group of chlorinated flame retardants, were investigated in air, soil, and sediment around a newly discovered Dechlorane Plus (DP) production facility in China (Anpon). To date, the only known DP manufacturing plant is located in Niagara Falls, NY (OxyChem). Dechloranes including DP, Dechlorane (Mirex), and the recently discovered Dechlorane 602 (Dec 602) were detected in air, soil, and sediment, while Dechlorane 603 and Dechlorane 604 were below detection limit in all matrices. DP air concentrations near the facility ranged from 7737 to 26 734 pg m(-3), the greatest reported thus far. Soil concentrations in the same area for DP, Dechlorane, and Dec 602 were 1490+/-3580 ng g(-1), 81.6+/-96.5 ng g(-1), and 7.24+/-13.2 ng g(-1) dry weight, respectively. Interestingly, lower concentrations of DP (4.93+/-4.34 ng g(-1)), Dechlorane (30.2+/-19.9 ng g(-1)), and Dec 602 (2.14+/-2.23 ng g(-1)) were found in sediment from a nearby canal. Spatial trends of Dechlorane and Dec 602 in soil were similar to DP, implying that the DP manufacturing plant may also be a source of these other flame retardants. DP soil concentrations surrounding the facility decreased by an order of magnitude within 7.5 km. The syn-DP fractional abundance (fsyn) value (0.40) for the commercial DP product manufactured at Anpon was slightly higher than that (0.20-0.36) produced by OxyChem. The fsyn value in most air samples was largely similar to the Chinese commercial DP mixture, while most soil and sediment abundances were lower, suggesting a stereoselective depletion of syn-DP.

Numerical modeling of consolidation processes in hydraulically deposited soils

NASA Astrophysics Data System (ADS)

Brink, Nicholas Robert

Hydraulically deposited soils are encountered in many common engineering applications including mine tailing and geotextile tube fills, though the consolidation process for such soils is highly nonlinear and requires the use of advanced numerical techniques to provide accurate predictions. Several commercially available finite element codes poses the ability to model soil consolidation, and it was the goal of this research to assess the ability of two of these codes, ABAQUS and PLAXIS, to model the large-strain, two-dimensional consolidation processes which occur in hydraulically deposited soils. A series of one- and two-dimensionally drained rectangular models were first created to assess the limitations of ABAQUS and PLAXIS when modeling consolidation of highly compressible soils. Then, geotextile tube and TSF models were created to represent actual scenarios which might be encountered in engineering practice. Several limitations were discovered, including the existence of a minimum preconsolidation stress below which numerical solutions become unstable.

Characterization of the Martian surface deposits by the Mars Pathfinder rover, Sojourner.

NASA Astrophysics Data System (ADS)

Matijevic, J. R.; Crisp, J.; Bickler, D. B.; Banes, R. S.; Cooper, B. K.; Eisen, H. J.; Gensler, J.; Haldemann, A.; Hartman, F.; Jewett, K. A.; Matthies, L. H.; Laubach, S. L.; Mishkin, A. H.; Morrison, J. C.; Nguyen, T. T.; Sirota, A. R.; Stone, H. W.; Stride, S.; Sword, L. F.; Tarsala, J. A.; Thompson, A. D.; Wallace, M. T.; Welch, R.; Wellman, E.; Wilcox, B. H.; Ferguson, D.; Jenkins, P.; Kolecki, J.; Landis, G. A.; Wilt, D.; Rover Team

1997-12-01

The Mars Pathfinder rover discovered pebbles on the surface and in rocks that may be sedimentary - not volcanic - in origin. Surface pebbles may have been rounded by Ares flood waters or liberated by weathering of sedimentary rocks called conglomerates. Conglomerates imply that water existed elsewhere and earlier than the Ares flood. Most soil-like deposits are similar to moderately dense soils on Earth. Small amounts of dust are currently settling from the atmosphere.

Gut shuttle service: endozoochory of dispersal-limited soil fauna by gastropods.

PubMed

Türke, Manfred; Lange, Markus; Eisenhauer, Nico

2018-03-01

Numerous important ecosystem functions and services depend on soil biodiversity. However, little is known about the mechanisms which maintain the vast belowground biodiversity and about the filters shaping soil community composition. Yet, biotic interactions like facilitation and dispersal by animals are assumed to play a crucial role, particularly as most soil animal taxa are strongly limited in their active dispersal abilities. Here, we report on a newfound interaction of potentially high ubiquity and importance in soil communities: the endozoochorous dispersal of soil fauna by gastropods. We focus on the dispersal-limited group of oribatid mites, one of the most diverse and abundant soil animal groups. In a field survey in a German riparian forest, 73% of 40 collected slugs (Arion vulgaris) egested a total of 135 oribatid mites, belonging to 35 species. Notably, 70% of the egested mites were alive and survived the gut passage through slugs. Similar results were found for Roman snails (Helix pomatia), indicating the generality of our findings across different gastropod taxa. Complementary laboratory experiments confirmed our field observations, revealing that oribatid mites are, indeed, ingested and egested alive by slugs, and that they are able to independently escape the faeces and colonise new habitats. Our results strongly indicate that gastropods may help soil organisms to disperse within habitats, to overcome dispersal barriers, and to reach short-lived resource patches. Gastropods might even disperse whole multi-trophic micro-ecosystems, a discovery that could have profound implications for our understanding of dispersal mechanisms and the distribution of soil biodiversity.

A heterogeneous boron distribution in soil influences the poplar root system architecture development

NASA Astrophysics Data System (ADS)

Rees, R.; Robinson, B. H.; Hartmann, S.; Lehmann, E.; Schulin, R.

2009-04-01

Poplars are well suited for the phytomanagement of boron (B)-contaminated sites, due to their high transpiration rate and tolerance to elevated soil B concentrations. However, the uptake and the fate of B in poplar stands are not well understood. This information is crucial to improve the design of phytomanagement systems, where the primary role of poplars is to reduce B leaching by reducing the water flux through the contaminated material. Like other trace elements, B occurs heterogeneously in soils. Concentrations can differ up to an order of magnitude within centimetres. These gradients affect plant root growth and thus via preferential flow along the roots water and mass transport in soils to ground and surface waters. Generally there are three possible reactions of plant roots to patches with elevated trace element concentrations in soils: indifference, avoidance, or foraging. While avoidance or indifference might seem to be the most obvious strategies, foraging cannot be excluded a priori, because of the high demand of poplars for B compared to other tree species. We aimed to determine the rooting strategies of poplars in soils where B is either homo- or heterogeneously distributed. We planted 5 cm cuttings of Populus tremula var. Birmensdorf clones in aluminum (Al) containers with internal dimensions of 64 x 67 x 1.2 cm. The soil used was subsoil from northern Switzerland with a naturally low B and organic C concentration. We setup two treatments and a control with three replicates each. We spiked a bigger and a smaller portion of the soil with the same amount of B(OH)3-salt, in order to obtain soil concentrations of 7.5 mg B kg-1 and 20 mg B kg-1. We filled the containers with (a) un-spiked soil, (b) the 7.5 mg B kg-1 soil and (c) heterogeneously. The heterogeneous treatment consisted of one third 20 mg B kg-1 soil and two thirds control soil. We grew the poplars in a small greenhouse over 2 months and from then on in a climate chamber for another 3 months. We irrigated the poplars with modified Hoagland's solution that contained no B. We imaged the roots in the soil every 3rd week using neutron radiography (NR) at the Paul-Scherrer Institute. Living roots can be visualised in soil by NR because of their higher water content compared to the surrounding soil. At the end of the growing period, the Al containers were opened and the soil surface was scanned by a standard office scanner. The soil in the containers was divided into nine equal portions representing different depths and spiked or un-spiked regions in soil profile. We separated roots and soil as well as the aerial parts (stems and leaves). We obtained data on root morphological parameters like root length and root density by evaluating scans of the washed root samples with an image evaluation software. All soil and plant samples were dried, weighed and analyzed for B and mineral nutrients using ICP-OES. Plant vitality parameters like water use, growth and number of living leaves did not show any reaction to the treatments. The oldest poplar leaves from poplars in the B-spiked treatments showed signs of light to serious necrosis. From the neutron radiographs it was apparent that poplar roots reached the walls of the Al- containers during the experiment. Primary roots grew at first strongly in lengths in horizontal as well as in vertical direction and only after this lateral root growth was visible. Although the filling and packing of the containers was done with great care to establish an ideally homogeneous soil profile settlement occurred in some containers resulting in gaps in the profile. However, roots growth did not seem to be deranged since roots simply crossed these gaps and continued growth in the adjacent soil patch. The complete results will be available at the time of the conference.

Ramet spacing of Elymus lanceolatus (thickspike wheatgrass) in response to neighbor density

USGS Publications Warehouse

Humphrey, L.D.; Pyke, David A.

2001-01-01

Many plants exploit patchy resources through clonal foraging. Plants established in field plots were used to determine if Elymus lanceolatus ssp. lanceolatus (Scribner et J.G. Smith) Gould (thickspike wheatgrass) showed a clonal foraging response to neighbour densities, as it had previously shown to patchy soil nutrients. Neighbours consisted of the rhizomatous E. lanceolatus ssp. lanceolatus and the bunchgrass Elymus lanceolatus ssp. wawawaiensis (Scribner et Gould) J.R. Carlson et D.R. Dewey (proposed name), which are both native to the semiarid western U.S.A., and their ratios as well as total densities varied. Rather than an increase in spacing of exploratory ramets at high densities, as expected with clonal foraging, there was a decrease in spacing in both years of the experiment. Fewer target plants produced exploratory ramets at higher densities only in the second year. These reductions in exploratory clonal growth at higher neighbour densities, which were opposite to E. lanceolatus ssp. lanceolatus' response to low-resource patches, occurred perhaps because soil resource levels were too low overall to support rhizome production, and this condition was more pronounced in the second year. Physical resistance from neighbour roots perhaps also reduced rhizome production. However, rhizome growth may not be beneficial in such cases, and plants may be adapted to produce exploratory rhizomes only when some high-resource patches are encountered by the clone.

The Genetic Diversity of Two Brazilian Vellozia (Velloziaceae) with Different Patterns of Spatial Distribution and Pollination Biology

PubMed Central

FRANCESCHINELLI, EDIVANI VILLARON; JACOBI, CLAUDIA M.; DRUMMOND, MARCELA GONÇALVES; RESENDE, MARCELO F. SILVEIRA

2006-01-01

• Background and Aims The genetic structure and variability of two species of Vellozia (Velloziaceae) with restricted distribution in high-altitude quartzitic fields in south-eastern Brazil were studied. Vellozia epidendroides is short, grows on pebbly or sandy soil, and is pollinated by bees. Vellozia leptopetala is arborescent, grows on rock outcrops, and is pollinated by bees and hummingbirds. Both are self-incompatible and have a short, massive flowering strategy. The study aimed to associate differences in their genetic diversity and structure with their microhabitat distribution and pollination ecology. • Methods Leaves from 106 and 139 plants of V. epidendroides and V. leptopetala, respectively, were collected from five patches of each species and prepared for electrophoretic analyses. • Key Results Five enzyme systems could be reliably scored for both species. Vellozia epidendroides showed 100 % of the loci polymorphic for almost all patches. The average number of alleles per locus ranged between 2·2 and 2·4 among patches. The Wright's fixation index (F) for this species was 0·226. A significant θp value indicates that there is a reasonable genetic divergence among patches. Vellozia leptopetala presented 47·5 % of polymorphic loci. All levels of P, A, Ap and of heterozygosities were lower than those of V. epidendroides. Vellozia leptopetala showed high inbreeding within patches. • Conclusions The relatively high values of genetic diversity indices found for V. epidendroides may be associated with its large and widespread populations. On the other hand, the low values of genetic diversity found for V. leptopetala may be related to physical isolation on outcrops and intensive foraging by territorial hummingbirds, which may hinder gene flow among patches, aggravated by the very restricted seed dispersal characteristic of the genus, that facilitates sibling mating. It is important to stress the need to preserve the specific habitats of these species of Vellozia, in particular those of V. leptopetala that has lower genetic diversity and is restricted to rock outcrop environments. PMID:16446285

Low-cost grass restoration using erosion barriers in a degraded African rangeland

USGS Publications Warehouse

Kimiti, David W; Riginos, Corinna; Belnap, Jayne

2017-01-01

Rangeland degradation, typified by extensive bare ground and soil erosion, is a serious problem around the world. In sub-Saharan Africa, rangeland degradation threatens the food security of millions of people who depend on livestock and the region's large mammalian wildlife diversity. We tested the ability of five simple, low-cost erosion barriers to promote grass and forb establishment in a bare ground-dominated rangeland in Kenya. These treatments were: (1) trenches with small berms; (2) bundles of branches; and bundles of branches with (3) elephant dung balls, (4) burlap sacking, or (5) nylon mesh sacking inside them. We also tested whether barrier performance depended on (1) supplemental seeding with the grass Cenchrus ciliaris and (2) whether a barrier was located next to existing vegetation patches versus in the open. Within months, the trench and nylon mesh barriers had accumulated 20–50% more sediment than other treatments and had greater grass and forb seedling establishment. Seeding with Cenchrusresulted in higher herbaceous cover but was not necessary for other grasses to establish. After 3 years, the trench and nylon mesh barriers had created patches of new vegetation averaging 18–63% larger than patches created by the other treatments. Barriers that were initially adjacent to existing vegetation had created new vegetation patches averaging 65% larger than those created by solitary barriers. Results suggest that all barrier types increase grass cover but that trenches—especially if placed next to existing vegetation patches—are a particularly cost-effective way to reduce bare ground and erosion in degraded rangelands.

Local–global overlap in diversity informs mechanisms of bacterial biogeography

PubMed Central

Livermore, Joshua A; Jones, Stuart E

2015-01-01

Spatial variation in environmental conditions and barriers to organism movement are thought to be important factors for generating endemic species, thus enhancing global diversity. Recent microbial ecology research suggested that the entire diversity of bacteria in the global oceans could be recovered at a single site, thus inferring a lack of bacterial endemism. We argue this is not the case in the global ocean, but might be in other bacterial ecosystems with higher dispersal rates and lower global diversity, like the human gut. We quantified the degree to which local and global bacterial diversity overlap in a diverse set of ecosystems. Upon comparison of observed local–global diversity overlap with predictions from a neutral biogeography model, human-associated microbiomes (gut, skin, mouth) behaved much closer to neutral expectations whereas soil, lake and marine communities deviated strongly from the neutral expectations. This is likely a result of differences in dispersal rate among ‘patches', global diversity of these systems, and local densities of bacterial cells. It appears that overlap of local and global bacterial diversity is surprisingly large (but likely not one-hundred percent), and most importantly this overlap appears to be predictable based upon traditional biogeographic parameters like community size, global diversity, inter-patch environmental heterogeneity and patch connectivity. PMID:25848869

Climatic, ecological, and socioeconomic factors associated with West Nile virus incidence in Atlanta, Georgia, U.S.A.

PubMed

Lockaby, Graeme; Noori, Navideh; Morse, Wayde; Zipperer, Wayne; Kalin, Latif; Governo, Robin; Sawant, Rajesh; Ricker, Matthew

2016-12-01

The integrated effects of the many risk factors associated with West Nile virus (WNV) incidence are complex and not well understood. We studied an array of risk factors in and around Atlanta, GA, that have been shown to be linked with WNV in other locations. This array was comprehensive and included climate and meteorological metrics, vegetation characteristics, land use / land cover analyses, and socioeconomic factors. Data on mosquito abundance and WNV mosquito infection rates were obtained for 58 sites and covered 2009-2011, a period following the combined storm water - sewer overflow remediation in that city. Risk factors were compared to mosquito abundance and the WNV vector index (VI) using regression analyses individually and in combination. Lagged climate variables, including soil moisture and temperature, were significantly correlated (positively) with vector index as were forest patch size and percent pine composition of patches (both negatively). Socioeconomic factors that were most highly correlated (positively) with the VI included the proportion of low income households and homes built before 1960 and housing density. The model selected through stepwise regression that related risk factors to the VI included (in the order of decreasing influence) proportion of houses built before 1960, percent of pine in patches, and proportion of low income households. © 2016 The Society for Vector Ecology.

Arbuscular mycorrhizal fungal assemblages in biological crusts from a Neotropical savanna are not related to the dominant perennial Trachypogon.

PubMed

Hernández-Hernández, R M; Roldán, A; Caravaca, F; Rodriguez-Caballero, G; Torres, M P; Maestre, F T; Alguacil, M M

2017-01-01

Knowledge of the arbuscular mycorrhizal fungal assemblages in the Trachypogon savanna ecosystems is very important to a better understanding of the ecological processes mediated by this soil microbial group that affects multiple ecosystem functions. Considering the hypothesis that the biocrusts can be linked to vegetation through the arbuscular fungi mycelial network, the objectives proposed in this study were to determine (i) whether there are arbuscular mycorrhizal fungi (AMF) in the biocrusts (ii) whether arbuscular mycorrhizal fungal assemblages are linked to the Trachypogon patches, and (iii) whether the composition of the assemblages is related to soil properties affected by microbiological activity. The community structure of the AMF was investigated in three habitats: rhizospheric soil and roots of Trachypogon vestitus, biological soil crusts, and bare soil. The canonical correspondence analysis showed that two soil properties related to enzymatic activity (protease and β-glucosidase) significantly affected the community composition of the AMF. The biocrusts in the Venezuelan savanna are colonized by an AM fungal community linked to that of the bare soil and significantly different from that hosted by the roots of the surrounding T. vestitus, suggesting that assemblages of AMF in biocrusts might be related more closely to those of annual plant species appearing in favorable conditions. Copyright © 2016 Elsevier B.V. All rights reserved.

Mapping and determinism of soil microbial community distribution across an agricultural landscape.

PubMed

Constancias, Florentin; Terrat, Sébastien; Saby, Nicolas P A; Horrigue, Walid; Villerd, Jean; Guillemin, Jean-Philippe; Biju-Duval, Luc; Nowak, Virginie; Dequiedt, Samuel; Ranjard, Lionel; Chemidlin Prévost-Bouré, Nicolas

2015-06-01

Despite the relevance of landscape, regarding the spatial patterning of microbial communities and the relative influence of environmental parameters versus human activities, few investigations have been conducted at this scale. Here, we used a systematic grid to characterize the distribution of soil microbial communities at 278 sites across a monitored agricultural landscape of 13 km². Molecular microbial biomass was estimated by soil DNA recovery and bacterial diversity by 16S rRNA gene pyrosequencing. Geostatistics provided the first maps of microbial community at this scale and revealed a heterogeneous but spatially structured distribution of microbial biomass and diversity with patches of several hundreds of meters. Variance partitioning revealed that both microbial abundance and bacterial diversity distribution were highly dependent of soil properties and land use (total variance explained ranged between 55% and 78%). Microbial biomass and bacterial richness distributions were mainly explained by soil pH and texture whereas bacterial evenness distribution was mainly related to land management. Bacterial diversity (richness, evenness, and Shannon index) was positively influenced by cropping intensity and especially by soil tillage, resulting in spots of low microbial diversity in soils under forest management. Spatial descriptors also explained a small but significant portion of the microbial distribution suggesting that landscape configuration also shapes microbial biomass and bacterial diversity. © 2015 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.

142 E Ontario, October 2014, Lindsay Light Radiological Survey

EPA Pesticide Factsheets

During removal of granite tiles at the store front it was discovered that an existing foundation was present and appeared to be adequate to support the planned renovations. No disturbance of fill soil beneath the sidewalk area was necessary.

Post-fire redistribution of soil carbon and nitrogen at a grassland-shrubland ecotone

USGS Publications Warehouse

Wang, Guan; Li, Junran; Ravi, Sujith; Dukes, David; Gonzales, Howell B.; Sankey, Joel B.

2018-01-01

The rapid conversion of grasslands into shrublands has been observed in many arid and semiarid regions worldwide. Studies have shown that fire can provide certain forms of reversibility for shrub-grass transition due to resource homogenization and shrub mortality, especially in the early stages of shrub encroachment. Field-level post-fire soil resource redistribution has rarely been tested. Here we used prescribed fire in a shrubland-grassland transition zone in the northern Chihuahuan Desert to test the hypothesis that fire facilitates the remobilization of nutrient-enriched soil from shrub microsites to grass and bare microsites and thereby reduces the spatial heterogeneity of soil resources. Results show that the shrub microsites had the lowest water content compared to grass and bare microsites after fire, even when rain events occurred. Significant differences of total soil carbon (TC) and total soil nitrogen (TN) among the three microsites disappeared one year after the fire. The spatial autocorrelation distance increased from 1~2 m, approximately the mean size of an individual shrub canopy, to over 5 m one year after the fire for TC and TN. Patches of high soil C and N decomposed one year after the prescribed fire. Overall, fire stimulates the transfer of soil C and N from shrub microsites to nutrient-depleted grass and bare microsites. Such a redistribution of soil C and N, coupled with the reduced soil water content under the shrub canopies, suggests that fire might influence the competition between shrubs and grasses, leading to a higher grass, compared to shrub, coverage in this ecotone.

Can we manipulate root system architecture to control soil erosion?

NASA Astrophysics Data System (ADS)

Ola, A.; Dodd, I. C.; Quinton, J. N.

2015-09-01

Soil erosion is a major threat to soil functioning. The use of vegetation to control erosion has long been a topic for research. Much of this research has focused on the above-ground properties of plants, demonstrating the important role that canopy structure and cover plays in the reduction of water erosion processes. Less attention has been paid to plant roots. Plant roots are a crucial yet under-researched factor for reducing water erosion through their ability to alter soil properties, such as aggregate stability, hydraulic function and shear strength. However, there have been few attempts to specifically manipulate plant root system properties to reduce soil erosion. Therefore, this review aims to explore the effects that plant roots have on soil erosion and hydrological processes, and how plant root architecture might be manipulated to enhance its erosion control properties. We demonstrate the importance of root system architecture for the control of soil erosion. We also show that some plant species respond to nutrient-enriched patches by increasing lateral root proliferation. The erosional response to root proliferation will depend upon its location: at the soil surface dense mats of roots may reduce soil erodibility but block soil pores thereby limiting infiltration, enhancing runoff. Additionally, in nutrient-deprived regions, root hair development may be stimulated and larger amounts of root exudates released, thereby improving aggregate stability and decreasing erodibility. Utilizing nutrient placement at specific depths may represent a potentially new, easily implemented, management strategy on nutrient-poor agricultural land or constructed slopes to control erosion, and further research in this area is needed.

Can weighing lysimeter ET represent surrounding field ET well enough to test flux station measurements of daily and sub-daily ET?

NASA Astrophysics Data System (ADS)

Evett, Steven R.; Schwartz, Robert C.; Howell, Terry A.; Louis Baumhardt, R.; Copeland, Karen S.

2012-12-01

Weighing lysimeters and neutron probes (NP) are both used to determine the change in soil water storage needed to solve for evapotranspiration (ET) using the soil water balance equation. We compared irrigated cotton ET determined using two large (3 × 3 × 2.4-m deep) weighing lysimeters and eight NP soil water profiles located outside the lysimeters in cotton fields during the BEAREX08 field campaign (see [16] Evett et al., 2012). The objectives were to (i) determine if lysimeter-based ET fluxes were representative of those from the fields, designated NE and SE, in which the lysimeters were centered, and (ii) investigate different methods of computing the soil water balance using NP data. Field fluxes were determined from the soil water balance using neutron probe measurements of change in profile water content storage. Fluxes of ET from the SE lysimeter were representative of those from the field throughout the season and can be used with reasonable certainty for comparisons of ET fluxes and energy balance closure derived from Bowen ratio (BR) and eddy covariance (EC) measurements whose footprints lay in the SE field. Comparisons of ET fluxes from EC and BR systems to those from the NE lysimeter should consider that NE lysimeter fluxes were up to 18% larger than those from the NE field during the period of rapid vegetative growth. This was due to plants on the lysimeter having greater height and width than those in the field. Nevertheless, the data from this and companion studies documents substantial underestimation of crop ET by EC stations under the conditions of BEAREX08. Comparison of zero flux plane (ZFP) and simple soil water balance methods of calculating ET from NP data showed them to be equivalent in this study; and for the ZFP method, the depth of the control volume should be determined by the depth at which the hydraulic gradient reverses, not by the depth of calculated minimum flux. If supported by a sufficiently dense and widespread network of deep soil water balance based estimates of ET in the surrounding patch and by ancillary measurements of crop stand and growth within the lysimeter and in the surrounding patch, a weighing lysimeter can provide accurate ET ground truth for comparisons with ET estimated using flux stations or ET calculated using satellite imagery. It must be emphasized that the water balance measurements must include soil profile water content measurements to well below (e.g., 0.5 to 1 m below) the root zone in order to close the water balance.

Spatio-temporal patterns in land use and management affecting surface runoff response of agricultural catchments - a review

NASA Astrophysics Data System (ADS)

Fiener, P.; Auerswald, K.; van Oost, K.

2009-04-01

In many landscapes, land use creates a complex pattern in addition to the patterns resulting from soil, topography and rain. Despite the static layout of fields, a spatio-temporally highly variable situation regarding the surface runoff and erosion processes results from the asynchronous seasonal variation associated with different land uses. While the behaviour of individual land-uses and their seasonal variation is analyzed in many studies, the spatio-temporal interaction related to this pattern is rarely studied despite its crucial influence on hydrological and geomorphic response of catchments. The difficulty in studying such interactions mainly results from the fact that it is impossible to set up a replicated experiment on the landscape scale. The purpose of this review is to present the advances made thus far in quantifying the effects of patchiness of land use and management on surface runoff response in agricultural catchments. We will focus on the effects of spatio-temporal patterns in land use patches on hydraulic connectivity between patches and within catchments. This will include the temporal patterns in land management affecting infiltration, surface roughness and hence runoff concentration within single fields or land use patches insofar as these effects must be known to evaluate the combined effect of patch behaviour in space and time on catchment connectivity and surface runoff. Surface runoff effects of patchiness and connectivity between patches or within a catchment, can either be addressed by modelling studies or by comprehensive catchment field measurements, e.g. paired-watershed experiments or landscape scale studies on different scales. This limits our review to studies at the scale of small catchments < 10 km², where the time constant of the network (i.e. travel time through it) is smaller than the infiltration phase. Despite this limitation, these small catchments are important as they constitute 2/3 of the total surface of large water drainage networks.

Azadirachtin blocks the calcium channel and modulates the cholinergic miniature synaptic current in the central nervous system of Drosophila.

PubMed

Qiao, Jingda; Zou, Xiaolu; Lai, Duo; Yan, Ying; Wang, Qi; Li, Weicong; Deng, Shengwen; Xu, Hanhong; Gu, Huaiyu

2014-07-01

Azadirachtin is a botanical pesticide, which possesses conspicuous biological actions such as insecticidal, anthelmintic, antifeedancy, antimalarial effects as well as insect growth regulation. Deterrent for chemoreceptor functions appears to be the main mechanism involved in the potent biological actions of Azadirachtin, although the cytotoxicity and subtle changes to skeletal muscle physiology may also contribute to its insecticide responses. In order to discover the effects of Azadirachtin on the central nervous system (CNS), patch-clamp recording was applied to Drosophila melanogaster, which has been widely used in neurological research. Here, we describe the electrophysiological properties of a local neuron located in the suboesophageal ganglion region of D. melanogaster using the whole brain. The patch-clamp recordings suggested that Azadirachtin modulates the properties of cholinergic miniature excitatory postsynaptic current (mEPSC) and calcium currents, which play important roles in neural activity of the CNS. The frequency of mEPSC and the peak amplitude of the calcium currents significantly decreased after application of Azadirachtin. Our study indicates that Azadirachtin can interfere with the insect's CNS via inhibition of excitatory cholinergic transmission and partly blocking the calcium channel. © 2013 Society of Chemical Industry.

Colloidal gas aphron foams: A novel approach to a hydrogel based tissue engineered myocardial patch

NASA Astrophysics Data System (ADS)

Johnson, Elizabeth Edna

Cardiovascular disease currently affects an estimated 58 million Americans and is the leading cause of death in the US. Over 2.3 million Americans are currently living with heart failure a leading cause of which is acute myocardial infarction, during which a part of the heart muscle is damaged beyond repair. There is a great need to develop treatments for damaged heart tissue. One potential therapy involves replacement of nonfunctioning scar tissue with a patch of healthy, functioning tissue. A tissue engineered cardiac patch would be ideal for such an application. Tissue engineering techniques require the use of porous scaffolds, which serve as a 3-D template for initial cell attachment and grow-th leading to tissue formation. The scaffold must also have mechanical properties closely matching those of the tissues at the site of implantation. Our research presents a new approach to meet these design requirements. A unique interaction between poly(vinyl alcohol) and amino acids has been discovered by our lab, resulting in the production of novel gels. These unique synthetic hydrogels along with one natural hydrogel, alginate (derived from brown seaweed), have been coupled with a new approach to tissue scaffold fabrication using solid colloidal gas aphrons (CGAs). CGAs are colloidal foams containing uniform bubbles with diameters on the order of micrometers. Upon solidification the GCAs form a porous, 3-D network suitable for a tissue scaffold. The project encompasses four specific aims: (I) characterize hydrogel formation mechanism, (II) use colloidal gas aphrons to produce hydrogel scaffolds, (III) chemically and physically characterize scaffold materials and (IV) optimize and evaluate scaffold biocompatibility.

Postoperative Anticholinergic Poisoning: Concealed Complications of a Commonly Used Medication.

PubMed

Zhang, Xiao Chi; Farrell, Natalija; Haronian, Thomas; Hack, Jason

2017-10-01

Scopolamine is a potent anticholinergic compound used commonly for the prevention of postoperative nausea and vomiting. Scopolamine can cause atypical anticholinergic syndromes due to its prominent central antimuscarinic effects. A 47-year-old female presented to the emergency department (ED) 20 h after hospital discharge for a right-knee meniscectomy, with altered mental status (AMS) and dystonic extremity movements that began 12 h after her procedure. Her vital signs were normal and physical examination revealed mydriasis, visual hallucinations, hyperreflexia, and dystonic movements. Laboratory data, lumbar puncture, and computed tomography were unrevealing. The sustained AMS prompted a re-evaluation that revealed urinary overflow with 500 mL of retained urine discovered on ultrasound and a scopolamine patch hidden behind her ear. Her mental status improved shortly after patch removal and physostigmine, with complete resolution after 24 h with discharge diagnosis of scopolamine-induced anticholinergic toxicity. WHY SHOULD AN EMERGENCY PHYSICIAN BE AWARE OF THIS?: Although therapeutically dosed scopolamine transdermal patches rarely cause complications, incomplete toxidromes can be insidiously common in polypharmacy settings. Providers should thoroughly evaluate the skin of intoxicated patients for additional adherent medications that may result in a delay in ED diagnosis and curative therapies. Our case, as well as rare case reports of therapeutic scopolamine-induced anticholinergic toxicity, demonstrates that peripheral anticholinergic effects, such as tachycardia, dry mucous membranes, and hyperpyrexia are often not present, and incremental doses of physostigmine may be required to reverse scopolamine's long duration of action. This further complicates identification of the anticholinergic toxidrome and diagnosis. Published by Elsevier Inc.

Lithification of vitric- and clastic-matrix breccias - SEM petrography

NASA Technical Reports Server (NTRS)

Phinney, W. C.; Mckay, D. S.; Warner, J. L.; Simonds, C. H.

1976-01-01

A scanning electron microscope was used in a petrographic investigation of the matrix textures of 41 lunar breccias ranging from very friable soil clods through coherent microbreccias and tough vitric breccias to tough, fine-grained crystalline breccias. It was found that as their coherence increases, the matrices display a gradual increase in the content of glass from 1 or 2% as filaments less than 1 micron across through 5-50% as irregularly shaped patches up to 200 microns across to over 50% as continuous networks.

Land Capability Potential Index (LCPI) for the Lower Missouri River Valley

USGS Publications Warehouse

Jacobson, Robert B.; Chojnacki, Kimberly A.; Reuter, Joanna M.

2007-01-01

The Land Capability Potential Index (LCPI) was developed to serve as a relatively coarse-scale index to delineate broad land capability classes in the valley of the Lower Missouri River. The index integrates fundamental factors that determine suitability of land for various uses, and may provide a useful mechanism to guide land-management decisions. The LCPI was constructed from integration of hydrology, hydraulics, land-surface elevations, and soil permeability (or saturated hydraulic conductivity) datasets for an area of the Lower Missouri River, river miles 423–670. The LCPI estimates relative wetness based on intersecting water-surface elevations, interpolated from measurements or calculated from hydraulic models, with a high-resolution land-surface elevation dataset. The potential for wet areas to retain or drain water is assessed using soil-drainage classes that are estimated from saturated hydraulic conductivity of surface soils. Terrain mapping that delineates areas with convex, concave, and flat parts of the landscape provides another means to assess tendency of landscape patches to retain surface water.

Can we manipulate root system architecture to control soil erosion?

NASA Astrophysics Data System (ADS)

Ola, A.; Dodd, I. C.; Quinton, J. N.

2015-03-01

Soil erosion is a major threat to soil functioning. The use of vegetation to control erosion has long been a topic for research. Much of this research has focused on the above ground properties of plants, demonstrating the important role that canopy structure and cover plays in the reduction of water erosion processes. Less attention has been paid to plant roots. Plant roots are a crucial yet under-researched factor for reducing water erosion through their ability to alter soil properties, such as aggregate stability, hydraulic function and shear strength. However, there have been few attempts to manipulate plant root system properties to reduce soil erosion. Therefore, this review aims to explore the effects that plant roots have on soil erosion and hydrological processes, and how plant root architecture might be manipulated to enhance its erosion control properties. We clearly demonstrate the importance of root system architecture for the control of soil erosion. We also demonstrate that some plant species respond to nutrient enriched patches by increasing lateral root proliferation. The soil response to root proliferation will depend upon its location: at the soil surface dense mats of roots may block soil pores thereby limiting infiltration, enhancing runoff and thus erosion; whereas at depth local increases in shear strength may reinforce soils against structural failure at the shear plane. Additionally, in nutrient deprived regions, root hair development may be stimulated and larger amounts of root exudates released, thereby improving aggregate stability and decreasing erodibility. Utilising nutrient placement at depth may represent a potentially new, easily implemented, management strategy on nutrient poor agricultural land or constructed slopes to control erosion, and further research in this area is needed.

Algorithmic commonalities in the parallel environment

NASA Technical Reports Server (NTRS)

Mcanulty, Michael A.; Wainer, Michael S.

1987-01-01

The ultimate aim of this project was to analyze procedures from substantially different application areas to discover what is either common or peculiar in the process of conversion to the Massively Parallel Processor (MPP). Three areas were identified: molecular dynamic simulation, production systems (rule systems), and various graphics and vision algorithms. To date, only selected graphics procedures have been investigated. They are the most readily available, and produce the most visible results. These include simple polygon patch rendering, raycasting against a constructive solid geometric model, and stochastic or fractal based textured surface algorithms. Only the simplest of conversion strategies, mapping a major loop to the array, has been investigated so far. It is not entirely satisfactory.

Phytophthora siskiyouensis

Treesearch

E. M. Hansen; P. Reeser; S. Rooney-Latham

2011-01-01

Phytophthora siskiyouensis Reeser & E.M. Hansen (2007) was discovered first in streams and soil in Curry County, Oregon in areas dominated by native forest, and most isolates continue to come from these sources. Only later, and still infrequently, were isolates of the new species recovered from diseased forest plants. Recent...

Superfund record of decision (EPA Region 5): Muskego Sanitary Landfill, Muskego, WI. (First remedial action), June 1992. Interim report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1992-06-12

The 56-acre Muskego Sanitary Landfill site was located in the City of Muskego, Waukesha County, Wisconsin. From the 1950's to 1981, municipal waste, waste oils, paint products, and other waste were disposed of at the site. The site was separated into three disposal areas: the Old Fill Area (38 acres); the Southeast Fill Area (16 acres); and the Non-Contiguous Fill Area (4.2 acres), composed of a drum trench, north and south refuse trenches, and an L-shaped fill area, all containing waste similar to the Old Fill Area. As a result of deteriorating water quality at onsite ground water monitoring wells,more » Waste Management of Wisconsin Inc. (WMWI) and the state conducted numerous investigations that revealed elevated levels of contaminants in the ground water. Two separate areas at the site were discovered to contain buried drums and contaminated soil. The first area was located east of the Non-Contiguous Fill Area. The second area, known as the drum trench, was discovered in a portion of the Non-Contiguous Fill Area and contained 989 drums and 2,500 cubic yards of contaminated soil. The interim ROD addressed the control and remediation of the contamination sources, including landfill waste, contaminated soils, leachate, and landfill gas. The primary contaminants of concern affecting the soil and ground water were VOCs, including benzene, toluene, and xylenes; and other organics, including chlorinated ethanes, ketones, PAHs, PCBs, pesticides, phenols, and phthalates.« less

Fossil Microorganisms and Formation of Early Precambrian Weathering Profiles

NASA Technical Reports Server (NTRS)

Rozanov, A. Yu; Astafieva, M. M.; Vrevsky, A. B.; Alfimova, N. A.; Matrenichev, V. A.; Hoover, R. B.

2009-01-01

Weathering crusts are the only reliable evidences of the existence of continental conditions. Often they are the only source of information about exogenous processes and subsequently about conditions under which the development of the biosphere occurred. A complex of diverse fossil microorganisms was discovered as a result of Scanning Electron Microscope investigations. The chemical composition of the discovered fossils is identical to that of the host rocks and is represented by Si, Al, Fe, Ca and Mg. Probably, the microorganisms fixed in rocks played the role of catalyst. The decomposition of minerals comprising the rocks and their transformation into clayey (argillaceous) minerals, most likely occurred under the influence of microorganisms. And may be unique weathering crusts of Early Precambrian were formed due to interaction between specific composition of microorganism assemblage and conditions of hypergene transformations. So it is possible to speak about colonization of land by microbes already at that time and about existence of single raw from weathering crusts (Primitive soils) to real soils.

The effect on the radon diffusion coefficient of long-term exposure of waterproof membranes to various degradation agents.

PubMed

Navrátilová Rovenská, Katerina

2014-07-01

Waterproofing, usually made of bitumen or polymers with various additives, is used to protect buildings mainly against dampness, but also against radon transported from the soil beneath the building. The radon diffusion coefficient is a material property which is considered to be strongly influenced by the inner structure (chemical composition, crystallinity) of a measured sample. We have used this parameter together with measurements of mechanical properties (hardness, tensile strength, elongation at break, etc.) and FTIR spectroscopy has been used in order to describe the changes in material properties induced by long-term degradation. This paper summarizes the results of radon diffusion coefficient measurements of waterproof materials exposed to radon, soil bacteria, high temperature and combinations of these factors. We have discovered changes as high as 83 % have been discovered compared to virgin samples. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Earth Observation

NASA Image and Video Library

2014-08-19

ISS040-E-103496 (19 Aug. 2014) --- On an unusually cloud-free day at the height of the dry season in Amazonia, several fires were burning, giving rise to a broad smoke pall easily seen from the International Space Station, photographed by an Expedition 40 crew member. Parts of the space station appear along the margins of the image. Against the backdrop of the dark green rainforest, several fires follow the major highway BR 163 (lower center of the image to the top left). Fires are set to clear patches of forest for agriculture, a process that reveals red-brown soils. A long line of new cleared patches snakes east from BR 163 towards the remote valley of the Rio Crepori. Extensive deforested areas in Brazil?s state of Mato Grosso appear as tan areas across the top of the image. Fires show the advance of deforestation into the state of Para, the area shown in most of this view. Para is now second after Mato Grosso in terms of deforestation acreage.

Individual-Based Model of Microbial Life on Hydrated Rough Soil Surfaces

PubMed Central

Kim, Minsu; Or, Dani

2016-01-01

Microbial life in soil is perceived as one of the most interesting ecological systems, with microbial communities exhibiting remarkable adaptability to vast dynamic environmental conditions. At the same time, it is a notoriously challenging system to understand due to its complexity including physical, chemical, and biological factors in synchrony. This study presents a spatially-resolved model of microbial dynamics on idealised rough soil surfaces represented as patches with different (roughness) properties that preserve the salient hydration physics of real surfaces. Cell level microbial interactions are considered within an individual-based formulation including dispersion and various forms of trophic dependencies (competition, mutualism). The model provides new insights into mechanisms affecting microbial community dynamics and gives rise to spontaneous formation of microbial community spatial patterns. The framework is capable of representing many interacting species and provides diversity metrics reflecting surface conditions and their evolution over time. A key feature of the model is its spatial scalability that permits representation of microbial processes from cell-level (micro-metric scales) to soil representative volumes at sub-metre scales. Several illustrative examples of microbial trophic interactions and population dynamics highlight the potential of the proposed modelling framework to quantitatively study soil microbial processes. The model is highly applicable in a wide range spanning from quantifying spatial organisation of multiple species under various hydration conditions to predicting microbial diversity residing in different soils. PMID:26807803

Effects of Erosion from Mounds of Different Termite Genera on Distinct Functional Grassland Types in an African Savannah.

PubMed

Gosling, Cleo M; Cromsigt, Joris P G M; Mpanza, Nokukhanya; Olff, Han

A key aspect of savannah vegetation heterogeneity is mosaics formed by two functional grassland types, bunch grasslands, and grazing lawns. We investigated the role of termites, important ecosystem engineers, in creating high-nutrient patches in the form of grazing lawns. Some of the ways termites can contribute to grazing lawn development is through erosion of soil from aboveground mounds to the surrounding soil surface. This may alter the nutrient status of the surrounding soils. We hypothesize that the importance of this erosion varies with termite genera, depending on feeding strategy and mound type. To test this, we simulated erosion by applying mound soil from three termite genera ( Macrotermes , Odontotermes , and Trinervitermes ) in both a field experiment and a greenhouse experiment. In the greenhouse experiment, we found soils with the highest macro nutrient levels (formed by Trinervitermes ) promoted the quality and biomass of both a lawn ( Digitaria longiflora ) and a bunch ( Sporobolus pyramidalis ) grass species. In the field we found that soils with the highest micro nutrient levels (formed by Macrotermes ) showed the largest increase in cover of grazing lawn species. By linking the different nutrient availability of the mounds to the development of different grassland states, we conclude that the presence of termite mounds influences grassland mosaics, but that the type of mound plays a crucial role in determining the nature of the effects.

Geomys bursars burrowing patterns: influence of season and food patch structure

USGS Publications Warehouse

Andersen, Douglas C.

1987-01-01

The relationship between belowground food resources and the pattern and pace of soil excavation by Geomys bursarius, the plains pocket gopher, was assessed during spring and autumn using replicated 18 x 18 m enclosures containing uniform arrays of food plants (Daucus carota) at spacings assumed to result in burrowing being energetically profitable (25 and 50 cm) or unprofitable (100 cm and empty). Soil excavation rate, measured in terms of either daily additions to tunnel length or volume, or the maximum volume excavated during a 3-d interval, varied greatly among individuals. No significant effect due to season or density of belowground plant biomass was detected when burrowing was profitable. Individuals readily initiated aboveground travel in unprofitable treatments. Soil bulk density was negatively related and animal body mass positively related to excavation rate. Individuals deposited from 41 to 87% of excavated soil on the ground surface; the remainder was used to backfill previously created tunnels or chambers. Plant size, but not plant spacing, affected the ratio of the volumes deposited aboveground and belowground. There was no evidence that animals in enclosures disturbed soil in a manner quantitatively or qualitatively different from free-ranging adults. The large proportions and absolute quantities (up to 30 L/d) of soil involved suggest that backfilling may affect ecosystem structure and functioning as much as surface mound-building.

Mixed artificial grasslands with more roots improved mine soil infiltration capacity

NASA Astrophysics Data System (ADS)

Wu, Gao-Lin; Yang, Zheng; Cui, Zeng; Liu, Yu; Fang, Nu-Fang; Shi, Zhi-Hua

2016-04-01

Soil water is one of the critical limiting factors in achieving sustainable revegetation. Soil infiltration capacity plays a vital role in determining the inputs from precipitation and enhancing water storage, which are important for the maintenance and survival of vegetation patches in arid and semi-arid areas. Our study investigated the effects of different artificial grasslands on soil physical properties and soil infiltration capacity. The artificial grasslands were Medicago sativa, Astragalus adsurgens, Agropyron mongolicum, Lespedeza davurica, Bromus inermis, Hedysarum scoparium, A. mongolicum + Artemisia desertorum, A. adsurgens + A. desertorum and M. sativa + B. inermis. The soil infiltration capacity index (SICI), which was based on the average infiltration rate of stage I (AIRSI) and the average infiltration rate of stage III (AIRS III), was higher (indicating that the infiltration capacity was greater) under the artificial grasslands than that of the bare soil. The SICI of the A. adsurgens + A. desertorum grassland had the highest value (1.48) and bare soil (-0.59) had the lowest value. It was evident that artificial grassland could improve soil infiltration capacity. We also used principal component analysis (PCA) to determine that the main factors that affected SICI were the soil water content at a depth of 20 cm (SWC20), the below-ground root biomasses at depths of 10 and 30 cm (BGB10, BGB30), the capillary porosity at a depth of 10 cm (CP10) and the non-capillary porosity at a depth of 20 cm (NCP20). Our study suggests that the use of Legume-poaceae mixtures and Legume-shrub mixtures to create grasslands provided an effective ecological restoration approach to improve soil infiltration properties due to their greater root biomasses. Furthermore, soil water content, below-ground root biomass, soil capillary porosity and soil non-capillary porosity were the main factors that affect the soil infiltration capacity.

Diversity and Activity of Denitrifiers of Chilean Arid Soil Ecosystems

PubMed Central

Orlando, Julieta; Carú, Margarita; Pommerenke, Bianca; Braker, Gesche

2012-01-01

The Chilean sclerophyllous matorral is a Mediterranean semiarid ecosystem affected by erosion, with low soil fertility, and limited by nitrogen. However, limitation of resources is even more severe for desert soils such as from the Atacama Desert, one of the most extreme arid deserts on Earth. Topsoil organic matter, nitrogen and moisture content were significantly higher in the semiarid soil compared to the desert soil. Although the most significant loss of biologically preferred nitrogen from terrestrial ecosystems occurs via denitrification, virtually nothing is known on the activity and composition of denitrifier communities thriving in arid soils. In this study we explored denitrifier communities from two soils with profoundly distinct edaphic factors. While denitrification activity in the desert soil was below detection limit, the semiarid soil sustained denitrification activity. To elucidate the genetic potential of the soils to sustain denitrification processes we performed community analysis of denitrifiers based on nitrite reductase (nirK and nirS) genes as functional marker genes for this physiological group. Presence of nirK-type denitrifiers in both soils was demonstrated but failure to amplify nirS from the desert soil suggests very low abundance of nirS-type denitrifiers shedding light on the lack of denitrification activity. Phylogenetic analysis showed a very low diversity of nirK with only three distinct genotypes in the desert soil which conditions presumably exert a high selection pressure. While nirK diversity was also limited to only few, albeit distinct genotypes, the semiarid matorral soil showed a surprisingly broad genetic variability of the nirS gene. The Chilean matorral is a shrub land plant community which form vegetational patches stabilizing the soil and increasing its nitrogen and carbon content. These islands of fertility may sustain the development and activity of the overall microbial community and of denitrifiers in particular. PMID:22493591

Toxicity Assessment of Contaminated Soils of Solid Domestic Waste Landfill

NASA Astrophysics Data System (ADS)

Pasko, O. A.; Mochalova, T. N.

2014-08-01

The paper delivers the analysis of an 18-year dynamic pattern of land pollutants concentration in the soils of a solid domestic waste landfill. It also presents the composition of the contaminated soils from different areas of the waste landfill during its operating period. The authors calculate the concentrations of the following pollutants: chrome, nickel, tin, vanadium, lead, cuprum, zinc, cobalt, beryllium, barium, yttrium, cadmium, arsenic, germanium, nitrate ions and petrochemicals and determine a consistent pattern of their spatial distribution within the waste landfill area as well as the dynamic pattern of their concentration. Test-objects are used in experiments to make an integral assessment of the polluted soil's impact on living organisms. It was discovered that the soil samples of an animal burial site are characterized by acute toxicity while the area of open waste dumping is the most dangerous in terms of a number of pollutants. This contradiction can be attributed to the synergetic effect of the polluted soil, which accounts for the regularities described by other researchers.

Vertical movement of iron-cyanide complexes in soils of a former Manufactured Gas Plant site

NASA Astrophysics Data System (ADS)

Sut, Magdalena; Repmann, Frank; Raab, Thomas

2015-04-01

In Germany, soil and groundwater at more than a thousand sites are contaminated with iron-cyanide complexes. These contaminations originate from the gas purification process that was conducted in Manufactured Gas Plants (MGP). The phenomenon of iron-cyanide complexes mobility in soil, according to the literature, is mainly governed by the dissolution and precipitation of ferric ferrocyanide, which is only slightly soluble (< 1 mg L-1) under acidic conditions. This study suggests vertical transport of a colloidal ferric ferrocyanide, in the excess of iron and circum-neutral pH conditions, as an alternative process that influences the retardation of the pollutant movement through the soil profile. Preliminary in situ investigations of the two boreholes implied transport of ferric ferricyanide from the initial deposition in the wastes layer towards the sandy loam material (secondary accumulation), which possibly retarded the mobility of cyanide (CN). The acidic character of the wastes and the accumulation of the blue patches suggested the potential filter function of a sandy loam material due to colloidal transport of the ferric ferricyanide. Series of batch and column experiments, using sandy loam soil, revealed reduction of CN concentration due to mechanical filtration of precipitated solid iron-cyanide complexes and due to the formation of potassium manganese iron-cyanide (K2Mn[Fe(CN)6]).

Influence of cattle wastes on nitrous oxide and methane fluxes in pasture land

DOE Office of Scientific and Technical Information (OSTI.GOV)

Flessa, H.; Doersch, P.; Beese, F.

1996-11-01

Agricultural practices are assumed to contribute significantly to the increase in atmospheric N{sub 2}O concentrations observed in the last decades, and they might influence the consumption of atmospheric CH{sub 4}. We report on measurements of N{sub 2}O and CH{sub 4} exchange of a pasture soil, as influenced by droppings of a grazing cattle (Bos taurus) herd. Nitrous oxide and methane fluxes in pasture soil were largely determined by the emission rates from cattle excrement with dung patches being hot spots of CH{sub 4} production and urine-affected areas showing extremely high N{sub 2}O release rates. Methane emissions from dung patches (0.778more » g CH{sub 4}-C per animal and day) were insignificant when compared with those from the rumen of the cattle. Total N{sub 2}O-N losses from the droppings were equivalent to 3.2% of the nitrogen excreted. Based on global data of total nitrogen excretion by dairy cattle, non-dairy cattle, buffalo (Syncerus caffer), and bison during grazing, we estimate the global N{sub 2}O emission from this source to be {approximately}1.18 teragrams N{sub 2}O-N per year, indicating that grazing cattle excretory products are one of the most important sources of atmospheric nitrous oxide. Our work suggests that these sources have been drastically underestimated. 27 refs., 2 figs., 2 tabs.« less

MODIS-based spatiotemporal patterns of soil moisture and evapotranspiration interactions in Tampa Bay urban watershed

NASA Astrophysics Data System (ADS)

Chang, Ni-Bin; Xuan, Zhemin; Wimberly, Brent

2011-09-01

Soil moisture and evapotranspiration (ET) is affected by both water and energy balances in the soilvegetation- atmosphere system, it involves many complex processes in the nexus of water and thermal cycles at the surface of the Earth. These impacts may affect the recharge of the upper Floridian aquifer. The advent of urban hydrology and remote sensing technologies opens new and innovative means to undertake eventbased assessment of ecohydrological effects in urban regions. For assessing these landfalls, the multispectral Moderate Resolution Imaging Spectroradiometer (MODIS) remote sensing images can be used for the estimation of such soil moisture change in connection with two other MODIS products - Enhanced Vegetation Index (EVI), Land Surface Temperature (LST). Supervised classification for soil moisture retrieval was performed for Tampa Bay area on the 2 kmx2km grid with MODIS images. Machine learning with genetic programming model for soil moisture estimation shows advances in image processing, feature extraction, and change detection of soil moisture. ET data that were derived by Geostationary Operational Environmental Satellite (GOES) data and hydrologic models can be retrieved from the USGS web site directly. Overall, the derived soil moisture in comparison with ET time series changes on a seasonal basis shows that spatial and temporal variations of soil moisture and ET that are confined within a defined region for each type of surfaces, showing clustered patterns and featuring space scatter plot in association with the land use and cover map. These concomitant soil moisture patterns and ET fluctuations vary among patches, plant species, and, especially, location on the urban gradient. Time series plots of LST in association with ET, soil moisture and EVI reveals unique ecohydrological trends. Such ecohydrological assessment can be applied for supporting the urban landscape management in hurricane-stricken regions.

Impacts from above-ground activities in the eagle ford shale play on landscapes and hydrologic flows, La Salle County, Texas.

PubMed

Pierre, Jon Paul; Abolt, Charles J; Young, Michael H

2015-06-01

We assess the spatial and geomorphic fragmentation from the recent Eagle Ford Shale play in La Salle County, Texas, USA. Wells and pipelines were overlaid onto base maps of land cover, soil properties, vegetation assemblages, and hydrologic units. Changes to continuity of different ecoregions and supporting landscapes were assessed using the Landscape Fragmentation Tool (a third-party ArcGIS extension) as quantified by land area and continuity of core landscape areas (i.e., those degraded by "edge effects"). Results show decreases in core areas (8.7%; ~33,290 ha) and increases in landscape patches (0.2%; ~640 ha), edges (1.8%; ~6940 ha), and perforated areas (4.2%; ~16230 ha). Pipeline construction dominates landscape disturbance, followed by drilling and injection pads (85, 15, and 0.03% of disturbed area, respectively). An increased potential for soil loss is indicated, with 51% (~5790 ha) of all disturbance regimes occurring on soils with low water-transmission rates (depth to impermeable layer less than 50 cm) and a high surface runoff potential (hydrologic soil group D). Additionally, 88% (~10,020 ha) of all disturbances occurred on soils with a wind erodibility index of approximately 19 kt/km(2)/year (0.19 kt/ha/year) or higher, resulting in an estimated potential of 2 million tons of soil loss per year. Results demonstrate that infrastructure placement is occurring on soils susceptible to erosion while reducing and splitting core areas potentially vital to ecosystem services.

Shrub canopies influence soil temperatures but not nutrient dynamics: An experimental test of tundra snow–shrub interactions

PubMed Central

Myers-Smith, Isla H; Hik, David S

2013-01-01

Shrubs are the largest plant life form in tundra ecosystems; therefore, any changes in the abundance of shrubs will feedback to influence biodiversity, ecosystem function, and climate. The snow–shrub hypothesis asserts that shrub canopies trap snow and insulate soils in winter, increasing the rates of nutrient cycling to create a positive feedback to shrub expansion. However, previous work has not been able to separate the abiotic from the biotic influences of shrub canopies. We conducted a 3-year factorial experiment to determine the influences of canopies on soil temperatures and nutrient cycling parameters by removing ∼0.5 m high willow (Salix spp.) and birch (Betula glandulosa) shrubs, creating artificial shrub canopies and comparing these manipulations to nearby open tundra and shrub patches. Soil temperatures were 4–5°C warmer in January, and 2°C cooler in July under shrub cover. Natural shrub plots had 14–33 cm more snow in January than adjacent open tundra plots. Snow cover and soil temperatures were similar in the manipulated plots when compared with the respective unmanipulated treatments, indicating that shrub canopy cover was a dominant factor influencing the soil thermal regime. Conversely, we found no strong evidence of increased soil decomposition, CO2 fluxes, or nitrate or ammonia adsorbtion under artificial shrub canopy treatments when compared with unmanipulated open tundra. Our results suggest that the abiotic influences of shrub canopy cover alone on nutrient dynamics are weaker than previously asserted. PMID:24198933

Shrub canopies influence soil temperatures but not nutrient dynamics: An experimental test of tundra snow-shrub interactions.

PubMed

Myers-Smith, Isla H; Hik, David S

2013-10-01

Shrubs are the largest plant life form in tundra ecosystems; therefore, any changes in the abundance of shrubs will feedback to influence biodiversity, ecosystem function, and climate. The snow-shrub hypothesis asserts that shrub canopies trap snow and insulate soils in winter, increasing the rates of nutrient cycling to create a positive feedback to shrub expansion. However, previous work has not been able to separate the abiotic from the biotic influences of shrub canopies. We conducted a 3-year factorial experiment to determine the influences of canopies on soil temperatures and nutrient cycling parameters by removing ∼0.5 m high willow (Salix spp.) and birch (Betula glandulosa) shrubs, creating artificial shrub canopies and comparing these manipulations to nearby open tundra and shrub patches. Soil temperatures were 4-5°C warmer in January, and 2°C cooler in July under shrub cover. Natural shrub plots had 14-33 cm more snow in January than adjacent open tundra plots. Snow cover and soil temperatures were similar in the manipulated plots when compared with the respective unmanipulated treatments, indicating that shrub canopy cover was a dominant factor influencing the soil thermal regime. Conversely, we found no strong evidence of increased soil decomposition, CO2 fluxes, or nitrate or ammonia adsorbtion under artificial shrub canopy treatments when compared with unmanipulated open tundra. Our results suggest that the abiotic influences of shrub canopy cover alone on nutrient dynamics are weaker than previously asserted.

A Compilation and Review of over 500 Geoscience Misconceptions

ERIC Educational Resources Information Center

Francek, Mark

2013-01-01

This paper organizes and analyses over 500 geoscience misconceptions relating to earthquakes, earth structure, geologic resources, glaciers, historical geology, karst (limestone terrains), plate tectonics, rivers, rocks and minerals, soils, volcanoes, and weathering and erosion. Journal and reliable web resources were reviewed to discover (1) the…

Coupled atmosphere-biophysics-hydrology models for environmental modeling

USGS Publications Warehouse

Walko, R.L.; Band, L.E.; Baron, Jill S.; Kittel, T.G.F.; Lammers, R.; Lee, T.J.; Ojima, D.; Pielke, R.A.; Taylor, C.; Tague, C.; Tremback, C.J.; Vidale, P.L.

2000-01-01

The formulation and implementation of LEAF-2, the Land Ecosystem–Atmosphere Feedback model, which comprises the representation of land–surface processes in the Regional Atmospheric Modeling System (RAMS), is described. LEAF-2 is a prognostic model for the temperature and water content of soil, snow cover, vegetation, and canopy air, and includes turbulent and radiative exchanges between these components and with the atmosphere. Subdivision of a RAMS surface grid cell into multiple areas of distinct land-use types is allowed, with each subgrid area, or patch, containing its own LEAF-2 model, and each patch interacts with the overlying atmospheric column with a weight proportional to its fractional area in the grid cell. A description is also given of TOPMODEL, a land hydrology model that represents surface and subsurface downslope lateral transport of groundwater. Details of the incorporation of a modified form of TOPMODEL into LEAF-2 are presented. Sensitivity tests of the coupled system are presented that demonstrate the potential importance of the patch representation and of lateral water transport in idealized model simulations. Independent studies that have applied LEAF-2 and verified its performance against observational data are cited. Linkage of RAMS and TOPMODEL through LEAF-2 creates a modeling system that can be used to explore the coupled atmosphere–biophysical–hydrologic response to altered climate forcing at local watershed and regional basin scales.

A Parameterization for the Triggering of Landscape Generated Moist Convection

NASA Technical Reports Server (NTRS)

Lynn, Barry H.; Tao, Wei-Kuo; Abramopoulos, Frank

1998-01-01

A set of relatively high resolution three-dimensional (3D) simulations were produced to investigate the triggering of moist convection by landscape generated mesoscale circulations. The local accumulated rainfall varied monotonically (linearly) with the size of individual landscape patches, demonstrating the need to develop a trigger function that is sensitive to the size of individual patches. A new triggering function that includes the effect of landscapes generated mesoscale circulations over patches of different sizes consists of a parcel's perturbation in vertical velocity (nu(sub 0)), temperature (theta(sub 0)), and moisture (q(sub 0)). Each variable in the triggering function was also sensitive to soil moisture gradients, atmospheric initial conditions, and moist processes. The parcel's vertical velocity, temperature, and moisture perturbation were partitioned into mesoscale and turbulent components. Budget equations were derived for theta(sub 0) and q(sub 0). Of the many terms in this set of budget equations, the turbulent, vertical flux of the mesoscale temperature and moisture contributed most to the triggering of moist convection through the impact of these fluxes on the parcel's temperature and moisture profile. These fluxes needed to be parameterized to obtain theta(sub 0) and q(sub 0). The mesoscale vertical velocity also affected the profile of nu(sub 0). We used similarity theory to parameterize these fluxes as well as the parcel's mesoscale vertical velocity.

The reproductive potential and importance of key management aspects for successful Calluna vulgaris rejuvenation on abandoned Continental heaths.

PubMed

Henning, Katrin; von Oheimb, Goddert; Härdtle, Werner; Fichtner, Andreas; Tischew, Sabine

2017-04-01

The abandonment of traditional pastoralism as well as the use of heath areas for military purposes has had a major impact on dry heaths in the Continental biogeographical region of Europe, causing severe degradation of its key species Calluna vulgaris (L.) HULL. The reproductive potential of this species in a Continental climate is assumed to be low, although there is yet no observational or experimental evidence for this. More knowledge is also needed about cost-effective and sustainable measures to restore abandoned dry heaths in this biogeographical region, because traditional management options are often too expensive (e.g., sod-cutting) or restricted due to environmental laws and the danger of unexploded ammunition (e.g., burning). Using as an example an 800 ha Continental heathland in Germany that has been abandoned for about two decades, we studied the reproductive potential (seed production, soil seed bank, and germination ability) of degenerate C. vulgaris stands. In addition, we conducted a comprehensive field experiment to test the effects of low-intensity, year-round grazing by Heck cattle and Konik horses as well as one-time mowing and patchy exposure of bare soil on the generative rejuvenation (i.e., recruitment and survival) of degenerate C. vulgaris stands over 3 years. We used generalized linear mixed models for statistical analyses. Seed production of degenerate C. vulgaris stands was high as well as the germination ability of their seeds, being similar to Atlantic heathlands. However, soil seed-bank densities were lower than those found in managed or abandoned Atlantic heaths. Overall seedling recruitment in the field was considerably lower in comparison with Atlantic heaths. Low-intensity grazing or one-time mowing did not induce a substantial increase in C. vulgaris recruitment, whereas an additional one-time creation of bare soil patches or the one-time creation of bare soil without subsequent management significantly facilitated seedling recruitment and survival in the first year. However, from the second year on, the positive effect of the creation of bare soil without subsequent management was no longer present. In the third year, survival of juveniles was significantly supported by low-intensity grazing in combination with shallow soil disturbances as well as in combination with one-time mowing and shallow soil disturbances, whereas mowing alone resulted in marginally significant lower survival. The extremely low seedling recruitment requires a careful choice of suitable management measures to promote the survival of sufficient numbers of Calluna individuals. Therefore, we recommend low-intensity grazing with free-ranging robust breeds and the combination of this with one-time mowing as an effective means of supporting generative rejuvenation of C. vulgaris in degraded heaths. However, at the beginning of the restoration process, the creation of bare soil patches for seedling recruitment is crucial. For implementation into practice, we present different strategies to enhance the proportion of bare soil after long-term abandonment of heaths when traditional management options are no longer feasible.

Heterorhabditis sp. (Nematoda: Heterorhabditidae): A Nematode Parasite Isolated from the Banded Cucumber Beetle Diabrotica balteata

PubMed Central

Creighton, C. S.; Fassuliotis, G.

1985-01-01

A nematode identified as Heterorhabditis sp. was discovered in June 1982 in larval cadavers of the banded cucumber beetle, Diabrotica balteata, in soil on wooded land. Effective beetle control (over 95%) was obtained when larvae were exposed to potted soil containing infective stage nematode juveniles or infected larval cadavers. The nematode was propagated in vivo on larvae of D. balteata, Diaphania nitidalis (the pickleworm), and Galleria mellonella (the greater wax moth). This Heterorhabditis sp. has promising potential as a biocontrol agent for the banded cucumber beetle. PMID:19294074

Temperature and aridity regulate spatial variability of soil multifunctionality in drylands across the globe.

PubMed

Durán, Jorge; Delgado-Baquerizo, Manuel; Dougill, Andrew J; Guuroh, Reginald T; Linstädter, Anja; Thomas, Andrew D; Maestre, Fernando T

2018-05-01

The relationship between the spatial variability of soil multifunctionality (i.e., the capacity of soils to conduct multiple functions; SVM) and major climatic drivers, such as temperature and aridity, has never been assessed globally in terrestrial ecosystems. We surveyed 236 dryland ecosystems from six continents to evaluate the relative importance of aridity and mean annual temperature, and of other abiotic (e.g., texture) and biotic (e.g., plant cover) variables as drivers of SVM, calculated as the averaged coefficient of variation for multiple soil variables linked to nutrient stocks and cycling. We found that increases in temperature and aridity were globally correlated to increases in SVM. Some of these climatic effects on SVM were direct, but others were indirectly driven through reductions in the number of vegetation patches and increases in soil sand content. The predictive capacity of our structural equation modelling was clearly higher for the spatial variability of N- than for C- and P-related soil variables. In the case of N cycling, the effects of temperature and aridity were both direct and indirect via changes in soil properties. For C and P, the effect of climate was mainly indirect via changes in plant attributes. These results suggest that future changes in climate may decouple the spatial availability of these elements for plants and microbes in dryland soils. Our findings significantly advance our understanding of the patterns and mechanisms driving SVM in drylands across the globe, which is critical for predicting changes in ecosystem functioning in response to climate change. © 2018 by the Ecological Society of America.

Rover's Wheel Churns Up Bright Martian Soil

NASA Technical Reports Server (NTRS)

2009-01-01

NASA's Mars Exploration Rover Spirit acquired this mosaic on the mission's 1,202nd Martian day, or sol (May 21, 2007), while investigating the area east of the elevated plateau known as 'Home Plate' in the 'Columbia Hills.' The mosaic shows an area of disturbed soil, nicknamed 'Gertrude Weise' by scientists, made by Spirit's stuck right front wheel.

The trench exposed a patch of nearly pure silica, with the composition of opal. It could have come from either a hot-spring environment or an environment called a fumarole, in which acidic, volcanic steam rises through cracks. Either way, its formation involved water, and on Earth, both of these types of settings teem with microbial life.

Spirit acquired this mosaic with the panoramic camera's 753-nanometer, 535-nanometer, and 432-nanometer filters. The view presented here is an approximately true-color rendering.

Rover's Wheel Churns Up Bright Martian Soil (Vertical)

NASA Technical Reports Server (NTRS)

2009-01-01

NASA's Mars Exploration Rover Spirit acquired this mosaic on the mission's 1,202nd Martian day, or sol (May 21, 2007), while investigating the area east of the elevated plateau known as 'Home Plate' in the 'Columbia Hills.' The mosaic shows an area of disturbed soil, nicknamed 'Gertrude Weise' by scientists, made by Spirit's stuck right front wheel.

The trench exposed a patch of nearly pure silica, with the composition of opal. It could have come from either a hot-spring environment or an environment called a fumarole, in which acidic, volcanic steam rises through cracks. Either way, its formation involved water, and on Earth, both of these types of settings teem with microbial life.

The image is presented here as a vertical projection, as if looking straight down, and in false color, which brings out subtle color differences.

Rover's Wheel Churns Up Bright Martian Soil (False Color)

NASA Technical Reports Server (NTRS)

2009-01-01

NASA's Mars Exploration Rover Spirit acquired this mosaic on the mission's 1,202nd Martian day, or sol (May 21, 2007), while investigating the area east of the elevated plateau known as 'Home Plate' in the 'Columbia Hills.' The mosaic shows an area of disturbed soil, nicknamed 'Gertrude Weise' by scientists, made by Spirit's stuck right front wheel.

The trench exposed a patch of nearly pure silica, with the composition of opal. It could have come from either a hot-spring environment or an environment called a fumarole, in which acidic, volcanic steam rises through cracks. Either way, its formation involved water, and on Earth, both of these types of settings teem with microbial life.

The image is presented here in false color that is used to bring out subtle differences in color.

Rhizobacterial community structure and function in a dryland agroecosystem

USDA-ARS?s Scientific Manuscript database

We recently discovered large populations of phenazine-producing (Phz+) Pseudomonas strains and concentrations of the antibiotic phenazine-1-carboxylic acid (PCA) of up to 1.6 µg g-1 of root plus rhizosphere soil on roots of non-irrigated cereals grown over more than a million hectares of the Columbi...

Macroscopic and molecular-scale assessment of soil lead contamination impacted by seasonal dove hunting activities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arai, Y.; Tappero, R.; Rick, A.R.

Environmental contamination of lead (Pb) in soils and sediments poses serious threats to human and ecological health. The objective of this study is to investigate the effect of seasonal dove sports hunting activities on Pb contamination in acid forest soils. A grid sampling method was used to investigate the spatial distribution of Pb contamination in surface soils. Soils were analyzed for total metal(loid) concentration and characterized for physicochemical properties and mineralogy. Adsorption isotherm experiments were also conducted to understand the reactivity and retention capacity of Pb(II) in soils. Finally, synchrotron-based X-ray microprobe and X-ray absorption spectroscopy were used to understandmore » the chemical speciation of Pb that controls the retention/release mechanisms of Pb in soils. There was no excessive accumulation of Pb at the site. However, the concentration of Pb in surface soils was greater than the background level (<16 mg kg{sup -1}). The contamination level of Pb was as high as 67 mg kg{sup -1} near a patch of corn field where lime was frequently applied. A microfocused X-ray microprobe analysis showed the presence of Pb pellet fragments that predominantly contain oxidized Pb(II), suggesting that oxidative dissolution was occurring in soils. Dissolved Pb(II) can be readily retained in soils up to {approx}3,600 mg kg{sup -1} via inner-sphere and outer-sphere surface complexation on carbon and aluminol functional groups of soil components, suggesting that partitioning reactions control the concentration of Pb in soil solution. The fate of Pb is likely to be controlled by (1) oxidative dissolution process of Pb(0) pellets and (2) the release of outer-sphere and/or inner-sphere Pb surface complexes in humic substances and aluminosilicate/Al oxyhydroxides. Although no remedial actions are immediately required, the long-term accumulation of Pb in soils should be carefully monitored in protecting ecosystem and water quality at the dove hunting field.« less

Soil nitrous oxide emissions after deposition of dairy cow excreta in eastern Canada.

PubMed

Rochette, Philippe; Chantigny, Martin H; Ziadi, Noura; Angers, Denis A; Bélanger, Gilles; Charbonneau, Édith; Pellerin, Doris; Liang, Chang; Bertrand, Normand

2014-05-01

Urine and dung deposited by grazing dairy cows are a major source of nitrous oxide (NO), a potent greenhouse gas that contributes to stratospheric ozone depletion. In this study, we quantified the emissions of NO after deposition of dairy cow excreta onto two grassland sites with contrasting soil types in eastern Canada. Our objectives were to determine the impact of excreta type, urine-N rate, time of the year, and soil type on annual NO emissions. Emissions were monitored on sandy loam and clay soils after spring, summer, and fall urine (5 and 10 g N patch) and dung (1.75 kg fresh weight dung) applications to perennial grasses in two successive years. The mean NO emission factor (EF) for urine was 1.09% of applied N in the clay soil and 0.31% in the sandy loam soil, estimates much smaller than the default Intergovernmental Panel on Climate Change (IPCC) default value for total excreta N (2%). Despite variations in urine composition and in climatic conditions, these soil-specific EFs were similar for the two urine-N application rates. The time of the year when urine was applied had no impact on emissions from the sandy loam soil, but greater EFs were observed after summer (1.59%) than spring (1.14%) and fall (0.55%) applications in the clay soil. Dung deposition impact on NO emission was smaller than that of urine, with a mean EF of 0.15% in the sandy loam soil and 0.08% in the clay soil. Our results suggest (i) that the IPCC default EF overestimates NO emissions from grazing cattle excreta in eastern Canada by a factor of 4.3 and (ii) that a region-specific inventory methodology should account for soil type and should use specific EFs for urine and dung. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Actin filament bundling by fimbrin is important for endocytosis, cytokinesis, and polarization in fission yeast.

PubMed

Skau, Colleen T; Courson, David S; Bestul, Andrew J; Winkelman, Jonathan D; Rock, Ronald S; Sirotkin, Vladimir; Kovar, David R

2011-07-29

Through the coordinated action of diverse actin-binding proteins, cells simultaneously assemble actin filaments with distinct architectures and dynamics to drive different processes. Actin filament cross-linking proteins organize filaments into higher order networks, although the requirement of cross-linking activity in cells has largely been assumed rather than directly tested. Fission yeast Schizosaccharomyces pombe assembles actin into three discrete structures: endocytic actin patches, polarizing actin cables, and the cytokinetic contractile ring. The fission yeast filament cross-linker fimbrin Fim1 primarily localizes to Arp2/3 complex-nucleated branched filaments of the actin patch and by a lesser amount to bundles of linear antiparallel filaments in the contractile ring. It is unclear whether Fim1 associates with bundles of parallel filaments in actin cables. We previously discovered that a principal role of Fim1 is to control localization of tropomyosin Cdc8, thereby facilitating cofilin-mediated filament turnover. Therefore, we hypothesized that the bundling ability of Fim1 is dispensable for actin patches but is important for the contractile ring and possibly actin cables. By directly visualizing actin filament assembly using total internal reflection fluorescence microscopy, we determined that Fim1 bundles filaments in both parallel and antiparallel orientations and efficiently bundles Arp2/3 complex-branched filaments in the absence but not the presence of actin capping protein. Examination of cells exclusively expressing a truncated version of Fim1 that can bind but not bundle actin filaments revealed that bundling activity of Fim1 is in fact important for all three actin structures. Therefore, fimbrin Fim1 has diverse roles as both a filament "gatekeeper" and as a filament cross-linker.

Environmental condition assessment of US military installations using GIS based spatial multi-criteria decision analysis.

PubMed

Singer, Steve; Wang, Guangxing; Howard, Heidi; Anderson, Alan

2012-08-01

Environment functions in various aspects including soil and water conservation, biodiversity and habitats, and landscape aesthetics. Comprehensive assessment of environmental condition is thus a great challenge. The issues include how to assess individual environmental components such as landscape aesthetics and integrate them into an indicator that can comprehensively quantify environmental condition. In this study, a geographic information systems based spatial multi-criteria decision analysis was used to integrate environmental variables and create the indicator. This approach was applied to Fort Riley Military installation in which land condition and its dynamics due to military training activities were assessed. The indicator was derived by integrating soil erosion, water quality, landscape fragmentation, landscape aesthetics, and noise based on the weights from the experts by assessing and ranking the environmental variables in terms of their importance. The results showed that landscape level indicator well quantified the overall environmental condition and its dynamics, while the indicator at level of patch that is defined as a homogeneous area that is different from its surroundings detailed the spatiotemporal variability of environmental condition. The environmental condition was mostly determined by soil erosion, then landscape fragmentation, water quality, landscape aesthetics, and noise. Overall, environmental condition at both landscape and patch levels greatly varied depending on the degree of ground and canopy disturbance and their spatial patterns due to military training activities and being related to slope. It was also determined the environment itself could be recovered quickly once military training was halt or reduced. Thus, this study provided an effective tool for the army land managers to monitor environmental dynamics and plan military training activities. Its limitation lies at that the obtained values of the indicator vary and are subjective to the experts' knowledge and experience. Thus, further advancing this approach is needed by developing a scientific method to derive the weights of environmental variables.

Multivariate analysis of the geochemistry and mineralogy of soils along two continental-scale transects in North America

USGS Publications Warehouse

Drew, L.J.; Grunsky, E.C.; Sutphin, D.M.; Woodruff, L.G.

2010-01-01

Soils collected in 2004 along two North American continental-scale transects were subjected to geochemical and mineralogical analyses. In previous interpretations of these analyses, data were expressed in weight percent and parts per million, and thus were subject to the effect of the constant-sum phenomenon. In a new approach to the data, this effect was removed by using centered log-ratio transformations to 'open' the mineralogical and geochemical arrays. Multivariate analyses, including principal component and linear discriminant analyses, of the centered log-ratio data reveal the effects of soil-forming processes, including soil parent material, weathering, and soil age, at the continental-scale of the data arrays that were not readily apparent in the more conventionally presented data. Linear discriminant analysis of the data arrays indicates that the majority of the soil samples collected along the transects can be more successfully classified with Level 1 ecological regional-scale classification by the soil geochemistry than soil mineralogy. A primary objective of this study is to discover and describe, in a parsimonious way, geochemical processes that are both independent and inter-dependent and manifested through compositional data including estimates of the elements and corresponding mineralogy. ?? 2010.

Soil chemistry changes beneath decomposing cadavers over a one-year period.

PubMed

Szelecz, Ildikó; Koenig, Isabelle; Seppey, Christophe V W; Le Bayon, Renée-Claire; Mitchell, Edward A D

2018-05-01

Decomposing vertebrate cadavers release large, localized inputs of nutrients. These temporally limited resource patches affect nutrient cycling and soil organisms. The impact of decomposing cadavers on soil chemistry is relevant to soil biology, as a natural disturbance, and forensic science, to estimate the postmortem interval. However, cadaver impacts on soils are rarely studied, making it difficult to identify common patterns. We investigated the effects of decomposing pig cadavers (Sus scrofa domesticus) on soil chemistry (pH, ammonium, nitrate, nitrogen, phosphorous, potassium and carbon) over a one-year period in a spruce-dominant forest. Four treatments were applied, each with five replicates: two treatments including pig cadavers (placed on the ground and hung one metre above ground) and two controls (bare soil and bags filled with soil placed on the ground i.e. "fake pig" treatment). In the first two months (15-59 days after the start of the experiment), cadavers caused significant increases of ammonium, nitrogen, phosphorous and potassium (p<0.05) whereas nitrate significantly increased towards the end of the study (263-367 days; p<0.05). Soil pH increased significantly at first and then decreased significantly at the end of the experiment. After one year, some markers returned to basal levels (i.e. not significantly different from control plots), whereas others were still significantly different. Based on these response patterns and in comparison with previous studies, we define three categories of chemical markers that may have the potential to date the time since death: early peak markers (EPM), late peak markers (LPM) and late decrease markers (LDM). The marker categories will enhance our understanding of soil processes and can be highly useful when changes in soil chemistry are related to changes in the composition of soil organism communities. For actual casework further studies and more data are necessary to refine the marker categories along a more precise timeline and to develop a method that can be used in court. Copyright © 2018 Elsevier B.V. All rights reserved.

Soil Landscape Pattern Changes in Response to Rural Anthropogenic Activity across Tiaoxi Watershed, China

PubMed Central

Xiao, Rui; Jiang, Diwei; Christakos, George; Fei, Xufeng; Wu, Jiaping

2016-01-01

Soil sealing (loss of soil resources due to extensive land covering for the purpose of house building, road construction etc.) and subsequent soil landscape pattern changes constitute typical environmental problems in many places worldwide. Previous studies concentrated on soil sealing in urbanized regions, whereas rural areas have not been given sufficient attention. Accordingly, this paper studies soil landscape pattern dynamics (i.e., landscape pattern changes in response to rural anthropogenic activities) in the Tiaoxi watershed (Zhejiang province, eastern China), in which surface sealing is by far the predominant component of human forcing with respect to environmental change. A novel approach of quantifying the impacts of rural anthropogenic activities on soil resources is presented. Specifically, quantitative relationships were derived between five soil landscape pattern metrics (patch density, edge density, shape index, Shannon’s diversity index and aggregation index) and three rural anthropogenic activity indicators (anthropogenic activity intensity, distance to towns, and distance to roads) at two landscape block scales (3 and 5 km) between 1985 and 2010. The results showed that the Tiaoxi watershed experienced extensive rural settlement expansion and high rates of soil sealing. Soil landscapes became more fragmented, more irregular, more isolated, and less diverse. Relationships between soil landscape pattern changes and rural anthropogenic activities differed with the scale (spatial and temporal) and variable considered. In particular, the anthropogenic activity intensity was found to be the most important indicator explaining social development intensity, whereas the other two proximity indicators had a significant impact at certain temporal interval. In combination with scale effects, spatial dependency (correlation) was shown to play a key role that should be carefully taken into consideration in any relevant environmental study. Overall, the findings of this work suggest that soil sealing can be a critical human forcing issue with considerable consequences deserving serious attention by the experts, the public and the government alike. PMID:27832167

Soil Landscape Pattern Changes in Response to Rural Anthropogenic Activity across Tiaoxi Watershed, China.

PubMed

Xiao, Rui; Jiang, Diwei; Christakos, George; Fei, Xufeng; Wu, Jiaping

2016-01-01

Soil sealing (loss of soil resources due to extensive land covering for the purpose of house building, road construction etc.) and subsequent soil landscape pattern changes constitute typical environmental problems in many places worldwide. Previous studies concentrated on soil sealing in urbanized regions, whereas rural areas have not been given sufficient attention. Accordingly, this paper studies soil landscape pattern dynamics (i.e., landscape pattern changes in response to rural anthropogenic activities) in the Tiaoxi watershed (Zhejiang province, eastern China), in which surface sealing is by far the predominant component of human forcing with respect to environmental change. A novel approach of quantifying the impacts of rural anthropogenic activities on soil resources is presented. Specifically, quantitative relationships were derived between five soil landscape pattern metrics (patch density, edge density, shape index, Shannon's diversity index and aggregation index) and three rural anthropogenic activity indicators (anthropogenic activity intensity, distance to towns, and distance to roads) at two landscape block scales (3 and 5 km) between 1985 and 2010. The results showed that the Tiaoxi watershed experienced extensive rural settlement expansion and high rates of soil sealing. Soil landscapes became more fragmented, more irregular, more isolated, and less diverse. Relationships between soil landscape pattern changes and rural anthropogenic activities differed with the scale (spatial and temporal) and variable considered. In particular, the anthropogenic activity intensity was found to be the most important indicator explaining social development intensity, whereas the other two proximity indicators had a significant impact at certain temporal interval. In combination with scale effects, spatial dependency (correlation) was shown to play a key role that should be carefully taken into consideration in any relevant environmental study. Overall, the findings of this work suggest that soil sealing can be a critical human forcing issue with considerable consequences deserving serious attention by the experts, the public and the government alike.

Hydrothermal vent fields discovered in the southern Gulf of California clarify role of habitat in augmenting regional diversity

PubMed Central

Johnson, Shannon; Tunnicliffe, Verena; Caress, David; Clague, David; Escobar, Elva; Lundsten, Lonny; Paduan, Jennifer B.; Rouse, Greg; Salcedo, Diana L.; Soto, Luis A.; Zierenberg, Robert; Vrijenhoek, Robert

2017-01-01

Hydrothermal vent communities are distributed along mid-ocean spreading ridges as isolated patches. While distance is a key factor influencing connectivity among sites, habitat characteristics are also critical. The Pescadero Basin (PB) and Alarcón Rise (AR) vent fields, recently discovered in the southern Gulf of California, are bounded by previously known vent localities (e.g. Guaymas Basin and 21° N East Pacific Rise); yet, the newly discovered vents differ markedly in substrata and vent fluid attributes. Out of 116 macrofaunal species observed or collected, only three species are shared among all four vent fields, while 73 occur at only one locality. Foundation species at basalt-hosted sulfide chimneys on the AR differ from the functional equivalents inhabiting sediment-hosted carbonate chimneys in the PB, only 75 km away. The dominant species of symbiont-hosting tubeworms and clams, and peripheral suspension-feeding taxa, differ between the sites. Notably, the PB vents host a limited and specialized fauna in which 17 of 26 species are unknown at other regional vents and many are new species. Rare sightings and captured larvae of the ‘missing’ species revealed that dispersal limitation is not responsible for differences in community composition at the neighbouring vent localities. Instead, larval recruitment-limiting habitat suitability probably favours species differentially. As scenarios develop to design conservation strategies around mining of seafloor sulfide deposits, these results illustrate that models encompassing habitat characteristics are needed to predict metacommunity structure. PMID:28724734

Hydrothermal vent fields discovered in the southern Gulf of California clarify role of habitat in augmenting regional diversity.

PubMed

Goffredi, Shana K; Johnson, Shannon; Tunnicliffe, Verena; Caress, David; Clague, David; Escobar, Elva; Lundsten, Lonny; Paduan, Jennifer B; Rouse, Greg; Salcedo, Diana L; Soto, Luis A; Spelz-Madero, Ronald; Zierenberg, Robert; Vrijenhoek, Robert

2017-07-26

Hydrothermal vent communities are distributed along mid-ocean spreading ridges as isolated patches. While distance is a key factor influencing connectivity among sites, habitat characteristics are also critical. The Pescadero Basin (PB) and Alarcón Rise (AR) vent fields, recently discovered in the southern Gulf of California, are bounded by previously known vent localities (e.g. Guaymas Basin and 21° N East Pacific Rise); yet, the newly discovered vents differ markedly in substrata and vent fluid attributes. Out of 116 macrofaunal species observed or collected, only three species are shared among all four vent fields, while 73 occur at only one locality. Foundation species at basalt-hosted sulfide chimneys on the AR differ from the functional equivalents inhabiting sediment-hosted carbonate chimneys in the PB, only 75 km away. The dominant species of symbiont-hosting tubeworms and clams, and peripheral suspension-feeding taxa, differ between the sites. Notably, the PB vents host a limited and specialized fauna in which 17 of 26 species are unknown at other regional vents and many are new species. Rare sightings and captured larvae of the 'missing' species revealed that dispersal limitation is not responsible for differences in community composition at the neighbouring vent localities. Instead, larval recruitment-limiting habitat suitability probably favours species differentially. As scenarios develop to design conservation strategies around mining of seafloor sulfide deposits, these results illustrate that models encompassing habitat characteristics are needed to predict metacommunity structure. © 2017 The Authors.

Shock-like haemodynamic responses induced in the primary visual cortex by moving visual stimuli

PubMed Central

Robinson, P. A.

2016-01-01

It is shown that recently discovered haemodynamic waves can form shock-like fronts when driven by stimuli that excite the cortex in a patch that moves faster than the haemodynamic wave velocity. If stimuli are chosen in order to induce shock-like behaviour, the resulting blood oxygen level-dependent (BOLD) response is enhanced, thereby improving the signal to noise ratio of measurements made with functional magnetic resonance imaging. A spatio-temporal haemodynamic model is extended to calculate the BOLD response and determine the main properties of waves induced by moving stimuli. From this, the optimal conditions for stimulating shock-like responses are determined, and ways of inducing these responses in experiments are demonstrated in a pilot study. PMID:27974572

Pipeline surveillance

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1976-03-01

Each week, pilots of Michigan Wisconsin Pipe Line Co.'s aerial patrol fly over the entire 12,000 mi of the company's pipeline system to discover possible gas leaks and prevent accidental encroachment of pipeline right-of-way. (Leaks are uncommon, but as many as 10 potential trespassing incidents can occur along a route in a week.) Following the pipeline is facilitated by the warmth emitted by the line which affects the plant life directly above it. Gas leaks may be indicated by a patch of brown vegetation or by sediment brought to water surfaces by escaping gas bubbles. The 1- and 2-engine patrolmore » planes, which receive special permission from federal authorities to fly at low altitudes, undergo 100-h safety checks and frequent overhauls.« less

Relaxation of risk-sensitive behaviour of prey following disease-induced decline of an apex predator, the Tasmanian devil

PubMed Central

Hollings, Tracey; McCallum, Hamish; Kreger, Kaely; Mooney, Nick; Jones, Menna

2015-01-01

Apex predators structure ecosystems through lethal and non-lethal interactions with prey, and their global decline is causing loss of ecological function. Behavioural changes of prey are some of the most rapid responses to predator decline and may act as an early indicator of cascading effects. The Tasmanian devil (Sarcophilus harrisii), an apex predator, is undergoing progressive and extensive population decline, of more than 90% in long-diseased areas, caused by a novel disease. Time since local disease outbreak correlates with devil population declines and thus predation risk. We used hair traps and giving-up densities (GUDs) in food patches to test whether a major prey species of devils, the arboreal common brushtail possum (Trichosurus vulpecula), is responsive to the changing risk of predation when they forage on the ground. Possums spend more time on the ground, discover food patches faster and forage more to a lower GUD with increasing years since disease outbreak and greater devil population decline. Loss of top–down effects of devils with respect to predation risk was evident at 90% devil population decline, with possum behaviour indistinguishable from a devil-free island. Alternative predators may help to maintain risk-sensitive anti-predator behaviours in possums while devil populations remain low. PMID:26085584

Landmark-based deep multi-instance learning for brain disease diagnosis.

PubMed

Liu, Mingxia; Zhang, Jun; Adeli, Ehsan; Shen, Dinggang

2018-01-01

In conventional Magnetic Resonance (MR) image based methods, two stages are often involved to capture brain structural information for disease diagnosis, i.e., 1) manually partitioning each MR image into a number of regions-of-interest (ROIs), and 2) extracting pre-defined features from each ROI for diagnosis with a certain classifier. However, these pre-defined features often limit the performance of the diagnosis, due to challenges in 1) defining the ROIs and 2) extracting effective disease-related features. In this paper, we propose a landmark-based deep multi-instance learning (LDMIL) framework for brain disease diagnosis. Specifically, we first adopt a data-driven learning approach to discover disease-related anatomical landmarks in the brain MR images, along with their nearby image patches. Then, our LDMIL framework learns an end-to-end MR image classifier for capturing both the local structural information conveyed by image patches located by landmarks and the global structural information derived from all detected landmarks. We have evaluated our proposed framework on 1526 subjects from three public datasets (i.e., ADNI-1, ADNI-2, and MIRIAD), and the experimental results show that our framework can achieve superior performance over state-of-the-art approaches. Copyright © 2017 Elsevier B.V. All rights reserved.

Quantum coherence of biophotons and living systems.

PubMed

Bajpai, R P

2003-05-01

Coherence is a property of the description of the system in the classical framework in which the subunits of a system act in a cooperative manner. Coherence becomes classical if the agent causing cooperation is discernible otherwise it is quantum coherence. Both stimulated and spontaneous biophoton signals show properties that can be attributed to the cooperative actions of many photon-emitting units. But the agents responsible for the cooperative actions of units have not been discovered so far. The stimulated signal decays with non-exponential character. It is system and situation specific and sensitive to many physiological and environmental factors. Its measurable holistic parameters are strength, shape, relative strengths of spectral components, and excitation curve. The spontaneous signal is non-decaying with the probabilities of detecting various number of photons to be neither normal nor Poisson. The detected probabilities in a signal of Parmelia tinctorum match with probabilities expected in a squeezed state of photons. It is speculated that an in vivo nucleic acid molecule is an assembly of intermittent quantum patches that emit biophoton in quantum transitions. The distributions of quantum patches and their lifetimes determine the holistic features of biophoton signals, so that the coherence of biophotons is merely a manifestation of the coherence of living systems.

Exposed water ice discovered near the south pole of Mars

USGS Publications Warehouse

Titus, T.N.; Kieffer, H.H.; Christensen, P.R.

2003-01-01

The Mars Odyssey Thermal Emission Imaging System (THEMIS) has discovered water ice exposed near the edge of Mars' southern perennial polar cap. The surface H2O ice was first observed by THEMIS as a region that was cooler than expected for dry soil at that latitude during the summer season. Diurnal and seasonal temperature trends derived from Mars Global Surveyor Thermal Emission Spectrometer observations indicate that there is H2O ice at the surface. Viking observations, and the few other relevant THEMIS observations, indicate that surface H2O ice may be widespread around and under the perennial CO2 cap.

Comparison of actual and seismologically inferred stress drops in dynamic models of microseismicity

NASA Astrophysics Data System (ADS)

Lin, Y. Y.; Lapusta, N.

2017-12-01

Estimating source parameters for small earthquakes is commonly based on either Brune or Madariaga source models. These models assume circular rupture that starts from the center of a fault and spreads axisymmetrically with a constant rupture speed. The resulting stress drops are moment-independent, with large scatter. However, more complex source behaviors are commonly discovered by finite-fault inversions for both large and small earthquakes, including directivity, heterogeneous slip, and non-circular shapes. Recent studies (Noda, Lapusta, and Kanamori, GJI, 2013; Kaneko and Shearer, GJI, 2014; JGR, 2015) have shown that slip heterogeneity and directivity can result in large discrepancies between the actual and estimated stress drops. We explore the relation between the actual and seismologically estimated stress drops for several types of numerically produced microearthquakes. For example, an asperity-type circular fault patch with increasing normal stress towards the middle of the patch, surrounded by a creeping region, is a potentially common microseismicity source. In such models, a number of events rupture the portion of the patch near its circumference, producing ring-like ruptures, before a patch-spanning event occurs. We calculate the far-field synthetic waveforms for our simulated sources and estimate their spectral properties. The distribution of corner frequencies over the focal sphere is markedly different for the ring-like sources compared to the Madariaga model. Furthermore, most waveforms for the ring-like sources are better fitted by a high-frequency fall-off rate different from the commonly assumed value of 2 (from the so-called omega-squared model), with the average value over the focal sphere being 1.5. The application of Brune- or Madariaga-type analysis to these sources results in the stress drops estimates different from the actual stress drops by a factor of up to 125 in the models we considered. We will report on our current studies of other types of seismic sources, such as repeating earthquakes and foreshock-like events, and whether the potentially realistic and common sources different from the standard Brune and Madariaga models can be identified from their focal spectral signatures and studied using a more tailored seismological analysis.

Large scale analysis of protein-binding cavities using self-organizing maps and wavelet-based surface patches to describe functional properties, selectivity discrimination, and putative cross-reactivity.

PubMed

Kupas, Katrin; Ultsch, Alfred; Klebe, Gerhard

2008-05-15

A new method to discover similar substructures in protein binding pockets, independently of sequence and folding patterns or secondary structure elements, is introduced. The solvent-accessible surface of a binding pocket, automatically detected as a depression on the protein surface, is divided into a set of surface patches. Each surface patch is characterized by its shape as well as by its physicochemical characteristics. Wavelets defined on surfaces are used for the description of the shape, as they have the great advantage of allowing a comparison at different resolutions. The number of coefficients to describe the wavelets can be chosen with respect to the size of the considered data set. The physicochemical characteristics of the patches are described by the assignment of the exposed amino acid residues to one or more of five different properties determinant for molecular recognition. A self-organizing neural network is used to project the high-dimensional feature vectors onto a two-dimensional layer of neurons, called a map. To find similarities between the binding pockets, in both geometrical and physicochemical features, a clustering of the projected feature vector is performed using an automatic distance- and density-based clustering algorithm. The method was validated with a small training data set of 109 binding cavities originating from a set of enzymes covering 12 different EC numbers. A second test data set of 1378 binding cavities, extracted from enzymes of 13 different EC numbers, was then used to prove the discriminating power of the algorithm and to demonstrate its applicability to large scale analyses. In all cases, members of the data set with the same EC number were placed into coherent regions on the map, with small distances between them. Different EC numbers are separated by large distances between the feature vectors. A third data set comprising three subfamilies of endopeptidases is used to demonstrate the ability of the algorithm to detect similar substructures between functionally related active sites. The algorithm can also be used to predict the function of novel proteins not considered in training data set. 2007 Wiley-Liss, Inc.

Plant Functional Traits Associated with Mycorrhizal Root Foraging in Arbuscular Mycorrhizal and Ectomycorrhizal Trees

NASA Astrophysics Data System (ADS)

Eissenstat, D. M.; Chen, W.; Cheng, L.; Liu, B.; Koide, R. T.; Guo, D.

2016-12-01

Root foraging for nutrient "hot spots" is a key strategy by which some plants maximize nutrient gain from their carbon investment in root and mycorrhizal hyphae. Foraging strategies may depend on costs of root construction, with thick roots generally costing more per unit length than thin roots. Investment in mycorrhizal hyphae, which are considerably thinner than roots, may represent an alternative strategy for cost-effective nutrient foraging, especially for thick-root species. Type of mycorrhiza may matter, as ectomycorrhizal (EM) fungi are more associated with longer hyphae and ability to mineralize organic matter than arbuscular mycorrhizal (AM) fungi. Among AM trees in both subtropical forests in SE China and in temperate forests in central Pennsylvania, USA, we found that tree species with thin roots proliferated their roots in soil patches enriched with mineral nutrients to a greater extent than species with thick roots. In addition, thick-root species were consistently colonized more heavily with mycorrhizal fungi than thin root species, although nutrient addition tended to diminish colonization. In a common garden in central Pennsylvania of both AM and EM tree species, we found that nutrient patches enriched with organic materials resulted in greater root and mycorrhizal fungal proliferation compared to those enriched with inorganic nutrients and that thick-root species proliferated more with their mycorrhizal fungi whereas thin-root species proliferated more with their roots. We further examined with many more species, patterns of root and mycorrhizal fungal proliferation in organic-nutrient-enriched patches. Foraging precision, or the extent that roots or mycorrhizal hyphae grew in the enriched patch relative to the unenriched patch, was related to both root thickness and type of mycorrhiza. In both AM and EM trees, thick-root species were not selective foragers of either their roots or hyphae. In thin-root species, there was strong selectivity in foraging with AM trees showing high precision in root foraging and EM trees showing high precision in mycorrhizal hyphal foraging. Collectively, these results indicate that we can improve our understanding of how trees forage for nutrients by considering both root morphology and type of mycorrhizas (AM or EM).

Can landscape memory affect vegetation recovery in drylands?

NASA Astrophysics Data System (ADS)

Baartman, Jantiene; Garcia Mayor, Angeles; Temme, Arnaud; Rietkerk, Max

2016-04-01

Dryland ecosystems are water-limited and therefore vegetation typically forms banded or patchy patterns with high vegetation cover, interspersed with bare soil areas. In these systems, a runoff-runon system is often observed with bare areas acting as sources and vegetation patches acting as sinks of water, sediment and other transported substances. These fragile ecosystems are easily disturbed by overgrazing, removing above-ground vegetation. To avoid desertification, vegetation recovery after a disturbance is crucial. This poster discusses the potential of 'landscape memory' to affect the vegetation recovery potential. Landscape memory, originating in geomorphology, is the concept that a landscape is the result of its past history, which it 'remembers' through imprints left in the landscape. For example, a past heavy rainstorm may leave an erosion gully. These imprints affect the landscape's contemporary functioning, for example through faster removal of water from the landscape. In dryland ecosystems vegetation is known to affect the soil properties of the soil they grow in, e.g. increasing porosity, infiltration, organic matter content and soil structure. After a disturbance of the banded ecosystem, e.g. by overgrazing, this pattern of soil properties - favourable for regrowth, stays in the landscape. However, removal of the above-ground vegetation also leads to longer runoff pathways and increased rill and gully erosion, which may hamper vegetation regrowth. I hypothesize that vegetation recovery after a disturbance, depends on the balance between these two contrasting types of landscape memory (i.e. favourable soil properties and erosion rills/gullies).

Quantifying Spatial Variability of Selected Soil Trace Elements and Their Scaling Relationships Using Multifractal Techniques

PubMed Central

Zhang, Fasheng; Yin, Guanghua; Wang, Zhenying; McLaughlin, Neil; Geng, Xiaoyuan; Liu, Zuoxin

2013-01-01

Multifractal techniques were utilized to quantify the spatial variability of selected soil trace elements and their scaling relationships in a 10.24-ha agricultural field in northeast China. 1024 soil samples were collected from the field and available Fe, Mn, Cu and Zn were measured in each sample. Descriptive results showed that Mn deficiencies were widespread throughout the field while Fe and Zn deficiencies tended to occur in patches. By estimating single multifractal spectra, we found that available Fe, Cu and Zn in the study soils exhibited high spatial variability and the existence of anomalies ([α(q)max−α(q)min]≥0.54), whereas available Mn had a relatively uniform distribution ([α(q)max−α(q)min]≈0.10). The joint multifractal spectra revealed that the strong positive relationships (r≥0.86, P<0.001) among available Fe, Cu and Zn were all valid across a wider range of scales and over the full range of data values, whereas available Mn was weakly related to available Fe and Zn (r≥0.18, P<0.01) but not related to available Cu (r = −0.03, P = 0.40). These results show that the variability and singularities of selected soil trace elements as well as their scaling relationships can be characterized by single and joint multifractal parameters. The findings presented in this study could be extended to predict selected soil trace elements at larger regional scales with the aid of geographic information systems. PMID:23874944

Assessment of the spatial distribution of soil microbial communities in patchy arid and semi-arid landscapes of the Negev Desert using combined PLFA and DGGE analyses.

PubMed

Ben-David, Eric A; Zaady, Eli; Sher, Yoni; Nejidat, Ali

2011-06-01

Arid and semi-arid ecosystems are often characterized by vegetation patchiness and variable availability of resources. Phospholipid fatty acid (PLFA) and 16S rRNA gene fragment analyses were used to compare the bulk soil microbial community structure at patchy arid and semi-arid landscapes. Multivariate analyses of the PLFA data and the 16S rRNA gene fragments were in agreement with each other, suggesting that the differences between bulk soil microbial communities were primarily related to shrub vs intershrub patches, irrespective of climatic or site differences. This suggests that the mere presence of a living shrub is the dominant driving factor for the differential adaptation of the microbial communities. Lipid markers suggested as indicators of Gram-positive bacteria were higher in soils under the shrub canopies, while markers suggested as indicators of cyanobacteria and anaerobic bacteria were elevated in the intershrub soils. Secondary differences between soil microbial communities were associated with intershrub characteristics and to a lesser extent with the shrub species. This study provides an insight into the multifaceted nature of the factors that shape the microbial community structure in patchy desert landscapes. It further suggests that these drivers not only act in concert but also in a way that is dependent on the aridity level. © 2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

A simplified model of precipitation enhancement over a heterogeneous surface

NASA Astrophysics Data System (ADS)

Cioni, Guido; Hohenegger, Cathy

2018-06-01

Soil moisture heterogeneities influence the onset of convection and subsequent evolution of precipitating systems through the triggering of mesoscale circulations. However, local evaporation also plays a role in determining precipitation amounts. Here we aim at disentangling the effect of advection and evaporation on precipitation over the course of a diurnal cycle by formulating a simple conceptual model. The derivation of the model is inspired by the results of simulations performed with a high-resolution (250 m) large eddy simulation model over a surface with varying degrees of heterogeneity. A key element of the conceptual model is the representation of precipitation as a weighted sum of advection and evaporation, each weighed by its own efficiency. The model is then used to isolate the main parameters that control precipitation variations over a spatially drier patch. It is found that these changes surprisingly do not depend on soil moisture itself but instead purely on parameters that describe the atmospheric initial state. The likelihood for enhanced precipitation over drier soils is discussed based on these parameters. Additional experiments are used to test the validity of the model.

Biogeochemistry and nitrogen cycling in an Arctic, volcanic ecosystem

NASA Astrophysics Data System (ADS)

Fogel, M. L.; Benning, L.; Conrad, P. G.; Eigenbrode, J.; Starke, V.

2007-12-01

As part of a study on Mars Analogue environments, the biogeochemistry of Sverrefjellet Volcano, Bocfjorden, Svalbard, was conducted and compared to surrounding glacial, thermal spring, and sedimentary environments. An understanding of how nitrogen might be distributed in a landscape that had extinct or very cold adapted, slow- growing extant organisms should be useful for detecting unknown life forms. From high elevations (900 m) to the base of the volcano (sea level), soil and rock ammonium concentrations were uniformly low, typically less than 1- 3 micrograms per gm of rock or soil. In weathered volcanic soils, reduced nitrogen concentrations were higher, and oxidized nitrogen concentrations lower. The opposite was found in a weathered Devonian sedimentary soil. Plants and lichens growing on volcanic soils have an unusually wide range in N isotopic compositions from -5 to +12‰, a range rarely measured in temperate ecosystems. Nitrogen contents and isotopic compositions of volcanic soils and rocks were strongly influenced by the presence or absence of terrestrial herbivores or marine avifauna with higher concentrations of N and elevated N isotopic compositions occurring as patches in areas immediately influenced by reindeer, Arctic fox ( Alopex lagopus), and marine birds. Because of the extreme conditions in this area, ephemeral deposition of herbivore feces results in a direct and immediate N pulses into the ecosystem. The lateral extent and distribution of marine- derived nitrogen was measured on a landscape scale surrounding an active fox den. Nitrogen was tracked from the bones of marine birds to soil to vegetation. Because of extreme cold, slow biological rates and nitrogen cycling, a mosaic of N patterns develops on the landscape scale.

The Mars Environmental Compatibility Assessment (MECA) Wet Chemistry Experiment on the Mars 2001 Lander

NASA Technical Reports Server (NTRS)

Grannan, S. M.; Frant, M.; Hecht, M. H.; Kounaves, S. P.; Manatt, K.; Meloy, T. P.; Pike, W. T.; Schubert, W.; West, S.; Wen, X.

1999-01-01

The Mars Environmental Compatibility Assessment (MECA) is an instrument suite that will fly on the Mars Surveyor 2001 Lander Spacecraft. MECA is sponsored by the Human Exploration and Development of Space (HEDS) program and will evaluate potential hazards that the dust and soil of Mars might present to astronauts and their equipment on a future human mission to Mars. Four elements constitute the integrated MECA payload: a microscopy station, patch plates, an electrometer, and the wet chemistry laboratory (WCL). The WCL consists of four identical cells, each of which will evaluate a sample of Martian soil in water to determine conductivity, pH, redox potential, dissolved C02 and 02 levels, and concentrations of many soluble ions including sodium, potassium, magnesium, calcium and the halides. In addition, cyclic voltammetry will be used to evaluate reversible and irreversible oxidants present in the water/soil solution. Anodic stripping voltammetry will be used to measure concentrations of trace metals including lead, copper, and cadmium at ppb levels. Voltammetry is a general electrochemical technique that involves controlling the potential of an electrode while simultaneously measuring the current flowing at that electrode. The WCL experiments will provide information on the corrosivity and reactivity of the Martian soil, as well as on soluble components of the soil which might be toxic to human explorers. They will also guide HEDS scientists in the development of high fidelity Martian soil simulants. In the process of acquiring information relevant to HEDS, the WCL will assess the chemical composition and properties of the salts present in the Martian soil.

Superfund Record of Decision (EPA Region 5): New Brighton/Arden Hills (TCAAP), Twin Cities Army Ammunition Plant, MN. (Seventh remedial action), August 1989

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1989-08-11

The New Brighton/Arden Hills site, also known as the Twin Cities Army Ammunition Plant (TCAAP) site, is in New Brighton, Minnesota. Past disposal of ammunition manufacturing wastes onsite resulted in contamination of ground water beneath and downgradient of the site. A total of 14 waste-disposal locations have been identified and assigned as Sites A through K. During remedial investigations at Site D, soil was discovered to be contaminated with PCBs and other organic and metal contaminants. A soil-gas extraction system was implemented to remove the source of volatile organic contamination and reduce the potential of migration to ground water. Inmore » implementing the soil gas extraction system, PCB-contaminated soil was removed, stockpiled near Site D, and sealed with a plastic-liner material. The interim remedy addresses the treatment and disposal of contaminated soil that is stockpiled near Site D. The primary contaminants of concern affecting the soil are VOCs including TCE and PCE, other organics including PCBs, and metals including arsenic and lead.« less

Vapor-phase exchange of perchloroethene between soil and plants

USGS Publications Warehouse

Struckhoff, G.C.; Burken, J.G.; Schumacher, J.G.

2005-01-01

Tree core concentrations of tetrachloroethylene (perchloroethene, PCE) at the Riverfront Superfund Site in New Haven, MO, were found to mimic the profile of soil phase concentrations. The observed soil-tree core relationship was stronger than that of groundwater PCE to tree core concentrations at the same site. Earlier research has shown a direct, linear relationship between tree core and groundwater concentrations of chlorinated solvents and other organics. Laboratory-scale experiments were performed to elucidate this phenomenon, including determining partitioning coefficients of PCE between plant tissues and air and between plant tissues and water, measured to be 8.1 and 49 L/kg, respectively. The direct relationship of soil to tree core PCE concentrations was hypothesized to be caused by diffusion between tree roots and the soil vapor phase in the subsurface. The central findings of this research are discovering the importance of subsurface vapor-phase transfer for VOCs and uncovering a direct relationship between soil vapor-phase chlorinated solvents and uptake rates that impact contaminant translocation from the subsurface and transfer into the atmosphere. ?? 2005 American Chemical Society.

Optimal mapping of site-specific multivariate soil properties.

PubMed

Burrough, P A; Swindell, J

1997-01-01

This paper demonstrates how geostatistics and fuzzy k-means classification can be used together to improve our practical understanding of crop yield-site response. Two aspects of soil are important for precision farming: (a) sensible classes for a given crop, and (b) their spatial variation. Local site classifications are more sensitive than general taxonomies and can be provided by the method of fuzzy k-means to transform a multivariate data set with i attributes measured at n sites into k overlapping classes; each site has a membership value mk for each class in the range 0-1. Soil variation is of interest when conditions vary over patches manageable by agricultural machinery. The spatial variation of each of the k classes can be analysed by computing the variograms of mk over the n sites. Memberships for each of the k classes can be mapped by ordinary kriging. Areas of class dominance and the transition zones between them can be identified by an inter-class confusion index; reducing the zones to boundaries gives crisp maps of dominant soil groups that can be used to guide precision farming equipment. Automation of the procedure is straightforward given sufficient data. Time variations in soil properties can be automatically incorporated in the computation of membership values. The procedures are illustrated with multi-year crop yield data collected from a 5 ha demonstration field at the Royal Agricultural College in Cirencester, UK.

Soil and fertilizer amendments and edge effects on the floral succession of pulverized fuel ash

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shaw, P.

2009-01-15

Plots of fresh pulverized fuel ash (PFA, an industrial waste) were inoculated with soils from existing PFA sites and fertilizers in a factorial design, then left unmanaged for 12 years during which time the floral development and soil chemistry were monitored annually. For the first 3 years, the site supported a sparse mix of chenopods (including the scarce Chenopodium glaucum) and halophytes. As salinity declined, ruderals, legumes, and grasses plus the fire-site moss Funaria hygrometrica colonized, followed by Festuca arundinacea grassland (NVC community MG12) and Hippophae rhamnoides scrub. Dactylorhiza incarnata (orchidacea) appeared after 7 years, but only in plots thatmore » had received soil from existing orchid colonies. Four years later, a larger second generation of Dactylorhiza appeared, but only in the central zone of the site where vegetation was thinnest. By year 12, the site was dominated by coarse grasses and scrub, with early successional species persisting only in the sparsely vegetated center, where nitrate levels were lowest. This edge effect is interpreted as centripetal encroachment, a process of potentially wider concern for the conservation of low-fertility habitat patches. Overall, seed bank inoculation seems to have introduced few but desirable species (D. incarnata, Pyrola rotundifolia, some halophytes, and annuals), whereas initial application of organic fertilizer had long-lasting ({ge} 10 years) effects on cover and soil composition.« less

Increasing Carbon Loss from Snow-Scoured Alpine Tundra in the Colorado Rocky Mountains: An Indicator of Climate Change?

NASA Astrophysics Data System (ADS)

Knowles, J. F.; Blanken, P.; Williams, M. W.; Lawrence, C. R.

2015-12-01

We used the eddy covariance method to continuously measure the net ecosystem exchange of carbon dioxide for seven years from a snow-scoured alpine tundra meadow on Niwot Ridge in Colorado, USA that may be underlain by sporadic permafrost. On average, the alpine tundra was a net annual source of 232 g C m-2 to the atmosphere, and the source strength of this ecosystem increased over the length of the seven year period due to both reduced carbon uptake during the growing season and increased respiration throughout the winter. To constrain the contribution of permafrost degradation to observed carbon emissions, we also measured the radiocarbon content of actively cycling, occluded, and mineral soil carbon pools across a meso-scale soil moisture and (possible) permafrost gradient within this meadow, as well as the seasonal radiocarbon content of soil respiration. These data suggest that wintertime soil respiration is limited to patches of wet meadow tundra that may be associated with permafrost. Furthermore, soil respiration from one of these locations indicates preferential turnover of a relatively slow cycling carbon pool during the winter. Given that summer air temperatures and positive degree days have been increasing on Niwot Ridge since the middle of the 20th century, this research suggests that an alpine tundra permafrost-respiration feedback to climate change, similar to that observed in arctic tundra ecosystems, may be currently underway.

Soil degradation level under particular annual rainfall at Jenawi District– Karanganyar, Indonesia

NASA Astrophysics Data System (ADS)

Herawati, A.; Suntoro; Widijanto, H.; Pusponegoro, I.; Sutopo, N. R.; Mujiyo

2018-03-01

The study of the climatic elements such as rainfall is vital for the sustainable development of agriculture at a region. The aims of the study were to evaluate the soil degradation based on the annual rainfall and to determine the key factors which responsible for the soil degradation at in Jenawi Sub-District. The mapping of soil degradation potency is an identification of initial soil condition to discover the potential of the land degradation. The mapping was done by overlaying the map of soil, slope, rainfall and land use with the standard procedures to obtain the value and status of Soil Degradation Potency (SDP). The result showed that SDP in Jenawi District categorized in very low (SDP I) 0.00 ha (0.00%); low (SDP II) 109.01 ha (2.57%); moderate (SDP III) 1,935.92 ha (45.63%); high (SDP IV) 1,959.54 ha (46.19%) and very high (SDP V) 238.08 ha (5.61%). The rainfall is the factor which has the strong correlation with the SDP (r = 0.65, P < 0.01, n = 306). The changes in the rainfall as the impact of climate change need to be anticipated to minimize soil degradation. The result can be adapted to the rainfall changes in various ways based on local soil-land characteristics.

Bacterial phylogeny structures soil resistomes across habitats

PubMed Central

Forsberg, Kevin J.; Patel, Sanket; Gibson, Molly K.; Lauber, Christian L.; Knight, Rob; Fierer, Noah; Dantas, Gautam

2014-01-01

Summary Ancient and diverse antibiotic resistance genes (ARGs) have previously been identified from soil1–3, including genes identical to those in human pathogens4. Despite the apparent overlap between soil and clinical resistomes4–6, factors influencing ARG composition in soil and their movement between genomes and habitats remain largely unknown3. General metagenome functions often correlate with the underlying structure of bacterial communities7–12. However, ARGs are hypothesized to be highly mobile4,5,13, prompting speculation that resistomes may not correlate with phylogenetic signatures or ecological divisions13,14. To investigate these relationships, we performed functional metagenomic selections for resistance to 18 antibiotics from 18 agricultural and grassland soils. The 2895 ARGs we discovered were predominantly novel, and represent all major resistance mechanisms15. We demonstrate that distinct soil types harbor distinct resistomes, and that nitrogen fertilizer amendments strongly influenced soil ARG content. Resistome composition also correlated with microbial phylogenetic and taxonomic structure, both across and within soil types. Consistent with this strong correlation, mobility elements syntenic with ARGs were rare in soil compared to sequenced pathogens, suggesting that ARGs in the soil may not transfer between bacteria as readily as is observed in the clinic. Together, our results indicate that bacterial community composition is the primary determinant of soil ARG content, challenging previous hypotheses that horizontal gene transfer effectively decouples resistomes from phylogeny13,14. PMID:24847883

Bacterial phylogeny structures soil resistomes across habitats

NASA Astrophysics Data System (ADS)

Forsberg, Kevin J.; Patel, Sanket; Gibson, Molly K.; Lauber, Christian L.; Knight, Rob; Fierer, Noah; Dantas, Gautam

2014-05-01

Ancient and diverse antibiotic resistance genes (ARGs) have previously been identified from soil, including genes identical to those in human pathogens. Despite the apparent overlap between soil and clinical resistomes, factors influencing ARG composition in soil and their movement between genomes and habitats remain largely unknown. General metagenome functions often correlate with the underlying structure of bacterial communities. However, ARGs are proposed to be highly mobile, prompting speculation that resistomes may not correlate with phylogenetic signatures or ecological divisions. To investigate these relationships, we performed functional metagenomic selections for resistance to 18 antibiotics from 18 agricultural and grassland soils. The 2,895 ARGs we discovered were mostly new, and represent all major resistance mechanisms. We demonstrate that distinct soil types harbour distinct resistomes, and that the addition of nitrogen fertilizer strongly influenced soil ARG content. Resistome composition also correlated with microbial phylogenetic and taxonomic structure, both across and within soil types. Consistent with this strong correlation, mobility elements (genes responsible for horizontal gene transfer between bacteria such as transposases and integrases) syntenic with ARGs were rare in soil by comparison with sequenced pathogens, suggesting that ARGs may not transfer between soil bacteria as readily as is observed between human pathogens. Together, our results indicate that bacterial community composition is the primary determinant of soil ARG content, challenging previous hypotheses that horizontal gene transfer effectively decouples resistomes from phylogeny.

The Effect of Restoration on Soil Respiration in an Urban Tidal Wetland in the Meadowlands, New Jersey

NASA Astrophysics Data System (ADS)

Schafer, K. V.; Kurepa, S.; Duman, T.; Scott, M.; Pechmann, I.; Vanderklein, D. W.

2017-12-01

The effect of wetland restoration on soil respiration in tidal brackish marshes has not been comprehensively studied. In New Jersey, common mitigation efforts come in the form of the removal of an invasive haplotype of Phragmites australis and replanting of native species, resulting in significant habitat disturbance. This study investigated the differences in soil respiration within and between areas covered with P. australis, Spartina alterniflora, and Spartina patens. We performed static chamber measurements of soil respiration using an infrared gas analyzer to measure CO2 fluxes in a natural site and a mitigated site in the Meadowlands of New Jersey. Daytime measurements were performed in 10 random locations in areas populated with each of the vegetation types, to represent the spatial heterogeneity of the wetland area, during summer 2017. Due to the nature of the wetland, vegetation had to be removed to uncover the soil. Prior to measuring exposed soil respiration, we therefore measured CO2 flux including the vegetation within the chamber, which allowed us to additionally calculate the respiration including the vegetation. Furthermore, we assessed direct respiration of green leaves with leaf gas exchange measurements. Combining these different methodologies and scales allow us to estimate the function of different components that contribute to total respiration from the wetland, and how they change spatially and temporally. Initial results showed that soil respiration in P. australis patches was much higher than in both Spartina species, however average vegetation respiration per unit mass was similar across all three. Vegetation respiration and soil respiration are of the same order of magnitude in all three species as well. Also, when respiration with and without vegetation was combined, P. australis showed a considerably higher flux.

Texture-contrast profile development across the prairie-forest ecotone in northern Minnesota, USA, and its relation to soil aggregation and clay dispersion.

NASA Astrophysics Data System (ADS)

Kasmerchak, C. S.; Mason, J. A.

2016-12-01

Along the prairie-forest ecotone, Alfisols with distinct clay-enriched B horizons are found under forest, established only within the past 4 ka, including outlying patches of prairie groves surrounded by prairie. Grassland soils only 5-10 km away from the vegetation boundary show much weaker texture-contrast. In order for clay to be dispersed it must first be released from aggregates upper horizons, which occurs when exposed top soil undergoes wetting and mechanical stress. The relationship between physiochemical soil characteristics and soil aggregation/clay dispersion is of particular interest in explaining texture-contrast development under forest. Soil samples were collected along a transect in northern Minnesota on gentle slopes in similar glacial sediment. Aggregate stability experiments show Mollisol A and B horizons have the most stable aggregates, while Alfisol E horizons have the weakest aggregates and disintegrate rapidly. This demonstrates the strong influence of OM and exchange chemistry on aggregation. Analysis of other physiochemical soil characteristics such as base saturation and pH follow a gradual decreasing eastward trend across the study sites, and do not abruptly change at the prairie-forest boundary like soil morphology does. Linear models show the strongest relationship between rapid aggregate disintegration and ECEC, although they only explain 47-50% of the variance. Higher surface charge enhances aggregation by allowing for greater potential of cation bridging between OM and clay particles. ECEC also represents multiple soil characteristics such as OC, clay, mineralogy, and carbonate presence, suggesting the relationship between aggregation stability and soil characteristics is not simple. Given the parent material consists of calcareous glacial sediment, abundant Ca2+ and Mg2+ from carbonates weathering also contributes to enhanced aggregation in upper horizons. Differences in the rates of bioturbation, most likely also contribute differences in soil morphology, although this was not explored in this research.

Soil Does Not Explain Monodominance in a Central African Tropical Forest

PubMed Central

Peh, Kelvin S. -H.; Sonké, Bonaventure; Lloyd, Jon; Quesada, Carlos A.; Lewis, Simon L.

2011-01-01

Background Soil characteristics have been hypothesised as one of the possible mechanisms leading to monodominance of Gilbertiodendron dewerei in some areas of Central Africa where higher-diversity forest would be expected. However, the differences in soil characteristics between the G. dewevrei-dominated forest and its adjacent mixed forest are still poorly understood. Here we present the soil characteristics of the G. dewevrei forest and quantify whether soil physical and chemical properties in this monodominant forest are significantly different from the adjacent mixed forest. Methodology/Principal Findings We sampled top soil (0–5, 5–10, 10–20, 20–30 cm) and subsoil (150–200 cm) using an augur in 6 × 1 ha areas of intact central Africa forest in SE Cameroon, three independent patches of G. dewevrei-dominated forest and three adjacent areas (450–800 m apart), all chosen to be topographically homogeneous. Analysis – subjected to Bonferroni correction procedure – revealed no significant differences between the monodominant and mixed forests in terms of soil texture, median particle size, bulk density, pH, carbon (C) content, nitrogen (N) content, C:N ratio, C:total NaOH-extractable P ratio and concentrations of labile phosphorous (P), inorganic NaOH-extractable P, total NaOH-extractable P, aluminium, barium, calcium, copper, iron, magnesium, manganese, molybdenum, nickel, potassium, selenium, silicon, sodium and zinc. Prior to Bonferroni correction procedure, there was a significant lower level of silicon concentration found in the monodominant than mixed forest deep soil; and a significant lower level of nickel concentration in the monodominant than mixed forest top soil. Nevertheless, these were likely to be the results of multiple tests of significance. Conclusions/Significance Our results do not provide clear evidence of soil mediation for the location of monodominant forests in relation to adjacent mixed forests. It is also likely that G. dewevrei does not influence soil chemistry in the monodominant forests. PMID:21347320

Soil does not explain monodominance in a Central African tropical forest.

PubMed

Peh, Kelvin S-H; Sonké, Bonaventure; Lloyd, Jon; Quesada, Carlos A; Lewis, Simon L

2011-02-10

Soil characteristics have been hypothesised as one of the possible mechanisms leading to monodominance of Gilbertiodendron dewerei in some areas of Central Africa where higher-diversity forest would be expected. However, the differences in soil characteristics between the G. dewevrei-dominated forest and its adjacent mixed forest are still poorly understood. Here we present the soil characteristics of the G. dewevrei forest and quantify whether soil physical and chemical properties in this monodominant forest are significantly different from the adjacent mixed forest. We sampled top soil (0-5, 5-10, 10-20, 20-30 cm) and subsoil (150-200 cm) using an augur in 6 × 1 ha areas of intact central Africa forest in SE Cameroon, three independent patches of G. dewevrei-dominated forest and three adjacent areas (450-800 m apart), all chosen to be topographically homogeneous. Analysis--subjected to Bonferroni correction procedure--revealed no significant differences between the monodominant and mixed forests in terms of soil texture, median particle size, bulk density, pH, carbon (C) content, nitrogen (N) content, C:N ratio, C:total NaOH-extractable P ratio and concentrations of labile phosphorous (P), inorganic NaOH-extractable P, total NaOH-extractable P, aluminium, barium, calcium, copper, iron, magnesium, manganese, molybdenum, nickel, potassium, selenium, silicon, sodium and zinc. Prior to Bonferroni correction procedure, there was a significant lower level of silicon concentration found in the monodominant than mixed forest deep soil; and a significant lower level of nickel concentration in the monodominant than mixed forest top soil. Nevertheless, these were likely to be the results of multiple tests of significance. Our results do not provide clear evidence of soil mediation for the location of monodominant forests in relation to adjacent mixed forests. It is also likely that G. dewevrei does not influence soil chemistry in the monodominant forests.

Rover's Wheel Churns Up Bright Martian Soil (Stereo)

NASA Technical Reports Server (NTRS)

2009-01-01

NASA's Mars Exploration Rover Spirit acquired this mosaic on the mission's 1,202nd Martian day, or sol (May 21, 2007), while investigating the area east of the elevated plateau known as 'Home Plate' in the 'Columbia Hills.' The mosaic shows an area of disturbed soil, nicknamed 'Gertrude Weise' by scientists, made by Spirit's stuck right front wheel.

The trench exposed a patch of nearly pure silica, with the composition of opal. It could have come from either a hot-spring environment or an environment called a fumarole, in which acidic, volcanic steam rises through cracks. Either way, its formation involved water, and on Earth, both of these types of settings teem with microbial life.

Multiple images taken with Spirit's panoramic camera are combined here into a stereo view that appears three-dimensional when seen through red-blue glasses, with the red lens on the left.

Aluminium and hydrogen ions inhibit a mechanosensory calcium-selective cation channel

NASA Technical Reports Server (NTRS)

Ding, J. P.; Pickard, B. G.

1993-01-01

The tension-dependent activity of mechanosensory calcium-selective cation channels in excised plasmalemmal patches from onion bulb scale epidermis is modulated by pH in the physiologically meaningful range between 4.5 and 7.2. It is rapidly lowered by lowering pH and rapidly raised by raising pH. Channel activity is effectively inhibited by low levels of aluminium ions and activity can be partially restored by washing for a few minutes. We suggest that under normal conditions the sensitivity of the mechanosensory channels to pH of the wall free space plays important roles in regulation of plant activities such as growth. We further suggest that, when levels of acid and aluminium ions in the soil solution are high, they might inhibit similar sensory channels in cells of the root tip, thus contributing critically to the acid soil syndrome.

Vegetation change alters soil profile δ15N values at the landscape scale in a subtropical savanna

NASA Astrophysics Data System (ADS)

Zhou, Y.; Mushinski, R. M.; Hyodo, A.; Wu, X. B.; Boutton, T. W.

2017-12-01

The assessment of spatial variation in soil δ15N could provide integrative insights on soil N cycling processes across multiple spatial scales. However, little is known about spatial patterns of δ15N within soil profiles in arid and semiarid ecosystems, especially those undergoing vegetation change with a distinct shift in dominance and/or functional type. We quantified how changes from grass to woody plant dominance altered spatial patterns of δ15N throughout a 1.2 m soil profile by collecting 320 spatially-specific soil cores in a 160 m × 100 m subtropical savanna landscape that has undergone encroachment by Prosopis glandulosa (an N2-fixer) during the past century. Leaf δ15N was comparable among different plant life-forms, while fine roots from woody species had significantly lower δ15N than herbaceous species across this landscape. Woody encroachment significantly decreased soil δ15N throughout the entire soil profile, and created horizontal spatial patterns of soil δ15N that strongly resembled the spatial distribution of woody patches and were evident within each depth increment. The lower soil δ15N values that characterized areas beneath woody canopies were mostly due to the encroaching woody species, especially the N2-fixer P. glandulosa, which delivered 15N-depleted organic matter via root turnover to soils along the profile. Soil δ15N increased with depth, reached maximum values at an intermediate depth, and decreased at greater depths. Higher δ15N values at intermediate soil depths were correlated with the presence of a subsurface clay-rich argillic horizon across this landscape which may favor more rapid rates of N-cycling processes that can cause N losses and 15N enrichment of the residual soil N. These results indicate that succession from grassland to woodland has altered spatial variation in soil δ15N across the landscape and to considerable depth, suggesting significant changes in the relative rates of N-inputs vs. N-losses in this subtropical system after vegetation change.

Impacts of Urban Sprawl on Soil Resources in the Changchun⁻Jilin Economic Zone, China, 2000⁻2015.

PubMed

Li, Xiaoyan; Yang, Limin; Ren, Yongxing; Li, Huiying; Wang, Zongming

2018-06-06

The Changchun⁻Jilin Economic Zone (CJEZ) is one of the most rapidly developing areas in Northeast China, as well as one of the famous golden maize belts in the world. This is a case study to assess the impacts of urban sprawl on soil resources using remote sensing imagery and geographic spatial analysis methods. The common urbanization intensity index (CUII), soil quality index, and soil landscape metrics were calculated to reflect urbanization and the response of soil resource. Results showed that the area of soil sealing changed from 112,460 ha in 2000 to 139,233 ha in 2015, and in the rural region, the area occupied by urbanization nearly kept balance with the area of rural residential expansion. Urban land increased by 26,767 ha at an annual rate of 3.23% from 2000 to 2015. All seven soil types were occupied during the urbanization process, among which black soil ranked the highest (18,560 ha) and accounted for 69.34% of the total occupied area. Soils of Grades I (3927 ha) and II (15,016 ha) were 64.75% of the total occupied soil areas. Urban land expanded in an irregular shape and a disordered way, which led to an increasing large patch index (LPI) and aggregation index (AI), and a decreasing edge density (ED) and Shannon’s diversity index (SHDI) of the soil landscape in the study area during 2000⁻2015. According to the geographically weighted regression (GWR) model analysis, the R ² between the CUII and soil landscape metrics decreased from the LPI and ED to SHDI and in turn to AI. The local R ² between SHDI, ED, and CUII showed a gradient structure from the inner city to peri-urban areas, in which larger values appeared with strongly intensive urbanization in urban fringes. Soil sealing induced by urbanization has become a significant factor threatening soil, the environment, and food security. How to coordinate regional development and ensure the sustainability of the multiple functions of soil is a problem that needs to be taken into account in the future development of the region.

Mapping Surface Cover Parameters Using Aggregation Rules and Remotely Sensed Cover Classes. Version 1.9

NASA Technical Reports Server (NTRS)

Arain, Altaf M.; Shuttleworth, W. James; Yang, Z-Liang; Michaud, Jene; Dolman, Johannes

1997-01-01

A coupled model, which combines the Biosphere-Atmosphere Transfer Scheme (BATS) with an advanced atmospheric boundary-layer model, was used to validate hypothetical aggregation rules for BATS-specific surface cover parameters. The model was initialized and tested with observations from the Anglo-Brazilian Amazonian Climate Observational Study and used to simulate surface fluxes for rain forest and pasture mixes at a site near Manaus in Brazil. The aggregation rules are shown to estimate parameters which give area-average surface fluxes similar to those calculated with explicit representation of forest and pasture patches for a range of meteorological and surface conditions relevant to this site, but the agreement deteriorates somewhat when there are large patch-to-patch differences in soil moisture. The aggregation rules, validated as above, were then applied to remotely sensed 1 km land cover data set to obtain grid-average values of BATS vegetation parameters for 2.8 deg x 2.8 deg and 1 deg x 1 deg grids within the conterminous United States. There are significant differences in key vegetation parameters (aerodynamic roughness length, albedo, leaf area index, and stomatal resistance) when aggregate parameters are compared to parameters for the single, dominant cover within the grid. However, the surface energy fluxes calculated by stand-alone BATS with the 2-year forcing, data from the International Satellite Land Surface Climatology Project (ISLSCP) CDROM were reasonably similar using aggregate-vegetation parameters and dominant-cover parameters, but there were some significant differences, particularly in the western USA.

Arctic Tundra Vegetation Functional Types Based on Photosynthetic Physiology and Optical Properties

NASA Technical Reports Server (NTRS)

Huemmrich, Karl F.; Gamon, John; Tweedie, Craig; Campbell, Petya K.; Landis, David R.; Middleton, Elizabeth M.

2013-01-01

Non-vascular plants (lichens and mosses) are significant components of tundra landscapes and may respond to climate change differently from vascular plants affecting ecosystem carbon balance. Remote sensing provides critical tools for monitoring plant cover types, as optical signals provide a way to scale from plot measurements to regional estimates of biophysical properties, for which spatial-temporal patterns may be analyzed. Gas exchange measurements were collected for pure patches of key vegetation functional types (lichens, mosses, and vascular plants) in sedge tundra at Barrow AK. These functional types were found to have three significantly different values of light use efficiency (LUE) with values of 0.013+/-0.001, 0.0018+/-0.0002, and 0.0012+/-0.0001 mol C/mol absorbed quanta for vascular plants, mosses and lichens, respectively. Discriminant analysis of the spectra reflectance of these patches identified five spectral bands that separated each of these vegetation functional types as well as nongreen material (bare soil, standing water, and dead leaves). These results were tested along a 100 m transect where midsummer spectral reflectance and vegetation coverage were measured at one meter intervals.

The lost micro-deserts of the Patuxent River using landscape history, insect and plant specimens, and field work to detect and define a unique community

USGS Publications Warehouse

Droege, S.; Davis, C.A.; Steiner, W.E.; =Mawdsley, J.

2009-01-01

Historical and recent records of both plants and insects are synthesized for uplands along the eastern edge of Maryland?s Patuxent River from the edge of the Piedmont south to Jug Bay. This strip is characterized by deep sandy soils found in the Evesboro and Galestown sandy loams soil series. Within this narrow strip there exists a unique flora and fauna adapted to open dry sandy soils and occurring in small remnant patches associated with old sand mining operations and scattered protected areas. We illustrate the uniqueness of these sites using four groups, vascular plants, tenebrionid beetles (Coleoptera: Tenebrionidae), tiger beetles (Coleoptera: Cicindelidae), and bees (Hymenoptera: Apoidea: Anthophila). Within each of these groups, rare species were detected whose populations were locally restricted to this soil type and whose nearest known populations were often hundreds of kilometers away. In addition to documenting the direct conservation importance of these small sandy openings along the Patuxent, we contrast the lack of any indication from vertebrate inventories that this region is unique. The combination of plant and insect inventories appears to be a better means of clarifying a site?s importance than does any survey of a single taxonomic group.

Arctic foxes as ecosystem engineers: increased soil nutrients lead to increased plant productivity on fox dens

NASA Astrophysics Data System (ADS)

Gharajehdaghipour, Tazarve; Roth, James D.; Fafard, Paul M.; Markham, John H.

2016-04-01

Top predators can provide fundamental ecosystem services such as nutrient cycling, and their impact can be even greater in environments with low nutrients and productivity, such as Arctic tundra. We estimated the effects of Arctic fox (Vulpes lagopus) denning on soil nutrient dynamics and vegetation production near Churchill, Manitoba in June and August 2014. Soils from fox dens contained higher nutrient levels in June (71% more inorganic nitrogen, 1195% more extractable phosphorous) and in August (242% more inorganic nitrogen, 191% more extractable phosphorous) than adjacent control sites. Inorganic nitrogen levels decreased from June to August on both dens and controls, whereas extractable phosphorous increased. Pup production the previous year, which should enhance nutrient deposition (from urine, feces, and decomposing prey), did not affect soil nutrient concentrations, suggesting the impact of Arctic foxes persists >1 year. Dens supported 2.8 times greater vegetation biomass in August, but δ15N values in sea lyme grass (Leymus mollis) were unaffected by denning. By concentrating nutrients on dens Arctic foxes enhance nutrient cycling as an ecosystem service and thus engineer Arctic ecosystems on local scales. The enhanced productivity in patches on the landscape could subsequently affect plant diversity and the dispersion of herbivores on the tundra.

Arctic foxes as ecosystem engineers: increased soil nutrients lead to increased plant productivity on fox dens.

PubMed

Gharajehdaghipour, Tazarve; Roth, James D; Fafard, Paul M; Markham, John H

2016-04-05

Top predators can provide fundamental ecosystem services such as nutrient cycling, and their impact can be even greater in environments with low nutrients and productivity, such as Arctic tundra. We estimated the effects of Arctic fox (Vulpes lagopus) denning on soil nutrient dynamics and vegetation production near Churchill, Manitoba in June and August 2014. Soils from fox dens contained higher nutrient levels in June (71% more inorganic nitrogen, 1195% more extractable phosphorous) and in August (242% more inorganic nitrogen, 191% more extractable phosphorous) than adjacent control sites. Inorganic nitrogen levels decreased from June to August on both dens and controls, whereas extractable phosphorous increased. Pup production the previous year, which should enhance nutrient deposition (from urine, feces, and decomposing prey), did not affect soil nutrient concentrations, suggesting the impact of Arctic foxes persists >1 year. Dens supported 2.8 times greater vegetation biomass in August, but δ(15)N values in sea lyme grass (Leymus mollis) were unaffected by denning. By concentrating nutrients on dens Arctic foxes enhance nutrient cycling as an ecosystem service and thus engineer Arctic ecosystems on local scales. The enhanced productivity in patches on the landscape could subsequently affect plant diversity and the dispersion of herbivores on the tundra.

Arctic foxes as ecosystem engineers: increased soil nutrients lead to increased plant productivity on fox dens

PubMed Central

Gharajehdaghipour, Tazarve; Roth, James D.; Fafard, Paul M.; Markham, John H.

2016-01-01

Top predators can provide fundamental ecosystem services such as nutrient cycling, and their impact can be even greater in environments with low nutrients and productivity, such as Arctic tundra. We estimated the effects of Arctic fox (Vulpes lagopus) denning on soil nutrient dynamics and vegetation production near Churchill, Manitoba in June and August 2014. Soils from fox dens contained higher nutrient levels in June (71% more inorganic nitrogen, 1195% more extractable phosphorous) and in August (242% more inorganic nitrogen, 191% more extractable phosphorous) than adjacent control sites. Inorganic nitrogen levels decreased from June to August on both dens and controls, whereas extractable phosphorous increased. Pup production the previous year, which should enhance nutrient deposition (from urine, feces, and decomposing prey), did not affect soil nutrient concentrations, suggesting the impact of Arctic foxes persists >1 year. Dens supported 2.8 times greater vegetation biomass in August, but δ15N values in sea lyme grass (Leymus mollis) were unaffected by denning. By concentrating nutrients on dens Arctic foxes enhance nutrient cycling as an ecosystem service and thus engineer Arctic ecosystems on local scales. The enhanced productivity in patches on the landscape could subsequently affect plant diversity and the dispersion of herbivores on the tundra. PMID:27045973

Impact of ultrasonic time on hot water elution of severely biodegraded heavy oil from weathered soils.

PubMed

Ji, Guodong; Sui, Xin

2010-07-15

An ultrasound-enhanced elution system employing water at a temperature of 70 degrees C was used to remedy weathered soils contaminated with severely biodegraded heavy oil (SBHO). The effect of varying the ultrasonic irradiation time from 0 to 1800 s on the elution of SBHO and three characteristic biomarkers (C(26-34) 17alpha 25-norhopanes, C(26-28) TAS, and C(27-29) MTAS) was analyzed using GC/MS, scanning electron microscopy (SEM), and X-ray diffraction (XRD). Elution of the three biomarkers was closely related to the carbon number of the marker. C(26-34) 17alpha 25-norhopanes and C(26-28) TAS species with higher carbon numbers and C(27-29) MTAS species with lower carbon numbers were more readily eluted using sonication times of 1080-1800 s, while smaller TAS homologs were more readily eluted after sonication times of 0-360 s. SEM images of samples treated for longer periods revealed larger "bare patches" on the soil surface. The results of XRD and energy spectroscopy experiments indicated that ultrasound irradiation for 1080 s negatively affected the deposition of CaCO(3), but overall improved the mineral and chemical compositions of treated soils and removal of SBHO. 2010 Elsevier B.V. All rights reserved.

Thermal and Evolved Gas Analysis of Magnesium Perchlorate: Implications for Perchlorates in Soils at the Mars Phoenix Landing Site

NASA Technical Reports Server (NTRS)

Ming, Douglas W.; Morris, R.V.; Lauer, H. V.; Sutter, B.; Golden, D.C.; Boynton, W.V.

2009-01-01

Perchlorate salts were discovered in the soils around the Phoenix landing site on the northern plains of Mars [1]. Perchlorate was detected by an ion selective electrode that is part of the MECA Wet Chemistry Laboratory (WCL). The discovery of a mass 32 fragment (likely 02) by the Thermal and Evolved-Gas Analyzer (TEGA) provided additional confirmation of a strong oxidizer in the soils around the landing site. The purpose of this paper is to evaluate the thermal and evolved gas behavior of perchlorate salts using TEGA-like laboratory testbed instruments. TEGA ovens were fabricated from high purity Ni. Hence, an additional objective of this paper is to determine the effects that Ni might have on the evolved gas behavior of perchlorate salts.

Moving from pixel to object scale when inverting radiative transfer models for quantitative estimation of biophysical variables in vegetation (Invited)

NASA Astrophysics Data System (ADS)

Atzberger, C.

2013-12-01

The robust and accurate retrieval of vegetation biophysical variables using RTM is seriously hampered by the ill-posedness of the inverse problem. The contribution presents our object-based inversion approach and evaluate it against measured data. The proposed method takes advantage of the fact that nearby pixels are generally more similar than those at a larger distance. For example, within a given vegetation patch, nearby pixels often share similar leaf angular distributions. This leads to spectral co-variations in the n-dimensional spectral features space, which can be used for regularization purposes. Using a set of leaf area index (LAI) measurements (n=26) acquired over alfalfa, sugar beet and garlic crops of the Barrax test site (Spain), it is demonstrated that the proposed regularization using neighbourhood information yields more accurate results compared to the traditional pixel-based inversion. Principle of the ill-posed inverse problem and the proposed solution illustrated in the red-nIR feature space using (PROSAIL). [A] spectral trajectory ('soil trajectory') obtained for one leaf angle (ALA) and one soil brightness (αsoil), when LAI varies between 0 and 10, [B] 'soil trajectories' for 5 soil brightness values and three leaf angles, [C] ill-posed inverse problem: different combinations of ALA × αsoil yield an identical crossing point, [D] object-based RTM inversion; only one 'soil trajectory' fits all nine pixelswithin a gliding (3×3) window. The black dots (plus the rectangle=central pixel) represent the hypothetical position of nine pixels within a 3×3 (gliding) window. Assuming that over short distances (× 1 pixel) variations in soil brightness can be neglected, the proposed object-based inversion searches for one common set of ALA × αsoil so that the resulting 'soil trajectory' best fits the nine measured pixels. Ground measured vs. retrieved LAI values for three crops. Left: proposed object-based approach. Right: pixel-based inversion

Soil Variable Permeability and Water Phase Change Dynamics in a Wastewater Spray Irrigation Agricultural System Located in a Seasonably Cold Climate

NASA Astrophysics Data System (ADS)

Darnault, C. J. G.; Daniel, T. J.; Billy, G.; Hopkins, I.; Guo, L.; Jin, Z.; Gall, H. E.; Lin, H.

2017-12-01

The permeability of the upper meter of soils in frozen conditions, commonly referred to as the active layer, can vary exponentially given the time of year. Variable moisture contents along with temperature, radiation, and slope angle of the soil surface can result in variable depths of frozen soils, which can cause the formation of low permeability ice lenses well into the spring thaw period. The wastewater irrigation site known as the "Living Filter" located in State College, PA has been in continuous operation since 1962. On average 5500 m3/day of wastewater is applied to the site annually, even in the winter months when average temperatures can dip as low as -7 °C during the month of January. The Living Filter is not permitted to discharge to surface water and is intended to recharge the Spring Creek basin that directly underlies the site, therefore runoff from the site is not permitted. We hypothesize that water infiltrates the upper meter of the subsurface during the winter in several different ways such as preferential pathways in the ice layer created by plant stems and weak patches of ice thawed by the warm wastewater. 2D conceptual models of the phase change between ice and water in the soil were created in order to predict soil permeability and its change in temperature. The 2D conceptual models can be correlated between observed soil moisture content and soil temperature data in order to validate the model given spray irrigation and weather patterns. By determining the permeability of the frozen soils, irrigation practices can be adjusted for the winter months so as to reduce the risk of any accidental wastewater runoff. The impact of this study will result in a better understanding of the multiphase dynamics of the active layer and their implication on soil hydrology at the Living Filter and other seasonally frozen sites.

Oracle Applications Patch Administration Tool (PAT) Beta Version

DOE Office of Scientific and Technical Information (OSTI.GOV)

2002-01-04

PAT is a Patch Administration Tool that provides analysis, tracking, and management of Oracle Application patches. This includes capabilities as outlined below: Patch Analysis & Management Tool Outline of capabilities: Administration Patch Data Maintenance -- track Oracle Application patches applied to what database instance & machine Patch Analysis capture text files (readme.txt and driver files) form comparison detail report comparison detail PL/SQL package comparison detail SQL scripts detail JSP module comparison detail Parse and load the current applptch.txt (10.7) or load patch data from Oracle Application database patch tables (11i) Display Analysis -- Compare patch to be applied with currentmore » Oracle Application installed Appl_top code versions Patch Detail Module comparison detail Analyze and display one Oracle Application module patch. Patch Management -- automatic queue and execution of patches Administration Parameter maintenance -- setting for directory structure of Oracle Application appl_top Validation data maintenance -- machine names and instances to patch Operation Patch Data Maintenance Schedule a patch (queue for later execution) Run a patch (queue for immediate execution) Review the patch logs Patch Management Reports« less

Impact of managed moorland burning on DOC concentrations in soil solutions and stream waters

NASA Astrophysics Data System (ADS)

Palmer, Sheila; Wearing, Catherine; Johnson, Kerrylyn; Holden, Joseph; Brown, Lee

2013-04-01

In the UK uplands, prescribed burning of moorland vegetation is a common practice to maintain suitable habitats for game birds. Many of these landscapes are in catchments covered by significant deposits of blanket peat (typically one metre or more in depth). There is growing interest in the effect of land management on the stability of these peatland carbon stores, and their contribution to dissolved and particulate organic carbon in surface waters (DOC and POC, respectively) and subsequent effects on stream biogeochemistry and ecology. Yet there are surprisingly few published catchment-scale studies on the effect of moorland burning on DOC and POC. As part of the EMBER project, stream chemistry data were collected approximately monthly in ten upland blanket peat catchments in the UK, five of which acted as controls and were not subject to burning. The other five catchments were subject to a history of prescribed burning, typically in small patches (300-900 m2) in rotations of 8-25 years. Soil solution DOC was also monitored at four depths at two intensively studied sites (one regularly burned and one control). At the two intensive sites, soil solution DOC was considerably higher at the burned site, particularly in surface solutions where concentrations in excess of 100 mg/L were recorded on several occasions (median 37 mg/L over 18 months). The high soil solution DOC concentrations at the burned site occurred in the most recently burned plots (less than 2 years prior to start of sampling) and the lowest DOC concentrations were observed in plots burned 15-25 years previously. On average, median stream DOC and POC concentrations were approximately 43% and 35% higher respectively in burned catchments relative to control catchments. All streams exhibited peak DOC in late summer/early autumn with higher peak DOC concentrations in burned catchments (20-66 mg/L) compared to control catchments (18-54 mg/L). During winter months, DOC concentrations were low in control catchments (typically less than 15 mg/L) but were highly variable in burned catchments (9-40 mg/L), implying some instability of peat carbon stores and/or fluctuation in source. The results offer strong evidence for an impact of burning on the delivery of DOC to streams, possibly through increased surface run-off from bare or partially vegetated patches.

HOW to Identify and Manage Ash Yellows in Forest Stands and Home Landscapes

Treesearch

Steven Katovich; Wayne A. Sinclair

1994-01-01

Ash yellows is a recently discovered disease that causes slow growth and decline of ash (Fraxinus) species. Ash yellows went undetected until the 1980's because its symptoms were not differentiated from those of decline caused by adverse environmental factors such as drought, shallow soils, flooding, or parasitism by opportunistic fungi. Current knowledge supports...

A novel assessment of the role of land-use and land-cover change in the global carbon cycle, using a new Dynamic Global Vegetation Model version of the CABLE land surface model

NASA Astrophysics Data System (ADS)

Haverd, Vanessa; Smith, Benjamin; Nieradzik, Lars; Briggs, Peter; Canadell, Josep

2017-04-01

In recent decades, terrestrial ecosystems have sequestered around 1.2 PgC y-1, an amount equivalent to 20% of fossil-fuel emissions. This land carbon flux is the net result of the impact of changing climate and CO2 on ecosystem productivity (CO2-climate driven land sink ) and deforestation, harvest and secondary forest regrowth (the land-use change (LUC) flux). The future trajectory of the land carbon flux is highly dependent upon the contributions of these processes to the net flux. However their contributions are highly uncertain, in part because the CO2-climate driven land sink and LUC components are often estimated independently, when in fact they are coupled. We provide a novel assessment of global land carbon fluxes (1800-2015) that integrates land-use effects with the effects of changing climate and CO2 on ecosystem productivity. For this, we use a new land-use enabled Dynamic Global Vegetation Model (DGVM) version of the CABLE land surface model, suitable for use in attributing changes in terrestrial carbon balance, and in predicting changes in vegetation cover and associated effects on land-atmosphere exchange. In this model, land-use-change is driven by prescribed gross land-use transitions and harvest areas, which are converted to changes in land-use area and transfer of carbon between pools (soil, litter, biomass, harvested wood products and cleared wood pools). A novel aspect is the treatment of secondary woody vegetation via the coupling between the land-use module and the POP (Populations Order Physiology) module for woody demography and disturbance-mediated landscape heterogeneity. Land-use transitions to and from secondary forest tiles modify the patch age distribution within secondary-vegetated tiles, in turn affecting biomass accumulation and turnover rates and hence the magnitude of the secondary forest sink. The resulting secondary forest patch age distribution also influences the magnitude of the secondary forest harvest and clearance fluxes, with oldest patches (high biomass) being preferentially harvested, and youngest patches (low biomass) being preferentially cleared. Our results, which agree well with the net land flux derived from the global carbon budget, are used for a process-attribution of the land carbon sink. Use of multiple constraints provides confidence in our process-attribution: we use observation-based data sets to evaluate predictions of global spatial distributions of vegetation cover, evaporation, gross primary production, biomass and soil carbon; interannual variability of the global terrestrial carbon sink; forest allometric relations and age-effects on net primary production.

A perfect storm: multiple stressors interact to drive postfire regeneration failure of lodgepole pine and Douglas-fir forests in Yellowstone

NASA Astrophysics Data System (ADS)

Hansen, W. D.; Braziunas, K. H.; Rammer, W.; Seidl, R.; Turner, M. G.

2017-12-01

Twenty-first century forests will experience increased stress as environmental conditions and disturbance regimes change. Whether forests retain their structure or transitions to alternate states, particularly when affected by multiple stressors, remains unresolved. Subalpine forests in Yellowstone National Park, WY experience large severe wildfires, and postfire-tree regeneration is necessary to assure resilience. Drying is projected, causing frequent larger wildfires that could reduce seed supply and drought that could constrain postfire-seedling establishment. We asked what combinations of warming-drying conditions, increased fire frequency, and increased burned-patch size cause postfire tree-regeneration failure in Yellowstone? We conducted a simulation experiment to identify combinations of fire frequency, fire size, postfire climate, substrate type, and elevation where lodgepole-pine and Douglas-fir regeneration failed. We expected postfire densities to be reduced if burned-patch sizes exceeded effective dispersal distance, sequential fires burned before trees reached reproductive maturity, or drought occurred after fire. We also expected regeneration failure only where multiple stressors occurred simultaneously at low elevation or on poor substrates.Douglas-fir stands were most vulnerable to regeneration failure. 98% of simulated Douglas-fir stands located in the middle of large burned patches failed to regenerate 30 years post fire. Lodgepole-pine stands in the middle of large burned patches failed to regenerate if they were also located at low elevations (93%) or at higher elevations on soils with poor water retention (73%). Stands of serotinous lodgepole (i.e., trees with closed cones that open when heated) also failed to regenerate if fire recurred before trees were reproductively mature (82%). Drought constrained postfire regeneration, yet, enhanced establishment due to release from cold-temperatures during mid-to-late 21st century often outweighed drought effects. Postfire tree regeneration arises from the interplay between multiple factors; some constraining establishment and others enhancing it. To understand 21st-century climate and fire effects on postfire tree regeneration and forest resilience, a reductionist approach is insufficient.

Does sheep selectivity along grazing paths negatively affect biological crusts and soil seed banks in arid shrublands? A case study in the Patagonian Monte, Argentina.

PubMed

Bertiller, M B; Ares, J O

2011-08-01

Domestic animals potentially affect the reproductive output of plants by direct removal of aboveground plant parts but also could alter the structure and fertility of the upper soil and the integrity of biological crusts through trampling. We asked whether sheep selectivity of plant patches along grazing paths could lead to negative changes in biological crusts and soil seed banks. We randomly selected ten floristically homogeneous vegetation stands distributed across an area (1250 ha) grazed by free ranging sheep. Vegetation stands were differently selected by sheep as estimated through sheep-collaring techniques combined with remote imagery mapping. At each stand, we extracted 15 paired cylindrical soil cores from biological crusts and from neighboring soil without crusts. We evaluated the crust cover enclosed in each core and incubated the soil samples at field capacity at alternating 10-18 °C during 24 months. We counted the emerged seedlings and identified them by species. Sheep selectivity along grazing paths was largest at mid-distances to the watering point of the paddock. Increasing sheep selectivity was associated with the reduction of the cover of biological crusts and the size and species number of the soil seed bank of preferred perennial grasses under biological crusts. The size of the soil seed bank of annual grasses was reduced with increasing sheep selectivity under both crust and no crust soil conditions. We did not detect changes in the soil seed banks of less- and non- preferred species (shrubs and forbs) related to sheep selectivity. Our findings highlight the negative effects of sheep selectivity on biological crusts and the soil seed bank of preferred plant species and the positive relationship between biological crusts and the size of the soil seed bank of perennial grasses. Accordingly, the state of conservation of biological crusts could be useful to assess the state of the soil seed banks of perennial grasses for monitoring, conservation and planning the sustainable management of grazing lands. Copyright © 2011 Elsevier Ltd. All rights reserved.

Proactive Security Testing and Fuzzing

NASA Astrophysics Data System (ADS)

Takanen, Ari

Software is bound to have security critical flaws, and no testing or code auditing can ensure that software is flaw-less. But software security testing requirements have improved radically during the past years, largely due to criticism from security conscious consumers and Enterprise customers. Whereas in the past, security flaws were taken for granted (and patches were quietly and humbly installed), they now are probably one of the most common reasons why people switch vendors or software providers. The maintenance costs from security updates often add to become one of the biggest cost items to large Enterprise users. Fortunately test automation techniques have also improved. Techniques like model-based testing (MBT) enable efficient generation of security tests that reach good confidence levels in discovering zero-day mistakes in software. This technique is called fuzzing.

Valentino's syndrome a perforated peptic ulcer mimicking acute appendicitis.

PubMed

Wijegoonewardene, Sandeep Indika; Stein, Joel; Cooke, David; Tien, Alan

2012-06-28

The authors present a case of a 30-year-old female who presented with symptoms and signs suggestive of appendicitis accompanied by elevated inflammatory markers. The patient was consented and taken to theatre for laparoscopic apendicectomy. At operation, the appendix was found to be normal but with surrounding turbid fluid in the right paracolic gutter and subhepatic space. On further inspection, a perforated pre pyloric ulcer was discovered. This was managed laparoscopically with a peritoneal lavage and falciform ligament patch repair. The patient made a good recovery and was discharged 2 days later. At 6 week follow-up the patient had an upper gastrointestinal (GI) endoscopy which showed complete healing of the ulcer. At 6 week follow-up the patient had an upper GI endoscopy which showed complete healing of the ulcer.

Molecular mechanisms controlling pavement cell shape in Arabidopsis leaves.

PubMed

Qian, Pingping; Hou, Suiwen; Guo, Guangqin

2009-08-01

Pavement cells have an interlocking jigsaw puzzle-shaped leaf surface pattern. Twenty-three genes involved in the pavement cell morphogenesis were discovered until now. The mutations of these genes through various means lead to pavement cell shape defects, such as loss or lack of interdigitation, the reduction of lobing, gaps between lobe and neck regions in pavement cells, and distorted trichomes. These phenotypes are affected by the organization of microtubules and microfilaments. Microtubule bands are considered corresponding with the neck regions of the cell, while lobe formation depends on patches of microfilaments. The pathway of Rho of plant (ROP) GTPase signaling cascades regulates overall activity of the cytoskeleton in pavement cells. Some other proteins, in addition to the ROPs, SCAR/WAVE, and ARP2/3 complexes, are also involved in the pavement cell morphogenesis.

Development and hydrology of biological soil crusts -- first results from a surface inoculation experiment

NASA Astrophysics Data System (ADS)

Mykhailova, Larysa; Raab, Thomas; Gypser, Stella; Fischer, Thomas

2016-04-01

Representing a set of various micro-biocoenoses, biocrusts often reside in adjacent patches, which not necessarily relate to structural elements of the habitat, like (micro-) topography or vegetational patterns. Such biocrust patches may become more stable through the formation of mutually dependent ecohydrological regimes. For example, algal patches inhibiting infiltration and generating runoff alternate with runoff-receiving moss patches possessing high water holding capacities. Here, we preliminarily report on a lysimeter field experiment where natural biocrust isolates were used for surface inoculation to (I) prove stochastic vs. deterministic biocrust development and (II) to quantitatively relate biocrust development to soil hydrology. Lysimeter sand was collected from 3-4 m below surface at natural dune outcrops in south-eastern Brandenburg, Germany (Glashütte (GLA) and Neuer Lugteich (LUG)), where biocrust samples were collected at the respective dune bases. The lysimeters were designed to prevent runoff. In a completely randomized full-factorial design, three factors were considered. (A) Inocolum in three treatments (bare control, mosses, algae), (B) mineral substrate texture in two treatments (GLA: 55% and LUG: 79% particles >630 μm), and (C) surface compaction in two treatments (control, 41.5 kN m-2 for 30 seconds). The samples were kept dry and re-moistened to -60 hPa two days before inoculation. After a species inventory, the inoculate was isolated by gently washing off sand particles from the biocrust samples. Algal/lichen crusts were dominated by Zygogonium ericetorum and Cladonia sp. at both sites. All moss crusts were dominated by Polytrichum piliferum and Ceratodon purpureus, whereas Brachythecium albicans was present at GLA only. 20 g of homogenized moist inoculate were spread over the surface of each lysimeter (Ø 19 cm, 22 cm depth). We performed autochthonous inoculation, i.e. biocrust isolates collected from GLA were used for inoculation of GLA substrate etc. The experiment started at 12.02.2015 and was located at an open area in the vicinity of a meteorological station, where all relevant for HYDRUS modeling data, as well as global radiation have been recorded every 10 min. Crust development was monitored by non-destructive NDVI imaging and a per lysimeter determination of the areal share of biocrust developmental stages: mineral surface (NDVI ≤ 0), BSC1 (0 < NDVI ≤ 0.15), BSC2 (0.15 < NDVI ≤ 0.40) and BSC3 (NDVI > 0.40). The general water balance equation and the amount of lysimeter leachate were used to determine evaporation and changes in water stocks by regular weighing. Biomass growth was inhibited in summer compared to autumn, where mosses developed faster than algae. Finer grained substrate promoted biocrust growth. Evapotranspiration increased with biomass development, presumably because the amount of water held close to the surface increased with biomass. It can be expected that this effect strengthens with increasing amounts of silt and clay. Biodiversity studies are pending, but incipient biocrust growth in the controls points to atmogenic superinfection. So far, it can be concluded that availability of water, depending on both precipitation and substrate texture, were the driving factors of biocrust development. Apart from runoff losses in hillslope conditions, biocrusts are hypothesized to take advantage over their vascular competitors by preventing water infiltration into deeper soil through increased evapotranspiration.

Maintaining social cohesion is a more important determinant of patch residence time than maximizing food intake rate in a group-living primate, Japanese macaque (Macaca fuscata).

PubMed

Kazahari, Nobuko

2014-04-01

Animals have been assumed to employ an optimal foraging strategy (e.g., rate-maximizing strategy). In patchy food environments, intake rate within patches is positively correlated with patch quality, and declines as patches are depleted through consumption. This causes patch-leaving and determines patch residence time. In group-foraging situations, patch residence times are also affected by patch sharing. Optimal patch models for groups predict that patch residence times decrease as the number of co-feeding animals increases because of accelerated patch depletion. However, group members often depart patches without patch depletion, and their patch residence time deviates from patch models. It has been pointed out that patch residence time is also influenced by maintaining social proximity with others among group-living animals. In this study, the effects of maintaining social cohesion and that of rate-maximizing strategy on patch residence time were examined in Japanese macaques (Macaca fuscata). I hypothesized that foragers give up patches to remain in the proximity of their troop members. On the other hand, foragers may stay for a relatively long period when they do not have to abandon patches to follow the troop. In this study, intake rate and foraging effort (i.e., movement) did not change during patch residency. Macaques maintained their intake rate with only a little foraging effort. Therefore, the patches were assumed to be undepleted during patch residency. Further, patch residence time was affected by patch-leaving to maintain social proximity, but not by the intake rate. Macaques tended to stay in patches for short periods when they needed to give up patches for social proximity, and remained for long periods when they did not need to leave to keep social proximity. Patch-leaving and patch residence time that prioritize the maintenance of social cohesion may be a behavioral pattern in group-living primates.

Investigation of off-site airborne transport of lead from a superfund removal action site using lead isotope ratios and concentrations

USGS Publications Warehouse

Pribil, Michael J.; Maddaloni, Mark A.; Staiger, Kimberly; Wilson, Eric; Magriples, Nick; Ali, Mustafa; Santella, Dennis

2014-01-01

Lead (Pb) concentration and Pb isotopic composition of surface and subsurface soil samples were used to investigate the potential for off-site air transport of Pb from a former white Pb processing facility to neighboring residential homes in a six block area on Staten Island, NY. Surface and subsurface soil samples collected on the Jewett White Pb site were found to range from 1.122 to 1.138 for 206Pb/207Pb and 2.393 to 2.411 for 208Pb/207Pb. The off-site surface soil samples collected from residential backyards, train trestle, near site grass patches and background areas varied from 1.144 to 1.196 for 206Pb/207Pb and 2.427 to 2.464 for 208Pb/207Pb. Two soil samples collected along Richmond Terrace, where Jewett site soils accumulated after major rain events, varied from 1.136 to 1.147 for 206Pb/207Pb and 2.407 to 2.419 for 208Pb/207Pb. Lead concentration for on-site surface soil samples ranged from 450 to 8000 ug/g, on-site subsurface soil samples ranged from 90,000 to 240,000 ug/g and off-site samples varied from 380 to 3500 ug/g. Lead concentration and isotopic composition for the Staten Island off-site samples were similar to previously published data for other northeastern US cities and reflect re-suspension and re-mobilization of local accumulated Pb. The considerable differences in both the Pb isotopic composition and Pb concentration of on-site and off-site samples resulted in the ability to geochemically trace the transport of particulate Pb. Data in this study indicate minimal off-site surface transport of Pb from the Jewett site into the neighboring residential area.

Changes in soil organic carbon fractions following remediation of a degraded coastal floodplain wetland

NASA Astrophysics Data System (ADS)

Wong, Vanessa; McNaughton, Caitlyn; Pearson, Amy

2017-04-01

Coastal floodplain soils and wetland sediments can store large amounts of soil organic carbon (SOC). These environments are also commonly underlain by sulfidic sediments which can oxidise, largely due to drainage of floodplains to decrease water levels, to form coastal acid sulfate soils (CASS). Following oxidation, pH of both soil and water decrease, and acidity and mobilisation of trace metals increases to adversely affect vegetation and adjacent aquatic ecosystems. In extreme cases, vegetation death occurs resulting in the formation of scalds, which are large bare patches. Remediation of these degraded coastal soils generally involves neutralisation of acidity via application of lime and the re-introduction of anoxic conditions by raising water levels. Our understanding of the geochemical changes which occur as a result of remediation is relatively well established. However, SOC stocks and fractions have not been quantified in these coastal floodplain environments. We studied the changes in soil geochemistry and SOC stocks and fractions three years after remediation of a degraded and scalded coastal floodplain. Remediation treatments included raising water levels, and addition of either lime (LO) or lime and mulch (LM) relative to a control (C) site. We found SOC concentrations in the remediated sites (LO and LM) were more than double than that found at site C, reflected in the higher SOC stocks to a depth of 1.6 m. The particulate organic C fraction was higher at sites LO and LM due to increased vegetation and biomass inputs, compared to site C. Therefore, coastal floodplains and wetlands are a large store of SOC and can potentially increase SOC following remediation due to i) reduced decomposition rates with higher water levels and waterlogging, and ii) high C inputs due to rapid revegetation of scalded areas and high rates of biomass production.

Ecohydrological interactions within "fairy circles" in the Namib Desert: Revisiting the self-organization hypothesis

NASA Astrophysics Data System (ADS)

Ravi, Sujith; Wang, Lixin; Kaseke, Kudzai Farai; Buynevich, Ilya V.; Marais, Eugene

2017-02-01

Vegetation patterns such as rings, bands, and spots are recurrent characteristics of resource-limited arid and semiarid ecosystems. One of the most recognizable vegetation patterns is the millions of circular patches, often referred to as "fairy circles," within the arid grassland matrix extending over hundreds of kilometers in the Namib Desert. Several modeling studies have highlighted the role of plant-soil interactions in the formation of these fairy circles. However, little is known about the spatial and temporal variabilities of hydrological processes inside a fairy circle. In particular, a detailed field assessment of hydrological and soil properties inside and outside the fairy circles is limited. We conducted extensive measurements of infiltration rate, soil moisture, grass biometric, and sediment grain-size distribution from multiple circles and interspaces in the Namib Desert. Our results indicate that considerable heterogeneity in hydrological processes exists within the fairy circles, resulting from the presence of coarser particles in the inner bare soil areas, whereas concentration of fine soil occurs on the vegetated edges. The trapping of aeolian and water-borne sediments by plants may result in the observed soil textural changes beneath the vegetation, which in turn, explains the heterogeneity in hydrological processes such as infiltration and runoff. Our investigation provides new insights and experimental data on the ecohydrological processes associated with fairy circles, from a less studied location devoid of sand termite activity within the circles. The results seem to provide support to the "self-organization hypothesis" of fairy circle formation attributed to the antiphase spatial biomass-water distributions.

Strategies to determine diversity, growth, and activity of ammonia-oxidizing archaea in soil.

PubMed

Nicol, Graeme W; Prosser, James I

2011-01-01

Ecological studies of soil microorganisms require reliable techniques for assessment of microbial community composition, abundance, growth, and activity. Soil structure and physicochemical properties seriously limit the applicability and value of methods involving direct observation, and ecological studies have focused on communities and populations, rather than single cells or microcolonies. Although ammonia-oxidizing archaea were discovered 5 years ago, there are still no cultured representatives from soil and there remains a lack of knowledge regarding their genomic composition, physiology, or functional diversity. Despite these limitations, however, significant insights into their distribution, growth characteristics, and metabolism have been made through the use of a range of molecular methodologies. As well as the analysis of taxonomic markers such as 16S rRNA genes, the development of PCR primers based on a limited number of (mostly marine) sequences has enabled the analysis of homologues encoding proteins involved in energy and carbon metabolism. This chapter will highlight the range of molecular methodologies available for examining the diversity, growth, and activity of ammonia-oxidizing archaea in the soil environment. Copyright © 2011 Elsevier Inc. All rights reserved.

The university gardens: a natural classroom for soil study

NASA Astrophysics Data System (ADS)

Sánchez-Marañón, M.; Delgado, G.; Párraga, J.; Martín-García, J. M.; Delgado, R.

2012-04-01

The European Space of Superior Education and specifically The Declaration of Bolonia signed by the Ministers responsible for Higher Education in 29 European countries are boosting a renewing of the traditional teaching methods in our universities. Most disciplines have incorporated and adapted the information technologies to their study object in order to achieve a more graphic and dynamic professor-student relationship. The requirement of cutting dawn theory and enhancing practice aspects have also led to intensify the efforts to update and design experiments. The laboratory experiments may be useful tools to hook the students but in the environmental sciences, an object studied in the lab is far away of its natural reality and functioning. Soils are dynamic entities in the nature. Because soil students are in the city and do not have a regular contact with the field, our aim was to teach soils operating in full capacity in the city. Taking advantage of the gardens of our university, a patch of nature in the city, we designed an experiment to show the 'vital signs' of soil and its temporal variability in a short time. In a landscaped area at the Faculty of Science we made a soil survey and subsequently we selected several areas for the installation of soil temperature, humidity, water tension, and respiration sensors. Students arranged by groups and connected on-line through blogs and social nets should record the measurements every day. Although the experiment has just starting, by this teaching method it is expected that the students achieve an experimental knowledge about soil and the way to study it, including measuring devices. They also will learn to organize and elaborate a soil report from real data, as well as work systems and habits for their future career. Acknowledgment: Innovation Project 11-272, Agencia Nacional de Evaluación de la Calidad y Acreditación (ANECA), Spain.

Long term drainage alters plant biodiversity and soil C- and N-storage

NASA Astrophysics Data System (ADS)

Wolf, K.; Bol, R.; Dungait, J. A. J.; Dixon, L.; Dhanoa, D.; Beaumont, D.; Wiesenberg, G. L. B.

2012-04-01

Moisture and slope position can have a strong influence on soil properties and plant communities. In a long term permanent grassland experiment, sub-surface drainage was introduced in 1982 on some plots of Rowden Moor at North Wyke (SW UK). The soil is a Stagnic vertic Cambisol with a dense clay layer at shallow depth. After drainage the plant community had shifted from a Lolium perenne dominated grassland with patches of Juncus sp. towards a typical grassland plant community dominated by Lolium perenne and Trifolium sp. In addition, soil carbon and nitrogen concentrations significantly decreased. This is related to a smaller contribution of plant-derived organic matter to soil due to the change in plant community structure, and the enhanced mineralization of soil organic matter (SOM) under lower soil moisture. However, for C:N ratios neither plants nor soil did reveal any drainage related change arguing for an identical degradability of plant and soil organic matter. Furthermore the δ13C values tend to get more negative in soil, which could be related to the changing plant community. For δ15N no changes were observed, which was surprising as increase δ15N values were expected due to the increase in legumes on the drained plot. Changes in the chemical composition of SOM were also examined using compositional changes of soil n-alkanes. A shift in the alkane abundance occurs from the upper part of the slope (dominated by n-C31), to the bottom parts (n-C29 enriched). The carbon preference index and average chain length of alkanes correlated between undrained and drained plots and decreased down slope. Similarly, several alkane ratios like n-C27/n-C31 declined, due to the enhanced mineralization. Hence, the molecular pattern changed on the one hand due to changing contribution of plant derived organic matter and on the other hand because of changing preservation of organic matter in soil. The study showed that drainage has a long term effect on the plant community leading to depletion in C- and N-contents and a change in the chemical composition of SOM.

Geospatial variability of soil CO2-C exchange in the main terrestrial ecosystems of Keller Peninsula, Maritime Antarctica.

PubMed

Thomazini, A; Francelino, M R; Pereira, A B; Schünemann, A L; Mendonça, E S; Almeida, P H A; Schaefer, C E G R

2016-08-15

Soils and vegetation play an important role in the carbon exchange in Maritime Antarctica but little is known on the spatial variability of carbon processes in Antarctic terrestrial environments. The objective of the current study was to investigate (i) the soil development and (ii) spatial variability of ecosystem respiration (ER), net ecosystem CO2 exchange (NEE), gross primary production (GPP), soil temperature (ST) and soil moisture (SM) under four distinct vegetation types and a bare soil in Keller Peninsula, King George Island, Maritime Antarctica, as follows: site 1: moss-turf community; site 2: moss-carpet community; site 3: phanerogamic antarctic community; site 4: moss-carpet community (predominantly colonized by Sanionia uncinata); site 5: bare soil. Soils were sampled at different layers. A regular 40-point (5×8 m) grid, with a minimum separation distance of 1m, was installed at each site to quantify the spatial variability of carbon exchange, soil moisture and temperature. Vegetation characteristics showed closer relation with soil development across the studied sites. ER reached 2.26μmolCO2m(-2)s(-1) in site 3, where ST was higher (7.53°C). A greater sink effect was revealed in site 4 (net uptake of 1.54μmolCO2m(-2)s(-1)) associated with higher SM (0.32m(3)m(-3)). Spherical models were fitted to describe all experimental semivariograms. Results indicate that ST and SM are directly related to the spatial variability of CO2 exchange. Heterogeneous vegetation patches showed smaller range values. Overall, poorly drained terrestrial ecosystems act as CO2 sink. Conversely, where ER is more pronounced, they are associated with intense soil carbon mineralization. The formations of new ice-free areas, depending on the local soil drainage condition, have an important effect on CO2 exchange. With increasing ice/snow melting, and resulting widespread waterlogging, increasing CO2 sink in terrestrial ecosystems is expected for Maritime Antarctica. Copyright © 2016 Elsevier B.V. All rights reserved.

Dry Acid Deposition and Accumulation on the Surface of Mars and in the Atacama Desert, Chile

NASA Technical Reports Server (NTRS)

Quinn, R. C.; Zent, A. P.; Ehrenfruend, P.; Taylor, C. L.; McKay, C. P.; Garry, J. R. C.

2005-01-01

It has been discovered recently that soils from certain regions of the Chilean Atacama Desert have some characteristics that are similar to the surface materials tested by the Viking Landers. Navarro-Gonzalez et al. demonstrated that the quantity and diversity of heterotrophic bacteria increase as a function of local water availability in the Atacama, and that for some soil samples collected in the driest regions, no culturable bacteria could be isolated. Additionally, Navarro-Gonzalez et al. reported that pyrolysis-GCMS analysis of soils collected from these regions revealed extremely low levels of organic matter. Although the mechanism resulting in the low level of organics in these regions was not established by Navarro-Gonzalez, the condition of organic-depleted, near-sterile soil offers an interesting Earth analog of the martian surface material, as the Viking Gas Exchange (GEx) experiment and Labeled Release (LR) experiment were unable to demonstrate the presence of culturable bacteria, and the Viking pyrolysis- GCMS was unable to detect organic compounds.

Influence of isolated bacterial strains on the in situ biodegradation of endosulfan and the reduction of endosulfan- contaminated soil toxicity.

PubMed

Kong, Lingfen; Zhang, Yu; Zhu, Lusheng; Wang, Jinhua; Wang, Jun; Du, Zhongkun; Zhang, Cheng

2018-09-30

The recently discovered endosulfan-degrading bacterial strains Pusillimonas sp. JW2 and Bordetella petrii NS were isolated from endosulfan-polluted water and soil environments. The optimal conditions for the growth and biodegradation activity of the strains JW2 and NS were studied in detail. In addition, the ability of the strains JW2 and NS to biodegrade endosulfan in soils during in situ bioremediation experiments was investigated. At a concentration of 2 mg of endosulfan per kilogram of soil, both JW2 and NS had positive effects on the degradation of endosulfan; JW2 degraded 100% and 91.5% of α- and β-endosulfan, respectively, and NS degraded 95.1% and 90.3% of α- and β-endosulfan, respectively. Polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) of soil samples showed the successful colonization of JW2 and NS, and the toxicity of the soil decreased, as determined by single-cell gel electrophoresis (SCGE) assays of Eiseniafetida and micronucleus (MN) assays of Viciafaba root tip cells. Furthermore, the metabolic products of the bacterially degraded endosulfan from the in situ experiments were identified as endosulfan ether and lactone. This study provided potentially foundational backgrounds information for the remediation of endosulfan-contaminated soil. Copyright © 2018 Elsevier Inc. All rights reserved.

Saprophytic and Potentially Pathogenic Fusarium Species from Peat Soil in Perak and Pahang

PubMed Central

Karim, Nurul Farah Abdul; Mohd, Masratulhawa; Nor, Nik Mohd Izham Mohd; Zakaria, Latiffah

2016-01-01

Isolates of Fusarium were discovered in peat soil samples collected from peat swamp forest, waterlogged peat soil, and peat soil from oil palm plantations. Morphological characteristics were used to tentatively identify the isolates, and species confirmation was based on the sequence of translation elongation factor-1α (TEF-1α) and phylogenetic analysis. Based on the closest match of Basic Local Alignment Search Tool (BLAST) searches against the GenBank and Fusarium-ID databases, five Fusarium species were identified, namely F. oxysporum (60%), F. solani (23%), F. proliferatum (14%), F. semitectum (1%), and F. verticillioides (1%). From a neighbour-joining tree of combined TEF-1α and β-tubulin sequences, isolates from the same species were clustered in the same clade, though intraspecies variations were observed from the phylogenetic analysis. The Fusarium species isolated in the present study are soil inhabitants and are widely distributed worldwide. These species can act as saprophytes and decomposers as well as plant pathogens. The presence of Fusarium species in peat soils suggested that peat soils could be a reservoir of plant pathogens, as well-known plant pathogenic species such F. oxysporum, F. solani, F. proliferatum, and F. verticillioides were identified. The results of the present study provide knowledge on the survival and distribution of Fusarium species. PMID:27019679

Rhamnolipid surface thermodynamic properties and transport in agricultural soil.

PubMed

Renfro, Tyler Dillard; Xie, Weijie; Yang, Guang; Chen, Gang

2014-03-01

Rhamnolipid is a biosurfactant produced by several Pseudomonas species, which can wet hydrophobic soils by lowering the cohesive and/or adhesive surface tension. Because of its biodegradability, rhamnolipid applications bring minimal adverse impact on the soil and groundwater as compared with that of chemical wetting agents. Subsequently, rhamnolipid applications have more advantages when used to improve irrigation in the agricultural soil, especially under draught conditions. In the presence of rhamnolipid, water surface tension dropped linearly with the increase of rhamnolipid concentration until the rhamnolipid critical micelle concentration (CMC) of 30 mg/L was reached. Below the CMC, rhamnolipid had linear adsorption isotherms on the soil with a partition coefficient of 0.126 L/kg. Rhamnolipid transport breakthrough curves had a broad and diffuse infiltration front, indicating retention of rhamnolipid on the soil increased with time. Rhamnolipid transport was found to be well represented by the advection-dispersion equation based on a local equilibrium assumption. When applied at concentrations above the CMC, the formed rhamnolipid micelles prevented rhamnolipid adsorption (both equilibrium adsorption and kinetic adsorption) in the soil. It was discovered in this research that rhamnolipid surface thermodynamic properties played the key role in controlling rhamnolipid transport. The attractive forces between rhamnolipid molecules contributed to micelle formation and facilitated rhamnolipid transport. Published by Elsevier B.V.

Time scale for degradation and erosion of archaeological terraces in the Judea Mountains, Israel

NASA Astrophysics Data System (ADS)

Porat, Naomi; Elinson, Rotem; Ben Dor, Eyal; Avni, Yoav; Gadot, Yuval

2017-04-01

The fate of mountain bench terraces which have been abandoned in ancient times is puzzling. On the one hand recently abandoned terraces undergo rapid degradation by walls crumbling, leading to soil being washed by rain water out of breaches in the walls, suggesting that within a short time all soil would be washed down-slope. On the other hand slopes with degraded terraces appear to still retain much soil even though only faint remains of the terraces exist. Moreover, if soil is rapidly eroded down-slope when terraces are no longer maintained, where do subsequent terrace builders find the soil to fill behind the stone walls? These questions were addressed as part of a larger study on the chronology of terraces in the Judea Mountains, Israel. Previous OSL dating of terrace soils in the region showed that the majority of the maintained terraces were constructed during the past 700 years, and only occasionally older ages were obtained for the soil at the very base of these terraces. Concerns were raised that soil erosion caused earlier events of terrace construction to disappear. To check if terraces and soils indeed erode entirely and how long this might take, we selected a relatively smooth hill slope showing small patches of limestone bedrock as well as remains of highly degraded sets of terraces. Three pits were excavated in soils within three different terrace remains down to bedrock, some to a depth of 2 m, and samples for OSL dating were collected from the exposed soil sections. In all three pits the lowermost samples gave ages of 3000-4500 years before the present, possibly the natural soils before any human intervention. However samples from a depth of 35-45 cm gave ages of 350-200 years, providing the last time the soil at that depth was exposed to sunlight. This suggests that the terraces were abandoned in the past 200 years or so and since then degraded. However the thick soil present on most of the slope suggests that after the first stage of rapid degradation the slope reaches equilibrium, probably due to coverage by native shrubs that reduce direct soil erosion, and most of the soil is retained on the slope.

How far are rheological parameters from amplitude sweep tests predictable using common physicochemical soil properties?

NASA Astrophysics Data System (ADS)

Stoppe, N.; Horn, R.

2017-01-01

A basic understanding of soil behavior on the mesoscale resp. macroscale (i.e. soil aggregates resp. bulk soil) requires knowledge of the processes at the microscale (i.e. particle scale), therefore rheological investigations of natural soils receive growing attention. In the present research homogenized and sieved (< 2 mm) samples from Marshland soils of the riparian zone of the River Elbe (North Germany) were analyzed with a modular compact rheometer MCR 300 (Anton Paar, Ostfildern, Germany) with a profiled parallel-plate measuring system. Amplitude sweep tests (AST) with controlled shear deformation were conducted to investigate the viscoelastic properties of the studied soils under oszillatory stress. The gradual depletion of microstructural stiffness during AST cannot only be characterized by the well-known rheological parameters G, G″ and tan δ but also by the dimensionless area parameter integral z, which quantifies the elasticity of microstructure. To discover the physicochemical parameters, which influences the microstructural stiffness, statistical tests were used taking the combined effects of these parameters into account. Although the influence of the individual factors varies depending on soil texture, the physicochemical features significantly affecting soil micro structure were identified. Based on the determined statistical relationships between rheological and physicochemical parameters, pedotransfer functions (PTF) have been developed, which allow a mathematical estimation of the rheological target value integral z. Thus, stabilizing factors are: soil organic matter, concentration of Ca2+, content of CaCO3 and pedogenic iron oxides; whereas the concentration of Na+ and water content represent structurally unfavorable factors.

Drought in an invaded Hawaiian lowland wet forest

Treesearch

Jené Michaud; Susan Cordell; T. Colleen Cole; Rebecca Ostertag

2015-01-01

In this study we examined historic drought frequency and hydrologic effects of removing invasive plants from one of the few remaining Hawaiian wet lowland forests, near Hilo, Hawai‘i. We developed a conceptual and statistical model of Hilo droughts using historic rainfall and pan evaporation data and discovered that episodes of low soil moisture were most likely from...

The ALMT family of organic acid transporters in plants and their involvement in detoxification and nutrient security

USDA-ARS?s Scientific Manuscript database

About a decade ago, members of a new protein family of anion channels were discovered on the basis of their ability to confer on plants the tolerance towards toxic aluminum ions in the soil. The efflux of Al3+ chelating malate anions through these channels is stimulated by external Al3+ ions. This f...

Ecological drought in the Hawaiian Islands: unique tropical systems are vulnerable to drought

Treesearch

Dave Helweg; Christian Giardina

2017-01-01

The Hawaiian Islands are among the most isolated and recently inhabited places on Earth. Discovered by Polynesian voyagers some 1000 years ago, people arrived to find unique wildlife and plants arrayed across a remarkable range of ecosystems. Polynesian settlers relied on traditional methods to cultivate canoe crops across the wide range of climate and soils. Early...

Ecosystem services of boreal forests - Carbon budget mapping at high resolution.

PubMed

Akujärvi, Anu; Lehtonen, Aleksi; Liski, Jari

2016-10-01

The carbon (C) cycle of forests produces ecosystem services (ES) such as climate regulation and timber production. Mapping these ES using simple land cover -based proxies might add remarkable inaccuracy to the estimates. A framework to map the current status of the C budget of boreal forested landscapes was developed. The C stocks of biomass and soil and the annual change in these stocks were quantified in a 20 × 20 m resolution at the regional level on mineral soils in southern Finland. The fine-scale variation of the estimates was analyzed geo-statistically. The reliability of the estimates was evaluated by comparing them to measurements from the national multi-source forest inventory. The C stocks of forests increased slightly from the south coast to inland whereas the changes in these stocks were more uniform. The spatial patches of C stocks were larger than those of C stock changes. The patch size of the C stocks reflected the spatial variation in the environmental conditions, and that of the C stock changes the typical area of forest management compartments. The simulated estimates agreed well with the measurements indicating a good mapping framework performance. The mapping framework is the basis for evaluating the effects of forest management alternatives on C budget at high resolution across large spatial scales. It will be coupled with the assessment of other ES and biodiversity to study their relationships. The framework integrated a wide suite of simulation models and extensive inventory data. It provided reliable estimates of the human influence on C cycle in forested landscapes. Copyright © 2016 Elsevier Ltd. All rights reserved.

Analysing hydro-mechanical behaviour of reinforced slopes through centrifuge modelling

NASA Astrophysics Data System (ADS)

Veenhof, Rick; Wu, Wei

2017-04-01

Every year, slope instability is causing casualties and damage to properties and the environment. The behaviour of slopes during and after these kind of events is complex and depends on meteorological conditions, slope geometry, hydro-mechanical soil properties, boundary conditions and the initial state of the soils. This study describes the effects of adding reinforcement, consisting of randomly distributed polyolefin monofilament fibres or Ryegrass (Lolium), on the behaviour of medium-fine sand in loose and medium dense conditions. Direct shear tests were performed on sand specimens with different void ratios, water content and fibre or root density, respectively. To simulate the stress state of real scale field situations, centrifuge model tests were conducted on sand specimens with different slope angles, thickness of the reinforced layer, fibre density, void ratio and water content. An increase in peak shear strength is observed in all reinforced cases. Centrifuge tests show that for slopes that are reinforced the period until failure is extended. The location of shear band formation and patch displacement behaviour indicate that the design of slope reinforcement has a significant effect on the failure behaviour. Future research will focus on the effect of plant water uptake on soil cohesion.

Effect of hydration status on pesticide uptake in anurans following exposure to contaminated soils.

PubMed

Glinski, Donna A; Henderson, W Matthew; Van Meter, Robin J; Purucker, S Thomas

2018-06-01

In this study, the impact of hydration status on dermal uptake of pesticides in two species of amphibians is examined. Absorption of pesticides in anurans occurs primarily through a highly vascularized dermal seat patch; however, pesticides can also enter through the superficial dermis following exposure. Despite the growing body of literature on dermal exposure in amphibians, little is known on how hydration status influences uptake. Thus, the objective of this study was to investigate the influence of hydration status on absorption of pesticides (atrazine, triadimefon, metolachlor, chlorothalonil, and imidacloprid) in southern leopard frogs (Lithobates sphenocephala) and Fowler's toads (Anaxyrus fowleri). Amphibian treatments included dehydration periods of 0, 2, 4, 6, 8, or 10 h prior to exposure to pesticide-contaminated soils for 8 h. Following exposure, soil and whole-body homogenates were extracted and analyzed by LC-MS/MS. Dehydration time was then regressed against post-exposure concentrations to infer the impact of dehydration on dermal pesticide uptake. Increased dehydration time resulted in significantly lowered pesticide concentrations in both species (F 6, 293  = 67.66, p = 0.007) for the five pesticides studied. This phenomenon could be due to an energy and/or dilution effect.

Arctic Tundra Vegetation Functional Types Based on Photosynthetic Physiology and Optical Properties

NASA Technical Reports Server (NTRS)

Huemmrich, Karl F.; Gamon, John; Tweedie, Craig; Campbell, Petya P. K.; Landis, David; Middleton, Elizabeth

2012-01-01

Climate change in tundra regions may alter vegetation species composition and ecosystem carbon balance. Remote sensing provides critical tools for monitoring these changes as optical signals provide a way to scale from plot measurements to regional patterns. Gas exchange measurements of pure patches of key vegetation functional types (lichens, mosses, and vascular plants) in sedge tundra at Barrow AK, show three significantly different values of light use efficiency (LUE) with values of 0.013+/-0.001, 0.0018+/-0.0002, and 0.0012 0.0001 mol C/mol absorbed quanta for vascular plants, mosses and lichens, respectively. Further, discriminant analysis of patch reflectance identifies five spectral bands that can separate each vegetation functional type as well as nongreen material (bare soil, standing water, and dead leaves). These results were tested along a 100 m transect where midsummer spectral reflectance and vegetation coverage were measured at one meter intervals. Area-averaged canopy LUE estimated from coverage fractions of the three functional types varied widely, even over short distances. Patch-level statistical discriminant functions applied to in situ hyperspectral reflectance successfully unmixed cover fractions of the vegetation functional types. These functions, developed from the tram data, were applied to 30 m spatial resolution Earth Observing-1 Hyperion imaging spectrometer data to examine regional variability in distribution of the vegetation functional types and from those distributions, the variability of LUE. Across the landscape, there was a fivefold variation in tundra LUE that was correlated to a spectral vegetation index developed to detect vegetation chlorophyll content.

Bare ground as a crucial habitat feature for a rare terrestrially foraging farmland bird of Central Europe

NASA Astrophysics Data System (ADS)

Tagmann-Ioset, Aline; Schaub, Michael; Reichlin, Thomas S.; Weisshaupt, Nadja; Arlettaz, Raphaël

2012-02-01

Most farmland birds have declined significantly throughout the world due to agricultural intensification. Agri-environmental policies could not halt the decline of ground-foraging insectivorous farmland birds in Europe, indicating a gap in knowledge of species' ecological requirements. This represents a major impediment to the development of efficient, evidence-based agri-environmental measures. Using radio-tracking we studied habitat selection by farmland Hoopoes, a rare terrestrially foraging bird in Central Europe, and assessed habitat preferences of their main prey (Molecrickets), with the aim to identify optimal foraging habitat profiles in order to guide farmland management. Hierarchical logistic regression modelling of habitat descriptors at actual foraging locations vs. random locations within the home ranges of 13 males showed that the availability of bare ground was the principal determinant of foraging activity, with an optimum of 60-70% bare ground at patch scale. This ideal habitat configuration, which facilitates birds' terrestrial hunting, was found primarily in intensively farmed fruit tree plantations which dominated the landscape matrix: this habitat offers extensive strips of bare ground due to systematic removal of ground vegetation along tree rows. In contrast, dense grassland and cropland were avoided. Another important habitat feature was the availability of nongravelly soil, which enabled Hoopoes to probe the earth with their long, curved bill in search of underground invertebrates. The role of Molecrickets, however, appeared secondary to foraging patch selection, suggesting that prey accessibility was per se more important than prey abundance. Creating patches of bare ground within modern farmland where sufficient supplies of suitable invertebrate prey exist will support Hoopoe populations.

Novel Alleviation Mechanisms of Aluminum Phytotoxicity via Released Biosilicon from Rice Straw-Derived Biochars

PubMed Central

Qian, Linbo; Chen, Baoliang; Chen, Mengfang

2016-01-01

Replacing biosilicon and biocarbon in soil via biochar amendment is a novel approach for soil amelioration and pollution remediation. The unique roles of silicon (Si)-rich biochar in aluminum (Al) phytotoxicity alleviation have not been discovered. In this study, the alleviation of Al phytotoxicity to wheat plants (root tips cell death) by biochars fabricated from rice straw pyrolyzed at 400 and 700 °C (RS400 and RS700) and the feedstock (RS100) were studied using a slurry system containing typical acidic soils for a 15-day exposure experiment. The distributions of Al and Si in the slurry solution, soil and plant root tissue were monitored by staining methods, chemical extractions and SEM-EDS observations. We found that the biological sourced silicon in biochars served dual roles in Al phytotoxicity alleviation in acidic soil slurry. On one hand, the Si particles reduced the amount of soil exchangeable Al and prevented the migration of Al to the plant. More importantly, the Si released from biochars synchronously absorbed by the plants and coordinated with Al to form Al-Si compounds in the epidermis of wheat roots, which is a new mechanism for Al phytotoxicity alleviation in acidic soil slurry by biochar amendment. In addition, the steady release of Si from the rice straw-derived biochars was a sustainable Si source for aluminosilicate reconstruction in acidic soil. PMID:27385598

Novel Alleviation Mechanisms of Aluminum Phytotoxicity via Released Biosilicon from Rice Straw-Derived Biochars

NASA Astrophysics Data System (ADS)

Qian, Linbo; Chen, Baoliang; Chen, Mengfang

2016-07-01

Replacing biosilicon and biocarbon in soil via biochar amendment is a novel approach for soil amelioration and pollution remediation. The unique roles of silicon (Si)-rich biochar in aluminum (Al) phytotoxicity alleviation have not been discovered. In this study, the alleviation of Al phytotoxicity to wheat plants (root tips cell death) by biochars fabricated from rice straw pyrolyzed at 400 and 700 °C (RS400 and RS700) and the feedstock (RS100) were studied using a slurry system containing typical acidic soils for a 15-day exposure experiment. The distributions of Al and Si in the slurry solution, soil and plant root tissue were monitored by staining methods, chemical extractions and SEM-EDS observations. We found that the biological sourced silicon in biochars served dual roles in Al phytotoxicity alleviation in acidic soil slurry. On one hand, the Si particles reduced the amount of soil exchangeable Al and prevented the migration of Al to the plant. More importantly, the Si released from biochars synchronously absorbed by the plants and coordinated with Al to form Al-Si compounds in the epidermis of wheat roots, which is a new mechanism for Al phytotoxicity alleviation in acidic soil slurry by biochar amendment. In addition, the steady release of Si from the rice straw-derived biochars was a sustainable Si source for aluminosilicate reconstruction in acidic soil.

Soil Methane Sink Capacity Response to a Long-Term Wildfire Chronosequence in Northern Sweden.

PubMed

McNamara, Niall P; Gregg, Ruth; Oakley, Simon; Stott, Andy; Rahman, Md Tanvir; Murrell, J Colin; Wardle, David A; Bardgett, Richard D; Ostle, Nick J

2015-01-01

Boreal forests occupy nearly one fifth of the terrestrial land surface and are recognised as globally important regulators of carbon (C) cycling and greenhouse gas emissions. Carbon sequestration processes in these forests include assimilation of CO2 into biomass and subsequently into soil organic matter, and soil microbial oxidation of methane (CH4). In this study we explored how ecosystem retrogression, which drives vegetation change, regulates the important process of soil CH4 oxidation in boreal forests. We measured soil CH4 oxidation processes on a group of 30 forested islands in northern Sweden differing greatly in fire history, and collectively representing a retrogressive chronosequence, spanning 5000 years. Across these islands the build-up of soil organic matter was observed to increase with time since fire disturbance, with a significant correlation between greater humus depth and increased net soil CH4 oxidation rates. We suggest that this increase in net CH4 oxidation rates, in the absence of disturbance, results as deeper humus stores accumulate and provide niches for methanotrophs to thrive. By using this gradient we have discovered important regulatory controls on the stability of soil CH4 oxidation processes that could not have not been explored through shorter-term experiments. Our findings indicate that in the absence of human interventions such as fire suppression, and with increased wildfire frequency, the globally important boreal CH4 sink could be diminished.

Soil Methane Sink Capacity Response to a Long-Term Wildfire Chronosequence in Northern Sweden

PubMed Central

McNamara, Niall P.; Gregg, Ruth; Oakley, Simon; Stott, Andy; Rahman, Md. Tanvir; Murrell, J. Colin; Wardle, David A.; Bardgett, Richard D.; Ostle, Nick J.

2015-01-01

Boreal forests occupy nearly one fifth of the terrestrial land surface and are recognised as globally important regulators of carbon (C) cycling and greenhouse gas emissions. Carbon sequestration processes in these forests include assimilation of CO2 into biomass and subsequently into soil organic matter, and soil microbial oxidation of methane (CH4). In this study we explored how ecosystem retrogression, which drives vegetation change, regulates the important process of soil CH4 oxidation in boreal forests. We measured soil CH4 oxidation processes on a group of 30 forested islands in northern Sweden differing greatly in fire history, and collectively representing a retrogressive chronosequence, spanning 5000 years. Across these islands the build-up of soil organic matter was observed to increase with time since fire disturbance, with a significant correlation between greater humus depth and increased net soil CH4 oxidation rates. We suggest that this increase in net CH4 oxidation rates, in the absence of disturbance, results as deeper humus stores accumulate and provide niches for methanotrophs to thrive. By using this gradient we have discovered important regulatory controls on the stability of soil CH4 oxidation processes that could not have not been explored through shorter-term experiments. Our findings indicate that in the absence of human interventions such as fire suppression, and with increased wildfire frequency, the globally important boreal CH4 sink could be diminished. PMID:26372346

The late positive potential indexes a role for emotion during learning of trust from eye-gaze cues

PubMed Central

Manssuer, Luis R.; Roberts, Mark V.; Tipper, Steven P.

2015-01-01

Gaze direction perception triggers rapid visuospatial orienting to the location observed by others. When this is congruent with the location of a target, reaction times are faster than when incongruent. Functional magnetic resonance imaging studies suggest that the non-joint attention induced by incongruent cues are experienced as more emotionally negative and this could relate to less favorable trust judgments of the faces when gaze-cues are contingent with identity. Here, we provide further support for these findings using time-resolved event-related potentials. In addition to replicating the effects of identity-contingent gaze-cues on reaction times and trust judgments, we discovered that the emotion-related late positive potential increased across blocks to incongruent compared to congruent faces before, during and after the gaze-cue, suggesting both learning and retrieval of emotion states associated with the face. We also discovered that the face-recognition-related N250 component appeared to localize to sources in anterior temporal areas. Our findings provide unique electrophysiological evidence for the role of emotion in learning trust from gaze-cues, suggesting that the retrieval of face evaluations during interaction may take around 1000 ms and that the N250 originates from anterior temporal face patches. PMID:25731599

The Distribution and Habitat Affinities of the Invasive Ant Myrmica rubra (Hymenoptera: Formicidae) in Southern New England.

PubMed

Chen, Wen; Adams, Eldridge S

2018-06-06

The Eurasian ant Myrmica rubra (L.) (Hymenoptera: Formicidae) was first discovered in North America in the early 1900s in Massachusetts. Populations have since appeared in at least seven states within the United States and in seven Canadian provinces. We conducted a systematic search for the ant across southern New England-the states of Connecticut, Massachusetts, and Rhode Island-where M. rubra is spreading from multiple loci. The species occurs in two large regions in Massachusetts, each spanning approximately 75 km, and in several smaller populations in Massachusetts and Rhode Island. No populations were discovered anywhere in Connecticut or across large expanses of central Massachusetts and northern Rhode Island, despite the presence of apparently favorable habitat. This pattern of distribution suggests a combination of long-distance dispersal by human transport coupled with slow local spread. Resurveys of sites previously known to support M. rubra showed that populations persist for decades. Within invaded areas, M. rubra was strongly associated with particular habitats. Colonies were most prevalent in freshwater wetlands and in moist forests near wetlands and water; they were uncommon in drier forests and were rare in open habitats outside of wetlands. The slow rate of spread over the last 110 yr suggests that the ants do not easily disperse between patches of suitable habitat.

Rapid response of soil fungal communities to low and high intensity fire

NASA Astrophysics Data System (ADS)

Smith, Jane E.; Cowan, Ariel D.; Reazin, Chris; Jumpponen, Ari

2016-04-01

Contemporary fires have created high-severity burn areas exceeding historical distributions in forests in the western United States. Until recently, the response of soil ecosystems to high intensity burns has been largely unknown. In complementary studies, we investigated the environmental effect of extreme soil heating, such that occurs with the complete combustion of large down wood during wildfires, on soil fungi and nutrients. We used TRFLP and next generation sequencing (Illumina MiSeq) to investigate the fungal communities. During the burning of large down wood, temperatures lethal to fungi were detected at 0-cm, 5-cm, and 10-cm depths in soils compared to 0-cm depth in soils receiving low intensity broadcast burns. We compared the soil fungal diversity in ten high intensity burned plots paired with adjacent low intensity burned plots before and one week after at 0-10 cm soil depth. Nonmetric Multidimensional Scaling (NMS) ordinations and analyses of taxon frequencies reveal a substantial community turnover and corresponding near complete replacement of the dominant basidiomycetes by ascomycetes in high intensity burns. These coarse-level taxonomic responses were primarily attributable to a few fire-responsive (phoenicoid) fungi, particularly Pyronema sp. and Morchella sp., whose frequencies increased more than 100-fold following high intensity burns. Pinus ponderosa seedlings planted one week post-burn were harvested after four months for EMF root tip analysis. We found: a) greater differences in soil properties and nutrients in high intensity burned soils compared to low intensity burned and unburned soils; b) no differences in EMF richness and diversity; and c) weak differences in community composition based on relative abundance between unburned and either burn treatments. These results confirm the combustion of large downed wood can alter the soil environment directly beneath it. However, an EMF community similar to low burned soils recolonized high burned soils within one growing season. Community results from both burn treatments suggest an increase in patchy spatial distribution of EMF. The importance of incorporating mixed fire effects in fuel management practices will help to provide EMF refugia for dry forest regeneration. Our studies highlight the strong and rapid fungal community responses to fires and differences among fires of different severities. We theorize that quick initiation of EMF recolonization is possible depending on the size of high burn patches, proximity of low and unburned soil, and survival of nearby hosts.

Habitat quality and geometry affect patch occupancy of two Orthopteran species.

PubMed

Pasinelli, Gilberto; Meichtry-Stier, Kim; Birrer, Simon; Baur, Bruno; Duss, Martin

2013-01-01

Impacts of habitat loss and fragmentation on distribution and population size of many taxa are well established. In contrast, less is known about the role of within-patch habitat quality for the spatial dynamics of species, even though within-patch habitat quality may substantially influence the dynamics of population networks. We studied occurrence patterns of two Orthopteran species in relation to size, isolation and quality of habitat patches in an intensively managed agricultural landscape (16.65 km(2)) in the Swiss lowland. Occurrence of field crickets (Gryllus campestris) was positively related to patch size and negatively to the distance to the nearest occupied patch, two measures of patch geometry. Moreover, field crickets were more likely to occur in extensively managed meadows, meadows used at low intensity and meadows dominated by Poa pratensis, three measures of patch quality. Occurrence of the large gold grasshopper (Chrysochraon dispar) was negatively related to two measures of patch geometry, distance to the nearest occupied patch and perimeter index (ratio of perimeter length to patch area). Further, large gold grasshoppers were more likely to occupy patches close to water and patches with vegetation left uncut over winter, two measures of patch quality. Finally, examination of patch occupancy dynamics of field crickets revealed that patches colonized in 2009 and patches occupied in both 2005 and 2009 were larger, better connected and of other quality than patches remaining unoccupied and patches from which the species disappeared. The strong relationships between Orthopteran occurrence and aspects of patch geometry found in this study support the "area-and-isolation paradigm". Additionally, our study reveals the importance of patch quality for occurrence patterns of both species, and for patch occupancy dynamics in the field cricket. An increased understanding of patch occupancy patterns may be gained if inference is based on variables related to both habitat geometry and quality.

New contraceptive patch wearability assessed by investigators and participants in a randomized phase 3 study.

PubMed

Kaunitz, Andrew M; Portman, David; Westhoff, Carolyn L; Mishell, Daniel R; Archer, David F; Foegh, Marie

2015-03-01

To evaluate skin irritation and patch adhesiveness of a new weekly low-dose levonorgestrel (LNG) and ethinyl estradiol (EE) contraceptive patch (LNG/EE patch). This analysis was part of an open-label, parallel-group, multicenter, phase 3 study that randomized healthy women to the LNG/EE patch (one patch weekly for three consecutive weeks, followed by a patch-free week for 13 cycles) or to an oral contraceptive for six cycles followed by seven LNG/EE patch cycles. Participants selected patch application sites of abdomen, buttock or upper torso. Investigators rated patch adhesiveness and skin irritation using standardized scales. Participants rated skin irritation and itching daily using standardized scales and recorded patch fall-off on daily diary cards. A total of 32,508 patches were applied (n=1273). At the five clinic visits in which investigators rated the patches, they rated adhesiveness=0 (no lift) for ≥84% of participants and skin irritation=absent/mild for 97% of patches. Participants reported that 2-3.7% of patches fell off and rated skin irritation as absent or mild for 92- 95% of patches, according to site. Investigator- and participant-rated assessments of LNG/EE patch adhesiveness and irritation demonstrated a low incidence of patch detachment, skin irritation and pruritus. This secondary analysis of a phase 3 clinical trial of a new weekly low-dose LNG and EE contraceptive patch, which used assessment by both investigators and participants, observed a low incidence of skin irritation, pruritus and patch detachment. Copyright © 2015 Elsevier Inc. All rights reserved.

Fire management strategies to maintain species population processes in a fragmented landscape of fire-interval extremes.

PubMed

Tulloch, Ayesha I T; Pichancourt, Jean-Baptiste; Gosper, Carl R; Sanders, Angela; Chadès, Iadine

2016-10-01

Changed fire regimes have led to declines of fire-regime-adapted species and loss of biodiversity globally. Fire affects population processes of growth, reproduction, and dispersal in different ways, but there is little guidance about the best fire regime(s) to maintain species population processes in fire-prone ecosystems. We use a process-based approach to determine the best range of fire intervals for keystone plant species in a highly modified Mediterranean ecosystem in southwestern Australia where current fire regimes vary. In highly fragmented areas, fires are few due to limited ignitions and active suppression of wildfire on private land, while in highly connected protected areas fires are frequent and extensive. Using matrix population models, we predict population growth of seven Banksia species under different environmental conditions and patch connectivity, and evaluate the sensitivity of species survival to different fire management strategies and burning intervals. We discover that contrasting, complementary patterns of species life-histories with time since fire result in no single best fire regime. All strategies result in the local patch extinction of at least one species. A small number of burning strategies secure complementary species sets depending on connectivity and post-fire growing conditions. A strategy of no fire always leads to fewer species persisting than prescribed fire or random wildfire, while too-frequent or too-rare burning regimes lead to the possible local extinction of all species. In low landscape connectivity, we find a smaller range of suitable fire intervals, and strategies of prescribed or random burning result in a lower number of species with positive growth rates after 100 years on average compared with burning high connectivity patches. Prescribed fire may reduce or increase extinction risk when applied in combination with wildfire depending on patch connectivity. Poor growing conditions result in a significantly reduced number of species exhibiting positive growth rates after 100 years of management. By exploring the consequences of managing fire, we are able to identify which species are likely to disappear under a given fire regime. Identifying the appropriate complementarity of fire intervals, and their species-specific as well as community-level consequences, is crucial to reduce local extinctions of species in fragmented fire-prone landscapes. © 2016 by the Ecological Society of America.

Elevated native terrestrial snail abundance and diversity in association with an invasive understory shrub, Berberis thunbergii, in a North American deciduous forest

NASA Astrophysics Data System (ADS)

Utz, Ryan M.; Pearce, Timothy A.; Lewis, Danielle L.; Mannino, Joseph C.

2018-01-01

Invasive terrestrial plants often substantially reshape environments, yet how such invasions affect terrestrial snail assemblages remains understudied. We investigated how snail assemblages in deciduous forest soils with dense Berberis thunbergii (Japanese barberry), an invasive shrub in eastern North America, differ from forest areas lacking the shrub. Leaf litter and soil samples were collected from forest patches with dense B. thunbergii understories and adjacent control areas within two exurban forest tracts in western Pennsylvania, U.S.A. Snails were identified to species and quantified by standard diversity metrics. Contrary to our expectations, snails were significantly more abundant and diverse in B. thunbergii-invaded areas. Despite differences in abundance, the snail community composition did not differ between invaded and control habitats. The terrestrial snail assemblage we observed, which was composed entirely of native species, appears to respond favorably to B. thunbergii invasion and therefore may not be negatively impacted by physicochemical changes to soils typically observed in association with the plant. Such findings could reflect the fact that B. thunbergii likely creates more favorable habitat for snails by creating cooler, more humid, and more alkaline soil environments. However, the snail assemblages we retrieved may consist mostly of species with high tolerance to environmental degradation due to a legacy of land use change and acid deposition in the region.

Refuse dumps from leaf-cutting ant nests reduce the intensity of above-ground competition among neighboring plants in a Patagonian steppe

NASA Astrophysics Data System (ADS)

Farji-Brener, Alejandro G.; Lescano, María Natalia

2017-11-01

In arid environments, the high availability of sunlight due to the scarcity of trees suggests that plant competition take place mainly belowground for water and nutrients. However, the occurrence of soil disturbances that increase nutrient availability and thereby promote plant growth may enhance shoot competition between neighboring plants. We conducted a greenhouse experiment to evaluate the influence of the enriched soil patches generated by the leaf-cutting ant, Acromyrmex lobicornis, on the performance of the alien forb Carduus thoermeri (Asteraceae) under different intraspecific competition scenarios. Our results showed that substrate type and competition scenario affected mainly aboveground plant growth. As expected, plants growing without neighbors and in nutrient-rich ant refuse dumps showed more aboveground biomass than plants growing with neighbors and in nutrient-poor steppe soils. However, aboveground competition was more intense in nutrient-poor substrates: plants under shoot and full competition growing in the nutrient-rich ant refuse dumps showed higher biomass than those growing on steppe soils. Belowground biomass was similar among focal plants growing under different substrate type. Our results support the traditional view that increments in resource availability reduce competition intensity. Moreover, the fact that seedlings in this sunny habitat mainly compete aboveground illustrates how limiting factors may be scale-dependent and change in importance as plants grow.

Mating success of males with and without wing patch in Drosophila biarmipes.

PubMed

Hegde, S N; Chethan, B K; Krishna, M S

2005-10-01

Some males of D. biarmipes--synonym of D. rajasekari and D. raychaudhuri have a black patch on the wing. The patch extends from the apical margin of wing to the third longitudinal vein. Field and laboratory studies have been carried out in D. biarmipes to study role of male's wing patch in mating success. The field study shows that nature favors D. biarmipes males with patch. Although males without patch mated, males with patch have higher mating success suggesting the role of wing patch during courtship. Further, among mating males, males with patch had longer wings than males without patch. During courtship, males with patch oriented and mated faster; performed courtship acts such as tapping, scissoring, vibration, licking and twist dance more times than males without patch in both competitive and non-competitive situations. The results indicate that there is a casual relationship between the presence of wing patch, mating speed and success. Also there is a correlation between presence of wing patch, size of the flies and mating success.

[Succession of Larix olgensis and Betula platyphlla-marsh ecotone communities in Changbai Mountain].

PubMed

Mu, Changcheng

2003-11-01

The succession of communities within the ecotone between forest and marsh in Changbai Mountain was studied to identify the interrelation between the succession of ecotone communities and the mesophytization of the ecotone. The succession regime of the ecotone communities was studies by patch size (the volume of each mound) and age class of different tree species, water transmission from soil to atmosphere through the transpiration of different tree species, and regional climate warming and community succession. The results demonstrated that both patch size and water loss through transpiration were increased with age class. The increased volume of mounds and water loss through transpiration of trees were converted to the raised ground surface level and the lowered ground surface water level. Within 60 years, the ground surface level would be raised by 0.405-0.590 m, depending on the distance to the marsh, and the aboveground water level would be lowered by 1.050-1.442 m. Climate had a great effect on the community dynamics. Community succession and regional climate warming intensified the mesophytization process of forest-marsh ecotone, and the ecotone communities would eventually change into forest communities within a relatively short period.

Carnotite resources of the Spud Patch area, San Miguel County, Colorado

USGS Publications Warehouse

Bell, Henry

1953-01-01

The Spud Patch area comprises about 8 square in T. 43 M., R. 18 and 19 W., San Miguel County, Colo., and is about 4 miles northeast of Egnar, Colo. Claims of the United States Vanadium Co. and the Vanadium Corp. of America cover about half the area. Claims of other owners, public land, and patented agricultural land, comprise the remainder of the area. The area is about 38 miles from the Government mill at Montecello, Utah, and 55 miles from the Vanadium Corp. of America mill at Naturita, Colo.Between 1940 and 1951, the Spud Patch area yielded about 24,000 short tons of carnotite ore that probably averaged 0.21 percent U3O8 and 2.2 percent V2O5.The deposits are in a broad sandstone lens near the top of the Salt Wash member of the Jurassic Morrison formation. Although the deposits mined have been mainly impregnations of sandstone by carnotite and gray vanadium-bearing clay minerals, some of the richer deposits found by Geological Survey drilling have a finely disseminated black uranium mineral but no carnotite. The deposits commonly are thin irregular tabular layers, which locally thicken to form elongate masses called "rolls". These rolls have a dominant northeasterly trend. Geologic features found to be most useful as guides to ore are listed.From November 1949 to May 1952, the U.S. Geological Survey drilled 415 diamond-drill holes totaling 67,215 feet in the Spud Patch area. The purpose of this drilling was to find deposits that would make new mines and to appraise the reserves in the unexplored area.As a result of Geological Survey drilling, indicated and inferred reserves computed at the cutoff of 1 foot or more thick and 0.10 percent U3O8 or 1.0 percent V2O5 total 20,500 short tons, averaging 0.28 percent U3O8 and 2.1 percent V2O5. These reserves and those computed at a lower grade cutoff of 0.05 percent U3O8 or 0.50 percent V2O5 and the pounds of contained metal are summarized in table 1.Potential reserves, whose existence is based on geologic evidence alone, are predicted to total about 42,000 short tons, averaging 0.25 percent U3O8 and 2.0 percent V2O5.No additional exploratory-type drilling by the Geological Survey is planned in the Spud Patch area. Recommendations are offered for additional development-type drilling, preferably by claim owners or lessees in specific areas in the vicinity of deposits discovered by Geological Survey drilling.

The Root-Associated Microbial Community of the World's Highest Growing Vascular Plants.

PubMed

Angel, Roey; Conrad, Ralf; Dvorsky, Miroslav; Kopecky, Martin; Kotilínek, Milan; Hiiesalu, Inga; Schweingruber, Fritz; Doležal, Jiří

2016-08-01

Upward migration of plants to barren subnival areas is occurring worldwide due to raising ambient temperatures and glacial recession. In summer 2012, the presence of six vascular plants, growing in a single patch, was recorded at an unprecedented elevation of 6150 m.a.s.l. close to the summit of Mount Shukule II in the Western Himalayas (Ladakh, India). Whilst showing multiple signs of stress, all plants have managed to establish stable growth and persist for several years. To learn about the role of microbes in the process of plant upward migration, we analysed the root-associated microbial community of the plants (three individuals from each) using microscopy and tagged amplicon sequencing. No mycorrhizae were found on the roots, implying they are of little importance to the establishment and early growth of the plants. However, all roots were associated with a complex bacterial community, with richness and diversity estimates similar or even higher than the surrounding bare soil. Both soil and root-associated communities were dominated by members of the orders Sphingomonadales and Sphingobacteriales, which are typical for hot desert soils, but were different from communities of temperate subnival soils and typical rhizosphere communities. Despite taxonomic similarity on the order level, the plants harboured a unique set of highly dominant operational taxonomic units which were not found in the bare soil. These bacteria have been likely transported with the dispersing seeds and became part of the root-associated community following germination. The results indicate that developing soils act not only as a source of inoculation to plant roots but also possibly as a sink for plant-associated bacteria.

High spatial variability in biogeochemical rates and microbial communities across Louisiana salt marsh landscapes

NASA Astrophysics Data System (ADS)

Roberts, B. J.; Chelsky, A.; Bernhard, A. E.; Giblin, A. E.

2017-12-01

Salt marshes are important sites for retention and transformation of carbon and nutrients. Much of our current marsh biogeochemistry knowledge is based on sampling at times and in locations that are convenient, most often vegetated marsh platforms during low tide. Wetland loss rates are high in many coastal regions including Louisiana which has the highest loss rates in the US. This loss not only reduces total marsh area but also changes the relative allocation of subhabitats in the remaining marsh. Climate and other anthropogenic changes lead to further changes including inundation patterns, redox conditions, salinity regimes, and shifts in vegetation patterns across marsh landscapes. We present results from a series of studies examining biogeochemical rates, microbial communities, and soil properties along multiple edge to interior transects within Spartina alterniflora across the Louisiana coast; between expanding patches of Avicennia germinans and adjacent S. alterniflora marshes; in soils associated with the four most common Louisiana salt marsh plants species; and across six different marsh subhabitats. Spartina alterniflora marsh biogeochemistry and microbial populations display high spatial variability related to variability in soil properties which appear to be, at least in part, regulated by differences in elevation, hydrology, and redox conditions. Differences in rates between soils associated with different vegetation types were also related to soil properties with S. alterniflora soils often yielding the lowest rates. Biogeochemical process rates vary significantly across marsh subhabitats with individual process rates differing in their hotspot habitat(s) across the marsh. Distinct spatial patterns may influence the roles that marshes play in retaining and transforming nutrients in coastal regions and highlight the importance of incorporating spatial sampling when scaling up plot level measurements to landscape or regional scales.

Mars Surveyor Program '01 Mars Environmental Compatibility Assessment wet chemistry lab: a sensor array for chemical analysis of the Martian soil.

PubMed

Kounaves, Samuel P; Lukow, Stefan R; Comeau, Brian P; Hecht, Michael H; Grannan-Feldman, Sabrina M; Manatt, Ken; West, Steven J; Wen, Xiaowen; Frant, Martin; Gillette, Tim

2003-07-25

The Mars Environmental Compatibility Assessment (MECA) instrument was designed, built, and flight qualified for the now canceled MSP (Mars Surveyor Program) '01 Lander. The MECA package consisted of a microscope, electrometer, material patch plates, and a wet chemistry laboratory (WCL). The primary goal of MECA was to analyze the Martian soil (regolith) for possible hazards to future astronauts and to provide a better understanding of Martian regolith geochemistry. The purpose of the WCL was to analyze for a range of soluble ionic chemical species and electrochemical parameters. The heart of the WCL was a sensor array of electrochemically based ion-selective electrodes (ISE). After 20 months storage at -23 degrees C and subsequent extended freeze/thawing cycles, WCL sensors were evaluated to determine both their physical durability and analytical responses. A fractional factorial calibration of the sensors was used to obtain slope, intercept, and all necessary selectivity coefficients simultaneously for selected ISEs. This calibration was used to model five cation and three anion sensors. These data were subsequently used to determine concentrations of several ions in two soil leachate simulants (based on terrestrial seawater and hypothesized Mars brine) and four actual soil samples. The WCL results were compared to simulant and soil samples using ion chromatography and inductively coupled plasma optical emission spectroscopy. The results showed that flight qualification and prolonged low-temperature storage conditions had minimal effects on the sensors. In addition, the analytical optimization method provided quantitative and qualitative data that could be used to accurately identify the chemical composition of the simulants and soils. The WCL has the ability to provide data that can be used to "read" the chemical, geological, and climatic history of Mars, as well as the potential habitability of its regolith.

Mars Surveyor Program '01 Mars Environmental Compatibility Assessment wet chemistry lab: a sensor array for chemical analysis of the Martian soil

NASA Technical Reports Server (NTRS)

Kounaves, Samuel P.; Lukow, Stefan R.; Comeau, Brian P.; Hecht, Michael H.; Grannan-Feldman, Sabrina M.; Manatt, Ken; West, Steven J.; Wen, Xiaowen; Frant, Martin; Gillette, Tim

2003-01-01

The Mars Environmental Compatibility Assessment (MECA) instrument was designed, built, and flight qualified for the now canceled MSP (Mars Surveyor Program) '01 Lander. The MECA package consisted of a microscope, electrometer, material patch plates, and a wet chemistry laboratory (WCL). The primary goal of MECA was to analyze the Martian soil (regolith) for possible hazards to future astronauts and to provide a better understanding of Martian regolith geochemistry. The purpose of the WCL was to analyze for a range of soluble ionic chemical species and electrochemical parameters. The heart of the WCL was a sensor array of electrochemically based ion-selective electrodes (ISE). After 20 months storage at -23 degrees C and subsequent extended freeze/thawing cycles, WCL sensors were evaluated to determine both their physical durability and analytical responses. A fractional factorial calibration of the sensors was used to obtain slope, intercept, and all necessary selectivity coefficients simultaneously for selected ISEs. This calibration was used to model five cation and three anion sensors. These data were subsequently used to determine concentrations of several ions in two soil leachate simulants (based on terrestrial seawater and hypothesized Mars brine) and four actual soil samples. The WCL results were compared to simulant and soil samples using ion chromatography and inductively coupled plasma optical emission spectroscopy. The results showed that flight qualification and prolonged low-temperature storage conditions had minimal effects on the sensors. In addition, the analytical optimization method provided quantitative and qualitative data that could be used to accurately identify the chemical composition of the simulants and soils. The WCL has the ability to provide data that can be used to "read" the chemical, geological, and climatic history of Mars, as well as the potential habitability of its regolith.

Habitat complexity influences fine scale hydrological processes and the incidence of stormwater runoff in managed urban ecosystems.

PubMed

Ossola, Alessandro; Hahs, Amy Kristin; Livesley, Stephen John

2015-08-15

Urban ecosystems have traditionally been considered to be pervious features of our cities. Their hydrological properties have largely been investigated at the landscape scale and in comparison with other urban land use types. However, hydrological properties can vary at smaller scales depending upon changes in soil, surface litter and vegetation components. Management practices can directly and indirectly affect each of these components and the overall habitat complexity, ultimately affecting hydrological processes. This study aims to investigate the influence that habitat components and habitat complexity have upon key hydrological processes and the implications for urban habitat management. Using a network of urban parks and remnant nature reserves in Melbourne, Australia, replicate plots representing three types of habitat complexity were established: low-complexity parks, high-complexity parks, and high-complexity remnants. Saturated soil hydraulic conductivity in low-complexity parks was an order of magnitude lower than that measured in the more complex habitat types, due to fewer soil macropores. Conversely, soil water holding capacity in low-complexity parks was significantly higher compared to the two more complex habitat types. Low-complexity parks would generate runoff during modest precipitation events, whereas high-complexity parks and remnants would be able to absorb the vast majority of rainfall events without generating runoff. Litter layers on the soil surface would absorb most of precipitation events in high-complexity parks and high-complexity remnants. To minimize the incidence of stormwater runoff from urban ecosystems, land managers could incrementally increase the complexity of habitat patches, by increasing canopy density and volume, preserving surface litter and maintaining soil macropore structure. Copyright © 2015 Elsevier Ltd. All rights reserved.

Statespace geometry of puff formation in pipe flow

NASA Astrophysics Data System (ADS)

Budanur, Nazmi Burak; Hof, Bjoern

2017-11-01

Localized patches of chaotically moving fluid known as puffs play a central role in the transition to turbulence in pipe flow. Puffs coexist with the laminar flow and their large-scale dynamics sets the critical Reynolds number: When the rate of puff splitting exceeds that of decaying, turbulence in a long pipe becomes sustained in a statistical sense. Since puffs appear despite the linear stability of the Hagen-Poiseuille flow, one expects them to emerge from the bifurcations of finite-amplitude solutions of Navier-Stokes equations. In numerical simulations of pipe flow, Avila et al., discovered a pair of streamwise localized relative periodic orbits, which are time-periodic solutions with spatial drifts. We combine symmetry reduction and Poincaré section methods to compute the unstable manifolds of these orbits, revealing statespace structures associated with different stages of puff formation.

The 5-HT(4) agonists cisapride, mosapride, and CJ-033466, a Novel potent compound, exhibit different human ether-a-go-go-related gene (hERG)-blocking activities.

PubMed

Toga, Tetsuo; Kohmura, Yumi; Kawatsu, Ryoichi

2007-10-01

The blocking effect of three 5-HT(4) agonists, cisapride, mosapride, and the newly discovered CJ-033466 on the human ether-a-go-go-related gene (hERG) channel was studied using a whole cell patch-clamp technique in HEK293 cells. Cisapride was found to be the most potent of the hERG blockers. CJ-033466 had the widest safety margin between its hERG blocking activity and 5-HT(4) agonism among the tested compounds. This suggests a lower clinical risk of cardiac arrhythmia in CJ-033466 compared with the other 2 agonists. Therefore, CJ-033466 has the potential to be a drug with higher therapeutic efficacy and less cardiac risk than both cisapride and mosapride.

Mars Under the Microscope (stretched)

NASA Technical Reports Server (NTRS)

2004-01-01

This magnified look at the martian soil near the Mars Exploration Rover Opportunity's landing site, Meridiani Planum, shows coarse grains sprinkled over a fine layer of sand. The image was captured on the 10th day, or sol, of the rover's mission by its microscopic imager, located on the instrument deployment device, or 'arm.' Scientists are intrigued by the spherical rocks, which can be formed by a variety of geologic processes, including cooling of molten lava droplets and accretion of concentric layers of material around a particle or 'seed.'

The examined patch of soil is 3 centimeters (1.2 inches) across. The circular grain in the lower left corner is approximately 3 millimeters (.12 inches) across, or about the size of a sunflower seed.

This stretched color composite was obtained by merging images acquired with the orange-tinted dust cover open and closed. The varying hints of orange suggest differences in mineral composition. The blue tint at the lower right corner is a tag used by scientists to indicate that the dust cover is closed.

Mars Under the Microscope (color)

NASA Technical Reports Server (NTRS)

2004-01-01

This magnified look at the martian soil near the Mars Exploration Rover Opportunity's landing site, Meridiani Planum, shows coarse grains sprinkled over a fine layer of sand. The image was captured by the rover's microscopic imager on the 10th day, or sol, of its mission and roughly approximates the color a human eye would see. Scientists are intrigued by the spherical rocks, which can be formed by a variety of geologic processes, including cooling of molten lava droplets and accretion of concentric layers of material around a particle or 'seed.'

The examined patch of soil is 3 centimeters (1.2 inches) across. The circular grain in the lower left corner is approximately 3 millimeters (.12 inches) across, or about the size of a sunflower seed.

This color composite was obtained by merging images acquired with the orange-tinted dust cover in both its open and closed positions. The blue tint at the lower right corner is a tag used by scientists to indicate that the dust cover is closed.

A study of the polarization of light scattered by vegetation. M.S. Thesis

NASA Technical Reports Server (NTRS)

Woessner, P. N.

1985-01-01

This study was undertaken in order to better understand the factors that govern the polarization of light scattered from vegetation and soils. The intensity and polarization of light scattered by clover and grass in vivo and soil were measured at a number of different angles of incidence and reflectance. Both individual leaves and natural patches of leaves were measured. The light transmitted through the leaves was found to be negatively polarized. The light scattered from the upper leaf surface was found to be positively polarized in a manner which could be accounted for qualitatively but not quantitatively by the Fresnel reflection coefficients modified by a shadowing function of the form cos sup2 (g/2), where g is the phase angle. Findings indicate that the polarization of light scattered by vegetation is a more complex process than previously thought, and that besides the surface-scattered component of light, the volume-scattered and multiply-scattered components also contribute significantly to the polarization.

Permafrost Meta-Omics and Climate Change

NASA Astrophysics Data System (ADS)

Mackelprang, Rachel; Saleska, Scott R.; Jacobsen, Carsten Suhr; Jansson, Janet K.; Taş, Neslihan

2016-06-01

Permanently frozen soil, or permafrost, covers a large portion of the Earth's terrestrial surface and represents a unique environment for cold-adapted microorganisms. As permafrost thaws, previously protected organic matter becomes available for microbial degradation. Microbes that decompose soil carbon produce carbon dioxide and other greenhouse gases, contributing substantially to climate change. Next-generation sequencing and other -omics technologies offer opportunities to discover the mechanisms by which microbial communities regulate the loss of carbon and the emission of greenhouse gases from thawing permafrost regions. Analysis of nucleic acids and proteins taken directly from permafrost-associated soils has provided new insights into microbial communities and their functions in Arctic environments that are increasingly impacted by climate change. In this article we review current information from various molecular -omics studies on permafrost microbial ecology and explore the relevance of these insights to our current understanding of the dynamics of permafrost loss due to climate change.

Elevated CO2 and O3 effects on ectomycorrhizal fungal root tip communities in consideration of a post-agricultural soil nutrient gradient legacy

Treesearch

Carrie Andrew; Erik A. Lilleskov

2014-01-01

Despite the critical role of EMF in nutrient and carbon (C) dynamics, combined effects of global atmospheric pollutants on ectomycorrhizal fungi (EMF) are unclear. Here, we present research on EMF root-level community responses to elevated CO2 and O3. We discovered that belowground EMF community richness and similarity were...

Ambient ammonia measurements using laser photo-acoustic spectroscopy

NASA Technical Reports Server (NTRS)

Aldridge, M. D., III; Copeland, G. E.; Harward, C. N.

1981-01-01

Ammonia concentrations reached minimal levels (approximately 0.1 ppb) in early winter, followed by a sudden later winter increase. A direct relationship between ambient ammonia levels and air temperature was inferred from the data (linear correlation coefficient r=0.53). Ammonia concentrations were determined to be directly related to the absolute humidity of the air (r=0.72); a weaker relationship between ammonia concentrations and relative humidity was discovered (r=0.37). The data also indicated that ammonia levels were generally higher within continental air masses than those of maritime origin. Soil parameters such as pH and moisture content were found to have a major bearing on the release of gaseous ammonia from soils in the region.

Pretreatment of pericardial patches with antibiotics does not alter patch healing in vivo.

PubMed

Bai, Hualong; Kuwahara, Go; Wang, Mo; Brownson, Kirstyn E; Foster, Trenton R; Yamamoto, Kota; Xing, Ying; Dardik, Alan

2016-04-01

Pretreatment with antibiotics is commonly performed before surgical implantation of prosthetic materials. We previously showed that pericardial patches are infiltrated by macrophages and arterial stem cells after implantation into an artery. We hypothesized that antibiotic pretreatment would diminish the number of cells infiltrating into the patch, potentially affecting early neointimal formation. Bovine pericardial patches were pretreated with saline, bacitracin (500 U/mL), or cephalexin (10 mg/mL) for 30 minutes before implantation into the Wistar rat infrarenal aorta. Patches were retrieved on day 7 or day 30 and analyzed for histology and cell infiltration. Markers of proliferation, apoptosis, vascular cell identity, and M1 and M2 macrophage subtypes were examined using immunofluorescence and immunohistochemistry. Extracted proteins were analyzed by Western blot. At day 7, pericardial patches pretreated with bacitracin or cephalexin showed similar amounts of neointimal thickening (P = .55) and cellular infiltration (P = .42) compared with control patches. Patches pretreated with antibiotics showed similar proliferation (P = .09) and apoptosis (P = .84) as control patches. The cell composition of the neointima in pretreated patches was similar to control patches, with a thin endothelial layer overlying a thin layer of smooth muscle cells (P = .45), and containing similar numbers of CD34-positive (P = .26) and vascular endothelial growth factor receptor 2-positive (P = .31) cells. Interestingly, within the body of the patch, there were fewer macrophages (P = .0003) and a trend towards fewer endothelial progenitor cells (P = .051). No M1 macrophages were found in or around any of the patches. M2 macrophages were present around the patches, and there was no difference in numbers of M2 macrophages surrounding control patches and patches pretreated with antibiotics (P = .24). There was no difference in neointimal thickness at day 30 between control patches and patches pretreated with antibiotics (P = .52). Pretreatment of bovine pericardial patches with the antibiotics bacitracin or cephalexin has no detrimental effect on early patch healing, with similar neointimal thickness, cellular infiltration, and numbers of M2 macrophages compared with control patches. These results suggest that the host vessel response to patch angioplasty using pericardial patches is adaptive remodeling (eg, arterial healing). Published by Elsevier Inc.

Patch dynamics and the timing of colonization-abandonment events by male Kirtland’s Warblers in an early succession habitat

USGS Publications Warehouse

Donner, Deahn M.; Ribic, Christine; Probst, John R.

2010-01-01

Habitat colonization and abandonment affects the distribution of a species in space and time, ultimately influencing the duration of time habitat is used and the total area of habitat occupied in any given year. Both aspects have important implications to long-term conservation planning. The importance of patch isolation and area to colonization–extinction events is well studied, but little information exists on how changing regional landscape structure and population dynamics influences the variability in the timing of patch colonization and abandonment events. We used 26 years of Kirtland’s Warbler (Dendroica kirtlandii) population data taken during a habitat restoration program (1979–2004) across its historical breeding range to examine the influence of patch attributes and temporal large-scale processes, specifically the rate of habitat turnover and fraction of occupied patches, on the year-to-year timing of patch colonization and abandonment since patch origin. We found the timing of patch colonization and abandonment was influenced by patch and large-scale regional factors. In this system, larger patches were typically colonized earlier (i.e., at a younger age) and abandoned later than smaller patches. Isolated patches (i.e., patches farther from another occupied patch) were generally colonized later and abandoned earlier. Patch habitat type affected colonization and abandonment; colonization occurred at similar patch ages between plantation and wildfire areas (9 and 8.5 years, respectively), but plantations were abandoned at earlier ages (13.9 years) than wildfire areas (16.4 years) resulting in shorter use. As the fraction of occupied patches increased, patches were colonized and abandoned at earlier ages. Patches were abandoned at older ages when the influx of new habitat patches was at low and high rates. Our results provide empirical support for the temporal influence of patch dynamics (i.e., patch destruction, creation, and succession) on local colonization and extinction processes that help explain large-scale patterns of habitat occupancy. Results highlight the need for practitioners to consider the timing of habitat restoration as well as total amount and spatial arrangement of habitat to sustain populations.

Ethinyl Estradiol and Norelgestromin Transdermal Patch

MedlinePlus

... the skin. One patch is applied once a week for 3 weeks, followed by a patch-free week. Follow the directions on your prescription label carefully, ... new patch on the same day of the week (the Patch Change Day). Apply a new patch ...

Critical Evaluation of Soil Pore Water Extraction Methods on a Natural Soil

NASA Astrophysics Data System (ADS)

Orlowski, Natalie; Pratt, Dyan; Breuer, Lutz; McDonnell, Jeffrey

2017-04-01

Soil pore water extraction is an important component in ecohydrological studies for the measurement of δ2H and δ18O. The effect of pore water extraction technique on resultant isotopic signature is poorly understood. Here we present results of an intercomparison of commonly applied lab-based soil water extraction techniques on a natural soil: high pressure mechanical squeezing, centrifugation, direct vapor equilibration, microwave extraction, and two types of cryogenic extraction systems. We applied these extraction methods to a natural summer-dry (gravimetric water contents ranging from 8% to 15%) glacio-lacustrine, moderately fine textured clayey soil; excavated in 10 cm sampling increments to a depth of 1 meter. Isotope results were analyzed via OA-ICOS and compared for each extraction technique that produced liquid water. From our previous intercomparison study among the same extraction techniques but with standard soils, we discovered that extraction methods are not comparable. We therefore tested the null hypothesis that all extraction techniques would be able to replicate the natural evaporation front in a comparable manner occurring in a summer-dry soil. Our results showed that the extraction technique utilized had a significant effect on the soil water isotopic composition. High pressure mechanical squeezing and vapor equilibration techniques produced similar results with similarly sloped evaporation lines. Due to the nature of soil properties and dryness, centrifugation was unsuccessful in obtaining pore water for isotopic analysis. Cryogenic extraction on both tested techniques produced similar results to each other on a similar sloping evaporation line, but dissimilar with depth.

Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities.

PubMed

Uroz, S; Oger, P; Tisserand, E; Cébron, A; Turpault, M-P; Buée, M; De Boer, W; Leveau, J H J; Frey-Klett, P

2016-06-15

The impacts of plant species on the microbial communities and physico-chemical characteristics of soil are well documented for many herbs, grasses and legumes but much less so for tree species. Here, we investigate by rRNA and ITS amplicon sequencing the diversity of microorganisms from the three domains of life (Archaea, Bacteria and Eukaryota:Fungi) in soil samples taken from the forest experimental site of Breuil-Chenue (France). We discovered significant differences in the abundance, composition and structure of the microbial communities associated with two phylogenetically distant tree species of the same age, deciduous European beech (Fagus sylvatica) and coniferous Norway spruce (Picea abies Karst), planted in the same soil. Our results suggest a significant effect of tree species on soil microbiota though in different ways for each of the three microbial groups. Fungal and archaeal community structures and compositions are mainly determined according to tree species, whereas bacterial communities differ to a great degree between rhizosphere and bulk soils, regardless of the tree species. These results were confirmed by quantitative PCR, which revealed significant enrichment of specific bacterial genera, such as Burkholderia and Collimonas, known for their ability to weather minerals within the tree root vicinity.

Species diversity of remnant calcareous grasslands in south eastern Germany depends on litter cover and landscape structure

NASA Astrophysics Data System (ADS)

Huber, Stephanie; Huber, Birgit; Stahl, Silvia; Schmid, Christoph; Reisch, Christoph

2017-08-01

Species diversity depends on, often interfering, multiple ecological drivers. Comprehensive approaches are hence needed to understand the mechanisms determining species diversity. In this study, we analysed the impact of vegetation structure, soil properties and fragmentation on the plant species diversity of remnant calcareous grasslands, therefore, in a comparative approach. We determined plant species diversity of 18 calcareous grasslands in south eastern Germany including all species and grassland specialists separately. Furthermore, we analysed the spatial structure of the grasslands as a result of fragmentation during the last 150 years (habitat area, distance to the nearest calcareous grassland and connectivity in 1830 and 2013). We also collected data concerning the vegetation structure (height of the vegetation, cover of bare soil, grass and litter) and the soil properties (content of phosphorous and potassium, ratio of carbon and nitrogen) of the grassland patches. Data were analysed using Bayesian multiple regressions. We observed a habitat loss of nearly 80% and increasing isolation between grasslands since 1830. In the Bayesian multiple regressions the species diversity of the studied grasslands depended negatively on cover of litter and to a lower degree on the distance to the nearest calcareous grassland in 2013, whereas soil properties had no significant impact. Our study supports the observation that vegetation structure, which strongly depends on land use, is often more important for the species richness of calcareous grasslands than fragmentation or soil properties. Even small and isolated grasslands may, therefore, contribute significantly to the conservation of species diversity, when they are still grazed.

Savanna Vegetation Dynamics and their Influence on Landscape-Scale C, N, and P Biogeochemistry

NASA Astrophysics Data System (ADS)

Boutton, T. W.; Zhou, Y.; Wu, X. B.; Hyodo, A.

2017-12-01

Soil carbon (C), nitrogen (N) and phosphorus (P) cycles are strongly interlinked and controlled through biological processes, and the P cycle is further controlled through geochemical processes. In grasslands, savannas, and other dryland ecosystems throughout the world, woody plant encroachment often modifies soil C, N, and P stores, although it remains unknown if these three elements change proportionally in response to this vegetation change. We evaluated proportional changes and spatial patterns of soil organic C (SOC), total N (TN), and total P (TP) following woody encroachment by taking spatially-explicit soil cores to a depth of 1.2 m across a subtropical savanna landscape which has undergone encroachment by trees and shrubs during the past century in the Rio Grande Plains, USA. SOC and TN were coupled with respect to increasing magnitudes and spatial patterns along the soil profile following woody encroachment. In contrast, TP increased slower than SOC and TN in surface soils, but faster in subsurface soils. Spatial patterns of TP strongly resembled those of vegetation cover throughout the soil profile, but differed from those of SOC and TN, especially in deeper portions of the profile. The encroachment of woody plants into this P-limited ecosystem resulted in the accumulation of proportionally less soil P compared to C and N in surface soils; however, proportionally more P accrued in deeper portions of the profile beneath woody patches where alkaline soil pH and high carbonate concentrations would favor precipitation of P as relatively insoluble calcium phosphates. Structural equation models (SEM) showed that fine root density explained the greatest proportion of variation in SOC, TN, and TP in the surface soil. In deeper portions of the profile, SEM showed that silt and clay explained much of the variation in SOC and TN, while soil pH strongly controlled TP. This imbalanced relationship highlights that the relative importance of biotic vs. abiotic mechanisms controlling C and N vs. P accumulation following vegetation change may vary with depth in the profile. Our findings suggest that efforts to incorporate the effects of land cover changes into coupled climate-biogeochemical models should attempt to represent C-N-P imbalances that may arise following vegetation change.

Rainier Mesa CAU Infiltration Model using INFILv3

DOE Office of Scientific and Technical Information (OSTI.GOV)

Levitt, Daniel G.; Kwicklis, Edward M.

The outline of this presentation are: (1) Model Inputs - DEM, Precipitation, Air temp, Soil props, Surface geology, Vegetation; (2) Model Pre-processing - Runoff Routing and sinks, Slope and Azimuth, Soil Ksat reduction with slope (to mitigate bathtub ring), Soil-Bedrock Interface permeabilities; (3) Model Calibration - ET using PEST, Chloride mass balance data, Streamflow using PEST; (4) Model Validation - Streamflow data not used for calibration; (5) Uncertainty Analysis; and (6) Results. Conclusions are: (1) Average annual infiltration rates =11 to 18 mm/year for RM domain; (2) Average annual infiltration rates = 7 to 11 mm/year for SM domain; (3)more » ET = 70% of precipitation for both domains; (4) Runoff = 8-9% for RM; and 22-24% for SM - Apparently high average runoff is caused by the truncation of the lowerelevation portions of watersheds where much of the infiltration of runoff waters would otherwise occur; (5) Model results are calibrated to measured ET, CMB data, and streamflow observations; (6) Model results are validated using streamflow observations discovered after model calibration was complete; (7) Use of soil Ksat reduction with slope to mitigate bathtub ring was successful (based on calibration results); and (8) Soil-bedrock K{_}interface is innovative approach.« less

Northward range extension of an endemic soil decomposer with a distinct trophic position.

PubMed

Melody, Carol; Schmidt, Olaf

2012-12-23

Ecological niche theory asserts that invading species become established only if introduced propagules survive stochastic mortality and can exploit resources unconsumed by resident species. Because their transportation is not controlled by plant health or biosecurity regulations, soil macrofauna decomposers, including earthworms are probably introduced frequently into non-native soils. Yet even with climatic change, exotic earthworm species from southern Europe have not been reported to become established in previously glaciated areas of northern Europe that already have trophically differentiated earthworm communities of 'peregrine' species. We discovered established populations of the earthworm Prosellodrilus amplisetosus (Lumbricidae), a member of a genus endemic to southern France, in six habitats of an urban farm in Dublin, Ireland, about 1000 km north of the genus's endemic range. Not only was P. amplisetosus the dominant endogeic (geophagous) earthworm species in two habitats, it also occupied a significantly different trophic position from the resident species, as evinced by stable isotope ratio analysis. The suggested ability of this non-native species to feed on and assimilate isotopically more enriched soil carbon (C) and nitrogen fractions that are inaccessible to resident species portends potential implications of decomposer range expansions for soil functioning including C sequestration.

Patch occupancy and dispersal of spruce grouse on the edge of its range in Maine

USGS Publications Warehouse

Whitcomb, S.A.; Servello, F.A.; O'Connell, A.F.

1996-01-01

We surveyed 18 habitat patches (black spruce (Picea marinana) - tamarack (Larix larcina) wetlands) for spruce grouse (Dendragapus canadensis canadensis) on Mount Desert Island, Maine, during April-May in 1992 and 1993 to determine patch occupancy relative to patch area. We also equipped nine juvenile grouse with radio transmitters to determine movement and habitat use outside of patches during autumn dispersal. The 2 large patches (77 and 269 ha), 5 of 6 medium-sized (11-26 ha) patches, and 1 of 10 small (4-8 ha) patches were occupied. Spruce grouse occupied smaller habitat patches than previously reported, and occupied patches were closer (P < 0.05) to the nearest occupied patch (x = 1.2 km) than were unoccupied patches (x = 2.5 km). Eight of nine juvenile grouse left their natal habitat patch during autumn dispersal, and net dispersal distance (x = 2.3 km) was greater than that reported for grouse in areas with more contiguous habitat. Dispersing juveniles used all major forest types and 33 % of relocations were in deciduous forest. Thus, deciduous forest was not an absolute dispersal barrier.

In-Situ Hydraulic Conductivities of Soils and Anomalies at a Future Biofuel Production Site

NASA Astrophysics Data System (ADS)

Williamson, M. F.; Jackson, C. R.; Hale, J. C.; Sletten, H. R.

2010-12-01

Forested hillslopes of the Upper Coastal Plain at the Savannah River Site, SC, feature a shallow clay loam argillic layer with low median saturated hydraulic conductivity. Observations from a grid of shallow, maximum-rise piezometers indicate that perching on this clay layer is common. However, flow measurements from an interflow-interception trench indicate that lateral flow is rare and most soil water percolates through the clay layer. We hypothesize that the lack of frequent lateral flow is due to penetration of the clay layer by roots of pine trees. We used ground penetrating radar (GPR) to map the soil structure and potential anomalies, such as root holes, down to two meters depth at three 10×10-m plots. At each plot, a 1×10-m trench was later back-hoe excavated along a transect that showed the most anomalies on the GPR maps. Each trench was excavated at 0.5-m intervals until the clay layer was reached (two plots were excavated to a final depth of 0.875 m and the third plot was excavated to a final depth of 1.0 m). At each interval, compact constant-head permeameters (CCHPs) were used to measure in-situ hydraulic conductivities in the clay-loam matrix and in any visually apparent anomalies. Conductivity was also estimated using a second 1×10-m transect of CCHP measurements taken within randomly placed augur holes. Additional holes targeted GPR anomalies. The second transect was created in case the back-hoe impacted conductivity readings. High-conductivity anomalies were also visually investigated by excavating with a shovel. Photographs of soil wetness were taken at visually apparent anomalies with a multispectral camera. We discovered that all visually apparent anomalies found are represented on the GPR maps, but that not all of the predicted anomalies on the GPR maps are visually apparent. We discovered that tree root holes create anomalies, but that there were also many conductivity anomalies that could not be visually distinguished from low-conductivity soil.

Nitrogen immobilization by wood-chip application: Protecting water quality in a northern hardwood forest

USGS Publications Warehouse

Homyak, P.M.; Yanai, R.D.; Burns, Douglas A.; Briggs, R.D.; Germain, R.H.

2008-01-01

Forest harvesting disrupts the nitrogen cycle, which may affect stream water quality by increasing nitrate concentrations, reducing pH and acid neutralizing capacity, and mobilizing aluminum and base cations. We tested the application of wood chips derived from logging slash to increase immobilization of N after harvesting, which should reduce nitrate flux to streams. In August 2004, a stand of northern hardwoods was patch-clearcut in the Catskill Mountains, NY, and four replicates of three treatments were implemented in five 0.2-ha cut patches. Wood chips were applied to the soil surface at a rate equivalent to the amount of slash smaller than eight inches in diameter (1?? treatment). A second treatment doubled that rate (2??), and a third treatment received no chips (0??). Additionally, three uncut reference plots were established in nearby forested areas. Ion exchange resin bags and soil KCl-extractions were used to monitor nitrate availability in the upper 5-10 cm of soil approximately every seven weeks, except in winter. Resin bags indicated that the wood chips retained 30% or 42% of the nitrate pulse, while for KCl extracts, the retention rate was 78% or 100% of the difference between 0?? and uncut plots. During the fall following harvest, wood-chip treated plots had resin bag soil nitrate concentrations about 25% of those in 0?? plots (p = 0.0001). In the first growing season after the cut, nitrate concentrations in wood-chip treated plots for KCl extracts were 13% of those in 0?? treatments (p = 0.03) in May and about half those in 0?? treatments (p = 0.01) in July for resin bags. During spring snowmelt, however, nitrate concentrations were high and indistinguishable among treatments, including the uncut reference plots for resin bags and below detection limit for KCl extracts. Wood chips incubated in litterbags had an initial C:N of 125:1, which then decreased to 70:1 after one year of field incubation. These changes in C:N values indicate that the wood-chip application can potentially immobilize between 19 and 38 kg N ha-1 in the first year after harvesting, depending on the rate of wood-chip application. Our results suggest that the application of wood chips following harvesting operations can contribute to the protection of water quality and warrant additional research as a new Best Management Practice following cutting in regions that receive elevated levels of atmospheric N deposition. ?? 2008 Elsevier B.V. All rights reserved.

Runoff and erosion in a pinon-juniper woodland: Influence of vegetation patches

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reid, K.D.; Wilcox, B.P.; Breshears, D.D.

1999-12-01

In many semiarid regions, runoff and erosion differ according to vegetation patch type. These differences, although hypothesized to fundamentally affect ecological processes, have been poorly quantified. In a semiarid pinion-juniper woodland [Pinus edulis Engelm. and Juniperus monosperma (Engelm) Sarg.] in northern New Mexico, the authors measured runoff and erosion from the three patch types that compose these woodlands: Canopy patches (those beneath woody plants), vegetated patched in intercanopy areas, and bare patches in intercanopy areas. The bare intercanopy patches exhibited the highest rates, followed by vegetated intercanopy patches and then by canopy patches. Large convective summer storms, though relatively infrequent,more » generated much of the runoff and most of the sediment; prolonged frontal storms were capable of generating considerable runoff but little sediment. A portion of the runoff and most of the sediment generated from bare intercanopy patches was redistributed down-slope, probably to adjacent vegetated intercanopy patches, demonstrating connectivity between these two patch types. Their results indicate that there are significant and important differences in runoff and sediment production from the three patch types; that bare intercanopy patches act as sources of both water and sediment for the vegetated intercanopy patches; and that the transfer of water and sediment at small scales is both frequent enough and substantial enough to be considered ecologically significant.« less

The soil physics contributions of Edgar Buckingham

USGS Publications Warehouse

Nimmo, J.R.; Landa, E.R.

2005-01-01

During 1902 to 1906 as a soil physicist at the USDA Bureau of Soils (BOS), Edgar Buckingham originated the concepts of matric potential, soil-water retention curves, specific water capacity, and unsaturated hydraulic conductivity (K) as a distinct property of a soil. He applied a formula equivalent to Darcy's law (though without specific mention of Darcy's work) to unsaturated flow. He also contributed significant research on quasi-empirical formulas for K as a function of water content, water flow in capillary crevices and in thin films, and scaling. Buckingham's work on gas flow in soils produced paradigms that are consistent with our current understanding. His work on evaporation elucidated the concept of self-mulching and produced sound and sometimes paradoxical generalizations concerning conditions that favor or retard evaporation. Largely overshadowing those achievements, however, is that he launched a theory, still accepted today, that could predict transient water content as a function of time and space. Recently discovered documents reveal some of the arguments Buckingham had with BOS officials, including the text of a two-paragraph conclusion of his famous 1907 report on soil water, and the official letter documenting rejection of that text. Strained interpersonal relations motivated the departure of Buckingham and other brilliant physicists (N.E. Dorsey, F.H. King, and Lyman Briggs) from the BOS during 1903 to 1906. Given that Buckingham and his BOS colleagues had been rapidly developing the means of quantifying unsaturated flow, these strained relations probably slowed the advancement of unsaturated flow theory. ?? Soil Science Society of America.

Spatial variability of atrazine and metolachlor dissipation on dryland no-tillage crop fields in Colorado.

PubMed

Bridges, Melissa; Henry, W Brien; Shaner, Dale L; Khosla, R; Westra, Phil; Reich, Robin

2008-01-01

An area of interest in precision farming is variable-rate application of herbicides to optimize herbicide use efficiency and minimize negative off-site and non-target effects. Site-specific weed management based on field scale management zones derived from soil characteristics known to affect soil-applied herbicide efficacy could alleviate challenges posed by post-emergence precision weed management. Two commonly used soil-applied herbicides in dryland corn (Zea mays L.) production are atrazine and metolachlor. Accelerated dissipation of atrazine has been discovered recently in irrigated corn fields in eastern Colorado. The objectives of this study were (i) to compare the rates of dissipation of atrazine and metolachlor across different soil zones from three dryland no-tillage fields under laboratory incubation conditions and (ii) to determine if rapid dissipation of atrazine and/or metolachlor occurred in dryland soils. Herbicide dissipation was evaluated at time points between 0 and 35 d after soil treatment using a toluene extraction procedure with GC/MS analysis. Differential rates of atrazine and metolachlor dissipation occurred between two soil zones on two of three fields evaluated. Accelerated atrazine dissipation occurred in soil from all fields of this study, with half-lives ranging from 1.8 to 3.2 d in the laboratory. The rapid atrazine dissipation rates were likely attributed to the history of atrazine use on all fields investigated in this study. Metolachlor dissipation was not considered accelerated and exhibited half-lives ranging from 9.0 to 10.7 d in the laboratory.

Microbiology Meets Archaeology: Soil Microbial Communities Reveal Different Human Activities at Archaic Monte Iato (Sixth Century BC).

PubMed

Margesin, Rosa; Siles, José A; Cajthaml, Tomas; Öhlinger, Birgit; Kistler, Erich

2017-05-01

Microbial ecology has been recognized as useful in archaeological studies. At Archaic Monte Iato in Western Sicily, a native (indigenous) building was discovered. The objective of this study was the first examination of soil microbial communities related to this building. Soil samples were collected from archaeological layers at a ritual deposit (food waste disposal) in the main room and above the fireplace in the annex. Microbial soil characterization included abundance (cellular phospholipid fatty acids (PLFA), viable bacterial counts), activity (physiological profiles, enzyme activities of viable bacteria), diversity, and community structure (bacterial and fungal Illumina amplicon sequencing, identification of viable bacteria). PLFA-derived microbial abundance was lower in soils from the fireplace than in soils from the deposit; the opposite was observed with culturable bacteria. Microbial communities in soils from the fireplace had a higher ability to metabolize carboxylic and acetic acids, while those in soils from the deposit metabolized preferentially carbohydrates. The lower deposit layer was characterized by higher total microbial and bacterial abundance and bacterial richness and by a different carbohydrate metabolization profile compared to the upper deposit layer. Microbial community structures in the fireplace were similar and could be distinguished from those in the two deposit layers, which had different microbial communities. Our data confirmed our hypothesis that human consumption habits left traces on microbiota in the archaeological evidence; therefore, microbiological residues as part of the so-called ecofacts are, like artifacts, key indicators of consumer behavior in the past.

Potential soil carbon sequestration in overgrazed grassland ecosystems

NASA Astrophysics Data System (ADS)

Conant, Richard T.; Paustian, Keith

2002-12-01

Excessive grazing pressure is detrimental to plant productivity and may lead to declines in soil organic matter. Soil organic matter is an important source of plant nutrients and can enhance soil aggregation, limit soil erosion, and can also increase cation exchange and water holding capacities, and is, therefore, a key regulator of grassland ecosystem processes. Changes in grassland management which reverse the process of declining productivity can potentially lead to increased soil C. Thus, rehabilitation of areas degraded by overgrazing can potentially sequester atmospheric C. We compiled data from the literature to evaluate the influence of grazing intensity on soil C. Based on data contained within these studies, we ascertained a positive linear relationship between potential C sequestration and mean annual precipitation which we extrapolated to estimate global C sequestration potential with rehabilitation of overgrazed grassland. The GLASOD and IGBP DISCover data sets were integrated to generate a map of overgrazed grassland area for each of four severity classes on each continent. Our regression model predicted losses of soil C with decreased grazing intensity in drier areas (precipitation less than 333 mm yr-1), but substantial sequestration in wetter areas. Most (93%) C sequestration potential occurred in areas with MAP less than 1800 mm. Universal rehabilitation of overgrazed grasslands can sequester approximately 45 Tg C yr-1, most of which can be achieved simply by cessation of overgrazing and implementation of moderate grazing intensity. Institutional level investments by governments may be required to sequester additional C.

An extended patch-dynamic framework for food chains in fragmented landscapes

PubMed Central

Liao, Jinbao; Chen, Jiehong; Ying, Zhixia; Hiebeler, David E.; Nijs, Ivan

2016-01-01

Habitat destruction, a key determinant of species loss, can be characterized by two components, patch loss and patch fragmentation, where the former refers to the reduction in patch availability, and the latter to the division of the remaining patches. Classical metacommunity models have recently explored how food web dynamics respond to patch loss, but the effects of patch fragmentation have largely been overlooked. Here we develop an extended patch-dynamic model that tracks the patch occupancy of the various trophic links subject to colonization-extinction-predation dynamics by incorporating species dispersal with patch connectivity. We found that, in a simple food chain, species at higher trophic level become extinct sooner with increasing patch loss and fragmentation due to the constraint in resource availability, confirming the trophic rank hypothesis. Yet, effects of fragmentation on species occupancy are largely determined by patch loss, with maximal fragmentation effects occurring at intermediate patch loss. Compared to the spatially explicit simulations that we also performed, the current model with pair approximation generates similar community patterns especially in spatially clustered landscapes. Overall, our extended framework can be applied to model more complex food webs in fragmented landscapes, broadening the scope of existing metacommunity theory. PMID:27608823

Public-health assessment for Mottolo Pig Farm, Raymond, Rockingham County, New Hampshire, Region 1. CERCLIS NO. NHD980503361. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1992-07-20

The Mottolo Pig Farm National Priorities List (NPL) Site is located east of Blueberry Hill Road, in Rockingham County, approximately three miles west of the center of Raymond, New Hampshire. Contamination at the Mottolo Pig Farm Site includes contaminated groundwater, soil, surface water, and sediments. Site contaminants consist primarily of various volatile organic compounds (VOCs). Acid and base/neutral extractable compounds (ABNs) and metals have also been identified at the site. The site was initially discovered in April of 1979 and the U.S. Environmental Protection Agency (EPA) began an emergency action to remove buried drums and pails at the site inmore » September of 1980. There are no known documented completed exposure pathways for contaminated media present at the Mottolo Pig Farm Site. Exposure pathways of potential concern include direct contact with contaminated on-site soils and surface waters; inhalation of contaminated on-site soils as fugitive dust; and incidental ingestion of contaminated on-site soils and surface waters.« less

Discovering the Giant Nest Architecture of Grass-Cutting Ants, Atta capiguara (Hymenoptera, Formicidae)

PubMed Central

Forti, Luiz Carlos; Protti de Andrade, Ana Paula; Camargo, Roberto da Silva; Caldato, Nadia; Moreira, Aldenise Alves

2017-01-01

Atta capiguara is a grass-cutting ant species frequently found in Cerrado biome. However, little is known about the giant nest architecture of this ant. In this study, we investigated the architecture of three A. capiguara nests from a fragment of Cerrado in Botucatu, São Paulo, Brazil. Casts were made of the nests by filling them with cement to permit better visualization of internal structures such as chambers and tunnels. After excavation, the depth and dimensions (length, width, and height) of the chambers were measured. The results showed the shape of Atta capiguara nests consisting of mounds of loose soil with unique features resembling a conic section. The fungus chambers were found distant from the mound of loose soil and were spaced apart and distributed laterally at the soil profile. The waste chambers were located beneath the largest mound of loose soil. Both the fungus and waste chambers were separated and distant. Our study contributes to a better understanding of the so far unknown nest architecture of the grass-cutting ant A. capiguara. PMID:28350352

Culture-independent discovery of natural products from soil metagenomes.

PubMed

Katz, Micah; Hover, Bradley M; Brady, Sean F

2016-03-01

Bacterial natural products have proven to be invaluable starting points in the development of many currently used therapeutic agents. Unfortunately, traditional culture-based methods for natural product discovery have been deemphasized by pharmaceutical companies due in large part to high rediscovery rates. Culture-independent, or "metagenomic," methods, which rely on the heterologous expression of DNA extracted directly from environmental samples (eDNA), have the potential to provide access to metabolites encoded by a large fraction of the earth's microbial biosynthetic diversity. As soil is both ubiquitous and rich in bacterial diversity, it is an appealing starting point for culture-independent natural product discovery efforts. This review provides an overview of the history of soil metagenome-driven natural product discovery studies and elaborates on the recent development of new tools for sequence-based, high-throughput profiling of environmental samples used in discovering novel natural product biosynthetic gene clusters. We conclude with several examples of these new tools being employed to facilitate the recovery of novel secondary metabolite encoding gene clusters from soil metagenomes and the subsequent heterologous expression of these clusters to produce bioactive small molecules.

Fragmentation, topography, and forest age modulate impacts of drought on a tropical forested landscape in eastern Puerto Rico

NASA Astrophysics Data System (ADS)

Uriarte, M.; Schwartz, N.; Budsock, A.

2017-12-01

Naturally regenerating second-growth forests account for ca. 50% of tropical forest cover and provide key ecosystem services. Understanding climate impacts on these ecosystems is critical for developing effective mitigation programs. Differences in environmental conditions and landscape context from old-growth forests may exacerbate climate impacts on second-growth stands. Nearly 70% of forest regeneration is occurring in hilly, upland, or mountain regions; a large proportion of second-growth forests are also fragmented. The effects of drought at the landscape scale, however, and the factors that modulate landscape heterogeneity in drought impacts remain understudied. Heterogeneity in soil moisture, light, and temperature in fragmented, topographically complex landscapes is likely to influence climate impacts on these forests. We examine impacts of a severe drought in 2015 on a forested landscape in Puerto Rico using two anomalies in vegetation indices. The study landscape is fragmented and topographically complex and includes old- and second-growth forests. We consider how topography (slope, aspect), fragmentation (distance to forest edge, patch size), and forest age (old- vs second-growth) modulate landscape heterogeneity of drought impacts and recovery from drought. Drought impacts were more severe in second-growth forests than in old-growth stands. Both topography and forest fragmentation influences the magnitude of drought impacts. Forest growing in steep areas, south facing slopes, small patches, and closer to forest edges exhibited more marked responses to drought. Forest recovery from drought was greater in second-growth forests and south facing slopes but slower in small patches and closer to forest edges. These findings are congruent with studies of drought impacts on tree growth in the study region. Together these results demonstrate the need for a multi-scalar approach to the study of drought impacts on tropical forests.

Effects of nutrient patches and root systems on the clonal plasticity of a rhizomatous grass

USGS Publications Warehouse

Huber-Sannwald, Elisabeth; Pyke, David A.; Caldwell, M.M.; Durham, S.

1998-01-01

Clonal plant foraging has been examined primarily on individual clones exposed to resource-poor and resource-rich environments. We designed an experiment to examine the clonal foraging behavior of the rhizomatous grass Elymus lanceolatus ssp. lanceolatus under the influence of neighboring plant root systems in a heterogeneous nutrient environment. Individual Elymus clones were planted in large bins together with one of three neighboring grass species, Agropyron desertorum, Pseudoroegneria spicata, or Bromus tectorum, which differ in rooting density and growth activity. The position of Elymus clones was manipulated so rhizomes encountered a short-duration nutrient patch and subsequently root systems of the neighboring plants. Unexpectedly, the morphological plasticity of the perennial grass Elymus lanceolatus ssp. lanceolatus was influenced by the presence of the neighboring species much more than by the local nutrient enrichments, although nutrient patches did amplify some of the foraging responses. Elymus rhizomes branched readily and initiated large daughter plants as they encountered the low-density root systems of Pseudoroegneria. When Elymus encountered the fine, dense root systems of the annual Bromus, clonal expansion was initially reduced. Yet, after the short growing season of Bromus, Elymus resumed clonal expansion and produced several daughter plants. Elymus clones were most constrained by the fine, dense root systems of Agropyron desertorum. In this case, a few, long rhizomes avoided the densely rooted soil environment by growing aboveground as stolons crossing over the Agropyron tussocks. Elymus clonal biomass was largest in neighborhoods of Pseudoroegneria, intermediate in neighborhoods with Bromus, and smallest in neighborhoods with Agropyron. The latter were approximately half the size of those in the Pseudoroegneria environments. Elymus growth could not be explained by simple resource competition alone; other mechanisms must have been involved in the apparent differences in interference patterns of neighboring plants with Elymus.

Effects of peatland burning on hydrology, water quality and aquatic ecosystems

NASA Astrophysics Data System (ADS)

Brown, L. E.; Holden, J.; Palmer, S. M.

2009-04-01

Controlled burning is used worldwide for the management of vegetation, yet there is serious concern about the environmental implications of such practices. Across the UK many peatlands are burned to encourage and maintain heather growth. However, detailed evaluations of the costs, benefits and sustainability of burning are hampered by a lack of basic scientific data. This paper will present the outline of a new three year NERC-funded project called EMBER which provides the first co-ordinated evaluation of vegetation burning on peatland hydrological and ecological processes. Case study sites influenced by prescribed burns will be established in internationally important sites in the Peak District and North Pennines, UK. EMBER will increase understanding of the processes linking prescribed peat vegetation fires, hydrology, water quality and stream invertebrate communities in upland peat dominated catchments. Four work packages will aim to: 1) increase understanding of the effects of moorland patch burning on the hydrology and physicochemistry of peat, through examination of changes in soil hydrology and water quality; 2) provide a better understanding of the effects of moorland patch burning on basin runoff quantity and quality, through examination of river flow regimes, suspended sediment concentration and water chemistry; 3) assess the influence of changes in stream hydrology, water quality and sediment fluxes on stream ecosystems through examination of stream invertebrate community biodiversity and fish abundance and 4) gain a more fundamental understanding of some environmental drivers of upland aquatic community response to burning by experimentally manipulating fine sediment flux under controlled conditions using a series of streamside mesocosms. Taken together these packages will provide a holistic patch- to basin-scale evaluation of burning from the perspective of peat hydrology, chemistry, river water quantity and quality, and stream ecosystems, thus providing the balanced knowledge base which is currently lacking for peatlands.

Micro-habitat distribution drives patch quality for sub-tropical rocky plateau amphibians in the northern Western Ghats, India

PubMed Central

Kulkarni, Siddharth; Watve, Aparna; Gaitonde, Nikhil; Pryce, David; Davies, Lewis; Bilton, David T.; Knight, Mairi E.

2018-01-01

The importance of patch quality for amphibians is frequently overlooked in distribution models. Here we demonstrate that it is highly important for the persistence of endemic and endangered amphibians found in the threatened and fragile ecosystems that are the rocky plateaus in Western Maharashtra, India. These plateaus are ferricretes of laterite and characterise the northern section of the Western Ghats/Sri Lanka Biodiversity Hotspot, the eighth most important global hotspot and one of the three most threatened by population growth. We present statistically supported habitat associations for endangered and data-deficient Indian amphibians, demonstrating significant relationships between individual species and their microhabitats. Data were collected during early monsoon across two seasons. Twenty-one amphibian taxa were identified from 14 lateritic plateaus between 67 and 1179m above sea level. Twelve of the study taxa had significant associations with microhabitats using a stepwise analysis of the AICc subroutine (distLM, Primer-e, v7). Generalist taxa were associated with increased numbers of microhabitat types. Non-significant associations are reported for the remaining 9 taxa. Microhabitat distribution was spatially structured and driven by climate and human activity. Woody plants were associated with 44% of high-elevation taxa. Of the 8 low-elevation taxa 63% related to water bodies and 60% of those were associated with pools. Rock size and abundance were important for 33% of high elevation specialists. Three of the 4 caecilians were associated with rocks in addition to soil and stream presence. We conclude the plateaus are individualistic patches whose habitat quality is defined by their microhabitats within climatic zones. PMID:29579111

Metal Patch Antenna

NASA Technical Reports Server (NTRS)

Chamberlain, Neil F. (Inventor); Zawadzki, Mark S. (Inventor); Hodges, Richard E. (Inventor)

2012-01-01

Disclosed herein is a patch antenna comprises a planar conductive patch attached to a ground plane by a support member, and a probe connector in electrical communication with the conductive patch arranged to conduct electromagnetic energy to or from the conductive patch, wherein the conductive patch is disposed essentially parallel to the ground plane and is separated from the ground plane by a spacing distance; wherein the support member comprises a plurality of sides disposed about a central axis oriented perpendicular to the conductive patch and the ground plane; wherein the conductive patch is solely supported above the ground plane by the support member; and wherein the support member provides electrical communication between the planer conductive patch and the ground plane.

Effect of different rates of spent mushroom substrate on the dissipation and bioavailability of cymoxanil and tebuconazole in an agricultural soil.

PubMed

Álvarez-Martín, Alba; Sánchez-Martín, María Jesús; Pose-Juan, Eva; Rodríguez-Cruz, María Sonia

2016-04-15

Physicochemical methods to immobilize pesticides in vulnerable soils are currently being developed to prevent water contamination. Some of these methods include the use of different organic residues to modify soils because they could limit the transport of pesticides and/or facilitate their dissipation. Spent mushroom substrate (SMS) may be used for these purposes. Accordingly a study was conducted under laboratory conditions to know the dissipation and bioavailability of the fungicides cymoxanil and tebuconazole over time in a vineyard soil amended with two rates of spent mushroom substrate (SMS) (5% and 50% (w/w)), selected to prevent the diffuse or point pollution of soil. The dissipation of cymoxanil was more rapid than that of tebuconazole in the different soils studied. The dissipation rate was higher in the amended soil than in the unamended one for both compounds, while no significant differences were observed between the amended soils in either case. An apparent dissipation occurred in the amended soil due to the formation of non-extractable residues. Bound residues increased with incubation time for tebuconazole, although a proportion of this fungicide was bioavailable after 303days. The major proportion of cymoxanil was tightly bound to the amended soil from the start, although an increasing fraction of bound fungicide was bioavailable for mineralization. Soil dehydrogenase activity was significantly affected by SMS application and incubation time; however, it was not significantly modified by fungicide application. The significance of this research suggests that SMS applied at a low or high rate to agricultural soil can be used to prevent both the diffuse or point pollution of soil through the formation of non-extractable residues, although more research is needed to discover the time that fungicides remain adsorbed into the soil decreasing either bioavailability (tebuconazole) or mineralization (cymoxanil) in SMS-amended soils. Copyright © 2016 Elsevier B.V. All rights reserved.

Agricultural use of soil, consequences in soil organic matter and hydraulic conductivity compared with natural vegetation in central Spain

NASA Astrophysics Data System (ADS)

Vega, Verónica; Carral, Pilar; Alvarez, Ana Maria; Marques, Maria Jose

2014-05-01

When ecosystems are under pressure due to high temperatures and water scarcity, the use of land for agriculture can be a handicap for soil and water conservation. The interactions between plants and soils are site-specific. This study provides information about the influence of the preence vs. The absence of vegetation on soil in a semi-arid area of the sout-east of Madrid (Spain, in the Tagus River basin. In this area soil materials are developed over a calcareous-evaporitic lithology. Soils can be classified as Calcisols, having horizons of accumulation with powdered limestone and irregular nodules of calcium carbonate. They can be defined as Haplic Cambisols and Leptic Calcisols (WRB 2006-FAO). The area is mainly used for rainfed agriculture, olive groves, vineyards and cereals. There are some patches of bushes (Quercus sp.) and grasses (Stipa tenacissima L.) although only found on the top of the hills. This study analyses the differences found in soils having three different covers: Quercus coccifera, Stipa tenacissima and lack of vegetation. This last condition was found in the areas between cultivated olive trees. Soil organic matter, porosity and hydraulic conductivity are key properties of soil to understand its ability to adapt to climate or land use changes. In order to measure the influence of different soil covers, four replicates of soil were sampled in each condition at two soil depth, (0-10 cm and 10-20 cm). Hydraulic conductivity was measured in each soil condition and replicate using a Mini-disk® infiltrometer. There were no differences between the two depths sampled. Similarly, there were no changes in electric conductivity (average 0.1±0.03 dS m-1); pH (8.7±0.2) or calcium carbonate content (43±20 %). Nevertheless, significant differences (p>0.001) were found in soil organic matter. The maximum was found in soils under Quercus (4.7±0.5 %), followed by Stipa (2.2±1.1 %). The soil without vegetation in the areas between olive trees had only 0.7±1.1 % soil organic matter; far from the usual limit advisable for cultivated soils. Soil porosity was also affected in cultivated soils, being 39±5% (total porosity), significantly less than those found under Stipa (46%) and Quercus (51%). Hydraulic conductivity presented a similar pattern to porosity, being higher in soils under Quercus, however further research is needed to clarify this result, as it can also be related to changes detected in soil texture. Sand content, which was different between soil conditions, is highly correlated to hydraulic conductivity. Changes in soil texture can be due to erosive processes that have to be studied to establish the causative relationships between these findings. Acknowledgements: Project CGL 2008-04296. Environmental Impact evaluation through the assessment of soil organic matter resilient forms in soils.

Perchlorate Found by Phoenix Could Provide a Mobile Brine Sludge at the Bed of Mars Northern Ice Cap that Would Allow Flow with Very Low Basal Temperatures: Possible Mechanism for Water Table Re-Charge

NASA Astrophysics Data System (ADS)

Fisher, D. A.; Hecht, M.; Kounaves, S.; Catling, D.

2009-03-01

The north cap of Mars has basal temperature that precludes the flow of ice. Phoenix discovered polar soils contain perchlorate salts. These salts depress the melting point so it could form a sludge that provides a mobile bed that moves the ice outwards.

Environmental Assessment for the Tula Peak Road Intersection

DTIC Science & Technology

2009-07-01

essential habitat and as outlined in the Storm Water Pollution Prevention Plan (SWPPP). Long term monitoring will be conducted until the soil is...went beyond the evaluated impact. The actual breach of policy was not discovered until a routine storm water inspection questioned the inadequacy of...project called for disturbing less than one acre, no SWPPP was · originally called for. Upon inspection by the Holloman AFB Storm Water manager, the

Application of Cosmic-ray Soil Moisture Sensing to Understand Land-atmosphere Interactions in Three North American Monsoon Ecosystems

NASA Astrophysics Data System (ADS)

Schreiner-McGraw, A.; Vivoni, E. R.; Franz, T. E.; Anderson, C.

2013-12-01

Human impacts on desert ecosystems have wide ranging effects on the hydrologic cycle which, in turn, influence interactions between the critical zone and the atmosphere. In this contribution, we utilize cosmic-ray soil moisture sensors at three human-modified semiarid ecosystems in the North American monsoon region: a buffelgrass pasture in Sonora, Mexico, a woody-plant encroached savanna ecosystem in Arizona, and a woody-plant encroached shrubland ecosystem in New Mexico. In each case, landscape heterogeneity in the form of bare soil and vegetation patches of different types leads to a complex mosaic of soil moisture and land-atmosphere interactions. Historically, the measurement of spatially-averaged soil moisture at the ecosystem scale (on the order of several hundred square meters) has been problematic. Thus, new advances in measuring cosmogenically-produced neutrons present an opportunity for observational and modeling studies in these ecosystems. We discuss the calibration of the cosmic-ray soil moisture sensors at each site, present comparisons to a distributed network of in-situ measurements, and verify the spatially-aggregated observations using the watershed water balance method at two sites. We focus our efforts on the summer season 2013 and its rainfall period during the North American monsoon. To compare neutron counts to the ground sensors, we utilized an aspect-elevation weighting algorithm to compute an appropriate spatial average for the in-situ measurements. Similarly, the water balance approach utilizes precipitation, runoff, and evapotranspiration measurements in the footprint of the cosmic-ray sensors to estimate a spatially-averaged soil moisture field. Based on these complementary approaches, we empirically determined a relationship between cosmogenically-produced neutrons and the spatially-aggregated soil moisture. This approach may improve upon existing methods used to calculate soil moisture from neutron counts that typically suffer from increasing errors for higher soil moisture content. We also examined the effects of sub-footprint variability in soil moisture on the neutron readings by comparing two of the sites with large variations in topographically-mediated surface flows. Our work also synthesizes seasonal soil moisture dynamics across the desert ecosystems and attempts to tease out differences due to land cover alterations, including the seasonal greening in each study site occurring during the North American monsoon.

Comparing Multiple Scales of CH4 Fluxes in a Boreal Transition Forest - from Soil-Chambers to Eddy Covariance

NASA Astrophysics Data System (ADS)

Savage, K. E.; Shoemaker, J.; Hollinger, D. Y.

2017-12-01

Boreal-transition forests contain a range of soil moisture conditions, from drier "uplands" to embedded wetlands, with transitional soils in between. This creates a complex topography of methane (CH4) producing and consuming patches. Seasonally, CH4 production in wet environments can be orders of magnitude greater than methane uptake rates in drier soils, as well as being much more episodic. The spatial and temporal variability in flux magnitudes from these drainage conditions creates a challenge for constraining the contribution of these forests to the global CH4 cycle. Ground based chambers capture small-scale fluxes, and are often distributed to capture specific soil conditions. Soil chambers have been the primary tool for assessing CH4 fluxes from natural soils, with observations being scaled up to represent broader regions. The study of CH4 biogeochemistry lacked meso-scale measurements to provide checks between the global atmospheric data and the soil chambers. Recent advances in the technology of fast response CH4 analyzers have led to increased use of the eddy-flux covariance (EC) method to capture CH4 fluxes over a larger landscape-scale. The EC method captures net exchange at the top of the vegetation canopy, across a footprint of varying size, dependent on wind-speed, direction, surface roughness, turbulence, sensor height and atmospheric stability. Simultaneous deployment of EC and soil chambers provide a critical means to reconcile bottom up with top down approaches to quantify CH4 fluxes. Two years of CH4 flux data from an EC tower in Howland forest, a boreal-transition forest in north-central Maine, USA, are compared with concurrent automated soil chamber data collected within the tower footprint and distributed among soil drainage classes. An EC footprint model was used to determine a daily and sub-daily tower footprint. Using a published soil analysis of the Howland tower area, and Lidar imagery of tree canopy, we explore various strategies for upscaling chamber fluxes: footprint estimates, aerial weighting by drainage class, and canopy density; and compare to measurements from the EC tower. Analyzing simultaneous flux data from both scales over multiple years, will enable us to evaluate these methodologies and enhance our understanding of CH4 biogeochemistry at all scales.

Linking morphology to ecosystem structure using satellite for monitoring Wetlands

NASA Astrophysics Data System (ADS)

Filipponi, F.; Valentini, E.; Taramelli, A.; Giulio, S.; Persichillo, M.; D'Alpaos, A.

2013-12-01

Modern views on the behavior of complex systems, like the low lying coastal areas, allow the interpretation of phenomenological coastal landscape as a steady state that corresponds to a dynamic equilibrium, and to a self-organized exogenic order of the edge of the chaos. Space-borne data, coupled with field spectral measurements and observations, are quantitative tools for the research on feedbacks between the biological influences and physical forming processes steering landscape changes, allowing the identification of critical thresholds beyond which the ecosystem reach a new steady state. This research deals with a multi-temporal change analysis of halophytic vegetation and morphology of two analogous accumulation sites along the northern Adriatic adjoining coast: the 'Bacan island' (Venice Lagoon) and the Spit of Goro Lagoon (Po Delta). These two sites represent delicate ecosystems and are susceptible to different drivers being located close to the lagoon's inlet. The two tests sites support a great biodiversity and supply important resources, so the conservation of their habitats is necessary to maintain the ecosystem services provision. Evidence from previous studies highlights the role of climate, mostly winds and hydrology acting on sediment transport, but only few accounts for the role of vegetation in landform shaping and sediment stabilizing. In this study spatial trends of both vegetation cover/typology and sediment/soil distribution are implemented to obtain detailed classification from EO. By means of sub-pixel processing techniques (Spectral Mixing Analysis), classifications are analyzed in terms of spatial (Power law) and temporal (Empirical Orthogonal Functions) patterns, in order to find the fingerprint of spatial patterns of vegetation, sediments and very shallow waters and their variation over time. The application of a double step analysis from coarse to finer spatial resolution lead first to a biophysical cover map in term of vegetation typologies and cover percent, sediment typology and length of the different branches highlighting the mosaic of spatial pattern of vegetation, sediments and morphology. Then our results support the fact that the most frequent patch sizes, corresponding to the smallest vegetation patches as consistent with a power law relationship, are associated with the highest length values and specific sediments values; as the patch sizes become larger, and thus less frequent, the length next to patches decreases and reaches much lower values in relations to sediments classes. This indicates that at first, the formation of small vegetation patches increases flow resistance and facilitates the formation of new morphology; at the same time, when a threshold size is reached (due to patch growth or merging between adjacent patches), vegetation controls length of the different branches. In the framework of spatial self-organization, this method gives rise to a new approach to the study of landscape-forming processes, taking into account the prominent role of living organisms in shaping Earth's surface, in order to develop new instruments and tools that allow modular variation of spatial and temporal scales of observation (i.e. from local to regional; from seasonal to inter annual) that is mandatory for a valuable implementation of current management and conservation strategies (Integrated Coastal Zone Management).

Soil greenhouse gas fluxes during wetland forest retreat along the lower Savannah River, Georgia (USA)

USGS Publications Warehouse

Krauss, Ken W.; Whitbeck, Julie L.

2012-01-01

Tidal freshwater forested wetlands (tidal swamps) are periodically affected by salinity intrusion at seaward transitions with marsh, which, along with altered hydrology, may affect the balance of gaseous carbon (C) and nitrogen (N) losses from soils. We measured greenhouse gas emissions (CO2, CH4, N2O) from healthy, moderately degraded, and degraded tidal swamp soils undergoing sea-level-rise-induced retreat along the lower Savannah River, Georgia, USA. Soil CO2 flux ranged from 90.2 to 179.1 mg CO2 m-2 h-1 among study sites, and was the dominant greenhouse gas emitted. CO2 flux differed among sites in some months, while CH4 and N2O fluxes were 0.18 mg CH4 m-2 h-1 and 1.23 μg N2O m-2 h-1, respectively, with no differences among sites. Hydrology, soil temperature, and air temperature, but not salinity, controlled the annual balance of soil CO2 emissions from tidal swamp soils. No clear drivers were found for CH4 or N2O emissions. On occasion, large ebbing or very low tides were even found to draw CO2 fluxes into the soil (dark CO2 uptake), along with CH4 and N2O. Overall, we hypothesized a much greater role for salinity and site condition in controlling the suite of greenhouse gases emitted from tidal swamps than we discovered, and found that CO2 emissions-not CH4 or N2O-contributed most to the global warming potential from these tidal swamp soils.

Soil greenhouse gas fluxes during wetland forest retreat along the Lower Savannah River, Georgia (USA)

USGS Publications Warehouse

Krauss, Ken W.; Whitbeck, Julie L.

2012-01-01

Tidal freshwater forested wetlands (tidal swamps) are periodically affected by salinity intrusion at seaward transitions with marsh, which, along with altered hydrology, may affect the balance of gaseous carbon (C) and nitrogen (N) losses from soils. We measured greenhouse gas emissions (CO2, CH4, N2O) from healthy, moderately degraded, and degraded tidal swamp soils undergoing sea-level-rise-induced retreat along the lower Savannah River, Georgia, USA. Soil CO2 flux ranged from 90.2 to 179.1 mg CO2 m-2 h-1 among study sites, and was the dominant greenhouse gas emitted. CO2 flux differed among sites in some months, while CH4 and N2O fluxes were 0.18 mg CH4 m-2 h-1 and 1.23 μg N2O m-2 h-1, respectively, with no differences among sites. Hydrology, soil temperature, and air temperature, but not salinity, controlled the annual balance of soil CO2 emissions from tidal swamp soils. No clear drivers were found for CH4 or N2O emissions. On occasion, large ebbing or very low tides were even found to draw CO2 fluxes into the soil (dark CO2 uptake), along with CH4 and N2O. Overall, we hypothesized a much greater role for salinity and site condition in controlling the suite of greenhouse gases emitted from tidal swamps than we discovered, and found that CO2 emissions–not CH4 or N2O–contributed most to the global warming potential from these tidal swamp soils.

Pathogen Decontamination of Food Crop Soil: A Review.

PubMed

Gurtler, Joshua B

2017-09-01

The purpose of this review is to delineate means of decontaminating soil. This information might be used to mitigate soil-associated risks of foodborne pathogens. The majority of the research in the published literature involves inactivation of plant pathogens in soil, i.e., those pathogens harmful to fruit and vegetable production and ornamental plants. Very little has been published regarding the inactivation of foodborne human pathogens in crop soil. Nevertheless, because decontamination techniques for plant pathogens might also be useful methods for eliminating foodborne pathogens, this review also includes inactivation of plant pathogens, with appropriate discussion and comparisons, in the hopes that these methods may one day be validated against foodborne pathogens. Some of the major soil decontamination methods that have been investigated and are covered include chemical decontamination (chemigation), solarization, steaming, biofumigation, bacterial competitive exclusion, torch flaming, microwave treatment, and amendment with biochar. Other innovative means of inactivating foodborne pathogens in soils may be discovered and explored in the future, provided that these techniques are economically feasible in terms of chemicals, equipment, and labor. Food microbiology and food safety researchers should reach out to soil scientists and plant pathologists to create links where they do not currently exist and strengthen relationships where they do exist to take advantage of multidisciplinary skills. In time, agricultural output and the demand for fresh produce will increase. With advances in the sensitivity of pathogen testing and epidemiological tracebacks, the need to mitigate preharvest bacterial contamination of fresh produce will become paramount. Hence, soil decontamination technologies may become more economically feasible and practical in light of increasing the microbial safety of fresh produce.

Light transmission and preference of eye patches for occlusion treatment.

PubMed

Heo, Hwan; Park, Jung Won; Park, Sang Woo

2013-01-01

To investigate light transmission and preference for six eye patches for occlusion therapy. Six patches were examined, including; Ortopad Fun Pack, Ortopad Flesh, Kawamoto A-1, Kawamoto A-2, 3M Opticlude, and Everade Eye Guard. The size and the presence of a light blocking pad of patches were investigated. The amount of light transmitted through the patches was evaluated, using a digital light meter and a model eye, in three different environments; indoors with fluorescent light, outdoors on a sunny day, and strong light from illuminator. After patching the normal eye, the flash visual evoked potential (VEP) was measured. Thirty patients with amblyopia or horizontal strabismus, who received occlusion therapy as initial treatment, were included. After using all six patches, patients completed a 7-item questionnaire regarding the patch preference for size, color and shape, adhesive power, pain with removal, skin irritation after removing patch, parent's preference and overall opinion. All patches had a light-blocking pad, except the 3M Nexcare. Ortopad had the strongest light blocking power in the three environments, and the 3M Nexcare had the weakest power. In flash VEP, Ortopad and Kawamoto patches showed flat, but 3M Nexcare and Everade Eye Guard showed normal response. There were significant preferential differences among the patches in all the items of the questionnaire (P<0.05). In comparison between the patches respectively, 3M Nexcare received the lowest satisfaction in pain when removing a patch and skin irritation after removing a patch. Kawamoto A-2 received the lowest score in the overall satisfaction. We found differences in the light-blocking power and in the preference of the various patches for the occlusion treatment. This is a pilot study regarding only characteristics and preferences of patches. Further clinical studies regarding the relationship between characteristics or preferences of patches and outcomes of occlusion treatment are needed.

Tolerability, usability and acceptability of dissolving microneedle patch administration in human subjects

PubMed Central

Arya, Jaya; Henry, Sebastien; Kalluri, Haripriya; McAllister, Devin V.; Pewin, Winston P.; Prausnitz, Mark R.

2017-01-01

To support translation of microneedle patches from pre-clinical development into clinical trials, this study examined the effect of microneedle patch application on local skin reactions, reliability of use and acceptability to patients. Placebo patches containing dissolving microneedles were administered to fifteen human participants. Microneedle patches were well tolerated in the skin with no pain or swelling and only mild erythema localized to the site of patch administration that resolved fully within seven days. Microneedle patches could be administered by hand without the need of an applicator and delivery efficiencies were similar for investigator-administration and self-administration. Microneedle patch administration was not considered painful and the large majority of subjects were somewhat or fully confident that they self-administered patches correctly. Microneedle patches were overwhelmingly preferred over conventional needle and syringe injection. Altogether, these results demonstrate that dissolving microneedle patches were well tolerated, easily usable and strongly accepted by human subjects, which will facilitate further clinical translation of this technology. PMID:28285193

Mars Environmental Compatibility Assessment (MECA): Identifying the Hazards of the Martian Soil

NASA Technical Reports Server (NTRS)

Meloy, T. P.; Hecht, M. H.; Anderson, M. S.; Frant, M. A.; Fuerstenau, S. D.; Keller, H. U.; Markiewicz, W. J.; Marshall, J.; Pike, W. T.; Quate, C. F.

1999-01-01

Sometime in the next decade NASA will decide whether to send a human expedition to explore the planet Mars. The Mars Environmental Compatibility Assessment (MECA) has been selected by NASA to evaluate the Martian environment for soil and dust hazards to human exploration. The integrated MECA payload contains three elements: a wet-chemistry laboratory, a microscopy station, and enhancements to a lander robot-arm system incorporating arrays of material patches and an electrometer to identify triboelectric charging during soil excavation. The wet-chemistry laboratory will evaluate samples of Martian soil in water to determine the total dissolved solids, redox potential, pH, and quantify the concentration of many soluble ions using ion-selective electrodes. These electrodes can detect potentially dangerous heavy-metal ions, emitted pathogenic gases, and the soil's corrosive potential. MECA's microscopy station combines optical and atomic-force microscopy with a robot-arm camera to provide imaging over nine orders of magnitude, from meters to nanometers. Soil particle properties including size, shape, color, hardness, adhesive potential (electrostatic and magnetic), will be determined on the microscope stage using an ar-ray of sample receptacles and collection substrates, and an abrasion tool,. The simple, rugged atomic-force microscope will image in the submicron size range and has the capability of performing a particle-by-particle analysis of the dust and soil. Although selected by NASA's Human Exploration and Development of Space Enterprise, the MECA instrument suite also has the capability to address basic geology, paleoclimate, and exobiology issues. To understand both contemporaneous and ancient processes on Mars, the mineralogical, petrological, and reactivity of Martian surface materials should be constrained: the NMCA experiment will shed light on these quantities through its combination of chemistry and microscopy. On Earth, the earliest forms of life are preserved as microfossils. The atomic-force microscope will have the required resolution to image down to the scale of terrestrial microfossils and beyond.

Findings of the wetland survey of the David Witherspoon, Inc., 1630 Site, South Knoxville, Knox County, Tennessee

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rosensteel, B.A.

1997-03-01

In accordance with Department of Energy (DOE) Regulations surveys for wetland presence or absence were conducted in September 1996 on the DWI-1630 site (Witherspoon Landfill) located in South Knoxville, Knox County, Tennessee. The DWI-1630 site includes a closed, capped landfill area, areas of past disturbance adjacent to the capped area, and patches of hardwood forest. Wetlands were identified on the landfill cap and in a small bottomland that was formerly used for a retention pond in the southwest corner of the DWI-1630 site. The wetlands identified on the cap are man-induced, atypical situation wetlands. These areas have hydrophytic vegetation andmore » wetland hydrology, but the soils do not have hydric characteristics. Wetland development appears to be due to a combination of the grading or subsidence of the clay landfill cap, the low permeability of the clay fill soil, and the absence of surface drainage outlets from the depressions. These atypical situation wetland areas may not be considered by the US Army Corps of Engineers or the State of Tennessee to be jurisdictional wetlands. The wetland in the former retention pond area has hydrophytic vegetation, wetland hydrology, and hydric soils and is a jurisdictional wetland.« less